Query 044085
Match_columns 1151
No_of_seqs 636 out of 5378
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044085.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044085hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.4E-85 5.3E-90 787.0 45.1 613 26-660 18-675 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.9E-64 1.5E-68 640.6 52.9 703 140-1120 182-946 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.3E-43 1.8E-47 383.7 18.0 278 147-432 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 7E-36 1.5E-40 385.6 26.2 521 501-1116 70-606 (968)
5 PLN00113 leucine-rich repeat r 100.0 5.3E-35 1.2E-39 377.4 26.3 497 526-1117 70-584 (968)
6 KOG4194 Membrane glycoprotein 100.0 3.6E-29 7.9E-34 267.5 6.6 222 559-866 55-282 (873)
7 KOG4194 Membrane glycoprotein 99.9 8.3E-28 1.8E-32 257.2 2.4 223 741-1046 198-426 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 1.3E-29 2.8E-34 259.3 -11.3 338 739-1117 182-541 (565)
9 KOG0444 Cytoskeletal regulator 99.9 3.9E-27 8.5E-32 253.1 -6.3 370 554-1099 5-380 (1255)
10 KOG0618 Serine/threonine phosp 99.9 2.1E-26 4.6E-31 260.5 -5.5 108 551-660 40-147 (1081)
11 KOG0472 Leucine-rich repeat pr 99.9 2.4E-27 5.2E-32 242.8 -13.2 427 548-1092 106-539 (565)
12 PLN03210 Resistant to P. syrin 99.9 3.9E-22 8.3E-27 256.6 29.2 218 419-658 471-689 (1153)
13 KOG0444 Cytoskeletal regulator 99.9 8.8E-26 1.9E-30 242.8 -6.3 365 576-1118 4-376 (1255)
14 KOG0618 Serine/threonine phosp 99.9 8.1E-26 1.8E-30 255.8 -7.0 105 524-637 44-148 (1081)
15 KOG4237 Extracellular matrix p 99.7 5.1E-19 1.1E-23 182.2 -3.2 116 545-661 80-199 (498)
16 PRK15387 E3 ubiquitin-protein 99.7 3.4E-16 7.5E-21 185.6 14.6 73 556-637 201-273 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 3.9E-15 8.4E-20 176.7 16.4 254 742-1093 203-457 (788)
18 KOG4237 Extracellular matrix p 99.6 2E-17 4.2E-22 170.6 -6.2 415 558-1021 69-498 (498)
19 PRK15370 E3 ubiquitin-protein 99.6 1.1E-14 2.3E-19 174.5 12.5 81 556-644 178-258 (754)
20 PRK15370 E3 ubiquitin-protein 99.4 7.8E-13 1.7E-17 158.7 12.7 52 741-799 179-231 (754)
21 PRK04841 transcriptional regul 99.3 1.1E-10 2.4E-15 150.8 26.0 292 142-479 14-332 (903)
22 KOG0617 Ras suppressor protein 99.3 4.9E-14 1.1E-18 128.5 -5.0 106 554-660 31-137 (264)
23 PRK00411 cdc6 cell division co 99.2 1.6E-09 3.4E-14 125.0 26.8 301 140-458 28-358 (394)
24 KOG0617 Ras suppressor protein 99.2 4.2E-13 9.1E-18 122.4 -2.9 85 575-661 29-113 (264)
25 TIGR03015 pepcterm_ATPase puta 99.2 1.8E-09 3.9E-14 117.5 22.4 182 170-356 44-242 (269)
26 KOG4658 Apoptotic ATPase [Sign 99.2 1.2E-11 2.7E-16 150.8 5.1 124 554-678 543-671 (889)
27 TIGR02928 orc1/cdc6 family rep 99.2 9E-09 1.9E-13 117.4 27.8 302 141-458 14-350 (365)
28 cd00116 LRR_RI Leucine-rich re 99.1 4.3E-12 9.2E-17 142.6 -6.0 64 575-638 19-93 (319)
29 TIGR00635 ruvB Holliday juncti 99.0 2.3E-08 4.9E-13 110.8 20.8 277 142-459 4-290 (305)
30 PRK00080 ruvB Holliday junctio 99.0 2E-08 4.3E-13 111.7 19.3 277 142-459 25-311 (328)
31 PF01637 Arch_ATPase: Archaeal 99.0 2E-09 4.3E-14 114.8 10.5 193 144-351 1-233 (234)
32 COG2909 MalT ATP-dependent tra 98.9 1.4E-07 3.1E-12 109.2 23.0 291 150-480 23-339 (894)
33 PF05729 NACHT: NACHT domain 98.9 1E-08 2.2E-13 102.5 11.0 144 170-319 1-163 (166)
34 cd00116 LRR_RI Leucine-rich re 98.9 3.1E-10 6.8E-15 127.4 -0.2 89 550-638 17-120 (319)
35 PRK15386 type III secretion pr 98.9 1.8E-08 3.8E-13 109.9 12.4 185 937-1140 48-237 (426)
36 PTZ00112 origin recognition co 98.8 5.4E-07 1.2E-11 105.1 23.2 213 141-356 754-986 (1164)
37 COG2256 MGS1 ATPase related to 98.8 9.6E-08 2.1E-12 101.2 14.2 203 168-396 47-265 (436)
38 KOG1259 Nischarin, modulator o 98.8 1.5E-09 3.2E-14 108.7 0.5 125 940-1093 283-411 (490)
39 KOG3207 Beta-tubulin folding c 98.8 9.5E-10 2.1E-14 116.4 -1.3 154 937-1091 168-336 (505)
40 PRK13342 recombination factor 98.7 3.4E-07 7.4E-12 105.0 18.9 182 142-356 12-200 (413)
41 PF14580 LRR_9: Leucine-rich r 98.7 2.6E-09 5.6E-14 104.1 0.5 108 937-1047 15-124 (175)
42 KOG0532 Leucine-rich repeat (L 98.7 5.3E-10 1.2E-14 121.9 -5.5 176 550-798 92-270 (722)
43 PRK06893 DNA replication initi 98.7 2.2E-07 4.7E-12 97.2 13.8 155 170-356 40-207 (229)
44 PF14580 LRR_9: Leucine-rich r 98.7 2.4E-08 5.2E-13 97.3 5.5 105 554-661 40-151 (175)
45 KOG3207 Beta-tubulin folding c 98.6 3.5E-09 7.5E-14 112.2 -1.1 82 964-1045 247-335 (505)
46 KOG4341 F-box protein containi 98.6 3.9E-10 8.5E-15 118.6 -8.1 110 766-887 139-255 (483)
47 PRK04195 replication factor C 98.6 4.3E-06 9.3E-11 98.0 23.6 248 142-431 14-271 (482)
48 COG3899 Predicted ATPase [Gene 98.6 2.5E-06 5.3E-11 105.6 21.6 309 143-477 1-384 (849)
49 COG4886 Leucine-rich repeat (L 98.6 4.1E-08 8.9E-13 113.4 5.1 107 552-660 112-219 (394)
50 PRK07003 DNA polymerase III su 98.5 7.3E-06 1.6E-10 95.7 22.2 183 142-354 16-223 (830)
51 PF05496 RuvB_N: Holliday junc 98.5 3E-06 6.5E-11 84.2 15.2 183 142-357 24-226 (233)
52 PRK14949 DNA polymerase III su 98.5 3.4E-06 7.3E-11 100.6 17.2 184 142-352 16-220 (944)
53 PRK05564 DNA polymerase III su 98.5 4E-06 8.7E-11 92.6 16.8 182 142-352 4-190 (313)
54 PRK06645 DNA polymerase III su 98.5 2.4E-06 5.3E-11 98.3 15.2 198 142-352 21-229 (507)
55 PRK14961 DNA polymerase III su 98.4 5E-06 1.1E-10 93.6 17.3 194 142-353 16-221 (363)
56 PRK14963 DNA polymerase III su 98.4 8.7E-07 1.9E-11 102.6 11.1 196 142-350 14-215 (504)
57 PF13855 LRR_8: Leucine rich r 98.4 2.4E-07 5.1E-12 73.9 4.4 57 556-612 1-59 (61)
58 PRK12402 replication factor C 98.4 6.2E-06 1.3E-10 93.1 17.4 202 142-354 15-228 (337)
59 PF13401 AAA_22: AAA domain; P 98.4 8.1E-07 1.8E-11 84.5 8.6 117 169-287 4-125 (131)
60 PF13173 AAA_14: AAA domain 98.4 8.8E-07 1.9E-11 83.3 8.4 120 170-311 3-127 (128)
61 TIGR03420 DnaA_homol_Hda DnaA 98.4 4E-06 8.6E-11 88.5 14.3 172 147-356 22-205 (226)
62 PTZ00202 tuzin; Provisional 98.4 5.8E-05 1.3E-09 82.1 22.7 169 137-318 257-433 (550)
63 PRK14960 DNA polymerase III su 98.4 6.8E-06 1.5E-10 95.0 16.6 194 142-352 15-219 (702)
64 KOG1259 Nischarin, modulator o 98.4 5E-08 1.1E-12 98.0 -0.7 109 551-663 279-387 (490)
65 PRK14956 DNA polymerase III su 98.4 4.4E-06 9.6E-11 93.9 14.5 198 142-352 18-222 (484)
66 PRK12323 DNA polymerase III su 98.4 5.7E-06 1.2E-10 95.3 15.6 199 142-352 16-225 (700)
67 PF13855 LRR_8: Leucine rich r 98.4 5E-07 1.1E-11 72.0 5.1 60 964-1023 2-61 (61)
68 PLN03025 replication factor C 98.4 8.7E-06 1.9E-10 90.2 16.5 186 142-351 13-199 (319)
69 PRK15386 type III secretion pr 98.4 1.8E-06 3.9E-11 94.5 10.6 135 963-1115 52-188 (426)
70 PRK14957 DNA polymerase III su 98.4 1.3E-05 2.8E-10 92.9 18.2 186 142-354 16-223 (546)
71 TIGR02903 spore_lon_C ATP-depe 98.4 4E-06 8.8E-11 100.2 14.4 173 142-320 154-367 (615)
72 cd00009 AAA The AAA+ (ATPases 98.3 5.3E-06 1.2E-10 81.0 12.2 125 145-289 1-131 (151)
73 PRK07994 DNA polymerase III su 98.3 1.7E-05 3.6E-10 93.5 17.0 195 142-353 16-221 (647)
74 PLN03150 hypothetical protein; 98.3 7.5E-07 1.6E-11 107.5 6.0 100 557-656 419-521 (623)
75 KOG4341 F-box protein containi 98.3 1.3E-08 2.9E-13 107.3 -7.9 293 788-1139 138-456 (483)
76 PRK07471 DNA polymerase III su 98.3 4.5E-06 9.6E-11 92.8 11.2 197 142-353 19-239 (365)
77 PRK09112 DNA polymerase III su 98.3 3.1E-05 6.8E-10 85.6 17.4 197 141-353 22-241 (351)
78 PRK13341 recombination factor 98.2 2.2E-05 4.7E-10 94.7 17.4 173 142-350 28-215 (725)
79 COG1474 CDC6 Cdc6-related prot 98.2 4.4E-05 9.6E-10 84.7 18.3 207 142-352 17-238 (366)
80 PRK00440 rfc replication facto 98.2 3.6E-05 7.9E-10 86.1 18.0 184 142-352 17-203 (319)
81 COG3903 Predicted ATPase [Gene 98.2 6E-06 1.3E-10 88.7 10.6 289 168-476 13-311 (414)
82 COG4886 Leucine-rich repeat (L 98.2 6.8E-07 1.5E-11 103.3 3.9 124 523-656 114-238 (394)
83 PRK05896 DNA polymerase III su 98.2 1.8E-05 3.9E-10 91.7 15.0 195 142-353 16-222 (605)
84 PF13191 AAA_16: AAA ATPase do 98.2 3.2E-06 6.8E-11 86.2 8.1 50 143-195 1-50 (185)
85 PRK09376 rho transcription ter 98.2 2.9E-06 6.2E-11 91.8 7.9 86 170-257 170-265 (416)
86 PRK14964 DNA polymerase III su 98.2 3E-05 6.5E-10 88.6 16.5 184 142-351 13-216 (491)
87 KOG0989 Replication factor C, 98.2 1.1E-05 2.4E-10 82.6 11.4 187 141-347 35-225 (346)
88 PRK08691 DNA polymerase III su 98.2 3.2E-05 7E-10 90.6 16.8 182 142-353 16-221 (709)
89 cd01128 rho_factor Transcripti 98.2 4.3E-06 9.3E-11 87.3 8.8 87 170-258 17-113 (249)
90 PRK08727 hypothetical protein; 98.2 2.8E-05 6.1E-10 81.5 14.8 151 170-352 42-204 (233)
91 KOG2227 Pre-initiation complex 98.2 3.5E-05 7.6E-10 83.6 15.5 215 139-356 147-376 (529)
92 PRK14962 DNA polymerase III su 98.2 3.7E-05 7.9E-10 88.5 16.9 203 142-370 14-240 (472)
93 PRK08084 DNA replication initi 98.2 3.3E-05 7.1E-10 81.1 14.9 155 170-356 46-213 (235)
94 PRK14951 DNA polymerase III su 98.2 3.5E-05 7.6E-10 90.7 16.4 198 142-352 16-225 (618)
95 PRK14955 DNA polymerase III su 98.2 2.6E-05 5.7E-10 88.8 15.1 199 142-351 16-227 (397)
96 PRK07940 DNA polymerase III su 98.2 4.4E-05 9.5E-10 85.7 16.3 185 142-353 5-214 (394)
97 TIGR00678 holB DNA polymerase 98.2 3.9E-05 8.5E-10 77.9 14.5 92 247-348 95-187 (188)
98 PRK14958 DNA polymerase III su 98.1 3.3E-05 7.2E-10 89.9 15.5 186 142-353 16-221 (509)
99 PRK09087 hypothetical protein; 98.1 2.8E-05 6.1E-10 80.6 13.3 144 170-356 45-199 (226)
100 KOG0532 Leucine-rich repeat (L 98.1 4.2E-07 9.2E-12 99.8 -0.3 112 549-664 137-248 (722)
101 KOG1909 Ran GTPase-activating 98.1 4.9E-07 1.1E-11 93.8 0.1 90 549-638 23-132 (382)
102 PRK14959 DNA polymerase III su 98.1 0.00025 5.5E-09 82.9 21.1 197 142-356 16-225 (624)
103 PRK09111 DNA polymerase III su 98.1 8.6E-05 1.9E-09 87.8 17.0 199 142-353 24-234 (598)
104 PRK14952 DNA polymerase III su 98.1 0.00014 3E-09 85.5 18.1 198 142-356 13-224 (584)
105 COG2255 RuvB Holliday junction 98.1 0.00016 3.4E-09 73.5 15.8 182 142-356 26-227 (332)
106 PRK05642 DNA replication initi 98.0 7.5E-05 1.6E-09 78.3 14.4 155 170-356 46-212 (234)
107 KOG2120 SCF ubiquitin ligase, 98.0 7.6E-08 1.6E-12 96.8 -7.6 172 941-1114 185-373 (419)
108 TIGR02397 dnaX_nterm DNA polym 98.0 0.00016 3.4E-09 82.3 18.3 186 142-354 14-220 (355)
109 PRK14969 DNA polymerase III su 98.0 7.2E-05 1.6E-09 87.8 15.6 185 142-352 16-220 (527)
110 PRK14954 DNA polymerase III su 98.0 0.00014 3.1E-09 86.0 17.7 198 142-349 16-225 (620)
111 PRK08903 DnaA regulatory inact 98.0 9.2E-05 2E-09 77.9 14.7 152 169-356 42-203 (227)
112 TIGR01242 26Sp45 26S proteasom 98.0 2.9E-05 6.3E-10 87.8 11.4 181 141-346 121-328 (364)
113 PRK14970 DNA polymerase III su 98.0 0.0002 4.4E-09 81.4 18.3 185 142-351 17-208 (367)
114 KOG2028 ATPase related to the 98.0 8.1E-05 1.8E-09 77.6 13.2 158 168-347 161-331 (554)
115 PRK07764 DNA polymerase III su 98.0 0.00012 2.6E-09 89.6 17.1 194 142-352 15-221 (824)
116 PRK07133 DNA polymerase III su 98.0 0.00018 3.9E-09 85.5 17.9 196 142-353 18-220 (725)
117 PLN03150 hypothetical protein; 98.0 1E-05 2.2E-10 97.9 7.7 80 965-1045 420-499 (623)
118 PF12799 LRR_4: Leucine Rich r 98.0 5.8E-06 1.3E-10 59.9 3.4 38 557-594 2-39 (44)
119 PHA02544 44 clamp loader, smal 98.0 0.00023 4.9E-09 79.3 17.8 148 142-316 21-170 (316)
120 KOG1909 Ran GTPase-activating 98.0 1.1E-06 2.3E-11 91.3 -1.2 95 697-799 23-131 (382)
121 PF14516 AAA_35: AAA-like doma 98.0 0.0026 5.6E-08 70.6 25.1 201 141-359 10-246 (331)
122 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.5E-11 101.3 -1.7 106 552-661 91-197 (414)
123 PRK06305 DNA polymerase III su 97.9 0.00029 6.2E-09 81.2 17.3 187 142-352 17-223 (451)
124 TIGR00767 rho transcription te 97.9 4E-05 8.7E-10 83.7 9.7 87 170-258 169-265 (415)
125 PRK14950 DNA polymerase III su 97.9 0.00019 4.1E-09 86.0 16.0 197 142-355 16-224 (585)
126 PRK14971 DNA polymerase III su 97.9 0.00036 7.8E-09 83.3 18.2 183 142-352 17-222 (614)
127 PRK08451 DNA polymerase III su 97.9 0.0004 8.6E-09 80.4 17.8 182 142-353 14-219 (535)
128 CHL00181 cbbX CbbX; Provisiona 97.9 0.0004 8.8E-09 74.9 16.8 164 142-321 23-211 (287)
129 PRK14087 dnaA chromosomal repl 97.9 0.00033 7.2E-09 80.7 17.1 170 169-356 141-323 (450)
130 KOG0531 Protein phosphatase 1, 97.9 3E-06 6.5E-11 97.9 0.4 107 554-664 70-176 (414)
131 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 57.9 3.6 40 579-619 1-40 (44)
132 PRK11331 5-methylcytosine-spec 97.8 0.00021 4.6E-09 79.6 14.0 120 142-273 175-298 (459)
133 PRK14953 DNA polymerase III su 97.8 0.0005 1.1E-08 79.7 17.6 185 142-353 16-221 (486)
134 PF00308 Bac_DnaA: Bacterial d 97.8 0.00032 7E-09 72.5 14.0 165 168-354 33-210 (219)
135 PRK14948 DNA polymerase III su 97.8 0.0005 1.1E-08 82.0 17.4 198 142-354 16-224 (620)
136 PRK03992 proteasome-activating 97.8 0.00021 4.5E-09 81.1 13.0 179 141-345 130-336 (389)
137 PRK14965 DNA polymerase III su 97.8 0.0018 3.8E-08 77.3 21.2 211 142-369 16-241 (576)
138 PRK07399 DNA polymerase III su 97.8 0.0016 3.6E-08 71.0 19.1 199 142-354 4-223 (314)
139 PF05673 DUF815: Protein of un 97.8 0.0011 2.3E-08 67.4 16.1 125 139-290 24-153 (249)
140 TIGR02881 spore_V_K stage V sp 97.7 0.00049 1.1E-08 73.9 14.6 162 143-320 7-192 (261)
141 TIGR02880 cbbX_cfxQ probable R 97.7 0.0004 8.7E-09 75.0 13.8 162 143-320 23-209 (284)
142 PRK06647 DNA polymerase III su 97.7 0.0013 2.8E-08 77.6 18.1 195 142-353 16-221 (563)
143 KOG2543 Origin recognition com 97.7 0.0002 4.2E-09 75.9 9.8 166 141-317 5-191 (438)
144 TIGR00362 DnaA chromosomal rep 97.7 0.0011 2.5E-08 76.3 16.9 161 169-351 136-309 (405)
145 PRK06620 hypothetical protein; 97.6 0.00047 1E-08 70.9 12.1 166 141-354 16-191 (214)
146 PRK05563 DNA polymerase III su 97.6 0.0017 3.7E-08 77.0 18.3 193 142-352 16-220 (559)
147 KOG2120 SCF ubiquitin ligase, 97.6 5.4E-07 1.2E-11 90.9 -9.5 155 963-1117 185-351 (419)
148 PRK05707 DNA polymerase III su 97.6 0.0012 2.6E-08 72.4 15.5 98 247-352 105-203 (328)
149 TIGR02639 ClpA ATP-dependent C 97.6 0.00055 1.2E-08 84.6 14.2 159 142-319 182-358 (731)
150 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00018 4E-09 89.3 9.8 184 142-345 187-389 (852)
151 PRK14088 dnaA chromosomal repl 97.6 0.0011 2.4E-08 76.4 15.1 181 170-371 131-331 (440)
152 CHL00095 clpC Clp protease ATP 97.5 0.0004 8.6E-09 87.0 11.8 157 142-317 179-352 (821)
153 PRK12422 chromosomal replicati 97.5 0.0025 5.4E-08 73.2 17.2 182 142-346 112-307 (445)
154 KOG1644 U2-associated snRNP A' 97.5 0.00011 2.5E-09 70.6 4.8 79 964-1044 43-121 (233)
155 PF05621 TniB: Bacterial TniB 97.5 0.0045 9.8E-08 65.2 17.0 207 141-351 33-260 (302)
156 KOG4579 Leucine-rich repeat (L 97.5 1E-05 2.2E-10 72.2 -2.1 83 554-637 51-134 (177)
157 KOG0991 Replication factor C, 97.5 0.0022 4.8E-08 63.0 13.1 108 142-270 27-135 (333)
158 KOG2982 Uncharacterized conser 97.5 5.3E-05 1.1E-09 76.9 2.1 84 554-637 69-157 (418)
159 PRK00149 dnaA chromosomal repl 97.5 0.0029 6.3E-08 73.8 16.8 181 169-371 148-348 (450)
160 PF00004 AAA: ATPase family as 97.4 0.00067 1.4E-08 64.4 9.2 22 172-193 1-22 (132)
161 KOG1859 Leucine-rich repeat pr 97.4 6.4E-06 1.4E-10 93.2 -5.4 109 548-660 179-289 (1096)
162 KOG4579 Leucine-rich repeat (L 97.4 2.5E-05 5.4E-10 69.8 -0.9 102 556-659 27-132 (177)
163 KOG2982 Uncharacterized conser 97.4 9.9E-05 2.2E-09 75.0 2.8 81 1059-1142 200-286 (418)
164 TIGR00602 rad24 checkpoint pro 97.4 0.0013 2.9E-08 77.8 12.2 52 141-193 83-134 (637)
165 PRK11034 clpA ATP-dependent Cl 97.3 0.0015 3.3E-08 79.5 13.0 159 142-319 186-362 (758)
166 PRK14086 dnaA chromosomal repl 97.3 0.003 6.5E-08 73.8 14.4 161 170-352 315-488 (617)
167 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0047 1E-07 66.1 15.0 124 150-288 10-161 (262)
168 PRK08116 hypothetical protein; 97.3 0.00069 1.5E-08 72.3 8.5 102 171-287 116-220 (268)
169 PRK08058 DNA polymerase III su 97.3 0.0047 1E-07 68.5 15.3 150 143-317 6-180 (329)
170 PRK08769 DNA polymerase III su 97.3 0.0091 2E-07 65.0 16.9 97 247-353 112-209 (319)
171 PTZ00454 26S protease regulato 97.3 0.0028 6.1E-08 71.5 13.4 180 142-346 145-351 (398)
172 smart00382 AAA ATPases associa 97.2 0.0019 4.1E-08 62.3 10.3 87 170-260 3-90 (148)
173 PTZ00361 26 proteosome regulat 97.2 0.0019 4.2E-08 73.3 11.5 159 142-320 183-368 (438)
174 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0041 8.9E-08 78.3 15.2 159 142-319 173-349 (852)
175 COG0593 DnaA ATPase involved i 97.2 0.003 6.6E-08 69.9 12.0 155 168-344 112-278 (408)
176 TIGR03689 pup_AAA proteasome A 97.2 0.0043 9.3E-08 71.6 13.5 167 142-319 182-378 (512)
177 PRK06871 DNA polymerase III su 97.2 0.014 3.1E-07 63.6 16.7 94 247-349 106-200 (325)
178 CHL00176 ftsH cell division pr 97.1 0.0059 1.3E-07 73.1 14.8 179 142-345 183-387 (638)
179 PF13177 DNA_pol3_delta2: DNA 97.1 0.0055 1.2E-07 60.0 12.2 138 146-307 1-162 (162)
180 COG1373 Predicted ATPase (AAA+ 97.1 0.0055 1.2E-07 69.6 13.9 149 171-352 39-192 (398)
181 PRK06090 DNA polymerase III su 97.1 0.013 2.8E-07 63.8 15.9 167 150-352 11-201 (319)
182 KOG1644 U2-associated snRNP A' 97.1 0.0005 1.1E-08 66.3 4.4 102 556-660 42-150 (233)
183 COG5238 RNA1 Ran GTPase-activa 97.1 9.6E-05 2.1E-09 74.0 -0.4 85 553-637 27-131 (388)
184 PRK10536 hypothetical protein; 97.1 0.0051 1.1E-07 63.5 12.0 134 143-289 56-214 (262)
185 KOG3665 ZYG-1-like serine/thre 97.1 0.00038 8.2E-09 83.9 4.4 112 522-641 145-265 (699)
186 PRK08181 transposase; Validate 97.1 0.0017 3.6E-08 68.9 8.7 100 171-288 108-209 (269)
187 KOG1859 Leucine-rich repeat pr 97.1 2.6E-05 5.7E-10 88.4 -5.1 111 556-671 164-275 (1096)
188 PRK08118 topology modulation p 97.1 0.00029 6.2E-09 69.4 2.3 34 171-205 3-37 (167)
189 PRK10865 protein disaggregatio 97.1 0.0052 1.1E-07 76.9 13.9 45 142-192 178-222 (857)
190 COG3267 ExeA Type II secretory 97.0 0.037 8E-07 56.2 16.5 179 169-354 51-247 (269)
191 PF01695 IstB_IS21: IstB-like 97.0 0.0013 2.9E-08 65.4 6.5 100 170-287 48-149 (178)
192 PRK10787 DNA-binding ATP-depen 97.0 0.0037 7.9E-08 77.0 11.6 167 141-319 321-506 (784)
193 TIGR01241 FtsH_fam ATP-depende 97.0 0.011 2.3E-07 70.0 14.8 187 141-352 54-267 (495)
194 TIGR02639 ClpA ATP-dependent C 97.0 0.0077 1.7E-07 74.7 13.9 123 142-275 454-580 (731)
195 COG0466 Lon ATP-dependent Lon 96.9 0.0061 1.3E-07 70.5 11.5 166 141-319 322-508 (782)
196 PRK07993 DNA polymerase III su 96.9 0.024 5.3E-07 62.5 15.9 180 150-352 10-204 (334)
197 PRK08939 primosomal protein Dn 96.9 0.0033 7.1E-08 68.4 8.7 122 146-287 135-260 (306)
198 PRK07952 DNA replication prote 96.9 0.0057 1.2E-07 63.9 10.0 102 170-287 100-204 (244)
199 COG2812 DnaX DNA polymerase II 96.9 0.009 2E-07 68.4 12.4 195 142-353 16-221 (515)
200 PRK12608 transcription termina 96.9 0.0055 1.2E-07 67.0 10.2 99 152-257 121-229 (380)
201 KOG3665 ZYG-1-like serine/thre 96.9 0.00035 7.6E-09 84.1 1.2 113 546-660 138-260 (699)
202 COG1222 RPT1 ATP-dependent 26S 96.9 0.04 8.7E-07 58.6 15.9 190 142-357 151-372 (406)
203 PRK06526 transposase; Provisio 96.9 0.0012 2.6E-08 69.7 5.0 100 170-288 99-201 (254)
204 PRK12377 putative replication 96.8 0.0038 8.2E-08 65.3 8.4 101 170-287 102-205 (248)
205 TIGR00763 lon ATP-dependent pr 96.8 0.0089 1.9E-07 74.6 13.2 166 142-319 320-505 (775)
206 PF10443 RNA12: RNA12 protein; 96.8 0.06 1.3E-06 59.6 17.5 207 147-370 1-297 (431)
207 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0012 2.7E-08 71.7 4.6 52 143-194 52-103 (361)
208 PF02562 PhoH: PhoH-like prote 96.8 0.0057 1.2E-07 61.5 8.9 131 146-288 4-156 (205)
209 PRK07261 topology modulation p 96.8 0.0034 7.5E-08 62.2 7.4 23 171-193 2-24 (171)
210 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0067 1.5E-07 76.4 11.7 138 142-287 565-717 (852)
211 COG2607 Predicted ATPase (AAA+ 96.8 0.0085 1.8E-07 59.7 9.7 123 139-288 57-183 (287)
212 PF04665 Pox_A32: Poxvirus A32 96.8 0.0025 5.4E-08 65.5 6.2 35 171-208 15-49 (241)
213 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0047 1E-07 77.0 9.5 135 142-286 566-717 (852)
214 COG0470 HolB ATPase involved i 96.7 0.016 3.4E-07 65.1 13.0 146 143-308 2-170 (325)
215 PTZ00494 tuzin-like protein; P 96.7 0.26 5.7E-06 54.2 20.9 168 138-318 367-543 (664)
216 PRK06921 hypothetical protein; 96.7 0.0081 1.7E-07 64.1 9.8 100 169-287 117-224 (266)
217 PRK13531 regulatory ATPase Rav 96.7 0.0059 1.3E-07 69.0 9.1 152 142-318 20-193 (498)
218 PRK09183 transposase/IS protei 96.7 0.0075 1.6E-07 64.2 9.5 100 170-287 103-205 (259)
219 PRK06964 DNA polymerase III su 96.7 0.054 1.2E-06 59.6 16.3 95 247-353 131-226 (342)
220 KOG1514 Origin recognition com 96.7 0.042 9E-07 63.6 15.6 206 141-354 395-623 (767)
221 PRK04132 replication factor C 96.6 0.04 8.7E-07 67.5 16.4 159 177-354 574-733 (846)
222 PRK11034 clpA ATP-dependent Cl 96.6 0.013 2.8E-07 71.7 12.2 133 143-286 459-606 (758)
223 PF07728 AAA_5: AAA domain (dy 96.6 0.00085 1.8E-08 64.3 1.6 88 172-272 2-89 (139)
224 KOG0741 AAA+-type ATPase [Post 96.6 0.042 9.1E-07 61.1 14.4 162 167-356 536-716 (744)
225 PRK09361 radB DNA repair and r 96.6 0.013 2.7E-07 61.6 10.3 46 168-217 22-67 (225)
226 KOG2228 Origin recognition com 96.5 0.013 2.8E-07 61.5 9.5 172 142-319 24-219 (408)
227 COG0542 clpA ATP-binding subun 96.5 0.012 2.5E-07 70.4 10.4 135 142-286 491-642 (786)
228 KOG2739 Leucine-rich acidic nu 96.5 0.00091 2E-08 67.7 1.1 80 964-1045 44-125 (260)
229 TIGR01243 CDC48 AAA family ATP 96.5 0.032 6.9E-07 69.6 14.8 182 141-347 177-382 (733)
230 cd01133 F1-ATPase_beta F1 ATP 96.5 0.014 2.9E-07 61.5 9.5 86 170-257 70-172 (274)
231 TIGR02237 recomb_radB DNA repa 96.5 0.011 2.5E-07 61.1 9.0 87 167-257 10-106 (209)
232 CHL00195 ycf46 Ycf46; Provisio 96.4 0.039 8.4E-07 64.0 13.9 160 142-321 228-407 (489)
233 PRK10865 protein disaggregatio 96.4 0.017 3.8E-07 72.4 11.8 125 142-275 568-697 (857)
234 TIGR01243 CDC48 AAA family ATP 96.4 0.067 1.4E-06 66.7 17.0 180 142-346 453-657 (733)
235 TIGR02902 spore_lonB ATP-depen 96.4 0.014 2.9E-07 69.2 10.3 172 142-319 65-276 (531)
236 PHA00729 NTP-binding motif con 96.4 0.017 3.8E-07 58.7 9.5 25 168-192 16-40 (226)
237 PRK04296 thymidine kinase; Pro 96.4 0.009 2E-07 60.4 7.4 112 170-289 3-117 (190)
238 KOG0733 Nuclear AAA ATPase (VC 96.3 0.1 2.2E-06 59.3 15.5 98 141-258 189-292 (802)
239 CHL00095 clpC Clp protease ATP 96.3 0.021 4.5E-07 71.9 11.4 138 142-287 509-661 (821)
240 KOG0730 AAA+-type ATPase [Post 96.3 0.051 1.1E-06 62.5 13.1 160 142-321 434-617 (693)
241 PF13207 AAA_17: AAA domain; P 96.2 0.0032 7E-08 58.6 3.1 22 171-192 1-22 (121)
242 PF00448 SRP54: SRP54-type pro 96.2 0.034 7.4E-07 56.2 10.6 87 169-258 1-93 (196)
243 KOG0735 AAA+-type ATPase [Post 96.2 0.036 7.9E-07 63.9 11.5 163 168-352 430-616 (952)
244 COG1223 Predicted ATPase (AAA+ 96.2 0.075 1.6E-06 53.6 12.1 179 141-345 120-318 (368)
245 KOG2123 Uncharacterized conser 96.2 0.00041 9E-09 69.9 -3.5 99 555-656 18-123 (388)
246 PRK05541 adenylylsulfate kinas 96.1 0.011 2.4E-07 59.2 6.6 36 168-206 6-41 (176)
247 KOG1969 DNA replication checkp 96.1 0.02 4.3E-07 66.3 8.9 85 167-271 324-410 (877)
248 KOG2004 Mitochondrial ATP-depe 96.1 0.0083 1.8E-07 69.0 5.8 106 141-258 410-515 (906)
249 PRK08699 DNA polymerase III su 96.1 0.059 1.3E-06 59.3 12.4 72 247-318 112-184 (325)
250 PRK00625 shikimate kinase; Pro 96.0 0.033 7.3E-07 55.0 9.1 22 171-192 2-23 (173)
251 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.021 4.5E-07 60.5 8.3 52 168-219 18-72 (235)
252 cd01120 RecA-like_NTPases RecA 96.0 0.047 1E-06 53.9 10.3 40 171-213 1-40 (165)
253 PRK06835 DNA replication prote 96.0 0.018 3.8E-07 63.2 7.7 102 170-287 184-288 (329)
254 PRK06696 uridine kinase; Valid 96.0 0.0088 1.9E-07 62.5 5.2 44 146-192 2-45 (223)
255 PF14532 Sigma54_activ_2: Sigm 96.0 0.0097 2.1E-07 56.7 5.1 108 145-288 1-110 (138)
256 PF00158 Sigma54_activat: Sigm 95.9 0.02 4.4E-07 56.2 7.1 129 144-287 1-143 (168)
257 PF00560 LRR_1: Leucine Rich R 95.9 0.0036 7.9E-08 37.5 1.2 19 581-599 2-20 (22)
258 PRK10867 signal recognition pa 95.9 0.066 1.4E-06 60.9 12.1 24 168-191 99-122 (433)
259 PF07693 KAP_NTPase: KAP famil 95.9 0.13 2.8E-06 57.6 14.6 44 148-194 2-45 (325)
260 PRK13948 shikimate kinase; Pro 95.9 0.046 9.9E-07 54.4 9.5 25 168-192 9-33 (182)
261 PF08423 Rad51: Rad51; InterP 95.9 0.027 5.9E-07 59.8 8.4 55 169-224 38-95 (256)
262 PF13604 AAA_30: AAA domain; P 95.9 0.045 9.7E-07 55.7 9.6 103 170-287 19-130 (196)
263 COG2884 FtsE Predicted ATPase 95.9 0.07 1.5E-06 51.5 9.9 60 236-295 143-204 (223)
264 cd01394 radB RadB. The archaea 95.9 0.052 1.1E-06 56.6 10.3 43 168-213 18-60 (218)
265 PRK15455 PrkA family serine pr 95.8 0.0064 1.4E-07 69.6 3.5 50 143-192 77-126 (644)
266 cd00544 CobU Adenosylcobinamid 95.8 0.03 6.4E-07 55.0 7.8 79 172-257 2-82 (169)
267 PRK05800 cobU adenosylcobinami 95.8 0.0076 1.6E-07 59.3 3.6 79 171-257 3-85 (170)
268 KOG2739 Leucine-rich acidic nu 95.8 0.0039 8.5E-08 63.2 1.5 108 937-1045 39-152 (260)
269 PHA02244 ATPase-like protein 95.8 0.07 1.5E-06 58.3 11.0 35 150-192 108-142 (383)
270 PRK13695 putative NTPase; Prov 95.8 0.013 2.7E-07 58.6 5.0 23 171-193 2-24 (174)
271 PF13306 LRR_5: Leucine rich r 95.7 0.051 1.1E-06 51.1 8.5 104 936-1045 7-112 (129)
272 TIGR00959 ffh signal recogniti 95.6 0.087 1.9E-06 59.9 11.5 25 168-192 98-122 (428)
273 PRK04301 radA DNA repair and r 95.6 0.059 1.3E-06 59.6 10.1 53 168-220 101-156 (317)
274 cd01131 PilT Pilus retraction 95.6 0.019 4.1E-07 58.5 5.7 111 170-292 2-113 (198)
275 COG0542 clpA ATP-binding subun 95.6 0.035 7.5E-07 66.5 8.5 159 142-319 170-346 (786)
276 PRK11889 flhF flagellar biosyn 95.5 0.21 4.6E-06 55.1 13.4 101 168-272 240-346 (436)
277 TIGR01650 PD_CobS cobaltochela 95.5 0.23 5.1E-06 53.7 13.6 61 143-217 46-106 (327)
278 COG1618 Predicted nucleotide k 95.5 0.015 3.2E-07 54.3 3.9 24 170-193 6-29 (179)
279 COG0468 RecA RecA/RadA recombi 95.5 0.083 1.8E-06 55.9 9.9 89 167-258 58-151 (279)
280 PLN03187 meiotic recombination 95.4 0.058 1.3E-06 59.3 9.0 58 168-226 125-185 (344)
281 KOG2123 Uncharacterized conser 95.4 0.0017 3.7E-08 65.6 -2.5 82 550-632 35-123 (388)
282 cd01393 recA_like RecA is a b 95.4 0.1 2.2E-06 54.8 10.7 90 168-258 18-124 (226)
283 TIGR02012 tigrfam_recA protein 95.4 0.046 1E-06 59.3 8.1 84 167-258 53-143 (321)
284 TIGR02238 recomb_DMC1 meiotic 95.4 0.058 1.3E-06 58.9 8.8 58 168-226 95-155 (313)
285 TIGR01359 UMP_CMP_kin_fam UMP- 95.4 0.092 2E-06 53.0 9.8 21 171-191 1-21 (183)
286 PRK06067 flagellar accessory p 95.4 0.1 2.2E-06 55.1 10.4 86 167-258 23-130 (234)
287 PRK00771 signal recognition pa 95.4 0.26 5.5E-06 56.4 14.1 26 168-193 94-119 (437)
288 cd00983 recA RecA is a bacter 95.4 0.056 1.2E-06 58.7 8.4 83 167-257 53-142 (325)
289 TIGR03499 FlhF flagellar biosy 95.3 0.073 1.6E-06 57.5 9.3 27 168-194 193-219 (282)
290 KOG0728 26S proteasome regulat 95.3 0.95 2.1E-05 45.5 15.8 193 143-357 147-368 (404)
291 COG1484 DnaC DNA replication p 95.3 0.11 2.3E-06 55.1 10.2 80 170-266 106-185 (254)
292 PF03215 Rad17: Rad17 cell cyc 95.3 0.059 1.3E-06 62.9 9.0 62 142-209 19-80 (519)
293 PLN00020 ribulose bisphosphate 95.3 0.047 1E-06 59.1 7.5 26 167-192 146-171 (413)
294 COG0572 Udk Uridine kinase [Nu 95.3 0.04 8.8E-07 55.3 6.6 77 167-249 6-85 (218)
295 TIGR02236 recomb_radA DNA repa 95.3 0.095 2.1E-06 57.9 10.3 53 168-220 94-149 (310)
296 KOG0731 AAA+-type ATPase conta 95.3 0.33 7.1E-06 58.1 14.9 183 141-348 310-520 (774)
297 KOG1947 Leucine rich repeat pr 95.2 0.00081 1.7E-08 80.5 -6.8 183 936-1119 209-416 (482)
298 PF00485 PRK: Phosphoribulokin 95.2 0.062 1.3E-06 54.7 8.0 79 171-252 1-87 (194)
299 PRK07667 uridine kinase; Provi 95.2 0.024 5.3E-07 57.5 5.0 38 151-192 3-40 (193)
300 TIGR02239 recomb_RAD51 DNA rep 95.2 0.091 2E-06 57.6 9.7 57 168-225 95-154 (316)
301 PF00560 LRR_1: Leucine Rich R 95.2 0.011 2.4E-07 35.4 1.5 22 557-578 1-22 (22)
302 PRK09354 recA recombinase A; P 95.2 0.07 1.5E-06 58.4 8.6 84 167-258 58-148 (349)
303 PRK14974 cell division protein 95.2 0.2 4.4E-06 55.0 12.1 99 168-270 139-246 (336)
304 cd00561 CobA_CobO_BtuR ATP:cor 95.2 0.26 5.6E-06 47.5 11.3 116 170-289 3-139 (159)
305 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.032 6.9E-07 57.5 5.6 120 169-294 29-160 (213)
306 PRK10733 hflB ATP-dependent me 95.1 0.23 5E-06 60.5 13.7 158 142-319 152-335 (644)
307 PTZ00301 uridine kinase; Provi 95.1 0.03 6.4E-07 57.2 5.2 23 169-191 3-25 (210)
308 smart00534 MUTSac ATPase domai 95.1 0.014 3E-07 58.9 2.7 117 171-294 1-128 (185)
309 cd03115 SRP The signal recogni 95.1 0.22 4.8E-06 49.7 11.4 23 171-193 2-24 (173)
310 PRK11608 pspF phage shock prot 95.1 0.068 1.5E-06 59.2 8.4 134 142-287 6-150 (326)
311 PRK15429 formate hydrogenlyase 95.1 0.1 2.2E-06 64.6 10.7 133 142-287 376-520 (686)
312 KOG1051 Chaperone HSP104 and r 95.0 0.15 3.2E-06 62.3 11.3 122 143-275 563-687 (898)
313 cd03247 ABCC_cytochrome_bd The 95.0 0.12 2.5E-06 51.9 9.1 116 170-292 29-161 (178)
314 TIGR02974 phageshock_pspF psp 95.0 0.072 1.6E-06 59.0 8.2 130 144-287 1-143 (329)
315 KOG0733 Nuclear AAA ATPase (VC 95.0 0.46 9.9E-06 54.4 14.2 179 146-346 515-718 (802)
316 PRK07132 DNA polymerase III su 95.0 0.66 1.4E-05 50.3 15.2 158 169-351 18-184 (299)
317 COG1428 Deoxynucleoside kinase 95.0 0.018 3.8E-07 56.9 2.8 26 169-194 4-29 (216)
318 PF01583 APS_kinase: Adenylyls 94.9 0.039 8.4E-07 52.8 5.1 36 169-207 2-37 (156)
319 PTZ00088 adenylate kinase 1; P 94.9 0.03 6.5E-07 58.1 4.6 22 171-192 8-29 (229)
320 KOG0473 Leucine-rich repeat pr 94.9 0.0011 2.4E-08 65.1 -5.5 87 551-638 37-123 (326)
321 COG5238 RNA1 Ran GTPase-activa 94.9 0.0059 1.3E-07 61.7 -0.6 90 574-663 25-133 (388)
322 TIGR00064 ftsY signal recognit 94.8 0.18 4E-06 54.0 10.4 87 168-258 71-164 (272)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.18 4E-06 48.3 9.5 103 170-291 27-130 (144)
324 cd01122 GP4d_helicase GP4d_hel 94.8 0.3 6.4E-06 53.0 12.4 52 170-225 31-82 (271)
325 COG0464 SpoVK ATPases of the A 94.8 0.51 1.1E-05 56.1 15.2 134 167-320 274-424 (494)
326 PF13238 AAA_18: AAA domain; P 94.8 0.021 4.6E-07 53.7 2.8 21 172-192 1-21 (129)
327 COG1121 ZnuC ABC-type Mn/Zn tr 94.8 0.22 4.8E-06 51.6 10.3 22 170-191 31-52 (254)
328 cd02019 NK Nucleoside/nucleoti 94.7 0.023 5E-07 46.3 2.6 22 171-192 1-22 (69)
329 PRK09270 nucleoside triphospha 94.7 0.11 2.3E-06 54.6 8.3 26 167-192 31-56 (229)
330 COG0714 MoxR-like ATPases [Gen 94.7 0.066 1.4E-06 59.7 7.2 108 143-273 25-137 (329)
331 PRK12724 flagellar biosynthesi 94.7 0.18 3.9E-06 56.4 10.2 25 169-193 223-247 (432)
332 PRK05703 flhF flagellar biosyn 94.7 0.38 8.2E-06 55.2 13.2 85 170-258 222-309 (424)
333 cd03216 ABC_Carb_Monos_I This 94.7 0.091 2E-06 51.7 7.2 114 170-290 27-144 (163)
334 cd03238 ABC_UvrA The excision 94.7 0.19 4E-06 49.9 9.3 113 170-292 22-153 (176)
335 COG0563 Adk Adenylate kinase a 94.7 0.054 1.2E-06 53.7 5.5 22 171-192 2-23 (178)
336 PRK12723 flagellar biosynthesi 94.7 0.27 5.9E-06 55.2 11.6 89 168-259 173-265 (388)
337 KOG2035 Replication factor C, 94.7 0.25 5.4E-06 50.7 10.0 209 143-373 14-259 (351)
338 PRK05022 anaerobic nitric oxid 94.6 0.1 2.2E-06 61.9 8.8 135 140-287 185-331 (509)
339 cd03223 ABCD_peroxisomal_ALDP 94.6 0.29 6.3E-06 48.3 10.6 114 170-291 28-151 (166)
340 COG1102 Cmk Cytidylate kinase 94.6 0.037 8.1E-07 51.8 3.9 42 171-226 2-43 (179)
341 cd03214 ABC_Iron-Siderophores_ 94.6 0.29 6.2E-06 49.2 10.7 117 170-291 26-161 (180)
342 TIGR01069 mutS2 MutS2 family p 94.6 0.064 1.4E-06 66.2 7.1 185 169-370 322-518 (771)
343 PRK05480 uridine/cytidine kina 94.6 0.03 6.6E-07 57.9 3.7 25 168-192 5-29 (209)
344 cd03222 ABC_RNaseL_inhibitor T 94.6 0.19 4E-06 49.9 9.0 102 170-292 26-136 (177)
345 TIGR01817 nifA Nif-specific re 94.6 0.097 2.1E-06 62.8 8.4 132 141-287 195-340 (534)
346 TIGR02858 spore_III_AA stage I 94.6 0.17 3.8E-06 53.8 9.3 126 151-292 98-233 (270)
347 PF08298 AAA_PrkA: PrkA AAA do 94.5 0.043 9.4E-07 59.2 4.8 51 141-191 60-110 (358)
348 PRK05439 pantothenate kinase; 94.5 0.22 4.9E-06 53.8 10.2 25 167-191 84-108 (311)
349 cd02025 PanK Pantothenate kina 94.5 0.14 3E-06 53.1 8.4 22 171-192 1-22 (220)
350 TIGR01425 SRP54_euk signal rec 94.5 0.29 6.4E-06 55.3 11.5 25 168-192 99-123 (429)
351 PRK08233 hypothetical protein; 94.5 0.03 6.4E-07 56.6 3.4 24 169-192 3-26 (182)
352 PF00006 ATP-synt_ab: ATP synt 94.5 0.11 2.4E-06 53.1 7.4 83 170-257 16-114 (215)
353 PRK00889 adenylylsulfate kinas 94.5 0.12 2.6E-06 51.6 7.6 25 169-193 4-28 (175)
354 TIGR00235 udk uridine kinase. 94.4 0.035 7.5E-07 57.3 3.7 25 168-192 5-29 (207)
355 PRK05917 DNA polymerase III su 94.4 0.76 1.7E-05 49.1 13.5 133 150-306 5-154 (290)
356 TIGR00554 panK_bact pantothena 94.4 0.21 4.4E-06 53.7 9.4 25 167-191 60-84 (290)
357 PLN03186 DNA repair protein RA 94.3 0.3 6.6E-06 53.9 10.9 58 168-226 122-182 (342)
358 KOG0734 AAA+-type ATPase conta 94.3 0.31 6.7E-06 54.6 10.6 53 142-194 304-362 (752)
359 PRK14722 flhF flagellar biosyn 94.3 0.14 3.1E-06 56.8 8.4 86 169-259 137-226 (374)
360 cd03284 ABC_MutS1 MutS1 homolo 94.3 0.05 1.1E-06 56.2 4.5 22 170-191 31-52 (216)
361 COG0541 Ffh Signal recognition 94.3 0.96 2.1E-05 50.2 14.2 73 150-226 78-155 (451)
362 PTZ00035 Rad51 protein; Provis 94.3 0.27 5.8E-06 54.5 10.4 57 168-225 117-176 (337)
363 TIGR03877 thermo_KaiC_1 KaiC d 94.3 0.36 7.8E-06 50.9 11.1 48 168-220 20-67 (237)
364 cd03228 ABCC_MRP_Like The MRP 94.3 0.24 5.1E-06 49.3 9.2 116 170-293 29-160 (171)
365 PF07726 AAA_3: ATPase family 94.2 0.046 9.9E-07 49.7 3.5 26 172-199 2-27 (131)
366 PRK06547 hypothetical protein; 94.2 0.043 9.3E-07 54.2 3.6 25 168-192 14-38 (172)
367 PF13671 AAA_33: AAA domain; P 94.2 0.037 7.9E-07 53.3 3.1 21 171-191 1-21 (143)
368 PRK00279 adk adenylate kinase; 94.2 0.23 4.9E-06 51.6 9.2 21 171-191 2-22 (215)
369 PRK06762 hypothetical protein; 94.2 0.039 8.4E-07 54.7 3.3 24 169-192 2-25 (166)
370 PRK12727 flagellar biosynthesi 94.1 0.24 5.2E-06 57.0 9.7 24 169-192 350-373 (559)
371 cd02027 APSK Adenosine 5'-phos 94.1 0.16 3.4E-06 49.1 7.3 22 171-192 1-22 (149)
372 PF07724 AAA_2: AAA domain (Cd 94.1 0.047 1E-06 53.8 3.7 40 169-210 3-42 (171)
373 KOG0736 Peroxisome assembly fa 94.1 1.4 3.1E-05 52.0 15.8 98 142-259 672-775 (953)
374 PRK06217 hypothetical protein; 94.1 0.16 3.4E-06 51.2 7.6 23 171-193 3-25 (183)
375 COG1875 NYN ribonuclease and A 94.0 0.43 9.2E-06 51.2 10.5 135 146-290 228-390 (436)
376 PF03308 ArgK: ArgK protein; 94.0 0.1 2.2E-06 53.8 5.8 64 150-218 14-77 (266)
377 PF13481 AAA_25: AAA domain; P 94.0 0.2 4.4E-06 51.0 8.3 41 171-211 34-81 (193)
378 cd03283 ABC_MutS-like MutS-lik 94.0 0.23 5E-06 50.5 8.6 23 170-192 26-48 (199)
379 PRK12726 flagellar biosynthesi 93.9 0.67 1.5E-05 51.1 12.2 88 168-259 205-296 (407)
380 TIGR00390 hslU ATP-dependent p 93.9 0.13 2.9E-06 57.1 6.9 82 142-225 12-104 (441)
381 COG4618 ArpD ABC-type protease 93.9 0.18 3.8E-06 56.5 7.7 22 170-191 363-384 (580)
382 KOG0744 AAA+-type ATPase [Post 93.8 0.19 4.1E-06 52.7 7.4 79 169-257 177-259 (423)
383 PRK10463 hydrogenase nickel in 93.8 0.19 4.1E-06 53.5 7.7 26 167-192 102-127 (290)
384 PF00154 RecA: recA bacterial 93.8 0.13 2.9E-06 55.6 6.7 83 168-258 52-141 (322)
385 PF08433 KTI12: Chromatin asso 93.8 0.17 3.7E-06 53.9 7.5 24 170-193 2-25 (270)
386 PRK03839 putative kinase; Prov 93.8 0.046 1E-06 55.0 3.1 22 171-192 2-23 (180)
387 COG4088 Predicted nucleotide k 93.8 0.036 7.8E-07 53.9 2.1 22 171-192 3-24 (261)
388 TIGR00150 HI0065_YjeE ATPase, 93.8 0.089 1.9E-06 48.8 4.6 42 149-194 6-47 (133)
389 cd01121 Sms Sms (bacterial rad 93.8 0.15 3.3E-06 57.1 7.4 40 168-210 81-120 (372)
390 cd03230 ABC_DR_subfamily_A Thi 93.7 0.39 8.5E-06 47.8 9.6 116 170-292 27-159 (173)
391 PRK09280 F0F1 ATP synthase sub 93.7 0.28 6E-06 55.9 9.3 86 170-257 145-247 (463)
392 COG4608 AppF ABC-type oligopep 93.7 0.28 6.1E-06 50.9 8.5 143 170-316 40-199 (268)
393 COG2019 AdkA Archaeal adenylat 93.7 0.058 1.3E-06 50.8 3.2 23 169-191 4-26 (189)
394 PF06309 Torsin: Torsin; Inte 93.7 0.096 2.1E-06 47.5 4.5 51 142-192 25-76 (127)
395 TIGR03574 selen_PSTK L-seryl-t 93.7 0.15 3.2E-06 54.4 6.9 22 172-193 2-23 (249)
396 COG1224 TIP49 DNA helicase TIP 93.7 0.15 3.3E-06 54.1 6.6 55 141-199 38-95 (450)
397 KOG3347 Predicted nucleotide k 93.7 0.1 2.2E-06 48.1 4.5 69 169-247 7-75 (176)
398 PRK08533 flagellar accessory p 93.7 0.57 1.2E-05 49.0 11.0 48 169-221 24-71 (230)
399 PRK12678 transcription termina 93.7 0.2 4.3E-06 57.6 7.9 86 170-257 417-512 (672)
400 KOG0473 Leucine-rich repeat pr 93.6 0.0034 7.3E-08 61.8 -5.1 89 568-658 30-119 (326)
401 PRK04040 adenylate kinase; Pro 93.6 0.055 1.2E-06 54.4 3.2 23 170-192 3-25 (188)
402 PF00910 RNA_helicase: RNA hel 93.6 0.043 9.3E-07 49.4 2.2 22 172-193 1-22 (107)
403 PRK10416 signal recognition pa 93.6 0.84 1.8E-05 50.1 12.6 26 168-193 113-138 (318)
404 TIGR01360 aden_kin_iso1 adenyl 93.6 0.054 1.2E-06 55.0 3.2 25 168-192 2-26 (188)
405 cd03246 ABCC_Protease_Secretio 93.6 0.24 5.2E-06 49.4 7.7 115 170-292 29-160 (173)
406 PRK10820 DNA-binding transcrip 93.5 0.2 4.4E-06 59.5 8.3 133 141-288 203-349 (520)
407 KOG1947 Leucine rich repeat pr 93.5 0.0065 1.4E-07 72.7 -4.4 107 940-1046 187-305 (482)
408 PF13306 LRR_5: Leucine rich r 93.5 0.27 5.8E-06 46.1 7.6 82 549-635 28-112 (129)
409 cd03232 ABC_PDR_domain2 The pl 93.4 0.28 6.1E-06 49.8 8.1 22 170-191 34-55 (192)
410 COG1703 ArgK Putative periplas 93.4 0.12 2.6E-06 53.9 5.1 63 152-219 38-100 (323)
411 PF13504 LRR_7: Leucine rich r 93.3 0.05 1.1E-06 30.1 1.3 14 581-594 3-16 (17)
412 PRK10751 molybdopterin-guanine 93.3 0.082 1.8E-06 51.7 3.7 25 168-192 5-29 (173)
413 KOG0729 26S proteasome regulat 93.3 0.48 1E-05 48.0 9.0 56 142-199 177-239 (435)
414 cd02024 NRK1 Nicotinamide ribo 93.3 0.056 1.2E-06 53.9 2.6 22 171-192 1-22 (187)
415 KOG2170 ATPase of the AAA+ sup 93.2 0.29 6.3E-06 51.0 7.6 114 143-272 83-202 (344)
416 PRK04328 hypothetical protein; 93.2 0.36 7.7E-06 51.3 8.7 41 168-211 22-62 (249)
417 cd02023 UMPK Uridine monophosp 93.2 0.057 1.2E-06 55.3 2.6 22 171-192 1-22 (198)
418 TIGR01420 pilT_fam pilus retra 93.2 0.24 5.2E-06 55.4 7.7 110 170-291 123-233 (343)
419 COG1936 Predicted nucleotide k 93.1 0.065 1.4E-06 51.1 2.6 20 171-190 2-21 (180)
420 PRK05201 hslU ATP-dependent pr 93.1 0.22 4.7E-06 55.6 7.0 51 142-192 15-73 (443)
421 TIGR02322 phosphon_PhnN phosph 93.1 0.072 1.6E-06 53.5 3.1 23 170-192 2-24 (179)
422 cd01125 repA Hexameric Replica 93.0 0.62 1.3E-05 49.3 10.2 23 171-193 3-25 (239)
423 COG4240 Predicted kinase [Gene 93.0 0.6 1.3E-05 46.5 8.9 81 167-249 48-134 (300)
424 cd02028 UMPK_like Uridine mono 93.0 0.094 2E-06 52.4 3.7 22 171-192 1-22 (179)
425 PLN02348 phosphoribulokinase 92.9 0.33 7.1E-06 53.8 8.1 26 167-192 47-72 (395)
426 cd03285 ABC_MSH2_euk MutS2 hom 92.9 0.093 2E-06 54.4 3.7 174 169-358 30-219 (222)
427 COG0194 Gmk Guanylate kinase [ 92.9 0.13 2.7E-06 50.0 4.2 24 170-193 5-28 (191)
428 PRK15453 phosphoribulokinase; 92.8 0.62 1.3E-05 49.1 9.5 24 168-191 4-27 (290)
429 PF06745 KaiC: KaiC; InterPro 92.8 0.27 5.9E-06 51.5 7.2 85 168-257 18-124 (226)
430 PRK12597 F0F1 ATP synthase sub 92.8 0.41 9E-06 54.7 8.9 86 170-257 144-246 (461)
431 PRK00131 aroK shikimate kinase 92.8 0.082 1.8E-06 52.9 3.1 23 170-192 5-27 (175)
432 PRK13949 shikimate kinase; Pro 92.8 0.15 3.3E-06 50.3 4.9 22 171-192 3-24 (169)
433 PRK14528 adenylate kinase; Pro 92.8 0.14 3.1E-06 51.5 4.8 23 170-192 2-24 (186)
434 KOG0743 AAA+-type ATPase [Post 92.8 1.8 4E-05 48.2 13.4 152 170-356 236-413 (457)
435 PRK00409 recombination and DNA 92.8 0.11 2.4E-06 64.4 4.7 187 168-370 326-523 (782)
436 COG0396 sufC Cysteine desulfur 92.8 0.84 1.8E-05 46.0 9.8 58 240-297 154-213 (251)
437 PF01078 Mg_chelatase: Magnesi 92.8 0.16 3.5E-06 50.8 5.0 42 142-191 3-44 (206)
438 cd03282 ABC_MSH4_euk MutS4 hom 92.8 0.15 3.3E-06 52.0 4.9 118 170-295 30-158 (204)
439 PRK14721 flhF flagellar biosyn 92.7 0.58 1.3E-05 53.0 9.9 24 169-192 191-214 (420)
440 TIGR00708 cobA cob(I)alamin ad 92.7 0.72 1.6E-05 45.0 9.2 114 170-288 6-140 (173)
441 PRK10875 recD exonuclease V su 92.7 0.83 1.8E-05 54.8 11.6 118 170-290 168-304 (615)
442 PF03205 MobB: Molybdopterin g 92.7 0.095 2.1E-06 49.7 3.1 39 170-210 1-39 (140)
443 KOG3864 Uncharacterized conser 92.7 0.012 2.6E-07 57.2 -2.9 79 1013-1092 103-187 (221)
444 cd02021 GntK Gluconate kinase 92.6 0.077 1.7E-06 51.5 2.6 22 171-192 1-22 (150)
445 cd01135 V_A-ATPase_B V/A-type 92.6 0.59 1.3E-05 49.3 9.1 87 170-257 70-175 (276)
446 COG3640 CooC CO dehydrogenase 92.6 0.2 4.3E-06 50.4 5.3 21 171-191 2-22 (255)
447 PRK14723 flhF flagellar biosyn 92.6 0.88 1.9E-05 55.3 11.7 86 169-258 185-273 (767)
448 COG4167 SapF ABC-type antimicr 92.6 0.28 6.2E-06 46.8 5.9 22 170-191 40-61 (267)
449 cd00227 CPT Chloramphenicol (C 92.6 0.09 1.9E-06 52.5 3.0 23 170-192 3-25 (175)
450 PF05659 RPW8: Arabidopsis bro 92.6 1.1 2.4E-05 42.5 10.1 81 4-88 6-87 (147)
451 COG0003 ArsA Predicted ATPase 92.6 0.21 4.5E-06 54.4 5.9 48 169-219 2-49 (322)
452 COG0467 RAD55 RecA-superfamily 92.5 0.16 3.5E-06 54.5 5.1 42 167-211 21-62 (260)
453 PTZ00185 ATPase alpha subunit; 92.5 0.54 1.2E-05 53.6 9.1 88 170-258 190-299 (574)
454 PRK13947 shikimate kinase; Pro 92.5 0.088 1.9E-06 52.4 2.8 21 171-191 3-23 (171)
455 cd03243 ABC_MutS_homologs The 92.5 0.14 3E-06 52.5 4.4 23 170-192 30-52 (202)
456 TIGR03878 thermo_KaiC_2 KaiC d 92.5 0.69 1.5E-05 49.4 9.8 40 168-210 35-74 (259)
457 PRK03846 adenylylsulfate kinas 92.5 0.11 2.5E-06 53.0 3.7 25 168-192 23-47 (198)
458 KOG1532 GTPase XAB1, interacts 92.5 0.095 2.1E-06 53.3 2.9 28 167-194 17-44 (366)
459 cd00267 ABC_ATPase ABC (ATP-bi 92.5 0.31 6.7E-06 47.6 6.6 118 170-293 26-145 (157)
460 COG0529 CysC Adenylylsulfate k 92.5 0.12 2.7E-06 49.2 3.5 25 168-192 22-46 (197)
461 COG0237 CoaE Dephospho-CoA kin 92.4 0.26 5.6E-06 49.8 6.0 22 170-191 3-24 (201)
462 TIGR03263 guanyl_kin guanylate 92.4 0.096 2.1E-06 52.7 3.0 22 170-191 2-23 (180)
463 PF08477 Miro: Miro-like prote 92.3 0.11 2.3E-06 48.1 3.0 23 172-194 2-24 (119)
464 PRK14526 adenylate kinase; Pro 92.3 0.23 5E-06 50.9 5.6 20 172-191 3-22 (211)
465 TIGR01039 atpD ATP synthase, F 92.3 0.58 1.3E-05 53.1 9.1 86 170-257 144-246 (461)
466 cd02020 CMPK Cytidine monophos 92.3 0.093 2E-06 50.7 2.6 22 171-192 1-22 (147)
467 cd01428 ADK Adenylate kinase ( 92.2 0.44 9.5E-06 48.6 7.7 21 172-192 2-22 (194)
468 PRK08972 fliI flagellum-specif 92.2 0.49 1.1E-05 53.4 8.4 83 170-257 163-261 (444)
469 PF03193 DUF258: Protein of un 92.2 0.22 4.7E-06 48.0 4.9 37 148-193 23-59 (161)
470 COG0465 HflB ATP-dependent Zn 92.2 2.2 4.9E-05 50.1 13.9 56 140-195 148-209 (596)
471 TIGR01351 adk adenylate kinase 92.2 0.5 1.1E-05 48.8 8.0 20 172-191 2-21 (210)
472 PF03266 NTPase_1: NTPase; In 92.2 0.11 2.3E-06 51.1 2.8 22 172-193 2-23 (168)
473 PRK08927 fliI flagellum-specif 92.2 0.56 1.2E-05 53.2 8.8 84 169-257 158-257 (442)
474 PRK06002 fliI flagellum-specif 92.2 0.5 1.1E-05 53.7 8.4 84 170-257 166-263 (450)
475 cd03213 ABCG_EPDR ABCG transpo 92.1 0.65 1.4E-05 47.2 8.7 23 170-192 36-58 (194)
476 cd03217 ABC_FeS_Assembly ABC-t 92.1 0.61 1.3E-05 47.7 8.6 23 170-192 27-49 (200)
477 PRK06995 flhF flagellar biosyn 92.1 0.89 1.9E-05 52.4 10.5 25 169-193 256-280 (484)
478 COG4639 Predicted kinase [Gene 92.1 0.11 2.4E-06 48.5 2.6 23 169-191 2-24 (168)
479 cd01129 PulE-GspE PulE/GspE Th 92.1 0.34 7.4E-06 51.8 6.8 106 170-290 81-186 (264)
480 PF00625 Guanylate_kin: Guanyl 92.1 0.15 3.2E-06 51.4 3.9 35 170-207 3-37 (183)
481 PF13504 LRR_7: Leucine rich r 92.1 0.099 2.1E-06 29.0 1.4 17 556-572 1-17 (17)
482 PRK12339 2-phosphoglycerate ki 92.1 0.13 2.8E-06 52.0 3.4 24 169-192 3-26 (197)
483 PRK14531 adenylate kinase; Pro 92.0 0.41 8.9E-06 48.2 7.0 22 171-192 4-25 (183)
484 TIGR03881 KaiC_arch_4 KaiC dom 92.0 1.2 2.5E-05 46.9 10.8 41 168-211 19-59 (229)
485 cd04159 Arl10_like Arl10-like 91.9 0.49 1.1E-05 46.1 7.4 21 172-192 2-22 (159)
486 TIGR03575 selen_PSTK_euk L-ser 91.9 0.49 1.1E-05 52.0 7.8 22 172-193 2-23 (340)
487 KOG0652 26S proteasome regulat 91.9 0.65 1.4E-05 47.0 7.8 56 142-199 171-233 (424)
488 PRK07276 DNA polymerase III su 91.8 5 0.00011 43.2 15.1 69 247-316 103-172 (290)
489 cd02029 PRK_like Phosphoribulo 91.8 0.44 9.6E-06 49.8 7.0 76 171-249 1-85 (277)
490 cd01134 V_A-ATPase_A V/A-type 91.8 0.92 2E-05 49.4 9.6 47 170-221 158-205 (369)
491 PF06068 TIP49: TIP49 C-termin 91.8 0.28 6E-06 53.3 5.6 52 142-199 24-78 (398)
492 PRK14530 adenylate kinase; Pro 91.8 0.12 2.6E-06 53.6 3.0 22 171-192 5-26 (215)
493 cd00071 GMPK Guanosine monopho 91.8 0.12 2.5E-06 49.1 2.6 21 172-192 2-22 (137)
494 cd00820 PEPCK_HprK Phosphoenol 91.8 0.15 3.2E-06 45.2 3.0 21 170-190 16-36 (107)
495 PRK10078 ribose 1,5-bisphospho 91.8 0.13 2.8E-06 52.0 3.1 22 171-192 4-25 (186)
496 PRK00300 gmk guanylate kinase; 91.8 0.13 2.9E-06 53.0 3.2 24 169-192 5-28 (205)
497 COG1066 Sms Predicted ATP-depe 91.8 0.65 1.4E-05 50.9 8.3 95 150-258 78-178 (456)
498 PHA02774 E1; Provisional 91.7 0.62 1.3E-05 54.0 8.6 49 151-209 421-469 (613)
499 cd03287 ABC_MSH3_euk MutS3 hom 91.7 0.22 4.7E-06 51.5 4.6 118 170-294 32-160 (222)
500 PRK13975 thymidylate kinase; P 91.7 0.14 3E-06 52.4 3.3 24 170-193 3-26 (196)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-85 Score=787.02 Aligned_cols=613 Identities=29% Similarity=0.421 Sum_probs=485.1
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHHHhhHhHHHHhhhHHHHHHHhhhhcc----
Q 044085 26 QLFARRGQIEADLKKWEELLLTIKVVLDDAEEKQITKPSVKTWLGKLQNLAFDAEDMLDEFATEAFRRKLLLLEQA---- 101 (1151)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~~d~ed~ld~~~~~~~~~~~~~~~~~---- 101 (1151)
.++....+.++.+..|++.|..++.+++||++++.....++.|.+.+++++|++||.++.|.......+..+....
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~ 97 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVE 97 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHH
Confidence 3444555677899999999999999999999998888889999999999999999999999887654433221110
Q ss_pred ----cCCCcc-----------------cccccccCceeccCCccc-cccccCCCCcccCCCCCccccchhhHHHHHHHHh
Q 044085 102 ----DRRPTG-----------------TTKKDKLDLKEISGGFRY-GRVRERPLSTTSLVDEDEVYGREKDKEALVGLLR 159 (1151)
Q Consensus 102 ----~~~~~~-----------------~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vgr~~~~~~l~~~L~ 159 (1151)
....+. ......++.+...+.... ....... ++.+...... ||.++.++++.+.|.
T Consensus 98 ~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~-e~~~~~~~~~-VG~e~~~~kl~~~L~ 175 (889)
T KOG4658|consen 98 RQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKV-ETRPIQSESD-VGLETMLEKLWNRLM 175 (889)
T ss_pred HHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhc-ccCCCCcccc-ccHHHHHHHHHHHhc
Confidence 000000 000011111110000000 0000011 2333344444 999999999999998
Q ss_pred cCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh-hhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC---CCCcchH
Q 044085 160 RDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR-VEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS---VDVNDLN 235 (1151)
Q Consensus 160 ~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~---~~~~~~~ 235 (1151)
+++ ..+++|+||||+||||||++++|+.. ++.+| +.++||+||+.|+..+++++|++.++.. ......+
T Consensus 176 ~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~F-d~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~ 248 (889)
T KOG4658|consen 176 EDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHF-DGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEED 248 (889)
T ss_pred cCC------CCEEEEECCCcccHHHHHHHHhcccchhcccC-ceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHH
Confidence 875 27999999999999999999999988 99999 9999999999999999999999998832 2233347
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccccccc-ccCCCceeecCCCChhhhHHH
Q 044085 236 LLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSM-VTTPSAAYSLENLLRDDCLSI 314 (1151)
Q Consensus 236 ~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-~~~~~~~~~l~~L~~~~~~~l 314 (1151)
..+..|.+.|++|||+|||||||+. .+|+.+..++|....||||++|||++.||.. +++.. .+++++|+++|||+|
T Consensus 249 ~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~-~~~v~~L~~~eaW~L 325 (889)
T KOG4658|consen 249 ELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY-PIEVECLTPEEAWDL 325 (889)
T ss_pred HHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc-cccccccCccccHHH
Confidence 8899999999999999999999986 5799999999999899999999999999998 66644 999999999999999
Q ss_pred HHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcccC----CCChhhHHHHHHHh
Q 044085 315 FVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLNSKIWDL----DEDKSGIMRALRVS 390 (1151)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~~~~~~~----~~~~~~i~~~l~~s 390 (1151)
|++.||.... ..++.++++|++|+++|+|+|||++++|+.|+.|.+.++|+++.+...+.. ++..+.++++|.+|
T Consensus 326 F~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklS 404 (889)
T KOG4658|consen 326 FQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLS 404 (889)
T ss_pred HHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhcc
Confidence 9999987644 455668999999999999999999999999999999999999998776552 23357899999999
Q ss_pred hcCCChhHHHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCcccccccC--CCceeehh
Q 044085 391 YYYLPSHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRSKI--DASWFLMH 468 (1151)
Q Consensus 391 y~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~--~~~~~~~H 468 (1151)
|+.||+++|.||+|||+||+||.|+++.|+.+|||||||.+..++.++++.|+.|+++||+++|++.... ...+|+||
T Consensus 405 yd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmH 484 (889)
T KOG4658|consen 405 YDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMH 484 (889)
T ss_pred HhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEee
Confidence 9999988999999999999999999999999999999999877789999999999999999999998752 45889999
Q ss_pred HHHHHHHhhhcC-----ceeeeeccc--cccCCCCCCCCceeeEEEEecccCcccccccccCCCCccEEEccCCCCcccc
Q 044085 469 DLIHDLASWSSG-----EICSSTEIT--WDRHNQGRFSRNLRHLSYLCSRFDGIKRFEGLHEVEYLRTLLALPVSTRKQS 541 (1151)
Q Consensus 469 ~lv~~~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~ 541 (1151)
|+|||||.|+++ ++..++... .........+..+|+++++++.... ...-...++|+||.+..+..
T Consensus 485 DvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~---- 557 (889)
T KOG4658|consen 485 DVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSD---- 557 (889)
T ss_pred HHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccCCCCCCccceEEEeecch----
Confidence 999999999999 444333321 0001111233568999988764422 33445667899999987642
Q ss_pred cchhhhhhhhcCCCCcccEEEecCcc-ccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEecccccccccccc
Q 044085 542 FVTKNLVFHVIPRLRRLRVLSLCGYW-ILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFP 620 (1151)
Q Consensus 542 ~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 620 (1151)
........+|..++.|+||||++|. +..+|+.|++|.|||||+|+++.|+.+|.++.+|..|.+|++..+..+..+|.
T Consensus 558 -~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 558 -WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred -hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc
Confidence 1245566779999999999999885 88999999999999999999999999999999999999999999977777777
Q ss_pred ccccCCccCeeecCCCCccccCcccccCccCCCccCeeEe
Q 044085 621 DIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 621 ~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 660 (1151)
.+..|++||+|.+.... .......++.+.+|++|.....
T Consensus 637 i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhhcccccEEEeeccc-cccchhhHHhhhcccchhhhee
Confidence 67779999999997654 1111223444455555544433
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.9e-64 Score=640.59 Aligned_cols=703 Identities=22% Similarity=0.333 Sum_probs=475.7
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEe---CCC-----
Q 044085 140 DEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYV---SED----- 211 (1151)
Q Consensus 140 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~v---s~~----- 211 (1151)
+.+.+|||++.++++..+|.... .++++|+|+||||+||||||+++|+ ++..+| +..+|+.- +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F-~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQF-QSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcC-CeEEEeeccccccchhhcc
Confidence 34679999999999999986543 4689999999999999999999999 667889 77777642 111
Q ss_pred ------CC-HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEe
Q 044085 212 ------FD-AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVT 284 (1151)
Q Consensus 212 ------~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivT 284 (1151)
++ ...+++.++.++....... .. ....+++.+++||+||||||||+ ...|+.+.....+.++||+||||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~-~~-~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIK-IY-HLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcc-cC-CHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEE
Confidence 11 1234455555554221111 10 11457788999999999999986 47899988777777789999999
Q ss_pred cCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHH
Q 044085 285 TRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKD 364 (1151)
Q Consensus 285 tr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~ 364 (1151)
||+..++..++... +|+++.+++++||+||+++||+... ..+++.+++++|+++|+|+|||++++|+.|+++ +.++
T Consensus 331 Trd~~vl~~~~~~~-~~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~ 406 (1153)
T PLN03210 331 TKDKHFLRAHGIDH-IYEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKED 406 (1153)
T ss_pred eCcHHHHHhcCCCe-EEEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHH
Confidence 99999987765555 9999999999999999999997643 345688999999999999999999999999987 7899
Q ss_pred HHHHHhhhcccCCCChhhHHHHHHHhhcCCChh-HHHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCCccHHHHHH
Q 044085 365 WEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSH-VKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEMEELGR 443 (1151)
Q Consensus 365 w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~-~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 443 (1151)
|+.++.+..... ...|.++|++||+.|+++ .|.||+++|+|+.++.+ ..+..|+|.+.... +
T Consensus 407 W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~ 469 (1153)
T PLN03210 407 WMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------N 469 (1153)
T ss_pred HHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------h
Confidence 999998865533 356999999999999875 99999999999998755 35778888765432 2
Q ss_pred HHHHHHHhCcccccccCCCceeehhHHHHHHHhhhcCceeeeeccc---cccC------CCCCCCCceeeEEEEecccCc
Q 044085 444 KSFQVLHSRSFFQRSKIDASWFLMHDLIHDLASWSSGEICSSTEIT---WDRH------NQGRFSRNLRHLSYLCSRFDG 514 (1151)
Q Consensus 444 ~~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~a~~~~~~~~~~~~~~---~~~~------~~~~~~~~~r~l~~~~~~~~~ 514 (1151)
..++.|+++||++.. ..++.|||++|+||+.++.++....... |... ......+.++++++.....
T Consensus 470 ~~l~~L~~ksLi~~~---~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~-- 544 (1153)
T PLN03210 470 IGLKNLVDKSLIHVR---EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEI-- 544 (1153)
T ss_pred hChHHHHhcCCEEEc---CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcc--
Confidence 238899999999875 3579999999999999986653110000 0000 0001112333333321100
Q ss_pred ccccccccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccc-------cccCccccCCC-cccEEEc
Q 044085 515 IKRFEGLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWI-------LQLPNDIGELK-HLRYLEF 586 (1151)
Q Consensus 515 ~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i-------~~lp~~i~~l~-~Lr~L~L 586 (1151)
+. ..+...+|..|++|+.|.+..+.. ..+|..+..++ +||+|.+
T Consensus 545 -------------~~---------------~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~ 596 (1153)
T PLN03210 545 -------------DE---------------LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRW 596 (1153)
T ss_pred -------------ce---------------eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEe
Confidence 00 112345677788888888765421 24566666654 5888888
Q ss_pred ccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCCccCeeEeccCCCC
Q 044085 587 SRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCS 666 (1151)
Q Consensus 587 s~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~ 666 (1151)
.++.++.+|..+ .+.+|+.|++.+| .+..+|.++..+++|+.|+++++.....+|. ++.+++|++|+
T Consensus 597 ~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~---------- 663 (1153)
T PLN03210 597 DKYPLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK---------- 663 (1153)
T ss_pred cCCCCCCCCCcC-CccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE----------
Confidence 888888888877 4678888888887 6777888788888888888877653444431 22222222221
Q ss_pred CcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEE
Q 044085 667 GLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELK 746 (1151)
Q Consensus 667 ~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~ 746 (1151)
T Consensus 664 -------------------------------------------------------------------------------- 663 (1153)
T PLN03210 664 -------------------------------------------------------------------------------- 663 (1153)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred Eeec-CCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeec
Q 044085 747 VQGY-GGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCF 825 (1151)
Q Consensus 747 l~~~-~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 825 (1151)
+.++ ....+|..+. .+++|+.|++++|.....+|....+++|+.|.+++|..+..++
T Consensus 664 L~~c~~L~~lp~si~--~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p-------------------- 721 (1153)
T PLN03210 664 LSDCSSLVELPSSIQ--YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP-------------------- 721 (1153)
T ss_pred ecCCCCccccchhhh--ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc--------------------
Confidence 1111 0112232222 2445555555555444444432244444444444443211110
Q ss_pred cccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCcceEEEcCC
Q 044085 826 EDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPLCELAIDGF 905 (1151)
Q Consensus 826 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 905 (1151)
. ..++|+.|++++ +.+. .+|..+
T Consensus 722 -----------------~------~~~nL~~L~L~~-n~i~-~lP~~~-------------------------------- 744 (1153)
T PLN03210 722 -----------------D------ISTNISWLDLDE-TAIE-EFPSNL-------------------------------- 744 (1153)
T ss_pred -----------------c------ccCCcCeeecCC-Cccc-cccccc--------------------------------
Confidence 0 123455555555 3343 333211
Q ss_pred CCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCcc-------cccc--CCCCCCCccEEEEcCCCCc
Q 044085 906 WEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRL-------VSFA--EGGLPSNLCSLTLFGCRYL 976 (1151)
Q Consensus 906 ~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l-------~~~~--~~~~~~~L~~L~L~~n~~~ 976 (1151)
.+++|++|.+.++.. ..++ ....+++|+.|+|++|...
T Consensus 745 ---------------------------------~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 745 ---------------------------------RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred ---------------------------------cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 122233333322111 1111 1123469999999999999
Q ss_pred ccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC-ccccccccCCCCCCCcceEEeccCCCCcccccC
Q 044085 977 TALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN-ICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK 1055 (1151)
Q Consensus 977 ~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 1055 (1151)
..+|..++++++|+.|++++|..++.+|..+ .+++|+.|++++|. +...+. ..++|+.|++++|.. ..+|.
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n~i--~~iP~ 863 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRTGI--EEVPW 863 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc-----cccccCEeECCCCCC--ccChH
Confidence 9899999999999999999999888898875 78999999999997 544332 246899999998533 23332
Q ss_pred ---CCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCCCCcCCCCCCC--------------CCcceEeeccCchH
Q 044085 1056 ---LPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECPNLISLPKNGLP--------------PSLVYVDIYSCPYL 1117 (1151)
Q Consensus 1056 ---~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~--------------~sL~~L~i~~c~~L 1117 (1151)
..++|+.|++.+|++++.++ ....+++|+.|++++|+++..++....+ ++...+.+.+|.++
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L 943 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL 943 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCC
Confidence 23589999999999999998 6778899999999999998876543322 23345577888887
Q ss_pred HHh
Q 044085 1118 EER 1120 (1151)
Q Consensus 1118 ~~~ 1120 (1151)
...
T Consensus 944 ~~~ 946 (1153)
T PLN03210 944 DQE 946 (1153)
T ss_pred Cch
Confidence 644
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.3e-43 Score=383.71 Aligned_cols=278 Identities=35% Similarity=0.601 Sum_probs=226.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 147 REKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+| +.++|+.++...+...+++.|+.++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-DGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-TEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccccc-cccccccccccccccccccccccccc
Confidence 7899999999998854 378999999999999999999999987788999 99999999999999999999999998
Q ss_pred CC---C-CCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcccccccccCCCceee
Q 044085 227 GS---V-DVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSMVTTPSAAYS 302 (1151)
Q Consensus 227 ~~---~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~ 302 (1151)
.. . ...+.+.....+++.|+++++||||||||+. ..|+.+...++....|++||||||+..++..+......++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 33 1 4567788999999999999999999999874 6898988888877789999999999999887765334899
Q ss_pred cCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcccCCC---C
Q 044085 303 LENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLNSKIWDLDE---D 379 (1151)
Q Consensus 303 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~---~ 379 (1151)
+++|+++||++||.+.++... ....+.+.+.+++|+++|+|+||||+++|++|+.+.+..+|.+++++..+...+ .
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997654 122344557899999999999999999999997665778999999776554432 3
Q ss_pred hhhHHHHHHHhhcCCChhHHHHHhhhccCCCCcccChHHHHHHHHHcCCcccC
Q 044085 380 KSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHK 432 (1151)
Q Consensus 380 ~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 432 (1151)
...+..++.+||+.||++.|+||+|||+||+++.|+++.++++|+|||||...
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 47799999999999999999999999999999999999999999999999763
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7e-36 Score=385.61 Aligned_cols=521 Identities=17% Similarity=0.210 Sum_probs=280.9
Q ss_pred ceeeEEEEecccCcccccccccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccc-ccCccccCCC
Q 044085 501 NLRHLSYLCSRFDGIKRFEGLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWIL-QLPNDIGELK 579 (1151)
Q Consensus 501 ~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~ 579 (1151)
.++.+.+..+..... ....+..+++|++|.+.++. ....++...+..+++|++|+|++|.++ .+|. +.++
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQ------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCc------cCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 466666654332211 12335578889998887653 222345556678899999999999876 3453 4688
Q ss_pred cccEEEccccccc-ccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCCccCee
Q 044085 580 HLRYLEFSRTAIE-VLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKF 658 (1151)
Q Consensus 580 ~Lr~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~ 658 (1151)
+|++|+|++|.++ .+|..++.+++|++|++++|.....+|..+.++++|++|++++|.+.+.+|..++++++|++|++.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 9999999999987 678889999999999999986667888889999999999999998877888889999999988776
Q ss_pred EeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCC
Q 044085 659 AVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKP 738 (1151)
Q Consensus 659 ~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 738 (1151)
.+..... .+..+.++++|+.|+++.|.... .....+..
T Consensus 221 ~n~l~~~------------------------------~p~~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~ 258 (968)
T PLN00113 221 YNNLSGE------------------------------IPYEIGGLTSLNHLDLVYNNLTG------------PIPSSLGN 258 (968)
T ss_pred CCccCCc------------------------------CChhHhcCCCCCEEECcCceecc------------ccChhHhC
Confidence 6543211 00112333444444444443211 11122333
Q ss_pred CCCcceEEEeecCCC-CCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCC
Q 044085 739 HYGLKELKVQGYGGA-KLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEP 816 (1151)
Q Consensus 739 ~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 816 (1151)
+++|+.|++++|... .+|.++.. +++|+.|++++|.+...+| .+..+++|+.|++++|.....++..+..
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------ 330 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFS--LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS------ 330 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhh--ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc------
Confidence 444555555444332 23433332 4455555555555444444 3444555555555554433333322211
Q ss_pred CCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCC---CCCCccEEEEccccCccc---c
Q 044085 817 FPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQ---RFSSLERVVIRSCEQLLV---S 890 (1151)
Q Consensus 817 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~~~~l~~---~ 890 (1151)
+++|+.|++.+ +.+.+..|..+..+++|+.|++++ +++++.+|. .+++|+.|++.++..... .
T Consensus 331 l~~L~~L~L~~----------n~l~~~~p~~l~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~ 399 (968)
T PLN00113 331 LPRLQVLQLWS----------NKFSGEIPKNLGKHNNLTVLDLST-NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS 399 (968)
T ss_pred CCCCCEEECcC----------CCCcCcCChHHhCCCCCcEEECCC-CeeEeeCChhHhCcCCCCEEECcCCEecccCCHH
Confidence 44555554442 222223333444455555555555 344433442 223444444444432211 1
Q ss_pred CCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCC--CCCccEE
Q 044085 891 YTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGL--PSNLCSL 968 (1151)
Q Consensus 891 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~--~~~L~~L 968 (1151)
...+++|+.|.+.+|... +.+|..+.++++|+.|++++|.++......+ .++|+.|
T Consensus 400 ~~~~~~L~~L~L~~n~l~----------------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 400 LGACRSLRRVRLQDNSFS----------------------GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred HhCCCCCCEEECcCCEee----------------------eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 223445555555444211 1233444455555555555555543322211 1355555
Q ss_pred EEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCC
Q 044085 969 TLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLE 1048 (1151)
Q Consensus 969 ~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~ 1048 (1151)
++++|.+.+.+|..+ ..++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+..+. .+.++++|+.|+|++|..
T Consensus 458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l 535 (968)
T PLN00113 458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQL 535 (968)
T ss_pred ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh-HHcCccCCCEEECCCCcc
Confidence 555555555444433 234555555555555555555555555555555555554433332 244555555555555322
Q ss_pred Cc---ccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCCCCcCCCCCCCCCcceEeeccCch
Q 044085 1049 DE---VSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECPNLISLPKNGLPPSLVYVDIYSCPY 1116 (1151)
Q Consensus 1049 ~~---~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~ 1116 (1151)
.. ..+..+ ++|+.|++++|.-...+| .+.++++|+.|++++|+....+|..+...++....+.++|.
T Consensus 536 ~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 536 SGQIPASFSEM-PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606 (968)
T ss_pred cccCChhHhCc-ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCcc
Confidence 11 111111 345555555554444555 56677778888888876666677654444444444455443
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.3e-35 Score=377.43 Aligned_cols=497 Identities=17% Similarity=0.195 Sum_probs=384.8
Q ss_pred CccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccc-ccCccc-cCCCcccEEEccccccc-ccchhhhcCC
Q 044085 526 YLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWIL-QLPNDI-GELKHLRYLEFSRTAIE-VLPESVSTLY 602 (1151)
Q Consensus 526 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i-~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~ 602 (1151)
++++|.+.+... ....+..|..+++|++|+|++|.+. .+|..+ .++.+|++|+|++|.++ .+|. +.++
T Consensus 70 ~v~~L~L~~~~i-------~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 70 RVVSIDLSGKNI-------SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred cEEEEEecCCCc-------cccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 566666654321 2224556889999999999999986 788665 49999999999999987 4564 5689
Q ss_pred CCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEE
Q 044085 603 NLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLT 682 (1151)
Q Consensus 603 ~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~ 682 (1151)
+|++|++++|.....+|..++++++|++|++++|.+.+.+|..++++++|++|++..+....
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~------------------ 202 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG------------------ 202 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC------------------
Confidence 99999999996666889999999999999999999888899999999999999876553211
Q ss_pred EeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCC-CCCcccCC
Q 044085 683 ISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGA-KLPTWLGQ 761 (1151)
Q Consensus 683 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~ 761 (1151)
..+..+..+++|+.|++++|.... .....+..+++|+.|++++|... .+|..+..
T Consensus 203 ------------~~p~~l~~l~~L~~L~L~~n~l~~------------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 203 ------------QIPRELGQMKSLKWIYLGYNNLSG------------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred ------------cCChHHcCcCCccEEECcCCccCC------------cCChhHhcCCCCCEEECcCceeccccChhHhC
Confidence 011235567788999998876532 12234566789999999998765 56777764
Q ss_pred CCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCC
Q 044085 762 SSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGT 840 (1151)
Q Consensus 762 ~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 840 (1151)
+++|+.|++++|.+.+.+| .+..+++|+.|++++|.....++..+. .+++|+.|++. .+.+
T Consensus 259 --l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------~l~~L~~L~l~----------~n~~ 320 (968)
T PLN00113 259 --LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI------QLQNLEILHLF----------SNNF 320 (968)
T ss_pred --CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc------CCCCCcEEECC----------CCcc
Confidence 8899999999999887777 788999999999999875555554432 37889999887 4444
Q ss_pred CCCcccccccCCcccEEEeccCcCcccCCCC---CCCCccEEEEccccCccc---cCCCCCCcceEEEcCCCCccccCCC
Q 044085 841 AGGDQEAAKGFHSLRELSIINCSKLKGRLPQ---RFSSLERVVIRSCEQLLV---SYTALPPLCELAIDGFWEVAWIRPE 914 (1151)
Q Consensus 841 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~ 914 (1151)
.+..|..+..+++|+.|++++ +.+++.+|. .+++|+.|++.++..... ....+++|+.|++.++..
T Consensus 321 ~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l------- 392 (968)
T PLN00113 321 TGKIPVALTSLPRLQVLQLWS-NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL------- 392 (968)
T ss_pred CCcCChhHhcCCCCCEEECcC-CCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe-------
Confidence 555677788899999999999 567767774 467788888887764322 233456788888777642
Q ss_pred CCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCC--CCCccEEEEcCCCCcccCccccCCCCcccee
Q 044085 915 ESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGL--PSNLCSLTLFGCRYLTALPNGIYNLSSLQHL 992 (1151)
Q Consensus 915 ~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~--~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L 992 (1151)
.+.+|..+.++++|+.|++++|.++...+..+ .++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 393 ---------------~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 393 ---------------EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred ---------------cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 24567778899999999999999975433333 2699999999999999888888899999999
Q ss_pred eecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccC---CCCCcceEEecCCC
Q 044085 993 EIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK---LPNSLVKLNIREFP 1069 (1151)
Q Consensus 993 ~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~ 1069 (1151)
++++|.+.+.+|..+ ..++|+.|++++|.+++..+. .+.++++|+.|++++|... ..++. -..+|+.|++++|.
T Consensus 458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~ 534 (968)
T PLN00113 458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPR-KLGSLSELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQ 534 (968)
T ss_pred ECcCceeeeecCccc-ccccceEEECcCCccCCccCh-hhhhhhccCEEECcCCcce-eeCChHHcCccCCCEEECCCCc
Confidence 999999998888764 568999999999999876654 4789999999999996332 22222 23589999999976
Q ss_pred CCCcCC-CCCCCCCCCeeeEeCCCCCCcCCCC-CCCCCcceEeeccCchH
Q 044085 1070 GLESLS-FVRNLTSLERLTLCECPNLISLPKN-GLPPSLVYVDIYSCPYL 1117 (1151)
Q Consensus 1070 ~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~~L 1117 (1151)
-...+| .+..+++|+.|++++|.....+|.. ...++|+.|++++|+-.
T Consensus 535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 555666 7889999999999999766677764 34578999999999743
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.95 E-value=3.6e-29 Score=267.46 Aligned_cols=222 Identities=21% Similarity=0.229 Sum_probs=128.4
Q ss_pred cEEEecCccccccC-ccccCC--CcccEEEccccccccc-chhhhcCCCCcEEeccccccccccccccccCCccCeeecC
Q 044085 559 RVLSLCGYWILQLP-NDIGEL--KHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNS 634 (1151)
Q Consensus 559 r~L~L~~~~i~~lp-~~i~~l--~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 634 (1151)
+.||.+++.+..+. ..+.+. ..-+.||+++|.+..+ +..|.++++||.+++..| .+..+|.......+|++|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeee
Confidence 34555555554432 122111 1234466666666655 455666666666666666 666666655555556666666
Q ss_pred CCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEec
Q 044085 635 HSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWG 714 (1151)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 714 (1151)
+|.+...-...+.-++.|++|+++.+.+...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i------------------------------------------------- 164 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEI------------------------------------------------- 164 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcc-------------------------------------------------
Confidence 6664433333455555555554433321100
Q ss_pred CCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCccee
Q 044085 715 DKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNL 793 (1151)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 793 (1151)
....++.-.++++|++++|.++.+...-++ .+.+|..|.|+.|.+....+ .|..+|+|+.|
T Consensus 165 -----------------~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 165 -----------------PKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred -----------------cCCCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 001122234566666666666666554443 46788888888888854433 67778888888
Q ss_pred eccCccCceEe-CccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcc
Q 044085 794 VIKGMAKVKSV-GLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLK 866 (1151)
Q Consensus 794 ~L~~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 866 (1151)
+|..|.. +.+ +..|.| +++|+.|.+. .|++.......|.++.++++|++.. |++.
T Consensus 227 dLnrN~i-rive~ltFqg------L~Sl~nlklq----------rN~I~kL~DG~Fy~l~kme~l~L~~-N~l~ 282 (873)
T KOG4194|consen 227 DLNRNRI-RIVEGLTFQG------LPSLQNLKLQ----------RNDISKLDDGAFYGLEKMEHLNLET-NRLQ 282 (873)
T ss_pred hccccce-eeehhhhhcC------chhhhhhhhh----------hcCcccccCcceeeecccceeeccc-chhh
Confidence 8888763 333 444433 7777777665 4544444455677788888888888 6665
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=8.3e-28 Score=257.15 Aligned_cols=223 Identities=20% Similarity=0.230 Sum_probs=147.2
Q ss_pred CcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCC-CCCCCCCCCcceeeccCccCceEeCccccCCCCCCCCCC
Q 044085 741 GLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTS-LPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPS 819 (1151)
Q Consensus 741 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 819 (1151)
+|..|.++.|.++.+|...+. .+++|+.|+|..|.+... ...|.++++|+.|.|..|..-+--...|++ +.+
T Consensus 198 sL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~------l~k 270 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG------LEK 270 (873)
T ss_pred hheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceee------ecc
Confidence 455566666666777765553 477788888887777433 236777888888888877655555555655 677
Q ss_pred cceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCcce
Q 044085 820 LETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPLCE 899 (1151)
Q Consensus 820 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~ 899 (1151)
+++|+++ .|.+.......+.++.+|+.|++++ |.+.. +.
T Consensus 271 me~l~L~----------~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~r-ih----------------------------- 309 (873)
T KOG4194|consen 271 MEHLNLE----------TNRLQAVNEGWLFGLTSLEQLDLSY-NAIQR-IH----------------------------- 309 (873)
T ss_pred cceeecc----------cchhhhhhcccccccchhhhhccch-hhhhe-ee-----------------------------
Confidence 7777776 3434433344556788888888888 66552 11
Q ss_pred EEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcc
Q 044085 900 LAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLT 977 (1151)
Q Consensus 900 L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~ 977 (1151)
+.++..+++|+.|+|++|+|+.++++.|. ..|++|.|++|.+..
T Consensus 310 ----------------------------------~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 310 ----------------------------------IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred ----------------------------------cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 12344567777777777777777766554 577777777777665
Q ss_pred cCccccCCCCccceeeecCCCCCccCCC---CCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 978 ALPNGIYNLSSLQHLEIRACPRIASIPE---EVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 978 ~l~~~l~~l~~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
.--..|..+++|++|+|++|.+...+.+ .|..+++|+.|++.||++..++.. +|.++.+|++|+|.+|
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr-Afsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR-AFSGLEALEHLDLGDN 426 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh-hhccCcccceecCCCC
Confidence 4445567777777777777777655432 355677777777777777766544 4777777777777774
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=1.3e-29 Score=259.31 Aligned_cols=338 Identities=18% Similarity=0.169 Sum_probs=225.1
Q ss_pred CCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCccccCCCCCCCCC
Q 044085 739 HYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFP 818 (1151)
Q Consensus 739 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 818 (1151)
+..|++|+...|....+|+.++. +.+|..|+|..|++ ..+|.|+.+..|++|++..|. ++.++.+.+. .++
T Consensus 182 m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~Nki-~~lPef~gcs~L~Elh~g~N~-i~~lpae~~~-----~L~ 252 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRNKI-RFLPEFPGCSLLKELHVGENQ-IEMLPAEHLK-----HLN 252 (565)
T ss_pred HHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhccc-ccCCCCCccHHHHHHHhcccH-HHhhHHHHhc-----ccc
Confidence 34566666666677778887774 77888888888887 566788888888888887764 5555555442 277
Q ss_pred CcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCc--cEEEEccccCccc-----cC
Q 044085 819 SLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSL--ERVVIRSCEQLLV-----SY 891 (1151)
Q Consensus 819 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L--~~L~l~~~~~l~~-----~~ 891 (1151)
+|..|++.+ |.+. ..|..+.-+.+|+.||+++ |.++ .+|..+.++ +.|.+.++|.-.+ +.
T Consensus 253 ~l~vLDLRd----------Nklk-e~Pde~clLrsL~rLDlSN-N~is-~Lp~sLgnlhL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 253 SLLVLDLRD----------NKLK-EVPDEICLLRSLERLDLSN-NDIS-SLPYSLGNLHLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred cceeeeccc----------cccc-cCchHHHHhhhhhhhcccC-Cccc-cCCcccccceeeehhhcCCchHHHHHHHHcc
Confidence 777777763 3222 4466666788888888888 7888 677655554 4444555543211 00
Q ss_pred CCCCCcceEEE-cCCCCccccCCCCCcccccCcccCCCC-CCCCccccCCCCCccEEEEeCCccccccCCCCC----CCc
Q 044085 892 TALPPLCELAI-DGFWEVAWIRPEESRAEVLPWEISIPD-QESLPDGLHKLSHITTISMYGSRLVSFAEGGLP----SNL 965 (1151)
Q Consensus 892 ~~~~~L~~L~l-~~~~~l~~~~~~~~~l~~~~~~~~~~~-~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~----~~L 965 (1151)
..-.-|++|.= ..|.++..-..+ . + +..+ ..........+-+.+.|+++.-+++.+|...|- .-.
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~--~-e------~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~V 390 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGG--T-E------TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIV 390 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCccc--c-c------ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcce
Confidence 00001111100 001111000000 0 0 0000 000011123456789999999999999887765 236
Q ss_pred cEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 966 CSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 966 ~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
...+++.|.+.. +|..+..+..+.+.-+..|+..+.+|..+..+++|..|++++|.+.+++.+ +..+..|+.|+|+.
T Consensus 391 t~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e--~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 391 TSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE--MGSLVRLQTLNLSF 467 (565)
T ss_pred EEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh--hhhhhhhheecccc
Confidence 788999998766 788888888887766666667778888888999999999999999988864 66788899999998
Q ss_pred CCCCcccccCCCC------CcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCcCCCC-CCCCCcceEeeccCch
Q 044085 1046 GLEDEVSFQKLPN------SLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLISLPKN-GLPPSLVYVDIYSCPY 1116 (1151)
Q Consensus 1046 ~~~~~~~~~~~~~------~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~~ 1116 (1151)
| .|..+|. .++.+-.+ -+.+..++ ++.++.+|.+|++.+| .+..+|.. |.+++|++|.++|+|-
T Consensus 468 N-----rFr~lP~~~y~lq~lEtllas-~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 468 N-----RFRMLPECLYELQTLETLLAS-NNQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred c-----ccccchHHHhhHHHHHHHHhc-cccccccChHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCcc
Confidence 4 4555442 33333333 36777777 6889999999999998 78888876 8899999999999975
Q ss_pred H
Q 044085 1117 L 1117 (1151)
Q Consensus 1117 L 1117 (1151)
-
T Consensus 541 r 541 (565)
T KOG0472|consen 541 R 541 (565)
T ss_pred C
Confidence 3
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=3.9e-27 Score=253.14 Aligned_cols=370 Identities=21% Similarity=0.284 Sum_probs=259.6
Q ss_pred CCCcccEEEecCcccc--ccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCee
Q 044085 554 RLRRLRVLSLCGYWIL--QLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHL 631 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 631 (1151)
-++..|-.|+++|.++ .+|+++..+..++.|.|..+.+..+|..++.|.+|++|.+.+| .+..+...++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 3566777888888765 6788888888999999988888899999999999999999888 666666778888888888
Q ss_pred ecCCCCc-cccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceE
Q 044085 632 KNSHSNL-FEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALS 710 (1151)
Q Consensus 632 ~l~~~~~-~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 710 (1151)
.+..|++ ...+|..+-.|..|.+|+++.+...
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~----------------------------------------------- 116 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR----------------------------------------------- 116 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecchhhhh-----------------------------------------------
Confidence 8888774 2346777777777777765544321
Q ss_pred EEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCc
Q 044085 711 LKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSL 790 (1151)
Q Consensus 711 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L 790 (1151)
.+...+..-+++-.|++++|++..+|..++- .+..|-.|+|++|.+....|.+..+.+|
T Consensus 117 --------------------EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 117 --------------------EVPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSML 175 (1255)
T ss_pred --------------------hcchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhh
Confidence 1222233344666778888888888887653 5777888999999985555578889999
Q ss_pred ceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCC
Q 044085 791 KNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLP 870 (1151)
Q Consensus 791 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p 870 (1151)
+.|.|++|+.....- ..+| +|.+|+.|.+++-+.--..+|
T Consensus 176 qtL~Ls~NPL~hfQL---------rQLP-------------------------------smtsL~vLhms~TqRTl~N~P 215 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQL---------RQLP-------------------------------SMTSLSVLHMSNTQRTLDNIP 215 (1255)
T ss_pred hhhhcCCChhhHHHH---------hcCc-------------------------------cchhhhhhhcccccchhhcCC
Confidence 999999986321100 0011 345555555555322222344
Q ss_pred CCCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeC
Q 044085 871 QRFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYG 950 (1151)
Q Consensus 871 ~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~ 950 (1151)
..+..| .+|+.++++ .+++..+|+.+.++.+|+.|+||+
T Consensus 216 tsld~l------------------~NL~dvDlS-----------------------~N~Lp~vPecly~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 216 TSLDDL------------------HNLRDVDLS-----------------------ENNLPIVPECLYKLRNLRRLNLSG 254 (1255)
T ss_pred Cchhhh------------------hhhhhcccc-----------------------ccCCCcchHHHhhhhhhheeccCc
Confidence 322222 112222221 223456677778888999999999
Q ss_pred CccccccCCC-CCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCc-cCCCCCCCCCCccEEEecCCCcccccc
Q 044085 951 SRLVSFAEGG-LPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIA-SIPEEVGFPPNITELHIEGPNICKLFF 1028 (1151)
Q Consensus 951 n~l~~~~~~~-~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 1028 (1151)
|.|+.+.... .-.+|++|+++.|.++ .+|.++..|+.|+.|++.+|++.- -+|+.++.+.+|+.+..++|.+.-++.
T Consensus 255 N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPE 333 (1255)
T KOG0444|consen 255 NKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPE 333 (1255)
T ss_pred CceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCch
Confidence 9988765431 1258899999999864 488889999999999998887753 478888999999999999998775554
Q ss_pred ccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCCCCcCCC
Q 044085 1029 DLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECPNLISLPK 1099 (1151)
Q Consensus 1029 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~ 1099 (1151)
++..|..|+.|.+++ +.|..+| .++-|+.|+.|++.+||++..-|.
T Consensus 334 --glcRC~kL~kL~L~~-----------------------NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 334 --GLCRCVKLQKLKLDH-----------------------NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred --hhhhhHHHHHhcccc-----------------------cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 577888888888876 4555566 566677788888888877765443
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-26 Score=260.47 Aligned_cols=108 Identities=36% Similarity=0.447 Sum_probs=97.2
Q ss_pred hcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCe
Q 044085 551 VIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRH 630 (1151)
Q Consensus 551 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~ 630 (1151)
++.+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|..+|.++.++.+|++|.|.+| .+..+|.++..+.+|++
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQY 118 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccc
Confidence 34444459999999999999999999999999999999999999999999999999999988 89999999999999999
Q ss_pred eecCCCCccccCcccccCccCCCccCeeEe
Q 044085 631 LKNSHSNLFEEMPLRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 631 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 660 (1151)
|+++.|. .+.+|..+..++.+..+...++
T Consensus 119 LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 119 LDLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred cccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 9999999 6788988888888887766555
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=2.4e-27 Score=242.80 Aligned_cols=427 Identities=22% Similarity=0.234 Sum_probs=240.3
Q ss_pred hhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCc
Q 044085 548 VFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTN 627 (1151)
Q Consensus 548 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~ 627 (1151)
++..+.....|+.|+.++|.+.++|++|+.+..|..|+..+|+|+.+|.++..+.+|..|++.+| .++.+|+..-+++.
T Consensus 106 lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~ 184 (565)
T KOG0472|consen 106 LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKR 184 (565)
T ss_pred ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHH
Confidence 33444555556666666666666666666666666666666666666666666666666666665 55555555445666
Q ss_pred cCeeecCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcC
Q 044085 628 LRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLE 707 (1151)
Q Consensus 628 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~ 707 (1151)
|+|||...|- .+.+|..++.|.+|.-|++..+...... .+.+|..|.
T Consensus 185 L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~lP--------------------------------ef~gcs~L~ 231 (565)
T KOG0472|consen 185 LKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRFLP--------------------------------EFPGCSLLK 231 (565)
T ss_pred HHhcccchhh-hhcCChhhcchhhhHHHHhhhcccccCC--------------------------------CCCccHHHH
Confidence 6666665555 4556666666666655555444322211 234444555
Q ss_pred ceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCC
Q 044085 708 ALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHL 787 (1151)
Q Consensus 708 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l 787 (1151)
+|++..|.+ ..-.-+.+..++.+..|++..|+...+|..+.. +.+|.+|++++|.+..-.+.+|++
T Consensus 232 Elh~g~N~i------------~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~sLgnl 297 (565)
T KOG0472|consen 232 ELHVGENQI------------EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPYSLGNL 297 (565)
T ss_pred HHHhcccHH------------HhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCcccccc
Confidence 555544432 112234455678889999999999999998864 789999999999996666699999
Q ss_pred CCcceeeccCccCceEeCccccCCCCCCCCCCcceee-ccccchhhhhhcccCC--CCCcccccccCCcccEEEeccCcC
Q 044085 788 PSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLC-FEDMQELEEWISHAGT--AGGDQEAAKGFHSLRELSIINCSK 864 (1151)
Q Consensus 788 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~-l~~~~~l~~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~c~~ 864 (1151)
.|+.|.+.+|+. +.+..+...+.....+..|+.-. -.+...-+.-. .... ....-.....+.+.+.|+++. -+
T Consensus 298 -hL~~L~leGNPl-rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~-e~~~t~~~~~~~~~~~~i~tkiL~~s~-~q 373 (565)
T KOG0472|consen 298 -HLKFLALEGNPL-RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGT-ETAMTLPSESFPDIYAIITTKILDVSD-KQ 373 (565)
T ss_pred -eeeehhhcCCch-HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccc-cccCCCCCCcccchhhhhhhhhhcccc-cc
Confidence 999999999973 22221111111111111111100 00000000000 0000 000001122344566666666 45
Q ss_pred cccCCCC-CCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCc
Q 044085 865 LKGRLPQ-RFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHI 943 (1151)
Q Consensus 865 L~~~~p~-~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L 943 (1151)
++ .+|. .|..-+ -.-.....+++ +.+..+|..+..+..+
T Consensus 374 lt-~VPdEVfea~~----------------~~~Vt~Vnfsk-----------------------NqL~elPk~L~~lkel 413 (565)
T KOG0472|consen 374 LT-LVPDEVFEAAK----------------SEIVTSVNFSK-----------------------NQLCELPKRLVELKEL 413 (565)
T ss_pred cc-cCCHHHHHHhh----------------hcceEEEeccc-----------------------chHhhhhhhhHHHHHH
Confidence 65 4552 111110 00011111111 1133445555555444
Q ss_pred cEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCC
Q 044085 944 TTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGP 1021 (1151)
Q Consensus 944 ~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n 1021 (1151)
.+.-+..|+..++++..+. ++|..|++++|.+. .+|..++.+..|++|+++.|.+. .+|..+..+..|+.+-.++|
T Consensus 414 vT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~n 491 (565)
T KOG0472|consen 414 VTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNN 491 (565)
T ss_pred HHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccc
Confidence 4443333333333333221 57777777776654 36777777777888888887654 56766666677777777777
Q ss_pred CccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCC
Q 044085 1022 NICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECP 1092 (1151)
Q Consensus 1022 ~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~ 1092 (1151)
++..+.+. ++.++.+|..|++.+ +.+..+| .++++++|++|.|.+||
T Consensus 492 qi~~vd~~-~l~nm~nL~tLDL~n-----------------------Ndlq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 492 QIGSVDPS-GLKNMRNLTTLDLQN-----------------------NDLQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred cccccChH-HhhhhhhcceeccCC-----------------------CchhhCChhhccccceeEEEecCCc
Confidence 77776655 477777777777776 5666676 78888999999999885
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=3.9e-22 Score=256.63 Aligned_cols=218 Identities=20% Similarity=0.180 Sum_probs=141.1
Q ss_pred HHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCcccccccCCCceeehhHHHHHHHhhhcCceeeeeccccccCCCCCC
Q 044085 419 IVLLWMAEGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRSKIDASWFLMHDLIHDLASWSSGEICSSTEITWDRHNQGRF 498 (1151)
Q Consensus 419 li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~a~~~~~~~~~~~~~~~~~~~~~~~ 498 (1151)
.+...+...+|+...+...|.+..+.+-.+.+..--.++. ...+.+.+.=+.++.....+.+. +.....+
T Consensus 471 ~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~--~r~~l~~~~di~~vl~~~~g~~~-v~~i~l~------- 540 (1153)
T PLN03210 471 GLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPG--EREFLVDAKDICDVLEDNTGTKK-VLGITLD------- 540 (1153)
T ss_pred ChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCC--cceeEeCHHHHHHHHHhCcccce-eeEEEec-------
Confidence 3666777788876555566777666666666544332332 23333333323343332222211 1111100
Q ss_pred CCceeeEEEEecccCcccccccccCCCCccEEEccCCCCcccccchhhhhhhhcCCC-CcccEEEecCccccccCccccC
Q 044085 499 SRNLRHLSYLCSRFDGIKRFEGLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRL-RRLRVLSLCGYWILQLPNDIGE 577 (1151)
Q Consensus 499 ~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~ 577 (1151)
...++.+.+.. ..+.++.+|+.|.+........... ...++..|..+ +.||.|++.++.+..+|..| .
T Consensus 541 ~~~~~~~~i~~---------~aF~~m~~L~~L~~~~~~~~~~~~~-~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~ 609 (1153)
T PLN03210 541 IDEIDELHIHE---------NAFKGMRNLLFLKFYTKKWDQKKEV-RWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-R 609 (1153)
T ss_pred cCccceeeecH---------HHHhcCccccEEEEecccccccccc-eeecCcchhhcCcccEEEEecCCCCCCCCCcC-C
Confidence 11222333322 1345678888887754321000000 11123334454 46999999999999999888 5
Q ss_pred CCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCCccCe
Q 044085 578 LKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAK 657 (1151)
Q Consensus 578 l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 657 (1151)
..+|++|+++++.+..+|..+..+++|++|+|++|..+..+|. +..+++|++|++++|.....+|..++++++|+.|++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 7899999999999999999999999999999999877888874 889999999999999878889988888888887764
Q ss_pred e
Q 044085 658 F 658 (1151)
Q Consensus 658 ~ 658 (1151)
.
T Consensus 689 ~ 689 (1153)
T PLN03210 689 S 689 (1153)
T ss_pred C
Confidence 3
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=8.8e-26 Score=242.80 Aligned_cols=365 Identities=20% Similarity=0.261 Sum_probs=254.1
Q ss_pred cCCCcccEEEccccccc--ccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCC
Q 044085 576 GELKHLRYLEFSRTAIE--VLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLR 653 (1151)
Q Consensus 576 ~~l~~Lr~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 653 (1151)
+-|+-.|-.|+++|.++ ..|.+...++.++-|.|..+ .+..+|..++.|.+|+||.+++|++ ..+-.+++.|+.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~L-~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQL-ISVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhhh-HhhhhhhccchhhH
Confidence 34566778899999988 77999999999999999887 8889999999999999999999883 33433344444444
Q ss_pred ccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHh
Q 044085 654 TLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVL 733 (1151)
Q Consensus 654 ~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 733 (1151)
.+....+ ..
T Consensus 82 sv~~R~N------------------------------------------------------~L----------------- 90 (1255)
T KOG0444|consen 82 SVIVRDN------------------------------------------------------NL----------------- 90 (1255)
T ss_pred HHhhhcc------------------------------------------------------cc-----------------
Confidence 4322111 11
Q ss_pred hccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCccccCCCC
Q 044085 734 EMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYC 813 (1151)
Q Consensus 734 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 813 (1151)
....+|..++. +..|+.|+|++|.+.+....+..-.++-.|+|++|. ++.||...+
T Consensus 91 -----------------KnsGiP~diF~--l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lf---- 146 (1255)
T KOG0444|consen 91 -----------------KNSGIPTDIFR--LKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLF---- 146 (1255)
T ss_pred -----------------ccCCCCchhcc--cccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHH----
Confidence 01235665553 677888888888875544467777778888887764 444443321
Q ss_pred CCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCC---CCCCccEEEEccccCcccc
Q 044085 814 SEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQ---RFSSLERVVIRSCEQLLVS 890 (1151)
Q Consensus 814 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~~~~l~~~ 890 (1151)
.++..|-.|++++ |+|. .+|+ .+..|++|.++++|.....
T Consensus 147 -----------------------------------inLtDLLfLDLS~-NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ 189 (1255)
T KOG0444|consen 147 -----------------------------------INLTDLLFLDLSN-NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ 189 (1255)
T ss_pred -----------------------------------HhhHhHhhhcccc-chhh-hcCHHHHHHhhhhhhhcCCChhhHHH
Confidence 1344555566666 5665 4542 3455666666666655554
Q ss_pred CCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCC-CCccEEE
Q 044085 891 YTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLP-SNLCSLT 969 (1151)
Q Consensus 891 ~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~L~~L~ 969 (1151)
...+|+++.|..-..++-. ..+..+|.++..+.+|..+++|.|++..+|...+. .+|+.|+
T Consensus 190 LrQLPsmtsL~vLhms~Tq------------------RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN 251 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQ------------------RTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN 251 (1255)
T ss_pred HhcCccchhhhhhhccccc------------------chhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence 4444444433332221110 11356778888899999999999999887776543 6889999
Q ss_pred EcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCC
Q 044085 970 LFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLED 1049 (1151)
Q Consensus 970 L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~ 1049 (1151)
|++|.++. +.-+.....+|++|++|.|+++ .+|..+..++.|+.|++.+|+++-...+.+++.+..|+.+...+
T Consensus 252 LS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan---- 325 (1255)
T KOG0444|consen 252 LSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN---- 325 (1255)
T ss_pred cCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc----
Confidence 99998765 4445666788999999998776 67888888899999999988854222223677788888887777
Q ss_pred cccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCCCCcCCCC-CCCCCcceEeeccCchHH
Q 044085 1050 EVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECPNLISLPKN-GLPPSLVYVDIYSCPYLE 1118 (1151)
Q Consensus 1050 ~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~~L~ 1118 (1151)
++|.-.| ++..|+.|+.|.|+.| .+..+|.. .+++-|+.|++..+|+|-
T Consensus 326 -------------------N~LElVPEglcRC~kL~kL~L~~N-rLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 326 -------------------NKLELVPEGLCRCVKLQKLKLDHN-RLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred -------------------cccccCchhhhhhHHHHHhccccc-ceeechhhhhhcCCcceeeccCCcCcc
Confidence 5666667 7888999999999988 67778875 678999999999999874
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=8.1e-26 Score=255.82 Aligned_cols=105 Identities=27% Similarity=0.294 Sum_probs=86.8
Q ss_pred CCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCC
Q 044085 524 VEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYN 603 (1151)
Q Consensus 524 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~ 603 (1151)
.-+|.+|.+..+.. ..++..+..+.+|+.|+++.|.|..+|.++.++.+|+||.|.+|.+..+|.++..+.+
T Consensus 44 ~v~L~~l~lsnn~~--------~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lkn 115 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQI--------SSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKN 115 (1081)
T ss_pred eeeeEEeecccccc--------ccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhc
Confidence 33466776665542 2234456778899999999999999999999999999999999999999999999999
Q ss_pred CcEEeccccccccccccccccCCccCeeecCCCC
Q 044085 604 LQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSN 637 (1151)
Q Consensus 604 L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~ 637 (1151)
|++|++++| .....|..+..++.+..+.+++|.
T Consensus 116 l~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 116 LQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNE 148 (1081)
T ss_pred ccccccchh-ccCCCchhHHhhhHHHHHhhhcch
Confidence 999999999 778888888888888888888873
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.70 E-value=5.1e-19 Score=182.18 Aligned_cols=116 Identities=22% Similarity=0.187 Sum_probs=72.4
Q ss_pred hhhhhhhcCCCCcccEEEecCcccccc-CccccCCCcccEEEccc-ccccccchh-hhcCCCCcEEeccccccccccccc
Q 044085 545 KNLVFHVIPRLRRLRVLSLCGYWILQL-PNDIGELKHLRYLEFSR-TAIEVLPES-VSTLYNLQTLILERCYRLKKLFPD 621 (1151)
Q Consensus 545 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~-n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~ 621 (1151)
..+++++|+.++.||.|||++|+|+.| |++|.+|..|-.|-+.+ |+|+.+|+. |.+|..||.|.+.-|.........
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 455666777777777777777777666 56666676666665554 667777665 667777777777666322333334
Q ss_pred cccCCccCeeecCCCCccccCcc-cccCccCCCccCeeEec
Q 044085 622 IGNLTNLRHLKNSHSNLFEEMPL-RIGKLTSLRTLAKFAVG 661 (1151)
Q Consensus 622 ~~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~ 661 (1151)
|..|++|..|.+.+|. ...++. .+..+.+++++.+..+.
T Consensus 160 l~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 6667777777776666 344544 36666666666555444
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=3.4e-16 Score=185.60 Aligned_cols=73 Identities=21% Similarity=0.158 Sum_probs=57.8
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCC
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSH 635 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~ 635 (1151)
..-.+|+|+++.++.+|..+. .+|+.|++++|.++.+|.. +++|++|++++| .+..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 456789999999999998775 4899999999999988853 578888888888 67777753 35777788777
Q ss_pred CC
Q 044085 636 SN 637 (1151)
Q Consensus 636 ~~ 637 (1151)
|.
T Consensus 272 N~ 273 (788)
T PRK15387 272 NP 273 (788)
T ss_pred Cc
Confidence 76
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.62 E-value=3.9e-15 Score=176.74 Aligned_cols=254 Identities=25% Similarity=0.306 Sum_probs=142.8
Q ss_pred cceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcc
Q 044085 742 LKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLE 821 (1151)
Q Consensus 742 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 821 (1151)
-..|+++++....+|..+. ++|+.|.+.+|.+. .+|. .+++|+.|++++|. ++.+|.. +++|+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~Lt-~LP~--lp~~Lk~LdLs~N~-LtsLP~l---------p~sL~ 265 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLT-SLPA--LPPELRTLEVSGNQ-LTSLPVL---------PPGLL 265 (788)
T ss_pred CcEEEcCCCCCCcCCcchh----cCCCEEEccCCcCC-CCCC--CCCCCcEEEecCCc-cCcccCc---------ccccc
Confidence 4456666666666776552 36777777777664 3443 24677777777763 3333311 45566
Q ss_pred eeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCcceEE
Q 044085 822 TLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPLCELA 901 (1151)
Q Consensus 822 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 901 (1151)
.|++.... +.. .|. .+++|+.|++++ |+++ .+|..+++|+.|+++++...
T Consensus 266 ~L~Ls~N~-L~~----------Lp~---lp~~L~~L~Ls~-N~Lt-~LP~~p~~L~~LdLS~N~L~-------------- 315 (788)
T PRK15387 266 ELSIFSNP-LTH----------LPA---LPSGLCKLWIFG-NQLT-SLPVLPPGLQELSVSDNQLA-------------- 315 (788)
T ss_pred eeeccCCc-hhh----------hhh---chhhcCEEECcC-Cccc-cccccccccceeECCCCccc--------------
Confidence 66554321 111 111 235677777777 5676 56655566666666554322
Q ss_pred EcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCcc
Q 044085 902 IDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPN 981 (1151)
Q Consensus 902 l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~ 981 (1151)
.+|.. ..+|+.|++++|.++.+|. +|.+|+.|+|++|.+.+ +|.
T Consensus 316 ------------------------------~Lp~l---p~~L~~L~Ls~N~L~~LP~--lp~~Lq~LdLS~N~Ls~-LP~ 359 (788)
T PRK15387 316 ------------------------------SLPAL---PSELCKLWAYNNQLTSLPT--LPSGLQELSVSDNQLAS-LPT 359 (788)
T ss_pred ------------------------------cCCCC---cccccccccccCccccccc--cccccceEecCCCccCC-CCC
Confidence 11111 1235555666666665553 44566666666666543 332
Q ss_pred ccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcc
Q 044085 982 GIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLV 1061 (1151)
Q Consensus 982 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~ 1061 (1151)
. .++|+.|++++|.+. .+|. .+++|+.|++++|.++.++.. .++|+.|++++| .+..+|.+|.+|+
T Consensus 360 l---p~~L~~L~Ls~N~L~-~LP~---l~~~L~~LdLs~N~Lt~LP~l-----~s~L~~LdLS~N--~LssIP~l~~~L~ 425 (788)
T PRK15387 360 L---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSLPVL-----PSELKELMVSGN--RLTSLPMLPSGLL 425 (788)
T ss_pred C---Ccccceehhhccccc-cCcc---cccccceEEecCCcccCCCCc-----ccCCCEEEccCC--cCCCCCcchhhhh
Confidence 2 235556666666554 3443 234566666666666654421 245666666663 2334555556666
Q ss_pred eEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCC
Q 044085 1062 KLNIREFPGLESLS-FVRNLTSLERLTLCECPN 1093 (1151)
Q Consensus 1062 ~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~ 1093 (1151)
.|++++ ++++.+| .+.++++|+.|+|++|+-
T Consensus 426 ~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 426 SLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhcc-CcccccChHHhhccCCCeEECCCCCC
Confidence 777766 5677787 677888999999998853
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=2e-17 Score=170.62 Aligned_cols=415 Identities=16% Similarity=0.135 Sum_probs=214.8
Q ss_pred ccEEEecCccccccC-ccccCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccccc-cccCCccCeeecC
Q 044085 558 LRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLKNS 634 (1151)
Q Consensus 558 Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~l~ 634 (1151)
-..++|..|.|+.+| .+|+.+++||.||||+|.|+.| |..|.+|..|-+|-+.++..++.+|++ |.+|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 467889999999998 7889999999999999999988 888999999999998886699999987 8999999999999
Q ss_pred CCCccccCcccccCccCCCccCeeEeccCCCC-----CcccccccccccCc-EEEeCccCCCCHhHHHHHhcCCCCCcCc
Q 044085 635 HSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCS-----GLRELRSLTLLQDK-LTISGLENVNDAEDAKEAQLNGKEKLEA 708 (1151)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~-----~l~~L~~L~~l~~~-l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 708 (1151)
-|.+.-.....+..|++|..|.++.+...... .+..++.+..-.|. ...-++....+........+++......
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p 228 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSP 228 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecch
Confidence 88854334455889999999998887655432 22233333322222 1111222222211111112222221111
Q ss_pred eEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCC
Q 044085 709 LSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHL 787 (1151)
Q Consensus 709 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l 787 (1151)
..+.+..+.. .........+...+ ..+.-..+.....|.--+ ..+++|++|+|++|++...-+ +|...
T Consensus 229 ~rl~~~Ri~q--------~~a~kf~c~~esl~--s~~~~~d~~d~~cP~~cf-~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 229 YRLYYKRINQ--------EDARKFLCSLESLP--SRLSSEDFPDSICPAKCF-KKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred HHHHHHHhcc--------cchhhhhhhHHhHH--HhhccccCcCCcChHHHH-hhcccceEeccCCCccchhhhhhhcch
Confidence 1111111100 00000000000000 000001111112222111 136666667777666655544 56666
Q ss_pred CCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCccc
Q 044085 788 PSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKG 867 (1151)
Q Consensus 788 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 867 (1151)
..++.|.|..|.. +.+.... +..+..|++|++. .|.++...|.+|..+.+|..|.+-.++..-+
T Consensus 298 a~l~eL~L~~N~l-~~v~~~~-----f~~ls~L~tL~L~----------~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 298 AELQELYLTRNKL-EFVSSGM-----FQGLSGLKTLSLY----------DNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred hhhhhhhcCcchH-HHHHHHh-----hhccccceeeeec----------CCeeEEEecccccccceeeeeehccCcccCc
Confidence 6666666666642 2221111 1114444444444 3333334444444445555555443221000
Q ss_pred ----CCCCCCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCc
Q 044085 868 ----RLPQRFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHI 943 (1151)
Q Consensus 868 ----~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L 943 (1151)
.+-+++..=. ..+ .........++.+.+++...-..-.. +..-.. ....+..-..++.+
T Consensus 362 C~l~wl~~Wlr~~~---~~~----~~~Cq~p~~~~~~~~~dv~~~~~~c~-~~ee~~---------~~~s~~cP~~c~c~ 424 (498)
T KOG4237|consen 362 CRLAWLGEWLRKKS---VVG----NPRCQSPGFVRQIPISDVAFGDFRCG-GPEELG---------CLTSSPCPPPCTCL 424 (498)
T ss_pred cchHHHHHHHhhCC---CCC----CCCCCCCchhccccchhccccccccC-CccccC---------CCCCCCCCCCcchh
Confidence 0000000000 000 00111122344444443321110000 000000 01111122345555
Q ss_pred cEEEE-eCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCC
Q 044085 944 TTISM-YGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGP 1021 (1151)
Q Consensus 944 ~~L~l-s~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n 1021 (1151)
.+..= |+..++.+ +..+|....+|++.+|.+.. +|.. .+.+| .+++++|++...-...|.+++.|.+|.|++|
T Consensus 425 ~tVvRcSnk~lk~l-p~~iP~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 425 DTVVRCSNKLLKLL-PRGIPVDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhHhhcccchhhc-CCCCCchhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 55433 33344444 34567788889999998765 5554 56778 8899999888766677788888999988875
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.56 E-value=1.1e-14 Score=174.54 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=62.5
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCC
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSH 635 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~ 635 (1151)
.+..+|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 456889999999999987764 579999999999999988764 58999999888 6777776553 4688888888
Q ss_pred CCccccCcc
Q 044085 636 SNLFEEMPL 644 (1151)
Q Consensus 636 ~~~~~~~p~ 644 (1151)
|.+ ..+|.
T Consensus 251 N~L-~~LP~ 258 (754)
T PRK15370 251 NRI-TELPE 258 (754)
T ss_pred Ccc-CcCCh
Confidence 773 34443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=7.8e-13 Score=158.71 Aligned_cols=52 Identities=21% Similarity=0.320 Sum_probs=34.7
Q ss_pred CcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCcc
Q 044085 741 GLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMA 799 (1151)
Q Consensus 741 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 799 (1151)
+...|++.++..+.+|..+. ++|+.|+|++|.+. .+| .+ .++|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip----~~L~~L~Ls~N~Lt-sLP~~l--~~nL~~L~Ls~N~ 231 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP----EQITTLILDNNELK-SLPENL--QGNIKTLYANSNQ 231 (754)
T ss_pred CceEEEeCCCCcCcCCcccc----cCCcEEEecCCCCC-cCChhh--ccCCCEEECCCCc
Confidence 45677777777777776552 46788888888765 344 22 2578888887764
No 21
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=1.1e-10 Score=150.84 Aligned_cols=292 Identities=16% Similarity=0.220 Sum_probs=179.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC-CCCHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE-DFDAVGITKV 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~-~~~~~~~~~~ 220 (1151)
..+|-|+. |.+.|... ...+++.|+|++|.||||++.+..+ .+ +.++|+++.. +-++..+...
T Consensus 14 ~~~~~R~r----l~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~------~~-~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 14 HNTVVRER----LLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAA------GK-NNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred cccCcchH----HHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHH------hC-CCeEEEecCcccCCHHHHHHH
Confidence 34555554 55555432 2567999999999999999999885 24 3689999964 4466667677
Q ss_pred HHHHhc--CCCC------------CcchHHHHHHHHHHhc--CCceEEEEeCCCCCChhhHHhhhcc-ccCCCCCcEEEE
Q 044085 221 ILQAAV--GSVD------------VNDLNLLQLQLENQLK--NKKFLLVLDDMWTENYDDWTNLCKP-FKAGLPGSKIIV 283 (1151)
Q Consensus 221 i~~~~~--~~~~------------~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~-l~~~~~gs~iiv 283 (1151)
++..+. .... ..+.......+-..+. +.+++|||||+..-+......+... +.....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 777764 1110 0122222333333332 6799999999954332333333333 333345678889
Q ss_pred ecCcccccc--cccCCCceeecC----CCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhc
Q 044085 284 TTRNEDVSS--MVTTPSAAYSLE----NLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLR 357 (1151)
Q Consensus 284 Ttr~~~v~~--~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~ 357 (1151)
|||...-.. ..........+. +|+.+|+.++|...... ... .+.+.+|.+.|+|.|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~----~~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS----PIE---AAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC----CCC---HHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999742111 111111245555 99999999999765411 111 26678899999999999999988775
Q ss_pred CCCCHHHHHHHHhhhcccCCC-ChhhHHHHHHH-hhcCCChhHHHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCC
Q 044085 358 GKYDPKDWEDVLNSKIWDLDE-DKSGIMRALRV-SYYYLPSHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDG 435 (1151)
Q Consensus 358 ~~~~~~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 435 (1151)
...... .... +.+.. ....+...+.- .|+.||++.+..+...|+++ .++.+ +.. .+...
T Consensus 231 ~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~~-----~l~~~---- 291 (903)
T PRK04841 231 QNNSSL--HDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LIV-----RVTGE---- 291 (903)
T ss_pred hCCCch--hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HHH-----HHcCC----
Confidence 442110 0111 11111 12235554443 48899999999999999996 34433 221 11111
Q ss_pred ccHHHHHHHHHHHHHhCcccc-cccCCCceeehhHHHHHHHhhhc
Q 044085 436 IEMEELGRKSFQVLHSRSFFQ-RSKIDASWFLMHDLIHDLASWSS 479 (1151)
Q Consensus 436 ~~~~~~~~~~~~~L~~~~l~~-~~~~~~~~~~~H~lv~~~a~~~~ 479 (1151)
+.+...+++|.+++++. +.+.+...|+.|++++++.....
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 22467899999999965 33323457899999999987653
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=4.9e-14 Score=128.45 Aligned_cols=106 Identities=30% Similarity=0.359 Sum_probs=77.0
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeec
Q 044085 554 RLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKN 633 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 633 (1151)
++.++..|-|++|.++.+|..|..+.+|+.|++++|+|+++|.+++.+++|+.|+++-| .+..+|.+|+.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 45566677778888888887788888888888888888888888888888888888777 67778888888888888888
Q ss_pred CCCCcc-ccCcccccCccCCCccCeeEe
Q 044085 634 SHSNLF-EEMPLRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 634 ~~~~~~-~~~p~~i~~L~~L~~L~~~~~ 660 (1151)
.+|++. ..+|..|.-|+.|+.|.+..+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dn 137 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDN 137 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCC
Confidence 777643 235555555665655544433
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1.6e-09 Score=125.03 Aligned_cols=301 Identities=16% Similarity=0.116 Sum_probs=174.7
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHH
Q 044085 140 DEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 140 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
.++.++||++++++|...+...-. +.....+.|+|++|+|||++++.++++....... -..+++++....+...++.
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~-~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVK-VVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCcCCCHHHHHH
Confidence 456899999999999999855421 1234467899999999999999999965432211 2356666666677888899
Q ss_pred HHHHHhcC-C--CCCcchHHHHHHHHHHhc--CCceEEEEeCCCCCC----hhhHHhhhccccCCCCCcE--EEEecCcc
Q 044085 220 VILQAAVG-S--VDVNDLNLLQLQLENQLK--NKKFLLVLDDMWTEN----YDDWTNLCKPFKAGLPGSK--IIVTTRNE 288 (1151)
Q Consensus 220 ~i~~~~~~-~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~~~~gs~--iivTtr~~ 288 (1151)
.++.++.. . ....+.+.....+.+.+. +++.+||+|+++.-. .+.+..+...... ..+++ +|.++...
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDL 183 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCc
Confidence 99998863 2 122345666677777775 456899999996421 1223333332222 12333 56665554
Q ss_pred ccccccc------CCCceeecCCCChhhhHHHHHHhhcCC--CCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh--c-
Q 044085 289 DVSSMVT------TPSAAYSLENLLRDDCLSIFVRHSLGR--TDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL--R- 357 (1151)
Q Consensus 289 ~v~~~~~------~~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L--~- 357 (1151)
.+..... -....+.+.+++.++..+++..++... ...-.+..++.+++......|..+.|+..+-.+. +
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3322211 112268999999999999998876321 1111222223333333333466777877764432 1
Q ss_pred --CC--CCHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCChhHHHHHhhhccC-CC-CcccChHHHHH--HHHHcCCc
Q 044085 358 --GK--YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLL-PK-GYPFDERQIVL--LWMAEGLL 429 (1151)
Q Consensus 358 --~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~--~w~a~g~i 429 (1151)
+. -+.+....+.+.. -.....-.+..||.+.|..+..++.. .. ...+....+.. ..+++.+-
T Consensus 264 ~~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HcCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 11 2455555555432 12234556889999988765554422 21 13344444443 23332221
Q ss_pred ccCCCCccHHHHHHHHHHHHHhCcccccc
Q 044085 430 QHKTDGIEMEELGRKSFQVLHSRSFFQRS 458 (1151)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 458 (1151)
.. .........|+.+|...|+|+..
T Consensus 334 ~~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 YE----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CC----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 10 11123356688999999998754
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.24 E-value=4.2e-13 Score=122.42 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=78.5
Q ss_pred ccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCCc
Q 044085 575 IGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRT 654 (1151)
Q Consensus 575 i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~ 654 (1151)
+-++.+.+.|-||+|.++.+|..|..|.+|+.|++.+| .++++|.+++.+++|++|+++-|. +..+|.+||.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhh
Confidence 44678889999999999999999999999999999998 899999999999999999999988 6789999999999999
Q ss_pred cCeeEec
Q 044085 655 LAKFAVG 661 (1151)
Q Consensus 655 L~~~~~~ 661 (1151)
|++..+.
T Consensus 107 ldltynn 113 (264)
T KOG0617|consen 107 LDLTYNN 113 (264)
T ss_pred hhccccc
Confidence 9877664
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=1.8e-09 Score=117.46 Aligned_cols=182 Identities=20% Similarity=0.140 Sum_probs=115.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH-----
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQ----- 244 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~----- 244 (1151)
.++.|+|++|+||||+++.+++.... ..+ ..+|+ +....+..++++.++..++......+.......+...
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~--~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQ-ERV--VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCC-CCe--EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 47899999999999999999985431 111 22343 3334577788888888877332223333333333332
Q ss_pred hcCCceEEEEeCCCCCChhhHHhhhccccC---CCCCcEEEEecCcccccccc--------c-CCCceeecCCCChhhhH
Q 044085 245 LKNKKFLLVLDDMWTENYDDWTNLCKPFKA---GLPGSKIIVTTRNEDVSSMV--------T-TPSAAYSLENLLRDDCL 312 (1151)
Q Consensus 245 l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~---~~~gs~iivTtr~~~v~~~~--------~-~~~~~~~l~~L~~~~~~ 312 (1151)
..+++.++|+||+|..+...++.+...... ......|++|.... ....+ . .....+.+.+++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 257889999999988766667766532221 12223455655432 21111 1 11126789999999999
Q ss_pred HHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 313 SIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 313 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+++...+..........-..+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99887664322111112234789999999999999999998876
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=1.2e-11 Score=150.82 Aligned_cols=124 Identities=28% Similarity=0.329 Sum_probs=99.2
Q ss_pred CCCcccEEEecCcc--ccccCc-cccCCCcccEEEccccc-ccccchhhhcCCCCcEEeccccccccccccccccCCccC
Q 044085 554 RLRRLRVLSLCGYW--ILQLPN-DIGELKHLRYLEFSRTA-IEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLR 629 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~--i~~lp~-~i~~l~~Lr~L~Ls~n~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~ 629 (1151)
.++.|++|-+.+|. +..++. .|..+++|++|||++|. +..+|++|+.|.+||+|+++++ .+..+|.++.+|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 44579999999986 677764 47889999999999765 7899999999999999999999 8999999999999999
Q ss_pred eeecCCCCccccCcccccCccCCCccCeeEec-cCCCCCccccccccccc
Q 044085 630 HLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVG-KSNCSGLRELRSLTLLQ 678 (1151)
Q Consensus 630 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~l~~L~~L~~l~ 678 (1151)
||++..+.....+|.....|.+|++|.++... ..+...+.++..|..+.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 99999988666666666679999999887765 22333344444444443
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.17 E-value=9e-09 Score=117.45 Aligned_cols=302 Identities=14% Similarity=0.082 Sum_probs=171.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh-cc--CCCceEEEEeCCCCCHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE-EH--FPDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~--f~~~~~wv~vs~~~~~~~~ 217 (1151)
++.++||++++++|..++..... +.....+.|+|++|+|||++++.++++.... .. .+-..+|+.+....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 35799999999999999875321 1234578999999999999999999854211 11 1013567777777778889
Q ss_pred HHHHHHHhc---CC--CCCcchHHHHHHHHHHhc--CCceEEEEeCCCCCC---hhhHHhhhccc-cCCC--CCcEEEEe
Q 044085 218 TKVILQAAV---GS--VDVNDLNLLQLQLENQLK--NKKFLLVLDDMWTEN---YDDWTNLCKPF-KAGL--PGSKIIVT 284 (1151)
Q Consensus 218 ~~~i~~~~~---~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~---~~~~~~l~~~l-~~~~--~gs~iivT 284 (1151)
+..|+.++. .. ....+.++....+.+.+. +++++||||+++.-. ......+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999883 11 112234455555666653 567899999996431 11122222221 1111 22234455
Q ss_pred cCcccccccc----cC--CCceeecCCCChhhhHHHHHHhhcC-CCCCCCCchHHHHHHHHHHHcCCChhHHHH-HHHHh
Q 044085 285 TRNEDVSSMV----TT--PSAAYSLENLLRDDCLSIFVRHSLG-RTDFSAHQYLSEIGEKIVDKCNGSPLAAKT-LGGLL 356 (1151)
Q Consensus 285 tr~~~v~~~~----~~--~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~g~Plai~~-~~~~L 356 (1151)
|......... .. ....+.+++.+.+|..+++..++-. .......++..+...+++....|.|-.+.. +-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5433321111 11 1126899999999999999887631 111122333445556677777888854433 22211
Q ss_pred --c---C--CCCHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCChhHHHHHhhhccC--CCCcccChHHHHHHH--HH
Q 044085 357 --R---G--KYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLL--PKGYPFDERQIVLLW--MA 425 (1151)
Q Consensus 357 --~---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~w--~a 425 (1151)
+ + .-+.+....+.... -.....-+...||.+.|..+..++.. .++..+....+...+ ++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 1 12344444444322 11234456778999888666554421 133445555555522 12
Q ss_pred cCCcccCCCCccHHHHHHHHHHHHHhCcccccc
Q 044085 426 EGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRS 458 (1151)
Q Consensus 426 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 458 (1151)
+.+ . -....+.....++++|...|+++..
T Consensus 322 ~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 322 EDI-G---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred Hhc-C---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 211 1 1122345677788999999999864
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=4.3e-12 Score=142.56 Aligned_cols=64 Identities=19% Similarity=0.215 Sum_probs=33.1
Q ss_pred ccCCCcccEEEccccccc-----ccchhhhcCCCCcEEeccccccc------cccccccccCCccCeeecCCCCc
Q 044085 575 IGELKHLRYLEFSRTAIE-----VLPESVSTLYNLQTLILERCYRL------KKLFPDIGNLTNLRHLKNSHSNL 638 (1151)
Q Consensus 575 i~~l~~Lr~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l------~~lp~~~~~L~~L~~L~l~~~~~ 638 (1151)
+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+..+++|++|++++|.+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 344444555555555542 34444555555666666554211 12333455566777777766653
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.00 E-value=2.3e-08 Score=110.78 Aligned_cols=277 Identities=16% Similarity=0.135 Sum_probs=149.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+|||+++.+++|..++..... .......+.++|++|+|||+||+.+++... ..+ ..+..+....... +...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~----~~~~~~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL----KITSGPALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE----EEeccchhcCchh-HHHH
Confidence 4699999999999998864321 112345678999999999999999998432 222 1122111111111 1222
Q ss_pred HHHhcCCC--CCcc----hHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccccccccc
Q 044085 222 LQAAVGSV--DVND----LNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSMVT 295 (1151)
Q Consensus 222 ~~~~~~~~--~~~~----~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 295 (1151)
+..+.... -.++ ....++.+...+.+.+..+|+|+.+.. ..| ...++ +.+-|.+||+...+.....
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecCC---CeEEEEecCCccccCHHHH
Confidence 22222110 0000 012233455555555555666655332 111 11111 2456777888765544321
Q ss_pred C-CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcc
Q 044085 296 T-PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLNSKIW 374 (1151)
Q Consensus 296 ~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~~~~~ 374 (1151)
. ....+.++++++++..+++.+.+... ..... .+....|++.|+|.|-.+..++..+ |.........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~-~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLL-NVEIE---PEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHh-CCCcC---HHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC
Confidence 1 11267999999999999999877432 22222 3677889999999997765555432 1111000000
Q ss_pred cCC-CChhhHHHHHHHhhcCCChhHHHHHh-hhccCCCCcccChHHHHHHHHHcCCcccCCCCccHHHHHHHHHH-HHHh
Q 044085 375 DLD-EDKSGIMRALRVSYYYLPSHVKRCFA-HCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEMEELGRKSFQ-VLHS 451 (1151)
Q Consensus 375 ~~~-~~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~ 451 (1151)
... .....+...+...|..++++.+..+. ....++.+ .+..+.+-... |- ....++..++ .|++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQ 282 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHH
Confidence 000 00112333356678889888777666 55666543 34433332211 11 1134566677 6999
Q ss_pred Cccccccc
Q 044085 452 RSFFQRSK 459 (1151)
Q Consensus 452 ~~l~~~~~ 459 (1151)
++||+...
T Consensus 283 ~~li~~~~ 290 (305)
T TIGR00635 283 IGFLQRTP 290 (305)
T ss_pred cCCcccCC
Confidence 99998653
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.98 E-value=2e-08 Score=111.70 Aligned_cols=277 Identities=18% Similarity=0.204 Sum_probs=148.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+|+|+++.++.+..++..... .+.....+.|+|++|+||||+|+.+++... ..+ .++... .......+..+
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~----~~~~~~-~~~~~~~l~~~ 96 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI----RITSGP-ALEKPGDLAAI 96 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe----EEEecc-cccChHHHHHH
Confidence 5799999999999888864321 112455788999999999999999999432 222 112211 11111222222
Q ss_pred HHHhcCCC--CCcch----HHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccccccccc
Q 044085 222 LQAAVGSV--DVNDL----NLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSMVT 295 (1151)
Q Consensus 222 ~~~~~~~~--~~~~~----~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 295 (1151)
+..+.... -.++. ....+.+...+.+.+..+|+|+..... .+...++ +.+-|..||+...+.....
T Consensus 97 l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 97 LTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHH
Confidence 22222100 00000 112223334444444445555442210 0000111 2455677777655544321
Q ss_pred CC-CceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcc
Q 044085 296 TP-SAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLNSKIW 374 (1151)
Q Consensus 296 ~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~~~~~ 374 (1151)
.. ...+.++++++++..+++.+.+... .....+ +.+..|++.|+|.|-.+..+...+ ..|.......
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~-~~~~~~---~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~-- 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARIL-GVEIDE---EGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDG-- 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHc-CCCcCH---HHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCC--
Confidence 11 1268999999999999999877432 222223 678999999999996555555432 2222221110
Q ss_pred cCC-CChhhHHHHHHHhhcCCChhHHHHHh-hhccCCCCcccChHHHHHHHHHcCCcccCCCCccHHHHHHHHHH-HHHh
Q 044085 375 DLD-EDKSGIMRALRVSYYYLPSHVKRCFA-HCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEMEELGRKSFQ-VLHS 451 (1151)
Q Consensus 375 ~~~-~~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~ 451 (1151)
... ..-......+...|..|++..+..+. ....|+.+ .+..+.+-... .. +. +.++..++ .|++
T Consensus 237 ~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~--~~----~~~~~~~e~~Li~ 303 (328)
T PRK00080 237 VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE--ER----DTIEDVYEPYLIQ 303 (328)
T ss_pred CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC--Cc----chHHHHhhHHHHH
Confidence 011 01123344556677888888777775 66777655 45554443321 11 11 23444455 7999
Q ss_pred Cccccccc
Q 044085 452 RSFFQRSK 459 (1151)
Q Consensus 452 ~~l~~~~~ 459 (1151)
.+|++...
T Consensus 304 ~~li~~~~ 311 (328)
T PRK00080 304 QGFIQRTP 311 (328)
T ss_pred cCCcccCC
Confidence 99998654
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.97 E-value=2e-09 Score=114.82 Aligned_cols=193 Identities=20% Similarity=0.187 Sum_probs=101.0
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH--
Q 044085 144 VYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI-- 221 (1151)
Q Consensus 144 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i-- 221 (1151)
|+||++++++|.+++.... .+.+.|+|+.|+|||+|++++.+.... .. ...+|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~------~~~~~l~G~rg~GKTsLl~~~~~~~~~-~~--~~~~y~~~~~~~~~~-~~~~~~~ 70 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP------SQHILLYGPRGSGKTSLLKEFINELKE-KG--YKVVYIDFLEESNES-SLRSFIE 70 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---E--ECCCHHCCTTBSHHH-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhc------CcEEEEEcCCcCCHHHHHHHHHHHhhh-cC--CcEEEEecccchhhh-HHHHHHH
Confidence 6899999999999997642 358899999999999999999994321 11 134455444443222 22222
Q ss_pred --------HHHhc---CCCC--------CcchHHHHHHHHHHhc--CCceEEEEeCCCCCC------hhhHHhhhccccC
Q 044085 222 --------LQAAV---GSVD--------VNDLNLLQLQLENQLK--NKKFLLVLDDMWTEN------YDDWTNLCKPFKA 274 (1151)
Q Consensus 222 --------~~~~~---~~~~--------~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~------~~~~~~l~~~l~~ 274 (1151)
...+. .... ..........+.+.+. +++++||+||+..-. ..-...+...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~ 150 (234)
T PF01637_consen 71 ETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS 150 (234)
T ss_dssp HHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh
Confidence 11121 1111 1122222333333333 356999999994322 1112223333322
Q ss_pred ---CCCCcEEEEecCccccccc--------ccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcC
Q 044085 275 ---GLPGSKIIVTTRNEDVSSM--------VTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCN 343 (1151)
Q Consensus 275 ---~~~gs~iivTtr~~~v~~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~ 343 (1151)
..+.+.|+++|. ..+... ..... .+.+++|+.+++++++...+-.. ... +.-.+..++|+..+|
T Consensus 151 ~~~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~-~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~g 225 (234)
T PF01637_consen 151 LLSQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFS-HIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTG 225 (234)
T ss_dssp ----TTEEEEEEESS-HHHHHHTT-TTSTTTT----EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHT
T ss_pred ccccCCceEEEECCc-hHHHHHhhcccCccccccc-eEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhC
Confidence 333445555554 322221 12223 69999999999999998865332 111 122366799999999
Q ss_pred CChhHHHH
Q 044085 344 GSPLAAKT 351 (1151)
Q Consensus 344 g~Plai~~ 351 (1151)
|+|..|..
T Consensus 226 G~P~~l~~ 233 (234)
T PF01637_consen 226 GNPRYLQE 233 (234)
T ss_dssp T-HHHHHH
T ss_pred CCHHHHhc
Confidence 99998864
No 32
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.91 E-value=1.4e-07 Score=109.20 Aligned_cols=291 Identities=19% Similarity=0.214 Sum_probs=189.0
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC-CCCHHHHHHHHHHHhc--
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE-DFDAVGITKVILQAAV-- 226 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~-~~~~~~~~~~i~~~~~-- 226 (1151)
.+.++++.|... .+.+.+.|..++|.|||||+.+... ...+. ..+.|.++++ +-++......++..+.
T Consensus 23 ~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~~~~--~~v~Wlslde~dndp~rF~~yLi~al~~~ 93 (894)
T COG2909 23 VRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LAADG--AAVAWLSLDESDNDPARFLSYLIAALQQA 93 (894)
T ss_pred ccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hcCcc--cceeEeecCCccCCHHHHHHHHHHHHHHh
Confidence 344577777654 3678999999999999999999986 33232 5789999975 4567788888888776
Q ss_pred CCCC------------CcchHHHHHHHHHHhc--CCceEEEEeCCCCCChhhH-HhhhccccCCCCCcEEEEecCccccc
Q 044085 227 GSVD------------VNDLNLLQLQLENQLK--NKKFLLVLDDMWTENYDDW-TNLCKPFKAGLPGSKIIVTTRNEDVS 291 (1151)
Q Consensus 227 ~~~~------------~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~-~~l~~~l~~~~~gs~iivTtr~~~v~ 291 (1151)
.+.. ..+...+...+...+. .++..+||||---...... +.+...+.....+-..|||||+..-.
T Consensus 94 ~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l 173 (894)
T COG2909 94 TPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQL 173 (894)
T ss_pred CccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCC
Confidence 2211 1233334444444443 4689999999743222222 23333344445678899999986432
Q ss_pred ccc--cCCCceeecC----CCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHH
Q 044085 292 SMV--TTPSAAYSLE----NLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDW 365 (1151)
Q Consensus 292 ~~~--~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w 365 (1151)
... .......++. .++.+|+-++|..... .+--+.-.+.+.+..+|-+-|+..++=.+++..+.+.-
T Consensus 174 ~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~ 246 (894)
T COG2909 174 GLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQS 246 (894)
T ss_pred cccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHH
Confidence 211 1111133443 6899999999977541 11123567889999999999999999888844343333
Q ss_pred HHHHhhhcccCCCChhhHHH-HHHHhhcCCChhHHHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCCccHHHHHHH
Q 044085 366 EDVLNSKIWDLDEDKSGIMR-ALRVSYYYLPSHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEMEELGRK 444 (1151)
Q Consensus 366 ~~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 444 (1151)
...+ .+..+.+.. ...--++.||+++|..++-||+++.= . ..|+..- +-++.|..
T Consensus 247 ~~~L-------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~L-------------tg~~ng~a 302 (894)
T COG2909 247 LRGL-------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNAL-------------TGEENGQA 302 (894)
T ss_pred hhhc-------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHHH-------------hcCCcHHH
Confidence 2222 222222333 34446899999999999999998642 1 2233211 11344778
Q ss_pred HHHHHHhCcccc-cccCCCceeehhHHHHHHHhhhcC
Q 044085 445 SFQVLHSRSFFQ-RSKIDASWFLMHDLIHDLASWSSG 480 (1151)
Q Consensus 445 ~~~~L~~~~l~~-~~~~~~~~~~~H~lv~~~a~~~~~ 480 (1151)
.+++|.+++|+- +-+.....|+.|.+..||-+..-.
T Consensus 303 mLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 303 MLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 899999999885 444467899999999999875443
No 33
>PF05729 NACHT: NACHT domain
Probab=98.88 E-value=1e-08 Score=102.53 Aligned_cols=144 Identities=22% Similarity=0.292 Sum_probs=87.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCC---CceEEEEeCCCCCHH---HHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFP---DFRAWAYVSEDFDAV---GITKVILQAAVGSVDVNDLNLLQLQLEN 243 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~---~~~~wv~vs~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 243 (1151)
+++.|+|.+|+||||+++.++.+........ ...+|+..++..... .+...+..+.... ...... .+..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~---~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES--IAPIEE---LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc--hhhhHH---HHHH
Confidence 4789999999999999999998665444331 355666665543322 2333333333211 111111 1222
Q ss_pred -HhcCCceEEEEeCCCCCCh--h-----hHHhhhccccCC--CCCcEEEEecCcccccc---cccCCCceeecCCCChhh
Q 044085 244 -QLKNKKFLLVLDDMWTENY--D-----DWTNLCKPFKAG--LPGSKIIVTTRNEDVSS---MVTTPSAAYSLENLLRDD 310 (1151)
Q Consensus 244 -~l~~k~~LlVlDdvw~~~~--~-----~~~~l~~~l~~~--~~gs~iivTtr~~~v~~---~~~~~~~~~~l~~L~~~~ 310 (1151)
..+.++++||+|++.+-.. . .+..+...+-.. .++.+++||+|...... ...... .+.+.+|++++
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~-~~~l~~~~~~~ 154 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQ-ILELEPFSEED 154 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCc-EEEECCCCHHH
Confidence 2257899999999965321 1 122333222222 46899999999876632 233333 79999999999
Q ss_pred hHHHHHHhh
Q 044085 311 CLSIFVRHS 319 (1151)
Q Consensus 311 ~~~lf~~~~ 319 (1151)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999987653
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=3.1e-10 Score=127.42 Aligned_cols=89 Identities=24% Similarity=0.200 Sum_probs=55.6
Q ss_pred hhcCCCCcccEEEecCcccc-----ccCccccCCCcccEEEcccccccc-------cchhhhcCCCCcEEeccccccccc
Q 044085 550 HVIPRLRRLRVLSLCGYWIL-----QLPNDIGELKHLRYLEFSRTAIEV-------LPESVSTLYNLQTLILERCYRLKK 617 (1151)
Q Consensus 550 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~Ls~n~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~ 617 (1151)
..|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+++|+.|++++|.....
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 34455566777777777763 345556666777777777766552 344566677788888877744333
Q ss_pred cccccccCCc---cCeeecCCCCc
Q 044085 618 LFPDIGNLTN---LRHLKNSHSNL 638 (1151)
Q Consensus 618 lp~~~~~L~~---L~~L~l~~~~~ 638 (1151)
.+..+..+.+ |++|++++|.+
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~~ 120 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNGL 120 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCcc
Confidence 4444444444 77777777764
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.85 E-value=1.8e-08 Score=109.93 Aligned_cols=185 Identities=21% Similarity=0.323 Sum_probs=129.4
Q ss_pred cCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEE
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITEL 1016 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 1016 (1151)
+..+.+++.|+++++.++++| .+|++|++|.+++|..+..+|..+. ++|++|++++|..+..+| ++|+.|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe~L 117 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVRSL 117 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccceE
Confidence 345788999999999999998 5889999999999998888887553 689999999996554444 568999
Q ss_pred EecCCCccccccccCCCCC-CCcceEEeccCC-CCccccc-CCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCC
Q 044085 1017 HIEGPNICKLFFDLGFHNL-TSVRDLFIKDGL-EDEVSFQ-KLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPN 1093 (1151)
Q Consensus 1017 ~Ls~n~l~~~~~~~~~~~l-~~L~~L~l~~~~-~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~ 1093 (1151)
+++++....+ ..+ ++|+.|.+.++. ......+ .+|++|+.|++++|..+...+.+. .+|+.|+++.|..
T Consensus 118 ~L~~n~~~~L------~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~ 189 (426)
T PRK15386 118 EIKGSATDSI------KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQK 189 (426)
T ss_pred EeCCCCCccc------ccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccccc
Confidence 9987765432 223 468888886522 2223333 388999999999998664222333 6999999987632
Q ss_pred C-CcCCCCCCCCCcceEeeccCchHHHh-hhhcCcccccccccCeEEeC
Q 044085 1094 L-ISLPKNGLPPSLVYVDIYSCPYLEER-CKVKGVYWHLVADIPYVRLN 1140 (1151)
Q Consensus 1094 l-~~l~~~~~~~sL~~L~i~~c~~L~~~-~~~~g~~~~~i~~i~~~~~~ 1140 (1151)
. ..++...+|+++ .|++.+|-.+... +...|-...-.+-.+..++.
T Consensus 190 ~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~d~~i~~~~~~~~~~~~~~ 237 (426)
T PRK15386 190 TTWNISFEGFPDGL-DIDLQNSVLLSPDVFKDKNITFQGNALDVALHFR 237 (426)
T ss_pred ccccCccccccccc-EechhhhcccCHHHhhcccccccCcccchhcccc
Confidence 2 234555678888 9999999776553 22444444444444445554
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.82 E-value=5.4e-07 Score=105.12 Aligned_cols=213 Identities=15% Similarity=0.092 Sum_probs=125.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh---ccCC-CceEEEEeCCCCCHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE---EHFP-DFRAWAYVSEDFDAVG 216 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~~wv~vs~~~~~~~ 216 (1151)
++.+.|||+++++|...|...-. +.....++.|+|++|+|||++++.|.+..... ...+ -.+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 46789999999999998876432 11233578899999999999999998754211 1221 1356777777678888
Q ss_pred HHHHHHHHhcCCC--CCcchHHHHHHHHHHhc---CCceEEEEeCCCCCChhhHHhhhccccC-CCCCcEEEE--ecCcc
Q 044085 217 ITKVILQAAVGSV--DVNDLNLLQLQLENQLK---NKKFLLVLDDMWTENYDDWTNLCKPFKA-GLPGSKIIV--TTRNE 288 (1151)
Q Consensus 217 ~~~~i~~~~~~~~--~~~~~~~~~~~l~~~l~---~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iiv--Ttr~~ 288 (1151)
++..|.+++.... ...........+...+. ....+||||+|..-....-+.+...+.+ ...+++|+| ++...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 9999998885221 12222334444444442 2245899999953211121223333332 124556544 33322
Q ss_pred cc--------cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 289 DV--------SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 289 ~v--------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+. ...+.. . .+...+.+.++-.+++..++-.....-.+..++-+|+.++...|-.-.|+.++-.+.
T Consensus 913 DLperLdPRLRSRLg~-e-eIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAF-G-RLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhcccc-c-cccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 22 222221 1 467799999999999999885432222223333444444444455566666665444
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.77 E-value=9.6e-08 Score=101.21 Aligned_cols=203 Identities=23% Similarity=0.245 Sum_probs=119.3
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
.+.-.-.||++|+||||||+.+.. .....| ..+|...+-.+-++.++++.. .....+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f------~~~sAv~~gvkdlr~i~e~a~---------------~~~~~g 103 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAG--TTNAAF------EALSAVTSGVKDLREIIEEAR---------------KNRLLG 103 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHH--hhCCce------EEeccccccHHHHHHHHHHHH---------------HHHhcC
Confidence 455667899999999999999998 444445 445555444444444443321 223348
Q ss_pred CceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE--ecCcccc--cccccCCCceeecCCCChhhhHHHHHHhhcCCC
Q 044085 248 KKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV--TTRNEDV--SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRT 323 (1151)
Q Consensus 248 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v--~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 323 (1151)
++.+|.+|.|..-+..+.+.+...+. .|.-|+| ||.++.. -....+..+++.+++|+.+|...++.+.+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 99999999997766666666554444 4555555 7777632 223333344999999999999999988443222
Q ss_pred CC-C-CCchH-HHHHHHHHHHcCCChhHHHHHHHHh---cCC---CCHHHHHHHHhhhcccCCCC---hhhHHHHHHHhh
Q 044085 324 DF-S-AHQYL-SEIGEKIVDKCNGSPLAAKTLGGLL---RGK---YDPKDWEDVLNSKIWDLDED---KSGIMRALRVSY 391 (1151)
Q Consensus 324 ~~-~-~~~~~-~~~~~~i~~~c~g~Plai~~~~~~L---~~~---~~~~~w~~~~~~~~~~~~~~---~~~i~~~l~~sy 391 (1151)
.. . ....+ ++....+++.++|---++-....+. ... ...+..+++++........+ .-++..+|.-|-
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSv 260 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSV 260 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhh
Confidence 11 1 11112 3567778889988765444333332 211 12455555555433332222 234555666565
Q ss_pred cCCCh
Q 044085 392 YYLPS 396 (1151)
Q Consensus 392 ~~L~~ 396 (1151)
..=.+
T Consensus 261 RGSD~ 265 (436)
T COG2256 261 RGSDP 265 (436)
T ss_pred ccCCc
Confidence 54433
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.5e-09 Score=108.69 Aligned_cols=125 Identities=25% Similarity=0.266 Sum_probs=98.1
Q ss_pred CCCccEEEEeCCccccccCC-CCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEe
Q 044085 940 LSHITTISMYGSRLVSFAEG-GLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHI 1018 (1151)
Q Consensus 940 l~~L~~L~ls~n~l~~~~~~-~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 1018 (1151)
-..|+++++|+|.|+.+... .+.+.++.|++++|.+... ..+..+++|+.|+||+|.+.. +...-..+.++++|.|
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL 359 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence 46789999999999888765 3447999999999998764 347889999999999997653 3333356788999999
Q ss_pred cCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC---CCCCCCCCCeeeEeCCCC
Q 044085 1019 EGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS---FVRNLTSLERLTLCECPN 1093 (1151)
Q Consensus 1019 s~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~ 1093 (1151)
++|.|.++. ++..+-+|..|++++ +++..+. ..+++|.|+.|.+.+||.
T Consensus 360 a~N~iE~LS---GL~KLYSLvnLDl~~-----------------------N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIETLS---GLRKLYSLVNLDLSS-----------------------NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHhhhh---hhHhhhhheeccccc-----------------------cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 999987665 677888888888888 3444443 678999999999999973
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=9.5e-10 Score=116.38 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=96.0
Q ss_pred cCCCCCccEEEEeCCccccccCCCC---CCCccEEEEcCCCCcc-cCccccCCCCccceeeecCCCCCccCCCCCCCCCC
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGL---PSNLCSLTLFGCRYLT-ALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPN 1012 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~---~~~L~~L~L~~n~~~~-~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 1012 (1151)
...+++|+.|+++.|++..+..... .+.|+.|.|+.|.+.. .+-.....+|+|+.|++..|............+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 3467888888888888765543322 2588888888888763 22234567888888888888644443444466778
Q ss_pred ccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccC--------CCCCcceEEecCCCCCCcCC---CCCCCC
Q 044085 1013 ITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK--------LPNSLVKLNIREFPGLESLS---FVRNLT 1081 (1151)
Q Consensus 1013 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------~~~~L~~L~l~~c~~l~~l~---~l~~l~ 1081 (1151)
|+.|+|++|++.+........+++.|..|.++.|......++. ...+|++|++.. +++.+++ .+..++
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLE 326 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccc
Confidence 8888888888766664445677888888888885443333322 123555555555 2333333 334445
Q ss_pred CCCeeeEeCC
Q 044085 1082 SLERLTLCEC 1091 (1151)
Q Consensus 1082 ~L~~L~l~~c 1091 (1151)
+|+.|.+..+
T Consensus 327 nlk~l~~~~n 336 (505)
T KOG3207|consen 327 NLKHLRITLN 336 (505)
T ss_pred hhhhhhcccc
Confidence 5555555444
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.74 E-value=3.4e-07 Score=105.00 Aligned_cols=182 Identities=21% Similarity=0.269 Sum_probs=109.2
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEA---LVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
+++||++..+.. +.+++... ....+.++|++|+||||+|+.+++. ....| +.++......+-.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~------~~l~a~~~~~~~i 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF------EALSAVTSGVKDL 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE------EEEecccccHHHH
Confidence 458888877555 77777543 3456788999999999999999984 22233 3333222111122
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE--ecCccc--ccccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV--TTRNED--VSSMV 294 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~--v~~~~ 294 (1151)
+.++.... .....+++.+|++|+++.......+.+...+.. |..+++ ||.+.. +....
T Consensus 78 r~ii~~~~---------------~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 78 REVIEEAR---------------QRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHHHHH---------------HhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHH
Confidence 22222211 011246789999999987666666666655543 444444 444432 22222
Q ss_pred cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 295 TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 295 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
......+.+.++++++.+.++.+.+..... ...+...+..+.|++.|+|.+..+..+....
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 222238999999999999999876532111 0001224677889999999997776554443
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.72 E-value=2.6e-09 Score=104.06 Aligned_cols=108 Identities=18% Similarity=0.217 Sum_probs=40.3
Q ss_pred cCCCCCccEEEEeCCccccccCCC-CCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCC-CCCCCcc
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGG-LPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEV-GFPPNIT 1014 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~-~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~ 1014 (1151)
+.++.++++|+|.+|.|+.+.... ...+|+.|++++|.+... .++..++.|++|++++|.+... +..+ ..+|+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 456678999999999998886554 236899999999998763 4688899999999999988753 3223 3589999
Q ss_pred EEEecCCCccccccccCCCCCCCcceEEeccCC
Q 044085 1015 ELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGL 1047 (1151)
Q Consensus 1015 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~ 1047 (1151)
+|++++|.|.+...-..+..+++|+.|++.+|.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 999999998876654457788889999988853
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.70 E-value=5.3e-10 Score=121.87 Aligned_cols=176 Identities=26% Similarity=0.331 Sum_probs=115.9
Q ss_pred hhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccC
Q 044085 550 HVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLR 629 (1151)
Q Consensus 550 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~ 629 (1151)
..+..|-.|..|.|..|.+..+|..+++|..|.||||+.|+++.+|..++.|+ |+.|.+++| +++.+|..++.+..|.
T Consensus 92 ~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 92 EEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLA 169 (722)
T ss_pred hHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHH
Confidence 34455666777777777777777777777777777777777777777777665 777777777 7777777777777777
Q ss_pred eeecCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCce
Q 044085 630 HLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEAL 709 (1151)
Q Consensus 630 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L 709 (1151)
+||.+.|. ...+|..++.+.+|+.|....+...
T Consensus 170 ~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~---------------------------------------------- 202 (722)
T KOG0532|consen 170 HLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLE---------------------------------------------- 202 (722)
T ss_pred Hhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhh----------------------------------------------
Confidence 77777777 4567777777777766643333110
Q ss_pred EEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC---CCCC
Q 044085 710 SLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP---SVGH 786 (1151)
Q Consensus 710 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~---~l~~ 786 (1151)
...+.+. .-.|..|+++.|++..+|-.+.. +..|++|.|.+|++..... .-|.
T Consensus 203 ---------------------~lp~El~-~LpLi~lDfScNkis~iPv~fr~--m~~Lq~l~LenNPLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 203 ---------------------DLPEELC-SLPLIRLDFSCNKISYLPVDFRK--MRHLQVLQLENNPLQSPPAQICEKGK 258 (722)
T ss_pred ---------------------hCCHHHh-CCceeeeecccCceeecchhhhh--hhhheeeeeccCCCCCChHHHHhccc
Confidence 0111111 11356677777777778877764 7888888888888754322 2334
Q ss_pred CCCcceeeccCc
Q 044085 787 LPSLKNLVIKGM 798 (1151)
Q Consensus 787 l~~L~~L~L~~~ 798 (1151)
..=-++|+..-|
T Consensus 259 VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 259 VHIFKYLSTQAC 270 (722)
T ss_pred eeeeeeecchhc
Confidence 444556666555
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=98.68 E-value=2.2e-07 Score=97.16 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=96.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
+.+.|+|+.|+|||+||+.+++.. ..+. ..+.|+.+... .....+ +.+.+. +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~--~~~~-~~~~y~~~~~~---~~~~~~--------------------~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY--LLNQ-RTAIYIPLSKS---QYFSPA--------------------VLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcC-CCeEEeeHHHh---hhhhHH--------------------HHhhcc-cC
Confidence 578999999999999999999953 3334 44567765421 000001 111122 23
Q ss_pred eEEEEeCCCCCC-hhhHHh-hhccccCC-CCCcEEE-EecCc---------ccccccccCCCceeecCCCChhhhHHHHH
Q 044085 250 FLLVLDDMWTEN-YDDWTN-LCKPFKAG-LPGSKII-VTTRN---------EDVSSMVTTPSAAYSLENLLRDDCLSIFV 316 (1151)
Q Consensus 250 ~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~gs~ii-vTtr~---------~~v~~~~~~~~~~~~l~~L~~~~~~~lf~ 316 (1151)
-+||+||+|... ...|+. +...+... ..|..+| +|++. +++...+.... .++++++++++.++++.
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~-~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGE-IYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCC-eeeCCCCCHHHHHHHHH
Confidence 599999998632 245653 33333322 2355554 44543 24444444444 88999999999999999
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 317 RHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+.++... ...+ .++..-|++++.|..-++..+-..|
T Consensus 172 ~~a~~~~-l~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRG-IELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9886432 2222 3788889999998877766655544
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.67 E-value=2.4e-08 Score=97.33 Aligned_cols=105 Identities=30% Similarity=0.364 Sum_probs=52.1
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhh-hcCCCCcEEeccccccccccc--cccccCCccCe
Q 044085 554 RLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESV-STLYNLQTLILERCYRLKKLF--PDIGNLTNLRH 630 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~ 630 (1151)
.+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.++..+ ..+++|++|++++| .+..+. ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 5678999999999998885 5788999999999999999887665 46899999999988 555443 23678899999
Q ss_pred eecCCCCccccCcc----cccCccCCCccCeeEec
Q 044085 631 LKNSHSNLFEEMPL----RIGKLTSLRTLAKFAVG 661 (1151)
Q Consensus 631 L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 661 (1151)
|++.+|++.. .+. -+..+++|+.|+...+.
T Consensus 118 L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 118 LSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETT
T ss_pred eeccCCcccc-hhhHHHHHHHHcChhheeCCEEcc
Confidence 9999998543 232 26678888888765553
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.5e-09 Score=112.21 Aligned_cols=82 Identities=18% Similarity=0.127 Sum_probs=37.4
Q ss_pred CccEEEEcCCCCcccC-ccccCCCCccceeeecCCCCCcc-CCCC-----CCCCCCccEEEecCCCccccccccCCCCCC
Q 044085 964 NLCSLTLFGCRYLTAL-PNGIYNLSSLQHLEIRACPRIAS-IPEE-----VGFPPNITELHIEGPNICKLFFDLGFHNLT 1036 (1151)
Q Consensus 964 ~L~~L~L~~n~~~~~l-~~~l~~l~~L~~L~L~~~~~~~~-~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 1036 (1151)
.|+.|+|++|++...- -...+.++.|+.|+++.|.+... +|+. ...+++|++|+++.|++.+...-..+..++
T Consensus 247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~ 326 (505)
T KOG3207|consen 247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE 326 (505)
T ss_pred HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc
Confidence 4444444444443311 12234555555555555555431 2222 234566666666666654433222233444
Q ss_pred CcceEEecc
Q 044085 1037 SVRDLFIKD 1045 (1151)
Q Consensus 1037 ~L~~L~l~~ 1045 (1151)
+|+.|.+..
T Consensus 327 nlk~l~~~~ 335 (505)
T KOG3207|consen 327 NLKHLRITL 335 (505)
T ss_pred hhhhhhccc
Confidence 445544433
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.64 E-value=3.9e-10 Score=118.58 Aligned_cols=110 Identities=20% Similarity=0.356 Sum_probs=64.6
Q ss_pred CeeEEEEecCCCCCCCC---CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCC
Q 044085 766 NLVVLRFRNCNQCTSLP---SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAG 842 (1151)
Q Consensus 766 ~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 842 (1151)
.|+.|.+.+|.-...-+ .....|++++|.+.+|..++...... .....+.|+.+.+..|.++......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s----la~~C~~l~~l~L~~c~~iT~~~Lk----- 209 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS----LARYCRKLRHLNLHSCSSITDVSLK----- 209 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH----HHHhcchhhhhhhcccchhHHHHHH-----
Confidence 45666666666544333 34557788888888776554432111 1122677778887777776654311
Q ss_pred CcccccccCCcccEEEeccCcCccc----CCCCCCCCccEEEEccccCc
Q 044085 843 GDQEAAKGFHSLRELSIINCSKLKG----RLPQRFSSLERVVIRSCEQL 887 (1151)
Q Consensus 843 ~~~~~~~~l~~L~~L~l~~c~~L~~----~~p~~l~~L~~L~l~~~~~l 887 (1151)
....++++|++|++++|+.+++ .+..+...++.+...+|...
T Consensus 210 ---~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 210 ---YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred ---HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 1223789999999999998885 12233444555544555544
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=98.62 E-value=4.3e-06 Score=98.03 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=142.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.++.++++.+|+..... +...+.+.|+|++|+||||+|+.++++.. | + .+-++.++..+.. ....+
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~-~-~ielnasd~r~~~-~i~~~ 84 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----W-E-VIELNASDQRTAD-VIERV 84 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----C-C-EEEEcccccccHH-HHHHH
Confidence 4699999999999999975431 12257899999999999999999999532 3 2 3334455433322 22333
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCCh----hhHHhhhccccCCCCCcEEEEecCcc-cccc-ccc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENY----DDWTNLCKPFKAGLPGSKIIVTTRNE-DVSS-MVT 295 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~----~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~-~~~ 295 (1151)
+....... .....++-+||+|++..... ..+..+...+.. .+..||+|+.+. .... ...
T Consensus 85 i~~~~~~~-------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr 149 (482)
T PRK04195 85 AGEAATSG-------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR 149 (482)
T ss_pred HHHhhccC-------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh
Confidence 32221100 00113678999999965321 335555555543 234466665432 2222 222
Q ss_pred CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCC---CCHHHHHHHHhhh
Q 044085 296 TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGK---YDPKDWEDVLNSK 372 (1151)
Q Consensus 296 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~---~~~~~w~~~~~~~ 372 (1151)
.....+.+.+++.++....+.+.+.... ....+ ++...|++.++|-.-.+......+... .+.+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~eg-i~i~~---eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEG-IECDD---EALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcC-CCCCH---HHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 2223789999999999888877664322 22233 678899999999877665544444332 22333333321
Q ss_pred cccCCCChhhHHHHHHHhhc-CCChhHHHHHhhhccCCCCcccChHHHHHHHHHcCCccc
Q 044085 373 IWDLDEDKSGIMRALRVSYY-YLPSHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQH 431 (1151)
Q Consensus 373 ~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~ 431 (1151)
.+...+++.++..-+. .-+......+..+. ++. ..+-.|+.|.+...
T Consensus 224 ----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ----RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ----CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1122456777666554 33333333332222 222 45778999999764
No 48
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=2.5e-06 Score=105.57 Aligned_cols=309 Identities=15% Similarity=0.173 Sum_probs=176.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeC---CC--CC-HHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVS---ED--FD-AVG 216 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs---~~--~~-~~~ 216 (1151)
.++||+.+.+.|...+..... +...++.+.|..|||||+|++.|.. .+.+.+ ...+--... .. +. ..+
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~-~~~i~~~f~q~~~~ipl~~lvq 74 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQR-GYFIKGKFDQFERNIPLSPLVQ 74 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccc-eeeeHhhcccccCCCchHHHHH
Confidence 368999999999999877643 3456999999999999999999998 333332 111111111 11 11 233
Q ss_pred HHHHHHHHhcCCCC------------------------------------------CcchHH-----HHHHHHHHhc-CC
Q 044085 217 ITKVILQAAVGSVD------------------------------------------VNDLNL-----LQLQLENQLK-NK 248 (1151)
Q Consensus 217 ~~~~i~~~~~~~~~------------------------------------------~~~~~~-----~~~~l~~~l~-~k 248 (1151)
.++++..++....+ ...... ....+..... .|
T Consensus 75 ~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~ 154 (849)
T COG3899 75 AFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEH 154 (849)
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccC
Confidence 44555554420000 000001 1112222333 56
Q ss_pred ceEEEEeCCCCCChhhHHhhhccccCCC----CCcEEEE--ecCcc-cccccccCCCceeecCCCChhhhHHHHHHhhcC
Q 044085 249 KFLLVLDDMWTENYDDWTNLCKPFKAGL----PGSKIIV--TTRNE-DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLG 321 (1151)
Q Consensus 249 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iiv--Ttr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 321 (1151)
+.++|+||+...|....+-+........ .-..|.. |.+.. ............+.|.||+..+.-.+......
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~- 233 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLG- 233 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC-
Confidence 9999999994333333332222111111 0112322 22222 11111112223899999999999999877652
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCC------CCHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCC
Q 044085 322 RTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGK------YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLP 395 (1151)
Q Consensus 322 ~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~ 395 (1151)
.. .+...+..+.|++|..|+|+-+.-+-..+... .+...|..=..+. .. ....+.+...+..-.+.||
T Consensus 234 ~~----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i-~~-~~~~~~vv~~l~~rl~kL~ 307 (849)
T COG3899 234 CT----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL-GI-LATTDAVVEFLAARLQKLP 307 (849)
T ss_pred Cc----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc-CC-chhhHHHHHHHHHHHhcCC
Confidence 21 12234788999999999999999999888764 2333333322111 11 1111235667888999999
Q ss_pred hhHHHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCcccccc-----cCCC--c-eeeh
Q 044085 396 SHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRS-----KIDA--S-WFLM 467 (1151)
Q Consensus 396 ~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~-----~~~~--~-~~~~ 467 (1151)
...|..+...|++. -.|+.+.|-..|-. .....+....+.|....++-.. .... . +-..
T Consensus 308 ~~t~~Vl~~AA~iG--~~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~ 374 (849)
T COG3899 308 GTTREVLKAAACIG--NRFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFL 374 (849)
T ss_pred HHHHHHHHHHHHhC--ccCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhh
Confidence 99999999999995 44566666665422 2345566666666665555321 1111 1 2367
Q ss_pred hHHHHHHHhh
Q 044085 468 HDLIHDLASW 477 (1151)
Q Consensus 468 H~lv~~~a~~ 477 (1151)
||.|++.|-.
T Consensus 375 H~~vqqaaY~ 384 (849)
T COG3899 375 HDRVQQAAYN 384 (849)
T ss_pred HHHHHHHHhc
Confidence 9999998854
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=4.1e-08 Score=113.43 Aligned_cols=107 Identities=33% Similarity=0.393 Sum_probs=93.0
Q ss_pred cCCCCcccEEEecCccccccCccccCCC-cccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCe
Q 044085 552 IPRLRRLRVLSLCGYWILQLPNDIGELK-HLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRH 630 (1151)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~ 630 (1151)
+..++.+..|++.+|.++.+|.....+. +|++|++++|.+..+|..+..+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 4455789999999999999998888885 999999999999999988999999999999999 88999988889999999
Q ss_pred eecCCCCccccCcccccCccCCCccCeeEe
Q 044085 631 LKNSHSNLFEEMPLRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 631 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 660 (1151)
|++++|. ...+|..++.+..|++|.+..+
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCC
Confidence 9999999 6778877766777777766555
No 50
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=7.3e-06 Score=95.75 Aligned_cols=183 Identities=17% Similarity=0.215 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc-------------------cCCCc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE-------------------HFPDF 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 202 (1151)
+++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-.. .|++
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~D- 89 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVD- 89 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCce-
Confidence 579999999999999987643 234667999999999999998887432111 1111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCC
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPG 278 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 278 (1151)
.+++..+.. ...++..+.+... ..++.-++|||++...+...|..+...+......
T Consensus 90 viEIDAas~--------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 90 YVEMDAASN--------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEEeccccc--------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 122221111 1122222222211 1245568899999877777788888877765567
Q ss_pred cEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh-HHHHHHH
Q 044085 279 SKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL-AAKTLGG 354 (1151)
Q Consensus 279 s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~ 354 (1151)
.++|+||.+ ..+...+....+.+.++.++.++..+.+.+.+-.. ..... .+..+.|++.++|..- |+..+-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-gI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE-RIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 777766665 44444443444589999999999999887765322 22222 3677889999998664 5554333
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.51 E-value=3e-06 Score=84.19 Aligned_cols=183 Identities=26% Similarity=0.279 Sum_probs=101.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
++|||.+.-++.+.-++..... .+..+.-+-.+|++|+||||||+.+++ +....| . +. +.+. .
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~--e~~~~~-~---~~--sg~~-i------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIAN--ELGVNF-K---IT--SGPA-I------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHH--HCT--E-E---EE--ECCC---------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHh--ccCCCe-E---ec--cchh-h-------
Confidence 5799999888876655543211 123567789999999999999999999 444444 1 22 2211 0
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC--------CCC-----------cEEE
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG--------LPG-----------SKII 282 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~--------~~g-----------s~ii 282 (1151)
+...++...+.. + +++-+|.+|++..-+...-+.+..++.++ +++ +-|=
T Consensus 87 ----------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 87 ----------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp -----------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred ----------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 011111111111 2 24557788999776655555555544432 111 2345
Q ss_pred EecCcccccccccCC-CceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhc
Q 044085 283 VTTRNEDVSSMVTTP-SAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLR 357 (1151)
Q Consensus 283 vTtr~~~v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~ 357 (1151)
.|||...+....... ....+++..+.+|-.++..+.+--- .-+--.+.+.+|+++|.|-|--+.-+-+..+
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 688887665554432 2245899999999999998766322 2233358899999999999976665555443
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.4e-06 Score=100.60 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=115.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhcc-------------------CCCc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEH-------------------FPDF 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------f~~~ 202 (1151)
.++||.+.-++.|.+++.... -...+.++|+.|+||||+|+.+++...-... |++
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D- 89 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD- 89 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce-
Confidence 578999999999999987643 2345689999999999999999984321100 100
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEE
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLE-NQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKI 281 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 281 (1151)
.+++..+....+.. .+.|+ ..+. .-..+++-++|+|++...+...+..+...+.......++
T Consensus 90 viEidAas~~kVDd-IReLi----------------e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 90 LIEVDAASRTKVDD-TRELL----------------DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEEeccccccCHHH-HHHHH----------------HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 11111110011111 12222 1111 112467789999999877778888888777765555665
Q ss_pred EEe-cCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 282 IVT-TRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 282 ivT-tr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
|++ |....+...+......|++++++.++..+.+.+.+-.. ..... .+....|++.++|.|--+..+
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~~e---deAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLPFE---AEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 554 44455543333333489999999999999887755322 11222 267888999999988655444
No 53
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=4e-06 Score=92.63 Aligned_cols=182 Identities=13% Similarity=0.187 Sum_probs=118.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh---hhccCCCceEEEEe-CCCCCHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR---VEEHFPDFRAWAYV-SEDFDAVGI 217 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f~~~~~wv~v-s~~~~~~~~ 217 (1151)
++++|.+..++.+.+++..+. -..+..++|+.|+||||+|+.++.... ....+||...|... +.....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 468899999999999996653 345778999999999999999987321 11223365555442 22223333
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc-ccccccC
Q 044085 218 TKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED-VSSMVTT 296 (1151)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~ 296 (1151)
.+++.+.+... -..+++-++|+|++...+...|..+...+.....++.+|++|.+.+ +......
T Consensus 78 ir~~~~~~~~~---------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 78 IRNIIEEVNKK---------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHHhcC---------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 22333322210 0124566777787766677889999988887777888888876543 3222333
Q ss_pred CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 297 PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 297 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
..+.+.+.++++++....+.+...+ .. .+.++.++..++|.|.-+...
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3348999999999998877654311 11 244677889999998655433
No 54
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.46 E-value=2.4e-06 Score=98.30 Aligned_cols=198 Identities=17% Similarity=0.187 Sum_probs=117.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-.........+..+..+ .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 468999999999888776543 23578899999999999999998843211100000000000000 001111
Q ss_pred HHHhc------CCCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCcccc
Q 044085 222 LQAAV------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNEDV 290 (1151)
Q Consensus 222 ~~~~~------~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v 290 (1151)
..... ........+++...+... ..+++-++|+|+++.-+...|..+...+....+.+.+| +||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 10000 000011222222222211 23567799999998777778888887777655566655 45565566
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
........+.+++++++.++....+.+.+..... ... .+....|++.++|.+--+...
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~ie---~eAL~~Ia~~s~GslR~al~~ 229 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-KTD---IEALRIIAYKSEGSARDAVSI 229 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5544433348999999999999999887743321 122 256778999999987554433
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=5e-06 Score=93.57 Aligned_cols=194 Identities=15% Similarity=0.200 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
++++|.+..++.+.+.+.... -...+.++|+.|+||||+|+.+++...-.... . ..++..-...+++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~-~-------~~pc~~c~~c~~~ 82 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGI-T-------SNPCRKCIICKEI 82 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCC-C-------CCCCCCCHHHHHH
Confidence 578999999999999887643 34567899999999999999998843211001 0 0000000011111
Q ss_pred HHHhc------CCCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-cc
Q 044085 222 LQAAV------GSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-ED 289 (1151)
Q Consensus 222 ~~~~~------~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 289 (1151)
..... ........++.. .+.+.+ .+++-++|+|++...+...++.+...+.......++|++|.+ ..
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 11000 000001111111 111111 234569999999766666777787777765556676666644 33
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
+..........+++++++.++..+.+...+..... ... .+.++.|++.++|.|-.+....
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i~---~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DTD---EYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 43333322348999999999999888776533221 122 2677889999999886544443
No 56
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=8.7e-07 Score=102.58 Aligned_cols=196 Identities=18% Similarity=0.174 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
++++|.+...+.|..++.... -...+.++|++|+||||+|+.+++...-...+ ...+|.|.+... +..-...-
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~-~~~cg~C~sc~~-i~~~~h~d 86 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGED-PKPCGECESCLA-VRRGAHPD 86 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCC-CCCCCcChhhHH-HhcCCCCc
Confidence 468999999999999887653 23567899999999999999998854322222 222333221100 00000000
Q ss_pred HHHhcCCCCCcchHHHHHHHHHH-----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-Cccccccccc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQ-----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTT-RNEDVSSMVT 295 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~~ 295 (1151)
+..+.. ......+... .+.+. ..+++-++|+|+++......+..+...+........+|++| +...+...+.
T Consensus 87 v~el~~-~~~~~vd~iR-~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 87 VLEIDA-ASNNSVEDVR-DLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred eEEecc-cccCCHHHHH-HHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 000000 0011112211 12222 22466799999998777777888887777655555555544 4444544443
Q ss_pred CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHH
Q 044085 296 TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAK 350 (1151)
Q Consensus 296 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 350 (1151)
.....+++.++++++..+.+.+.+..... ... .+....|++.++|.+--+.
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 33348999999999999999887643321 222 3678889999999886443
No 57
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=2.4e-07 Score=73.90 Aligned_cols=57 Identities=26% Similarity=0.433 Sum_probs=42.6
Q ss_pred CcccEEEecCccccccC-ccccCCCcccEEEcccccccccc-hhhhcCCCCcEEecccc
Q 044085 556 RRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVLP-ESVSTLYNLQTLILERC 612 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~ 612 (1151)
++|++|++++|.++.+| ..|.++++|++|++++|.|+.+| ..|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45777888888777777 56677788888888887777774 35777777777777776
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.42 E-value=6.2e-06 Score=93.12 Aligned_cols=202 Identities=12% Similarity=0.097 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH--HHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA--VGITK 219 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~--~~~~~ 219 (1151)
++++|++..++.+.+++... ..+.+.++|+.|+||||+|+.+.+... ...+....+.+++++-.+. ..+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 46889999999999988653 234578999999999999999988432 1222122344444321100 00000
Q ss_pred --HHHHHhcC--CCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-cc
Q 044085 220 --VILQAAVG--SVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-ED 289 (1151)
Q Consensus 220 --~i~~~~~~--~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~ 289 (1151)
.....+.. .......+.....+.... .+.+-+||+||+..-....+..+...+......+++|+||.. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 00000000 000011122222222221 134558999999654444455565555444445677777643 33
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
+..........+.+.+++.++..+++.+.+..... ... .+..+.+++.++|.+-.+.....
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~al~~l~~~~~gdlr~l~~~l~ 228 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYD---DDGLELIAYYAGGDLRKAILTLQ 228 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 32323222337889999999999888876543221 222 37788899999998766554433
No 59
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=8.1e-07 Score=84.50 Aligned_cols=117 Identities=18% Similarity=0.162 Sum_probs=78.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhc--cCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHHh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEE--HFPDFRAWAYVSEDFDAVGITKVILQAAVGSVD-VNDLNLLQLQLENQL 245 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~l 245 (1151)
-+++.|+|.+|+|||++++.+.++..... .....++|+.+....+...+.+.|++++..... ..+.+.+...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999999542110 002456799998888999999999999984333 356667777888887
Q ss_pred cCCc-eEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCc
Q 044085 246 KNKK-FLLVLDDMWTE-NYDDWTNLCKPFKAGLPGSKIIVTTRN 287 (1151)
Q Consensus 246 ~~k~-~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~ 287 (1151)
...+ .+||+||+..- +...++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6554 59999999543 3344444543333 456677776654
No 60
>PF13173 AAA_14: AAA domain
Probab=98.40 E-value=8.8e-07 Score=83.31 Aligned_cols=120 Identities=23% Similarity=0.234 Sum_probs=77.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
+++.|.|+.|+||||++++++.+.. .- ...++++..+....... +.+ ..+.+.+...+++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~-~~~~yi~~~~~~~~~~~---------------~~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PP-ENILYINFDDPRDRRLA---------------DPD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---cc-ccceeeccCCHHHHHHh---------------hhh-hHHHHHHhhccCC
Confidence 5899999999999999999998543 11 45667766543221100 000 2233333344578
Q ss_pred eEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccccccc-----ccCCCceeecCCCChhhh
Q 044085 250 FLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSM-----VTTPSAAYSLENLLRDDC 311 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~-----~~~~~~~~~l~~L~~~~~ 311 (1151)
.++++|++. ...+|......+.+..+..+|++|+.+...... .......+++.||+-.|.
T Consensus 63 ~~i~iDEiq--~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQ--YLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhh--hhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 899999994 456788777777766567899999987654422 222222678889887763
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.40 E-value=4e-06 Score=88.46 Aligned_cols=172 Identities=16% Similarity=0.176 Sum_probs=100.7
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 147 REKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
.+..++.+.+++... ....|.|+|+.|+|||+||+.+++... ... ...++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~~~~--~~~-~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACAAAE--ERG-KSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHHHH--hcC-CcEEEEeHHHHHH------hH-----
Confidence 445667777775422 345789999999999999999998432 233 3445555432211 00
Q ss_pred CCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChh-hH-HhhhccccC-CCCCcEEEEecCcccc---------cccc
Q 044085 227 GSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYD-DW-TNLCKPFKA-GLPGSKIIVTTRNEDV---------SSMV 294 (1151)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~-~~-~~l~~~l~~-~~~gs~iivTtr~~~v---------~~~~ 294 (1151)
..+...+.+ .-+||+||+..-... .| +.+...+.. ...+.++|+||+.... ...+
T Consensus 82 ------------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 82 ------------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred ------------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 001111222 348999999643221 23 334443332 1234578888875321 1111
Q ss_pred cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 295 TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 295 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
.... .+.+.++++++...++...+.... .... .+..+.+++.+.|.|..+..+...+
T Consensus 149 ~~~~-~i~l~~l~~~e~~~~l~~~~~~~~-~~~~---~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 149 AWGL-VFQLPPLSDEEKIAALQSRAARRG-LQLP---DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred hcCe-eEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1122 789999999999999877553221 1222 2667888888999998777765443
No 62
>PTZ00202 tuzin; Provisional
Probab=98.40 E-value=5.8e-05 Score=82.06 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=102.8
Q ss_pred cCCCCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHH
Q 044085 137 SLVDEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVG 216 (1151)
Q Consensus 137 ~~~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~ 216 (1151)
.+.+...|+||+++..++...|...+. ...+++.|+|++|+|||||++.+..... + ...+++.. +..+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~vNpr---g~eE 324 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFVDVR---GTED 324 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEECCC---CHHH
Confidence 334567899999999999999975442 2346999999999999999999997322 3 12233322 6799
Q ss_pred HHHHHHHHhcCCCCC---cchHHHHHHHHHHh-c-CCceEEEEeCCCCCCh-hhHHhhhccccCCCCCcEEEEecCcccc
Q 044085 217 ITKVILQAAVGSVDV---NDLNLLQLQLENQL-K-NKKFLLVLDDMWTENY-DDWTNLCKPFKAGLPGSKIIVTTRNEDV 290 (1151)
Q Consensus 217 ~~~~i~~~~~~~~~~---~~~~~~~~~l~~~l-~-~k~~LlVlDdvw~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~v 290 (1151)
+++.++.+++..... +-.+.+.+.+.+.- . +++.+||+-==...+. ..+.+. ..+.....-|.|++---.+.+
T Consensus 325 lLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 325 TLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhc
Confidence 999999999942211 11233344443322 2 6677777653322211 112221 223344455777775554443
Q ss_pred cccccCCC--ceeecCCCChhhhHHHHHHh
Q 044085 291 SSMVTTPS--AAYSLENLLRDDCLSIFVRH 318 (1151)
Q Consensus 291 ~~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 318 (1151)
......-+ ..|.+..++.++|.+...+.
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 22221111 27899999999998876553
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.8e-06 Score=95.01 Aligned_cols=194 Identities=16% Similarity=0.203 Sum_probs=114.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
+++||.+...+.|.+++.... -...+.++|+.|+||||+|+.+++...- ..|+.. ..+..-...+.|
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC-------~~~~~~-~pCg~C~sC~~I 81 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNC-------ETGVTS-TPCEVCATCKAV 81 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCC-------CcCCCC-CCCccCHHHHHH
Confidence 579999999999999997653 2467889999999999999999873211 001100 000000011111
Q ss_pred HHHhc------CCCCCcchHHHHHHHHH----HhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccc
Q 044085 222 LQAAV------GSVDVNDLNLLQLQLEN----QLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDV 290 (1151)
Q Consensus 222 ~~~~~------~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v 290 (1151)
...-. ........++..+.+.. -..+++-++|+|++...+......+...+.....+.++|++|.+ ..+
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 10000 00001112222111111 12356678999999766666777777777665556677766654 333
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
..........+++++++.++..+.+.+.+-... .... .+....|++.++|.+..+..+
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-I~id---~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-IAAD---QDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 322222233899999999999988877653322 1222 267788999999988655544
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.38 E-value=5e-08 Score=97.96 Aligned_cols=109 Identities=25% Similarity=0.227 Sum_probs=79.3
Q ss_pred hcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCe
Q 044085 551 VIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRH 630 (1151)
Q Consensus 551 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~ 630 (1151)
.+...+.|..|||++|.|+.+.+++.-++.+|.|++|+|.|..+-. +..|++|+.|||++| .+..+-..-.+|-+.+.
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 3456677888888888888888888888888888888888887744 788888888888888 55555444456777788
Q ss_pred eecCCCCccccCcccccCccCCCccCeeEeccC
Q 044085 631 LKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKS 663 (1151)
Q Consensus 631 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 663 (1151)
|.++.|.+ ..+ +++++|-+|..|++..+.+.
T Consensus 357 L~La~N~i-E~L-SGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 357 LKLAQNKI-ETL-SGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eehhhhhH-hhh-hhhHhhhhheeccccccchh
Confidence 88887763 333 46777777777776655443
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.4e-06 Score=93.93 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=117.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++...- .+. .. ...+..+.+-..+...+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnc-e~~-~~--~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNC-ENP-IG--NEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCc-ccc-cC--ccccCCCcHHHHHHccC
Confidence 578999999999999987653 2346789999999999999999884321 111 00 00011111111111111
Q ss_pred HHHhc--C---CCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEE-EEecCcccccccc
Q 044085 222 LQAAV--G---SVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKI-IVTTRNEDVSSMV 294 (1151)
Q Consensus 222 ~~~~~--~---~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i-ivTtr~~~v~~~~ 294 (1151)
...+. . ....++..++.+.+... ..++.-++|+|++..-+...++.+...+........+ +.||....+....
T Consensus 89 ~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI 168 (484)
T PRK14956 89 SSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETI 168 (484)
T ss_pred CccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHH
Confidence 00000 0 00111122222222211 2356669999999877778888887777654444554 4566656665555
Q ss_pred cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 295 TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 295 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
....+.|.+++++.++..+.+.+.+...+ .... .+....|++.++|.+.-+..+
T Consensus 169 ~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~e---~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 169 LSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQYD---QEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred HhhhheeeecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCChHHHHHHH
Confidence 44444899999999999888877653322 1222 367888999999998554443
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.7e-06 Score=95.34 Aligned_cols=199 Identities=15% Similarity=0.154 Sum_probs=116.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
+++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-... +..--+. +..+..-...+.|
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p--~~~~g~~-~~PCG~C~sC~~I 87 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGA--DGEGGIT-AQPCGQCRACTEI 87 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCc--cccccCC-CCCCcccHHHHHH
Confidence 579999999999999997653 3356789999999999999999873321000 0000000 0000000111111
Q ss_pred HHHh-----c-CCCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcE-EEEecCcccc
Q 044085 222 LQAA-----V-GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSK-IIVTTRNEDV 290 (1151)
Q Consensus 222 ~~~~-----~-~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~-iivTtr~~~v 290 (1151)
...- . ........++..+.+... ..++.-++|+|++...+...+..+...+..-....+ |++||....+
T Consensus 88 ~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 88 DAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred HcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 1000 0 000011122222222221 135667999999987777788888877766544555 5556655666
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
...+.+..+.+.++.++.++..+.+.+.+-.. ..... .+..+.|++.++|.|..+..+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E-gi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE-GIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 54444444589999999999998887655322 11222 255688999999999755544
No 67
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=5e-07 Score=72.01 Aligned_cols=60 Identities=25% Similarity=0.352 Sum_probs=37.0
Q ss_pred CccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCc
Q 044085 964 NLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNI 1023 (1151)
Q Consensus 964 ~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 1023 (1151)
+|+.|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 456666666655544444566666666666666666655555666666666666666653
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=98.37 E-value=8.7e-06 Score=90.15 Aligned_cols=186 Identities=13% Similarity=0.127 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.++.++.|.+++... ..+.+.++|++|+||||+|+.+++... ...|....+-+..++..... ..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHHHH
Confidence 46889999888888887643 234467999999999999999988431 22331222222333322222 22222
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccccccCCCce
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSSMVTTPSAA 300 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~ 300 (1151)
+......... .-.++.-++++|++..........+...+......+++|+++.. ..+..........
T Consensus 85 i~~~~~~~~~------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 85 IKMFAQKKVT------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHhcccc------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 2221100000 00234669999999776656666666555544456777776644 3332222222237
Q ss_pred eecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHH
Q 044085 301 YSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKT 351 (1151)
Q Consensus 301 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 351 (1151)
++++++++++....+...+-... .... .+....|++.++|..-.+..
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~eg-i~i~---~~~l~~i~~~~~gDlR~aln 199 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEK-VPYV---PEGLEAIIFTADGDMRQALN 199 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 89999999999988887664322 1222 26778899999987644443
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.36 E-value=1.8e-06 Score=94.53 Aligned_cols=135 Identities=27% Similarity=0.426 Sum_probs=98.2
Q ss_pred CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC-ccccccccCCCCCCCcceE
Q 044085 963 SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN-ICKLFFDLGFHNLTSVRDL 1041 (1151)
Q Consensus 963 ~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L 1041 (1151)
.+++.|++++|.+ ..+|. + -++|++|.+++|..+..+|+. .+++|+.|++++|. +..++ .+|+.|
T Consensus 52 ~~l~~L~Is~c~L-~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~--LP~nLe~L~Ls~Cs~L~sLP--------~sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDI-ESLPV-L--PNELTEITIENCNNLTTLPGS--IPEGLEKLTVCHCPEISGLP--------ESVRSL 117 (426)
T ss_pred cCCCEEEeCCCCC-cccCC-C--CCCCcEEEccCCCCcccCCch--hhhhhhheEccCcccccccc--------cccceE
Confidence 5899999999954 44562 2 247999999999988888864 36799999999994 66443 468888
Q ss_pred EeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCC-CCCCeeeEeCCCCCCcCCCCCCCCCcceEeeccCc
Q 044085 1042 FIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNL-TSLERLTLCECPNLISLPKNGLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1042 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l-~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 1115 (1151)
++.+ .....++.+|.+|+.|.+.+++.....+.-..+ ++|++|++++|..+ .+|. ++|.+|+.|+++.+.
T Consensus 118 ~L~~--n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~-~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 118 EIKG--SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPE-KLPESLQSITLHIEQ 188 (426)
T ss_pred EeCC--CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCcc-cccccCcEEEecccc
Confidence 8875 444567889999999998654322111101122 68999999999755 3553 588999999998763
No 70
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=1.3e-05 Score=92.92 Aligned_cols=186 Identities=17% Similarity=0.177 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh-------------------ccCCCc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE-------------------EHFPDF 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 202 (1151)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-. ..|++
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d- 89 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID- 89 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc-
Confidence 478999999999999986543 33567899999999999999998732100 01211
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEE
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKI 281 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 281 (1151)
.+++........+ +...+...+.. -..+++-++|+|++...+...++.+...+......+.+
T Consensus 90 lieidaas~~gvd-----------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 90 LIEIDAASRTGVE-----------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred eEEeecccccCHH-----------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 1222221111111 11112222221 12356779999999776777788888877765555655
Q ss_pred E-EecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh-HHHHHHH
Q 044085 282 I-VTTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL-AAKTLGG 354 (1151)
Q Consensus 282 i-vTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~ 354 (1151)
| +||....+..........+++++++.++....+.+.+-.. ..... .+....|++.++|.+- |+..+-.
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e-gi~~e---~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE-NINSD---EQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5 5665554543333333489999999999887777644322 11222 2667889999999764 4444433
No 71
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.36 E-value=4e-06 Score=100.16 Aligned_cols=173 Identities=21% Similarity=0.273 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccC--CCceEEEEeCCC---CCHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF--PDFRAWAYVSED---FDAVG 216 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~~wv~vs~~---~~~~~ 216 (1151)
++++|++..+..+.+.+... ....+.|+|++|+||||+|+.+++.......+ ....-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 46899999999888877432 33568999999999999999998855332222 122346665431 12222
Q ss_pred HHHHH---------------HHHhcC-------------C----CCCcc-hHHHHHHHHHHhcCCceEEEEeCCCCCChh
Q 044085 217 ITKVI---------------LQAAVG-------------S----VDVND-LNLLQLQLENQLKNKKFLLVLDDMWTENYD 263 (1151)
Q Consensus 217 ~~~~i---------------~~~~~~-------------~----~~~~~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~ 263 (1151)
+...+ +...+. . .+... ....+..+.+.+.++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 111110 0 00111 123577888899999999998888877777
Q ss_pred hHHhhhccccCCCCCcEEEE--ecCccc-ccccccCCCceeecCCCChhhhHHHHHHhhc
Q 044085 264 DWTNLCKPFKAGLPGSKIIV--TTRNED-VSSMVTTPSAAYSLENLLRDDCLSIFVRHSL 320 (1151)
Q Consensus 264 ~~~~l~~~l~~~~~gs~iiv--Ttr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 320 (1151)
.|+.+...+..+.+...|++ ||++.. +..........+.+.+++.+|.++++.+.+-
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 78888877776665555555 666543 2222222222678899999999999988663
No 72
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=5.3e-06 Score=81.01 Aligned_cols=125 Identities=21% Similarity=0.171 Sum_probs=73.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHH
Q 044085 145 YGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQA 224 (1151)
Q Consensus 145 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~ 224 (1151)
+|++..+.++...+... ..+.+.|+|.+|+||||+|+.+++... ..- ..++++...+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~-~~v~~~~~~~~~~~~~~~~~~~~~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPG-APFLYLNASDLLEGLVVAELFGHF 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCC-CCeEEEehhhhhhhhHHHHHhhhh
Confidence 47888888888888653 235788999999999999999999543 111 346666665543322221111100
Q ss_pred hcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC------CCCcEEEEecCccc
Q 044085 225 AVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG------LPGSKIIVTTRNED 289 (1151)
Q Consensus 225 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------~~gs~iivTtr~~~ 289 (1151)
............++-++|+||++.........+...+... ..+..||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999753222223333222222 35778888888654
No 73
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.7e-05 Score=93.50 Aligned_cols=195 Identities=17% Similarity=0.183 Sum_probs=115.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.++||.+..++.|.+.+.... -...+.++|..|+||||+|+.+++...-...+ . ...+..-...+.|
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-~-------~~pCg~C~~C~~i 82 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-T-------ATPCGECDNCREI 82 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-C-------CCCCCCCHHHHHH
Confidence 578999999999999887643 23457899999999999999998743211000 0 0011111111111
Q ss_pred HHHh-------cCC--CCCcchHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCcccc
Q 044085 222 LQAA-------VGS--VDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNEDV 290 (1151)
Q Consensus 222 ~~~~-------~~~--~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v 290 (1151)
...- ... ...++..++.+.+.. -..+++-++|+|++...+......+...+.......++| +||....+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 1100 000 001111112222111 124567799999998777778888887777654555554 45555555
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
...+......+.+++++.++....+.+.+-... .... .+....|++.++|.+-.+..+.
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~e---~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IPFE---PRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 444333344899999999999988877552221 1111 2566789999999887555443
No 74
>PLN03150 hypothetical protein; Provisional
Probab=98.28 E-value=7.5e-07 Score=107.51 Aligned_cols=100 Identities=25% Similarity=0.334 Sum_probs=86.7
Q ss_pred cccEEEecCcccc-ccCccccCCCcccEEEccccccc-ccchhhhcCCCCcEEeccccccccccccccccCCccCeeecC
Q 044085 557 RLRVLSLCGYWIL-QLPNDIGELKHLRYLEFSRTAIE-VLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNS 634 (1151)
Q Consensus 557 ~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 634 (1151)
.++.|+|++|.+. .+|..++++++|++|+|++|.+. .+|..++.+++|++|+|++|.....+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999876 67889999999999999999998 789999999999999999996667899999999999999999
Q ss_pred CCCccccCcccccCc-cCCCccC
Q 044085 635 HSNLFEEMPLRIGKL-TSLRTLA 656 (1151)
Q Consensus 635 ~~~~~~~~p~~i~~L-~~L~~L~ 656 (1151)
+|.+.+.+|..++.+ .++..++
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCcccccCChHHhhccccCceEE
Confidence 999888999887753 2344443
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.27 E-value=1.3e-08 Score=107.27 Aligned_cols=293 Identities=18% Similarity=0.216 Sum_probs=145.4
Q ss_pred CCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCccc
Q 044085 788 PSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKG 867 (1151)
Q Consensus 788 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 867 (1151)
..|+.|.+++|..+..-+.... ....|+++.|.+.+|..+..-. .. .....+++|++|++..|..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~----~~~CpnIehL~l~gc~~iTd~s-~~-------sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTF----ASNCPNIEHLALYGCKKITDSS-LL-------SLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred cccccccccccccCCcchhhHH----hhhCCchhhhhhhcceeccHHH-HH-------HHHHhcchhhhhhhcccchhHH
Confidence 4688999999876554433211 2336788888777776554332 11 1112578888888888887774
Q ss_pred C----CCCCCCCccEEEEccccCccccC-----CCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccC
Q 044085 868 R----LPQRFSSLERVVIRSCEQLLVSY-----TALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLH 938 (1151)
Q Consensus 868 ~----~p~~l~~L~~L~l~~~~~l~~~~-----~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~ 938 (1151)
. +.+.+++|+.|+++.|+.+.... .....++.+...+|..+. ++.+-..-.
T Consensus 206 ~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--------------------le~l~~~~~ 265 (483)
T KOG4341|consen 206 VSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--------------------LEALLKAAA 265 (483)
T ss_pred HHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--------------------HHHHHHHhc
Confidence 2 23466777777777776653311 011112222222222110 000000001
Q ss_pred CCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCc--cccCCCCccceeeecCCCCCccCC--CCCCCCCCcc
Q 044085 939 KLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALP--NGIYNLSSLQHLEIRACPRIASIP--EEVGFPPNIT 1014 (1151)
Q Consensus 939 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~--~~l~~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~ 1014 (1151)
.+. -+..+++.+|...+... ..-..+..|+.|..++|...+..+ ....+.++|+
T Consensus 266 ~~~----------------------~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~ 323 (483)
T KOG4341|consen 266 YCL----------------------EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQ 323 (483)
T ss_pred cCh----------------------HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceE
Confidence 112 23333344443333211 011234555555555554432111 1123455666
Q ss_pred EEEecCCC-ccccccccCCCCCCCcceEEeccCCCC----cccccCCCCCcceEEecCCCCCCcCC------CCCCCCCC
Q 044085 1015 ELHIEGPN-ICKLFFDLGFHNLTSVRDLFIKDGLED----EVSFQKLPNSLVKLNIREFPGLESLS------FVRNLTSL 1083 (1151)
Q Consensus 1015 ~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~L~~L~l~~c~~l~~l~------~l~~l~~L 1083 (1151)
.|-+++|+ +++.....--.+++.|+.+++..|.-. +.++..-.+.|+.|.++.|..+++.. .-.++..|
T Consensus 324 ~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 324 VLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred EEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccc
Confidence 66666665 443322211234555666655553211 12222233456666666666665552 23456678
Q ss_pred CeeeEeCCCCCCcCCCC--CCCCCcceEeeccCchHHHhhhhcCcccccccccCeEEe
Q 044085 1084 ERLTLCECPNLISLPKN--GLPPSLVYVDIYSCPYLEERCKVKGVYWHLVADIPYVRL 1139 (1151)
Q Consensus 1084 ~~L~l~~c~~l~~l~~~--~~~~sL~~L~i~~c~~L~~~~~~~g~~~~~i~~i~~~~~ 1139 (1151)
..|.+++||.+..-.-. ...++|+.+++.+|...++--- -+...|.|++.+
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i-----~~~~~~lp~i~v 456 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI-----SRFATHLPNIKV 456 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh-----HHHHhhCcccee
Confidence 88888888776543222 2346788888888877665321 134567777655
No 76
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=4.5e-06 Score=92.75 Aligned_cols=197 Identities=15% Similarity=0.097 Sum_probs=115.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCc--eE-EEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDF--RA-WAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~--~~-wv~vs~~~~~~~~~ 218 (1151)
.+++|.+...+.|.+.+.... -...+.++|+.|+||+|+|..+.+..--....... .. -.+.. ....-...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c 92 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVA 92 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHH
Confidence 578999999999999987754 24578899999999999998887732111100000 00 00000 00000111
Q ss_pred HHHHHHhcCC---------C------CCcchHHHHHHHHHHhc-----CCceEEEEeCCCCCChhhHHhhhccccCCCCC
Q 044085 219 KVILQAAVGS---------V------DVNDLNLLQLQLENQLK-----NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPG 278 (1151)
Q Consensus 219 ~~i~~~~~~~---------~------~~~~~~~~~~~l~~~l~-----~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 278 (1151)
+.|...--.+ . ..-..++ .+.+.+.+. +++-++|+||+...+......+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111100000 0 0011222 223333332 56679999999877778888888777765556
Q ss_pred cEEEEecCcc-cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 279 SKIIVTTRNE-DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 279 s~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
+.+|++|... .+........+.+.+.+++.++..+++...... ..+ +....+++.++|.|..+..+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 6666666654 443333344458999999999999999775311 111 223678999999998765553
No 77
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=3.1e-05 Score=85.58 Aligned_cols=197 Identities=16% Similarity=0.170 Sum_probs=119.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc--cCCCceEEEEeCCCCCHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE--HFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
-+.++|.++..+.+...+..+. ....+.|+|+.|+||||+|..+.+..--.. .+ ... ....++......
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~-~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAE-APE---TLADPDPASPVW 92 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCcccc-Ccc---ccCCCCCCCHHH
Confidence 3578999999999999997653 345788999999999999999888432100 01 100 001111111223
Q ss_pred HHHHHH-------hcCCC--------CCcchHHHHHHHHHHhc-----CCceEEEEeCCCCCChhhHHhhhccccCCCCC
Q 044085 219 KVILQA-------AVGSV--------DVNDLNLLQLQLENQLK-----NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPG 278 (1151)
Q Consensus 219 ~~i~~~-------~~~~~--------~~~~~~~~~~~l~~~l~-----~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 278 (1151)
+.+... +.... ..-..++. +.+.+++. +++-++|+|++...+......+...+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 333222 10000 00112322 23444432 56779999999877777777787777654444
Q ss_pred cE-EEEecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 279 SK-IIVTTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 279 s~-iivTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
.. |++|++...+.....+..+.+.+.+++.++..+++.+..... .. ..+.+..|++.++|.|..+..+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~~---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---GS---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 55 455555544544443334489999999999999998743211 11 12557789999999998766554
No 78
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.25 E-value=2.2e-05 Score=94.70 Aligned_cols=173 Identities=21% Similarity=0.307 Sum_probs=100.0
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKE---ALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
++++|.+..+. .+.+.+... ....+.++|++|+||||+|+.+++. ...+| +.++......+-.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f------~~lna~~~~i~di 93 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH--TRAHF------SSLNAVLAGVKDL 93 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH--hcCcc------eeehhhhhhhHHH
Confidence 46889887664 455666443 3456789999999999999999984 33444 1121110000001
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHh--cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE--ecCcc--cccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQL--KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV--TTRNE--DVSS 292 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~--~v~~ 292 (1151)
+++ .......+ .+++.++|+||++.-+...++.+...+. .|+.+++ ||.+. .+..
T Consensus 94 r~~----------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 94 RAE----------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNK 154 (725)
T ss_pred HHH----------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhh
Confidence 111 11111112 2467899999997766666766665443 3555555 34443 1222
Q ss_pred cccCCCceeecCCCChhhhHHHHHHhhcC------CCCCCCCchHHHHHHHHHHHcCCChhHHH
Q 044085 293 MVTTPSAAYSLENLLRDDCLSIFVRHSLG------RTDFSAHQYLSEIGEKIVDKCNGSPLAAK 350 (1151)
Q Consensus 293 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 350 (1151)
........+.+++++.++...++.+.+-. ....... .+....|++.+.|.--.+.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~---deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLE---PEAEKHLVDVANGDARSLL 215 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCC---HHHHHHHHHhCCCCHHHHH
Confidence 22222237999999999999998876531 1111122 3667888888888654333
No 79
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=4.4e-05 Score=84.69 Aligned_cols=207 Identities=16% Similarity=0.135 Sum_probs=130.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCc-eEEEEeCCCCCHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDF-RAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~~wv~vs~~~~~~~~~~~ 220 (1151)
..+.+|+++.+++...|...-. +..+.-+.|+|..|+|||+.++.+... +....+.. .++|++-...+..+++..
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 3488999999999988765542 223334899999999999999999994 44443344 789999999999999999
Q ss_pred HHHHhc-CCCCCcchHHHHHHHHHHhc--CCceEEEEeCCCCCChhhHHhhhccccCCCC-CcEEE--EecCcccccccc
Q 044085 221 ILQAAV-GSVDVNDLNLLQLQLENQLK--NKKFLLVLDDMWTENYDDWTNLCKPFKAGLP-GSKII--VTTRNEDVSSMV 294 (1151)
Q Consensus 221 i~~~~~-~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~-gs~ii--vTtr~~~v~~~~ 294 (1151)
|+.+++ .+.......+....+.+.+. ++.+++|||++..-....-+.+...+..... .++|+ ..+-+......+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999997 33334555666667777765 5789999999943211111233333333322 35443 333332222221
Q ss_pred c----C--CCceeecCCCChhhhHHHHHHhhcCC-CCCCCCchHHHHHHHHHHHcC-CChhHHHHH
Q 044085 295 T----T--PSAAYSLENLLRDDCLSIFVRHSLGR-TDFSAHQYLSEIGEKIVDKCN-GSPLAAKTL 352 (1151)
Q Consensus 295 ~----~--~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~-g~Plai~~~ 352 (1151)
. . .+..+...+-+.+|-.+.+..++-.. ......++..+.+..++..-+ ---.||..+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1 1 11257888999999999998877432 122233444454555555555 444555554
No 80
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.24 E-value=3.6e-05 Score=86.13 Aligned_cols=184 Identities=14% Similarity=0.160 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEe--CCCCCHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYV--SEDFDAVGITK 219 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~v--s~~~~~~~~~~ 219 (1151)
.+++|+++.++.+..++.... .+.+.++|..|+||||+|+.+++... ...+ . ..++.+ +...... ..+
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~-~-~~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALARELY-GEDW-R-ENFLELNASDERGID-VIR 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHc-CCcc-c-cceEEeccccccchH-HHH
Confidence 468899999999999996532 33579999999999999999988431 1122 1 122332 2221111 112
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccccccCCC
Q 044085 220 VILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSSMVTTPS 298 (1151)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~ 298 (1151)
..+.++..... .-...+-++++|++..-....+..+...+......+++|+++.. ..+........
T Consensus 87 ~~i~~~~~~~~-------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 87 NKIKEFARTAP-------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHHHhcCC-------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 22211110000 00123568999998654444556666665554556677776643 22222222222
Q ss_pred ceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 299 AAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 299 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
..+++.++++++....+.+.+.... ..-. .+....+++.++|.+.-+...
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~-~~i~---~~al~~l~~~~~gd~r~~~~~ 203 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEG-IEIT---DDALEAIYYVSEGDMRKAINA 203 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2789999999999888887664322 1222 367888999999987664443
No 81
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.23 E-value=6e-06 Score=88.73 Aligned_cols=289 Identities=18% Similarity=0.204 Sum_probs=177.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
..+-+.++|.|||||||++-.+.. +...|++.+.++....--|...+.-.....++-.. .+-+.....+..+..+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~--~~g~~~~~~~~~~~~~ 87 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV--QPGDSAVDTLVRRIGD 87 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc--ccchHHHHHHHHHHhh
Confidence 457899999999999999999887 45678677777777665565555555555455111 1122334466777788
Q ss_pred CceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcccccccccCCCceeecCCCChh-hhHHHHHHhhcCCC-CC
Q 044085 248 KKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSMVTTPSAAYSLENLLRD-DCLSIFVRHSLGRT-DF 325 (1151)
Q Consensus 248 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~-~~ 325 (1151)
+|.++|+||...- .+.-..+...+..+...-.|+.|+|...... ... .+.+..|+.. ++.++|.-.+.... ..
T Consensus 88 rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~~---ge~-~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 88 RRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILVA---GEV-HRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhccc---ccc-cccCCccccCCchhHHHHHHHHHhccce
Confidence 9999999998321 1122233444455555667888998654322 122 6677777766 68888876653211 11
Q ss_pred CCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcccCCC-------ChhhHHHHHHHhhcCCChhH
Q 044085 326 SAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLNSKIWDLDE-------DKSGIMRALRVSYYYLPSHV 398 (1151)
Q Consensus 326 ~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~-------~~~~i~~~l~~sy~~L~~~~ 398 (1151)
.-...-.....+|.++.+|.|++|...+...++- ...+-...++.....+.+ ......+.+.+||.-|..-.
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe 241 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWE 241 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHH
Confidence 1122234788899999999999999999988765 344444444332211111 12456778999999999999
Q ss_pred HHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCcccccccC-CCceeehhHHHHHHHh
Q 044085 399 KRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRSKI-DASWFLMHDLIHDLAS 476 (1151)
Q Consensus 399 k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~-~~~~~~~H~lv~~~a~ 476 (1151)
+.-|.-++.|...+.-. ...|.+-|-... ...-..-.-+..+++.++.-.... ....|+.-+=++.|+.
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999998776644 344555442210 011223334567788777754321 2233444444444443
No 82
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.23 E-value=6.8e-07 Score=103.30 Aligned_cols=124 Identities=27% Similarity=0.336 Sum_probs=98.3
Q ss_pred CCCCccEEEccCCCCcccccchhhhhhhhcCCCC-cccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcC
Q 044085 523 EVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLR-RLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTL 601 (1151)
Q Consensus 523 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L 601 (1151)
....+..|.+..... ...+.....++ +|+.|++++|.+..+|..+..+++|+.|++++|+++.+|...+.+
T Consensus 114 ~~~~l~~L~l~~n~i--------~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 114 ELTNLTSLDLDNNNI--------TDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred cccceeEEecCCccc--------ccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 335566666654431 12233344453 899999999999999988999999999999999999999988899
Q ss_pred CCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCCccC
Q 044085 602 YNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLA 656 (1151)
Q Consensus 602 ~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 656 (1151)
++|+.|++++| .+..+|..+..+..|+.|.+++|. ....+..+.++.++..|.
T Consensus 186 ~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 186 SNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccc
Confidence 99999999999 899999988788889999999996 345556666666666554
No 83
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=1.8e-05 Score=91.72 Aligned_cols=195 Identities=15% Similarity=0.187 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|++..++.+.+++.... -...+.++|+.|+||||+|+.+++... |.-|.... .+..-...+.+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~-------C~~~~~~~-~Cg~C~sCr~i 82 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN-------CLNPKDGD-CCNSCSVCESI 82 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc-------CCCCCCCC-CCcccHHHHHH
Confidence 578999999999999986643 235788999999999999999987321 11121111 11111111111
Q ss_pred HHHhc------CCCCCcchHHH---HHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCcccc
Q 044085 222 LQAAV------GSVDVNDLNLL---QLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV-TTRNEDV 290 (1151)
Q Consensus 222 ~~~~~------~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v 290 (1151)
..... ........++. ...+... ..+++-++|+|++...+...+..+...+......+.+|+ |+....+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 11100 00000111111 1111110 123444799999976666777888777765544555554 5444444
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh-HHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL-AAKTLG 353 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 353 (1151)
........+.+++.++++++....+...+.... .... .+.+..+++.++|.+- |+..+-
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEK-IKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 433333334899999999999988877653322 1122 2667889999999765 444433
No 84
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=3.2e-06 Score=86.16 Aligned_cols=50 Identities=28% Similarity=0.405 Sum_probs=33.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV 195 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 195 (1151)
.||||+++.+++...+. .. .....+.+.|+|.+|+|||+|+++++.....
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999996 22 2245689999999999999999999985543
No 85
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.21 E-value=2.9e-06 Score=91.84 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=60.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC--CHHHHHHHHHHHhc-CCCCCcchHHH------HHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF--DAVGITKVILQAAV-GSVDVNDLNLL------QLQ 240 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~--~~~~~~~~i~~~~~-~~~~~~~~~~~------~~~ 240 (1151)
.-..|+|++|+||||||+++|++.... +| +..+||.+++.+ ++.++++.+...+. ...+....... ...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hF-Dv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HP-EVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cC-CeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999976554 78 999999999887 77888888874433 22222211111 111
Q ss_pred HHHH-hcCCceEEEEeCC
Q 044085 241 LENQ-LKNKKFLLVLDDM 257 (1151)
Q Consensus 241 l~~~-l~~k~~LlVlDdv 257 (1151)
-+.. ..+++.+|++|++
T Consensus 248 Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSI 265 (416)
T ss_pred HHHHHHcCCCEEEEEECh
Confidence 1111 3689999999999
No 86
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=3e-05 Score=88.60 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=114.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh------------------hh-ccCCCc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR------------------VE-EHFPDF 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------------------~~-~~f~~~ 202 (1151)
.++||.+..++.|.+.+..+. -...+.++|+.|+||||+|+.++.... +. ..+ .-
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~-~D 86 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNH-PD 86 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCC-CC
Confidence 578999999998888886543 234788999999999999999876210 00 111 11
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII 282 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 282 (1151)
++.+..+....+++ .+++++.... .-..+++=++|+|++..-+....+.+...+....+.+++|
T Consensus 87 v~eidaas~~~vdd-IR~Iie~~~~---------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 87 VIEIDAASNTSVDD-IKVILENSCY---------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEEecccCCCHHH-HHHHHHHHHh---------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 23333332222222 2222222110 0012456689999997666667777877777655666666
Q ss_pred Eec-CcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHH
Q 044085 283 VTT-RNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKT 351 (1151)
Q Consensus 283 vTt-r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 351 (1151)
++| ....+...+....+.+++++++.++..+.+.+.+..... ... .+....|++.++|.+-.+..
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~---~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHD---EESLKLIAENSSGSMRNALF 216 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 554 445555444433448999999999999888876643221 222 26678899999998764433
No 87
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.20 E-value=1.1e-05 Score=82.56 Aligned_cols=187 Identities=15% Similarity=0.149 Sum_probs=120.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
-++++|.+..+..|.+.+... ..++...+|++|.|||+-|..++...--..-|+..+.-.++|...... +.+.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~ 107 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE 107 (346)
T ss_pred HHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh
Confidence 357899999999999988763 456889999999999999999888544345675554445555443222 1110
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHh--cCCc-eEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCcccccccccC
Q 044085 221 ILQAAVGSVDVNDLNLLQLQLENQL--KNKK-FLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNEDVSSMVTT 296 (1151)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v~~~~~~ 296 (1151)
...+...+........ ..++ =.||||++.....+.|.++...+......++.| ||+--..+......
T Consensus 108 ---------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~S 178 (346)
T KOG0989|consen 108 ---------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVS 178 (346)
T ss_pred ---------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHh
Confidence 0111111111111001 1233 478899998888899999998888866667754 45444444444444
Q ss_pred CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh
Q 044085 297 PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL 347 (1151)
Q Consensus 297 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 347 (1151)
..+.+..++|.+++...-++.-+-.++- ..+ .+..+.|++.++|-=-
T Consensus 179 RC~KfrFk~L~d~~iv~rL~~Ia~~E~v-~~d---~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 179 RCQKFRFKKLKDEDIVDRLEKIASKEGV-DID---DDALKLIAKISDGDLR 225 (346)
T ss_pred hHHHhcCCCcchHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCcHH
Confidence 4447999999999998888776643322 222 2677889999988543
No 88
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=3.2e-05 Score=90.55 Aligned_cols=182 Identities=18% Similarity=0.204 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc-------------------cCCCc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE-------------------HFPDF 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 202 (1151)
+++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.. .|++
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~D- 89 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVD- 89 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccc-
Confidence 579999999999999997653 235788999999999999999987321110 0101
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH----HhcCCceEEEEeCCCCCChhhHHhhhccccCCCCC
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLEN----QLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPG 278 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 278 (1151)
.+.+..+... ..+.+.+.+.. -..+++-++|+|++...+......+...+......
T Consensus 90 vlEidaAs~~--------------------gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 90 LLEIDAASNT--------------------GIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred eEEEeccccC--------------------CHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 1111111111 11222121111 01256678999999765555566677666654445
Q ss_pred cEEEEecC-cccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 279 SKIIVTTR-NEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 279 s~iivTtr-~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
.++|++|. ...+.....+....+.++.++.++....+.+.+-... .... .+....|++.++|.+.-+..+-
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i~id---~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-IAYE---PPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-CCcC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 66666554 3444333222223788999999999988877654322 2222 2677889999999885554443
No 89
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.20 E-value=4.3e-06 Score=87.28 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=62.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC--CCHHHHHHHHHHHhc-CCCCCcchH------HHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED--FDAVGITKVILQAAV-GSVDVNDLN------LLQLQ 240 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~--~~~~~~~~~i~~~~~-~~~~~~~~~------~~~~~ 240 (1151)
..++|+|++|+|||||++.+|++.... +| +..+|+.+++. +++.++++.+...+. ...+..... .....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~f-dv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HP-EVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cC-CeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 478999999999999999999976544 88 89999998876 789999999855444 222221111 11222
Q ss_pred HHHH-hcCCceEEEEeCCC
Q 044085 241 LENQ-LKNKKFLLVLDDMW 258 (1151)
Q Consensus 241 l~~~-l~~k~~LlVlDdvw 258 (1151)
.+.. -.+++.++++|++-
T Consensus 95 a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 95 AKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHCCCCEEEEEECHH
Confidence 2222 34899999999993
No 90
>PRK08727 hypothetical protein; Validated
Probab=98.19 E-value=2.8e-05 Score=81.49 Aligned_cols=151 Identities=16% Similarity=0.117 Sum_probs=90.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
..+.|+|..|+|||+||+.+++. ..... ..+.|+.+.+ ....+. ..+ +.+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~-~~~~y~~~~~------~~~~~~----------------~~~-~~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAG-RSSAYLPLQA------AAGRLR----------------DAL-EAL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcC-CcEEEEeHHH------hhhhHH----------------HHH-HHH-hcC
Confidence 45999999999999999999984 33333 3456665432 111111 011 111 133
Q ss_pred eEEEEeCCCCCC-hhhHHh-hhccccC-CCCCcEEEEecCcc---------cccccccCCCceeecCCCChhhhHHHHHH
Q 044085 250 FLLVLDDMWTEN-YDDWTN-LCKPFKA-GLPGSKIIVTTRNE---------DVSSMVTTPSAAYSLENLLRDDCLSIFVR 317 (1151)
Q Consensus 250 ~LlVlDdvw~~~-~~~~~~-l~~~l~~-~~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~ 317 (1151)
-+||+||+.... ...|.. +...+.. ...|..||+|++.. ++...+.... .+++++++.++-.+++.+
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~-~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCI-RIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCc-eEEecCCCHHHHHHHHHH
Confidence 599999995321 123432 3322221 12466799999853 1122221222 889999999999999998
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 318 HSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
++.... ...+ .++...|++.++|-.-++..+
T Consensus 174 ~a~~~~-l~l~---~e~~~~La~~~~rd~r~~l~~ 204 (233)
T PRK08727 174 RAQRRG-LALD---EAAIDWLLTHGERELAGLVAL 204 (233)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhCCCCHHHHHHH
Confidence 775422 2222 377888999998776655433
No 91
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=3.5e-05 Score=83.58 Aligned_cols=215 Identities=17% Similarity=0.130 Sum_probs=131.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 139 VDEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 139 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++.++||+.++..+.+|+...-+ ....+.+-|.|-+|.|||.+...++.+......= -.++++.+..--....++
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHH
Confidence 3467899999999999999987653 3455678999999999999999999965422111 145677766556678888
Q ss_pred HHHHHHhc-CCCCCcchHHHHHHHHHHhcCC--ceEEEEeCCCCCChhhHHhhhccccCCC-CCcEEEEec---------
Q 044085 219 KVILQAAV-GSVDVNDLNLLQLQLENQLKNK--KFLLVLDDMWTENYDDWTNLCKPFKAGL-PGSKIIVTT--------- 285 (1151)
Q Consensus 219 ~~i~~~~~-~~~~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~~~-~gs~iivTt--------- 285 (1151)
..|...+. .........+.++.+.++..+. .+|+|+|.++.-....-+.+...|.|.. +++|+|+.-
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 88888874 1111112245556666666543 5899999984321122233455555543 567765432
Q ss_pred Ccc-cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCC-CCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 286 RNE-DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFS-AHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 286 r~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
|.- .+-....-.++.+..++.+.++..++|..+.-...... .++.++-.|++++.-.|.+--|+-+.-+.+
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 211 11111222334889999999999999999874433211 112333334444444444555555554444
No 92
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.7e-05 Score=88.50 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=116.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhcc--CC----------------Cce
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEH--FP----------------DFR 203 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--f~----------------~~~ 203 (1151)
+++||.+...+.|...+..+. -...+.++|++|+||||+|+.+++....... +. ...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999988888888876543 2356789999999999999999874321100 00 011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE
Q 044085 204 AWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII 282 (1151)
Q Consensus 204 ~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 282 (1151)
..+..+......++ +.+.+. ... -..+++-++|+|++..-.....+.+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~----------------~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDA----------------VGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHH----------------HhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 12222111111111 111111 110 122456799999996544455566666665543344444
Q ss_pred -EecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC-hhHHHHHHHHhcC--
Q 044085 283 -VTTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS-PLAAKTLGGLLRG-- 358 (1151)
Q Consensus 283 -vTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~~~L~~-- 358 (1151)
+||....+..........+.++++++++....+.+.+.... .... .+....|++.++|. +.|+..+-.+...
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~i~---~eal~~Ia~~s~GdlR~aln~Le~l~~~~~ 227 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IEID---REALSFIAKRASGGLRDALTMLEQVWKFSE 227 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 45543455444443344899999999999888887664322 1222 26778889888654 6677666554321
Q ss_pred -CCCHHHHHHHHh
Q 044085 359 -KYDPKDWEDVLN 370 (1151)
Q Consensus 359 -~~~~~~w~~~~~ 370 (1151)
+-+.+...+++.
T Consensus 228 ~~It~e~V~~~l~ 240 (472)
T PRK14962 228 GKITLETVHEALG 240 (472)
T ss_pred CCCCHHHHHHHHc
Confidence 234555555543
No 93
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.18 E-value=3.3e-05 Score=81.10 Aligned_cols=155 Identities=12% Similarity=0.155 Sum_probs=92.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
+.+.|+|+.|+|||+||+.+++... ..- ..+.++.+..... ...+ +.+.+.. -
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~-~~v~y~~~~~~~~-------------------~~~~----~~~~~~~-~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--QRG-RAVGYVPLDKRAW-------------------FVPE----VLEGMEQ-L 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCC-CeEEEEEHHHHhh-------------------hhHH----HHHHhhh-C
Confidence 4789999999999999999998432 222 3456666543100 0001 1111111 2
Q ss_pred eEEEEeCCCCCC-hhhHHh-hhccccCC-CCC-cEEEEecCcc---------cccccccCCCceeecCCCChhhhHHHHH
Q 044085 250 FLLVLDDMWTEN-YDDWTN-LCKPFKAG-LPG-SKIIVTTRNE---------DVSSMVTTPSAAYSLENLLRDDCLSIFV 316 (1151)
Q Consensus 250 ~LlVlDdvw~~~-~~~~~~-l~~~l~~~-~~g-s~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~~lf~ 316 (1151)
-++++||+.... ...|+. +...+... ..| .++|+||+.. ++...+.... +++++++++++-.+++.
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~-~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQ-IYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCc-eeeecCCCHHHHHHHHH
Confidence 488999994321 134543 22222221 123 4789999854 2223333334 89999999999999988
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 317 RHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+++... ....+ +++..-|++.+.|..-++..+-..+
T Consensus 178 ~~a~~~-~~~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 178 LRARLR-GFELP---EDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHc-CCCCC---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 766432 22222 3788889999998776666555444
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=3.5e-05 Score=90.69 Aligned_cols=198 Identities=16% Similarity=0.179 Sum_probs=113.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCC-CceEEEEeCCCCCHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFP-DFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~~wv~vs~~~~~~~~~~~ 220 (1151)
+++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-..... ..... ..+..-..-+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 578999999999999987653 335678999999999999999966321100000 00000 00111111111
Q ss_pred HHHHhc------CCCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCccc
Q 044085 221 ILQAAV------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNED 289 (1151)
Q Consensus 221 i~~~~~------~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~ 289 (1151)
|...-. ........++..+.+... ..++.-++|+|+|...+...+..+...+.......++| +||....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 100000 000011122222222111 12445589999998777778888887776654555655 4555444
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
+..........++++.+++++..+.+.+.+-..+ .... .+....|++.++|.+--+..+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-VPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4433333334899999999999888877653322 1222 267788999999988655554
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.6e-05 Score=88.84 Aligned_cols=199 Identities=15% Similarity=0.203 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEE-eCCCCCHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAY-VSEDFDAVGITKV 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~-vs~~~~~~~~~~~ 220 (1151)
.+++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-...+ ....|.. +...+..-..-+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~-~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMI-DDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCc-CcccccccCCCCCCCCHHHHH
Confidence 578999999999999887643 23467899999999999999998743211111 1111110 0011111111111
Q ss_pred HHHHhc------CCCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-Ccc
Q 044085 221 ILQAAV------GSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTT-RNE 288 (1151)
Q Consensus 221 i~~~~~------~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~ 288 (1151)
+..... ........+++.+ +.+.+ .+++-++|+|++...+...++.+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 111100 0001111222222 22222 2456688999997666667888887777665666766554 444
Q ss_pred cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHH
Q 044085 289 DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKT 351 (1151)
Q Consensus 289 ~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 351 (1151)
.+..........++++++++++....+...+-... .... .+.+..|++.++|.+--+..
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~---~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVD---ADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 44433222223789999999999888777653221 1122 37788999999998754444
No 96
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.4e-05 Score=85.66 Aligned_cols=185 Identities=15% Similarity=0.170 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCeEEEEEecCCCccHHHHHHHHhhchhhh------------------ccC
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN----SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE------------------EHF 199 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~f 199 (1151)
++++|.+..++.|.+++...... +..-...+.++|+.|+|||++|+.+++...-. ..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 46889999999999999765310 01124568899999999999999987632100 011
Q ss_pred CCceEEEEeCC-CCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHhhhccccCCCC
Q 044085 200 PDFRAWAYVSE-DFDAVGITKVILQAAVGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLP 277 (1151)
Q Consensus 200 ~~~~~wv~vs~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 277 (1151)
|| ..++.... ...+.+ .+++.+. +.. -..+++-++++|++...+......+...+....+
T Consensus 85 pD-~~~i~~~~~~i~i~~-iR~l~~~----------------~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVDE-VRELVTI----------------AARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CC-EEEeccccccCCHHH-HHHHHHH----------------HHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 11 11121111 011111 1111111 111 0124555888899977766677777777766555
Q ss_pred CcEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 278 GSKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 278 gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
+..+|++|.+ ..+...+....+.+.+.+++.++..+.+.+.. + .. .+.+..++..++|.|..+..+.
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 6665555544 45554444444589999999999998886432 1 11 2567889999999997655443
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.16 E-value=3.9e-05 Score=77.93 Aligned_cols=92 Identities=18% Similarity=0.277 Sum_probs=65.0
Q ss_pred CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcc-cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCC
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNE-DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDF 325 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 325 (1151)
+.+-++|+||+...+...++.+...+....+.+.+|++|++. .+..........+.+.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456789999997666667777877777655566677666543 333333333348999999999998888776 2
Q ss_pred CCCchHHHHHHHHHHHcCCChhH
Q 044085 326 SAHQYLSEIGEKIVDKCNGSPLA 348 (1151)
Q Consensus 326 ~~~~~~~~~~~~i~~~c~g~Pla 348 (1151)
.. .+.+..|++.++|.|..
T Consensus 169 -i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC---HHHHHHHHHHcCCCccc
Confidence 11 26788999999998854
No 98
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.3e-05 Score=89.88 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh-------------------ccCCCc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE-------------------EHFPDF 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~f~~~ 202 (1151)
+++||.+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-. +.|+|
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d- 89 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD- 89 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce-
Confidence 579999999999999997653 23467899999999999999998733111 11111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII 282 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 282 (1151)
.+.+..+....++++ ++++..+. ..-..++.-++|+|+|...+......+...+......+++|
T Consensus 90 ~~eidaas~~~v~~i-R~l~~~~~---------------~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 90 LFEVDAASRTKVEDT-RELLDNIP---------------YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEEcccccCCHHHH-HHHHHHHh---------------hccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 122222211112211 22222111 00113556689999997766677777777776655566655
Q ss_pred E-ecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 283 V-TTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 283 v-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
+ ||....+..........+++++++.++....+.+.+-..+ .... .+....|++.++|.+.-+..+-
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i~~~---~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-VEFE---NAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 5 5544444433333333789999999988776665543221 1222 2567789999999886554443
No 99
>PRK09087 hypothetical protein; Validated
Probab=98.14 E-value=2.8e-05 Score=80.60 Aligned_cols=144 Identities=17% Similarity=0.184 Sum_probs=87.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
+.+.|+|+.|+|||+|++.+++... ..+++.. .+..+++..+ . .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~------~~~~~~~~~~--------------------~--~ 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPN------EIGSDAANAA--------------------A--E 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHH------HcchHHHHhh--------------------h--c
Confidence 5689999999999999999887421 1233221 1111111111 1 1
Q ss_pred eEEEEeCCCCC--ChhhHHhhhccccCCCCCcEEEEecCc---------ccccccccCCCceeecCCCChhhhHHHHHHh
Q 044085 250 FLLVLDDMWTE--NYDDWTNLCKPFKAGLPGSKIIVTTRN---------EDVSSMVTTPSAAYSLENLLRDDCLSIFVRH 318 (1151)
Q Consensus 250 ~LlVlDdvw~~--~~~~~~~l~~~l~~~~~gs~iivTtr~---------~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 318 (1151)
-++++||+... +...+-.+...+.. .|..||+|++. +++...+.... +++++++++++-.+++.+.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl-~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT-VVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCc-eeecCCCCHHHHHHHHHHH
Confidence 37888999432 22222222222222 36678888874 23333333334 8999999999999999988
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 319 SLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+... ....+ +++..-|++++.|..-++..+-..|
T Consensus 166 ~~~~-~~~l~---~ev~~~La~~~~r~~~~l~~~l~~L 199 (226)
T PRK09087 166 FADR-QLYVD---PHVVYYLVSRMERSLFAAQTIVDRL 199 (226)
T ss_pred HHHc-CCCCC---HHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 7432 22222 3788889999998887776544444
No 100
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.14 E-value=4.2e-07 Score=99.81 Aligned_cols=112 Identities=26% Similarity=0.336 Sum_probs=98.5
Q ss_pred hhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCcc
Q 044085 549 FHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNL 628 (1151)
Q Consensus 549 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L 628 (1151)
+..+..++ |++|.+++|+++.+|..++.+.+|..||.+.|.|..+|+.++.|..|+.|.++.| .+..+|..+..| .|
T Consensus 137 p~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~~L-pL 213 (722)
T KOG0532|consen 137 PDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSL-PL 213 (722)
T ss_pred ChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCC-ce
Confidence 33344554 8999999999999999999999999999999999999999999999999999999 788899988855 58
Q ss_pred CeeecCCCCccccCcccccCccCCCccCeeEeccCC
Q 044085 629 RHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSN 664 (1151)
Q Consensus 629 ~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~ 664 (1151)
..||++.|+ ...+|-.|.+|+.||+|.+..|...+
T Consensus 214 i~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 214 IRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred eeeecccCc-eeecchhhhhhhhheeeeeccCCCCC
Confidence 999999998 67899999999999999888776554
No 101
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=4.9e-07 Score=93.75 Aligned_cols=90 Identities=21% Similarity=0.160 Sum_probs=59.5
Q ss_pred hhhcCCCCcccEEEecCcccc-----ccCccccCCCcccEEEccccc----ccccch-------hhhcCCCCcEEecccc
Q 044085 549 FHVIPRLRRLRVLSLCGYWIL-----QLPNDIGELKHLRYLEFSRTA----IEVLPE-------SVSTLYNLQTLILERC 612 (1151)
Q Consensus 549 ~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~Ls~n~----i~~lp~-------~i~~L~~L~~L~L~~~ 612 (1151)
...+..+..+..|+|++|.+. .+.+.+.+.++||.-++|+-. ...+|+ .+-++++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 344566778888888888765 244566677788888888522 224443 3456678888888888
Q ss_pred cccccccc----ccccCCccCeeecCCCCc
Q 044085 613 YRLKKLFP----DIGNLTNLRHLKNSHSNL 638 (1151)
Q Consensus 613 ~~l~~lp~----~~~~L~~L~~L~l~~~~~ 638 (1151)
-.-..-++ -+.+++.|+||.|.+|.+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 43222222 256788888888888874
No 102
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=0.00025 Score=82.89 Aligned_cols=197 Identities=14% Similarity=0.182 Sum_probs=114.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+...-.... .. ..++.-...+.|
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~-~~-------~pCg~C~sC~~i 82 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAP-TG-------EPCNTCEQCRKV 82 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCC-CC-------CCCcccHHHHHH
Confidence 468999998888998886543 23577899999999999999998843211000 00 011111111111
Q ss_pred HHHhc------CCCCCcchHHHHHHHHHH-----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-Cccc
Q 044085 222 LQAAV------GSVDVNDLNLLQLQLENQ-----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTT-RNED 289 (1151)
Q Consensus 222 ~~~~~------~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~ 289 (1151)
..... ........++.. .+.+. ..+++-+||+|++...+...+..+...+........+|++| ....
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred hcCCCCceEEEecccccCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 11000 000001111111 12222 23566799999997666677778877776544455555544 4444
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh-hHHHHHHHHh
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP-LAAKTLGGLL 356 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~L 356 (1151)
+...+....+.++++.++.++....+...+..... ... .+.++.|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44333322337899999999999888876543221 122 367888999999965 6777776554
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=8.6e-05 Score=87.75 Aligned_cols=199 Identities=17% Similarity=0.184 Sum_probs=115.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEEEEeCCCCCHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~vs~~~~~~~~~~~ 220 (1151)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-...... ...+-.+..+ .-.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHH
Confidence 579999999999999997653 3446889999999999999999884321111100 0000000000 11111
Q ss_pred HHHHhcC------CCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCccc
Q 044085 221 ILQAAVG------SVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV-TTRNED 289 (1151)
Q Consensus 221 i~~~~~~------~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~ 289 (1151)
|...... .......+++.+.+... ..+++-++|+|++...+....+.+...+..-...+++|+ ||....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111000 00011122222211111 124556899999976666667777777766555666655 444444
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
+...+....+.++++.+++++....+.+.+-... .... .+....|++.++|.+.-+...-
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-VEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 4433333334899999999999988887663322 1222 2677889999999987665544
No 104
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00014 Score=85.51 Aligned_cols=198 Identities=17% Similarity=0.146 Sum_probs=115.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
+++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++...-.... + + ..+..-...+.|
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~---~----~pCg~C~~C~~i 79 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGP-T---A----TPCGVCESCVAL 79 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCC-C---C----CcccccHHHHHh
Confidence 578999999999999997643 33467899999999999999998732210000 0 0 000000001111
Q ss_pred HHH---------hcC--CCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCcc
Q 044085 222 LQA---------AVG--SVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNE 288 (1151)
Q Consensus 222 ~~~---------~~~--~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~ 288 (1151)
... +.. ....++..++.+.+... ..+++-++|+|++...+......+...+........+| +||...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 100 000 00111111222222111 12456689999997777778888877777655555555 555555
Q ss_pred cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh-HHHHHHHHh
Q 044085 289 DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL-AAKTLGGLL 356 (1151)
Q Consensus 289 ~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~~L 356 (1151)
.+...+....+.++++.++.++..+.+.+.+..... ... .+....|++.++|.+- |+..+-..+
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~---~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVD---DAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555444333348999999999988888765533221 122 2567888999999875 444444433
No 105
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.05 E-value=0.00016 Score=73.51 Aligned_cols=182 Identities=22% Similarity=0.236 Sum_probs=105.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+|||.++-++++.=++..... .+..+--+.++|++|.||||||.-+++ +...++ . ++-.....-..-+..|
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~--Emgvn~-k----~tsGp~leK~gDlaai 97 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN--ELGVNL-K----ITSGPALEKPGDLAAI 97 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH--HhcCCe-E----ecccccccChhhHHHH
Confidence 5799999998888777765443 345677899999999999999999999 444433 1 1111111111111122
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccC--------CCCCcE-----------EE
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKA--------GLPGSK-----------II 282 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~--------~~~gs~-----------ii 282 (1151)
+..+. +.=++.+|.+..-....-+-+..+..+ .++++| |=
T Consensus 98 Lt~Le---------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIG 156 (332)
T COG2255 98 LTNLE---------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIG 156 (332)
T ss_pred HhcCC---------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEee
Confidence 22221 223444565543322222222222111 123333 44
Q ss_pred EecCcccccccccCC-CceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 283 VTTRNEDVSSMVTTP-SAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 283 vTtr~~~v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
.|||.-.+....... .-+.+++-.+.+|-.++..+.|---. .... ++.+.+|+++..|-|--+.-+-+..
T Consensus 157 ATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~---~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 157 ATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEID---EEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCC---hHHHHHHHHhccCCcHHHHHHHHHH
Confidence 689976554443321 12678999999999999988773221 1222 3789999999999997655544433
No 106
>PRK05642 DNA replication initiation factor; Validated
Probab=98.05 E-value=7.5e-05 Score=78.30 Aligned_cols=155 Identities=21% Similarity=0.268 Sum_probs=93.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
..+.|+|..|+|||.||+.+++.. ...- ..++|++..+ +... ...+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~--~~~~-~~v~y~~~~~------~~~~-----------------~~~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF--EQRG-EPAVYLPLAE------LLDR-----------------GPELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HhCC-CcEEEeeHHH------HHhh-----------------hHHHHHhhhhCC
Confidence 568999999999999999998843 2222 4566766432 1111 012223333222
Q ss_pred eEEEEeCCCCC-ChhhHHh-hhccccCC-CCCcEEEEecCcccc---------cccccCCCceeecCCCChhhhHHHHHH
Q 044085 250 FLLVLDDMWTE-NYDDWTN-LCKPFKAG-LPGSKIIVTTRNEDV---------SSMVTTPSAAYSLENLLRDDCLSIFVR 317 (1151)
Q Consensus 250 ~LlVlDdvw~~-~~~~~~~-l~~~l~~~-~~gs~iivTtr~~~v---------~~~~~~~~~~~~l~~L~~~~~~~lf~~ 317 (1151)
++|+||+... ....|+. +...+... ..|..||+|++...- ...+.... +++++++++++-.+++.+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl-~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLAL-VFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCe-eeecCCCCHHHHHHHHHH
Confidence 6789999532 1235543 44443321 246788888875321 11121223 789999999999999987
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 318 HSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
++.... ...+ .++..-|++++.|..-++..+-..|
T Consensus 178 ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 664432 2222 3788889999998876666555544
No 107
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=7.6e-08 Score=96.83 Aligned_cols=172 Identities=20% Similarity=0.290 Sum_probs=106.2
Q ss_pred CCccEEEEeCCccccccCCCCC---CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCC--CCCCCCCCccE
Q 044085 941 SHITTISMYGSRLVSFAEGGLP---SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIP--EEVGFPPNITE 1015 (1151)
Q Consensus 941 ~~L~~L~ls~n~l~~~~~~~~~---~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~ 1015 (1151)
+.|+.|+|++..|+.-.-..+. ..|+.|.|.++.+...+...+..-.+|+.|+|+.|.-.+... -.+..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3577777777666432211111 467777777777776666667777777777777776554322 12456777777
Q ss_pred EEecCCCccccccccCCCC-CCCcceEEeccCCCCc-----ccccCCCCCcceEEecCCCCCCcC--CCCCCCCCCCeee
Q 044085 1016 LHIEGPNICKLFFDLGFHN-LTSVRDLFIKDGLEDE-----VSFQKLPNSLVKLNIREFPGLESL--SFVRNLTSLERLT 1087 (1151)
Q Consensus 1016 L~Ls~n~l~~~~~~~~~~~-l~~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~l~~c~~l~~l--~~l~~l~~L~~L~ 1087 (1151)
|+|+.|.+..........+ -+.|+.|+|+++..++ ..+..-.++|..|++++|..++.- ..+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 7777776432221111111 2466777777743222 222223467888888888777661 1667889999999
Q ss_pred EeCCCCCCcCCCC----CCCCCcceEeeccC
Q 044085 1088 LCECPNLISLPKN----GLPPSLVYVDIYSC 1114 (1151)
Q Consensus 1088 l~~c~~l~~l~~~----~~~~sL~~L~i~~c 1114 (1151)
++.|-.|. |.. +..|+|..|++.||
T Consensus 345 lsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 99995442 221 34578999999998
No 108
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.04 E-value=0.00016 Score=82.30 Aligned_cols=186 Identities=15% Similarity=0.160 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh--c------------------cCCC
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE--E------------------HFPD 201 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~------------------~f~~ 201 (1151)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+.....-. . ++ +
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~-~ 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL-D 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC-C
Confidence 468999999999999996543 33577899999999999999987742110 0 11 1
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEE
Q 044085 202 FRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKI 281 (1151)
Q Consensus 202 ~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 281 (1151)
..++.-+..... +-.++++..+.. .-..+++-++|+|++.......+..+...+......+.+
T Consensus 88 -~~~~~~~~~~~~-~~~~~l~~~~~~---------------~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 88 -VIEIDAASNNGV-DDIREILDNVKY---------------APSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred -EEEeeccccCCH-HHHHHHHHHHhc---------------CcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 122221111111 111222221110 001245568899998655455667777666554456676
Q ss_pred EEecCccc-ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 282 IVTTRNED-VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 282 ivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
|++|.+.. +..........+++.++++++..+.+...+-.... ... .+.+..+++.++|.|..+.....
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIE---DEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCChHHHHHHHH
Confidence 66664433 33222222237889999999998888876643221 122 37788899999999876655443
No 109
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=7.2e-05 Score=87.82 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc-------------------cCCCc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE-------------------HFPDF 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 202 (1151)
++++|.+..++.+..++.... -...+.++|+.|+||||+|+.+.....-.. .|++
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d- 89 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD- 89 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc-
Confidence 478999999999999997643 234678999999999999999987431100 1101
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII 282 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 282 (1151)
.+++..+....++ ..++++.... ..-..+++-++|+|++...+......+...+......+.+|
T Consensus 90 ~~ei~~~~~~~vd-~ir~l~~~~~---------------~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 90 LIEVDAASNTQVD-AMRELLDNAQ---------------YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eeEeeccccCCHH-HHHHHHHHHh---------------hCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 1122111111111 1112221111 00013566799999997666666777777776654556655
Q ss_pred E-ecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 283 V-TTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 283 v-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
+ ||....+...+....+.++++.++.++..+.+.+.+-... .... .+..+.|++.++|.+--+..+
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~---~~al~~la~~s~Gslr~al~l 220 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFD---ATALQLLARAAAGSMRDALSL 220 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5 5444444433222233899999999999888776553221 1222 256788999999987544333
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.00014 Score=85.97 Aligned_cols=198 Identities=16% Similarity=0.194 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEE-eCCCCCHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAY-VSEDFDAVGITKV 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~-vs~~~~~~~~~~~ 220 (1151)
.++||.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-...+ +...|-. +...+..-...+.
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~-~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMI-DDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcC-CccccccccCCCCccCHHHHH
Confidence 578999999999999886643 23468899999999999999988743211111 0001110 0011111111111
Q ss_pred HHHHhc------CCCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCccc
Q 044085 221 ILQAAV------GSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNED 289 (1151)
Q Consensus 221 i~~~~~------~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~ 289 (1151)
+...-. ........+++...+... ..+++-++|+|++...+....+.+...+..-...+.+| +|++...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 111000 000111123332222111 23456688999997666666777777777654455554 4545444
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHH
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAA 349 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 349 (1151)
+...+....+.+++++++.++....+.+.+.... .... .+.++.|++.++|..--+
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~---~eal~~La~~s~Gdlr~a 225 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQID---ADALQLIARKAQGSMRDA 225 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhCCCHHHH
Confidence 4443333334899999999998877776553221 1122 267888999999966533
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=9.2e-05 Score=77.90 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=89.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNK 248 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k 248 (1151)
...+.|+|..|+|||+||+.+++... ... ....+++..+.. .. . ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~--~~~~~i~~~~~~------~~----~-----------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGG--RNARYLDAASPL------LA----F-----------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCC--CcEEEEehHHhH------HH----H-----------------hhc-cc
Confidence 34688999999999999999998532 122 234445433211 00 0 111 23
Q ss_pred ceEEEEeCCCCCChhhHHhhhccccCC-CCCc-EEEEecCcccccc--------cccCCCceeecCCCChhhhHHHHHHh
Q 044085 249 KFLLVLDDMWTENYDDWTNLCKPFKAG-LPGS-KIIVTTRNEDVSS--------MVTTPSAAYSLENLLRDDCLSIFVRH 318 (1151)
Q Consensus 249 ~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs-~iivTtr~~~v~~--------~~~~~~~~~~l~~L~~~~~~~lf~~~ 318 (1151)
.-++|+||+...+...-+.+...+... ..+. .||+|++...... .+.... .+.+.++++++-..++.+.
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~-~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGL-VYELKPLSDADKIAALKAA 169 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCe-EEEecCCCHHHHHHHHHHH
Confidence 457899999543222333444444321 1343 4777776543221 111122 7899999998877777654
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 319 SLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+-. ...... ++..+.+++.+.|.+..+..+...+
T Consensus 170 ~~~-~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAE-RGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHH-cCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 322 122222 3778888999999999888777665
No 112
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.01 E-value=2.9e-05 Score=87.83 Aligned_cols=181 Identities=14% Similarity=0.112 Sum_probs=99.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
..++.|+++.+++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~------~~v~~--- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF------IRVVG--- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE------Eecch---
Confidence 457899999999999877532110 1123456889999999999999999983 33333 22221
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-----------Chhh---HHhhhccccC--CCC
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-----------NYDD---WTNLCKPFKA--GLP 277 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~---~~~l~~~l~~--~~~ 277 (1151)
.++...... .........+...-...+.+|++||++.- +... +..+...+.. ...
T Consensus 190 -~~l~~~~~g--------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 -SELVRKYIG--------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred -HHHHHHhhh--------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 111111110 00111111122222346789999998531 1111 2222222221 124
Q ss_pred CcEEEEecCccccc-cccc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 278 GSKIIVTTRNEDVS-SMVT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 278 gs~iivTtr~~~v~-~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
+.+||.||...+.. .... .....+.+...+.++..++|..++.+... ....+ ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 67788888754322 1111 11237899999999999999887754322 11112 355677777754
No 113
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.0002 Score=81.36 Aligned_cols=185 Identities=12% Similarity=0.155 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh------ccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE------EHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------~~f~~~~~wv~vs~~~~~~ 215 (1151)
.+++|.+...+.+.+++.... -.+.+.++|+.|+||||+|+.+.+..... ..|.-..+-+........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 468999999999999997643 34578899999999999999997743210 112001111110111111
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-Ccccccccc
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTT-RNEDVSSMV 294 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~ 294 (1151)
+..+.+++++.. .-..+++-++++|++.......+..+...+......+.+|++| +...+....
T Consensus 91 ~~i~~l~~~~~~---------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 91 DDIRNLIDQVRI---------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred HHHHHHHHHHhh---------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 111122221110 0012345689999986544456677665554433445555444 444444333
Q ss_pred cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHH
Q 044085 295 TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKT 351 (1151)
Q Consensus 295 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 351 (1151)
......++++++++++....+...+...+- ... .+.+..+++.++|.+-.+..
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFE---DDALHIIAQKADGALRDALS 208 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhCCCCHHHHHH
Confidence 322337899999999999888876643221 122 27788899999997654433
No 114
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.01 E-value=8.1e-05 Score=77.59 Aligned_cols=158 Identities=19% Similarity=0.241 Sum_probs=98.4
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
.+..+.+||++|+||||||+.+....+ . ....||..|..-.-..-+++|.++.. =...+.+
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk--~---~SyrfvelSAt~a~t~dvR~ife~aq--------------~~~~l~k 221 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSK--K---HSYRFVELSATNAKTNDVRDIFEQAQ--------------NEKSLTK 221 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcC--C---CceEEEEEeccccchHHHHHHHHHHH--------------HHHhhhc
Confidence 456788999999999999999998543 2 22457888766554445555555432 1234567
Q ss_pred CceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE--ecCcccc--cccccCCCceeecCCCChhhhHHHHHHhhc--C
Q 044085 248 KKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV--TTRNEDV--SSMVTTPSAAYSLENLLRDDCLSIFVRHSL--G 321 (1151)
Q Consensus 248 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv--Ttr~~~v--~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~--~ 321 (1151)
+|.+|.+|.|..-+..+.+.+ +|.-.+|.-++| ||.++.. -...-....++.|+.|..++...++.+... +
T Consensus 222 rkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~ 298 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLG 298 (554)
T ss_pred ceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhc
Confidence 899999999966554444443 344445665554 7777643 122222233899999999999998877332 2
Q ss_pred CC-C---CCCCc---hHHHHHHHHHHHcCCChh
Q 044085 322 RT-D---FSAHQ---YLSEIGEKIVDKCNGSPL 347 (1151)
Q Consensus 322 ~~-~---~~~~~---~~~~~~~~i~~~c~g~Pl 347 (1151)
+. . .-.++ --..+.+-++.-|+|-.-
T Consensus 299 dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 299 DSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred cccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 1 11111 123466667778888653
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00012 Score=89.63 Aligned_cols=194 Identities=14% Similarity=0.123 Sum_probs=112.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.... ... .+..+ ..-+.|
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~-~~~---pCg~C----~sC~~~ 81 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGP-TST---PCGEC----DSCVAL 81 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCC-CCC---CCccc----HHHHHH
Confidence 478999999999999997653 23467899999999999999998743210000 000 00000 000000
Q ss_pred HHH------hc--CCCCCcchHHHHH---HHH-HHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCcc
Q 044085 222 LQA------AV--GSVDVNDLNLLQL---QLE-NQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV-TTRNE 288 (1151)
Q Consensus 222 ~~~------~~--~~~~~~~~~~~~~---~l~-~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~ 288 (1151)
... +. ........+++.+ .+. .-..++.-++|||++...+...++.|...+..-...+.+|+ ||...
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 000 00 0000011222211 111 11235556889999987777888888888877655666555 44444
Q ss_pred cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 289 DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 289 ~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
.+...+....+.|.++.++.++..+.+.+.+-.. ..... .+....|++.++|.+..+...
T Consensus 162 kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E-Gv~id---~eal~lLa~~sgGdlR~Al~e 221 (824)
T PRK07764 162 KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE-GVPVE---PGVLPLVIRAGGGSVRDSLSV 221 (824)
T ss_pred hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5544444334489999999999888887654222 22222 256678999999988544433
No 116
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00018 Score=85.48 Aligned_cols=196 Identities=16% Similarity=0.240 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEE-EE---eCCCCCHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAW-AY---VSEDFDAVG 216 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~w-v~---vs~~~~~~~ 216 (1151)
.+++|.+...+.|.+++.... -...+.++|+.|+||||+|+.++...- +.+..+ +... .| ....++...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~Ln-C~~~~~~~~pC~~C~~~~~~~~Dvie 91 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALN-CSHKTDLLEPCQECIENVNNSLDIIE 91 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhc-ccccCCCCCchhHHHHhhcCCCcEEE
Confidence 468999999999999997653 235677999999999999999987321 111000 0000 00 000000000
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcE-EEEecCcccccccc
Q 044085 217 ITKVILQAAVGSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSK-IIVTTRNEDVSSMV 294 (1151)
Q Consensus 217 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~-iivTtr~~~v~~~~ 294 (1151)
+ .. ......++..++.+.+... ..+++-++|+|++.......+..+...+........ |++|++...+....
T Consensus 92 i-----da-asn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 92 M-----DA-ASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred E-----ec-cccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 0 00 0000011111222222111 125666999999976666778888777665444455 45565555554443
Q ss_pred cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 295 TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 295 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
....+.+.+.+++.++..+.+...+-..+ .... .+.++.|++.++|.+--+..+.
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~keg-I~id---~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKEN-ISYE---KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 33334899999999999888877543222 1122 2567889999999775444433
No 117
>PLN03150 hypothetical protein; Provisional
Probab=98.00 E-value=1e-05 Score=97.88 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=39.1
Q ss_pred ccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEec
Q 044085 965 LCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIK 1044 (1151)
Q Consensus 965 L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~ 1044 (1151)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++..+. .+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~-~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch-HHhcCCCCCEEECc
Confidence 34444445444444444455555555555555555544554445555555555555554433322 24445555555554
Q ss_pred c
Q 044085 1045 D 1045 (1151)
Q Consensus 1045 ~ 1045 (1151)
+
T Consensus 499 ~ 499 (623)
T PLN03150 499 G 499 (623)
T ss_pred C
Confidence 4
No 118
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.99 E-value=5.8e-06 Score=59.90 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=19.7
Q ss_pred cccEEEecCccccccCccccCCCcccEEEccccccccc
Q 044085 557 RLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVL 594 (1151)
Q Consensus 557 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~l 594 (1151)
+|++|++++|.|+.+|..+++|++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555555455555555555555555544
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.99 E-value=0.00023 Score=79.34 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=86.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
++++|.+...+.+..++..+. -..++.++|++|+||||+|+.+++.. ... ...++.+. ... +..+..
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~----~~~i~~~~-~~~-~~i~~~ 87 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE----VLFVNGSD-CRI-DFVRNR 87 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc----ceEeccCc-ccH-HHHHHH
Confidence 578999999999999997542 34678889999999999999998842 222 23444443 221 122221
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCccc-ccccccCCCc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-NYDDWTNLCKPFKAGLPGSKIIVTTRNED-VSSMVTTPSA 299 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~ 299 (1151)
+..... . ..+.+.+-++|+||+... .....+.+...+.....++++|+||.... +.........
T Consensus 88 l~~~~~------------~--~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 88 LTRFAS------------T--VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HHHHHH------------h--hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 111110 0 001234568899999544 22333444444444456778888886532 2222222222
Q ss_pred eeecCCCChhhhHHHHH
Q 044085 300 AYSLENLLRDDCLSIFV 316 (1151)
Q Consensus 300 ~~~l~~L~~~~~~~lf~ 316 (1151)
.+.++..+.++..+++.
T Consensus 154 ~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMK 170 (316)
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 67777777777765554
No 120
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.97 E-value=1.1e-06 Score=91.32 Aligned_cols=95 Identities=17% Similarity=0.170 Sum_probs=56.8
Q ss_pred HHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCC----CCCcccCC-----CCCCCe
Q 044085 697 EAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGA----KLPTWLGQ-----SSFKNL 767 (1151)
Q Consensus 697 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~----~~p~~~~~-----~~~~~L 767 (1151)
...+..+..+..++++.|.+.. ......-..+...++|+..++++.... .+|..+.. ...+.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~--------EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L 94 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGT--------EAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL 94 (382)
T ss_pred HHHhcccCceEEEeccCCchhH--------HHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence 3445666778888888776532 222334455566667887777764322 23332210 135688
Q ss_pred eEEEEecCCCCCCCC-----CCCCCCCcceeeccCcc
Q 044085 768 VVLRFRNCNQCTSLP-----SVGHLPSLKNLVIKGMA 799 (1151)
Q Consensus 768 ~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~ 799 (1151)
+.|+||+|.+...-+ -+.++..|++|.|.+|.
T Consensus 95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 888888888754322 24557778888888774
No 121
>PF14516 AAA_35: AAA-like domain
Probab=97.95 E-value=0.0026 Score=70.57 Aligned_cols=201 Identities=13% Similarity=0.106 Sum_probs=118.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC-----CCHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED-----FDAV 215 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~-----~~~~ 215 (1151)
.+..|.|....+++.+.+.... ..+.|.|+..+|||+|..++.+..+.. .+ ..+++++..- .+..
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~-~~--~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY--RCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC-CC--EEEEEEeecCCCcccCCHH
Confidence 3456788866667777776532 388999999999999999998855432 34 4667877642 2456
Q ss_pred HHHHHHHHHhcCCCC------------CcchHHHHHHHHHHh-c--CCceEEEEeCCCCCCh--hhHHhhhcccc----C
Q 044085 216 GITKVILQAAVGSVD------------VNDLNLLQLQLENQL-K--NKKFLLVLDDMWTENY--DDWTNLCKPFK----A 274 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~------------~~~~~~~~~~l~~~l-~--~k~~LlVlDdvw~~~~--~~~~~l~~~l~----~ 274 (1151)
..++.++..+..... ..........+.+++ . +++.+|++|+|..--. ...+++...++ .
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 666666665541111 112223333444443 2 6899999999953211 11112222111 1
Q ss_pred CC----CCc--EEEEecCccccccccc----CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCC
Q 044085 275 GL----PGS--KIIVTTRNEDVSSMVT----TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNG 344 (1151)
Q Consensus 275 ~~----~gs--~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 344 (1151)
.. ..+ -|++.+.......... .....+.|.+++.+|...|..+.-.. ..+ ...++|...+||
T Consensus 160 ~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~---~~~~~l~~~tgG 231 (331)
T PF14516_consen 160 RKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQ---EQLEQLMDWTGG 231 (331)
T ss_pred cccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCH---HHHHHHHHHHCC
Confidence 11 111 2222221111111111 11127899999999999998776422 111 348899999999
Q ss_pred ChhHHHHHHHHhcCC
Q 044085 345 SPLAAKTLGGLLRGK 359 (1151)
Q Consensus 345 ~Plai~~~~~~L~~~ 359 (1151)
+|.-+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999999664
No 122
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=1.1e-06 Score=101.30 Aligned_cols=106 Identities=25% Similarity=0.320 Sum_probs=68.3
Q ss_pred cCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCee
Q 044085 552 IPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHL 631 (1151)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 631 (1151)
+..++.|.+|++.+|.|..+...+..+.+|++|+|++|.|+.+ ..+..+..|+.|++.+| .+..+ ..+..+++|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDI-SGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhc-cCCccchhhhcc
Confidence 5566777777777777777765567777777777777777776 34566666777777777 55555 335557777777
Q ss_pred ecCCCCccccCccc-ccCccCCCccCeeEec
Q 044085 632 KNSHSNLFEEMPLR-IGKLTSLRTLAKFAVG 661 (1151)
Q Consensus 632 ~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~ 661 (1151)
++++|.+. .+... ...+.+++.+.+..+.
T Consensus 168 ~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 168 DLSYNRIV-DIENDELSELISLEELDLGGNS 197 (414)
T ss_pred cCCcchhh-hhhhhhhhhccchHHHhccCCc
Confidence 77777732 23221 3555556555544443
No 123
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.00029 Score=81.22 Aligned_cols=187 Identities=14% Similarity=0.187 Sum_probs=108.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCC---c--------------eE
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD---F--------------RA 204 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~---~--------------~~ 204 (1151)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+.+...-...-.+ | .-
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 578999999999999997643 2356789999999999999999773211000000 0 01
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH-HhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE
Q 044085 205 WAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLEN-QLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV 283 (1151)
Q Consensus 205 wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 283 (1151)
|+.+....+. ..++...+.+.+.. -..+++-++|+|++........+.+...+........+|+
T Consensus 92 ~~~i~g~~~~---------------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 92 VLEIDGASHR---------------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred eEEeeccccC---------------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 1111110000 00111111111111 1235677899999965555556667766666545666665
Q ss_pred ec-CcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh-HHHHH
Q 044085 284 TT-RNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL-AAKTL 352 (1151)
Q Consensus 284 Tt-r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 352 (1151)
+| +...+..........++++++++++....+.+.+-..+ .... .+.+..|++.++|.+- |+..+
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~---~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETS---REALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 55 43444333333333899999999999888877653221 1122 2678889999999764 44443
No 124
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.92 E-value=4e-05 Score=83.71 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=61.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC--CCHHHHHHHHHHHhc-CCCCCcchH------HHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED--FDAVGITKVILQAAV-GSVDVNDLN------LLQLQ 240 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~--~~~~~~~~~i~~~~~-~~~~~~~~~------~~~~~ 240 (1151)
..++|+|++|+|||||++.+++..... +| +..+||.+.+. .++.++++.++..+. ...+..... ...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n-hf-dv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN-HP-EVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc-CC-ceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 578999999999999999999965433 68 88899999966 789999999876554 222221111 11111
Q ss_pred HHH-HhcCCceEEEEeCCC
Q 044085 241 LEN-QLKNKKFLLVLDDMW 258 (1151)
Q Consensus 241 l~~-~l~~k~~LlVlDdvw 258 (1151)
.+. .-.+++.+|++|++-
T Consensus 247 Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHcCCCeEEEEEChh
Confidence 222 235899999999993
No 125
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00019 Score=86.00 Aligned_cols=197 Identities=14% Similarity=0.174 Sum_probs=114.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
+++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++........+. ...+..-...+.|
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~-------~~~c~~c~~c~~i 83 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK-------GRPCGTCEMCRAI 83 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccCHHHHHH
Confidence 579999999999999887643 2346789999999999999999874321110000 0111111222222
Q ss_pred HHHhcCC------CCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecC-ccc
Q 044085 222 LQAAVGS------VDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTR-NED 289 (1151)
Q Consensus 222 ~~~~~~~------~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~ 289 (1151)
....... ......++..+ +.+.+ .+++-++|+|++...+....+.+...+......+.+|++|. ...
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 2211100 01111222221 11211 24567899999966555667777766666545666665553 334
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHH
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGL 355 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 355 (1151)
+..........+.++.++.++....+.+.+..... ... .+.+..|++.++|.+..+...-..
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~---~eal~~La~~s~Gdlr~al~~Lek 224 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLE---PGALEAIARAATGSMRDAENLLQQ 224 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43333222337889999999998888776643221 222 267889999999998655554433
No 126
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00036 Score=83.29 Aligned_cols=183 Identities=14% Similarity=0.179 Sum_probs=113.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh---------------------hccCC
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV---------------------EEHFP 200 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~f~ 200 (1151)
++++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.....- ..+|
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~- 90 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSY- 90 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCC-
Confidence 578999999999999997643 2356789999999999999988773310 0112
Q ss_pred CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCc
Q 044085 201 DFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGS 279 (1151)
Q Consensus 201 ~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs 279 (1151)
+ ...+..++.....++ +.++.++. .. ..+++=++|+|++...+...++.+...+..-...+
T Consensus 91 n-~~~ld~~~~~~vd~I-r~li~~~~----------------~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 91 N-IHELDAASNNSVDDI-RNLIEQVR----------------IPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred c-eEEecccccCCHHHH-HHHHHHHh----------------hCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 1 112221111111111 11111111 00 12345688999997766677888887777655566
Q ss_pred EEEE-ecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 280 KIIV-TTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 280 ~iiv-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
.+|+ ||+...+..........++++++++++....+.+.+-... ....+ +.+..|++.++|..--+...
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~---~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEP---EALNVIAQKADGGMRDALSI 222 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCH---HHHHHHHHHcCCCHHHHHHH
Confidence 6554 5555555544443344899999999999888877553322 12222 57888999999977544443
No 127
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.0004 Score=80.36 Aligned_cols=182 Identities=16% Similarity=0.168 Sum_probs=113.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCC-------------------c
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-------------------F 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-------------------~ 202 (1151)
++++|-+...+.+..++.... -..+..++|+.|+||||+|+.+.+..- +...++ .
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~-c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALV-CEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhc-CCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 578999999999999986543 334678999999999999998877321 111000 0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCC
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPG 278 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 278 (1151)
++++..+... ..+++.+.+... ..+++-++|+|++...+......+...+....+.
T Consensus 88 v~eldaas~~--------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~ 147 (535)
T PRK08451 88 IIEMDAASNR--------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSY 147 (535)
T ss_pred EEEecccccc--------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCc
Confidence 1111111111 122222222210 1145668999999777777778887777665556
Q ss_pred cEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 279 SKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 279 s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
+++|++|.+ ..+..........+++.+++.++....+.+.+-..+ .... .+.++.|++.++|.+.-+..+.
T Consensus 148 t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i~i~---~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 148 VKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-VSYE---PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 666655544 334333333334899999999999888876553322 1222 3678899999999986655553
No 128
>CHL00181 cbbX CbbX; Provisional
Probab=97.89 E-value=0.0004 Score=74.86 Aligned_cols=164 Identities=15% Similarity=0.099 Sum_probs=87.2
Q ss_pred CccccchhhHHHHHHHHh---cC-----C-CCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC
Q 044085 142 DEVYGREKDKEALVGLLR---RD-----D-LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF 212 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~---~~-----~-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~ 212 (1151)
.+++|.+..+++|.++.. -. . .........+.++|++|+||||+|+.+++.......- ....|+.++..
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~-~~~~~~~v~~~- 100 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI-KKGHLLTVTRD- 100 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC-CCCceEEecHH-
Confidence 358888877776655431 11 0 0011122347889999999999999998743211111 11235555521
Q ss_pred CHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC---------ChhhHHhhhccccCCCCCcEEEE
Q 044085 213 DAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE---------NYDDWTNLCKPFKAGLPGSKIIV 283 (1151)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iiv 283 (1151)
++ ....... ........+.+. ..-+|++|++..- ..+..+.+...+.....+.+||+
T Consensus 101 ---~l----~~~~~g~----~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ 166 (287)
T CHL00181 101 ---DL----VGQYIGH----TAPKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIF 166 (287)
T ss_pred ---HH----HHHHhcc----chHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEE
Confidence 22 2222111 111112222221 2359999999531 12233444555555545667778
Q ss_pred ecCcccccccc-------cCCCceeecCCCChhhhHHHHHHhhcC
Q 044085 284 TTRNEDVSSMV-------TTPSAAYSLENLLRDDCLSIFVRHSLG 321 (1151)
Q Consensus 284 Ttr~~~v~~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~~ 321 (1151)
++....+.... ......+.+++++.+|..+++.+.+-.
T Consensus 167 ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 167 AGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred eCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 87644332111 111237899999999999988877643
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.00033 Score=80.65 Aligned_cols=170 Identities=14% Similarity=0.124 Sum_probs=101.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
..-+.|+|..|+|||+|++++++.. ....+. .+++++ ..++...+...+... ......+++.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l--~~~~~~~~v~yv~------~~~f~~~~~~~l~~~------~~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI--ESNFSDLKVSYMS------GDEFARKAVDILQKT------HKEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH--HHhCCCCeEEEEE------HHHHHHHHHHHHHHh------hhHHHHHHHHhc-
Confidence 3458899999999999999999833 222212 233433 345666666655421 011233444444
Q ss_pred CceEEEEeCCCCCC--hhhHHhhhccccCC-CCCcEEEEecCcc---------cccccccCCCceeecCCCChhhhHHHH
Q 044085 248 KKFLLVLDDMWTEN--YDDWTNLCKPFKAG-LPGSKIIVTTRNE---------DVSSMVTTPSAAYSLENLLRDDCLSIF 315 (1151)
Q Consensus 248 k~~LlVlDdvw~~~--~~~~~~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~~lf 315 (1151)
+.-+||+||+.... ....+.+...+... ..|..||+|+... ++...+...- ++.+++++.++-.+++
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl-~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGL-SIAIQKLDNKTATAII 284 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCc-eeccCCcCHHHHHHHH
Confidence 34588899995432 12223444333321 2355788887643 2222222223 7889999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 316 VRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
.+++-...- . ..--+++..-|++.++|.|-.+..+...+
T Consensus 285 ~~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 285 KKEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 988743221 0 01224788999999999998777665444
No 130
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.88 E-value=3e-06 Score=97.86 Aligned_cols=107 Identities=28% Similarity=0.328 Sum_probs=61.2
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeec
Q 044085 554 RLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKN 633 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 633 (1151)
.+..++.+.+..|.+..+-..++.+.+|.+|++.+|.|..+...+..+++|++|++++| .+..+ .++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhee
Confidence 34445555566666655445566666666666666666666544566666666666666 55554 34555666666666
Q ss_pred CCCCccccCcccccCccCCCccCeeEeccCC
Q 044085 634 SHSNLFEEMPLRIGKLTSLRTLAKFAVGKSN 664 (1151)
Q Consensus 634 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~ 664 (1151)
++|.+ ..+ .++..+++|+.+++.++....
T Consensus 148 ~~N~i-~~~-~~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 148 SGNLI-SDI-SGLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred ccCcc-hhc-cCCccchhhhcccCCcchhhh
Confidence 66663 222 334445566666555554433
No 131
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.4e-05 Score=57.94 Aligned_cols=40 Identities=35% Similarity=0.448 Sum_probs=31.1
Q ss_pred CcccEEEcccccccccchhhhcCCCCcEEeccccccccccc
Q 044085 579 KHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLF 619 (1151)
Q Consensus 579 ~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 619 (1151)
++|++|++++|+|+.+|..+++|++|++|++++| .+.++|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 4788999999999988888888999999999888 565553
No 132
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.85 E-value=0.00021 Score=79.59 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=76.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.++++.++..+.+...|.... .|.++|++|+|||++|+++++.......| +.+.||.+++.++..+....+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--------~iil~GppGtGKT~lA~~la~~l~~~~~~-~~v~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--------NIILQGPPGVGKTFVARRLAYLLTGEKAP-QRVNMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHHhcCCccc-ceeeEEeecccccHHHHhccc
Confidence 457888999999999987543 57889999999999999999865444566 788899999988876665432
Q ss_pred HHHhcCCCCCcc-hHHHHHHHHHHh--cCCceEEEEeCCCCCChhh-HHhhhcccc
Q 044085 222 LQAAVGSVDVND-LNLLQLQLENQL--KNKKFLLVLDDMWTENYDD-WTNLCKPFK 273 (1151)
Q Consensus 222 ~~~~~~~~~~~~-~~~~~~~l~~~l--~~k~~LlVlDdvw~~~~~~-~~~l~~~l~ 273 (1151)
.-. .....- .....+.+...- .++++++|+|++...+... +.++...+.
T Consensus 246 rP~---~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 246 RPN---GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred CCC---CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 110 000000 011111222222 2468999999996654333 444444333
No 133
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.84 E-value=0.0005 Score=79.70 Aligned_cols=185 Identities=16% Similarity=0.204 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh--h-----------------ccCCCc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV--E-----------------EHFPDF 202 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~--~-----------------~~f~~~ 202 (1151)
.+++|.+.-.+.+.+++.... -..+..++|+.|+||||+|+.++....- . ..|++
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d- 89 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD- 89 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc-
Confidence 468899999999999997653 2346678999999999999998773210 0 01111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEE
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKI 281 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~i 281 (1151)
.+++..+...... +...+.+.+... ..+++-++|+|++........+.+...+........+
T Consensus 90 ~~eidaas~~gvd-----------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 90 LIEIDAASNRGID-----------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEEeCccCCCHH-----------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 1111111111110 111111111111 1356679999999765556667776666655445555
Q ss_pred EE-ecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 282 IV-TTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 282 iv-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
|+ ||+...+........+.+.+.+++.++....+.+.+-... .... .+.+..|++.++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-IEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 54 4444444333222223789999999999888877653322 1222 2667888999999876555444
No 134
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.82 E-value=0.00032 Score=72.54 Aligned_cols=165 Identities=18% Similarity=0.196 Sum_probs=93.2
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (1151)
....+.|+|..|+|||.|.+++++. .....++ .+++++ ..+....+...+.. ... ..++..++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~----~~~----~~~~~~~~ 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRD----GEI----EEFKDRLR 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHT----TSH----HHHHHHHC
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHc----ccc----hhhhhhhh
Confidence 3445789999999999999999994 3333323 344543 34455555554432 111 23344444
Q ss_pred CCceEEEEeCCCCCCh-hhHHh-hhccccCC-CCCcEEEEecCccc---------ccccccCCCceeecCCCChhhhHHH
Q 044085 247 NKKFLLVLDDMWTENY-DDWTN-LCKPFKAG-LPGSKIIVTTRNED---------VSSMVTTPSAAYSLENLLRDDCLSI 314 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~-~~~~~-l~~~l~~~-~~gs~iivTtr~~~---------v~~~~~~~~~~~~l~~L~~~~~~~l 314 (1151)
.-=++++||+..-.. ..|.+ +...+... ..|.+||+|++... +...+.... ++++++.++++..++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl-~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGL-VVELQPPDDEDRRRI 174 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSE-EEEE----HHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcc-hhhcCCCCHHHHHHH
Confidence 355889999954322 23332 32222221 24678999996532 122222333 899999999999999
Q ss_pred HHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 315 FVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 315 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
+.+.+....- .- -++++.-|++.+.+..-.+..+-.
T Consensus 175 l~~~a~~~~~-~l---~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 175 LQKKAKERGI-EL---PEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHHTT---S----HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHHhCC-CC---cHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9988753222 22 237778888888776655554443
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.0005 Score=82.02 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=113.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.+...+.|..++.... -...+.++|+.|+||||+|+.+++...-. .. +.. ....+..-+..+.+
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~-~~~----~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NS-DKP----TPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-Cc-CCC----CCCCCcccHHHHHH
Confidence 468899999999999997653 23467899999999999999998843211 11 000 00111111122222
Q ss_pred HHHhcC------CCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCcccc
Q 044085 222 LQAAVG------SVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNEDV 290 (1151)
Q Consensus 222 ~~~~~~------~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v 290 (1151)
...... .......+...+.+... ..+++-++|+|++...+...+..+...+........+| +|+....+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 111110 00111122222222111 12455689999997766677888877777644455555 45444444
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
........+.+++..++.++....+.+.+-... ....+ +.+..|++.++|.+..+.....
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg-i~is~---~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES-IEIEP---EALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC-CCCCH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 333333334788999999988877776553221 11222 5688899999998865554433
No 136
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.78 E-value=0.00021 Score=81.11 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=97.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
.+++.|+++.++++.+.+...-.. +...++-|.++|++|+|||++|+.+++. ....| +.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~~------i~v~~--- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF------IRVVG--- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCCE------EEeeh---
Confidence 357889999999998876431110 1123456889999999999999999983 32223 33321
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCC-----------ChhhHHhhhccc---cC--CC
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTE-----------NYDDWTNLCKPF---KA--GL 276 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l---~~--~~ 276 (1151)
.++.. ... ... ......+.+. -...+.+|++||+..- +...+..+...+ .. ..
T Consensus 199 -~~l~~----~~~----g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 -SELVQ----KFI----GEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred -HHHhH----hhc----cch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11111 110 001 1111112222 2346789999999531 111122222222 11 12
Q ss_pred CCcEEEEecCcccccc-ccc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044085 277 PGSKIIVTTRNEDVSS-MVT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS 345 (1151)
Q Consensus 277 ~gs~iivTtr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 345 (1151)
.+.+||.||...+... ... .....+.+...+.++-.++|+.+..+..- ....+ ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 3567787776543322 111 11237899999999999999887643221 11122 34566666664
No 137
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.0018 Score=77.33 Aligned_cols=211 Identities=17% Similarity=0.231 Sum_probs=117.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
++++|.+.-.+.|.+++.... -...+.++|+.|+||||+|+.+.+...-.... + ...+..-..-+.|
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~-~-------~~~c~~c~~c~~i 82 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGL-T-------AEPCNVCPPCVEI 82 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCC-C-------CCCCCccHHHHHH
Confidence 578999999999999987643 23567899999999999999988742110000 0 0000000111111
Q ss_pred HHHhc-------C--CCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCcccc
Q 044085 222 LQAAV-------G--SVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNEDV 290 (1151)
Q Consensus 222 ~~~~~-------~--~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~v 290 (1151)
...-. . ....++..++.+.+... ..+++-++|+|++...+......+...+......+.+| +||....+
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKV 162 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhh
Confidence 00000 0 00001111111111111 12455688999997666667777777776654455555 55555555
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh-hHHHHHHHHhc---CCCCHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP-LAAKTLGGLLR---GKYDPKDWE 366 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~L~---~~~~~~~w~ 366 (1151)
..........++++.++.++....+...+-... .... .+....|++.++|.. .|+..+-..+. ++.+.+++.
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i~i~---~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~ 238 (576)
T PRK14965 163 PITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-ISIS---DAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVA 238 (576)
T ss_pred hHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-CCCC---HHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHH
Confidence 544433334789999999998877766542221 1222 267788999999976 44444433332 223455555
Q ss_pred HHH
Q 044085 367 DVL 369 (1151)
Q Consensus 367 ~~~ 369 (1151)
.++
T Consensus 239 ~ll 241 (576)
T PRK14965 239 ELL 241 (576)
T ss_pred HHh
Confidence 554
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0016 Score=71.05 Aligned_cols=199 Identities=16% Similarity=0.152 Sum_probs=117.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh-------------hccCCCceEEEEe
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV-------------EEHFPDFRAWAYV 208 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------~~~f~~~~~wv~v 208 (1151)
.+++|.+..++.+.+.+..+. -.....++|+.|+||+++|..+.+..-- ...+|| ..|+.-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p 77 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEP 77 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEec
Confidence 468999999999999997653 2468899999999999999888763211 112322 234332
Q ss_pred CCCCCHHHHHHHHHHHhc---CCCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcE
Q 044085 209 SEDFDAVGITKVILQAAV---GSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSK 280 (1151)
Q Consensus 209 s~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 280 (1151)
....+-..+...-++..+ .....-..++. +.+.+.+ .+++-++|+|++...+......+...+..-....-
T Consensus 78 ~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~f 156 (314)
T PRK07399 78 TYQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTL 156 (314)
T ss_pred cccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeE
Confidence 100000001111111111 00001112222 2333333 25677999999977777777777777765443334
Q ss_pred EEEecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 281 IIVTTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 281 iivTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
|++|++...+.....+..+.+.+.++++++..+.+.+...... . ......++..++|.|..+.....
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~---~----~~~~~~l~~~a~Gs~~~al~~l~ 223 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI---L----NINFPELLALAQGSPGAAIANIE 223 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc---c----hhHHHHHHHHcCCCHHHHHHHHH
Confidence 4555555555555555555899999999999999987642111 0 11135788999999976655433
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.76 E-value=0.0011 Score=67.40 Aligned_cols=125 Identities=26% Similarity=0.357 Sum_probs=73.1
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 139 VDEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 139 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
+.-+.++|.+.+++.|++-...--. +....-+.++|..|.|||++++++.+... . +..--|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~--~---~GLRlIev~k~------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYA--D---QGLRLIEVSKE------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHh--h---cCceEEEECHH-------
Confidence 3456899999999988875432221 11234567899999999999999998432 2 12223344322
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCC-CChhhHHhhhccccCCC---C-CcEEEEecCcccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWT-ENYDDWTNLCKPFKAGL---P-GSKIIVTTRNEDV 290 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~---~-gs~iivTtr~~~v 290 (1151)
+..++..+.+.++. ...||+|.+||+-- ........++..+..+- + +..|.+||..+..
T Consensus 90 -----------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHL 153 (249)
T PF05673_consen 90 -----------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHL 153 (249)
T ss_pred -----------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhc
Confidence 12233333333332 45799999999842 23345666666655432 2 3345555544443
No 140
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.75 E-value=0.00049 Score=73.86 Aligned_cols=162 Identities=11% Similarity=0.119 Sum_probs=82.4
Q ss_pred ccccchhhHHHHHHHHhcC--------C-CCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 143 EVYGREKDKEALVGLLRRD--------D-LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~--------~-~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
.++|.+..+++|.++.... . ....+...-+.++|++|+||||+|+.+++.......- ....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~-~~~~~v~~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL-SKGHLIEVERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc-cCCceEEecHH--
Confidence 5789888776665432211 0 0012344567899999999999999998743111111 11123333221
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC--------hhhHHhhhccccCCCCCcEEEEec
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN--------YDDWTNLCKPFKAGLPGSKIIVTT 285 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTt 285 (1151)
++.. ... ..........+.+. ..-+|++|++..-. ....+.+...+........+|+++
T Consensus 84 --~l~~----~~~----g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 --DLVG----EYI----GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred --Hhhh----hhc----cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 110 01111112222221 23588999995311 123344554444443344566665
Q ss_pred Ccccccc------cc-cCCCceeecCCCChhhhHHHHHHhhc
Q 044085 286 RNEDVSS------MV-TTPSAAYSLENLLRDDCLSIFVRHSL 320 (1151)
Q Consensus 286 r~~~v~~------~~-~~~~~~~~l~~L~~~~~~~lf~~~~~ 320 (1151)
....... .. ......+.++.++.+|-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 5433211 11 11122688999999999999987664
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.74 E-value=0.0004 Score=75.00 Aligned_cols=162 Identities=14% Similarity=0.060 Sum_probs=86.1
Q ss_pred ccccchhhHHHHHHHHhcCCC---------CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 143 EVYGREKDKEALVGLLRRDDL---------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~---------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
.++|.+..+++|.++...... .......-+.++|++|+||||+|+.++......... ....|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~-~~~~~v~v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV-RKGHLVSVTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc-ccceEEEecH---
Confidence 578988877776554321100 000111247899999999999998887633211111 1123555552
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC---------ChhhHHhhhccccCCCCCcEEEEe
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE---------NYDDWTNLCKPFKAGLPGSKIIVT 284 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 284 (1151)
.++ +..+... ........+.+. ..-+|++|++..- ....++.+...+.....+.+||++
T Consensus 99 -~~l----~~~~~g~----~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a 166 (284)
T TIGR02880 99 -DDL----VGQYIGH----TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILA 166 (284)
T ss_pred -HHH----hHhhccc----chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 122 2222111 111122222221 3468899999421 122344555555555556677777
Q ss_pred cCccccccccc-------CCCceeecCCCChhhhHHHHHHhhc
Q 044085 285 TRNEDVSSMVT-------TPSAAYSLENLLRDDCLSIFVRHSL 320 (1151)
Q Consensus 285 tr~~~v~~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~~ 320 (1151)
+.......... .....+++++++.+|..+++...+-
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 75432221111 1122789999999999999887663
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.69 E-value=0.0013 Score=77.65 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.... .. ..+..+.+- +.|
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~-~~---~pC~~C~~C----~~i 82 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGP-TP---MPCGECSSC----KSI 82 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCC-CC---CCCccchHH----HHH
Confidence 578999999999999997643 34578899999999999999998843211000 00 001111111 111
Q ss_pred HHHhc------CCCCCcchHHHHHHH---HH-HhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-Ccccc
Q 044085 222 LQAAV------GSVDVNDLNLLQLQL---EN-QLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTT-RNEDV 290 (1151)
Q Consensus 222 ~~~~~------~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v 290 (1151)
...-. ........++..... .. -..+++-++|+|++...+...++.+...+......+.+|++| ....+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 10000 000011122222111 11 123566689999997766677788877777655566666555 43444
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
........+.+++++++.++..+.+.+.+.... .... .+.+..|++.++|.+-.+...-
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id---~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYE---DEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 433333333789999999999888877664322 1222 3678889999999886554443
No 143
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.68 E-value=0.0002 Score=75.92 Aligned_cols=166 Identities=19% Similarity=0.183 Sum_probs=103.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
++.+.+|+.+...+..++...+. .-+..|.|.|-.|.|||.+.+++.+... ...+|+++-+.|+...++..
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n------~~~vw~n~~ecft~~~lle~ 75 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN------LENVWLNCVECFTYAILLEK 75 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC------CcceeeehHHhccHHHHHHH
Confidence 45788999999999999977653 2345678999999999999999999542 34589999999999999999
Q ss_pred HHHHhc-CCCCCc----chHHHHH---HHHH--Hhc--CCceEEEEeCCCCCChhhHHhhhcc----cc-CCCCCcEEEE
Q 044085 221 ILQAAV-GSVDVN----DLNLLQL---QLEN--QLK--NKKFLLVLDDMWTENYDDWTNLCKP----FK-AGLPGSKIIV 283 (1151)
Q Consensus 221 i~~~~~-~~~~~~----~~~~~~~---~l~~--~l~--~k~~LlVlDdvw~~~~~~~~~l~~~----l~-~~~~gs~iiv 283 (1151)
|+.+.. .+.+.. +.+.... .+.+ ... ++.++||||++.. ..+.+++.-+ +. --+...-+|+
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~ii 153 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVII 153 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEE
Confidence 999985 222211 1122222 2332 111 4689999999932 2333322110 11 1111223344
Q ss_pred ecCcc--cc-cccccCC-CceeecCCCChhhhHHHHHH
Q 044085 284 TTRNE--DV-SSMVTTP-SAAYSLENLLRDDCLSIFVR 317 (1151)
Q Consensus 284 Ttr~~--~v-~~~~~~~-~~~~~l~~L~~~~~~~lf~~ 317 (1151)
++-.. .. ...++.. ..++....-+.+|...++.+
T Consensus 154 ls~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 154 LSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred EeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 43321 11 1112322 22677788889998888865
No 144
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.66 E-value=0.0011 Score=76.26 Aligned_cols=161 Identities=18% Similarity=0.194 Sum_probs=92.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCC-CceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFP-DFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
...+.|+|..|+|||+||+++++.. ....+ ..+++++. .++...+...+... ..+ .+.+.+++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~~~----~~~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI--LENNPNAKVVYVSS------EKFTNDFVNALRNN----KME----EFKEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH--HHhCCCCcEEEEEH------HHHHHHHHHHHHcC----CHH----HHHHHHHh
Confidence 3468899999999999999999943 33331 23455542 33444455444311 122 23333332
Q ss_pred CceEEEEeCCCCCChh-h-HHhhhccccCC-CCCcEEEEecCcc-c--------ccccccCCCceeecCCCChhhhHHHH
Q 044085 248 KKFLLVLDDMWTENYD-D-WTNLCKPFKAG-LPGSKIIVTTRNE-D--------VSSMVTTPSAAYSLENLLRDDCLSIF 315 (1151)
Q Consensus 248 k~~LlVlDdvw~~~~~-~-~~~l~~~l~~~-~~gs~iivTtr~~-~--------v~~~~~~~~~~~~l~~L~~~~~~~lf 315 (1151)
.-+||+||+...... . .+.+...+... ..|..+|+|+... . +...+.... .+.+++.+.++-.+++
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~-~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGL-VVDIEPPDLETRLAIL 277 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCe-EEEeCCCCHHHHHHHH
Confidence 348899999542111 1 12233322221 1345677777642 1 122222222 6899999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHH
Q 044085 316 VRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKT 351 (1151)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 351 (1151)
.+.+.... ...+ +++...|++.+.|..-.+.-
T Consensus 278 ~~~~~~~~-~~l~---~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 278 QKKAEEEG-LELP---DEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHH
Confidence 88875422 1222 37788889998887765443
No 145
>PRK06620 hypothetical protein; Validated
Probab=97.65 E-value=0.00047 Score=70.86 Aligned_cols=166 Identities=11% Similarity=0.036 Sum_probs=90.6
Q ss_pred CCccccchh--hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 141 EDEVYGREK--DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 141 ~~~~vgr~~--~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
++.++|... ....+.+|-..... .+-.+.+.|+|++|+|||+|++.+++... .. ++. ..+..
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~~--~~------~~~--~~~~~---- 79 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGV--NPYKFTLLIKGPSSSGKTYLTKIWQNLSN--AY------IIK--DIFFN---- 79 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHcccc--CCCcceEEEECCCCCCHHHHHHHHHhccC--CE------Ecc--hhhhc----
Confidence 445666622 34455555431110 01115689999999999999999877432 11 111 10000
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccC-CCCCcEEEEecCcccc-------
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKA-GLPGSKIIVTTRNEDV------- 290 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v------- 290 (1151)
+ +.. ...-++++||+..-. + ..+...+.. ...|..||+|++...-
T Consensus 80 ----------------~-------~~~-~~~d~lliDdi~~~~--~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L 132 (214)
T PRK06620 80 ----------------E-------EIL-EKYNAFIIEDIENWQ--E-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDL 132 (214)
T ss_pred ----------------h-------hHH-hcCCEEEEeccccch--H-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHH
Confidence 0 011 123578899994211 1 122222211 1246789999875432
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
...+.... +++++++++++-..++.+.+... ....+ +++..-|++.+.|.--.+.-+-.
T Consensus 133 ~SRl~~gl-~~~l~~pd~~~~~~~l~k~~~~~-~l~l~---~ev~~~L~~~~~~d~r~l~~~l~ 191 (214)
T PRK06620 133 SSRIKSVL-SILLNSPDDELIKILIFKHFSIS-SVTIS---RQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred HHHHhCCc-eEeeCCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 11222223 79999999999888887766422 22222 37888888888876655444433
No 146
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0017 Score=77.04 Aligned_cols=193 Identities=16% Similarity=0.219 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
++++|.+...+.+.+++.... -...+.++|+.|+||||+|+.+.....-. +-++ ..+++.-...+.|
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~-~~~~-------~~pC~~C~~C~~i 82 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCL-NPPD-------GEPCNECEICKAI 82 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCC-CCCC-------CCCCCccHHHHHH
Confidence 579999999999999997653 23567789999999999999997732111 0000 0111111111111
Q ss_pred HHHhcC------CCCCcchHHHHHHHHHH-----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE-EecCccc
Q 044085 222 LQAAVG------SVDVNDLNLLQLQLENQ-----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VTTRNED 289 (1151)
Q Consensus 222 ~~~~~~------~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vTtr~~~ 289 (1151)
...... .......++.. .+... ..+++-++|+|++.......+..+...+........+| +||....
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir-~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIR-DIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 111000 00001122211 12222 13556788999997666667777777666544444544 5555555
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
+........+.+.+.+++.++....+...+-..+ .... .+.+..|++.++|.+..+...
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i~i~---~~al~~ia~~s~G~~R~al~~ 220 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEG-IEYE---DEALRLIARAAEGGMRDALSI 220 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 5444333334789999999998888877653222 1122 266788899999987654433
No 147
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=5.4e-07 Score=90.87 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=118.0
Q ss_pred CCccEEEEcCCCCccc-CccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC-ccccccccCCCCCCCcce
Q 044085 963 SNLCSLTLFGCRYLTA-LPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN-ICKLFFDLGFHNLTSVRD 1040 (1151)
Q Consensus 963 ~~L~~L~L~~n~~~~~-l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~ 1040 (1151)
+.|+.|||++-.+... +...+..+..|+.|.|.++.+.+.+...++.-.+|..|+|+.|. ++.......+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5799999999887653 33446789999999999999988777777888999999999998 887665556889999999
Q ss_pred EEeccCCCCccccc----CCCCCcceEEecCCCCCC---cCC-CCCCCCCCCeeeEeCCCCCCcCCC--CCCCCCcceEe
Q 044085 1041 LFIKDGLEDEVSFQ----KLPNSLVKLNIREFPGLE---SLS-FVRNLTSLERLTLCECPNLISLPK--NGLPPSLVYVD 1110 (1151)
Q Consensus 1041 L~l~~~~~~~~~~~----~~~~~L~~L~l~~c~~l~---~l~-~l~~l~~L~~L~l~~c~~l~~l~~--~~~~~sL~~L~ 1110 (1151)
|+|+.|........ .+..+|+.|++++|..-- .+. ....+|+|.+|+|++|-.++.=-. ..-.+.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999755433322 256789999999986422 222 345789999999999977664100 12246899999
Q ss_pred eccCchH
Q 044085 1111 IYSCPYL 1117 (1151)
Q Consensus 1111 i~~c~~L 1117 (1151)
++.|=.+
T Consensus 345 lsRCY~i 351 (419)
T KOG2120|consen 345 LSRCYDI 351 (419)
T ss_pred hhhhcCC
Confidence 9999554
No 148
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.0012 Score=72.45 Aligned_cols=98 Identities=10% Similarity=0.135 Sum_probs=68.5
Q ss_pred CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcc-cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCC
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNE-DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDF 325 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 325 (1151)
+++-++|+|++...+......+...+..-..++.+|+||.+. .+.....+..+.+.+.+++++++.+.+.... +.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc---
Confidence 344455779998888888888888777655667777666654 4554444444589999999999998887653 11
Q ss_pred CCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 326 SAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 326 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
.. .+.+..++..++|.|..+..+
T Consensus 181 -~~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -SD---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 11 144567789999999866554
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.61 E-value=0.00055 Score=84.64 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=85.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh---hhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR---VEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
++++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+.+..+|. ++ ...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HHHHh
Confidence 468999999999999886653 22457999999999999999998431 111121344442 11 11111
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCCC--------hhhHHhhhccccCCCCCcEEEEecCccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTEN--------YDDWTNLCKPFKAGLPGSKIIVTTRNED 289 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~--------~~~~~~l~~~l~~~~~gs~iivTtr~~~ 289 (1151)
.. .....+.+.....+.+.+ +.++.+|++|++..-. ..+...+..+....+ .-++|-+|...+
T Consensus 251 ----a~---~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e 322 (731)
T TIGR02639 251 ----AG---TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEE 322 (731)
T ss_pred ----hh---ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHH
Confidence 00 001112223233333333 3468899999984210 011122222222221 223444443322
Q ss_pred c------cccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 290 V------SSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 290 v------~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
. .......-+.+.++.++.++..+++....
T Consensus 323 ~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 323 YKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 1 11111111278999999999999998654
No 150
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.60 E-value=0.00018 Score=89.33 Aligned_cols=184 Identities=17% Similarity=0.162 Sum_probs=94.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh---hccCCCceEE-EEeCCCCCHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV---EEHFPDFRAW-AYVSEDFDAVGI 217 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~~~~~w-v~vs~~~~~~~~ 217 (1151)
++++||+.+++++++.|..... .-+.++|.+|+||||+|+.+++...- .....+..+| +.++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------
Confidence 5789999999999999876532 24569999999999999999984311 1112133343 222210
Q ss_pred HHHHHHHhcCCCCCcchHH-HHHHHHHHh-cCCceEEEEeCCCCCC-------hhhHHhhhccccCCCCCcEEEEecCcc
Q 044085 218 TKVILQAAVGSVDVNDLNL-LQLQLENQL-KNKKFLLVLDDMWTEN-------YDDWTNLCKPFKAGLPGSKIIVTTRNE 288 (1151)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~-~~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~~~~l~~~l~~~~~gs~iivTtr~~ 288 (1151)
.. ......+.+. +...+.+.- .+++.+|++|++..-. ..+-..+..+....+ .-++|-||...
T Consensus 255 ----~a---g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~ 326 (852)
T TIGR03345 255 ----QA---GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWA 326 (852)
T ss_pred ----hc---ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHH
Confidence 00 0000111111 112222221 2468999999984311 111122333322222 24555555443
Q ss_pred ccc------ccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044085 289 DVS------SMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS 345 (1151)
Q Consensus 289 ~v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 345 (1151)
... ......-+.+.+++++.++..+++....-.-.....-....+....+++.+.+.
T Consensus 327 e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 327 EYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 221 111111238999999999999997543321111111111225556666666554
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.0011 Score=76.35 Aligned_cols=181 Identities=18% Similarity=0.119 Sum_probs=102.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNK 248 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k 248 (1151)
.-+.|+|..|+|||+||+++++. .....++ .++|++. .++..++...+... ..+ .+++.+..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~~~----~f~~~~~~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG----KLN----EFREKYRKK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----cHH----HHHHHHHhc
Confidence 35899999999999999999994 3333323 3456543 34555555544311 112 233334445
Q ss_pred ceEEEEeCCCCC-ChhhH-HhhhccccCC-CCCcEEEEecC-ccc--------ccccccCCCceeecCCCChhhhHHHHH
Q 044085 249 KFLLVLDDMWTE-NYDDW-TNLCKPFKAG-LPGSKIIVTTR-NED--------VSSMVTTPSAAYSLENLLRDDCLSIFV 316 (1151)
Q Consensus 249 ~~LlVlDdvw~~-~~~~~-~~l~~~l~~~-~~gs~iivTtr-~~~--------v~~~~~~~~~~~~l~~L~~~~~~~lf~ 316 (1151)
.-+|++||+... +...+ +.+...+... ..|..||+||. .+. +...+.... .+.+++.+.++-.+++.
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl-~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGL-VAKLEPPDEETRKKIAR 273 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCc-eEeeCCCCHHHHHHHHH
Confidence 668999999532 11111 2333322211 13457888875 321 111222222 78999999999999998
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh------c-CCCCHHHHHHHHhh
Q 044085 317 RHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL------R-GKYDPKDWEDVLNS 371 (1151)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L------~-~~~~~~~w~~~~~~ 371 (1151)
+.+... ....+ .++...|++.+.|.--.+.-+-..| . ...+.+.-.+++..
T Consensus 274 ~~~~~~-~~~l~---~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 274 KMLEIE-HGELP---EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKD 331 (440)
T ss_pred HHHHhc-CCCCC---HHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 887432 22222 3788889999888655444433322 1 12345555555543
No 152
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.55 E-value=0.0004 Score=86.99 Aligned_cols=157 Identities=20% Similarity=0.228 Sum_probs=84.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh---hhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR---VEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
+.++||++++++++++|..... .-+.++|++|+|||++|+.++.... +.....+..+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 4689999999999999976532 2456999999999999999988432 111122345553 2 111111
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCC-------ChhhHHhhhccccCCCCCcEEEEecCcccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTE-------NYDDWTNLCKPFKAGLPGSKIIVTTRNEDV 290 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~-------~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 290 (1151)
. +.....+.+.....+-+. -..++.+|++|++..- ...+...+..+....+. -++|.+|.....
T Consensus 248 ----a---g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~-l~~IgaTt~~ey 319 (821)
T CHL00095 248 ----A---GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE-LQCIGATTLDEY 319 (821)
T ss_pred ----c---cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC-cEEEEeCCHHHH
Confidence 1 111112233332222222 2356899999999310 00112223332222222 344444443332
Q ss_pred c------ccccCCCceeecCCCChhhhHHHHHH
Q 044085 291 S------SMVTTPSAAYSLENLLRDDCLSIFVR 317 (1151)
Q Consensus 291 ~------~~~~~~~~~~~l~~L~~~~~~~lf~~ 317 (1151)
. ..+...-+.+.+...+.++...++..
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 1 11222223778888899988888764
No 153
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0025 Score=73.19 Aligned_cols=182 Identities=15% Similarity=0.152 Sum_probs=97.2
Q ss_pred CccccchhhH--HHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHH
Q 044085 142 DEVYGREKDK--EALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 142 ~~~vgr~~~~--~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
..++|..... ..+.++........+....-+.|+|+.|+|||+||+.+++... ... ..+++++ ...+..
T Consensus 112 nFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~-~~v~yi~------~~~f~~ 182 (445)
T PRK12422 112 NFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALR--ESG-GKILYVR------SELFTE 182 (445)
T ss_pred ceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH--HcC-CCEEEee------HHHHHH
Confidence 3455765543 3444443221110112334678999999999999999999442 222 3345554 233444
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhh--HHhhhccccCC-CCCcEEEEecCcc--------
Q 044085 220 VILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDD--WTNLCKPFKAG-LPGSKIIVTTRNE-------- 288 (1151)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~--~~~l~~~l~~~-~~gs~iivTtr~~-------- 288 (1151)
.+...+... . ...++..++ ..-++++||+....... .+.+...+... ..|..||+||...
T Consensus 183 ~~~~~l~~~----~----~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 183 HLVSAIRSG----E----MQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred HHHHHHhcc----h----HHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhH
Confidence 444444211 1 122344343 34588889984422111 22333332211 1355788887542
Q ss_pred -cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 289 -DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 289 -~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
.+...+.... .+.+++++.++-..++.+++-... ..-+ .++..-|++.+.|.-
T Consensus 254 ~rL~SR~~~Gl-~~~l~~pd~e~r~~iL~~k~~~~~-~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 254 ERLISRFEWGI-AIPLHPLTKEGLRSFLERKAEALS-IRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHhhhcCCe-EEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHhcCCCH
Confidence 1222222223 789999999999999988774422 1222 366666777776543
No 154
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00011 Score=70.58 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=42.5
Q ss_pred CccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEe
Q 044085 964 NLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFI 1043 (1151)
Q Consensus 964 ~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l 1043 (1151)
+...++|++|.+... ..|..++.|.+|.+++|.++..-|.....+|+|+.|.+.+|.|..+..-..+..++.|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455666666665432 235556666666676666665555544555666666666666544332222333344444433
Q ss_pred c
Q 044085 1044 K 1044 (1151)
Q Consensus 1044 ~ 1044 (1151)
-
T Consensus 121 l 121 (233)
T KOG1644|consen 121 L 121 (233)
T ss_pred c
Confidence 3
No 155
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.51 E-value=0.0045 Score=65.20 Aligned_cols=207 Identities=15% Similarity=0.117 Sum_probs=117.8
Q ss_pred CCccccchh---hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccC---CCceEEEEeCCCCCH
Q 044085 141 EDEVYGREK---DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF---PDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~---~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~vs~~~~~ 214 (1151)
.+..||-.. .++.+.+++.... ..+.+-+.|||..|.|||++++++....-....= .-.++.|.....++.
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 345566543 4455666665543 3455678999999999999999998744221110 013566667788899
Q ss_pred HHHHHHHHHHhc-CCCCCcchHHHHHHHHHHhcC-CceEEEEeCCCCC---ChhhHHhhhcccc---CCCCCcEEEEecC
Q 044085 215 VGITKVILQAAV-GSVDVNDLNLLQLQLENQLKN-KKFLLVLDDMWTE---NYDDWTNLCKPFK---AGLPGSKIIVTTR 286 (1151)
Q Consensus 215 ~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~---~~~~~~~l~~~l~---~~~~gs~iivTtr 286 (1151)
..+...|+.+++ ..................++. +-=+||+|.+.+- ...+-.++...++ ..-.-+-|.|-|+
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 999999999999 333444555555555556653 4568899999431 1122223333332 2223456777776
Q ss_pred ccccccccc----CCCceeecCCCChhhh-HHHHHHhh--cCCCCCCCCchHHHHHHHHHHHcCCChhHHHH
Q 044085 287 NEDVSSMVT----TPSAAYSLENLLRDDC-LSIFVRHS--LGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKT 351 (1151)
Q Consensus 287 ~~~v~~~~~----~~~~~~~l~~L~~~~~-~~lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 351 (1151)
...-+-... ..-.++.+..-..++- ..|+..-. ..-.. ...-...++++.|...++|+.=-+..
T Consensus 190 ~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 190 EAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred HHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 432211110 1112566766655544 44443321 12122 11223358999999999998744433
No 156
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=1e-05 Score=72.25 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCCcccEEEecCccccccCccc-cCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeee
Q 044085 554 RLRRLRVLSLCGYWILQLPNDI-GELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLK 632 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i-~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 632 (1151)
....|...+|++|.+..+|..| .+.+.++.|+|++|.|+.+|..+..++.|+.|+++.| .+...|..+..|.+|-.|+
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhc
Confidence 3344555555555555555555 2334555555555555555555555555555555555 4555555555555555555
Q ss_pred cCCCC
Q 044085 633 NSHSN 637 (1151)
Q Consensus 633 l~~~~ 637 (1151)
..+|.
T Consensus 130 s~~na 134 (177)
T KOG4579|consen 130 SPENA 134 (177)
T ss_pred CCCCc
Confidence 55444
No 157
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.47 E-value=0.0022 Score=63.01 Aligned_cols=108 Identities=17% Similarity=0.192 Sum_probs=64.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.++||-++.++++.-...++ +.+-+.|.||+|+||||-+..+++.. ....+.+.+.-.+.|+...++.+-..|
T Consensus 27 ~dIVGNe~tv~rl~via~~g------nmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNASdeRGIDvVRn~I 99 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEG------NMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNASDERGIDVVRNKI 99 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccCccccccHHHHHHH
Confidence 57999999999988777654 34578899999999999888877732 233343455555556554443333222
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCCChhhHHhhhc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTENYDDWTNLCK 270 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~ 270 (1151)
-..... +-.+ .++-=.||||...+.......++..
T Consensus 100 K~FAQ~--------------kv~lp~grhKIiILDEADSMT~gAQQAlRR 135 (333)
T KOG0991|consen 100 KMFAQK--------------KVTLPPGRHKIIILDEADSMTAGAQQALRR 135 (333)
T ss_pred HHHHHh--------------hccCCCCceeEEEeeccchhhhHHHHHHHH
Confidence 111100 0001 1334577888887665444444443
No 158
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=5.3e-05 Score=76.88 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=40.4
Q ss_pred CCCcccEEEecCccccccC---ccccCCCcccEEEcccccccccchhh-hcCCCCcEEecccccc-ccccccccccCCcc
Q 044085 554 RLRRLRVLSLCGYWILQLP---NDIGELKHLRYLEFSRTAIEVLPESV-STLYNLQTLILERCYR-LKKLFPDIGNLTNL 628 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp---~~i~~l~~Lr~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lp~~~~~L~~L 628 (1151)
.+..++.|||.+|.|+.-. .-+.+|++|++|+|+.|++..--.++ ..+.+|++|-|.++.. .......+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4455666666666654322 22345666666666666544221111 2445566666655421 11222234455555
Q ss_pred CeeecCCCC
Q 044085 629 RHLKNSHSN 637 (1151)
Q Consensus 629 ~~L~l~~~~ 637 (1151)
+.|+++.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 555555553
No 159
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.46 E-value=0.0029 Score=73.83 Aligned_cols=181 Identities=17% Similarity=0.146 Sum_probs=102.3
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
..-+.|+|..|+|||+||+.+++. +..+++. .+++++. .++..++...+.. ... ..+.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~----~~~----~~~~~~~~- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRN----NTM----EEFKEKYR- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHc----CcH----HHHHHHHh-
Confidence 346899999999999999999994 4444422 2445543 2333444444321 111 22333444
Q ss_pred CceEEEEeCCCCCCh--hhHHhhhccccCC-CCCcEEEEecCccc---------ccccccCCCceeecCCCChhhhHHHH
Q 044085 248 KKFLLVLDDMWTENY--DDWTNLCKPFKAG-LPGSKIIVTTRNED---------VSSMVTTPSAAYSLENLLRDDCLSIF 315 (1151)
Q Consensus 248 k~~LlVlDdvw~~~~--~~~~~l~~~l~~~-~~gs~iivTtr~~~---------v~~~~~~~~~~~~l~~L~~~~~~~lf 315 (1151)
+.-+||+||+..... ...+.+...+... ..|..||+|+.... +...+.... .+++++.+.++-..++
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl-~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGL-TVDIEPPDLETRIAIL 289 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCe-eEEecCCCHHHHHHHH
Confidence 345899999953211 1122333322211 12455777776431 122222222 7899999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh-------cCCCCHHHHHHHHhh
Q 044085 316 VRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL-------RGKYDPKDWEDVLNS 371 (1151)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L-------~~~~~~~~w~~~~~~ 371 (1151)
.+.+... ....+ .++...|++.+.|..-.+..+-..| ....+.+..++++..
T Consensus 290 ~~~~~~~-~~~l~---~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 290 KKKAEEE-GIDLP---DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHHHHHc-CCCCC---HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 9987532 11222 3788899999998876544332222 112355556666654
No 160
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.00067 Score=64.42 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEecCCCccHHHHHHHHhhch
Q 044085 172 IPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
|.|+|++|+||||+|+.++++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5799999999999999999953
No 161
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=6.4e-06 Score=93.17 Aligned_cols=109 Identities=25% Similarity=0.198 Sum_probs=69.3
Q ss_pred hhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchh-hhcCCCCcEEeccccccccccccccccCC
Q 044085 548 VFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPES-VSTLYNLQTLILERCYRLKKLFPDIGNLT 626 (1151)
Q Consensus 548 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~~~~L~ 626 (1151)
.+..+.-++.|+.|||++|+++... .+..+++|++|||++|.+..+|.- ...+. |+.|.+++| .+..+ .++.+|.
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHhhh
Confidence 3455566677777788877777664 567777777788888777777653 22333 777777777 56655 5577777
Q ss_pred ccCeeecCCCCccccC-cccccCccCCCccCeeEe
Q 044085 627 NLRHLKNSHSNLFEEM-PLRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 627 ~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~ 660 (1151)
+|++||+++|-+.+.- -.-++.|..|+.|.+.+|
T Consensus 255 sL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 7888887777642210 011445555666655444
No 162
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=2.5e-05 Score=69.83 Aligned_cols=102 Identities=17% Similarity=0.248 Sum_probs=71.0
Q ss_pred CcccEEEecCccccccC---ccccCCCcccEEEcccccccccchhhhc-CCCCcEEeccccccccccccccccCCccCee
Q 044085 556 RRLRVLSLCGYWILQLP---NDIGELKHLRYLEFSRTAIEVLPESVST-LYNLQTLILERCYRLKKLFPDIGNLTNLRHL 631 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp---~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~-L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L 631 (1151)
+.+-.++|++|.+..++ ..+.+..+|+..+|++|.+...|..|.. .+.+++|++.+| .+.++|..+..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 34555677777665554 3345667777778888888888777653 457888888877 777888888888888888
Q ss_pred ecCCCCccccCcccccCccCCCccCeeE
Q 044085 632 KNSHSNLFEEMPLRIGKLTSLRTLAKFA 659 (1151)
Q Consensus 632 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~ 659 (1151)
+++.|. ....|..+..|.+|-.|+.-.
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHhcCCC
Confidence 888877 455666676676666665433
No 163
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=9.9e-05 Score=74.96 Aligned_cols=81 Identities=22% Similarity=0.173 Sum_probs=48.1
Q ss_pred CcceEEecCCCCCCcCC---CCCCCCCCCeeeEeCCCCCCcCCCC---CCCCCcceEeeccCchHHHhhhhcCccccccc
Q 044085 1059 SLVKLNIREFPGLESLS---FVRNLTSLERLTLCECPNLISLPKN---GLPPSLVYVDIYSCPYLEERCKVKGVYWHLVA 1132 (1151)
Q Consensus 1059 ~L~~L~l~~c~~l~~l~---~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~sL~~L~i~~c~~L~~~~~~~g~~~~~i~ 1132 (1151)
++..+-+..|| +++.. .+..+|++--|+|+.+ +|.++..- .-.++|..|.+...|-....- .+....-.|+
T Consensus 200 nv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~-~~err~llIa 276 (418)
T KOG2982|consen 200 NVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDPLR-GGERRFLLIA 276 (418)
T ss_pred cchheeeecCc-ccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccccc-CCcceEEEEe
Confidence 44444444443 22332 4556666767777665 55554331 224688888888888775431 2333566789
Q ss_pred ccCeEEeCCe
Q 044085 1133 DIPYVRLNGG 1142 (1151)
Q Consensus 1133 ~i~~~~~~~~ 1142 (1151)
.+|+|+.-++
T Consensus 277 RL~~v~vLNG 286 (418)
T KOG2982|consen 277 RLTKVQVLNG 286 (418)
T ss_pred eccceEEecC
Confidence 9999987543
No 164
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.36 E-value=0.0013 Score=77.83 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=41.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
-++++|.++.++++..|+..... .....+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999876432 11233579999999999999999999843
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.35 E-value=0.0015 Score=79.50 Aligned_cols=159 Identities=22% Similarity=0.279 Sum_probs=87.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh---hccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV---EEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
+.++||+.+++++++.|..... .-+.++|++|+|||++|+.+++.... ...+.++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 4689999999999999877432 23468999999999999999874311 111224444421 111
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCC--------CChhhHHhhhccccCCCCCcEEEEecCccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWT--------ENYDDWTNLCKPFKAGLPGSKIIVTTRNED 289 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~--------~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 289 (1151)
.++. +.....+.+.....+.+.+ +.++.+|++|++.. ....+...+..++...+ .-+||-+|...+
T Consensus 252 -~lla---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E 326 (758)
T PRK11034 252 -SLLA---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQE 326 (758)
T ss_pred -HHhc---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHH
Confidence 1110 1111122333333333333 35678999999942 11122333344433332 234554444333
Q ss_pred cccc------ccCCCceeecCCCChhhhHHHHHHhh
Q 044085 290 VSSM------VTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 290 v~~~------~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
.... ....-+.+.++..+.+++.+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 2111 11111379999999999999987654
No 166
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.32 E-value=0.003 Score=73.77 Aligned_cols=161 Identities=12% Similarity=0.146 Sum_probs=93.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNK 248 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k 248 (1151)
..+.|+|..|+|||.|++.+++. ....++. .+++++. .++..++...+.. ... ..+++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~----~~~----~~f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRD----GKG----DSFRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHh----ccH----HHHHHHhhc-
Confidence 35899999999999999999994 3332212 3445443 3344444443321 111 223333332
Q ss_pred ceEEEEeCCCCCCh-hhHH-hhhccccCC-CCCcEEEEecCcc---------cccccccCCCceeecCCCChhhhHHHHH
Q 044085 249 KFLLVLDDMWTENY-DDWT-NLCKPFKAG-LPGSKIIVTTRNE---------DVSSMVTTPSAAYSLENLLRDDCLSIFV 316 (1151)
Q Consensus 249 ~~LlVlDdvw~~~~-~~~~-~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~~lf~ 316 (1151)
-=+|||||+..... ..|. .+...+... ..|..|||||+.. ++...+...- ++.++..+.+.-.+++.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GL-vv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGL-ITDVQPPELETRIAILR 456 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCc-eEEcCCCCHHHHHHHHH
Confidence 35788999954321 2232 233333221 2356688888753 1222222233 78999999999999999
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 317 RHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
+++... ..... .+++.-|++++.+..-.+..+
T Consensus 457 kka~~r-~l~l~---~eVi~yLa~r~~rnvR~Lega 488 (617)
T PRK14086 457 KKAVQE-QLNAP---PEVLEFIASRISRNIRELEGA 488 (617)
T ss_pred HHHHhc-CCCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 887543 22222 377888888887765444433
No 167
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.32 E-value=0.0047 Score=66.14 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=64.7
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHH-------
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVIL------- 222 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~------- 222 (1151)
-++++..++.... -|.+.|++|+|||++|+.+.. ... ....+++.....+..+++....
T Consensus 10 l~~~~l~~l~~g~--------~vLL~G~~GtGKT~lA~~la~--~lg----~~~~~i~~~~~~~~~dllg~~~~~~~~~~ 75 (262)
T TIGR02640 10 VTSRALRYLKSGY--------PVHLRGPAGTGKTTLAMHVAR--KRD----RPVMLINGDAELTTSDLVGSYAGYTRKKV 75 (262)
T ss_pred HHHHHHHHHhcCC--------eEEEEcCCCCCHHHHHHHHHH--HhC----CCEEEEeCCccCCHHHHhhhhcccchhhH
Confidence 3455555554432 456899999999999999987 322 2335566665555544432211
Q ss_pred -HHh----cCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC----------------CCCcEE
Q 044085 223 -QAA----VGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG----------------LPGSKI 281 (1151)
Q Consensus 223 -~~~----~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~----------------~~gs~i 281 (1151)
.+. ..........-....+.... .+...+++|++...+.+.+..+...+..+ .++.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~g~l~~A~-~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frv 154 (262)
T TIGR02640 76 HDQFIHNVVKLEDIVRQNWVDNRLTLAV-REGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRV 154 (262)
T ss_pred HHHHHHHhhhhhcccceeecCchHHHHH-HcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEE
Confidence 000 00000000000000111111 23579999999776666666665544321 135678
Q ss_pred EEecCcc
Q 044085 282 IVTTRNE 288 (1151)
Q Consensus 282 ivTtr~~ 288 (1151)
|+|+...
T Consensus 155 IaTsN~~ 161 (262)
T TIGR02640 155 IFTSNPV 161 (262)
T ss_pred EEeeCCc
Confidence 8888753
No 168
>PRK08116 hypothetical protein; Validated
Probab=97.31 E-value=0.00069 Score=72.34 Aligned_cols=102 Identities=25% Similarity=0.254 Sum_probs=58.8
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCce
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKF 250 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 250 (1151)
.+.++|..|+|||.||.++++... .+. ..++++++ .+++..+....... ...+. ..+.+.+.+-.
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~--~~~-~~v~~~~~------~~ll~~i~~~~~~~-~~~~~----~~~~~~l~~~d- 180 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELI--EKG-VPVIFVNF------PQLLNRIKSTYKSS-GKEDE----NEIIRSLVNAD- 180 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--HcC-CeEEEEEH------HHHHHHHHHHHhcc-ccccH----HHHHHHhcCCC-
Confidence 578999999999999999999543 332 44566653 33444444433211 11111 12334444433
Q ss_pred EEEEeCCCCCChhhHHh--hhccccCC-CCCcEEEEecCc
Q 044085 251 LLVLDDMWTENYDDWTN--LCKPFKAG-LPGSKIIVTTRN 287 (1151)
Q Consensus 251 LlVlDdvw~~~~~~~~~--l~~~l~~~-~~gs~iivTtr~ 287 (1151)
||||||+..+...+|.. +...+... ..|..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996443445543 33333322 245679999974
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0047 Score=68.45 Aligned_cols=150 Identities=12% Similarity=0.123 Sum_probs=91.7
Q ss_pred cccc-chhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc-------------------cCCCc
Q 044085 143 EVYG-REKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE-------------------HFPDF 202 (1151)
Q Consensus 143 ~~vg-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~ 202 (1151)
.++| -+..++.+.+.+.... -.....++|+.|+||||+|+.+.+..--.. .+||.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 4567 6667778888776543 345778999999999999999876321111 01121
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH----hcCCceEEEEeCCCCCChhhHHhhhccccCCCCC
Q 044085 203 RAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQ----LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPG 278 (1151)
Q Consensus 203 ~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~g 278 (1151)
. ++.... .....++..+.+... ..+++=++|+|++...+......+...+.....+
T Consensus 81 ~-~i~~~~-------------------~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 81 H-LVAPDG-------------------QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGG 140 (329)
T ss_pred E-Eecccc-------------------ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCC
Confidence 1 111100 001122222222111 2245567999999776667777788887766667
Q ss_pred cEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHHH
Q 044085 279 SKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFVR 317 (1151)
Q Consensus 279 s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~ 317 (1151)
+.+|++|.+ ..+........+.+.+.++++++..+.+..
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 777766654 445444444445899999999999887765
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.30 E-value=0.0091 Score=64.96 Aligned_cols=97 Identities=11% Similarity=0.167 Sum_probs=68.2
Q ss_pred CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCC
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDF 325 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 325 (1151)
+++-++|+|++...+...-..+...+..-..++.+|++|.. ..+...+.+..+.+.+.+++.+++.+.+....
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45679999999777766777777777766567766666654 55555555444589999999999988886531
Q ss_pred CCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 326 SAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 326 ~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
.. ...+..++..++|.|+.+..+.
T Consensus 186 -~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 -VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1336678999999998775544
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.29 E-value=0.0028 Score=71.50 Aligned_cols=180 Identities=15% Similarity=0.117 Sum_probs=95.0
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
.++.|.+..+++|.+.+...-. -+-...+-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f------i~i~~---- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF------IRVVG---- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE------EEEeh----
Confidence 4688999988888876642110 01123567889999999999999999984 22233 22211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-----------Chh---hHHhhhccccC--CCCC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-----------NYD---DWTNLCKPFKA--GLPG 278 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~---~~~~l~~~l~~--~~~g 278 (1151)
..+ ...... .....+...+.......+.+|++|++..- +.. .+..+...+.. ...+
T Consensus 213 s~l----~~k~~g----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 213 SEF----VQKYLG----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHH----HHHhcc----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111 111110 11111222233333467899999997421 001 11122222221 1235
Q ss_pred cEEEEecCcccccc-cc-c--CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 279 SKIIVTTRNEDVSS-MV-T--TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 279 s~iivTtr~~~v~~-~~-~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
..||+||...+..+ .+ . .....+.+...+.++..++|...... .......+ ..++++.+.|..
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcccC----HHHHHHHcCCCC
Confidence 67888887654332 22 1 12236888888888888888765532 22122222 344566666653
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.25 E-value=0.0019 Score=62.31 Aligned_cols=87 Identities=21% Similarity=0.099 Sum_probs=47.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCC-
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNK- 248 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k- 248 (1151)
..+.|+|++|+||||+|+.++.... ... ...+++..+........... ...................+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPG-GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCC-CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 4789999999999999999998433 221 13555555443332222211 011111111222222333444444433
Q ss_pred ceEEEEeCCCCC
Q 044085 249 KFLLVLDDMWTE 260 (1151)
Q Consensus 249 ~~LlVlDdvw~~ 260 (1151)
..+|++|++...
T Consensus 79 ~~viiiDei~~~ 90 (148)
T smart00382 79 PDVLILDEITSL 90 (148)
T ss_pred CCEEEEECCccc
Confidence 499999999764
No 173
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.24 E-value=0.0019 Score=73.27 Aligned_cols=159 Identities=15% Similarity=0.124 Sum_probs=86.2
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
.++.|.+..+++|.+.+.-.-.. +-...+-+.++|++|+|||++|+.+++ .....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~--el~~~f------i~V~~s--- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVAN--ETSATF------LRVVGS--- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH--hhCCCE------EEEecc---
Confidence 45789999998888876421100 112345678999999999999999999 333333 222211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-----------Chhh---HHhhhccccC--CCCC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-----------NYDD---WTNLCKPFKA--GLPG 278 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~---~~~l~~~l~~--~~~g 278 (1151)
++.. ... ..........+.....+.+.+|+||++..- +... ...+...+.. ...+
T Consensus 252 -eL~~----k~~----Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 -ELIQ----KYL----GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hhhh----hhc----chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1111 110 001111222222233457889999987320 0000 1112211211 1235
Q ss_pred cEEEEecCccccccc-cc---CCCceeecCCCChhhhHHHHHHhhc
Q 044085 279 SKIIVTTRNEDVSSM-VT---TPSAAYSLENLLRDDCLSIFVRHSL 320 (1151)
Q Consensus 279 s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~ 320 (1151)
.+||+||...+.... +. .....+.+...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876543322 11 1123788999999999999987763
No 174
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.21 E-value=0.0041 Score=78.26 Aligned_cols=159 Identities=19% Similarity=0.221 Sum_probs=82.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh---ccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE---EHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
+.++||+.+++++++.|..... .-+.++|++|+|||++|+.+.....-. ....+..+|.. +...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH-
Confidence 4699999999999999976431 245589999999999999998843111 01112233321 11111
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHh-c-CCceEEEEeCCCCCC-------hhhHHhhhccccCCCCCcEEEEecCccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQL-K-NKKFLLVLDDMWTEN-------YDDWTNLCKPFKAGLPGSKIIVTTRNED 289 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdvw~~~-------~~~~~~l~~~l~~~~~gs~iivTtr~~~ 289 (1151)
+. ......+.+.....+...+ + +++.+|++|++..-. ..+...+..+....+. -++|-+|-...
T Consensus 241 ---~a---~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~-i~~IgaTt~~e 313 (852)
T TIGR03346 241 ---IA---GAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE-LHCIGATTLDE 313 (852)
T ss_pred ---hh---cchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc-eEEEEeCcHHH
Confidence 10 0001112222222222233 2 468999999994210 0112223333222222 33444443332
Q ss_pred cc------ccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 290 VS------SMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 290 v~------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
.. ......-+.+.+...+.++...++....
T Consensus 314 ~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 314 YRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 21 1111111268899899999999887653
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.003 Score=69.91 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=89.0
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
....+.|+|..|.|||.|++++.+ ....+.++. ..+.++ .+....+++..+.. .-.+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a-~v~y~~----se~f~~~~v~a~~~--------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNA-RVVYLT----SEDFTNDFVKALRD--------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCc-eEEecc----HHHHHHHHHHHHHh--------hhHHHHHHhh--
Confidence 456899999999999999999999 455555332 333333 23333444433321 2234455555
Q ss_pred CceEEEEeCCCCCC-hhhH-HhhhccccCC-CCCcEEEEecCcc---------cccccccCCCceeecCCCChhhhHHHH
Q 044085 248 KKFLLVLDDMWTEN-YDDW-TNLCKPFKAG-LPGSKIIVTTRNE---------DVSSMVTTPSAAYSLENLLRDDCLSIF 315 (1151)
Q Consensus 248 k~~LlVlDdvw~~~-~~~~-~~l~~~l~~~-~~gs~iivTtr~~---------~v~~~~~~~~~~~~l~~L~~~~~~~lf 315 (1151)
.-=++++||++--. .+.| +++...|..- ..|-.||+|++.. ++...+...- ++++.+.+.+....++
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl-~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGL-VVEIEPPDDETRLAIL 253 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhcee-EEeeCCCCHHHHHHHH
Confidence 34488899995411 1122 2333333321 2344899999653 2223333333 8999999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHHcCC
Q 044085 316 VRHSLGRTDFSAHQYLSEIGEKIVDKCNG 344 (1151)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 344 (1151)
.+++....- ..++ +++.-|++....
T Consensus 254 ~kka~~~~~-~i~~---ev~~~la~~~~~ 278 (408)
T COG0593 254 RKKAEDRGI-EIPD---EVLEFLAKRLDR 278 (408)
T ss_pred HHHHHhcCC-CCCH---HHHHHHHHHhhc
Confidence 887643322 2222 444445544433
No 176
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.17 E-value=0.0043 Score=71.57 Aligned_cols=167 Identities=16% Similarity=0.183 Sum_probs=89.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccC----CCceEEEEeCC
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF----PDFRAWAYVSE 210 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f----~~~~~wv~vs~ 210 (1151)
.++.|.+..+++|.+.+...-.. +-...+-+.++|++|+|||++|+.+++... ..+ .....|+.++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~--~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLA--QRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhc--cccccccCCceeEEeccc
Confidence 45778999999888876421100 112345688999999999999999999432 221 02334555443
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCCC-------hhh-----HHhhhccccCC--
Q 044085 211 DFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTEN-------YDD-----WTNLCKPFKAG-- 275 (1151)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~-------~~~-----~~~l~~~l~~~-- 275 (1151)
. ++... .... .......+....++.. .+++.+|++|++..-- ..+ ..++...+...
T Consensus 260 ~----eLl~k----yvGe-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 260 P----ELLNK----YVGE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred h----hhccc----ccch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 2 11110 0000 0001111112222221 3578999999995310 011 12232222221
Q ss_pred CCCcEEEEecCcccccc-ccc---CCCceeecCCCChhhhHHHHHHhh
Q 044085 276 LPGSKIIVTTRNEDVSS-MVT---TPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 276 ~~gs~iivTtr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
..+..||.||...+..+ .+. .....+.+...+.++..++|..+.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445666775544322 221 112368999999999999998875
No 177
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.16 E-value=0.014 Score=63.60 Aligned_cols=94 Identities=10% Similarity=0.054 Sum_probs=67.6
Q ss_pred CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCC
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDF 325 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 325 (1151)
+++=++|+|++...+......+...+..-.+++.+|++|.+ ..+.....+..+.+.+.+++++++.+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~-~--- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS-A--- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc-c---
Confidence 55668889999887778888888888776667777666655 455555444445899999999999988876531 1
Q ss_pred CCCchHHHHHHHHHHHcCCChhHH
Q 044085 326 SAHQYLSEIGEKIVDKCNGSPLAA 349 (1151)
Q Consensus 326 ~~~~~~~~~~~~i~~~c~g~Plai 349 (1151)
.+ ..+...+..++|.|..+
T Consensus 182 --~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 --EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred --Ch---HHHHHHHHHcCCCHHHH
Confidence 11 23556788899999644
No 178
>CHL00176 ftsH cell division protein; Validated
Probab=97.15 E-value=0.0059 Score=73.11 Aligned_cols=179 Identities=17% Similarity=0.197 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHH---hcCCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLL---RRDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
.+++|.++.++++.+.+ ..... -+....+-|.++|++|+|||++|+.+++.. ... |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p------~i~is~s---- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP------FFSISGS---- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC------eeeccHH----
Confidence 46888887666655543 32211 011224568899999999999999998842 222 2333311
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC----------ChhhH----HhhhccccC--CCCCc
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE----------NYDDW----TNLCKPFKA--GLPGS 279 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~----------~~~~~----~~l~~~l~~--~~~gs 279 (1151)
++.. ... ..........+.......+.+|++||+..- ....+ ..+...+.. ...+-
T Consensus 251 ~f~~----~~~----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 251 EFVE----MFV----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHHH----Hhh----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 1110 000 001122233344445678899999999421 01122 222222221 23455
Q ss_pred EEEEecCcccccc-ccc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044085 280 KIIVTTRNEDVSS-MVT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS 345 (1151)
Q Consensus 280 ~iivTtr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 345 (1151)
.||.||...+..+ .+. .....+.+...+.++-.++++.++-... ..+ ......+++++.|.
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LSP--DVSLELIARRTPGF 387 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cch--hHHHHHHHhcCCCC
Confidence 6777776644322 121 1123788888888888888888764311 111 13346677787773
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.14 E-value=0.0055 Score=60.01 Aligned_cols=138 Identities=17% Similarity=0.192 Sum_probs=79.6
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc------------------cCCCceEEEE
Q 044085 146 GREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE------------------HFPDFRAWAY 207 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~f~~~~~wv~ 207 (1151)
|.++..+.|.+.+..+. -...+.++|+.|+||+|+|..+.+..--.. ..+| ..|+.
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD-FIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT-EEEEE
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc-eEEEe
Confidence 55667777888776653 234688999999999999999877321111 1212 22332
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEE
Q 044085 208 VSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKII 282 (1151)
Q Consensus 208 vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii 282 (1151)
-.... ..-..++.. .+...+ .+++=++|+||+...+...+..+...+.....++++|
T Consensus 75 ~~~~~-----------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 75 PDKKK-----------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTTSS-----------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ccccc-----------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 22110 011222222 233332 2456689999998888889999998888887888988
Q ss_pred EecCccc-ccccccCCCceeecCCCC
Q 044085 283 VTTRNED-VSSMVTTPSAAYSLENLL 307 (1151)
Q Consensus 283 vTtr~~~-v~~~~~~~~~~~~l~~L~ 307 (1151)
++|++.. +.....+..+.+.+++++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8887653 444444444467766653
No 180
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0055 Score=69.56 Aligned_cols=149 Identities=18% Similarity=0.142 Sum_probs=86.7
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCce
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKF 250 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 250 (1151)
++.|.|+.++||||+++.+... +.+..+++..-+......-+.+... .+...-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~------~~~~~iy~~~~d~~~~~~~l~d~~~----------------~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG------LLEEIIYINFDDLRLDRIELLDLLR----------------AYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh------CCcceEEEEecchhcchhhHHHHHH----------------HHHHhhccCCc
Confidence 9999999999999999666652 2122344443322111111111111 11111112789
Q ss_pred EEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcccc-----cccccCCCceeecCCCChhhhHHHHHHhhcCCCCC
Q 044085 251 LLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDV-----SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDF 325 (1151)
Q Consensus 251 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 325 (1151)
.|+||.| .....|......+.+..+. +|++|+-+... +....+....+++-||+-.|...+-...+
T Consensus 97 yifLDEI--q~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~------ 167 (398)
T COG1373 97 YIFLDEI--QNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI------ 167 (398)
T ss_pred eEEEecc--cCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc------
Confidence 9999999 5567899988888887655 88888876543 33333333478999999999766432000
Q ss_pred CCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 326 SAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 326 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
..... +..-+-.-..||.|-++..-
T Consensus 168 -~~~~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 168 -EPSKL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred -chhHH-HHHHHHHHHhCCCcHHHhCc
Confidence 00011 11333344678888776543
No 181
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.013 Score=63.76 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=102.3
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh------------------ccCCCceEEEEeCCC
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE------------------EHFPDFRAWAYVSED 211 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~------------------~~f~~~~~wv~vs~~ 211 (1151)
..+++.+.+..+. -...+-++|+.|+||+++|+.+..-.--. +..|| ..|+.-...
T Consensus 11 ~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p~~~ 84 (319)
T PRK06090 11 VWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKPEKE 84 (319)
T ss_pred HHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEecCcC
Confidence 4455666665443 34578899999999999999986622100 01112 112211100
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecC
Q 044085 212 FDAVGITKVILQAAVGSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTR 286 (1151)
Q Consensus 212 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr 286 (1151)
...-..++.. .+.+.+ .+++=++|+|++...+......+...+..-.+++.+|++|.
T Consensus 85 -----------------~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 85 -----------------GKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred -----------------CCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 0011122221 222222 24456889999987777888888888877666677666555
Q ss_pred -cccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 287 -NEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 287 -~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
...+.....+..+.+.+.+++++++.+.+.... . . .+..++..++|.|+.+..+
T Consensus 147 ~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 147 NQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c-------hHHHHHHHcCCCHHHHHHH
Confidence 455655555555589999999999998886531 0 0 2356788999999977655
No 182
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.13 E-value=0.0005 Score=66.30 Aligned_cols=102 Identities=24% Similarity=0.238 Sum_probs=71.5
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEcccccccccchhh-hcCCCCcEEecccccccccccc--ccccCCccCeee
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESV-STLYNLQTLILERCYRLKKLFP--DIGNLTNLRHLK 632 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~ 632 (1151)
.....+||++|.+..++ .|..++.|.+|.|.+|+|+.+-..+ ..+++|++|.|.+| .+..+.. .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 44567888888877764 3778888889999999998885444 45577999999888 5544432 367788888888
Q ss_pred cCCCCccccCc----ccccCccCCCccCeeEe
Q 044085 633 NSHSNLFEEMP----LRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 633 l~~~~~~~~~p----~~i~~L~~L~~L~~~~~ 660 (1151)
+-+|... .-. .-+.++++|++|++..+
T Consensus 120 ll~Npv~-~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVE-HKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchh-cccCceeEEEEecCcceEeehhhh
Confidence 8888732 221 12567778888765544
No 183
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.12 E-value=9.6e-05 Score=74.03 Aligned_cols=85 Identities=25% Similarity=0.233 Sum_probs=63.4
Q ss_pred CCCCcccEEEecCcccc-----ccCccccCCCcccEEEccccccc----cc-------chhhhcCCCCcEEecccccccc
Q 044085 553 PRLRRLRVLSLCGYWIL-----QLPNDIGELKHLRYLEFSRTAIE----VL-------PESVSTLYNLQTLILERCYRLK 616 (1151)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~Ls~n~i~----~l-------p~~i~~L~~L~~L~L~~~~~l~ 616 (1151)
..+..+..++||||.|. .+...|.+-.+|+..+++.-... .+ .+.+-+|++|+..+|+.|-.-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34788999999999875 35567778889999999863221 23 3456788999999999985444
Q ss_pred ccccc----cccCCccCeeecCCCC
Q 044085 617 KLFPD----IGNLTNLRHLKNSHSN 637 (1151)
Q Consensus 617 ~lp~~----~~~L~~L~~L~l~~~~ 637 (1151)
..|+. +++-+.|.||.+++|.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCC
Confidence 44433 6778899999999887
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.12 E-value=0.0051 Score=63.47 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=74.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeC-----C-----CC
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVS-----E-----DF 212 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs-----~-----~~ 212 (1151)
.+.++......+..++.+. .+|.++|.+|+|||+||.++..+.-....| +. +.++-+ + +-
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~-~k-IiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDV-DR-IIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCe-eE-EEEeCCCCCchhhhCcCCC
Confidence 4567888888888888653 289999999999999999988753223445 33 222211 1 01
Q ss_pred CHHH----HHHHHHHHhcCCCCCcchHHHH----H----HHHHHhcCCce---EEEEeCCCCCChhhHHhhhccccCCCC
Q 044085 213 DAVG----ITKVILQAAVGSVDVNDLNLLQ----L----QLENQLKNKKF---LLVLDDMWTENYDDWTNLCKPFKAGLP 277 (1151)
Q Consensus 213 ~~~~----~~~~i~~~~~~~~~~~~~~~~~----~----~l~~~l~~k~~---LlVlDdvw~~~~~~~~~l~~~l~~~~~ 277 (1151)
+..+ .++-+...+..-......+... . .--.++++..+ +||+|++...+..+...+...+ +.
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~ 202 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GE 202 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CC
Confidence 1111 1122222221000011111110 0 01235666655 9999999776665555555444 36
Q ss_pred CcEEEEecCccc
Q 044085 278 GSKIIVTTRNED 289 (1151)
Q Consensus 278 gs~iivTtr~~~ 289 (1151)
+|++|+|--..+
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 899999876543
No 185
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.11 E-value=0.00038 Score=83.89 Aligned_cols=112 Identities=23% Similarity=0.202 Sum_probs=83.8
Q ss_pred cCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccCccccCCCcccEEEccccccccc--chhhh
Q 044085 522 HEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVL--PESVS 599 (1151)
Q Consensus 522 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~l--p~~i~ 599 (1151)
..+|.||+|.+.+.. .....+.....++++|+.||+|+++++.+ .++++|++|+.|.+++=.+..- -..+-
T Consensus 145 ~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred hhCcccceEEecCce------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 357889999887643 11233556778999999999999999988 7789999999999998777743 24577
Q ss_pred cCCCCcEEeccccccccccc-------cccccCCccCeeecCCCCcccc
Q 044085 600 TLYNLQTLILERCYRLKKLF-------PDIGNLTNLRHLKNSHSNLFEE 641 (1151)
Q Consensus 600 ~L~~L~~L~L~~~~~l~~lp-------~~~~~L~~L~~L~l~~~~~~~~ 641 (1151)
.|++|++||+|..... ..+ +.-..||+||.||.|++.+...
T Consensus 218 ~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred cccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 8999999999986332 222 1123589999999998875433
No 186
>PRK08181 transposase; Validated
Probab=97.11 E-value=0.0017 Score=68.86 Aligned_cols=100 Identities=21% Similarity=0.124 Sum_probs=55.0
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCce
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKF 250 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 250 (1151)
-+.++|++|+|||.||..+.+. ..... ..+.|+.+ .++...+..... ....+.. .+.+. +.=
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~--a~~~g-~~v~f~~~------~~L~~~l~~a~~----~~~~~~~----l~~l~-~~d 169 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLA--LIENG-WRVLFTRT------TDLVQKLQVARR----ELQLESA----IAKLD-KFD 169 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHH--HHHcC-CceeeeeH------HHHHHHHHHHHh----CCcHHHH----HHHHh-cCC
Confidence 5899999999999999999984 33333 34555543 344444432211 1122221 22222 345
Q ss_pred EEEEeCCCCCChhhHH--hhhccccCCCCCcEEEEecCcc
Q 044085 251 LLVLDDMWTENYDDWT--NLCKPFKAGLPGSKIIVTTRNE 288 (1151)
Q Consensus 251 LlVlDdvw~~~~~~~~--~l~~~l~~~~~gs~iivTtr~~ 288 (1151)
|||+||+.......|. .+...+.....+..+||||...
T Consensus 170 LLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 9999999543333332 3444433322224688888753
No 187
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.10 E-value=2.6e-05 Score=88.39 Aligned_cols=111 Identities=20% Similarity=0.149 Sum_probs=90.8
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccc-cccCCccCeeecC
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLKNS 634 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~l~ 634 (1151)
..|.+.+.+.|.+..+..++.-+++|+.|||++|+++..- .+..|++|++|||++| .+..+|.- ...+. |..|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeeec
Confidence 4578888888999888889999999999999999999874 7999999999999999 77777763 34454 9999999
Q ss_pred CCCccccCcccccCccCCCccCeeEeccCCCCCcccc
Q 044085 635 HSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLREL 671 (1151)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L 671 (1151)
+|. +..+ .++.+|.+|+.|++..|-....+.+.-|
T Consensus 241 nN~-l~tL-~gie~LksL~~LDlsyNll~~hseL~pL 275 (1096)
T KOG1859|consen 241 NNA-LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPL 275 (1096)
T ss_pred ccH-HHhh-hhHHhhhhhhccchhHhhhhcchhhhHH
Confidence 998 4443 6789999999999988866655444333
No 188
>PRK08118 topology modulation protein; Reviewed
Probab=97.06 E-value=0.00029 Score=69.45 Aligned_cols=34 Identities=35% Similarity=0.603 Sum_probs=27.2
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhh-ccCCCceEE
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVE-EHFPDFRAW 205 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~w 205 (1151)
.|.|+|++|+||||||+.+++..... -+| |..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~l-D~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHL-DALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceec-chhhc
Confidence 58899999999999999999965443 345 66665
No 189
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0052 Score=76.95 Aligned_cols=45 Identities=24% Similarity=0.400 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++++||+.+++++++.|..... .-+.++|.+|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHH
Confidence 4699999999999999976532 34569999999999999999884
No 190
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.037 Score=56.23 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=105.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeC-CCCCHHHHHHHHHHHhcCCCCCc----chHHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVS-EDFDAVGITKVILQAAVGSVDVN----DLNLLQLQLEN 243 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs-~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~l~~ 243 (1151)
-+++.++|.-|.|||.+++....... + +.++-|.+. ...+...+...|...+... ... ..+...+.+..
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~--~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~-p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLN--E---DQVAVVVIDKPTLSDATLLEAIVADLESQ-PKVNVNAVLEQIDRELAA 124 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcC--C---CceEEEEecCcchhHHHHHHHHHHHhccC-ccchhHHHHHHHHHHHHH
Confidence 35899999999999999995444211 1 222224443 4456777888888877742 122 23334444544
Q ss_pred Hh-cCCc-eEEEEeCCCCCChhhHHhhhccccCCCCCc---EEEEecCcc--------cccccccCCCceeecCCCChhh
Q 044085 244 QL-KNKK-FLLVLDDMWTENYDDWTNLCKPFKAGLPGS---KIIVTTRNE--------DVSSMVTTPSAAYSLENLLRDD 310 (1151)
Q Consensus 244 ~l-~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs---~iivTtr~~--------~v~~~~~~~~~~~~l~~L~~~~ 310 (1151)
.. +++| ..+++||.........+.++....-...++ +|+..-..+ ............|.+.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 44 4677 899999997665566666554332221222 233332211 1111111111138999999999
Q ss_pred hHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 311 CLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 311 ~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
...++..+.-+... ..+---.+....|..+..|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 98888877644422 11111235677899999999999987754
No 191
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.01 E-value=0.0013 Score=65.35 Aligned_cols=100 Identities=22% Similarity=0.222 Sum_probs=51.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
.-+.|+|..|+|||.||..+.+.... .. ..+.|+.+ .+++.. +.........+. +.+.+. +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~-~g--~~v~f~~~------~~L~~~----l~~~~~~~~~~~----~~~~l~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIR-KG--YSVLFITA------SDLLDE----LKQSRSDGSYEE----LLKRLK-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH-TT----EEEEEH------HHHHHH----HHCCHCCTTHCH----HHHHHH-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhcc-CC--cceeEeec------Cceecc----ccccccccchhh----hcCccc-cc
Confidence 46899999999999999999985322 22 34666654 233333 331111112222 223333 34
Q ss_pred eEEEEeCCCCCChhhHHh--hhccccCCCCCcEEEEecCc
Q 044085 250 FLLVLDDMWTENYDDWTN--LCKPFKAGLPGSKIIVTTRN 287 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~~--l~~~l~~~~~gs~iivTtr~ 287 (1151)
=|+||||+-......|.. +...+........+||||..
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred cEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 577899997655555543 22222221112357888874
No 192
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.01 E-value=0.0037 Score=77.00 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=90.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
+.+.+|.++.+++|++++............++.++|++|+||||+|+.++. .....| .-+..+...+..++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~--~l~~~~----~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK--ATGRKY----VRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH--HhCCCE----EEEEcCCCCCHHHhccc
Confidence 356889999999999988742211112345789999999999999999998 333333 22334443333222111
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhh----HHhhhccccCC---------------CCCcEE
Q 044085 221 ILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDD----WTNLCKPFKAG---------------LPGSKI 281 (1151)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~----~~~l~~~l~~~---------------~~gs~i 281 (1151)
-.... ......+...+.. .....-+++||.+..-.... .+.+...+... -...-+
T Consensus 395 ~~~~~-----g~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 395 RRTYI-----GSMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hhccC-----CCCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 00000 1111222223322 12234578999995432111 23333332211 123445
Q ss_pred EEecCcccccccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 282 IVTTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 282 ivTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
|.|+.+..+....-..-.++.+.+++++|-.++.+++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 56666554443332222378899999888887776654
No 193
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.97 E-value=0.011 Score=70.03 Aligned_cols=187 Identities=17% Similarity=0.132 Sum_probs=95.9
Q ss_pred CCccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDL------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
-++++|.++.++++.+++..-.. .+....+-+.++|++|+|||++|+.+++.. ...| +.++..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~~------~~i~~~--- 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVPF------FSISGS--- 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCe------eeccHH---
Confidence 35788988877666654431110 011233458899999999999999999842 2222 333211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC----------hhhHHh----hhccccC--CCCC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN----------YDDWTN----LCKPFKA--GLPG 278 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~----l~~~l~~--~~~g 278 (1151)
++... .. ......+...+.......+.+|++||+..-. ...+.. +...+.. ...+
T Consensus 123 -~~~~~----~~----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 123 -DFVEM----FV----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred -HHHHH----Hh----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 11111 10 0111222233333344677999999994310 111222 2222211 2234
Q ss_pred cEEEEecCcccc-ccccc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC-hhHHHHH
Q 044085 279 SKIIVTTRNEDV-SSMVT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS-PLAAKTL 352 (1151)
Q Consensus 279 s~iivTtr~~~v-~~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 352 (1151)
-.||.||...+. -..+. .....+.+...+.++-.++|......... ... .....+++.+.|. +-.|..+
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCCCHHHHHHH
Confidence 566777765432 22121 11237888888888888888776533211 111 1234778888774 3333333
No 194
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.95 E-value=0.0077 Score=74.66 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=71.5
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++|.+..++.+.+.+.....+ ......++.++|+.|+|||+||+.++... + ...+.++.++-.+...+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~-~~~~~~d~se~~~~~~~- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----G-VHLERFDMSEYMEKHTV- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----c-CCeEEEeCchhhhcccH-
Confidence 45789999999988887753211 11234568899999999999999998832 2 33455555442221111
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCc-eEEEEeCCCCCChhhHHhhhccccCC
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKK-FLLVLDDMWTENYDDWTNLCKPFKAG 275 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~ 275 (1151)
...++........+ ....+.+.++.++ -+++||++...+.+.+..+...+..+
T Consensus 527 ---~~lig~~~gyvg~~-~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g 580 (731)
T TIGR02639 527 ---SRLIGAPPGYVGFE-QGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYA 580 (731)
T ss_pred ---HHHhcCCCCCcccc-hhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccC
Confidence 11122111110111 1122334444444 59999999877777777777666543
No 195
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0061 Score=70.54 Aligned_cols=166 Identities=20% Similarity=0.203 Sum_probs=92.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
+.+-+|.++.+++|+++|.-..-...-+-+++.+||++|||||.|++.++. .....| +-+++++-.|..+|-.-
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf----vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF----VRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE----EEEecCccccHHHhccc
Confidence 345679999999999998643221223447999999999999999999999 566666 33556665555444210
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCCh----hhHHhhhccccCCC-------------CCcEE--
Q 044085 221 ILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENY----DDWTNLCKPFKAGL-------------PGSKI-- 281 (1151)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~----~~~~~l~~~l~~~~-------------~gs~i-- 281 (1151)
= +..-..-...+.+.+ ...+.+.-+++||.+..... +--.++...+.+.. .=|+|
T Consensus 396 R-----RTYIGamPGrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmF 469 (782)
T COG0466 396 R-----RTYIGAMPGKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMF 469 (782)
T ss_pred c-----ccccccCChHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEE
Confidence 0 000001111111222 22345788999999953211 01112222221110 11333
Q ss_pred EEecCccc-ccccc-cCCCceeecCCCChhhhHHHHHHhh
Q 044085 282 IVTTRNED-VSSMV-TTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 282 ivTtr~~~-v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
|.|..+-+ ++... .... ++++.+-+++|-.++-+++.
T Consensus 470 iaTANsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 470 IATANSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EeecCccccCChHHhccee-eeeecCCChHHHHHHHHHhc
Confidence 33444333 43322 2233 89999999999887776654
No 196
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.91 E-value=0.024 Score=62.53 Aligned_cols=180 Identities=14% Similarity=0.099 Sum_probs=102.9
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCC--Cc-----eEEEEeCCCCCHHHHHHHHH
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFP--DF-----RAWAYVSEDFDAVGITKVIL 222 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~--~~-----~~wv~vs~~~~~~~~~~~i~ 222 (1151)
.-+++.+.+..+. -...+.+.|+.|+||+++|..++.-.--...-. .| ..++.....+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 4456666665543 345788999999999999998766321000000 00 000000111111000
Q ss_pred HHhcCCC--CCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccccc
Q 044085 223 QAAVGSV--DVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSSMV 294 (1151)
Q Consensus 223 ~~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~ 294 (1151)
.... ..-..++..+ +.+.+ .+++=++|+|++...+......+...+..-..++.+|++|.+ ..+...+
T Consensus 80 ---~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATL 155 (334)
T ss_pred ---ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 0000 0111222222 22222 256679999999877777888888888776667776666654 5565554
Q ss_pred cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 295 TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 295 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
.+..+.+.+.+++++++.+.+.... + .+ .+.+..++..++|.|..+..+
T Consensus 156 rSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 156 RSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4444488999999999988776532 1 11 134678899999999655433
No 197
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.89 E-value=0.0033 Score=68.38 Aligned_cols=122 Identities=14% Similarity=0.163 Sum_probs=70.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 146 GREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
++....+...+++..... +...+-+.++|..|+|||.||.++++... ..- ..+.++++. +++.++....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g-~~v~~~~~~------~l~~~lk~~~ 203 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA--KKG-VSSTLLHFP------EFIRELKNSI 203 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEEEHH------HHHHHHHHHH
Confidence 455555556666654321 11335689999999999999999999543 222 345666553 3444444433
Q ss_pred cCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHh--hhccc-cCC-CCCcEEEEecCc
Q 044085 226 VGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTN--LCKPF-KAG-LPGSKIIVTTRN 287 (1151)
Q Consensus 226 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~~l-~~~-~~gs~iivTtr~ 287 (1151)
.. .... ..+. .+ .+-=||||||+.-+....|.. +...+ ... ..+-.+|+||..
T Consensus 204 ~~----~~~~---~~l~-~l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 204 SD----GSVK---EKID-AV-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred hc----CcHH---HHHH-Hh-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 21 1122 2222 22 246689999997666677753 44433 322 245568888863
No 198
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.88 E-value=0.0057 Score=63.85 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=56.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
..+.++|.+|+|||+||.++++... ..- ..+++++ ..++...+-.... ...... ..+.+.+. +.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~--~~g-~~v~~it------~~~l~~~l~~~~~--~~~~~~----~~~l~~l~-~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL--LRG-KSVLIIT------VADIMSAMKDTFS--NSETSE----EQLLNDLS-NV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--hcC-CeEEEEE------HHHHHHHHHHHHh--hccccH----HHHHHHhc-cC
Confidence 4688999999999999999999543 222 3455554 3344444333221 011111 12333344 35
Q ss_pred eEEEEeCCCCCChhhHHh--hhccccCCC-CCcEEEEecCc
Q 044085 250 FLLVLDDMWTENYDDWTN--LCKPFKAGL-PGSKIIVTTRN 287 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~~--l~~~l~~~~-~gs~iivTtr~ 287 (1151)
=+||+||+......+|+. +...+.... ..-.+||||..
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 588899997655566664 332332221 23457777763
No 199
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.88 E-value=0.009 Score=68.41 Aligned_cols=195 Identities=16% Similarity=0.194 Sum_probs=116.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
+++||.+.-...|...+.... -...-...|+.|+||||+|+.++... .|.-| ...+++..-..-+.|
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~Akal-------NC~~~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKAL-------NCENG-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHh-------cCCCC-CCCCcchhhhhhHhh
Confidence 467999999999999997764 22345678999999999999988732 11111 112222222222222
Q ss_pred HHHhc---------CCCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcE-EEEecCcccc
Q 044085 222 LQAAV---------GSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSK-IIVTTRNEDV 290 (1151)
Q Consensus 222 ~~~~~---------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~-iivTtr~~~v 290 (1151)
-..-. .....++..++.+.+... .+++-=+.|+|.|.-.....|..+..-+..--..-+ |+.||....+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 22100 001112222222221111 124455889999966666788887776665433444 5566666777
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
....-+..+.|.++.++.++....+..-+-. ...... .+....|++..+|...-...+-
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~-E~I~~e---~~aL~~ia~~a~Gs~RDalslL 221 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDK-EGINIE---EDALSLIARAAEGSLRDALSLL 221 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHh-cCCccC---HHHHHHHHHHcCCChhhHHHHH
Confidence 7666665569999999999988888776533 222222 2667778888888765444443
No 200
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.87 E-value=0.0055 Score=66.96 Aligned_cols=99 Identities=19% Similarity=0.189 Sum_probs=61.9
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCc-eEEEEeCCC-CCHHHHHHHHHHHhcCC-
Q 044085 152 EALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDF-RAWAYVSED-FDAVGITKVILQAAVGS- 228 (1151)
Q Consensus 152 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~~wv~vs~~-~~~~~~~~~i~~~~~~~- 228 (1151)
.++++.+..-. .-.-+.|+|.+|+|||||++.+++. +....++. .+|+.+.+. .++.++.+.+...+...
T Consensus 121 ~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 121 MRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred HhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 44677665432 2235689999999999999999884 33333354 478788754 46777888887766622
Q ss_pred CCCcchHH-----HHHHHHHHh--cCCceEEEEeCC
Q 044085 229 VDVNDLNL-----LQLQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 229 ~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 257 (1151)
.+...... ....+-+++ ++++.+||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11111111 111222222 589999999999
No 201
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.86 E-value=0.00035 Score=84.13 Aligned_cols=113 Identities=26% Similarity=0.205 Sum_probs=79.2
Q ss_pred hhhhhhcCCCCcccEEEecCcccc--ccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccc--cc
Q 044085 546 NLVFHVIPRLRRLRVLSLCGYWIL--QLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLF--PD 621 (1151)
Q Consensus 546 ~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~ 621 (1151)
..+...-..+|.|+.|.+++-.+. ++..-..++++|++||+|+++|+.+ ..+++|++||+|.+++= .+..-+ ..
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~ 215 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLID 215 (699)
T ss_pred cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHH
Confidence 334445567899999999986543 3334457889999999999999999 78999999999999763 232211 34
Q ss_pred cccCCccCeeecCCCCccccC--c----ccccCccCCCccCeeEe
Q 044085 622 IGNLTNLRHLKNSHSNLFEEM--P----LRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 622 ~~~L~~L~~L~l~~~~~~~~~--p----~~i~~L~~L~~L~~~~~ 660 (1151)
+.+|++|++||+|........ . ..-..|++|+.|+.+..
T Consensus 216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 778999999999986632211 1 11224677777765543
No 202
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.04 Score=58.60 Aligned_cols=190 Identities=15% Similarity=0.138 Sum_probs=105.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
.++=|-++.+++|.+.+.-.-.+ +-..++=|.++|++|.|||-||++|++ +....| +.|...
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtF------IrvvgS--- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATF------IRVVGS--- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceE------EEeccH---
Confidence 35668898888888876432111 234566788999999999999999999 444445 444432
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhc-CCceEEEEeCCCCC-----------Chhh---HHhhhccccCCC--C
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLK-NKKFLLVLDDMWTE-----------NYDD---WTNLCKPFKAGL--P 277 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~-----------~~~~---~~~l~~~l~~~~--~ 277 (1151)
++.+..+ + +-..+.+.+.+.-+ ..+..|.+|.+..- +.+. .-++...+..+. .
T Consensus 220 -ElVqKYi----G-----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 -ELVQKYI----G-----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred -HHHHHHh----c-----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 1222211 1 11123333333333 46788889988421 1111 122333333322 3
Q ss_pred CcEEEEecCcccccccc--c--CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC----hhHH
Q 044085 278 GSKIIVTTRNEDVSSMV--T--TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS----PLAA 349 (1151)
Q Consensus 278 gs~iivTtr~~~v~~~~--~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~----Plai 349 (1151)
.-|||..|...++.+.. . .-.+.+++..-+.+.-.++|+-++-. -.....-+++ .+++.|.|. --|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk-M~l~~dvd~e----~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK-MNLADDVDLE----LLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh-ccCccCcCHH----HHHHhcCCCchHHHHHH
Confidence 57899888776664322 1 22336777755555556777766632 2222333343 455566655 3566
Q ss_pred HHHHHHhc
Q 044085 350 KTLGGLLR 357 (1151)
Q Consensus 350 ~~~~~~L~ 357 (1151)
.+=||+++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 77788874
No 203
>PRK06526 transposase; Provisional
Probab=96.86 E-value=0.0012 Score=69.65 Aligned_cols=100 Identities=21% Similarity=0.146 Sum_probs=52.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
.-+.|+|++|+|||+||..+.+... ..- ..+.|+ +..++...+..... ... ....+.. + .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~--~~g-~~v~f~------t~~~l~~~l~~~~~----~~~---~~~~l~~-l-~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC--QAG-HRVLFA------TAAQWVARLAAAHH----AGR---LQAELVK-L-GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH--HCC-Cchhhh------hHHHHHHHHHHHHh----cCc---HHHHHHH-h-ccC
Confidence 3589999999999999999988432 221 223332 23344444432211 111 1122322 2 234
Q ss_pred eEEEEeCCCCCChhhHH--hhhccccCC-CCCcEEEEecCcc
Q 044085 250 FLLVLDDMWTENYDDWT--NLCKPFKAG-LPGSKIIVTTRNE 288 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~~ 288 (1151)
-+||+||+.......|. .+...+... ..++ +|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 68999999543222222 233333221 1244 88888754
No 204
>PRK12377 putative replication protein; Provisional
Probab=96.84 E-value=0.0038 Score=65.32 Aligned_cols=101 Identities=17% Similarity=0.070 Sum_probs=56.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
..+.++|..|+|||+||.++++.. .... ..++++++. ++...+-..... ..... .+.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l--~~~g-~~v~~i~~~------~l~~~l~~~~~~---~~~~~----~~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL--LAKG-RSVIVVTVP------DVMSRLHESYDN---GQSGE----KFLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcC-CCeEEEEHH------HHHHHHHHHHhc---cchHH----HHHHHh-cCC
Confidence 468999999999999999999954 3333 345666543 344444332211 11111 122222 356
Q ss_pred eEEEEeCCCCCChhhHH--hhhccccCCC-CCcEEEEecCc
Q 044085 250 FLLVLDDMWTENYDDWT--NLCKPFKAGL-PGSKIIVTTRN 287 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~--~l~~~l~~~~-~gs~iivTtr~ 287 (1151)
=||||||+.......|. .+...+.... ..--+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 79999999544334453 3333333321 22346777763
No 205
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.84 E-value=0.0089 Score=74.58 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=84.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.+..+++|.+++...........+++.++|++|+|||++|+.+++. ....| .-+.++...+..++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~----~~i~~~~~~~~~~i~g-- 391 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKF----VRFSLGGVRDEAEIRG-- 391 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCe----EEEeCCCcccHHHHcC--
Confidence 458899999999998775332111123357899999999999999999984 33344 1223333323322211
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChh----hHHhhhccc--------cCC-------CCCcEEE
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYD----DWTNLCKPF--------KAG-------LPGSKII 282 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l--------~~~-------~~gs~ii 282 (1151)
. ...........+.+.+...- .++-+|+||++...... .-..+...+ .+. -.+.-+|
T Consensus 392 --~-~~~~~g~~~g~i~~~l~~~~-~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 392 --H-RRTYVGAMPGRIIQGLKKAK-TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred --C-CCceeCCCCchHHHHHHHhC-cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 0 00001111222233333332 23448899998542110 011222211 111 0233445
Q ss_pred EecCccc-ccccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 283 VTTRNED-VSSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 283 vTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
.||.... +.......-..+.+.+++.++-.+++.+..
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5655432 222222221278889999888877776543
No 206
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.81 E-value=0.06 Score=59.59 Aligned_cols=207 Identities=14% Similarity=0.137 Sum_probs=125.4
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHH-HHHhhchhhhccCCCceEEEEeCCC---CCHHHHHHHHH
Q 044085 147 REKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLA-QLVFNDVRVEEHFPDFRAWAYVSED---FDAVGITKVIL 222 (1151)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~~~~wv~vs~~---~~~~~~~~~i~ 222 (1151)
|.+..++|..||.+... .+|.|.|+.|+||+.|+ .++..+. +.+..+.+.+- .+.....+.++
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA 67 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLA 67 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHH
Confidence 56788999999987643 58999999999999999 7777743 33566665432 33455556666
Q ss_pred HHhc-CC------------------------CCCcchHH-H-------HHHHHH-------------------Hhc---C
Q 044085 223 QAAV-GS------------------------VDVNDLNL-L-------QLQLEN-------------------QLK---N 247 (1151)
Q Consensus 223 ~~~~-~~------------------------~~~~~~~~-~-------~~~l~~-------------------~l~---~ 247 (1151)
.+++ .+ .-.++.+. + ...|++ +|. .
T Consensus 68 ~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe 147 (431)
T PF10443_consen 68 SQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPE 147 (431)
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCc
Confidence 6654 11 00112221 1 111221 111 2
Q ss_pred CceEEEEeCCCCCC---------hhhHHhhhccccCCCCCcEEEEecCcccccccc----cCC-CceeecCCCChhhhHH
Q 044085 248 KKFLLVLDDMWTEN---------YDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSMV----TTP-SAAYSLENLLRDDCLS 313 (1151)
Q Consensus 248 k~~LlVlDdvw~~~---------~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~----~~~-~~~~~l~~L~~~~~~~ 313 (1151)
+|-+||+|+.-... ..+|..... .++-..||++|-+....... ... -+.+.|...+++.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 36799999984321 234443221 22456889888775544432 221 2378999999999999
Q ss_pred HHHHhhcCCCCC------------CC----CchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCH-HHHHHHHh
Q 044085 314 IFVRHSLGRTDF------------SA----HQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDP-KDWEDVLN 370 (1151)
Q Consensus 314 lf~~~~~~~~~~------------~~----~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~-~~w~~~~~ 370 (1151)
+..++.-..... .. .....+-....++..||==.-+..+++.++...++ +.-.++..
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 998877443110 00 01233455667888999999999999999876443 33334433
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.80 E-value=0.0012 Score=71.67 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=43.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR 194 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 194 (1151)
+++|.++.++++++++.....+.+...+++.++|++|+||||||+.+.+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999875532234567899999999999999999998553
No 208
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.80 E-value=0.0057 Score=61.46 Aligned_cols=131 Identities=17% Similarity=0.187 Sum_probs=63.6
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC------CCHHH---
Q 044085 146 GREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED------FDAVG--- 216 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~------~~~~~--- 216 (1151)
.+..+-...++.|... .++.+.|++|.|||.||.+..-+.-..++| +..+++.-.-. |-+-+
T Consensus 4 p~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~-~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEGEY-DKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT----SS------
T ss_pred CCCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhCCC-cEEEEEecCCCCccccccCCCCHHH
Confidence 3444555666666633 389999999999999999988766555777 76666643211 00000
Q ss_pred ----HHHHHHHHhcCCCCCcchHHHHHH------HHHHhcCC---ceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE
Q 044085 217 ----ITKVILQAAVGSVDVNDLNLLQLQ------LENQLKNK---KFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV 283 (1151)
Q Consensus 217 ----~~~~i~~~~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 283 (1151)
...-+...+..-......+.+.+. -..+++++ .-+||+|++.+....++..+.... +.|||||+
T Consensus 75 K~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~ 151 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIII 151 (205)
T ss_dssp ---TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEE
T ss_pred HHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEE
Confidence 011111111111111122221110 01234454 469999999777777777766543 46899999
Q ss_pred ecCcc
Q 044085 284 TTRNE 288 (1151)
Q Consensus 284 Ttr~~ 288 (1151)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 87644
No 209
>PRK07261 topology modulation protein; Provisional
Probab=96.80 E-value=0.0034 Score=62.19 Aligned_cols=23 Identities=39% Similarity=0.521 Sum_probs=20.3
Q ss_pred EEEEecCCCccHHHHHHHHhhch
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998743
No 210
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.79 E-value=0.0067 Score=76.38 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=78.0
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++|.+..++.+.+.+.....+ ......++.++|+.|+|||++|+.+.... ...- ...+.+..+.-.+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~-~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDE-DAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCC-CcEEEEechhhcccchH-
Confidence 46899999999999988764321 11224577899999999999999999832 1111 22333444432221111
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCc-eEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecC
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKK-FLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTR 286 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 286 (1151)
..+ ++.....-..++ ...+.+.++.++ .+|+||++...+...+..+...+..+. ..+-||+||.
T Consensus 641 ~~l---~g~~~g~~g~~~-~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn 716 (852)
T TIGR03346 641 ARL---IGAPPGYVGYEE-GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSN 716 (852)
T ss_pred HHh---cCCCCCccCccc-ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCC
Confidence 111 121111001100 122333333333 489999998777788888877765441 2344777776
Q ss_pred c
Q 044085 287 N 287 (1151)
Q Consensus 287 ~ 287 (1151)
.
T Consensus 717 ~ 717 (852)
T TIGR03346 717 L 717 (852)
T ss_pred c
Confidence 3
No 211
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.78 E-value=0.0085 Score=59.69 Aligned_cols=123 Identities=25% Similarity=0.362 Sum_probs=73.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 139 VDEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 139 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
++-..++|.+..++.+++-...--. +..---|.+||..|.|||.|++++.+ ++.+.... -|-|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr---LVEV~k~------- 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR---LVEVDKE------- 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe---EEEEcHH-------
Confidence 3345789999999988874332211 11223578999999999999999999 55555522 3334321
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCC-CCChhhHHhhhccccCCC---CCcEEEEecCcc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMW-TENYDDWTNLCKPFKAGL---PGSKIIVTTRNE 288 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw-~~~~~~~~~l~~~l~~~~---~gs~iivTtr~~ 288 (1151)
+..++..+.+.|+. ..+||.|..||.- ++.......++..+..+- +.-.++..|.++
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 01111122222221 4679999999994 334466777777776542 334455555443
No 212
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.77 E-value=0.0025 Score=65.51 Aligned_cols=35 Identities=29% Similarity=0.326 Sum_probs=28.7
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEe
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYV 208 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~v 208 (1151)
.++|+|..|+||||++..+..+ ....| +.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~--~~~~f-~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY--LRHKF-DHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh--hcccC-CEEEEEec
Confidence 5789999999999999999884 55788 77777654
No 213
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.72 E-value=0.0047 Score=77.03 Aligned_cols=135 Identities=17% Similarity=0.198 Sum_probs=75.2
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++|.+..++.+.+.+.....+ ......++.++|+.|+|||.+|+.+.... -... ...+-++++.-.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~-~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGE-QNLITINMSEFQEA---- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCC-cceEEEeHHHhhhh----
Confidence 46899999999999988653211 22345678999999999999999987732 1111 11222222221111
Q ss_pred HHHHHHhcCCC---CCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEe
Q 044085 219 KVILQAAVGSV---DVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVT 284 (1151)
Q Consensus 219 ~~i~~~~~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivT 284 (1151)
..+..-++... .......+.+.++ +...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~---~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVR---RKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHH---hCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11111112111 1111112223332 2445699999997767777777766665442 34556666
Q ss_pred cC
Q 044085 285 TR 286 (1151)
Q Consensus 285 tr 286 (1151)
|.
T Consensus 716 SN 717 (852)
T TIGR03345 716 SN 717 (852)
T ss_pred CC
Confidence 65
No 214
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.016 Score=65.09 Aligned_cols=146 Identities=15% Similarity=0.096 Sum_probs=88.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc-------------------cCCCce
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE-------------------HFPDFR 203 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~ 203 (1151)
.++|-+....++..+..... .....+-++|+.|+||||+|..+.+...-.. .. .-+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~d~ 76 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNH-PDF 76 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCC-Cce
Confidence 46777888888888887543 1233589999999999999999988432111 11 123
Q ss_pred EEEEeCCCCC---HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcE
Q 044085 204 AWAYVSEDFD---AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSK 280 (1151)
Q Consensus 204 ~wv~vs~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ 280 (1151)
..+..++... ..+..+++.+...... ..++.-++++|++...+.+.-..+...+......++
T Consensus 77 lel~~s~~~~~~i~~~~vr~~~~~~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 77 LELNPSDLRKIDIIVEQVRELAEFLSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EEecccccCCCcchHHHHHHHHHHhccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 4444444333 2223333333222100 035678999999977666666667666666667788
Q ss_pred EEEecCc-ccccccccCCCceeecCCCCh
Q 044085 281 IIVTTRN-EDVSSMVTTPSAAYSLENLLR 308 (1151)
Q Consensus 281 iivTtr~-~~v~~~~~~~~~~~~l~~L~~ 308 (1151)
+|++|.. ..+........+.+.+++.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 8888773 344444444444677776333
No 215
>PTZ00494 tuzin-like protein; Provisional
Probab=96.71 E-value=0.26 Score=54.18 Aligned_cols=168 Identities=10% Similarity=0.090 Sum_probs=102.5
Q ss_pred CCCCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHH
Q 044085 138 LVDEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 138 ~~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~ 217 (1151)
......+|.|+++-..+.+.|.+.+. ..++++.+.|.-|.||++|.+.+..... -..++|.|... ++-
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~------~paV~VDVRg~---EDt 434 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEG------VALVHVDVGGT---EDT 434 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcC------CCeEEEEecCC---cch
Confidence 34567899999999999998887653 4688999999999999999999888443 34567888765 445
Q ss_pred HHHHHHHhc-CCCC--CcchHHHHHH---HHHHhcCCceEEEEeCCCCCCh-hhHHhhhccccCCCCCcEEEEecCcccc
Q 044085 218 TKVILQAAV-GSVD--VNDLNLLQLQ---LENQLKNKKFLLVLDDMWTENY-DDWTNLCKPFKAGLPGSKIIVTTRNEDV 290 (1151)
Q Consensus 218 ~~~i~~~~~-~~~~--~~~~~~~~~~---l~~~l~~k~~LlVlDdvw~~~~-~~~~~l~~~l~~~~~gs~iivTtr~~~v 290 (1151)
++.+++.++ ...+ .+-++-+.+. -+....++.-+||+-==...+. ..+.+. ..+.....-+.|++---.+.+
T Consensus 435 LrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESL 513 (664)
T PTZ00494 435 LRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKAL 513 (664)
T ss_pred HHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhh
Confidence 777888887 2211 1222222222 2223456666666643211211 112221 123333345677765544433
Q ss_pred cccccCCC--ceeecCCCChhhhHHHHHHh
Q 044085 291 SSMVTTPS--AAYSLENLLRDDCLSIFVRH 318 (1151)
Q Consensus 291 ~~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 318 (1151)
......-+ ..|.+..++.++|.++..+.
T Consensus 514 T~~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 514 TPLNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred chhhccCccceeEecCCcCHHHHHHHHhcc
Confidence 22221111 27899999999998877654
No 216
>PRK06921 hypothetical protein; Provisional
Probab=96.70 E-value=0.0081 Score=64.08 Aligned_cols=100 Identities=19% Similarity=0.207 Sum_probs=54.5
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNK 248 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k 248 (1151)
...+.++|..|+|||+||.++++. +..+....++|+... +++..+.... +.....+ +.+. +
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~~------~l~~~l~~~~---------~~~~~~~-~~~~-~ 177 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPFV------EGFGDLKDDF---------DLLEAKL-NRMK-K 177 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEHH------HHHHHHHHHH---------HHHHHHH-HHhc-C
Confidence 346899999999999999999994 333311345666642 2222222211 1111222 2222 3
Q ss_pred ceEEEEeCC-----CCCChhhHHh--hhccccCCC-CCcEEEEecCc
Q 044085 249 KFLLVLDDM-----WTENYDDWTN--LCKPFKAGL-PGSKIIVTTRN 287 (1151)
Q Consensus 249 ~~LlVlDdv-----w~~~~~~~~~--l~~~l~~~~-~gs~iivTtr~ 287 (1151)
-=||||||+ ..+...+|.. +...+.... .+..+||||..
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 569999999 2222335543 443333221 24567888863
No 217
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.70 E-value=0.0059 Score=69.00 Aligned_cols=152 Identities=13% Similarity=0.197 Sum_probs=83.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC-CHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF-DAVGITKV 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~-~~~~~~~~ 220 (1151)
..++||++.++.+...+..+. -|.|.|++|+|||++|+.+.........| . ...-.| .+.+++..
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F-~-----~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAF-E-----YLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCcc-e-----eeeeeecCcHHhcCc
Confidence 468999999999998887654 47899999999999999999843222233 1 111111 12222221
Q ss_pred H-HHHhcCCCCCcchHHHHHHHHHHhcC---CceEEEEeCCCCCChhhHHhhhccccCCC---------CCcEEEEecCc
Q 044085 221 I-LQAAVGSVDVNDLNLLQLQLENQLKN---KKFLLVLDDMWTENYDDWTNLCKPFKAGL---------PGSKIIVTTRN 287 (1151)
Q Consensus 221 i-~~~~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdvw~~~~~~~~~l~~~l~~~~---------~gs~iivTtr~ 287 (1151)
+ +..... . ....+...+ .--++++|+++.........+...+..+. -..+++|++.+
T Consensus 86 l~i~~~~~---~-------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 86 LSIQALKD---E-------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHHhhhhh---c-------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 1 111100 0 011111111 11289999999887777777766653221 12355555544
Q ss_pred ccccc-------cccCCCceeecCCCChhh-hHHHHHHh
Q 044085 288 EDVSS-------MVTTPSAAYSLENLLRDD-CLSIFVRH 318 (1151)
Q Consensus 288 ~~v~~-------~~~~~~~~~~l~~L~~~~-~~~lf~~~ 318 (1151)
.+.. .+..-...+.+.++++++ -.+++...
T Consensus 156 -~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 156 -ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred -CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 3332 111111157888897544 46777653
No 218
>PRK09183 transposase/IS protein; Provisional
Probab=96.69 E-value=0.0075 Score=64.16 Aligned_cols=100 Identities=18% Similarity=0.151 Sum_probs=51.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
..+.|+|+.|+|||+||..+.+.... .. ..+.++. ..++...+...... .. ....+.+.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G--~~v~~~~------~~~l~~~l~~a~~~----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AG--IKVRFTT------AADLLLQLSTAQRQ----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEe------HHHHHHHHHHHHHC----Cc---HHHHHHHHh-cCC
Confidence 36789999999999999999874321 11 2233443 22333333222111 01 112222222 345
Q ss_pred eEEEEeCCCCCChhhHH--hhhccccCC-CCCcEEEEecCc
Q 044085 250 FLLVLDDMWTENYDDWT--NLCKPFKAG-LPGSKIIVTTRN 287 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 287 (1151)
-++|+||+.-.....+. .+...+... ..++ +|+||..
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 69999999643222332 243333222 1344 8888874
No 219
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.054 Score=59.64 Aligned_cols=95 Identities=15% Similarity=0.237 Sum_probs=66.7
Q ss_pred CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE-ecCcccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCC
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV-TTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDF 325 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 325 (1151)
+++=++|+|++...+...+..+...+..-.+++.+|+ |++...+.....+..+.+.+.++++++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~--- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--V--- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--C---
Confidence 4556889999988888889998888887666776555 445455555544444589999999999998886641 1
Q ss_pred CCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 326 SAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 326 ~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
.+ ...++..++|.|..+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 2235778899997665443
No 220
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.68 E-value=0.042 Score=63.64 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=120.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh---h---hccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR---V---EEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~---~~~f~~~~~wv~vs~~~~~ 214 (1151)
+..+-+|+.+..+|-.++...-.. ...-+.+-|.|.+|+|||..+..|.+... . ...| + .+.|+.-.-..+
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f-~-yveINgm~l~~~ 471 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKF-D-YVEINGLRLASP 471 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCc-c-EEEEcceeecCH
Confidence 456779999999999988765432 12334889999999999999999998443 1 1334 1 234444445568
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhc-----CCceEEEEeCCCCCChhhHHhhhccccCC-CCCcEEEEecCc-
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLK-----NKKFLLVLDDMWTENYDDWTNLCKPFKAG-LPGSKIIVTTRN- 287 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~- 287 (1151)
.++...|...+..... ......+.|..+.. .+..++++|++..--....+-+...|.|- .++||++|-+=.
T Consensus 472 ~~~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 8899999888874322 22333344554443 35688888887221001123455556654 478887664421
Q ss_pred -c---------cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 288 -E---------DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 288 -~---------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
- .++..++- ..+..++.+.++-.++...+.-+.... .....+-+|++|+.-.|-.-.|+.+.-+
T Consensus 550 TmdlPEr~l~nrvsSRlg~--tRi~F~pYth~qLq~Ii~~RL~~~~~f-~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRLGL--TRICFQPYTHEQLQEIISARLKGLDAF-ENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred cccCHHHHhccchhhhccc--eeeecCCCCHHHHHHHHHHhhcchhhc-chhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 1 22222222 157777888887777776665443221 2223334455555555555555544433
No 221
>PRK04132 replication factor C small subunit; Provisional
Probab=96.65 E-value=0.04 Score=67.49 Aligned_cols=159 Identities=11% Similarity=0.036 Sum_probs=100.3
Q ss_pred CCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeC
Q 044085 177 MGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDD 256 (1151)
Q Consensus 177 ~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 256 (1151)
|.++||||+|..++++.- .+.+....+-++.|+..... ..+.++......... -..+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~-------------~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKPI-------------GGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc-------------CCCCCEEEEEEC
Confidence 668999999999999531 12232345667777654444 333444332210000 012457999999
Q ss_pred CCCCChhhHHhhhccccCCCCCcEEEEecC-cccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHH
Q 044085 257 MWTENYDDWTNLCKPFKAGLPGSKIIVTTR-NEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIG 335 (1151)
Q Consensus 257 vw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~ 335 (1151)
+...+...+..+...+......+++|.+|. ...+.....+..+.+.++++++++....+.+.+.... ...+ .+..
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~---~e~L 714 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELT---EEGL 714 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCC---HHHH
Confidence 988777788888887776545666655554 4455444444445899999999998887776553221 1222 3678
Q ss_pred HHHHHHcCCChhHHHHHHH
Q 044085 336 EKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 336 ~~i~~~c~g~Plai~~~~~ 354 (1151)
..|++.++|.+..+..+-.
T Consensus 715 ~~Ia~~s~GDlR~AIn~Lq 733 (846)
T PRK04132 715 QAILYIAEGDMRRAINILQ 733 (846)
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 8999999998865544433
No 222
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.64 E-value=0.013 Score=71.68 Aligned_cols=133 Identities=17% Similarity=0.183 Sum_probs=74.9
Q ss_pred ccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
.++|.++.++.|.+.+.....+ .......+.++|+.|+|||++|+.++... ... .+.++.++-.+...+ .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~~----~i~id~se~~~~~~~-~ 531 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GIE----LLRFDMSEYMERHTV-S 531 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CCC----cEEeechhhcccccH-H
Confidence 5789999999999988743210 11234578899999999999999998733 222 234444432221111 1
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHHhcCC-ceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecC
Q 044085 220 VILQAAVGSVDVNDLNLLQLQLENQLKNK-KFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTR 286 (1151)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 286 (1151)
.+ ++.+...... .....+.+.++.+ .-+++||++...+.+.+..+...+..+. ..+-||+||.
T Consensus 532 ~L---iG~~~gyvg~-~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 532 RL---IGAPPGYVGF-DQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred HH---cCCCCCcccc-cccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 11 1211110000 0111233334333 4599999997766777777766554331 2344777775
No 223
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.61 E-value=0.00085 Score=64.30 Aligned_cols=88 Identities=19% Similarity=0.066 Sum_probs=49.5
Q ss_pred EEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceE
Q 044085 172 IPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFL 251 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 251 (1151)
|.++|++|+|||+||+.+++. .. ....-+.++...+..++....--. . .........+...++ +..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~----~~~~~i~~~~~~~~~dl~g~~~~~-~-~~~~~~~~~l~~a~~-----~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG----RPVIRINCSSDTTEEDLIGSYDPS-N-GQFEFKDGPLVRAMR-----KGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT----CEEEEEE-TTTSTHHHHHCEEET--T-TTTCEEE-CCCTTHH-----EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh----cceEEEEeccccccccceeeeeec-c-ccccccccccccccc-----ceeE
Confidence 578999999999999999983 32 334456778777777665332211 0 000000000000111 7899
Q ss_pred EEEeCCCCCChhhHHhhhccc
Q 044085 252 LVLDDMWTENYDDWTNLCKPF 272 (1151)
Q Consensus 252 lVlDdvw~~~~~~~~~l~~~l 272 (1151)
+|||++...+...+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999654555555554444
No 224
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.042 Score=61.08 Aligned_cols=162 Identities=22% Similarity=0.290 Sum_probs=90.6
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (1151)
..+..+.+.|++|+|||+||..++.+ ..|| . |.+-.+ +++ .+-.+......+........+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FP-F---vKiiSp---e~m--------iG~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFP-F---VKIISP---EDM--------IGLSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCC-e---EEEeCh---HHc--------cCccHHHHHHHHHHHHHHhhc
Confidence 35667789999999999999999874 4573 2 222111 111 000011122233344455556
Q ss_pred CCceEEEEeCCCCCChhhHHhhh------------ccccCCC-CCcE--EEEecCcccccccccC---CCceeecCCCCh
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLC------------KPFKAGL-PGSK--IIVTTRNEDVSSMVTT---PSAAYSLENLLR 308 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~------------~~l~~~~-~gs~--iivTtr~~~v~~~~~~---~~~~~~l~~L~~ 308 (1151)
..--.||+||+ +...+|-.+. ..+.... +|-| |+-||....|...|+- ....|+++.++.
T Consensus 597 S~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 77789999999 4445554332 2222221 3445 4557776777766652 223788988887
Q ss_pred -hhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 309 -DDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 309 -~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
++..+.++..- .-.+.+.+.++++.+.+| +-.+|+-+-..+
T Consensus 675 ~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 675 GEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred hHHHHHHHHHcc-----CCCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 67777776532 112233446666666666 333444444433
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.57 E-value=0.013 Score=61.57 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=35.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~ 217 (1151)
.-.++.|+|.+|+|||++|.+++.... ..- ..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~-~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAA--KNG-KKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCC-CeEEEEECC-CCCHHHH
Confidence 457999999999999999999987432 333 678899887 5665544
No 226
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.53 E-value=0.013 Score=61.48 Aligned_cols=172 Identities=20% Similarity=0.175 Sum_probs=99.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHH-HHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVG-ITKV 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~-~~~~ 220 (1151)
..++|-.++..++.+|+...... +.-.-|.|+|+.|.|||+|...+..+ ...|.+...-|...+....++ +++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~---~q~~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSD---IQENGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhh---HHhcCCeEEEEEECccchhhHHHHHH
Confidence 45789999999998888754321 11235679999999999999888876 233434555666665554433 4566
Q ss_pred HHHHhcC-----CCCCcchHHHHHHHHHHhc------CCceEEEEeCCCCCCh----hhHHhhhccccC-CCCCcEEEEe
Q 044085 221 ILQAAVG-----SVDVNDLNLLQLQLENQLK------NKKFLLVLDDMWTENY----DDWTNLCKPFKA-GLPGSKIIVT 284 (1151)
Q Consensus 221 i~~~~~~-----~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdvw~~~~----~~~~~l~~~l~~-~~~gs~iivT 284 (1151)
|.+|+.. .....+..+....+-..|+ +-++.+|+|.++-.-. .-.-.+...... ..+-+-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 6666651 1112223333334444443 2357888887743211 111112222222 2356778899
Q ss_pred cCcc-------cccccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 285 TRNE-------DVSSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 285 tr~~-------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
||-. .|........ ++-++.++-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~-I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRV-IFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccce-eeccCCCChHHHHHHHHHHh
Confidence 9964 3333332222 66677788888888887754
No 227
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.012 Score=70.44 Aligned_cols=135 Identities=22% Similarity=0.282 Sum_probs=81.8
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEE--EeCCCCCHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWA--YVSEDFDAVG 216 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv--~vs~~~~~~~ 216 (1151)
..++|.++.++.+.+.+.....+ ......+...+|+.|||||-||++++.. -|.+-.+.+ ..|+- ..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy-~E-- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEY-ME-- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHH-HH--
Confidence 35889999999999988765542 2234567778999999999999999882 232222333 22321 11
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCce-EEEEeCCCCCChhhHHhhhccccCCC----C-------CcEEEEe
Q 044085 217 ITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKF-LLVLDDMWTENYDDWTNLCKPFKAGL----P-------GSKIIVT 284 (1151)
Q Consensus 217 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~----~-------gs~iivT 284 (1151)
-+.+-+-++.+...--.++ ...|-+.++.++| +|.||+|.....+..+-+...|.+|. . .+-||+|
T Consensus 563 -kHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImT 640 (786)
T COG0542 563 -KHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMT 640 (786)
T ss_pred -HHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEe
Confidence 1222222332222111111 3345566677888 88899997666677777777766552 2 3556777
Q ss_pred cC
Q 044085 285 TR 286 (1151)
Q Consensus 285 tr 286 (1151)
|.
T Consensus 641 SN 642 (786)
T COG0542 641 SN 642 (786)
T ss_pred cc
Confidence 65
No 228
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.51 E-value=0.00091 Score=67.69 Aligned_cols=80 Identities=19% Similarity=0.212 Sum_probs=46.6
Q ss_pred CccEEEEcCCCCcccCccccCCCCccceeeecCC--CCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceE
Q 044085 964 NLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRAC--PRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDL 1041 (1151)
Q Consensus 964 ~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~--~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 1041 (1151)
.|+.|++.++.+++. ..+..|++|++|.++.| .....++.....+|+|++|++++|+|..+.....+..+.+|..|
T Consensus 44 ~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred chhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 444444555544432 23556677777777777 44444443344568888888888887654432334555566666
Q ss_pred Eecc
Q 044085 1042 FIKD 1045 (1151)
Q Consensus 1042 ~l~~ 1045 (1151)
++.+
T Consensus 122 dl~n 125 (260)
T KOG2739|consen 122 DLFN 125 (260)
T ss_pred hccc
Confidence 6655
No 229
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.50 E-value=0.032 Score=69.57 Aligned_cols=182 Identities=14% Similarity=0.088 Sum_probs=93.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-+++.|.+..+++|.+++...-.. +-...+-|.++|++|+|||+||+.+++. ....| +.++..
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~------i~i~~~-- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF------ISINGP-- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE------EEEecH--
Confidence 346889999999988876432100 1123356889999999999999999983 22222 223211
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC-----------hhhHHhhhccccCC-CCCcEE
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN-----------YDDWTNLCKPFKAG-LPGSKI 281 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l~~~-~~gs~i 281 (1151)
++. ... .......+...+.......+.+|++||+..-. ......+...+... ..+..+
T Consensus 247 --~i~----~~~----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 --EIM----SKY----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred --HHh----ccc----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 110 000 01111222233333345667899999983210 01122233322221 123334
Q ss_pred EE-ecCcc-cccccccC---CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh
Q 044085 282 IV-TTRNE-DVSSMVTT---PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL 347 (1151)
Q Consensus 282 iv-Ttr~~-~v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 347 (1151)
++ ||... .+...... ....+.+...+.++-.+++....-+. ....+ .....+++.+.|..-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~d----~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAED----VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCccc----cCHHHHHHhCCCCCH
Confidence 43 55433 22222211 12267778788888888887554221 11111 224567788888653
No 230
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.48 E-value=0.014 Score=61.47 Aligned_cols=86 Identities=21% Similarity=0.339 Sum_probs=54.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCcchH-----
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD-AVGITKVILQAAV--------GSVDVNDLN----- 235 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~-~~~~~~~i~~~~~--------~~~~~~~~~----- 235 (1151)
.-++|.|..|+||||||+.+++ .++.+|.+..+++-+.+... ..++.+++...-. ...+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999999 45456757777777876654 3445555443211 111111111
Q ss_pred HHHHHHHHHh--c-CCceEEEEeCC
Q 044085 236 LLQLQLENQL--K-NKKFLLVLDDM 257 (1151)
Q Consensus 236 ~~~~~l~~~l--~-~k~~LlVlDdv 257 (1151)
...-.+.+++ + ++.+|+++||+
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344555 3 88999999999
No 231
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.46 E-value=0.011 Score=61.15 Aligned_cols=87 Identities=13% Similarity=0.169 Sum_probs=52.8
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHH---hc------CCCCCcchHHH
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQA---AV------GSVDVNDLNLL 237 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~---~~------~~~~~~~~~~~ 237 (1151)
..-.++.|+|.+|+|||++|.+++... ...- ..++|++... ++...+.+..-.. .. ...+..+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g-~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQG-KKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCC-CeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 345799999999999999999988743 2333 6789998876 6666555432211 10 11111122223
Q ss_pred HHHHHHHhcC-CceEEEEeCC
Q 044085 238 QLQLENQLKN-KKFLLVLDDM 257 (1151)
Q Consensus 238 ~~~l~~~l~~-k~~LlVlDdv 257 (1151)
...+.+.+.. +.-+||+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 4444444443 4558888887
No 232
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.45 E-value=0.039 Score=64.00 Aligned_cols=160 Identities=13% Similarity=0.056 Sum_probs=81.6
Q ss_pred CccccchhhHHHHHHHHhcC----CCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRD----DLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~----~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~ 217 (1151)
.++.|.+..++.+.+....- ...+-...+-|.++|++|+|||.+|+.+++... ..| +-+..+. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~----~~l~~~~------l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL----LRLDVGK------L 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE----EEEEhHH------h
Confidence 45778777666655432110 000112346788999999999999999998432 222 1222211 1
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC--------Chhh----HHhhhccccCCCCCcEEEEec
Q 044085 218 TKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE--------NYDD----WTNLCKPFKAGLPGSKIIVTT 285 (1151)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--------~~~~----~~~l~~~l~~~~~gs~iivTt 285 (1151)
.. ..-......+...+...-...+.+|++|++..- +... ...+...+.....+--||.||
T Consensus 296 ~~--------~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 FG--------GIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred cc--------cccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 00 000111122222222222357899999998421 0000 111122222222344566677
Q ss_pred Cccc-ccccc---cCCCceeecCCCChhhhHHHHHHhhcC
Q 044085 286 RNED-VSSMV---TTPSAAYSLENLLRDDCLSIFVRHSLG 321 (1151)
Q Consensus 286 r~~~-v~~~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~ 321 (1151)
...+ +...+ +.....+.+..-+.++-.++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 6543 22222 112237788888888888888877643
No 233
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.43 E-value=0.017 Score=72.38 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=69.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++|.+..++.+...+...... .+....++.++|+.|+|||++|+.+++.. ...- ...+.+..+.-.+ ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~-~~~i~id~se~~~-~~-- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSD-DAMVRIDMSEFME-KH-- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCC-CcEEEEEhHHhhh-hh--
Confidence 46889999999998888653210 11223578899999999999999998732 1111 2233444432111 11
Q ss_pred HHHHHHh-cCCCCCcchHHHHHHHHHHhcCC-ceEEEEeCCCCCChhhHHhhhccccCC
Q 044085 219 KVILQAA-VGSVDVNDLNLLQLQLENQLKNK-KFLLVLDDMWTENYDDWTNLCKPFKAG 275 (1151)
Q Consensus 219 ~~i~~~~-~~~~~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~ 275 (1151)
....+ +........+. ...+.+.++.+ .-+|+|||+...+...+..+...+..+
T Consensus 642 --~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g 697 (857)
T PRK10865 642 --SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDG 697 (857)
T ss_pred --hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhC
Confidence 11222 21111111111 11233333333 369999999766777787777666543
No 234
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.43 E-value=0.067 Score=66.74 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=94.3
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
.++.|.+..+++|.+.+...-.. +....+-+.++|++|+|||++|+++++. ....| +.++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f------i~v~~~--- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF------IAVRGP--- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE------EEEehH---
Confidence 45788888888877765421110 1123445789999999999999999994 32333 233211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC--------Ch----hhHHhhhccccC--CCCCcE
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE--------NY----DDWTNLCKPFKA--GLPGSK 280 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--------~~----~~~~~l~~~l~~--~~~gs~ 280 (1151)
+ ++... -......+.......-+..+.+|++|++..- .. ....++...+.. ...+--
T Consensus 522 -~----l~~~~----vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 -E----ILSKW----VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred -H----Hhhcc----cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 11111 0111122222223333466899999998421 00 011223222222 123445
Q ss_pred EEEecCcccccc-ccc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 281 IIVTTRNEDVSS-MVT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 281 iivTtr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
||.||...+..+ ... .....+.+...+.++-.++|+.+.-+. ......+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 666776554332 221 122378888888888888887655322 1112222 345667777754
No 235
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.42 E-value=0.014 Score=69.21 Aligned_cols=172 Identities=21% Similarity=0.285 Sum_probs=88.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh--ccCCCceEEEEeCC---CCCHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE--EHFPDFRAWAYVSE---DFDAVG 216 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~~wv~vs~---~~~~~~ 216 (1151)
++++|.+..++.+...+.... ..-|.|+|..|+|||++|+.+++..+.. ..|....-|+.+.. .++.+.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~ 138 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERG 138 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccc
Confidence 368999999999988764432 2356799999999999999998632211 12311223444432 122222
Q ss_pred HHHHHHHHhcCCC--CCcchH---HHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC----------------
Q 044085 217 ITKVILQAAVGSV--DVNDLN---LLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG---------------- 275 (1151)
Q Consensus 217 ~~~~i~~~~~~~~--~~~~~~---~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~---------------- 275 (1151)
+...++....... ...... ....+....-+...=.|++|++...+......+...+..+
T Consensus 139 ~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~ 218 (531)
T TIGR02902 139 IADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNI 218 (531)
T ss_pred cchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCccc
Confidence 2222211110000 000000 0000000011234568899999777666666665443221
Q ss_pred ------------CCCcEEEE-ecCccc-ccccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 276 ------------LPGSKIIV-TTRNED-VSSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 276 ------------~~gs~iiv-Ttr~~~-v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
....++|. ||++.. +..........+.+++++++|..+++++.+
T Consensus 219 ~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 219 PSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred ccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHH
Confidence 11236654 455432 322222222267888898888888877655
No 236
>PHA00729 NTP-binding motif containing protein
Probab=96.41 E-value=0.017 Score=58.68 Aligned_cols=25 Identities=48% Similarity=0.522 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999984
No 237
>PRK04296 thymidine kinase; Provisional
Probab=96.38 E-value=0.009 Score=60.40 Aligned_cols=112 Identities=14% Similarity=-0.039 Sum_probs=61.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC---CcchHHHHHHHHHHhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVD---VNDLNLLQLQLENQLK 246 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~l~~~l~ 246 (1151)
.++.|+|..|.||||+|........ .+- ..++.+. ..++.......++.+++.... ....++....+++ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g-~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERG-MKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcC-CeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hC
Confidence 4788999999999999999888432 332 3333332 111222222334444431111 2233444444444 33
Q ss_pred CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED 289 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 289 (1151)
++.-+||+|.+.--+.++..++...+. ..|..||+|.++.+
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 345589999994332232333333332 35788999998754
No 238
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.1 Score=59.30 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=65.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCC------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
-.++=|.+....++.+++..-..+ +-...+-|.++|++|.|||.||+++++... -.| +.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~--vPf------~~isAp--- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG--VPF------LSISAP--- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC--Cce------Eeecch---
Confidence 456778999999888887653221 122346688999999999999999999433 233 444433
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 258 (1151)
+|+. ....++.+.+.+...+..+.-++++++|++.
T Consensus 258 -----eivS----GvSGESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 -----EIVS----GVSGESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred -----hhhc----ccCcccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 1222 1223445555555556667789999999994
No 239
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.29 E-value=0.021 Score=71.87 Aligned_cols=138 Identities=19% Similarity=0.214 Sum_probs=77.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++|.+..++.+.+.+.....+ ......++.++|+.|+|||+||+.+.+.. -..- ...+-+..+.-.+...+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~-~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSE-DAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCc-cceEEEEchhccccccHH
Confidence 46889999999998888643211 11223466789999999999999998732 1111 223333443322211111
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCc-eEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecC
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKK-FLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTR 286 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~-~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 286 (1151)
+ -++.+......++ ...+.+.++.++ -+++||++...+...+..+...+..+. ..+-||+||.
T Consensus 586 ~----l~g~~~gyvg~~~-~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn 660 (821)
T CHL00095 586 K----LIGSPPGYVGYNE-GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSN 660 (821)
T ss_pred H----hcCCCCcccCcCc-cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCC
Confidence 1 1121110000000 113444555555 488899998777777888777766541 3455677776
Q ss_pred c
Q 044085 287 N 287 (1151)
Q Consensus 287 ~ 287 (1151)
.
T Consensus 661 ~ 661 (821)
T CHL00095 661 L 661 (821)
T ss_pred c
Confidence 4
No 240
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.051 Score=62.54 Aligned_cols=160 Identities=14% Similarity=0.059 Sum_probs=81.3
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
+++=|.++-+.+|.+.+...-.. +-...+-|..+|++|.|||++|+++++ +....| +.|+.+
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF------lsvkgp--- 502 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF------LSVKGP--- 502 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe------eeccCH---
Confidence 34556777666666554332110 223567788999999999999999999 544556 444432
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-----------ChhhHHhhhccccCCCCCcE--E
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-----------NYDDWTNLCKPFKAGLPGSK--I 281 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~~~~~gs~--i 281 (1151)
+++.. . -.+....+.+..++.=+--+.+|.||.+..- ......++...+........ |
T Consensus 503 -EL~sk----~----vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 -ELFSK----Y----VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred -HHHHH----h----cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 11111 1 0112222222223333345688888877321 00112233333333222223 3
Q ss_pred EE-ecCcccccccccC---CCceeecCCCChhhhHHHHHHhhcC
Q 044085 282 IV-TTRNEDVSSMVTT---PSAAYSLENLLRDDCLSIFVRHSLG 321 (1151)
Q Consensus 282 iv-Ttr~~~v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~ 321 (1151)
|- |.|...+-..+-. ..+.+.+..-+.+.-.++|+.++-+
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 33 4454444333221 2235666666666667888888743
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.25 E-value=0.0032 Score=58.59 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.5
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
||.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999984
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.23 E-value=0.034 Score=56.23 Aligned_cols=87 Identities=21% Similarity=0.090 Sum_probs=48.8
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC-CHHHHHHHHHHHhcCC----CCCcchHH-HHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF-DAVGITKVILQAAVGS----VDVNDLNL-LQLQLE 242 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~-~~~~~~~~i~~~~~~~----~~~~~~~~-~~~~l~ 242 (1151)
++||.++|+.|+||||.+.+++.....+ ...+..++..... ...+-++..++.++-+ ....+... ..+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 3699999999999999998888754433 3567777764221 2344456666666511 12222323 333344
Q ss_pred HHhcCCceEEEEeCCC
Q 044085 243 NQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 243 ~~l~~k~~LlVlDdvw 258 (1151)
+.-.++.=+|++|=.-
T Consensus 78 ~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHTTSSEEEEEE-S
T ss_pred HHhhcCCCEEEEecCC
Confidence 3323334477777653
No 243
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.036 Score=63.89 Aligned_cols=163 Identities=15% Similarity=0.096 Sum_probs=85.4
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC--CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED--FDAVGITKVILQAAVGSVDVNDLNLLQLQLENQL 245 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l 245 (1151)
...-|.|.|+.|+|||+||+++++... +++. -.+.+|+++.- ...+.+++.+ .....+.+
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~-~hv~~v~Cs~l~~~~~e~iQk~l----------------~~vfse~~ 491 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLI-AHVEIVSCSTLDGSSLEKIQKFL----------------NNVFSEAL 491 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccc-eEEEEEechhccchhHHHHHHHH----------------HHHHHHHH
Confidence 345789999999999999999999655 3443 44556666532 1222222222 12334556
Q ss_pred cCCceEEEEeCCCC------CChhhHHh-----------hhccccCCCCCcEEEEecCcccc-cccccCC---CceeecC
Q 044085 246 KNKKFLLVLDDMWT------ENYDDWTN-----------LCKPFKAGLPGSKIIVTTRNEDV-SSMVTTP---SAAYSLE 304 (1151)
Q Consensus 246 ~~k~~LlVlDdvw~------~~~~~~~~-----------l~~~l~~~~~gs~iivTtr~~~v-~~~~~~~---~~~~~l~ 304 (1151)
...+-+|||||+.- ....+|.. +...+...++.-++|.|.....- ....... +.+..+.
T Consensus 492 ~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ 571 (952)
T KOG0735|consen 492 WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALP 571 (952)
T ss_pred hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecC
Confidence 67899999999942 11122321 11112222222245555554322 1111111 1267888
Q ss_pred CCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC-hhHHHHH
Q 044085 305 NLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS-PLAAKTL 352 (1151)
Q Consensus 305 ~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 352 (1151)
.+..++-.++++... ..... ....+...-+..+|+|. |.-++++
T Consensus 572 ap~~~~R~~IL~~~~-s~~~~---~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 572 APAVTRRKEILTTIF-SKNLS---DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred CcchhHHHHHHHHHH-Hhhhh---hhhhHHHHHHHHhcCCccchhHHHH
Confidence 888877766665432 22211 11122333378888874 4444444
No 244
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.16 E-value=0.075 Score=53.63 Aligned_cols=179 Identities=16% Similarity=0.123 Sum_probs=95.6
Q ss_pred CCccccchhhHH---HHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHH
Q 044085 141 EDEVYGREKDKE---ALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 141 ~~~~vgr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~ 217 (1151)
-+++||.++.+. -|++.|...+.=++-.++-|..+|++|.|||.+|+++.+..+ -.| +.|..
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~------l~vka------- 184 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL------LLVKA------- 184 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce------EEech-------
Confidence 457899988765 466667554322344678899999999999999999999433 223 22221
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCCC------------hhhHHhhhccccC--CCCCcEEE
Q 044085 218 TKVILQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTEN------------YDDWTNLCKPFKA--GLPGSKII 282 (1151)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~------------~~~~~~l~~~l~~--~~~gs~ii 282 (1151)
..-|-+.++ +-....+.+.+.- +.-++.+.+|.+.--. .+...++...+.. .+.|-.-|
T Consensus 185 t~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 185 TELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 111111111 1112222232222 3468899999873210 0111222222222 23466666
Q ss_pred EecCcccccccc-cC-CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044085 283 VTTRNEDVSSMV-TT-PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS 345 (1151)
Q Consensus 283 vTtr~~~v~~~~-~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 345 (1151)
-.|...++.+.. .. ....++.+--+++|-.+++...+-.-.- ... .-.+.++++.+|.
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-pv~----~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL-PVD----ADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC-ccc----cCHHHHHHHhCCC
Confidence 666655543322 21 1125677777888888888877632211 111 1245566666665
No 245
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.00041 Score=69.93 Aligned_cols=99 Identities=21% Similarity=0.233 Sum_probs=61.9
Q ss_pred CCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEecccccccccccc--ccccCCccCeee
Q 044085 555 LRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFP--DIGNLTNLRHLK 632 (1151)
Q Consensus 555 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~ 632 (1151)
+.+.+.|++-||.++++. -..+++.|++|.||-|.|+.| +.+..+++|+.|.|+.| .+.++.+ .+.++++|+.|-
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 455666677777766652 234677777777777777776 34677777777777777 4554432 256777777777
Q ss_pred cCCCCccccCccc-----ccCccCCCccC
Q 044085 633 NSHSNLFEEMPLR-----IGKLTSLRTLA 656 (1151)
Q Consensus 633 l~~~~~~~~~p~~-----i~~L~~L~~L~ 656 (1151)
|..|...+..+.. +.-|++|+.|+
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777654444332 34555666554
No 246
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.14 E-value=0.011 Score=59.17 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=27.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEE
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWA 206 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv 206 (1151)
...+|.|+|+.|+||||+|+.+++ .....+ ...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~-~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKY-SNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcC-CcEEEE
Confidence 446999999999999999999998 444455 444444
No 247
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.11 E-value=0.02 Score=66.29 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=60.4
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (1151)
+.-+++.++|++|+||||||+-++++.. | .++=|+.|+..+...+-..|...+.. ...+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaG----Y--sVvEINASDeRt~~~v~~kI~~avq~--------------~s~l~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAG----Y--SVVEINASDERTAPMVKEKIENAVQN--------------HSVLD 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcC----c--eEEEecccccccHHHHHHHHHHHHhh--------------ccccc
Confidence 3457999999999999999999998542 4 47778889888887777766655541 12232
Q ss_pred --CCceEEEEeCCCCCChhhHHhhhcc
Q 044085 247 --NKKFLLVLDDMWTENYDDWTNLCKP 271 (1151)
Q Consensus 247 --~k~~LlVlDdvw~~~~~~~~~l~~~ 271 (1151)
+++.-+|+|.+........+.+...
T Consensus 384 adsrP~CLViDEIDGa~~~~Vdvilsl 410 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAPRAAVDVILSL 410 (877)
T ss_pred cCCCcceEEEecccCCcHHHHHHHHHH
Confidence 6788999999977654344444433
No 248
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0083 Score=69.03 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=67.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
+.+-+|.++-+++|.+++.-..-.+.-+-+++..+|++|||||.+|+.++. .....| +-++|++-.|..+|-.-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkF----fRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKF----FRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCce----EEEeccccccHHhhccc
Confidence 345679999999999998655433344668999999999999999999999 555556 23567766665554211
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCC
Q 044085 221 ILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 258 (1151)
= +..-..-...+.+.|++ .+-..-|+.+|.|.
T Consensus 484 R-----RTYVGAMPGkiIq~LK~-v~t~NPliLiDEvD 515 (906)
T KOG2004|consen 484 R-----RTYVGAMPGKIIQCLKK-VKTENPLILIDEVD 515 (906)
T ss_pred c-----eeeeccCChHHHHHHHh-hCCCCceEEeehhh
Confidence 0 00001112223333322 23456788999984
No 249
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.059 Score=59.26 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=47.3
Q ss_pred CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHHHh
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFVRH 318 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 318 (1151)
+++=++|+|++...+...-..+...+.....+..+|++|.+ ..+........+.+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 34445566888766666666666666554445656666665 4455454444458999999999998887653
No 250
>PRK00625 shikimate kinase; Provisional
Probab=96.02 E-value=0.033 Score=54.95 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|.++||+|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 251
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.02 E-value=0.021 Score=60.53 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=37.4
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccC---CCceEEEEeCCCCCHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF---PDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~vs~~~~~~~~~~ 219 (1151)
.-.++.|+|.+|+|||++|.+++........+ ...++|++..+.++..++.+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 45799999999999999999997542222211 15789999888777655443
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.00 E-value=0.047 Score=53.94 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=29.6
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
++.|+|.+|+||||+|..+..... ..- ..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~-~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKG-GKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcC-CEEEEEECCcchH
Confidence 368999999999999999988442 222 5677877765543
No 253
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.00 E-value=0.018 Score=63.21 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=55.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
..+.++|..|+|||.||..+++.. ...- ..++++++. +++..+....... ..+.. .. .+.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g-~~V~y~t~~------~l~~~l~~~~~~~--~~~~~---~~-~~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRG-KSVIYRTAD------ELIEILREIRFNN--DKELE---EV-YDLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCC-CeEEEEEHH------HHHHHHHHHHhcc--chhHH---HH-HHHhc-cC
Confidence 468999999999999999999944 3332 345666543 2333332211100 11111 11 22222 23
Q ss_pred eEEEEeCCCCCChhhHH--hhhccccCC-CCCcEEEEecCc
Q 044085 250 FLLVLDDMWTENYDDWT--NLCKPFKAG-LPGSKIIVTTRN 287 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 287 (1151)
=|||+||+.......|. .+...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 58999999655434443 344333322 234568888874
No 254
>PRK06696 uridine kinase; Validated
Probab=95.99 E-value=0.0088 Score=62.47 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=35.6
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 146 GREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|.+-+++|.+.+.... .....+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46677788888887643 236789999999999999999999984
No 255
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.99 E-value=0.0097 Score=56.72 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=63.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh-ccCCCceEEEEeCCCCCHHHHHHHHHH
Q 044085 145 YGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE-EHFPDFRAWAYVSEDFDAVGITKVILQ 223 (1151)
Q Consensus 145 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~vs~~~~~~~~~~~i~~ 223 (1151)
||+...++++.+.+..-.. ...-|.|+|..|+||+++|+.++...... ..| +.+. ...+..++
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~------~~~~----~~~~~~~~-- 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPF------IVID----CASLPAEL-- 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-C------CCCC----HHCTCHHH--
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCe------EEec----hhhCcHHH--
Confidence 4666777777776655321 22357899999999999999998843321 112 1110 00000111
Q ss_pred HhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC-CCCcEEEEecCcc
Q 044085 224 AAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG-LPGSKIIVTTRNE 288 (1151)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~~ 288 (1151)
+.. .+.-.++++|+..-+......+...+... ....|+|.||+..
T Consensus 65 -----------------l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 65 -----------------LEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------------HHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------------HHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111 25667889999776666667777666543 4678999999843
No 256
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.94 E-value=0.02 Score=56.23 Aligned_cols=129 Identities=19% Similarity=0.188 Sum_probs=66.4
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC-CCCHHHHHHHHH
Q 044085 144 VYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE-DFDAVGITKVIL 222 (1151)
Q Consensus 144 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~-~~~~~~~~~~i~ 222 (1151)
+||....+.++++.+..... .. .-|.|+|..|+||+.+|+.+++.-.- ...-||.|.- ..+.+.+-.++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s~r-----~~~pfi~vnc~~~~~~~~e~~LF 71 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNSPR-----KNGPFISVNCAALPEELLESELF 71 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCSTT-----TTS-EEEEETTTS-HHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhhhc-----ccCCeEEEehhhhhcchhhhhhh
Confidence 47888888888887766542 12 34569999999999999999984321 1223344432 223332222222
Q ss_pred HHhcCCC-C-CcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC------C-----CCcEEEEecCc
Q 044085 223 QAAVGSV-D-VNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG------L-----PGSKIIVTTRN 287 (1151)
Q Consensus 223 ~~~~~~~-~-~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~------~-----~gs~iivTtr~ 287 (1151)
....... . ..... ..+. +-..=.|+||+|..........+...+..+ . ...|||.||..
T Consensus 72 G~~~~~~~~~~~~~~---G~l~---~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 72 GHEKGAFTGARSDKK---GLLE---QANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EBCSSSSTTTSSEBE---HHHH---HTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred ccccccccccccccC---Ccee---eccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 2111100 0 01000 1111 234557889999766555555555444322 1 25688888874
No 257
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.93 E-value=0.0036 Score=37.52 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=9.0
Q ss_pred ccEEEcccccccccchhhh
Q 044085 581 LRYLEFSRTAIEVLPESVS 599 (1151)
Q Consensus 581 Lr~L~Ls~n~i~~lp~~i~ 599 (1151)
|++|||++|.|+.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4445555554444444433
No 258
>PRK10867 signal recognition particle protein; Provisional
Probab=95.93 E-value=0.066 Score=60.90 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+.+|.++|.+|+||||.|..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHH
Confidence 468999999999999998877776
No 259
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.92 E-value=0.13 Score=57.61 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh
Q 044085 148 EKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR 194 (1151)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 194 (1151)
+.-.+.|.+.+...+. ....+|+|.|.=|+||||+.+.+.+..+
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~ 45 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELK 45 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445667777766531 3567999999999999999999988544
No 260
>PRK13948 shikimate kinase; Provisional
Probab=95.90 E-value=0.046 Score=54.43 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4468899999999999999999883
No 261
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.89 E-value=0.027 Score=59.75 Aligned_cols=55 Identities=22% Similarity=0.269 Sum_probs=39.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhcc---CCCceEEEEeCCCCCHHHHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEH---FPDFRAWAYVSEDFDAVGITKVILQA 224 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~vs~~~~~~~~~~~i~~~ 224 (1151)
-.+.=|+|.+|+|||.||.+++-+..+... ....++|++-...|+..++.+ |+++
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~-i~~~ 95 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ-IAER 95 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH-HHHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH-Hhhc
Confidence 358889999999999999888764433221 225689999999999887754 4544
No 262
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.89 E-value=0.045 Score=55.67 Aligned_cols=103 Identities=18% Similarity=0.154 Sum_probs=52.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHh----
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQL---- 245 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l---- 245 (1151)
++..|.|.+|+||||+++.+.......+ ..++++..+. .....+.+..+. ....... .+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~-----~Aa~~L~~~~~~--~a~Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTN-----KAAKELREKTGI--EAQTIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSH-----HHHHHHHHHHTS---EEEHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcH-----HHHHHHHHhhCc--chhhHHH---HHhcCCcccc
Confidence 4788999999999999999887443321 2334433222 122222222210 0001000 000000
Q ss_pred -----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc
Q 044085 246 -----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN 287 (1151)
Q Consensus 246 -----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 287 (1151)
..++-+||+|++.-.+...+..+...... .|+|+|+.--.
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 23346999999977666677777766555 47788765543
No 263
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.87 E-value=0.07 Score=51.52 Aligned_cols=60 Identities=10% Similarity=0.168 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCceEEEEeCCCC--CChhhHHhhhccccCCCCCcEEEEecCccccccccc
Q 044085 236 LLQLQLENQLKNKKFLLVLDDMWT--ENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSMVT 295 (1151)
Q Consensus 236 ~~~~~l~~~l~~k~~LlVlDdvw~--~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 295 (1151)
+....+.+.+-+++-+++-|.=-. +....|+-+.-.-.-+..|+-|+++|.+..+-..+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 334456677778899999885321 223456544333233456999999999988766654
No 264
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.86 E-value=0.052 Score=56.64 Aligned_cols=43 Identities=19% Similarity=0.059 Sum_probs=32.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
.-.++.|.|.+|+||||+|.+++.... ..- ..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g-~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETA--GQG-KKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hcC-CeEEEEECCCCCH
Confidence 457999999999999999999987432 222 4677887655554
No 265
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.85 E-value=0.0064 Score=69.59 Aligned_cols=50 Identities=26% Similarity=0.329 Sum_probs=40.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+++|.++.+++|++.|.......+..-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994332222234579999999999999999999983
No 266
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.84 E-value=0.03 Score=55.02 Aligned_cols=79 Identities=18% Similarity=0.130 Sum_probs=45.7
Q ss_pred EEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC--Cc
Q 044085 172 IPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN--KK 249 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~--k~ 249 (1151)
+.|.|..|+|||++|.++... .. ...+++.-.+.++. +..+.|..............+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~-~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LG-GPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cC-CCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 678999999999999998763 22 46677777777654 34444444333112111111222233333321 23
Q ss_pred eEEEEeCC
Q 044085 250 FLLVLDDM 257 (1151)
Q Consensus 250 ~LlVlDdv 257 (1151)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999987
No 267
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.82 E-value=0.0076 Score=59.34 Aligned_cols=79 Identities=16% Similarity=0.124 Sum_probs=44.8
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc-CCC---CCcchHHHHHHHHHHhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV-GSV---DVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~-~~~---~~~~~~~~~~~l~~~l~ 246 (1151)
++.|.|.+|+||||+|..+..... ...+++.-...++ .+..+.|..... .+. ..+...++...+.....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~------~~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG------LQVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC------CCcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 689999999999999999986321 2234444344333 345555544433 211 12222334445544443
Q ss_pred CCceEEEEeCC
Q 044085 247 NKKFLLVLDDM 257 (1151)
Q Consensus 247 ~k~~LlVlDdv 257 (1151)
+ .=++|+|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 3 337888987
No 268
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.81 E-value=0.0039 Score=63.24 Aligned_cols=108 Identities=16% Similarity=0.060 Sum_probs=75.6
Q ss_pred cCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCC--CCcccCccccCCCCccceeeecCCCCCc--cCCCCCCCCCC
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGC--RYLTALPNGIYNLSSLQHLEIRACPRIA--SIPEEVGFPPN 1012 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n--~~~~~l~~~l~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~ 1012 (1151)
.-.+..|+.|.+.+..++++......++|+.|.++.| +..+.++.-...+++|++|+++.|++.. +++. +..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcc
Confidence 3345667777777777776665555579999999999 6666665555677999999999998763 2222 357788
Q ss_pred ccEEEecCCCcccccc--ccCCCCCCCcceEEecc
Q 044085 1013 ITELHIEGPNICKLFF--DLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1013 L~~L~Ls~n~l~~~~~--~~~~~~l~~L~~L~l~~ 1045 (1151)
|..|++.+|..+.... ...|.-+++|+.|+-..
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 9999999998665332 11255577777776555
No 269
>PHA02244 ATPase-like protein
Probab=95.79 E-value=0.07 Score=58.33 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=25.8
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
....+.+|+.... -|.|+|+.|+|||++|+++++.
T Consensus 108 ~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 108 ETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHHH
Confidence 3345555664432 3678999999999999999984
No 270
>PRK13695 putative NTPase; Provisional
Probab=95.76 E-value=0.013 Score=58.65 Aligned_cols=23 Identities=43% Similarity=0.478 Sum_probs=20.3
Q ss_pred EEEEecCCCccHHHHHHHHhhch
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998753
No 271
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.66 E-value=0.051 Score=51.13 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=52.2
Q ss_pred ccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCc
Q 044085 936 GLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNI 1013 (1151)
Q Consensus 936 ~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 1013 (1151)
.|.++++|+.+.+.. .+..+....|. ++|+.+.+.++ +...-...|.++++|+.+.+.+ .....-...|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466778888888874 56666666554 46777777764 3332334567777788888865 3333334455667778
Q ss_pred cEEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 1014 TELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1014 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
+.+++..+ +..+... .|.+. +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~-~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSS-SFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTT-TTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchh-hhcCC-CceEEEECC
Confidence 87777654 4433332 35565 666666553
No 272
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.63 E-value=0.087 Score=59.93 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999888774
No 273
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.63 E-value=0.059 Score=59.64 Aligned_cols=53 Identities=19% Similarity=0.236 Sum_probs=39.3
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhcc---CCCceEEEEeCCCCCHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEH---FPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
...++-|+|.+|+|||++|.+++........ -...++||+..+.|++.++.+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 4568999999999999999999864322111 1147899999998888776544
No 274
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.60 E-value=0.019 Score=58.53 Aligned_cols=111 Identities=12% Similarity=0.179 Sum_probs=60.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH-HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV-GITKVILQAAVGSVDVNDLNLLQLQLENQLKNK 248 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k 248 (1151)
.+|.|+|+.|+||||++..+... ..... ...++. +.++.... .-...++.+.. ...+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~-~~~i~t-~e~~~E~~~~~~~~~i~q~~---vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNK-THHILT-IEDPIEFVHESKRSLINQRE---VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcC-CcEEEE-EcCCccccccCccceeeecc---cCCCccCHHHHHHHHhcCC
Confidence 37899999999999999988773 22233 334433 22221110 00001111100 0112233455677777777
Q ss_pred ceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcccccc
Q 044085 249 KFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSS 292 (1151)
Q Consensus 249 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 292 (1151)
+=.|++|++.+ .+.+..+.... ..|..++.|+...++..
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 88999999954 34444433332 23556888887665543
No 275
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.035 Score=66.53 Aligned_cols=159 Identities=20% Similarity=0.227 Sum_probs=90.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCC----CceEEEEeCCCCCHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFP----DFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~~~wv~vs~~~~~~~~ 217 (1151)
+.++||+++++++++.|..... .-+ .++|.+|||||++|.-++... +.+.-| +..++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s----------- 231 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS----------- 231 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----------
Confidence 5689999999999999987653 112 468999999999988877732 112221 112211
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHhc-CCceEEEEeCCCCC-------C-hhhHHhhhccccCCCCCcEEEEecCcc
Q 044085 218 TKVILQAAVGSVDVNDLNLLQLQLENQLK-NKKFLLVLDDMWTE-------N-YDDWTNLCKPFKAGLPGSKIIVTTRNE 288 (1151)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~-------~-~~~~~~l~~~l~~~~~gs~iivTtr~~ 288 (1151)
-++..-..+..-..+++++...+.+.++ .++..+.+|.+..- . ..+-..+..|....+.--.|-.||-++
T Consensus 232 -LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~E 310 (786)
T COG0542 232 -LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDE 310 (786)
T ss_pred -ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHH
Confidence 0111111122334456666555555554 45899999998421 0 012233444433333344566777543
Q ss_pred cc-----cccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 289 DV-----SSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 289 ~v-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
-- -......-+.+.+..-+.+++..+++-..
T Consensus 311 YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 311 YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 11 01111122378889999999988876543
No 276
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.21 Score=55.08 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=51.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH--HHHHHHHHHhcCC-CCCcchHHHHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV--GITKVILQAAVGS-VDVNDLNLLQLQLENQ 244 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~~~l~~~ 244 (1151)
+.++|+++|++|+||||++..++.... ..= ..+..++. +.+.+. +-++...+..+-+ ....+.+.+...+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~--~~G-kkVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH--GKK-KTVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH--HcC-CcEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHH
Confidence 457999999999999999999987432 221 23444443 333322 2222222233211 1123455555555443
Q ss_pred hcC-CceEEEEeCCCCC--ChhhHHhhhccc
Q 044085 245 LKN-KKFLLVLDDMWTE--NYDDWTNLCKPF 272 (1151)
Q Consensus 245 l~~-k~~LlVlDdvw~~--~~~~~~~l~~~l 272 (1151)
-.. +.=+|++|-.-.. +.....++...+
T Consensus 316 k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~l 346 (436)
T PRK11889 316 KEEARVDYILIDTAGKNYRASETVEEMIETM 346 (436)
T ss_pred HhccCCCEEEEeCccccCcCHHHHHHHHHHH
Confidence 322 2346777876432 223344444443
No 277
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.51 E-value=0.23 Score=53.73 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=39.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~ 217 (1151)
.++=..+....+..++... +-|.|.|.+|+||||+|+.++. .....| +.|..+...+..++
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~--~l~~~~----~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA--RLNWPC----VRVNLDSHVSRIDL 106 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH--HHCCCe----EEEEecCCCChhhc
Confidence 3444444555666666443 2589999999999999999998 433222 35555555554443
No 278
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.015 Score=54.35 Aligned_cols=24 Identities=42% Similarity=0.480 Sum_probs=21.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
--|+|.|++|+||||+++.+.+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 468999999999999999999843
No 279
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.083 Score=55.93 Aligned_cols=89 Identities=18% Similarity=0.069 Sum_probs=58.7
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc-----CCCCCcchHHHHHHH
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV-----GSVDVNDLNLLQLQL 241 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~l 241 (1151)
+.-+++=|+|+.|+||||+|.+++-... ..- ..++|++.-..+++..+...-...+. ..........+.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq--~~g-~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQ--KPG-GKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhh--cCC-CeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 4567889999999999999999887443 333 57899999999998776544333122 122222333334444
Q ss_pred HHHhcCCceEEEEeCCC
Q 044085 242 ENQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 242 ~~~l~~k~~LlVlDdvw 258 (1151)
......+--|+|+|.|-
T Consensus 135 ~~~~~~~i~LvVVDSva 151 (279)
T COG0468 135 ARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHhccCCCCEEEEecCc
Confidence 44444456799999883
No 280
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.45 E-value=0.058 Score=59.32 Aligned_cols=58 Identities=17% Similarity=0.031 Sum_probs=41.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhh---ccCCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVE---EHFPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
.-.++-|+|.+|+|||+|+.+++-..... ......++||+-...|+++++.+ +++.++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 45688899999999999999886433221 11114689999999999888765 444443
No 281
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.0017 Score=65.65 Aligned_cols=82 Identities=27% Similarity=0.288 Sum_probs=67.8
Q ss_pred hhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccc--hhhhcCCCCcEEeccccccccccccc-----c
Q 044085 550 HVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLP--ESVSTLYNLQTLILERCYRLKKLFPD-----I 622 (1151)
Q Consensus 550 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~-----~ 622 (1151)
.+...|+.|+||.|+-|.|+.+ +.+..++.|+.|.|+.|.|..+- ..+.+|++|++|-|..|.-...-+.. +
T Consensus 35 sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 3467899999999999999988 45788999999999999999773 34789999999999998655554433 6
Q ss_pred ccCCccCeee
Q 044085 623 GNLTNLRHLK 632 (1151)
Q Consensus 623 ~~L~~L~~L~ 632 (1151)
..|++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 6788999887
No 282
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.44 E-value=0.1 Score=54.85 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=54.4
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhcc---CCCceEEEEeCCCCCHHHHHHHHHHHhcCC----------CCCcch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEH---FPDFRAWAYVSEDFDAVGITKVILQAAVGS----------VDVNDL 234 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~----------~~~~~~ 234 (1151)
.-.++.|+|.+|+|||++|.+++........ =...++|+.....++...+.+. .+..... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~-~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQL-AVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHH-HHHhccchhhhhccEEEEeCCCH
Confidence 4569999999999999999998764322210 0145789988877776555433 2222100 012344
Q ss_pred HHHHHHHHHHhc----CCceEEEEeCCC
Q 044085 235 NLLQLQLENQLK----NKKFLLVLDDMW 258 (1151)
Q Consensus 235 ~~~~~~l~~~l~----~k~~LlVlDdvw 258 (1151)
++....+.+... .+.-++|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 555555554442 344589999983
No 283
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.43 E-value=0.046 Score=59.30 Aligned_cols=84 Identities=18% Similarity=0.101 Sum_probs=54.6
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcchHHHHHH
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS------VDVNDLNLLQLQ 240 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~ 240 (1151)
+.-+++-|+|++|+||||||.+++.... ..- ..++|++..+.++.. .+++++-. ......++....
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~--~~g-~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~ 124 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQ--KAG-GTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEI 124 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcC-CcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 3557999999999999999999877432 333 567898877766653 23333210 122344555555
Q ss_pred HHHHhc-CCceEEEEeCCC
Q 044085 241 LENQLK-NKKFLLVLDDMW 258 (1151)
Q Consensus 241 l~~~l~-~k~~LlVlDdvw 258 (1151)
+...++ +..-+||+|.|-
T Consensus 125 ~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 125 AETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHhhccCCcEEEEcchh
Confidence 555554 456799999983
No 284
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.41 E-value=0.058 Score=58.93 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=41.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhc---cCCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEE---HFPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
.-+++-|+|.+|+|||+|+.+++-...... .-...++||+..+.|+++++.+ ++++++
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 457889999999999999988764332211 1115789999999999888764 455544
No 285
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.38 E-value=0.092 Score=52.99 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=19.6
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
||.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 286
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.38 E-value=0.1 Score=55.11 Aligned_cols=86 Identities=16% Similarity=0.114 Sum_probs=53.6
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc---CC---------------
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV---GS--------------- 228 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~---~~--------------- 228 (1151)
+.-.++.|+|.+|+|||++|.++.... .+ += ..++|++..+. ..++.+.+ .+++ ..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g-~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~ 96 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QG-KKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTE 96 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CC-CEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccc
Confidence 345789999999999999999986532 22 22 57888888654 34444443 2221 00
Q ss_pred ---CCCcchHHHHHHHHHHhcC-CceEEEEeCCC
Q 044085 229 ---VDVNDLNLLQLQLENQLKN-KKFLLVLDDMW 258 (1151)
Q Consensus 229 ---~~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw 258 (1151)
......+.+...+...+.. +.-++|+|.+-
T Consensus 97 ~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 97 GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666654 56689999973
No 287
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.37 E-value=0.26 Score=56.36 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=23.0
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.+.+|.++|..|+||||+|..++...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998744
No 288
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.35 E-value=0.056 Score=58.67 Aligned_cols=83 Identities=18% Similarity=0.109 Sum_probs=54.5
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcchHHHHHH
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS------VDVNDLNLLQLQ 240 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~ 240 (1151)
+.-+++-|+|++|+||||||.+++.... ..- ..++||+..+.+++. .+++++.. ....+.++....
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~--~~g-~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i 124 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQ--KLG-GTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEI 124 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcC-CCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHH
Confidence 3557899999999999999999877432 333 678899887776653 23333210 122344555555
Q ss_pred HHHHhc-CCceEEEEeCC
Q 044085 241 LENQLK-NKKFLLVLDDM 257 (1151)
Q Consensus 241 l~~~l~-~k~~LlVlDdv 257 (1151)
+...++ +..-+||+|.|
T Consensus 125 ~~~li~s~~~~lIVIDSv 142 (325)
T cd00983 125 ADSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHHhccCCCEEEEcch
Confidence 555554 45678999997
No 289
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.33 E-value=0.073 Score=57.54 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVR 194 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~ 194 (1151)
..++++|+|+.|+||||++..++....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887443
No 290
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.95 Score=45.52 Aligned_cols=193 Identities=16% Similarity=0.131 Sum_probs=98.7
Q ss_pred cccc-chhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 143 EVYG-REKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 143 ~~vg-r~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
++|| .+...++|.+.+.-.... +-.+++-+.++|++|.|||-||++|+++ ....|+.||+.
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh--------t~c~firvsgs--- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH--------TDCTFIRVSGS--- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh--------cceEEEEechH---
Confidence 3555 466666666655322110 2345677889999999999999999984 23455777753
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCC-----------ChhhHH---hhhccccCC--CC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTE-----------NYDDWT---NLCKPFKAG--LP 277 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~-----------~~~~~~---~l~~~l~~~--~~ 277 (1151)
++.+..+.+- ....+.+.-.- ..-+-.|..|.+.+- +.+... ++...+... .+
T Consensus 216 -elvqk~igeg---------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk 285 (404)
T KOG0728|consen 216 -ELVQKYIGEG---------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK 285 (404)
T ss_pred -HHHHHHhhhh---------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc
Confidence 2222221110 01111111111 234677888877431 111111 122222221 24
Q ss_pred CcEEEEecCcccccccc----cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 278 GSKIIVTTRNEDVSSMV----TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 278 gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
.-|||..|..-++.+.. +...+.++..+-+++.-.++++-+.-.- +...--++..+|+++....|.--.++.+=|
T Consensus 286 nikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm-nl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 286 NIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred ceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-chhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 56788777655554321 1122367777777776677776554221 112223455666655444444445555666
Q ss_pred HHhc
Q 044085 354 GLLR 357 (1151)
Q Consensus 354 ~~L~ 357 (1151)
++.+
T Consensus 365 gm~a 368 (404)
T KOG0728|consen 365 GMYA 368 (404)
T ss_pred hHHH
Confidence 6653
No 291
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.32 E-value=0.11 Score=55.14 Aligned_cols=80 Identities=24% Similarity=0.226 Sum_probs=48.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
.-+.++|.+|+|||.||.++.+... +.. ..+.++++. ++..++...... ......|.+.++ +-
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~------el~~~Lk~~~~~-------~~~~~~l~~~l~-~~ 168 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAP------DLLSKLKAAFDE-------GRLEEKLLRELK-KV 168 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHH------HHHHHHHHHHhc-------CchHHHHHHHhh-cC
Confidence 3689999999999999999999544 222 346666543 344444443321 111222322222 24
Q ss_pred eEEEEeCCCCCChhhHH
Q 044085 250 FLLVLDDMWTENYDDWT 266 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~ 266 (1151)
=|+||||+--.....|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 48999999765555554
No 292
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.32 E-value=0.059 Score=62.93 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=44.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeC
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVS 209 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs 209 (1151)
.+++--.+-++++..||..... +....+++.+.|++|+||||.++.+++.. .| +.+-|.+..
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~-~v~Ew~np~ 80 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GF-EVQEWINPV 80 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CC-eeEEecCCC
Confidence 3455556778899999976432 22335699999999999999999999843 35 666686543
No 293
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.32 E-value=0.047 Score=59.14 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+..++|+|++|.|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999994
No 294
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.32 E-value=0.04 Score=55.30 Aligned_cols=77 Identities=21% Similarity=0.179 Sum_probs=43.4
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc---CCCCCcchHHHHHHHHH
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV---GSVDVNDLNLLQLQLEN 243 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~ 243 (1151)
.++.+|+|.|.+|+||||+|+.++.. ++..+ ++-++.. +|-...-......... ......+.+-+.+.|..
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~---~~~I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~ 79 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK---VVVISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKD 79 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc---ceEeecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHH
Confidence 35679999999999999999999983 32222 1111111 1111111111111111 22344566777778888
Q ss_pred HhcCCc
Q 044085 244 QLKNKK 249 (1151)
Q Consensus 244 ~l~~k~ 249 (1151)
.+++++
T Consensus 80 L~~g~~ 85 (218)
T COG0572 80 LKQGKP 85 (218)
T ss_pred HHcCCc
Confidence 888877
No 295
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.29 E-value=0.095 Score=57.95 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=39.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccC---CCceEEEEeCCCCCHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF---PDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
...++-|+|.+|+||||+|.+++......... ...++||+..+.|+..++.+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 45789999999999999999997754321111 136899999888888776543
No 296
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.33 Score=58.07 Aligned_cols=183 Identities=16% Similarity=0.125 Sum_probs=101.8
Q ss_pred CCccccchhhHHH---HHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEA---LVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~---l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
-.++.|-++.+++ ++++|..++.- +..-++=+-++|++|.|||-||++++.... +-|+++|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg--------VPF~svSGS--- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG--------VPFFSVSGS--- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC--------CceeeechH---
Confidence 3568888875555 55555443210 223456688999999999999999998432 234566643
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCC---------------ChhhHHhhhccccCCCC-
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTE---------------NYDDWTNLCKPFKAGLP- 277 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~---------------~~~~~~~l~~~l~~~~~- 277 (1151)
+.++.+.... ..+.+.|...- ...+..|.+|++... ......++...+.....
T Consensus 379 -----EFvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 -----EFVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred -----HHHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 1222222110 11112222222 345778888877321 01223344433333322
Q ss_pred -CcEEEEecCcccccccc----cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhH
Q 044085 278 -GSKIIVTTRNEDVSSMV----TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLA 348 (1151)
Q Consensus 278 -gs~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 348 (1151)
+--+|-+|+..++.+.. +...+.+.+..-+..+-.++|..++-.... ..+..++++ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHH
Confidence 33345566666654321 122337788888888888999988743322 234556777 88888887744
No 297
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.25 E-value=0.00081 Score=80.48 Aligned_cols=183 Identities=21% Similarity=0.317 Sum_probs=90.7
Q ss_pred ccCCCCCccEEEEeCC--cccccc-----CCCCCCCccEEEEcCCCCcc-cCcccc-CCCCccceeeecCCCC-Ccc-CC
Q 044085 936 GLHKLSHITTISMYGS--RLVSFA-----EGGLPSNLCSLTLFGCRYLT-ALPNGI-YNLSSLQHLEIRACPR-IAS-IP 1004 (1151)
Q Consensus 936 ~l~~l~~L~~L~ls~n--~l~~~~-----~~~~~~~L~~L~L~~n~~~~-~l~~~l-~~l~~L~~L~L~~~~~-~~~-~~ 1004 (1151)
....++.|+.|+++++ .+...+ ......+|+.|+++.+...+ ..-..+ ..+++|++|.+.+|.. +.. +.
T Consensus 209 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~ 288 (482)
T KOG1947|consen 209 LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLV 288 (482)
T ss_pred HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHH
Confidence 3456788888888762 111111 11112578888888887432 211122 2377888888888873 221 22
Q ss_pred CCCCCCCCccEEEecCCC-ccccccccCCCCCCCcceEEeccCC--CCcccc-----cCCC-CCcceEEecCCCCCCcCC
Q 044085 1005 EEVGFPPNITELHIEGPN-ICKLFFDLGFHNLTSVRDLFIKDGL--EDEVSF-----QKLP-NSLVKLNIREFPGLESLS 1075 (1151)
Q Consensus 1005 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~-----~~~~-~~L~~L~l~~c~~l~~l~ 1075 (1151)
.....+++|++|+|++|. +++........++++|+.|.+..+. ..+..+ .... ..+..+.+.+|++++.+.
T Consensus 289 ~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~ 368 (482)
T KOG1947|consen 289 SIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLS 368 (482)
T ss_pred HHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhh
Confidence 223467788888888887 4332111113446666665554432 111111 1122 255556666666666554
Q ss_pred --CCCCCCCCC-eeeEeCCCCCC-cCCCC-CCCCCcceEeeccCchHHH
Q 044085 1076 --FVRNLTSLE-RLTLCECPNLI-SLPKN-GLPPSLVYVDIYSCPYLEE 1119 (1151)
Q Consensus 1076 --~l~~l~~L~-~L~l~~c~~l~-~l~~~-~~~~sL~~L~i~~c~~L~~ 1119 (1151)
... ..... .+.+.+||.++ .+... ....+++.|++..|...+.
T Consensus 369 l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 369 LSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred hhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccc
Confidence 112 22222 45555665552 11111 1112256666666654443
No 298
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.24 E-value=0.062 Score=54.73 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=42.6
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCC---ceEEEEeCCCCCHHHHHHHHHHHhc-----CCCCCcchHHHHHHHH
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPD---FRAWAYVSEDFDAVGITKVILQAAV-----GSVDVNDLNLLQLQLE 242 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~---~~~wv~vs~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~~~~l~ 242 (1151)
||+|.|.+|+||||+|+.+...... ... . ....+.....+........ -.... .....-+.+.+.+.|.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~-~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~ 77 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGI-PAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLK 77 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTT-TCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCc-CccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHH
Confidence 6999999999999999999884321 112 1 1223322222222222211 11111 1123456677777777
Q ss_pred HHhcCCceEE
Q 044085 243 NQLKNKKFLL 252 (1151)
Q Consensus 243 ~~l~~k~~Ll 252 (1151)
...+++..-+
T Consensus 78 ~L~~g~~i~~ 87 (194)
T PF00485_consen 78 ALKNGGSIEI 87 (194)
T ss_dssp HHHTTSCEEE
T ss_pred HHhCCCcccc
Confidence 7666665444
No 299
>PRK07667 uridine kinase; Provisional
Probab=95.24 E-value=0.024 Score=57.54 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 151 KEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456777775544 24479999999999999999999884
No 300
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.24 E-value=0.091 Score=57.64 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=39.2
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccC---CCceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF---PDFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
...++.|+|.+|+||||||..++......... ...++|++-.+.++..++ ..+++.+
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 45799999999999999999987633221111 035689998888887764 3344443
No 301
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.23 E-value=0.011 Score=35.41 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.7
Q ss_pred cccEEEecCccccccCccccCC
Q 044085 557 RLRVLSLCGYWILQLPNDIGEL 578 (1151)
Q Consensus 557 ~Lr~L~L~~~~i~~lp~~i~~l 578 (1151)
+|++|||++|+++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999878754
No 302
>PRK09354 recA recombinase A; Provisional
Probab=95.19 E-value=0.07 Score=58.41 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=55.8
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcchHHHHHH
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS------VDVNDLNLLQLQ 240 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~ 240 (1151)
+.-+++-|+|+.|+||||||.+++.... ..- ..++||.....++.. .+++++.. ......++....
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~--~~G-~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i 129 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQ--KAG-GTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEI 129 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcC-CcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHH
Confidence 3557999999999999999999887433 333 678899888777753 23333311 122345555555
Q ss_pred HHHHhc-CCceEEEEeCCC
Q 044085 241 LENQLK-NKKFLLVLDDMW 258 (1151)
Q Consensus 241 l~~~l~-~k~~LlVlDdvw 258 (1151)
+...++ ++.-+||+|.|-
T Consensus 130 ~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 130 ADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHhhcCCCCEEEEeChh
Confidence 555554 456799999983
No 303
>PRK14974 cell division protein FtsY; Provisional
Probab=95.18 E-value=0.2 Score=55.04 Aligned_cols=99 Identities=17% Similarity=0.043 Sum_probs=50.4
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH--HHHHHHHHHhcCC----CCCcchHH-HHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV--GITKVILQAAVGS----VDVNDLNL-LQLQ 240 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~--~~~~~i~~~~~~~----~~~~~~~~-~~~~ 240 (1151)
+..+|.++|+.|+||||++..++.... ...+ .++.+. .+.+... +-++.....++.. ....+... ....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~--~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF--SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC--eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 467999999999999998888887332 1223 233333 3334332 2234444444411 11122222 2233
Q ss_pred HHHHhcCCceEEEEeCCCCC--ChhhHHhhhc
Q 044085 241 LENQLKNKKFLLVLDDMWTE--NYDDWTNLCK 270 (1151)
Q Consensus 241 l~~~l~~k~~LlVlDdvw~~--~~~~~~~l~~ 270 (1151)
+........=++++|-.-.. +...++++..
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~ 246 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMHTDANLMDELKK 246 (336)
T ss_pred HHHHHhCCCCEEEEECCCccCCcHHHHHHHHH
Confidence 33322222238888988543 2334455443
No 304
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.16 E-value=0.26 Score=47.46 Aligned_cols=116 Identities=16% Similarity=0.084 Sum_probs=63.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC---CCCHHHHHHHHHHHhc----CCC---CCcch-H---
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE---DFDAVGITKVILQAAV----GSV---DVNDL-N--- 235 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~---~~~~~~~~~~i~~~~~----~~~---~~~~~-~--- 235 (1151)
..|-|++-.|.||||+|....- +...+= ..+.++..-. ......+++.+ ..+. ... ...+. +
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g-~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~ 78 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHG-YRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIA 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCC-CeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHH
Confidence 3677888889999999988776 333332 3344443322 23344444443 1111 000 00111 1
Q ss_pred ---HHHHHHHHHhcC-CceEEEEeCCCC---CChhhHHhhhccccCCCCCcEEEEecCccc
Q 044085 236 ---LLQLQLENQLKN-KKFLLVLDDMWT---ENYDDWTNLCKPFKAGLPGSKIIVTTRNED 289 (1151)
Q Consensus 236 ---~~~~~l~~~l~~-k~~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 289 (1151)
...+..++.+.. +-=|+|||++-. -.....+.+...+.....+.-||+|.|+..
T Consensus 79 ~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 79 AAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 112233444444 445999999832 122344566666666666789999999853
No 305
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.13 E-value=0.032 Score=57.49 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=58.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCC----CCcchHHHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSV----DVNDLNLLQLQLENQ 244 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~~ 244 (1151)
.+++.|+|+.|.||||+.+.+...... .+- ...+|..- .. ......+...+.... .......-..++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~-G~~v~a~~---~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~ 102 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHI-GSFVPADS---AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKA 102 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhC-CCeeEcCC---cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHH
Confidence 378899999999999999998753221 111 12222110 00 001111111111100 111122222222222
Q ss_pred --hcCCceEEEEeCCCCC-ChhhHH----hhhccccCC-CCCcEEEEecCcccccccc
Q 044085 245 --LKNKKFLLVLDDMWTE-NYDDWT----NLCKPFKAG-LPGSKIIVTTRNEDVSSMV 294 (1151)
Q Consensus 245 --l~~k~~LlVlDdvw~~-~~~~~~----~l~~~l~~~-~~gs~iivTtr~~~v~~~~ 294 (1151)
+..++-|+++|..-.. +..+.. ++...+... ..+..+|+||.+.+++...
T Consensus 103 l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 103 LRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 2467899999998543 222211 222233222 2345899999988776654
No 306
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.12 E-value=0.23 Score=60.54 Aligned_cols=158 Identities=18% Similarity=0.161 Sum_probs=80.3
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
.++.|.+..++++.+.+.....+ +..-.+-|.++|++|+|||++|+.+.+.. ...| +.++..
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f------~~is~~---- 219 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF------FTISGS---- 219 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE------EEEehH----
Confidence 35677776666655544321110 01112348899999999999999998832 2223 222211
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC----------hhhHHh----hhccccC--CCCCc
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN----------YDDWTN----LCKPFKA--GLPGS 279 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~----------~~~~~~----l~~~l~~--~~~gs 279 (1151)
++.. ... ..........+...-...+.+|++|+++.-. ...+.. +...+.. ...+.
T Consensus 220 ~~~~----~~~----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 220 DFVE----MFV----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred HhHH----hhh----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 1110 000 0111122223333334568899999984310 112222 2211211 12345
Q ss_pred EEEEecCccccccc-cc---CCCceeecCCCChhhhHHHHHHhh
Q 044085 280 KIIVTTRNEDVSSM-VT---TPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 280 ~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
-||.||...+..+. .. ...+.+.+...+.++-.+++..+.
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 56667876654332 11 112367788888777778877765
No 307
>PTZ00301 uridine kinase; Provisional
Probab=95.11 E-value=0.03 Score=57.22 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.3
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46899999999999999999987
No 308
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.11 E-value=0.014 Score=58.88 Aligned_cols=117 Identities=20% Similarity=0.123 Sum_probs=57.0
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC----CCCcchHHHHHHHHHHhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS----VDVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~l~ 246 (1151)
++.|+|+.|.||||+.+.+.-.... .+- .+.+|..-..- .....++..+... ........-..++...+.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~l-a~~-G~~v~a~~~~~----~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~ 74 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIM-AQI-GSFVPAESAEL----PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILK 74 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH-HHh-CCCeeehheEe----cccceEEEEeCCCCchhccccHHHHHHHHHHHHHH
Confidence 4679999999999999999853321 111 22122110000 0000111111100 011122222233444454
Q ss_pred C--CceEEEEeCCCCC-ChhhHHh----hhccccCCCCCcEEEEecCcccccccc
Q 044085 247 N--KKFLLVLDDMWTE-NYDDWTN----LCKPFKAGLPGSKIIVTTRNEDVSSMV 294 (1151)
Q Consensus 247 ~--k~~LlVlDdvw~~-~~~~~~~----l~~~l~~~~~gs~iivTtr~~~v~~~~ 294 (1151)
. ++-++++|..-.. +..+-.. +...+.. ..++.+|++|...++...+
T Consensus 75 ~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 75 NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 4 8899999998532 2221122 2222222 1367899999988776554
No 309
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.10 E-value=0.22 Score=49.65 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEecCCCccHHHHHHHHhhch
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
++.++|++|+||||+++.++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998743
No 310
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.10 E-value=0.068 Score=59.24 Aligned_cols=134 Identities=13% Similarity=0.030 Sum_probs=72.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
..++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.++...... - ...+.|++..- +...+-..+
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~~s~r~--~-~pfv~v~c~~~-~~~~~~~~l 77 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHYLSSRW--Q-GPFISLNCAAL-NENLLDSEL 77 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhCCcc--C-CCeEEEeCCCC-CHHHHHHHH
Confidence 3588999999888888766532 22347899999999999999998632111 0 12234444432 222222222
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTRN 287 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 287 (1151)
............ ......+ .....=.++||+|..-....+..+...+..+. ...|||.||..
T Consensus 78 fg~~~~~~~g~~-~~~~g~l---~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 78 FGHEAGAFTGAQ-KRHPGRF---ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred ccccccccCCcc-cccCCch---hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 111100000000 0001111 12234468899997766666777766554332 13588888764
No 311
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.06 E-value=0.1 Score=64.58 Aligned_cols=133 Identities=15% Similarity=0.107 Sum_probs=73.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH-
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV- 220 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~- 220 (1151)
..++|+...+..+.+.+..-.. .-.-|.|+|..|+|||++|+.+++.... .. ...+.+++..-. ...+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~--~~~v~i~c~~~~--~~~~~~~ 446 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR-NN--RRMVKMNCAAMP--AGLLESD 446 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC-CC--CCeEEEecccCC--hhHhhhh
Confidence 4689999988888777664331 2235789999999999999999884321 11 233444444321 122221
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCc
Q 044085 221 ILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTRN 287 (1151)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 287 (1151)
+.......... ........+ -....=.++||+|..-.......+...+..+. .+.|||.||..
T Consensus 447 lfg~~~~~~~g-~~~~~~g~l---e~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 447 LFGHERGAFTG-ASAQRIGRF---ELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred hcCcccccccc-cccchhhHH---HhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11111000000 001111112 12334679999997766666667766554321 24588888864
No 312
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.15 Score=62.32 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=71.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCC--CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGR--GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~--~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
.++|.++.+..|.+.+.....+... ......+.|+.|+|||-||++++. .+ |..-..+|.+.-. +...
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~---Fgse~~~IriDms----e~~e- 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YV---FGSEENFIRLDMS----EFQE- 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HH---cCCccceEEechh----hhhh-
Confidence 5778888888888888766542222 456777899999999999999988 33 3233444444211 1111
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHHhcCCce-EEEEeCCCCCChhhHHhhhccccCC
Q 044085 221 ILQAAVGSVDVNDLNLLQLQLENQLKNKKF-LLVLDDMWTENYDDWTNLCKPFKAG 275 (1151)
Q Consensus 221 i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~ 275 (1151)
+.+.++.+..... ......|-+.++.++| +|+||||...+......+...+..|
T Consensus 633 vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~G 687 (898)
T KOG1051|consen 633 VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRG 687 (898)
T ss_pred hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcC
Confidence 2222222111111 1223366777777776 6668999766666666555555443
No 313
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.01 E-value=0.12 Score=51.89 Aligned_cols=116 Identities=17% Similarity=0.087 Sum_probs=59.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc--CCC--------------CCcc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV--GSV--------------DVND 233 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~--~~~--------------~~~~ 233 (1151)
.+++|+|..|.|||||++.+..-.. .. ...+++. .. +.......+...+. .+. ....
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~-~G~i~~~--g~-~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLK---PQ-QGEITLD--GV-PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCC---CC-CCEEEEC--CE-EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 4899999999999999999987432 11 2333321 11 11111111111111 100 0011
Q ss_pred hHHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCcccccc
Q 044085 234 LNLLQLQLENQLKNKKFLLVLDDMWTE-NYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSS 292 (1151)
Q Consensus 234 ~~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 292 (1151)
-+...-.+.+.+-.++=++++|+.... |....+.+...+.....+..||++|.+.....
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 122223455666678889999997532 23333333333332223667888887766544
No 314
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.01 E-value=0.072 Score=58.99 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=67.6
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh-hhccCCCceEEEEeCCCCCHHHHHHHHH
Q 044085 144 VYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR-VEEHFPDFRAWAYVSEDFDAVGITKVIL 222 (1151)
Q Consensus 144 ~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~f~~~~~wv~vs~~~~~~~~~~~i~ 222 (1151)
++|....+.++.+.+..-.. .-.-|.|+|..|+||+++|+.+++... ....| +-|+++.-. ...+...+
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pf----v~vnc~~~~--~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYLSKRWQGPL----VKLNCAALS--ENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHhcCccCCCe----EEEeCCCCC--hHHHHHHH
Confidence 46777777777777665432 223478999999999999999987332 11122 334444321 12222211
Q ss_pred -HHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCc
Q 044085 223 -QAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTRN 287 (1151)
Q Consensus 223 -~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 287 (1151)
........... .. ..........-.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 71 fG~~~g~~~ga~-~~---~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~ 143 (329)
T TIGR02974 71 FGHEAGAFTGAQ-KR---HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNA 143 (329)
T ss_pred hccccccccCcc-cc---cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechh
Confidence 10000000000 00 0001112345678999997666666666665554331 23578888753
No 315
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.46 Score=54.36 Aligned_cols=179 Identities=16% Similarity=0.144 Sum_probs=95.4
Q ss_pred cchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 146 GREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
|.++-+.++...+...... +-..+.-|.++|++|.|||-||++|+| +.+.+| ++|-++ +++
T Consensus 515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVAN--Eag~NF------isVKGP----ELl 582 (802)
T KOG0733|consen 515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVAN--EAGANF------ISVKGP----ELL 582 (802)
T ss_pred cHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhh--hccCce------EeecCH----HHH
Confidence 4455555555554443211 112345678999999999999999999 555666 566543 222
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-----Chhh------HHhhhccccCC--CCCcEEEEec
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-----NYDD------WTNLCKPFKAG--LPGSKIIVTT 285 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----~~~~------~~~l~~~l~~~--~~gs~iivTt 285 (1151)
..... ++.........+.=..-+++|.+|.+..- +... ..++...+... ..|--||-.|
T Consensus 583 NkYVG--------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 583 NKYVG--------ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred HHHhh--------hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeec
Confidence 22111 11111222222223467999999998431 1112 23344333332 2455566666
Q ss_pred Ccccccc-ccc---CCCceeecCCCChhhhHHHHHHhhcCCC-CCCCCchHHHHHHHHHHHcCCCh
Q 044085 286 RNEDVSS-MVT---TPSAAYSLENLLRDDCLSIFVRHSLGRT-DFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 286 r~~~v~~-~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
..+++-+ .+- .-....-+..-+.+|-.++++...-... ....+-++.++|+. .+|.|..
T Consensus 655 NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 655 NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred CCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 5555533 221 1122666777777888888877664211 11334456666653 4566654
No 316
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.00 E-value=0.66 Score=50.27 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=90.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchh-------hhccCCCceEEEEe-CCCCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVR-------VEEHFPDFRAWAYV-SEDFDAVGITKVILQAAVGSVDVNDLNLLQLQ 240 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~-------~~~~f~~~~~wv~v-s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 240 (1151)
..+.-++|..|.||+++|..+.+..- ..+..|+...++.. .+....+++. ++.+.+..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~------------- 83 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF------------- 83 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc-------------
Confidence 35677999999999999999877320 01112223333322 1112222221 22222210
Q ss_pred HHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEec-CcccccccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 241 LENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTT-RNEDVSSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 241 l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTt-r~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
...-.+++=++|+||+...+......+...+....+.+.+|++| ....+........+.+++.++++++..+.+...
T Consensus 84 -~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~- 161 (299)
T PRK07132 84 -SSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK- 161 (299)
T ss_pred -CCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-
Confidence 00012467788899987666667777877777766677776655 444454444443448999999999998777653
Q ss_pred cCCCCCCCCchHHHHHHHHHHHcCCChhHHHH
Q 044085 320 LGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKT 351 (1151)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 351 (1151)
+ .+ .+.+..++.-.+|.=-|+..
T Consensus 162 -~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 162 -N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred -C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 1 11 14466666666663345444
No 317
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.018 Score=56.89 Aligned_cols=26 Identities=46% Similarity=0.525 Sum_probs=22.9
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVR 194 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~ 194 (1151)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 35899999999999999999999543
No 318
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.95 E-value=0.039 Score=52.78 Aligned_cols=36 Identities=31% Similarity=0.101 Sum_probs=26.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEE
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAY 207 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~ 207 (1151)
..||.|+|.+|+||||||+++.+. ....- ..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~--L~~~g-~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR--LFARG-IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH--HHHTT-S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH--HHHcC-CcEEEec
Confidence 358999999999999999999994 33333 3444443
No 319
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.92 E-value=0.03 Score=58.06 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-|.|.|++|+||||+|+.+.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999884
No 320
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.89 E-value=0.0011 Score=65.12 Aligned_cols=87 Identities=15% Similarity=0.223 Sum_probs=77.0
Q ss_pred hcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCe
Q 044085 551 VIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRH 630 (1151)
Q Consensus 551 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~ 630 (1151)
-+..++..++||++.|.+..+-..|..+..|..||++.|.|..+|.++..+..+..+++..| ..+..|.++.+++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 35567788999999998888888888899999999999999999999999999999999888 78889999999999999
Q ss_pred eecCCCCc
Q 044085 631 LKNSHSNL 638 (1151)
Q Consensus 631 L~l~~~~~ 638 (1151)
+++-+|.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99988874
No 321
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.88 E-value=0.0059 Score=61.68 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=65.0
Q ss_pred cccCCCcccEEEccccccc-----ccchhhhcCCCCcEEeccccc----------cccccccccccCCccCeeecCCCCc
Q 044085 574 DIGELKHLRYLEFSRTAIE-----VLPESVSTLYNLQTLILERCY----------RLKKLFPDIGNLTNLRHLKNSHSNL 638 (1151)
Q Consensus 574 ~i~~l~~Lr~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~----------~l~~lp~~~~~L~~L~~L~l~~~~~ 638 (1151)
.+..+..+..++||+|.|. .+...|.+-.+|+..+++.-. .+..+-+.+-+|++|+..++|+|-+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3445788999999999987 355567778899999887641 1222334467899999999999997
Q ss_pred cccCccc----ccCccCCCccCeeEeccC
Q 044085 639 FEEMPLR----IGKLTSLRTLAKFAVGKS 663 (1151)
Q Consensus 639 ~~~~p~~----i~~L~~L~~L~~~~~~~~ 663 (1151)
....|.. +++-+.|.+|.+.+++..
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 6666654 456677777777666543
No 322
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.83 E-value=0.18 Score=53.99 Aligned_cols=87 Identities=16% Similarity=0.080 Sum_probs=46.4
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH--HHHHHHHHHhcC----CCCCcch-HHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV--GITKVILQAAVG----SVDVNDL-NLLQLQ 240 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~--~~~~~i~~~~~~----~~~~~~~-~~~~~~ 240 (1151)
..+++.++|++|+||||++..++... ...- ..+++++. +.+... +-++...+..+. .....+. ......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g-~~V~li~~-D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKL--KKQG-KSVLLAAG-DTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH--HhcC-CEEEEEeC-CCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 45799999999999999999988743 2221 34455543 334332 222223333331 1111222 222334
Q ss_pred HHHHhcCCceEEEEeCCC
Q 044085 241 LENQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 241 l~~~l~~k~~LlVlDdvw 258 (1151)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444445577888764
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.82 E-value=0.18 Score=48.27 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=56.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
.+++|+|..|.|||||++.+..... .. ...+|+.-. ..+.--.+...-+...-.+.+.+..++
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~-~G~i~~~~~-------------~~i~~~~~lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PD-EGIVTWGST-------------VKIGYFEQLSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CC-ceEEEECCe-------------EEEEEEccCCHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999988432 11 333333110 000000001111222234556666777
Q ss_pred eEEEEeCCCC-CChhhHHhhhccccCCCCCcEEEEecCccccc
Q 044085 250 FLLVLDDMWT-ENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVS 291 (1151)
Q Consensus 250 ~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 291 (1151)
-++++|+--. -|....+.+...+... +..||++|.+....
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 8999998742 2334444444444432 24677777765544
No 324
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.81 E-value=0.3 Score=52.98 Aligned_cols=52 Identities=21% Similarity=0.144 Sum_probs=36.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
.++.|.|.+|+||||+|.+++.+... .....++|++... +..++...+....
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~--~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLIT--QHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH--hcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 48889999999999999998774322 2114678887765 3556666665543
No 325
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.51 Score=56.15 Aligned_cols=134 Identities=17% Similarity=0.082 Sum_probs=76.6
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (1151)
...+.+-++|++|.|||.||+++++ ....+| +.+... +++.. .-.+.............+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f------i~v~~~----~l~sk--------~vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF------ISVKGS----ELLSK--------WVGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE------EEeeCH----HHhcc--------ccchHHHHHHHHHHHHHc
Confidence 3456889999999999999999999 433445 333221 11111 111222333344444556
Q ss_pred CCceEEEEeCCCC-----C-C-----hhhHHhhhccccCCC--CCcEEEEecCccccccc-c-c--CCCceeecCCCChh
Q 044085 247 NKKFLLVLDDMWT-----E-N-----YDDWTNLCKPFKAGL--PGSKIIVTTRNEDVSSM-V-T--TPSAAYSLENLLRD 309 (1151)
Q Consensus 247 ~k~~LlVlDdvw~-----~-~-----~~~~~~l~~~l~~~~--~gs~iivTtr~~~v~~~-~-~--~~~~~~~l~~L~~~ 309 (1151)
..+..|.+|++.. . + .....++...+..-. .+..||-||...+.... + . .-...+.+..-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 7899999999832 0 0 012233333333222 33345556655443321 1 1 22337888889999
Q ss_pred hhHHHHHHhhc
Q 044085 310 DCLSIFVRHSL 320 (1151)
Q Consensus 310 ~~~~lf~~~~~ 320 (1151)
+..+.|..+.-
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999988874
No 326
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.76 E-value=0.021 Score=53.72 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=19.5
Q ss_pred EEEecCCCccHHHHHHHHhhc
Q 044085 172 IPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~ 192 (1151)
|+|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999885
No 327
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.75 E-value=0.22 Score=51.61 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||.+.+..
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 328
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.75 E-value=0.023 Score=46.30 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 329
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.74 E-value=0.11 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.430 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
....+|+|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999983
No 330
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.73 E-value=0.066 Score=59.70 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=66.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVIL 222 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~ 222 (1151)
.++|+++....+...+.... -+.+.|.+|+|||+||+.+.. .....| .+|.+.......+++....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~--~l~~~~----~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALAR--ALGLPF----VRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHH--HhCCCe----EEEecCCCCCHHHhcCchh
Confidence 48898888887777776543 478999999999999999998 333333 5666777777666654332
Q ss_pred HHhcCCCCCcchHHHHHHHHHHhc-----CCceEEEEeCCCCCChhhHHhhhcccc
Q 044085 223 QAAVGSVDVNDLNLLQLQLENQLK-----NKKFLLVLDDMWTENYDDWTNLCKPFK 273 (1151)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~l~-----~k~~LlVlDdvw~~~~~~~~~l~~~l~ 273 (1151)
-...... ..-.++.. .-+.++++|.++.........+...+.
T Consensus 91 ~~~~~~~---------~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~ 137 (329)
T COG0714 91 YAALLLE---------PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALE 137 (329)
T ss_pred Hhhhhcc---------CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHh
Confidence 2211000 00000001 111589999998876655555554443
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.73 E-value=0.18 Score=56.43 Aligned_cols=25 Identities=28% Similarity=0.220 Sum_probs=22.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhhch
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..++.++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998743
No 332
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.71 E-value=0.38 Score=55.16 Aligned_cols=85 Identities=20% Similarity=0.128 Sum_probs=44.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH--HHHHHHHHHHhc-CCCCCcchHHHHHHHHHHhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA--VGITKVILQAAV-GSVDVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~--~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~l~ 246 (1151)
+++.++|++|+||||++..++........- ..+..|+.. ++.. .+-++...+.++ ......+.+++...+.+ +.
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~~V~li~~D-~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGK-KKVALITLD-TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECC-ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 589999999999999998887643211221 345556543 2221 111222222222 11112333444444443 22
Q ss_pred CCceEEEEeCCC
Q 044085 247 NKKFLLVLDDMW 258 (1151)
Q Consensus 247 ~k~~LlVlDdvw 258 (1151)
..=+|++|..-
T Consensus 299 -~~DlVlIDt~G 309 (424)
T PRK05703 299 -DCDVILIDTAG 309 (424)
T ss_pred -CCCEEEEeCCC
Confidence 35678888663
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.71 E-value=0.091 Score=51.72 Aligned_cols=114 Identities=16% Similarity=0.087 Sum_probs=60.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC--CCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE--DFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
.+++|+|..|.|||||.+.++.... .. ...+++.-.. ..+..+.. ...+.-..+...-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~---~~-~G~v~~~g~~~~~~~~~~~~---~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK---PD-SGEILVDGKEVSFASPRDAR---RAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CC-CeEEEECCEECCcCCHHHHH---hcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 4899999999999999999987432 22 3344432111 11111111 11111000112222333345666677
Q ss_pred CceEEEEeCCCC-CChhhHHhhhccccCC-CCCcEEEEecCcccc
Q 044085 248 KKFLLVLDDMWT-ENYDDWTNLCKPFKAG-LPGSKIIVTTRNEDV 290 (1151)
Q Consensus 248 k~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v 290 (1151)
++-++++|+--. -|....+.+...+... ..|.-||++|.+...
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 888999998743 2333444444444332 236678888877653
No 334
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.67 E-value=0.19 Score=49.90 Aligned_cols=113 Identities=23% Similarity=0.289 Sum_probs=58.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhchh---hhc---cCCC-ceEEEEeCCCCCHHHHHHHHHHHhc-CCC--C--Cc--ch-
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVR---VEE---HFPD-FRAWAYVSEDFDAVGITKVILQAAV-GSV--D--VN--DL- 234 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~---~~~---~f~~-~~~wv~vs~~~~~~~~~~~i~~~~~-~~~--~--~~--~~- 234 (1151)
.+++|+|+.|+|||||.+.+..+.. +.. .|.. ...| +.+ .+.+..+. ... + .. +.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~--~~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIF--IDQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEE--EhH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 4899999999999999999864211 111 1101 1222 222 34445444 111 1 11 11
Q ss_pred HHHHHHHHHHhcCC--ceEEEEeCCCC-CChhhHHhhhccccCC-CCCcEEEEecCcccccc
Q 044085 235 NLLQLQLENQLKNK--KFLLVLDDMWT-ENYDDWTNLCKPFKAG-LPGSKIIVTTRNEDVSS 292 (1151)
Q Consensus 235 ~~~~~~l~~~l~~k--~~LlVlDdvw~-~~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 292 (1151)
+...-.+.+.+..+ +=++++|+--. -+....+.+...+... ..|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22223455555566 77888898733 2333334444333321 14667888888776543
No 335
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.054 Score=53.70 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999985
No 336
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.27 Score=55.18 Aligned_cols=89 Identities=11% Similarity=0.051 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhc-cCCCceEEEEeCCCCCHHHH--HHHHHHHhcCC-CCCcchHHHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEE-HFPDFRAWAYVSEDFDAVGI--TKVILQAAVGS-VDVNDLNLLQLQLEN 243 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~f~~~~~wv~vs~~~~~~~~--~~~i~~~~~~~-~~~~~~~~~~~~l~~ 243 (1151)
..++|.++|+.|+||||.+..++....... +-...+..+++ +++..... ++...+.++.+ ....+.+.+...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~-Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITI-DNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEec-cCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 457999999999999999999887443221 11123444444 34443332 33334434321 122344455444444
Q ss_pred HhcCCceEEEEeCCCC
Q 044085 244 QLKNKKFLLVLDDMWT 259 (1151)
Q Consensus 244 ~l~~k~~LlVlDdvw~ 259 (1151)
. .+.=++++|..-.
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 3456888898854
No 337
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.66 E-value=0.25 Score=50.67 Aligned_cols=209 Identities=13% Similarity=0.158 Sum_probs=117.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh----hhccCCCceEEEEeCCC-------
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR----VEEHFPDFRAWAYVSED------- 211 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~----~~~~f~~~~~wv~vs~~------- 211 (1151)
.+.++++....+...... ++.+-+.++|+.|.||-|.+..+.+..- .+-+- +.+.|.+-|..
T Consensus 14 ~l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki-~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI-ETRTFTTPSKKKLEISTV 86 (351)
T ss_pred hcccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee-eeEEEecCCCceEEEEEe
Confidence 366777777777776642 2467889999999999998776655321 11122 44556554433
Q ss_pred --------------CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCce-EEEEeCCCCCChhhHHhhhccccCCC
Q 044085 212 --------------FDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKF-LLVLDDMWTENYDDWTNLCKPFKAGL 276 (1151)
Q Consensus 212 --------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~ 276 (1151)
...+.+.++++.+.......+ .-..+.| ++|+-.+.+-..+...++..-...-.
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qie-----------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE-----------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcchh-----------hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 112334444444443111100 0012344 56666665544556666666655555
Q ss_pred CCcEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh-hHHHHHHH
Q 044085 277 PGSKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP-LAAKTLGG 354 (1151)
Q Consensus 277 ~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~ 354 (1151)
..+|+|+...+ ..+-.......-.+.+...+++|....+++-+-...- . -| .+++.+|+++++|.- .|+-++-.
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~-lp--~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-Q-LP--KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-c-Cc--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 67787765443 2232233333336889999999999888776533221 2 22 589999999999864 44444322
Q ss_pred HhcCC---------CCHHHHHHHHhhhc
Q 044085 355 LLRGK---------YDPKDWEDVLNSKI 373 (1151)
Q Consensus 355 ~L~~~---------~~~~~w~~~~~~~~ 373 (1151)
.-..+ ...-+|+-+..+..
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHH
Confidence 21111 12467888776543
No 338
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.63 E-value=0.1 Score=61.90 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=75.5
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHH
Q 044085 140 DEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 140 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
....++|+...++++.+.+..-.. .-.-|.|+|..|+|||++|+.+++.... .- ...+.|++..-.+ ..+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~-~p~v~v~c~~~~~--~~~e 255 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPR--AD-KPLVYLNCAALPE--SLAE 255 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCc--CC-CCeEEEEcccCCh--HHHH
Confidence 345799999999998888876542 2235789999999999999999984321 11 2334455554321 2211
Q ss_pred -HHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCc
Q 044085 220 -VILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTRN 287 (1151)
Q Consensus 220 -~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 287 (1151)
++............ ......+ -....=.|+||+|..-.......+...+..+. ...|||.||..
T Consensus 256 ~~lfG~~~g~~~ga~-~~~~g~~---~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 SELFGHVKGAFTGAI-SNRSGKF---ELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred HHhcCccccccCCCc-ccCCcch---hhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 11111000000000 0000011 11223457899997766666777766654432 24588888864
No 339
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.62 E-value=0.29 Score=48.31 Aligned_cols=114 Identities=15% Similarity=0.086 Sum_probs=59.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEE-------EeCCCCCH--HHHHHHHHHHhcCCCCCcchHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWA-------YVSEDFDA--VGITKVILQAAVGSVDVNDLNLLQLQ 240 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv-------~vs~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~ 240 (1151)
.+++|+|..|.|||||++.+..-... . ...+++ .+.+.... ..+...+... .......-+...-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~---~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~--~~~~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPW---G-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP--WDDVLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC---C-CceEEECCCceEEEECCCCccccccHHHHhhcc--CCCCCCHHHHHHHH
Confidence 48999999999999999999874321 1 111111 22333211 1122222110 11112222333345
Q ss_pred HHHHhcCCceEEEEeCCCC-CChhhHHhhhccccCCCCCcEEEEecCccccc
Q 044085 241 LENQLKNKKFLLVLDDMWT-ENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVS 291 (1151)
Q Consensus 241 l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 291 (1151)
+.+.+..++=++++|+--. -|......+...+... +..||++|.+....
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 5666667788889998632 1233333444433332 35677777776554
No 340
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.037 Score=51.79 Aligned_cols=42 Identities=31% Similarity=0.422 Sum_probs=31.3
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
+|.|.|++|+||||+|+.+.++.... | + +.-.++++|++..+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~--------v----saG~iFR~~A~e~g 43 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L--------V----SAGTIFREMARERG 43 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e--------e----eccHHHHHHHHHcC
Confidence 68999999999999999999854321 2 1 23357788887765
No 341
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.58 E-value=0.29 Score=49.16 Aligned_cols=117 Identities=13% Similarity=0.182 Sum_probs=62.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEE---eCCCCCHHHHHHH------HHHHhc-CC-----CC-Ccc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAY---VSEDFDAVGITKV------ILQAAV-GS-----VD-VND 233 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~---vs~~~~~~~~~~~------i~~~~~-~~-----~~-~~~ 233 (1151)
.+++|+|..|.|||||++.++.... .. ...+++. +. ..+....... +++.++ .. .. ...
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~---~~-~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK---PS-SGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CC-CcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4899999999999999999988432 22 3333332 21 1222222211 233333 10 01 111
Q ss_pred hHHHHHHHHHHhcCCceEEEEeCCCC-CChhhHHhhhccccCCC-C-CcEEEEecCccccc
Q 044085 234 LNLLQLQLENQLKNKKFLLVLDDMWT-ENYDDWTNLCKPFKAGL-P-GSKIIVTTRNEDVS 291 (1151)
Q Consensus 234 ~~~~~~~l~~~l~~k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~-~-gs~iivTtr~~~v~ 291 (1151)
-+...-.+-+.+...+-++++|+--. -|....+.+...+..-. . |.-||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 12223345666777889999998742 23334444444443321 2 56788888765543
No 342
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.58 E-value=0.064 Score=66.18 Aligned_cols=185 Identities=12% Similarity=0.094 Sum_probs=85.8
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC----CCCcchHHHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS----VDVNDLNLLQLQLENQ 244 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~ 244 (1151)
..++.|+|+.|.||||+.+.+....-. .+- -.+|.+..... ...+..+...++.. ........-...+...
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~-aq~---G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALM-FQS---GIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHH-HHh---CCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 468999999999999999998764111 110 01111111000 00011111001000 0001111111122223
Q ss_pred hc--CCceEEEEeCCCCC-ChhhHHhhh----ccccCCCCCcEEEEecCcccccccccCCCceeecC-CCChhhhHHHHH
Q 044085 245 LK--NKKFLLVLDDMWTE-NYDDWTNLC----KPFKAGLPGSKIIVTTRNEDVSSMVTTPSAAYSLE-NLLRDDCLSIFV 316 (1151)
Q Consensus 245 l~--~k~~LlVlDdvw~~-~~~~~~~l~----~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~-~L~~~~~~~lf~ 316 (1151)
+. .++-|+++|..-.. +..+...+. ..+. ..|+.+|+||....+.........+.... .++. +... |.
T Consensus 397 l~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~-~~l~-p~ 472 (771)
T TIGR01069 397 LSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDE-ETLS-PT 472 (771)
T ss_pred HHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcC-CCCc-eE
Confidence 32 47899999998542 333333332 2222 25789999999887654332221111110 0111 1110 00
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHh
Q 044085 317 RHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLN 370 (1151)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~ 370 (1151)
.+.. .+.+. ...|-+|++++ |+|-.+.--|..+... ...++.+++.
T Consensus 473 Ykl~-~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 473 YKLL-KGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred EEEC-CCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 0110 01101 24577788777 7998888888888654 3334444443
No 343
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.57 E-value=0.03 Score=57.88 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+..+|+|+|.+|+||||||+.++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999984
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.56 E-value=0.19 Score=49.93 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=55.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEE------eCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAY------VSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLEN 243 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~------vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~ 243 (1151)
.+++|+|..|.|||||++.+..-.. .. ...+++. +.+... ...-+...-.+.+
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~---p~-~G~i~~~g~~i~~~~q~~~-----------------LSgGq~qrv~lar 84 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLI---PN-GDNDEWDGITPVYKPQYID-----------------LSGGELQRVAIAA 84 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC---CC-CcEEEECCEEEEEEcccCC-----------------CCHHHHHHHHHHH
Confidence 4899999999999999999987332 11 2222221 111111 1111222334556
Q ss_pred HhcCCceEEEEeCCCCC-ChhhHHhhhccccCC--CCCcEEEEecCcccccc
Q 044085 244 QLKNKKFLLVLDDMWTE-NYDDWTNLCKPFKAG--LPGSKIIVTTRNEDVSS 292 (1151)
Q Consensus 244 ~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~ 292 (1151)
.+..++-++++|+--.. |......+...+... ..+.-||++|.+.....
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 66677889999987432 233333333333221 12255777776654433
No 345
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.56 E-value=0.097 Score=62.81 Aligned_cols=132 Identities=14% Similarity=0.083 Sum_probs=73.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
...++|....+.++++.+..... .-.-|.|+|..|+|||++|+.+++...-.. ...+.|++..-. ...+..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~---~pfv~i~c~~~~--~~~~~~ 265 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAALS--ETLLES 265 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhCCCCC---CCeEEeecCCCC--HHHHHH
Confidence 45789999999999888765432 223467999999999999999998432111 122344444321 122221
Q ss_pred HHHHhcCCC-C--CcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecC
Q 044085 221 ILQAAVGSV-D--VNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTR 286 (1151)
Q Consensus 221 i~~~~~~~~-~--~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 286 (1151)
.+.+.. . ...... ..........-.|+||+|..-....+..+...+..+. ...|||.||.
T Consensus 266 ---~lfg~~~~~~~~~~~~---~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~ 339 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIAQ---RKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATN 339 (534)
T ss_pred ---HHcCCCCCccCCCCcC---CCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCC
Confidence 111100 0 000000 0000112234568999997766666777766654432 1258888875
Q ss_pred c
Q 044085 287 N 287 (1151)
Q Consensus 287 ~ 287 (1151)
.
T Consensus 340 ~ 340 (534)
T TIGR01817 340 R 340 (534)
T ss_pred C
Confidence 3
No 346
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.56 E-value=0.17 Score=53.81 Aligned_cols=126 Identities=18% Similarity=0.120 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc--CC
Q 044085 151 KEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV--GS 228 (1151)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~--~~ 228 (1151)
.+.+...+... ++..-++|+|..|.|||||.+.+..... .. ...+++.- +.....+-.+++..... .+
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~--~~--~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS--TG--ISQLGLRG-KKVGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC--CC--CceEEECC-EEeecchhHHHHHHHhccccc
Confidence 34444555432 2356789999999999999999998432 21 22333310 11101111123332221 11
Q ss_pred C------CC-cchHHHHHHHHHHhc-CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcccccc
Q 044085 229 V------DV-NDLNLLQLQLENQLK-NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSS 292 (1151)
Q Consensus 229 ~------~~-~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~ 292 (1151)
. +. +.... ...+...+. ..+=++++|.+- ..+.+..+...+. .|..||+||....+..
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIG--REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 1 11 11111 222333333 578899999984 3455666655543 4778999998766543
No 347
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.54 E-value=0.043 Score=59.21 Aligned_cols=51 Identities=31% Similarity=0.431 Sum_probs=45.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhh
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...++|.++.++++++.+.......+..-+|+.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999877665556778999999999999999999988
No 348
>PRK05439 pantothenate kinase; Provisional
Probab=94.53 E-value=0.22 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhh
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+..-+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4668999999999999999999887
No 349
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.53 E-value=0.14 Score=53.13 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 350
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.52 E-value=0.29 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|.++|..|+||||+|..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999988763
No 351
>PRK08233 hypothetical protein; Provisional
Probab=94.51 E-value=0.03 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999874
No 352
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.49 E-value=0.11 Score=53.12 Aligned_cols=83 Identities=23% Similarity=0.323 Sum_probs=50.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC-CHHHHHHHHHHHhc--------CCCCCcchHH----
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF-DAVGITKVILQAAV--------GSVDVNDLNL---- 236 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~-~~~~~~~~i~~~~~--------~~~~~~~~~~---- 236 (1151)
.-++|.|.+|+|||+|++.+.++.. . +..+++.+.+.. +..++.+++...-. ...+......
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~--~---d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD--A---DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT--T---TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc--c---cceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 3689999999999999999998542 1 556888887653 34555555543311 1111111111
Q ss_pred -HHHHHHHHh--cCCceEEEEeCC
Q 044085 237 -LQLQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 237 -~~~~l~~~l--~~k~~LlVlDdv 257 (1151)
..-.+.+++ +++..|+++||+
T Consensus 91 ~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETH
T ss_pred ccchhhhHHHhhcCCceeehhhhh
Confidence 111222333 689999999999
No 353
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.45 E-value=0.12 Score=51.65 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.3
Q ss_pred eEEEEEecCCCccHHHHHHHHhhch
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..+|+|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999999843
No 354
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.41 E-value=0.035 Score=57.29 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|+|+|+.|+||||||+.++..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 355
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.36 E-value=0.76 Score=49.12 Aligned_cols=133 Identities=13% Similarity=0.087 Sum_probs=75.1
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh-----------hccCCCceEEEEeCCCCCHHHHH
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV-----------EEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-----------~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
.-+++...+..+. -.....++|+.|+||+++|..+....-- ....||. .|+.-....
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~-~~i~p~~~~------ 72 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDI-HEFSPQGKG------ 72 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCE-EEEecCCCC------
Confidence 3455666665543 3457779999999999999888763210 0112221 122111100
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSS 292 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~ 292 (1151)
..-..++. +.+.+.+ .+++=++|+|++...+...+..+...+..-.+++.+|++|.+ ..+..
T Consensus 73 -----------~~I~idqi-R~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 73 -----------RLHSIETP-RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred -----------CcCcHHHH-HHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 00112221 2222332 245568899999888888899988888776666665555554 55554
Q ss_pred cccCCCceeecCCC
Q 044085 293 MVTTPSAAYSLENL 306 (1151)
Q Consensus 293 ~~~~~~~~~~l~~L 306 (1151)
...+..+.+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 44433346777655
No 356
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.35 E-value=0.21 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhh
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999988765
No 357
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.34 E-value=0.3 Score=53.88 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=41.3
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhcc---CCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEH---FPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
.-.++-|+|.+|+|||++|..++-....... -...++|++....|+++++. +|++.+.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 4568889999999999999988754322111 11368999999999988764 4455443
No 358
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=0.31 Score=54.62 Aligned_cols=53 Identities=26% Similarity=0.367 Sum_probs=38.9
Q ss_pred Cccccchh---hHHHHHHHHhcCCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchh
Q 044085 142 DEVYGREK---DKEALVGLLRRDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVR 194 (1151)
Q Consensus 142 ~~~vgr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 194 (1151)
.++-|-|+ |+++|+++|.+... -++.=++-|.++|++|.|||-||++|+-...
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC
Confidence 45667765 66788888876532 0233456788999999999999999998543
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.31 E-value=0.14 Score=56.77 Aligned_cols=86 Identities=22% Similarity=0.234 Sum_probs=46.4
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCC-CceEEEEeCCCCC--HHHHHHHHHHHhcCC-CCCcchHHHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFP-DFRAWAYVSEDFD--AVGITKVILQAAVGS-VDVNDLNLLQLQLENQ 244 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~-~~~~wv~vs~~~~--~~~~~~~i~~~~~~~-~~~~~~~~~~~~l~~~ 244 (1151)
-.++.++|+.|+||||++.++..... ..+. ..+..++ .+.+. ..+-++...+.++.. ....+..++...+. .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~--~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~ 212 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV--MRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-E 212 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--HhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-H
Confidence 35899999999999999999988432 2331 2344444 33332 233334444444411 11222223333333 3
Q ss_pred hcCCceEEEEeCCCC
Q 044085 245 LKNKKFLLVLDDMWT 259 (1151)
Q Consensus 245 l~~k~~LlVlDdvw~ 259 (1151)
+.++ =++++|..-.
T Consensus 213 l~~~-DlVLIDTaG~ 226 (374)
T PRK14722 213 LRNK-HMVLIDTIGM 226 (374)
T ss_pred hcCC-CEEEEcCCCC
Confidence 4444 5566898843
No 360
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.29 E-value=0.05 Score=56.23 Aligned_cols=22 Identities=32% Similarity=0.316 Sum_probs=20.1
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
++++|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999864
No 361
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.28 E-value=0.96 Score=50.16 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=43.6
Q ss_pred hHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHH--HHHHHHHH
Q 044085 150 DKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVG--ITKVILQA 224 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~--~~~~i~~~ 224 (1151)
-.++|+++|.....+ ....+.||-.+|.-|.||||-|-.+++..+ . . ...+-+...+.+.+.. -++.+.++
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lk--k-~-~~kvllVaaD~~RpAA~eQL~~La~q 153 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLK--K-K-GKKVLLVAADTYRPAAIEQLKQLAEQ 153 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHH--H-c-CCceEEEecccCChHHHHHHHHHHHH
Confidence 456777877752221 124578999999999999999998888433 3 3 3334343344443322 23444444
Q ss_pred hc
Q 044085 225 AV 226 (1151)
Q Consensus 225 ~~ 226 (1151)
+.
T Consensus 154 ~~ 155 (451)
T COG0541 154 VG 155 (451)
T ss_pred cC
Confidence 43
No 362
>PTZ00035 Rad51 protein; Provisional
Probab=94.27 E-value=0.27 Score=54.48 Aligned_cols=57 Identities=16% Similarity=0.065 Sum_probs=39.0
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhh---ccCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVE---EHFPDFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
.-.++.|+|..|+|||||+..++-..... ..-...++|++-...|+++++.+ +++..
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~-ia~~~ 176 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ-IAERF 176 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHH-HHHHh
Confidence 45799999999999999999887543311 11114567998888888777533 34443
No 363
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.27 E-value=0.36 Score=50.89 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=33.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
.-.++.|.|.+|+|||++|.++.... . ..- ...+||+..+ ++.++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~g-e~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMG-EPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcC-CcEEEEEeeC--CHHHHHHH
Confidence 45799999999999999999876532 1 222 5688888765 44455544
No 364
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.26 E-value=0.24 Score=49.26 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=59.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC--CCCHHHHHHHHHHHhc--CCC-CC---------cc-h
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE--DFDAVGITKVILQAAV--GSV-DV---------ND-L 234 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~--~~~~~~~~~~i~~~~~--~~~-~~---------~~-~ 234 (1151)
.+++|+|..|.|||||.+.++.-.. .. ...+++.-.. ...... ....+. .+. .. -+ -
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~---~~-~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD---PT-SGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CC-CCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCHH
Confidence 4899999999999999999988422 22 2333321100 001111 111111 000 00 01 1
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHhhhccccCCCCCcEEEEecCccccccc
Q 044085 235 NLLQLQLENQLKNKKFLLVLDDMWTE-NYDDWTNLCKPFKAGLPGSKIIVTTRNEDVSSM 293 (1151)
Q Consensus 235 ~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~ 293 (1151)
+...-.+.+.+..++=++++|+-... |....+.+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 11222355566678889999987432 333334444444332235678888887665543
No 365
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.22 E-value=0.046 Score=49.72 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=18.4
Q ss_pred EEEecCCCccHHHHHHHHhhchhhhccC
Q 044085 172 IPITGMGGLGKTTLAQLVFNDVRVEEHF 199 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~~~~~~f 199 (1151)
|.|+|.+|+||||+|+.++. .....|
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f 27 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSF 27 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--E
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCce
Confidence 57999999999999999999 555667
No 366
>PRK06547 hypothetical protein; Provisional
Probab=94.21 E-value=0.043 Score=54.19 Aligned_cols=25 Identities=40% Similarity=0.519 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999874
No 367
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.18 E-value=0.037 Score=53.25 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.4
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 368
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.18 E-value=0.23 Score=51.58 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.2
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.|.|+|++|+||||+|+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 369
>PRK06762 hypothetical protein; Provisional
Probab=94.16 E-value=0.039 Score=54.66 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.5
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|.|+|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 370
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.14 E-value=0.24 Score=57.00 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.3
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|+|+|++|+||||++..+...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999988873
No 371
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.11 E-value=0.16 Score=49.06 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999884
No 372
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.11 E-value=0.047 Score=53.83 Aligned_cols=40 Identities=28% Similarity=0.163 Sum_probs=27.3
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE 210 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~ 210 (1151)
..++.+.|+.|+|||.+|+.+..-..+ +.. ...+-+..+.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~-~~~~~~d~s~ 42 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSE-RPLIRIDMSE 42 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSC-CEEEEEEGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCc-cchHHHhhhc
Confidence 457889999999999999999983321 222 3344444443
No 373
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=1.4 Score=52.02 Aligned_cols=98 Identities=19% Similarity=0.168 Sum_probs=62.3
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
+++=|.++-+.+|.+-+.-.-.. +-.+..=|..+|++|.|||-+|++|+. + | ...|++|-++
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVAT--E----c--sL~FlSVKGP---- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVAT--E----C--SLNFLSVKGP---- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHh--h----c--eeeEEeecCH----
Confidence 46778898888888866431110 112345678999999999999999998 3 2 2345777654
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCC
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWT 259 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~ 259 (1151)
+++..-+ .++.+...+...+.=..++++|.+|.+.+
T Consensus 740 ELLNMYV--------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ELLNMYV--------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHHh--------cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 2222222 12334444444444457899999999854
No 374
>PRK06217 hypothetical protein; Validated
Probab=94.08 E-value=0.16 Score=51.16 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEecCCCccHHHHHHHHhhch
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.|.|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999854
No 375
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.02 E-value=0.43 Score=51.21 Aligned_cols=135 Identities=18% Similarity=0.202 Sum_probs=69.4
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhch-hhhccCCCceE-E---EEeCCCC-----CHH
Q 044085 146 GREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV-RVEEHFPDFRA-W---AYVSEDF-----DAV 215 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~f~~~~~-w---v~vs~~~-----~~~ 215 (1151)
+|..+..--.++|+++ +...|.+.|.+|.|||.||-++.-.. ..++.| +.++ . +.+.++. +.+
T Consensus 228 prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y-~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 228 PRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY-RKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred cccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh-ceEEEecCCcCcccccCcCCCchh
Confidence 4555555566677665 46799999999999999997664322 234455 3222 1 1122211 111
Q ss_pred H----HHHHHHHHhc--CCCCCcchHHHHHHH---------HHHhcCC---ceEEEEeCCCCCChhhHHhhhccccCCCC
Q 044085 216 G----ITKVILQAAV--GSVDVNDLNLLQLQL---------ENQLKNK---KFLLVLDDMWTENYDDWTNLCKPFKAGLP 277 (1151)
Q Consensus 216 ~----~~~~i~~~~~--~~~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdvw~~~~~~~~~l~~~l~~~~~ 277 (1151)
+ ..+.|..-+. ...+......+...+ -.+++++ +-+||+|...+-...+...+. -.-++
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTil---tR~G~ 377 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTIL---TRAGE 377 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHH---HhccC
Confidence 1 1222222222 011111111111111 1223443 468999999765555544444 33457
Q ss_pred CcEEEEecCcccc
Q 044085 278 GSKIIVTTRNEDV 290 (1151)
Q Consensus 278 gs~iivTtr~~~v 290 (1151)
||||+.|--..++
T Consensus 378 GsKIVl~gd~aQi 390 (436)
T COG1875 378 GSKIVLTGDPAQI 390 (436)
T ss_pred CCEEEEcCCHHHc
Confidence 9999998764433
No 376
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.99 E-value=0.1 Score=53.76 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=37.4
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
+..++++.+.... .+..+|+|.|++|+|||||...+......+++= -.++=|.-|.+++--.++
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~-VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKR-VAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT---EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCc-eEEEEECCCCCCCCCccc
Confidence 4456666665543 245799999999999999999998855433221 233444455666544443
No 377
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.98 E-value=0.2 Score=51.03 Aligned_cols=41 Identities=27% Similarity=0.344 Sum_probs=27.9
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccC-------CCceEEEEeCCC
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHF-------PDFRAWAYVSED 211 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-------~~~~~wv~vs~~ 211 (1151)
++.|+|++|+||||++..+.........| +..+.|+.....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 78899999999999999988865433222 236778776655
No 378
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.97 E-value=0.23 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++++|+|+.|.|||||.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 69999999999999999999763
No 379
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.90 E-value=0.67 Score=51.09 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=50.7
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH--HHHHHHHHHHhcCC-CCCcchHHHHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA--VGITKVILQAAVGS-VDVNDLNLLQLQLENQ 244 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~--~~~~~~i~~~~~~~-~~~~~~~~~~~~l~~~ 244 (1151)
..+++.|+|+.|+||||++..++.... ..- ..+.+|+.. ++.. .+-++...+.+..+ ....+.+++...+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~g-~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQN-RTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcC-CeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 457999999999999999999987432 222 345566553 3332 33334444433311 1234555555555433
Q ss_pred hc-CCceEEEEeCCCC
Q 044085 245 LK-NKKFLLVLDDMWT 259 (1151)
Q Consensus 245 l~-~k~~LlVlDdvw~ 259 (1151)
-. +..=+|++|-.-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 21 3456788887744
No 380
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.87 E-value=0.13 Score=57.13 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=48.8
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCce--EEEEeCC-
Q 044085 142 DEVYGREKDKEALVGLLRRD--------DLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFR--AWAYVSE- 210 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~--~wv~vs~- 210 (1151)
..++|.++.++.+.-.+... ........+-|.++|++|+|||++|+.+.... ...|-... .+...+-
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l--~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA--NAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh--CCeEEEeecceeecCCcc
Confidence 46889999888886655532 00011134678899999999999999999843 33331211 1211111
Q ss_pred CCCHHHHHHHHHHHh
Q 044085 211 DFDAVGITKVILQAA 225 (1151)
Q Consensus 211 ~~~~~~~~~~i~~~~ 225 (1151)
..+.+.+++.+....
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665544
No 381
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=93.85 E-value=0.18 Score=56.49 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.0
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999865
No 382
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.19 Score=52.71 Aligned_cols=79 Identities=10% Similarity=0.236 Sum_probs=44.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhh--ccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVE--EHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (1151)
-++|.++|++|.|||+|.++.++...++ +.| .....+.+.. ..++.....+ ...-...+.+++.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y-~~~~liEins----hsLFSKWFsE-----SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY-YKGQLIEINS----HSLFSKWFSE-----SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCcc-ccceEEEEeh----hHHHHHHHhh-----hhhHHHHHHHHHHHHHh
Confidence 4799999999999999999999966443 445 2223333321 1222221111 11223334455666666
Q ss_pred CCc--eEEEEeCC
Q 044085 247 NKK--FLLVLDDM 257 (1151)
Q Consensus 247 ~k~--~LlVlDdv 257 (1151)
++. +++.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 554 34457877
No 383
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.82 E-value=0.19 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+..+|.|+|.+|+|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999984
No 384
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.81 E-value=0.13 Score=55.57 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=50.7
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcchHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS------VDVNDLNLLQLQL 241 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l 241 (1151)
.-+++-|+|+.|+||||||.++.... ...- ..++||.....+++.-. +.++.+ ...+..++.....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~--q~~g-~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA--QKQG-GICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh--hccc-ceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 44699999999999999999998843 3333 67899999887766433 233211 0123345555556
Q ss_pred HHHhcC-CceEEEEeCCC
Q 044085 242 ENQLKN-KKFLLVLDDMW 258 (1151)
Q Consensus 242 ~~~l~~-k~~LlVlDdvw 258 (1151)
...++. .--++|+|.|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 666653 44688999984
No 385
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.81 E-value=0.17 Score=53.93 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=18.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
+.|.|.|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 368899999999999999999843
No 386
>PRK03839 putative kinase; Provisional
Probab=93.80 E-value=0.046 Score=54.96 Aligned_cols=22 Identities=45% Similarity=0.770 Sum_probs=20.2
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 387
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.80 E-value=0.036 Score=53.95 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.7
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|-+.|.+|+||||+|+++..-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHH
Confidence 5778999999999999999883
No 388
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.79 E-value=0.089 Score=48.85 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchh
Q 044085 149 KDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVR 194 (1151)
Q Consensus 149 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 194 (1151)
++.+++-+.|...- ..-.+|.+.|.-|.||||+++.++....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34455555554321 1224899999999999999999998543
No 389
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.78 E-value=0.15 Score=57.06 Aligned_cols=40 Identities=30% Similarity=0.193 Sum_probs=29.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE 210 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~ 210 (1151)
.-.++.|.|.+|+|||||+.+++.... ..- ..++|++..+
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a--~~g-~~VlYvs~EE 120 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA--KRG-GKVLYVSGEE 120 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--hcC-CeEEEEECCc
Confidence 346899999999999999999987432 332 4567776543
No 390
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=0.39 Score=47.80 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=60.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc---CCC---CC--------cchH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV---GSV---DV--------NDLN 235 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~---~~~---~~--------~~~~ 235 (1151)
.+++|+|..|.|||||++.++.... .. ...+++.-....+.. ..+...+. ... .. -+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~-~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PD-SGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CC-CeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 4899999999999999999987432 12 333333211000000 11111111 000 00 0111
Q ss_pred -HHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHhhhccccCC-CCCcEEEEecCcccccc
Q 044085 236 -LLQLQLENQLKNKKFLLVLDDMWTE-NYDDWTNLCKPFKAG-LPGSKIIVTTRNEDVSS 292 (1151)
Q Consensus 236 -~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 292 (1151)
...-.+.+.+..++=++++|+--.. |....+.+...+... ..|.-||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 1223456667788899999997432 233334444444332 23667888888765444
No 391
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.72 E-value=0.28 Score=55.90 Aligned_cols=86 Identities=22% Similarity=0.374 Sum_probs=53.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC-CHHHHHHHHHHHhc--------CCCCCcchH-----
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF-DAVGITKVILQAAV--------GSVDVNDLN----- 235 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~-~~~~~~~~i~~~~~--------~~~~~~~~~----- 235 (1151)
.-++|.|..|+|||||+.++..+.. ...++.++++-+.+.. .+.++.+++...-. ...+.....
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~--~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999877433 2223567788787654 34555555554321 011111111
Q ss_pred HHHHHHHHHh---cCCceEEEEeCC
Q 044085 236 LLQLQLENQL---KNKKFLLVLDDM 257 (1151)
Q Consensus 236 ~~~~~l~~~l---~~k~~LlVlDdv 257 (1151)
.....+.+++ +++.+|+++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1223355555 679999999999
No 392
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.72 E-value=0.28 Score=50.91 Aligned_cols=143 Identities=14% Similarity=0.075 Sum_probs=78.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC-----CCCHHHHHHHHHHHhcCC-------CCCcchHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE-----DFDAVGITKVILQAAVGS-------VDVNDLNLL 237 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~-----~~~~~~~~~~i~~~~~~~-------~~~~~~~~~ 237 (1151)
.+++|||..|.||||+|+.+..=. ... ...++..-.+ .....+-..++++.++.. ...-+-.++
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~--~pt--~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLE--EPT--SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCc--CCC--CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 489999999999999999998732 222 2333332111 112333445555555411 111122233
Q ss_pred H-HHHHHHhcCCceEEEEeCCCCC-ChhhHHhhhccccCC--CCCcEEEEecCcccccccccCCCceeecC-CCChhhhH
Q 044085 238 Q-LQLENQLKNKKFLLVLDDMWTE-NYDDWTNLCKPFKAG--LPGSKIIVTTRNEDVSSMVTTPSAAYSLE-NLLRDDCL 312 (1151)
Q Consensus 238 ~-~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~--~~gs~iivTtr~~~v~~~~~~~~~~~~l~-~L~~~~~~ 312 (1151)
+ -.+.+.|.-++=++|.|.--+. |...-.++...+.+- ..|-..+..|.+-.|+..+...-.+..+. -.+.....
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~ 195 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTE 195 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHH
Confidence 3 3467778889999999987432 112223333333321 24667888888888877765432222232 33344445
Q ss_pred HHHH
Q 044085 313 SIFV 316 (1151)
Q Consensus 313 ~lf~ 316 (1151)
++|.
T Consensus 196 ~~~~ 199 (268)
T COG4608 196 EVFS 199 (268)
T ss_pred HHhh
Confidence 5553
No 393
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.71 E-value=0.058 Score=50.76 Aligned_cols=23 Identities=39% Similarity=0.663 Sum_probs=21.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.++++|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988877
No 394
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.70 E-value=0.096 Score=47.55 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC-CCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-SGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++|.+-..+.+++.+...-.+ ...++-|++.+|..|+|||-+|+.++++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 35677766665555555432211 2356789999999999999999988886
No 395
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.69 E-value=0.15 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEecCCCccHHHHHHHHhhch
Q 044085 172 IPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
|.++|++|+||||+|+.+....
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998743
No 396
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.68 E-value=0.15 Score=54.14 Aligned_cols=55 Identities=27% Similarity=0.424 Sum_probs=41.5
Q ss_pred CCccccchhhHH---HHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccC
Q 044085 141 EDEVYGREKDKE---ALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF 199 (1151)
Q Consensus 141 ~~~~vgr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 199 (1151)
.+.+||..+.++ -+++++.+... .-+.|.|+|++|.|||+||-.+.+.....-.|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~----aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKM----AGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcc----cccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 357899887766 47788877653 45789999999999999999999944333334
No 397
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.68 E-value=0.1 Score=48.12 Aligned_cols=69 Identities=19% Similarity=0.154 Sum_probs=40.5
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
.+-|.|.|-+|+||||+|.+++. . . ..-|+++|+-.....+....-++. ....-+.+.+.+.|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae--~--~----~~~~i~isd~vkEn~l~~gyDE~y--~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAE--K--T----GLEYIEISDLVKENNLYEGYDEEY--KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHH--H--h----CCceEehhhHHhhhcchhcccccc--cCccccHHHHHHHHHHHHhc
Confidence 34688999999999999999996 2 1 234677775433333222211111 12234555566666665554
No 398
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.66 E-value=0.57 Score=48.99 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=31.2
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
-.++.|.|..|+||||+|.+++... .+.. ...++++.. -+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g--~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG--YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC--CcEEEEeCC--CCHHHHHHHH
Confidence 3589999999999999987665532 1222 345666633 3455555555
No 399
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.65 E-value=0.2 Score=57.57 Aligned_cols=86 Identities=19% Similarity=0.252 Sum_probs=47.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEE-EEeCCCCCH-HHHHHHHHHHhc-CCCCCcchH-----HHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAW-AYVSEDFDA-VGITKVILQAAV-GSVDVNDLN-----LLQLQL 241 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~w-v~vs~~~~~-~~~~~~i~~~~~-~~~~~~~~~-----~~~~~l 241 (1151)
.-..|+|.+|+|||||++.+.+. +....+++.++ +-|.+.... .++.+.+-.++. ...+..... .+.-.+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~--i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~ 494 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANA--ITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIER 494 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHH--HhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999983 33333355444 445544332 222222211111 211211111 122233
Q ss_pred HHHh--cCCceEEEEeCC
Q 044085 242 ENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 242 ~~~l--~~k~~LlVlDdv 257 (1151)
.+++ .++.+||++|++
T Consensus 495 Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 495 AKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHcCCCEEEEEeCc
Confidence 4444 689999999999
No 400
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.62 E-value=0.0034 Score=61.84 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=78.5
Q ss_pred ccccC-ccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccc
Q 044085 568 ILQLP-NDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRI 646 (1151)
Q Consensus 568 i~~lp-~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i 646 (1151)
+.++| ..+......+.||++.|++..+-..++.++.|..||++.| .+..+|.++..+..++++++..|+ ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44566 5567778899999999999999889999999999999998 899999999999999999999888 78899999
Q ss_pred cCccCCCccCee
Q 044085 647 GKLTSLRTLAKF 658 (1151)
Q Consensus 647 ~~L~~L~~L~~~ 658 (1151)
++++.++.++.-
T Consensus 108 ~k~~~~k~~e~k 119 (326)
T KOG0473|consen 108 KKEPHPKKNEQK 119 (326)
T ss_pred cccCCcchhhhc
Confidence 999999887643
No 401
>PRK04040 adenylate kinase; Provisional
Probab=93.62 E-value=0.055 Score=54.43 Aligned_cols=23 Identities=35% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999999883
No 402
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.61 E-value=0.043 Score=49.44 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEecCCCccHHHHHHHHhhch
Q 044085 172 IPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
|.|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988854
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.61 E-value=0.84 Score=50.10 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999998844
No 404
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.59 E-value=0.054 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+.++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999873
No 405
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.56 E-value=0.24 Score=49.35 Aligned_cols=115 Identities=21% Similarity=0.224 Sum_probs=58.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC--CCCHHHHHHHHHHHhc--CCC-C----------Ccch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE--DFDAVGITKVILQAAV--GSV-D----------VNDL 234 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~--~~~~~~~~~~i~~~~~--~~~-~----------~~~~ 234 (1151)
.+++|+|..|.|||||.+.++.-.. .. ...+++.-.. ....... ...+. .+. . ...-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~---~~-~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G 100 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLR---PT-SGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGG 100 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccC---CC-CCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHH
Confidence 4899999999999999999987322 12 2333321100 1111111 11221 110 0 0111
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCCCC-ChhhHHhhhccccCC-CCCcEEEEecCcccccc
Q 044085 235 NLLQLQLENQLKNKKFLLVLDDMWTE-NYDDWTNLCKPFKAG-LPGSKIIVTTRNEDVSS 292 (1151)
Q Consensus 235 ~~~~~~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~ 292 (1151)
+...-.+-+.+..++=++++|+--.. |......+...+... ..|..||++|.+.....
T Consensus 101 ~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 101 QRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11223455556677789999987432 233333343333321 23667888887765543
No 406
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.54 E-value=0.2 Score=59.47 Aligned_cols=133 Identities=15% Similarity=0.043 Sum_probs=71.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKV 220 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~ 220 (1151)
-+.++|....+.++++.+..... .-.-|.|+|..|+||+++|+.+.+... + .- ...+.++++.-. ...+..
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~-~pfv~inca~~~--~~~~e~ 273 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHLRSP-R-GK-KPFLALNCASIP--DDVVES 273 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHHhCC-C-CC-CCeEEeccccCC--HHHHHH
Confidence 34789999988888877754322 112377999999999999999866321 1 11 122445554432 222222
Q ss_pred HHHHhcCCCC---CcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecC
Q 044085 221 ILQAAVGSVD---VNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTR 286 (1151)
Q Consensus 221 i~~~~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 286 (1151)
. +.+... ....+.....+. ....=.++||+|..........+...+..+. ...|||.||.
T Consensus 274 e---lFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~ 347 (520)
T PRK10820 274 E---LFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQ 347 (520)
T ss_pred H---hcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecC
Confidence 1 111100 000000000011 1234457899998766666666766655431 1347888876
Q ss_pred cc
Q 044085 287 NE 288 (1151)
Q Consensus 287 ~~ 288 (1151)
..
T Consensus 348 ~~ 349 (520)
T PRK10820 348 KN 349 (520)
T ss_pred CC
Confidence 43
No 407
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.50 E-value=0.0065 Score=72.68 Aligned_cols=107 Identities=19% Similarity=0.187 Sum_probs=51.4
Q ss_pred CCCccEEEEeCC-ccccc---cCCCCCCCccEEEEcCC-CCcccCc----cccCCCCccceeeecCCCCCcc-CCCC-CC
Q 044085 940 LSHITTISMYGS-RLVSF---AEGGLPSNLCSLTLFGC-RYLTALP----NGIYNLSSLQHLEIRACPRIAS-IPEE-VG 1008 (1151)
Q Consensus 940 l~~L~~L~ls~n-~l~~~---~~~~~~~~L~~L~L~~n-~~~~~l~----~~l~~l~~L~~L~L~~~~~~~~-~~~~-~~ 1008 (1151)
++.|+.|.+... .++.. +.....+.|+.|++++| ......+ .....+++|+.|++++|...+. .-.. ..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666653 33321 11111246777777663 2211111 1223456666677766653221 1111 12
Q ss_pred CCCCccEEEecCCC-ccccccccCCCCCCCcceEEeccC
Q 044085 1009 FPPNITELHIEGPN-ICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 1009 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
.+++|+.|.+.+|. +++.........+++|++|++++|
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 25666666666666 554433333445566666666653
No 408
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.48 E-value=0.27 Score=46.13 Aligned_cols=82 Identities=13% Similarity=0.254 Sum_probs=33.4
Q ss_pred hhhcCCCCcccEEEecCccccccC-ccccCCCcccEEEcccccccccch-hhhcCCCCcEEecccccccccccc-ccccC
Q 044085 549 FHVIPRLRRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVLPE-SVSTLYNLQTLILERCYRLKKLFP-DIGNL 625 (1151)
Q Consensus 549 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~~~~L 625 (1151)
...|..++.|+.+.+.++ +..++ ..|.++..|+++.+.+ .+..++. .+..+++|+.+++..+ +..++. .+.+.
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~ 103 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC 103 (129)
T ss_dssp TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT-
T ss_pred hhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc--ccEEchhhhcCC
Confidence 344555555666665553 44444 3445555566666644 3333332 2445556666665432 223322 24444
Q ss_pred CccCeeecCC
Q 044085 626 TNLRHLKNSH 635 (1151)
Q Consensus 626 ~~L~~L~l~~ 635 (1151)
+|+.+.+..
T Consensus 104 -~l~~i~~~~ 112 (129)
T PF13306_consen 104 -NLKEINIPS 112 (129)
T ss_dssp -T--EEE-TT
T ss_pred -CceEEEECC
Confidence 555555443
No 409
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.41 E-value=0.28 Score=49.80 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|..|.|||||++.++.
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 410
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.35 E-value=0.12 Score=53.90 Aligned_cols=63 Identities=27% Similarity=0.222 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHH
Q 044085 152 EALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 152 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
.+++..+.... ++..+|+|.|.+|+|||||.-.+......+.+= -.++=|.-|.+++--.++-
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~r-VaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHR-VAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcE-EEEEEECCCCCCCCccccc
Confidence 34555554433 356799999999999999999988855433332 2344455566766544543
No 411
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.31 E-value=0.05 Score=30.13 Aligned_cols=14 Identities=36% Similarity=0.562 Sum_probs=4.7
Q ss_pred ccEEEccccccccc
Q 044085 581 LRYLEFSRTAIEVL 594 (1151)
Q Consensus 581 Lr~L~Ls~n~i~~l 594 (1151)
|+.|+|++|+++.+
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 412
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.31 E-value=0.082 Score=51.71 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4579999999999999999999974
No 413
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.27 E-value=0.48 Score=47.99 Aligned_cols=56 Identities=27% Similarity=0.250 Sum_probs=37.3
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccC
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF 199 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 199 (1151)
+++=|=.++++++.+...-.--. +-..++-|..+|++|.|||-+|++|+| +....|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceE
Confidence 34556677777777654322110 223456788999999999999999999 543444
No 414
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.26 E-value=0.056 Score=53.92 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999884
No 415
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.22 E-value=0.29 Score=51.01 Aligned_cols=114 Identities=15% Similarity=0.192 Sum_probs=65.4
Q ss_pred ccccchhhHHHHHHHHhcCCCC-CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLN-SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.++|..-.++.|+..+...-.+ ...++=|++.+|..|+||.-+|+.++++.....-=++. ++..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~---------------V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF---------------VHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh---------------HHHh
Confidence 4677777777777777654322 23567799999999999999999998854321111011 1111
Q ss_pred HHHhcCCCCCcch----HHHHHHHHHHhc-CCceEEEEeCCCCCChhhHHhhhccc
Q 044085 222 LQAAVGSVDVNDL----NLLQLQLENQLK-NKKFLLVLDDMWTENYDDWTNLCKPF 272 (1151)
Q Consensus 222 ~~~~~~~~~~~~~----~~~~~~l~~~l~-~k~~LlVlDdvw~~~~~~~~~l~~~l 272 (1151)
..... -...... +++...++..++ -+|-|+|+|+|......-.+.+...+
T Consensus 148 vat~h-FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfL 202 (344)
T KOG2170|consen 148 VATLH-FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFL 202 (344)
T ss_pred hhhcc-CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhh
Confidence 11111 0111122 233444444443 58999999999665444455554433
No 416
>PRK04328 hypothetical protein; Provisional
Probab=93.19 E-value=0.36 Score=51.27 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=30.7
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED 211 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~ 211 (1151)
.-.++.|.|.+|+|||+||.++.... . ..- ...+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~g-e~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMG-EPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcC-CcEEEEEeeCC
Confidence 45689999999999999999876642 2 222 56788887664
No 417
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.18 E-value=0.057 Score=55.30 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=20.0
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+|+|.|..|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 418
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.16 E-value=0.24 Score=55.38 Aligned_cols=110 Identities=13% Similarity=0.144 Sum_probs=62.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHhcCC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV-GSVDVNDLNLLQLQLENQLKNK 248 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~l~~k 248 (1151)
..|.|.|+.|+||||+.+.+.+. +.... ...++. +.++.... ... ...+. ......+.......++..++..
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~-~~~i~t-iEdp~E~~--~~~-~~~~i~q~evg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNA-AGHIIT-IEDPIEYV--HRN-KRSLINQREVGLDTLSFANALRAALRED 195 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCC-CCEEEE-EcCChhhh--ccC-ccceEEccccCCCCcCHHHHHHHhhccC
Confidence 48999999999999999998873 33333 344443 33332110 000 00000 0001111233556678888889
Q ss_pred ceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccccc
Q 044085 249 KFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVS 291 (1151)
Q Consensus 249 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 291 (1151)
+=.|++|.+.+ .+.+...... ...|..|+.|....++.
T Consensus 196 pd~i~vgEird--~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 196 PDVILIGEMRD--LETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred CCEEEEeCCCC--HHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 99999999953 4555443332 23455677777655443
No 419
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.09 E-value=0.065 Score=51.06 Aligned_cols=20 Identities=50% Similarity=0.776 Sum_probs=18.5
Q ss_pred EEEEecCCCccHHHHHHHHh
Q 044085 171 VIPITGMGGLGKTTLAQLVF 190 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~ 190 (1151)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 420
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.08 E-value=0.22 Score=55.56 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRD--------DLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++|.++.++.+..++... ........+.|.++|+.|+|||++|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999988887541 0000112367899999999999999999884
No 421
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.08 E-value=0.072 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998874
No 422
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.00 E-value=0.62 Score=49.28 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.8
Q ss_pred EEEEecCCCccHHHHHHHHhhch
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
+..|+|++|+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998743
No 423
>COG4240 Predicted kinase [General function prediction only]
Probab=92.99 E-value=0.6 Score=46.47 Aligned_cols=81 Identities=16% Similarity=0.079 Sum_probs=52.2
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc------CCCCCcchHHHHHH
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV------GSVDVNDLNLLQLQ 240 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~------~~~~~~~~~~~~~~ 240 (1151)
+++-+++|.|+-|+||||+|..+++... .......+..++.+-+-...-...++++.. +.....|..-....
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~--~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLA--AKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHH--HhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 3567999999999999999999999543 332134555555544433333444455532 22345677777777
Q ss_pred HHHHhcCCc
Q 044085 241 LENQLKNKK 249 (1151)
Q Consensus 241 l~~~l~~k~ 249 (1151)
|....+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 877777763
No 424
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.99 E-value=0.094 Score=52.42 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=20.3
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+|+|.|..|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 425
>PLN02348 phosphoribulokinase
Probab=92.94 E-value=0.33 Score=53.80 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+..-+|+|.|..|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999984
No 426
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.92 E-value=0.093 Score=54.45 Aligned_cols=174 Identities=13% Similarity=0.131 Sum_probs=80.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC----CCCcchHHHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS----VDVNDLNLLQLQLENQ 244 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~ 244 (1151)
.+++.|+|+.|.||||+.+.+....-. .+- . .+|.... ....+...++..++.. ........-...+...
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~~~l-a~~-g--~~vpa~~--~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~i 103 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVIVLM-AQI-G--CFVPCDS--ADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAI 103 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHH-HHh-C--CCcCccc--EEEeccceeEeeeccccchhcCcChHHHHHHHHHHH
Confidence 468999999999999999887653211 111 1 1111111 0011112222222200 0111222222233333
Q ss_pred h--cCCceEEEEeCCCCC----Ch--hhHHhhhccccCCCCCcEEEEecCcccccccccCCC--ceeecCCCChh--hhH
Q 044085 245 L--KNKKFLLVLDDMWTE----NY--DDWTNLCKPFKAGLPGSKIIVTTRNEDVSSMVTTPS--AAYSLENLLRD--DCL 312 (1151)
Q Consensus 245 l--~~k~~LlVlDdvw~~----~~--~~~~~l~~~l~~~~~gs~iivTtr~~~v~~~~~~~~--~~~~l~~L~~~--~~~ 312 (1151)
+ ..++-|+++|..... +. ..|..+ ..+.. ..|+.+|+||...++...+.... ...++.....+ +..
T Consensus 104 l~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~ 181 (222)
T cd03285 104 LKSATENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTL 181 (222)
T ss_pred HHhCCCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcE
Confidence 4 357889999998321 11 122211 22222 24778999998766655433211 01222211111 111
Q ss_pred HHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcC
Q 044085 313 SIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRG 358 (1151)
Q Consensus 313 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~ 358 (1151)
.|..+.. ... .. ...|-++++++ |+|-.+.-.|..+..
T Consensus 182 -~~~Y~l~-~G~--~~---~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 182 -TMLYKVE-KGA--CD---QSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred -eEEEEEe-eCC--CC---CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 1111111 111 01 24577777766 899888888776654
No 427
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.90 E-value=0.13 Score=50.01 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..+.|.|+.|+|||||+++++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 578999999999999999999843
No 428
>PRK15453 phosphoribulokinase; Provisional
Probab=92.83 E-value=0.62 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 429
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.83 E-value=0.27 Score=51.54 Aligned_cols=85 Identities=24% Similarity=0.234 Sum_probs=50.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc--------C--------CCC-
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV--------G--------SVD- 230 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~--------~--------~~~- 230 (1151)
.-.++.|.|.+|+|||++|.++...... .+...++||+..++ ..++.+.+- .++ . ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~--~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLK--NFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--HHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhh--hcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4468999999999999999987653322 21156788887654 344443332 211 0 000
Q ss_pred ----CcchHHHHHHHHHHhcC-CceEEEEeCC
Q 044085 231 ----VNDLNLLQLQLENQLKN-KKFLLVLDDM 257 (1151)
Q Consensus 231 ----~~~~~~~~~~l~~~l~~-k~~LlVlDdv 257 (1151)
..+.+.+...+.+.++. +.-.+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24566666777766653 4578888876
No 430
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.82 E-value=0.41 Score=54.73 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=53.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC-CHHHHHHHHHHHhc--------CCCCCcchH-----
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF-DAVGITKVILQAAV--------GSVDVNDLN----- 235 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~-~~~~~~~~i~~~~~--------~~~~~~~~~----- 235 (1151)
.-++|.|.+|+|||||+.++.++... +..+..+++-+.+.. ...++..++...-. ...+.....
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~--~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK--QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh--hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 46899999999999999998885432 233778888777654 34455555544321 111111111
Q ss_pred HHHHHHHHHh---cCCceEEEEeCC
Q 044085 236 LLQLQLENQL---KNKKFLLVLDDM 257 (1151)
Q Consensus 236 ~~~~~l~~~l---~~k~~LlVlDdv 257 (1151)
.....+.+++ +++.+|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223345555 378999999999
No 431
>PRK00131 aroK shikimate kinase; Reviewed
Probab=92.81 E-value=0.082 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..|.|+|++|+||||+|+.++..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999983
No 432
>PRK13949 shikimate kinase; Provisional
Probab=92.81 E-value=0.15 Score=50.30 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.1
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-|.|+|+.|+||||+|+.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999984
No 433
>PRK14528 adenylate kinase; Provisional
Probab=92.81 E-value=0.14 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+.|.|.|++|+||||+|+.+...
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999774
No 434
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.80 E-value=1.8 Score=48.24 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=78.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
|--.++|++|.|||+++.++++.. .| + +.=+..+...+-.+ ++.++.. ...+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L----~y-d-IydLeLt~v~~n~d-Lr~LL~~---------------------t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL----NY-D-IYDLELTEVKLDSD-LRHLLLA---------------------TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc----CC-c-eEEeeeccccCcHH-HHHHHHh---------------------CCCC
Confidence 345689999999999999999943 24 3 12223333222222 3333222 1345
Q ss_pred eEEEEeCCCCC------Ch------------hhHHhhhcccc--CCCC-CcEE-EEecCccccccc--cc--CCCceeec
Q 044085 250 FLLVLDDMWTE------NY------------DDWTNLCKPFK--AGLP-GSKI-IVTTRNEDVSSM--VT--TPSAAYSL 303 (1151)
Q Consensus 250 ~LlVlDdvw~~------~~------------~~~~~l~~~l~--~~~~-gs~i-ivTtr~~~v~~~--~~--~~~~~~~l 303 (1151)
-+||+.|+.-. .. .....+..++. |... +-|| +.||...+-.+. +. ...-.+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 66666666321 00 01111221111 1112 2354 567766543221 11 22226888
Q ss_pred CCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 304 ENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 304 ~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
.--+.+....||.+....+. .+ .++.+|.+.-.|--+.=..++..|
T Consensus 368 gyCtf~~fK~La~nYL~~~~---~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE---DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC---Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 88999998888887763221 22 455556555556555555555555
No 435
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.80 E-value=0.11 Score=64.40 Aligned_cols=187 Identities=16% Similarity=0.128 Sum_probs=87.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCC----CCcchHHHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSV----DVNDLNLLQLQLEN 243 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~l~~ 243 (1151)
+.+++.|+|+.+.||||+.+.+.-..-.. + +-.+|.+.... ...++..|...++... .......-...+..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~ma-q---~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMA-K---SGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHH-H---hCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 34688999999999999999986532111 1 11112221100 0011111111111000 01111111122222
Q ss_pred Hhc--CCceEEEEeCCCCC-ChhhHHhhh----ccccCCCCCcEEEEecCcccccccccCCCceeecCCCChhhhHHHHH
Q 044085 244 QLK--NKKFLLVLDDMWTE-NYDDWTNLC----KPFKAGLPGSKIIVTTRNEDVSSMVTTPSAAYSLENLLRDDCLSIFV 316 (1151)
Q Consensus 244 ~l~--~k~~LlVlDdvw~~-~~~~~~~l~----~~l~~~~~gs~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~ 316 (1151)
.+. .++-|+++|..-.. +..+-..+. ..+.. .|+.+|+||....++........+......-+++... |.
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~l~-~~ 477 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKIIATTHYKELKALMYNREGVENASVEFDEETLR-PT 477 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCcCc-EE
Confidence 222 47889999998542 333333332 22222 4789999999987765543322111111100111111 00
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHh
Q 044085 317 RHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLN 370 (1151)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~ 370 (1151)
.+. -.+.+. ...|-+|++++ |+|-.+.--|..+... ...++.+++.
T Consensus 478 Ykl-~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 523 (782)
T PRK00409 478 YRL-LIGIPG-----KSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIA 523 (782)
T ss_pred EEE-eeCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHH
Confidence 011 011111 24577788777 7999988888888655 3334444444
No 436
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.84 Score=45.95 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=35.2
Q ss_pred HHHHHhcCCceEEEEeCCCCC-ChhhHHhhhccccC-CCCCcEEEEecCcccccccccCC
Q 044085 240 QLENQLKNKKFLLVLDDMWTE-NYDDWTNLCKPFKA-GLPGSKIIVTTRNEDVSSMVTTP 297 (1151)
Q Consensus 240 ~l~~~l~~k~~LlVlDdvw~~-~~~~~~~l~~~l~~-~~~gs~iivTtr~~~v~~~~~~~ 297 (1151)
.+.+.+-=++=+.|||...+- |.+..+.+...+.. ..+|+-+|+.|..+.++......
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 344444556789999998542 23333333333222 23477788888888888877644
No 437
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=92.78 E-value=0.16 Score=50.80 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=31.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhh
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|.+..+..+.-..... .-+.|+|.+|+|||++|+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------HHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcCC--------CCeEEECCCCCCHHHHHHHHHH
Confidence 46889988887776655432 3688999999999999999865
No 438
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.76 E-value=0.15 Score=51.98 Aligned_cols=118 Identities=13% Similarity=0.133 Sum_probs=59.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVD----VNDLNLLQLQLENQL 245 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~l~~~l 245 (1151)
+++.|.|+.|.||||+.+.+....-.. +. . .+|... +....+...|...+..... ......-..++...+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la-~~-G--~~vpa~--~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMA-QI-G--CFVPAE--YATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHH-Hc-C--CCcchh--hcCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 689999999999999999987543211 11 1 111111 0011222233322221110 011111111222222
Q ss_pred --cCCceEEEEeCCCCC-ChhhH----HhhhccccCCCCCcEEEEecCccccccccc
Q 044085 246 --KNKKFLLVLDDMWTE-NYDDW----TNLCKPFKAGLPGSKIIVTTRNEDVSSMVT 295 (1151)
Q Consensus 246 --~~k~~LlVlDdvw~~-~~~~~----~~l~~~l~~~~~gs~iivTtr~~~v~~~~~ 295 (1151)
..++-|+++|..-.. +..+. ..+...+.. .|+.+|++|.+.+++....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 357889999997432 12221 122333332 3789999999988876654
No 439
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.74 E-value=0.58 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.2
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+++++|+.|+||||++..+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 369999999999999999988763
No 440
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.73 E-value=0.72 Score=45.03 Aligned_cols=114 Identities=16% Similarity=0.068 Sum_probs=61.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEE---EeCCCCCHHHHHHHHHHHhc----CCC---CCcc------
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWA---YVSEDFDAVGITKVILQAAV----GSV---DVND------ 233 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv---~vs~~~~~~~~~~~i~~~~~----~~~---~~~~------ 233 (1151)
..|-|++-.|.||||.|..+.-. ...+= ..+..+ .-........++... .+. ... ...+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~r--a~~~g-~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALR--ALGHG-KKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHH--HHHCC-CeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 47788888999999999887763 22221 222222 222123344444443 121 110 0111
Q ss_pred -hHHHHHHHHHHhcC-CceEEEEeCCCC---CChhhHHhhhccccCCCCCcEEEEecCcc
Q 044085 234 -LNLLQLQLENQLKN-KKFLLVLDDMWT---ENYDDWTNLCKPFKAGLPGSKIIVTTRNE 288 (1151)
Q Consensus 234 -~~~~~~~l~~~l~~-k~~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 288 (1151)
........++.+.. +-=++|||.+-. ......+++...+....++.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11122334444544 445999999831 11233456666666666678999999986
No 441
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.67 E-value=0.83 Score=54.82 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=59.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcc----hHHHHHHHHHHh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVND----LNLLQLQLENQL 245 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~----~~~~~~~l~~~l 245 (1151)
++..|.|.+|.||||++..+.........-+...+.+......-...+...+-..+..-..... ......-+++.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 4888999999999999999887432111111234444333222223333333222210000000 000123334444
Q ss_pred cC------------Cc---eEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcccc
Q 044085 246 KN------------KK---FLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDV 290 (1151)
Q Consensus 246 ~~------------k~---~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 290 (1151)
.- .+ =++|+|.+--.+......+..+++ +++|+|+---..+.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~QL 304 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQL 304 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhhc
Confidence 21 11 289999985555556666666665 46788776554443
No 442
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.66 E-value=0.095 Score=49.71 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=26.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE 210 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~ 210 (1151)
++|.|+|..|+|||||++.+.+... +..+ ...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~-~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGY-RVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCC-ceEEEEEccC
Confidence 4899999999999999999999543 2334 4444555444
No 443
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.65 E-value=0.012 Score=57.20 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=36.3
Q ss_pred ccEEEecCCCccccccccCCCCCCCcceEEeccCCC----CcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCee
Q 044085 1013 ITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLE----DEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERL 1086 (1151)
Q Consensus 1013 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L 1086 (1151)
++.++.+++.|...... .+.++++++.|.+.+|.. .+..+..+..+|+.|++++|+.|++-. .+..+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHH-HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 44555555554433222 133444444444444211 012222233455555555566655543 45555555555
Q ss_pred eEeCCC
Q 044085 1087 TLCECP 1092 (1151)
Q Consensus 1087 ~l~~c~ 1092 (1151)
.|.+-|
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 555543
No 444
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.65 E-value=0.077 Score=51.46 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3689999999999999999873
No 445
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.64 E-value=0.59 Score=49.29 Aligned_cols=87 Identities=22% Similarity=0.228 Sum_probs=53.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhh--hccCCCceEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCcchH---
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRV--EEHFPDFRAWAYVSEDFD-AVGITKVILQAAV--------GSVDVNDLN--- 235 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~f~~~~~wv~vs~~~~-~~~~~~~i~~~~~--------~~~~~~~~~--- 235 (1151)
.-++|.|-.|+|||+|+..+.++... +.+- +.++++-+.+... ..++..++...-. ...+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~-~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEEN-FAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCC-CEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 46799999999999999999886431 1223 6788888887653 4555555544311 011111111
Q ss_pred --HHHHHHHHHhc---CCceEEEEeCC
Q 044085 236 --LLQLQLENQLK---NKKFLLVLDDM 257 (1151)
Q Consensus 236 --~~~~~l~~~l~---~k~~LlVlDdv 257 (1151)
.....+.++++ ++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11223455553 68999999999
No 446
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.63 E-value=0.2 Score=50.37 Aligned_cols=21 Identities=57% Similarity=0.915 Sum_probs=18.8
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.|+|+|-||+||||+|..+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 689999999999999998555
No 447
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.63 E-value=0.88 Score=55.26 Aligned_cols=86 Identities=23% Similarity=0.239 Sum_probs=45.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC--HHHHHHHHHHHhc-CCCCCcchHHHHHHHHHHh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD--AVGITKVILQAAV-GSVDVNDLNLLQLQLENQL 245 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~--~~~~~~~i~~~~~-~~~~~~~~~~~~~~l~~~l 245 (1151)
.+|++++|+.|+||||.+.+++........- ..+..++. +.+. ..+-++...+.++ ......+.+++...+. .+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~-kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGA-DQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-AL 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCC-CeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-Hh
Confidence 4699999999999999999988744222111 23444443 3333 2233344444443 1112234444444443 23
Q ss_pred cCCceEEEEeCCC
Q 044085 246 KNKKFLLVLDDMW 258 (1151)
Q Consensus 246 ~~k~~LlVlDdvw 258 (1151)
+++ =+|++|=.-
T Consensus 262 ~~~-D~VLIDTAG 273 (767)
T PRK14723 262 GDK-HLVLIDTVG 273 (767)
T ss_pred cCC-CEEEEeCCC
Confidence 333 355666553
No 448
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.58 E-value=0.28 Score=46.80 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..++|+|-.|+||+|||+++..
T Consensus 40 QTlaiIG~NGSGKSTLakMlaG 61 (267)
T COG4167 40 QTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred cEEEEEccCCCcHhHHHHHHhc
Confidence 4789999999999999999854
No 449
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.58 E-value=0.09 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999873
No 450
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=92.57 E-value=1.1 Score=42.48 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhccc-CChhHHHHHHHHHHHHHhhHhH
Q 044085 4 VGEAFLVVTVEMLVEKLASEVIQLFARRGQIEADLKKWEELLLTIKVVLDDAEEKQI-TKPSVKTWLGKLQNLAFDAEDM 82 (1151)
Q Consensus 4 ~~~~~~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~~~d~ed~ 82 (1151)
+++|++.++++.++ ..+..........+.-+++|..+++.|.-++++.+.-.. -+..-+.-++++.+...+++++
T Consensus 6 ~~gaalG~~~~eLl----k~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 6 VGGAALGAVFGELL----KAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 44555555555544 444444455555678899999999999999999887543 2323378899999999999999
Q ss_pred HHHhhh
Q 044085 83 LDEFAT 88 (1151)
Q Consensus 83 ld~~~~ 88 (1151)
++.|..
T Consensus 82 V~k~sk 87 (147)
T PF05659_consen 82 VEKCSK 87 (147)
T ss_pred HHHhcc
Confidence 998854
No 451
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.57 E-value=0.21 Score=54.35 Aligned_cols=48 Identities=21% Similarity=0.204 Sum_probs=32.5
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
.+++.+.|.|||||||+|.+..- ...... ..+.-|+.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g-~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESG-KKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcC-CcEEEEEeCCCCchHhhhc
Confidence 36899999999999999988655 333444 4466666655555544443
No 452
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.55 E-value=0.16 Score=54.48 Aligned_cols=42 Identities=26% Similarity=0.179 Sum_probs=34.7
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED 211 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~ 211 (1151)
+.-+++.|+|.+|+|||++|.++.. +...+. ..++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~g-e~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREG-EPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcC-CcEEEEEecCC
Confidence 3557999999999999999999988 444556 78999988765
No 453
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.53 E-value=0.54 Score=53.57 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=51.2
Q ss_pred EEEEEecCCCccHHHHH-HHHhhchhhh-----ccCCCceEEEEeCCCCCHHHHHHHHHHHhc-CC--------CCCcch
Q 044085 170 SVIPITGMGGLGKTTLA-QLVFNDVRVE-----EHFPDFRAWAYVSEDFDAVGITKVILQAAV-GS--------VDVNDL 234 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~-----~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~-~~--------~~~~~~ 234 (1151)
.-++|.|..|+|||+|| ..+.+...+. ++- +.++++-+.+..+...-+.+.+++-+ -. .+....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~-~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNA-VISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCC-CEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 46799999999999997 6667754221 222 56788888877654333333333322 00 111111
Q ss_pred HH-----HHHHHHHHh--cCCceEEEEeCCC
Q 044085 235 NL-----LQLQLENQL--KNKKFLLVLDDMW 258 (1151)
Q Consensus 235 ~~-----~~~~l~~~l--~~k~~LlVlDdvw 258 (1151)
.. ....+.+++ +++..|+|+||+-
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCch
Confidence 11 122233444 5789999999993
No 454
>PRK13947 shikimate kinase; Provisional
Probab=92.53 E-value=0.088 Score=52.45 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
-|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999998
No 455
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.52 E-value=0.14 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|+.|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 58999999999999999999853
No 456
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.52 E-value=0.69 Score=49.42 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=30.1
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE 210 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~ 210 (1151)
.-+++.|.|.+|+|||++|.+++.... + . ...+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~-Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA-S-R-GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-h-C-CCcEEEEEecC
Confidence 457899999999999999999766422 1 2 25678888764
No 457
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.50 E-value=0.11 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|+|+|++|+||||+|+.+...
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4569999999999999999999883
No 458
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.50 E-value=0.095 Score=53.33 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchh
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVR 194 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~ 194 (1151)
+++..|.++||+|+||||..|+++.+..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~ 44 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLH 44 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHh
Confidence 4566888999999999999999988543
No 459
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.48 E-value=0.31 Score=47.63 Aligned_cols=118 Identities=14% Similarity=0.125 Sum_probs=60.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
.+++|+|..|.|||||++.+..... .. ...+++.-...... ........+.-..+...-+...-.+...+...+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~-~G~i~~~~~~~~~~--~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PT-SGEILIDGKDIAKL--PLEELRRRIGYVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CC-ccEEEECCEEcccC--CHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC
Confidence 4899999999999999999988432 22 34444332111110 001111111100001112222334556666678
Q ss_pred eEEEEeCCCCC-ChhhHHhhhccccCC-CCCcEEEEecCccccccc
Q 044085 250 FLLVLDDMWTE-NYDDWTNLCKPFKAG-LPGSKIIVTTRNEDVSSM 293 (1151)
Q Consensus 250 ~LlVlDdvw~~-~~~~~~~l~~~l~~~-~~gs~iivTtr~~~v~~~ 293 (1151)
-++++|+.-.. |......+...+... ..+.-++++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 89999998432 233344444333321 125678888877655443
No 460
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.47 E-value=0.12 Score=49.23 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+..||.+.|..|.||||+|.+++..
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999983
No 461
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=92.43 E-value=0.26 Score=49.78 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|+|+.|+||||+|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999988776
No 462
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.41 E-value=0.096 Score=52.70 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
++|+|+|+.|+||||||+.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999998
No 463
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.33 E-value=0.11 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEEecCCCccHHHHHHHHhhchh
Q 044085 172 IPITGMGGLGKTTLAQLVFNDVR 194 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~~ 194 (1151)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999998553
No 464
>PRK14526 adenylate kinase; Provisional
Probab=92.33 E-value=0.23 Score=50.89 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=18.5
Q ss_pred EEEecCCCccHHHHHHHHhh
Q 044085 172 IPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~ 191 (1151)
|.|+|++|+||||+|+.+..
T Consensus 3 i~l~G~pGsGKsT~a~~La~ 22 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSN 22 (211)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999886
No 465
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.28 E-value=0.58 Score=53.14 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=53.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC-CHHHHHHHHHHHhc-C-------CCCCcchHH----
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF-DAVGITKVILQAAV-G-------SVDVNDLNL---- 236 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~-~~~~~~~~i~~~~~-~-------~~~~~~~~~---- 236 (1151)
.-++|.|..|+|||||+.++..+.. ...+..++++-+.+.. ...++..++...-. . ..+......
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~--~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~ 221 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIA--KEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVA 221 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHH--hcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999887432 2223577888887654 34555555543211 0 111111111
Q ss_pred -HHHHHHHHh---cCCceEEEEeCC
Q 044085 237 -LQLQLENQL---KNKKFLLVLDDM 257 (1151)
Q Consensus 237 -~~~~l~~~l---~~k~~LlVlDdv 257 (1151)
....+.+++ +++.+|+++||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 222 LTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHhcCCeeEEEecch
Confidence 223455565 468999999999
No 466
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.27 E-value=0.093 Score=50.69 Aligned_cols=22 Identities=41% Similarity=0.680 Sum_probs=20.1
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+|.|+|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999983
No 467
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=92.24 E-value=0.44 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=19.3
Q ss_pred EEEecCCCccHHHHHHHHhhc
Q 044085 172 IPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~ 192 (1151)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999883
No 468
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.21 E-value=0.49 Score=53.43 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=50.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCcchHH----
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD-AVGITKVILQAAV--------GSVDVNDLNL---- 236 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~-~~~~~~~i~~~~~--------~~~~~~~~~~---- 236 (1151)
..++|+|..|+|||||++.++.... . +.++.+-+.+... ..++...++..-. ...+......
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~----~-dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTT----A-DVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCC----C-CEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 5789999999999999999987321 2 4556666766543 3444454433311 1111111111
Q ss_pred -HHHHHHHHh--cCCceEEEEeCC
Q 044085 237 -LQLQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 237 -~~~~l~~~l--~~k~~LlVlDdv 257 (1151)
.+..+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 122244444 589999999999
No 469
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.21 E-value=0.22 Score=47.98 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 148 EKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.+.+++|.+++.. ++++++|..|+|||||+..+..+.
T Consensus 23 ~~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 3567788888854 488999999999999999998853
No 470
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=2.2 Score=50.13 Aligned_cols=56 Identities=27% Similarity=0.291 Sum_probs=38.8
Q ss_pred CCCccccchhhHHHHHH---HHhcCCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchhh
Q 044085 140 DEDEVYGREKDKEALVG---LLRRDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV 195 (1151)
Q Consensus 140 ~~~~~vgr~~~~~~l~~---~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~ 195 (1151)
...++.|.++.++++.+ .|.+... -+..-++-|..+|++|.|||.||+++.....+
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V 209 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV 209 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC
Confidence 34578898876665555 4543321 02234567889999999999999999995543
No 471
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=92.17 E-value=0.5 Score=48.79 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=18.6
Q ss_pred EEEecCCCccHHHHHHHHhh
Q 044085 172 IPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~ 191 (1151)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999987
No 472
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.17 E-value=0.11 Score=51.14 Aligned_cols=22 Identities=50% Similarity=0.674 Sum_probs=19.0
Q ss_pred EEEecCCCccHHHHHHHHhhch
Q 044085 172 IPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
|.|+|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998854
No 473
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.16 E-value=0.56 Score=53.24 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=50.3
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH-HHHHHHHHHHhc--------CCCCCcchHH---
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA-VGITKVILQAAV--------GSVDVNDLNL--- 236 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~-~~~~~~i~~~~~--------~~~~~~~~~~--- 236 (1151)
-..++|+|..|+|||||++.+++... ++..+++-+.+.... .+...+.+..-+ ...+......
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~-----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD-----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 35789999999999999999998432 145566667665443 344444433321 1111111111
Q ss_pred --HHHHHHHHh--cCCceEEEEeCC
Q 044085 237 --LQLQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 237 --~~~~l~~~l--~~k~~LlVlDdv 257 (1151)
....+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 122244444 589999999999
No 474
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=92.15 E-value=0.5 Score=53.68 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=46.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc-------CCCCCcchHH-----H
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV-------GSVDVNDLNL-----L 237 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~-------~~~~~~~~~~-----~ 237 (1151)
..++|+|..|+|||||++.+..... .. ..++|..--+..+..++....+.... .+.+...... .
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~---pd-~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADA---FD-TVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CC-eeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 4789999999999999998886322 12 23333322233344444443333221 1111111111 1
Q ss_pred HHHHHHHh--cCCceEEEEeCC
Q 044085 238 QLQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 238 ~~~l~~~l--~~k~~LlVlDdv 257 (1151)
...+.+++ +++.+|+++||+
T Consensus 242 a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22233444 489999999999
No 475
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.15 E-value=0.65 Score=47.24 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|.|..|.|||||.+.+..-
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 476
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.13 E-value=0.61 Score=47.70 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999875
No 477
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.12 E-value=0.89 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.3
Q ss_pred eEEEEEecCCCccHHHHHHHHhhch
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.+|++++|+.|+||||++.+++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 3699999999999999999999744
No 478
>COG4639 Predicted kinase [General function prediction only]
Probab=92.11 E-value=0.11 Score=48.47 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=19.5
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...|++.|..|+||+|.|+.-+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC
Confidence 35789999999999999988444
No 479
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.10 E-value=0.34 Score=51.75 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=56.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
.+|.|.|..|+||||+++.+.+. +.. . ...+ +++.++.... ... ..++.. ...........++..++..+
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~-~-~~~i-itiEdp~E~~--~~~-~~q~~v--~~~~~~~~~~~l~~~lR~~P 150 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNT-P-EKNI-ITVEDPVEYQ--IPG-INQVQV--NEKAGLTFARGLRAILRQDP 150 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCC-C-CCeE-EEECCCceec--CCC-ceEEEe--CCcCCcCHHHHHHHHhccCC
Confidence 48999999999999999988763 211 1 2222 3343332110 000 011110 01111235567788888889
Q ss_pred eEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcccc
Q 044085 250 FLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDV 290 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 290 (1151)
=.|+++++.+ .+....+..+.. .|-.++-|..-.++
T Consensus 151 D~i~vgEiR~--~e~a~~~~~aa~---tGh~v~tTlHa~~~ 186 (264)
T cd01129 151 DIIMVGEIRD--AETAEIAVQAAL---TGHLVLSTLHTNDA 186 (264)
T ss_pred CEEEeccCCC--HHHHHHHHHHHH---cCCcEEEEeccCCH
Confidence 9999999955 333333333322 34445555554443
No 480
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.08 E-value=0.15 Score=51.37 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=26.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEE
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAY 207 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~ 207 (1151)
++|.|+|+.|+|||||++++.. ....+| ...++.+
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~-~~~v~~T 37 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQ--EFPDKF-GRVVSHT 37 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH--HSTTTE-EEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHH--hccccc-ccceeec
Confidence 5889999999999999999998 434556 3334433
No 481
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.06 E-value=0.099 Score=28.97 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=11.5
Q ss_pred CcccEEEecCccccccC
Q 044085 556 RRLRVLSLCGYWILQLP 572 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp 572 (1151)
++|++|++++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999998876
No 482
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.06 E-value=0.13 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999883
No 483
>PRK14531 adenylate kinase; Provisional
Probab=92.04 E-value=0.41 Score=48.16 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|.|+|++|+||||+|+.+...
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999883
No 484
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.03 E-value=1.2 Score=46.89 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=29.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED 211 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~ 211 (1151)
.-.++.|.|.+|+||||+|.++.... . ..- ...+|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g-~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDG-DPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcC-CeEEEEEccCC
Confidence 44689999999999999999876532 2 222 56788876443
No 485
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=91.91 E-value=0.49 Score=46.09 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.5
Q ss_pred EEEecCCCccHHHHHHHHhhc
Q 044085 172 IPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~ 192 (1151)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999885
No 486
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.89 E-value=0.49 Score=51.95 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEecCCCccHHHHHHHHhhch
Q 044085 172 IPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
+++.|+.|.||||+++.+.+..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998743
No 487
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=0.65 Score=46.96 Aligned_cols=56 Identities=21% Similarity=0.226 Sum_probs=40.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccC
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF 199 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 199 (1151)
+++-|.+..++++++.+.-.-.. +-..++-+..+|++|.|||-+|++.+. +....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa--qT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA--QTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH--hccchH
Confidence 35678899999999877533211 223456788999999999999999887 444445
No 488
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.85 E-value=5 Score=43.17 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccccccCCCceeecCCCChhhhHHHHH
Q 044085 247 NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSSMVTTPSAAYSLENLLRDDCLSIFV 316 (1151)
Q Consensus 247 ~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~lf~ 316 (1151)
+++=++|+||+...+...+..+...+..-.+++.+|++|.+ ..+.....+..+.+.+.. +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 55678999999888888888888888776666666666544 556665555555788876 6666666664
No 489
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=91.85 E-value=0.44 Score=49.75 Aligned_cols=76 Identities=18% Similarity=0.156 Sum_probs=41.9
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC--CCHHHHHHHHHHHh----c-CC--CCCcchHHHHHHH
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED--FDAVGITKVILQAA----V-GS--VDVNDLNLLQLQL 241 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~--~~~~~~~~~i~~~~----~-~~--~~~~~~~~~~~~l 241 (1151)
+|+|.|..|+||||+|+.+....+ ..= ..++.++...- ++....-..+.... . .. .+..+.+.+.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~--~~g-~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l 77 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA--REG-IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELF 77 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH--hcC-CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHH
Confidence 589999999999999999887332 211 12333333221 22222222222221 1 11 3556777777777
Q ss_pred HHHhcCCc
Q 044085 242 ENQLKNKK 249 (1151)
Q Consensus 242 ~~~l~~k~ 249 (1151)
+.+-+++.
T Consensus 78 ~~L~~g~~ 85 (277)
T cd02029 78 RTYGETGR 85 (277)
T ss_pred HHHHcCCC
Confidence 77766543
No 490
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=91.85 E-value=0.92 Score=49.36 Aligned_cols=47 Identities=19% Similarity=0.161 Sum_probs=34.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC-HHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD-AVGITKVI 221 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~-~~~~~~~i 221 (1151)
..++|.|..|+|||+|++++.+.. +- +.++++-+.+..+ +.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~-dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NS-DIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CC-CEEEEEEeCCChHHHHHHHHHH
Confidence 478999999999999999999853 22 6778888876543 44455554
No 491
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=91.85 E-value=0.28 Score=53.27 Aligned_cols=52 Identities=33% Similarity=0.513 Sum_probs=36.4
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccC
Q 044085 142 DEVYGREKDKEA---LVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF 199 (1151)
Q Consensus 142 ~~~vgr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f 199 (1151)
..+||..+.++. +++++..... .-+.|.|.|++|.|||+||..+.+ +.....
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~----aGr~iLiaGppGtGKTAlA~~ia~--eLG~~~ 78 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKI----AGRAILIAGPPGTGKTALAMAIAK--ELGEDV 78 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT------TT-EEEEEE-TTSSHHHHHHHHHH--HCTTTS
T ss_pred ccccChHHHHHHHHHHHHHHhcccc----cCcEEEEeCCCCCCchHHHHHHHH--HhCCCC
Confidence 478999877664 6777776543 346889999999999999999999 444443
No 492
>PRK14530 adenylate kinase; Provisional
Probab=91.82 E-value=0.12 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.1
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|.|+|++|+||||+|+.++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 493
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.81 E-value=0.12 Score=49.07 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=19.5
Q ss_pred EEEecCCCccHHHHHHHHhhc
Q 044085 172 IPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 172 i~I~G~~GiGKTtLa~~v~~~ 192 (1151)
|+|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999984
No 494
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.81 E-value=0.15 Score=45.18 Aligned_cols=21 Identities=43% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEEecCCCccHHHHHHHHh
Q 044085 170 SVIPITGMGGLGKTTLAQLVF 190 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~ 190 (1151)
..++|+|+.|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 588999999999999999976
No 495
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=91.80 E-value=0.13 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.3
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++.|+|+.|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7899999999999999999774
No 496
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.78 E-value=0.13 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|+|+|+.|+||||||+.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999984
No 497
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.76 E-value=0.65 Score=50.88 Aligned_cols=95 Identities=26% Similarity=0.212 Sum_probs=56.3
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc-CC
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV-GS 228 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~-~~ 228 (1151)
...++-+.|...-. .-.+|.|-|-+|+|||||.-++..+.. .. ..+.+ |+..-+..++ +.-+++++ ..
T Consensus 78 g~~EldRVLGGG~V----~Gs~iLIgGdPGIGKSTLLLQva~~lA--~~--~~vLY--VsGEES~~Qi-klRA~RL~~~~ 146 (456)
T COG1066 78 GIEELDRVLGGGLV----PGSVILIGGDPGIGKSTLLLQVAARLA--KR--GKVLY--VSGEESLQQI-KLRADRLGLPT 146 (456)
T ss_pred ChHHHHhhhcCCcc----cccEEEEccCCCCCHHHHHHHHHHHHH--hc--CcEEE--EeCCcCHHHH-HHHHHHhCCCc
Confidence 44556666654332 346899999999999999999998443 32 23455 4555444444 22344444 11
Q ss_pred C-----CCcchHHHHHHHHHHhcCCceEEEEeCCC
Q 044085 229 V-----DVNDLNLLQLQLENQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 229 ~-----~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 258 (1151)
. ...+.++....+. +.++-++|+|-+.
T Consensus 147 ~~l~l~aEt~~e~I~~~l~---~~~p~lvVIDSIQ 178 (456)
T COG1066 147 NNLYLLAETNLEDIIAELE---QEKPDLVVIDSIQ 178 (456)
T ss_pred cceEEehhcCHHHHHHHHH---hcCCCEEEEeccc
Confidence 1 1223444333333 3688999999984
No 498
>PHA02774 E1; Provisional
Probab=91.74 E-value=0.62 Score=54.02 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeC
Q 044085 151 KEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVS 209 (1151)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs 209 (1151)
...+..|+... ++-..+.|+|++|+|||.+|..+.+- .. +....||+..
T Consensus 421 l~~lk~~l~~~-----PKknciv~~GPP~TGKS~fa~sL~~~--L~---G~vi~fvN~~ 469 (613)
T PHA02774 421 LTALKDFLKGI-----PKKNCLVIYGPPDTGKSMFCMSLIKF--LK---GKVISFVNSK 469 (613)
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH--hC---CCEEEEEECc
Confidence 44555555322 34458999999999999999999983 22 1445677653
No 499
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.73 E-value=0.22 Score=51.50 Aligned_cols=118 Identities=13% Similarity=0.037 Sum_probs=59.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC----CCCcchHHHHHHHHHHh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS----VDVNDLNLLQLQLENQL 245 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~l 245 (1151)
+++.|.|+.|.||||+.+.+...... .+- .+..|..-.. ...+..|...+... ........-..++...+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~l-a~~-G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIM-AQI-GSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH-HhC-CCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 58899999999999999998773221 111 2233321100 00111111111100 01112222223333333
Q ss_pred c--CCceEEEEeCCCCCC----hhh-HHhhhccccCCCCCcEEEEecCcccccccc
Q 044085 246 K--NKKFLLVLDDMWTEN----YDD-WTNLCKPFKAGLPGSKIIVTTRNEDVSSMV 294 (1151)
Q Consensus 246 ~--~k~~LlVlDdvw~~~----~~~-~~~l~~~l~~~~~gs~iivTtr~~~v~~~~ 294 (1151)
+ .++-|+++|...... ... -..+...+... .++.+|++|.+.+++...
T Consensus 106 ~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 3 578999999974321 111 11223333332 578999999998876544
No 500
>PRK13975 thymidylate kinase; Provisional
Probab=91.73 E-value=0.14 Score=52.39 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.+|+|.|+.|+||||+|+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999843
Done!