Query 044085
Match_columns 1151
No_of_seqs 636 out of 5378
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 19:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.3E-48 1.8E-52 461.1 23.0 316 145-484 131-473 (549)
2 3rgz_A Protein brassinosteroid 100.0 1.9E-39 6.4E-44 406.4 27.9 568 520-1138 72-766 (768)
3 1vt4_I APAF-1 related killer D 100.0 3.7E-39 1.3E-43 383.1 24.7 286 143-476 129-437 (1221)
4 3sfz_A APAF-1, apoptotic pepti 100.0 2.6E-36 8.9E-41 403.8 30.1 312 140-483 122-453 (1249)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-35 9.9E-40 366.0 37.0 552 498-1116 23-621 (680)
6 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-35 1.4E-39 364.6 36.9 529 525-1114 25-594 (680)
7 3rgz_A Protein brassinosteroid 100.0 8.5E-37 2.9E-41 382.3 21.7 251 844-1097 410-743 (768)
8 3vq2_A TLR4, TOLL-like recepto 100.0 7.8E-35 2.7E-39 357.1 33.4 507 498-1115 30-556 (606)
9 3t6q_A CD180 antigen; protein- 100.0 6.3E-34 2.2E-38 349.1 31.7 467 548-1116 49-559 (606)
10 1z6t_A APAF-1, apoptotic prote 100.0 1.6E-33 5.3E-38 343.0 29.3 304 141-479 123-449 (591)
11 3t6q_A CD180 antigen; protein- 100.0 2.3E-33 7.8E-38 344.1 29.3 505 497-1093 30-559 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.7E-32 1.6E-36 343.0 36.4 484 498-1045 22-535 (844)
13 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-32 1.8E-36 342.7 36.6 495 523-1115 22-558 (844)
14 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-32 4.3E-37 337.5 28.4 481 525-1115 32-532 (606)
15 4eco_A Uncharacterized protein 100.0 2.7E-32 9.2E-37 333.2 25.3 385 589-1117 193-632 (636)
16 2z81_A CD282 antigen, TOLL-lik 100.0 8.4E-32 2.9E-36 326.1 28.3 457 556-1115 26-508 (549)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-31 4.5E-36 321.7 28.8 427 556-1116 21-480 (520)
18 4ecn_A Leucine-rich repeat pro 100.0 1.8E-31 6.1E-36 329.6 29.3 168 589-826 435-627 (876)
19 2z63_A TOLL-like receptor 4, v 100.0 7.3E-31 2.5E-35 319.7 31.6 483 498-1093 26-530 (570)
20 2z63_A TOLL-like receptor 4, v 100.0 2.1E-30 7.1E-35 315.8 27.3 472 525-1115 28-529 (570)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.3E-30 1.5E-34 310.9 29.8 431 556-1115 52-508 (562)
22 2z81_A CD282 antigen, TOLL-lik 100.0 2.6E-30 8.9E-35 313.0 26.7 491 556-1142 5-507 (549)
23 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-30 1.2E-34 309.2 26.5 425 525-1092 21-479 (520)
24 4eco_A Uncharacterized protein 100.0 7E-31 2.4E-35 320.7 19.9 353 566-1046 193-597 (636)
25 4ecn_A Leucine-rich repeat pro 100.0 5.1E-30 1.8E-34 316.6 23.2 355 566-1046 435-837 (876)
26 1jl5_A Outer protein YOPM; leu 100.0 1E-28 3.4E-33 287.6 25.1 403 555-1115 10-427 (454)
27 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-27 5.4E-32 294.9 34.8 496 526-1115 53-578 (635)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-27 3.8E-32 289.7 28.2 425 525-1092 52-508 (562)
29 1o6v_A Internalin A; bacterial 99.9 1.1E-26 3.9E-31 273.6 28.0 100 555-660 45-144 (466)
30 3v47_A TOLL-like receptor 5B a 99.9 7.4E-27 2.5E-31 275.4 24.7 133 940-1096 274-410 (455)
31 1jl5_A Outer protein YOPM; leu 99.9 1.8E-26 6.1E-31 268.6 26.5 369 577-1116 9-408 (454)
32 4g8a_A TOLL-like receptor 4; l 99.9 9.4E-27 3.2E-31 288.0 23.7 483 556-1115 52-553 (635)
33 3v47_A TOLL-like receptor 5B a 99.9 1.2E-26 4E-31 273.7 23.4 112 934-1046 292-405 (455)
34 1o6v_A Internalin A; bacterial 99.9 4.8E-26 1.6E-30 268.3 23.6 119 524-657 45-163 (466)
35 3bz5_A Internalin-J, INLJ; leu 99.9 2.5E-25 8.5E-30 259.2 19.8 95 554-657 40-134 (457)
36 4fmz_A Internalin; leucine ric 99.9 6E-25 2E-29 248.8 20.2 98 553-656 41-138 (347)
37 2id5_A Lingo-1, leucine rich r 99.9 9.6E-24 3.3E-28 250.0 26.7 93 559-655 14-109 (477)
38 3o6n_A APL1; leucine-rich repe 99.9 7.6E-24 2.6E-28 243.6 23.8 83 554-637 43-128 (390)
39 2id5_A Lingo-1, leucine rich r 99.9 5.1E-24 1.7E-28 252.4 22.8 296 556-1024 32-333 (477)
40 3oja_B Anopheles plasmodium-re 99.9 6.8E-24 2.3E-28 257.6 23.5 82 555-637 50-134 (597)
41 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-23 4E-28 245.1 23.8 341 572-1099 35-392 (457)
42 3o6n_A APL1; leucine-rich repe 99.9 9E-24 3.1E-28 243.0 22.2 60 578-638 44-105 (390)
43 4fmz_A Internalin; leucine ric 99.9 1.4E-23 4.7E-28 237.6 21.2 305 574-1046 39-343 (347)
44 3oja_B Anopheles plasmodium-re 99.9 5.6E-23 1.9E-27 249.6 23.1 126 523-656 49-177 (597)
45 1xku_A Decorin; proteoglycan, 99.9 4.2E-21 1.4E-25 215.1 24.9 110 935-1046 210-329 (330)
46 2ft3_A Biglycan; proteoglycan, 99.9 6.6E-21 2.2E-25 213.6 23.6 85 556-644 33-119 (332)
47 2ft3_A Biglycan; proteoglycan, 99.9 5.5E-21 1.9E-25 214.2 20.7 286 579-1046 33-330 (332)
48 1ogq_A PGIP-2, polygalacturona 99.9 1.3E-21 4.4E-26 216.6 14.5 100 556-655 50-154 (313)
49 1xku_A Decorin; proteoglycan, 99.9 1E-20 3.4E-25 212.0 20.7 94 557-656 32-127 (330)
50 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.3E-25 208.5 18.0 192 554-806 79-271 (328)
51 3g06_A SSPH2 (leucine-rich rep 99.8 8.6E-20 3E-24 218.3 23.6 78 556-643 40-117 (622)
52 3ogk_B Coronatine-insensitive 99.8 4.4E-22 1.5E-26 243.3 -1.8 84 554-637 110-203 (592)
53 2z80_A TOLL-like receptor 2, v 99.8 1.2E-19 4.1E-24 205.3 17.7 271 554-1026 29-316 (353)
54 1ogq_A PGIP-2, polygalacturona 99.8 3.7E-20 1.3E-24 204.9 12.4 110 934-1045 166-277 (313)
55 3ogk_B Coronatine-insensitive 99.8 1.3E-21 4.4E-26 239.1 -1.1 109 937-1045 432-547 (592)
56 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-18 3.7E-23 208.8 23.7 262 578-1027 39-300 (622)
57 1z7x_W Ribonuclease inhibitor; 99.8 2.6E-22 8.8E-27 237.0 -8.9 113 934-1047 277-409 (461)
58 3zyi_A Leucine-rich repeat-con 99.8 1.7E-18 5.7E-23 202.9 23.2 78 558-638 56-135 (452)
59 3zyj_A Leucine-rich repeat-con 99.8 2E-18 6.8E-23 201.4 23.6 78 558-638 45-124 (440)
60 1z7x_W Ribonuclease inhibitor; 99.8 4.8E-22 1.6E-26 234.7 -8.1 89 550-639 22-126 (461)
61 2z66_A Variable lymphocyte rec 99.8 9.1E-19 3.1E-23 193.8 18.3 93 559-655 10-106 (306)
62 4fcg_A Uncharacterized protein 99.8 1.7E-18 5.8E-23 192.6 19.6 229 739-1045 80-310 (328)
63 3zyj_A Leucine-rich repeat-con 99.8 5E-18 1.7E-22 198.0 23.3 244 742-1046 45-289 (440)
64 3zyi_A Leucine-rich repeat-con 99.8 4.8E-18 1.6E-22 199.0 23.2 244 742-1046 56-300 (452)
65 2z66_A Variable lymphocyte rec 99.8 4.6E-18 1.6E-22 188.1 18.0 53 743-799 10-63 (306)
66 3o53_A Protein LRIM1, AGAP0063 99.7 9.9E-19 3.4E-23 194.1 8.7 102 941-1045 169-271 (317)
67 1wwl_A Monocyte differentiatio 99.7 9.1E-19 3.1E-23 193.9 7.2 84 552-638 39-133 (312)
68 3o53_A Protein LRIM1, AGAP0063 99.7 1E-18 3.5E-23 193.9 7.2 83 549-637 27-110 (317)
69 2z80_A TOLL-like receptor 2, v 99.7 2.5E-17 8.5E-22 186.2 18.6 106 740-866 31-137 (353)
70 2p1m_B Transport inhibitor res 99.7 4.8E-20 1.6E-24 225.4 -6.2 208 552-798 101-324 (594)
71 3oja_A Leucine-rich immune mol 99.7 5.9E-18 2E-22 198.9 11.4 101 941-1044 169-270 (487)
72 1ozn_A Reticulon 4 receptor; N 99.7 9.7E-17 3.3E-21 175.3 19.9 219 743-1046 14-235 (285)
73 1ozn_A Reticulon 4 receptor; N 99.7 6.3E-16 2.2E-20 168.8 20.5 134 935-1092 99-236 (285)
74 1wwl_A Monocyte differentiatio 99.7 1.2E-17 4.2E-22 184.8 5.7 149 941-1115 149-307 (312)
75 3oja_A Leucine-rich immune mol 99.7 8.5E-17 2.9E-21 189.0 12.8 126 941-1093 120-249 (487)
76 1p9a_G Platelet glycoprotein I 99.7 1E-15 3.5E-20 166.7 19.7 197 848-1115 6-206 (290)
77 2p1m_B Transport inhibitor res 99.7 5.3E-19 1.8E-23 216.1 -7.6 384 548-1046 58-491 (594)
78 2o6q_A Variable lymphocyte rec 99.6 5.7E-15 2E-19 159.5 21.2 193 852-1115 16-216 (270)
79 2xwt_C Thyrotropin receptor; s 99.6 2.5E-15 8.4E-20 159.2 17.8 174 937-1117 51-239 (239)
80 2o6q_A Variable lymphocyte rec 99.6 8.5E-15 2.9E-19 158.2 20.2 55 741-799 17-72 (270)
81 2xwt_C Thyrotropin receptor; s 99.6 4.7E-15 1.6E-19 157.1 17.7 48 752-804 23-71 (239)
82 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.8E-19 162.9 22.1 105 743-866 12-117 (350)
83 1p9a_G Platelet glycoprotein I 99.6 5.4E-15 1.9E-19 161.0 18.1 111 933-1045 92-204 (290)
84 2qen_A Walker-type ATPase; unk 99.6 2.6E-14 8.9E-19 161.5 22.9 295 139-476 9-349 (350)
85 1w5s_A Origin recognition comp 99.6 1.6E-14 5.6E-19 167.2 21.2 313 141-471 21-387 (412)
86 4ay9_X Follicle-stimulating ho 99.6 1.3E-14 4.5E-19 163.2 19.5 95 559-655 12-109 (350)
87 2z62_A TOLL-like receptor 4, v 99.6 1.7E-14 5.8E-19 156.6 18.4 95 750-866 17-113 (276)
88 1h6u_A Internalin H; cell adhe 99.6 2.5E-15 8.5E-20 165.5 10.9 190 554-799 39-228 (308)
89 2z62_A TOLL-like receptor 4, v 99.6 5.5E-15 1.9E-19 160.5 12.8 54 744-799 181-235 (276)
90 1h6u_A Internalin H; cell adhe 99.6 6.9E-15 2.4E-19 161.9 13.8 154 937-1099 81-234 (308)
91 3rfs_A Internalin B, repeat mo 99.6 1.2E-14 3.9E-19 157.2 14.6 176 554-799 39-216 (272)
92 3qfl_A MLA10; coiled-coil, (CC 99.6 3E-15 1E-19 134.3 7.9 80 12-91 2-83 (115)
93 3rfs_A Internalin B, repeat mo 99.6 4.8E-14 1.6E-18 152.4 17.6 155 936-1092 58-216 (272)
94 4glp_A Monocyte differentiatio 99.5 3.5E-14 1.2E-18 156.9 14.4 36 764-799 90-128 (310)
95 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4.2E-18 147.2 18.0 168 943-1116 16-191 (251)
96 2fna_A Conserved hypothetical 99.5 2.2E-13 7.5E-18 154.4 21.0 293 140-475 11-356 (357)
97 3m19_A Variable lymphocyte rec 99.5 1.9E-13 6.7E-18 145.6 18.3 134 935-1092 53-190 (251)
98 4glp_A Monocyte differentiatio 99.5 8.2E-14 2.8E-18 153.9 13.3 205 554-799 89-305 (310)
99 2ast_B S-phase kinase-associat 99.5 1.9E-15 6.4E-20 169.8 -0.8 108 551-658 63-176 (336)
100 2ast_B S-phase kinase-associat 99.5 5.1E-15 1.7E-19 166.2 -0.0 109 937-1046 164-282 (336)
101 4ezg_A Putative uncharacterize 99.5 1.7E-13 5.8E-18 139.9 11.0 151 939-1115 42-192 (197)
102 1h6t_A Internalin B; cell adhe 99.4 1.9E-13 6.4E-18 149.0 11.0 169 553-799 43-211 (291)
103 2v9t_B SLIT homolog 2 protein 99.4 8.5E-13 2.9E-17 137.1 15.5 146 944-1115 14-163 (220)
104 2ca6_A RAN GTPase-activating p 99.4 4.9E-15 1.7E-19 169.6 -1.8 215 548-799 24-285 (386)
105 4ezg_A Putative uncharacterize 99.4 3.2E-13 1.1E-17 137.8 11.9 136 930-1092 56-192 (197)
106 3cvr_A Invasion plasmid antige 99.4 1.2E-12 4.1E-17 154.4 17.8 162 932-1116 73-242 (571)
107 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 137.2 15.2 147 943-1115 21-170 (229)
108 1h6t_A Internalin B; cell adhe 99.4 4.5E-13 1.5E-17 145.9 12.6 147 937-1091 64-210 (291)
109 3cvr_A Invasion plasmid antige 99.4 8E-13 2.7E-17 156.0 15.6 174 853-1093 60-242 (571)
110 3goz_A Leucine-rich repeat-con 99.4 1.5E-14 5.3E-19 163.5 0.9 85 942-1026 197-299 (362)
111 2ca6_A RAN GTPase-activating p 99.4 3.5E-15 1.2E-19 170.8 -4.8 259 556-866 9-316 (386)
112 2v9t_B SLIT homolog 2 protein 99.4 2.4E-12 8.3E-17 133.6 15.1 137 930-1092 23-163 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 3E-12 1E-16 133.0 14.9 146 944-1115 14-164 (220)
114 1m9s_A Internalin B; cell inva 99.4 5.7E-13 2E-17 159.3 10.1 102 553-660 40-141 (605)
115 2qby_B CDC6 homolog 3, cell di 99.4 1.8E-11 6.2E-16 139.9 22.2 294 142-458 20-339 (384)
116 2v1u_A Cell division control p 99.4 2.6E-11 9E-16 138.9 23.5 295 141-458 18-351 (387)
117 3goz_A Leucine-rich repeat-con 99.4 1.9E-14 6.3E-19 162.9 -3.8 137 941-1092 138-295 (362)
118 1m9s_A Internalin B; cell inva 99.4 1.7E-12 5.9E-17 155.2 12.6 154 936-1098 60-213 (605)
119 1xeu_A Internalin C; cellular 99.3 2.3E-12 7.7E-17 137.9 11.3 153 936-1098 36-188 (263)
120 3e6j_A Variable lymphocyte rec 99.3 8.2E-12 2.8E-16 130.6 14.8 137 929-1092 30-170 (229)
121 2o6s_A Variable lymphocyte rec 99.3 6.6E-12 2.3E-16 129.5 13.5 105 940-1045 27-133 (208)
122 2o6s_A Variable lymphocyte rec 99.3 1.7E-11 5.7E-16 126.5 16.4 144 944-1092 10-159 (208)
123 2xot_A Amphoterin-induced prot 99.3 4E-12 1.4E-16 143.4 12.4 159 930-1115 30-200 (361)
124 1xeu_A Internalin C; cellular 99.3 7.7E-13 2.6E-17 141.6 6.0 166 555-799 18-183 (263)
125 2v70_A SLIT-2, SLIT homolog 2 99.3 1E-11 3.5E-16 128.9 14.1 137 930-1092 23-164 (220)
126 1fnn_A CDC6P, cell division co 99.3 1E-10 3.5E-15 134.0 22.0 296 142-458 17-351 (389)
127 2xot_A Amphoterin-induced prot 99.3 1.5E-11 5E-16 138.8 14.1 146 944-1115 21-174 (361)
128 2qby_A CDC6 homolog 1, cell di 99.3 6.4E-11 2.2E-15 135.6 19.1 295 141-458 19-348 (386)
129 2wfh_A SLIT homolog 2 protein 99.2 3.9E-11 1.3E-15 121.4 13.5 123 944-1092 13-137 (193)
130 2ell_A Acidic leucine-rich nuc 99.2 2.6E-11 9E-16 120.1 10.5 131 524-663 23-160 (168)
131 2ell_A Acidic leucine-rich nuc 99.2 1.9E-11 6.6E-16 121.1 9.4 134 940-1099 23-164 (168)
132 1w8a_A SLIT protein; signaling 99.2 5E-11 1.7E-15 120.7 12.5 124 944-1092 11-137 (192)
133 2je0_A Acidic leucine-rich nuc 99.2 1.9E-11 6.6E-16 118.3 7.9 125 525-658 17-148 (149)
134 2o6r_A Variable lymphocyte rec 99.2 1.6E-10 5.5E-15 115.5 13.8 125 943-1092 9-135 (177)
135 1njg_A DNA polymerase III subu 99.2 3.2E-10 1.1E-14 120.6 17.1 197 142-356 23-231 (250)
136 1a9n_A U2A', U2A'; complex (nu 99.2 5.7E-11 2E-15 118.5 9.1 130 521-661 15-151 (176)
137 1a9n_A U2A', U2A'; complex (nu 99.1 3.7E-11 1.3E-15 119.9 5.6 107 937-1045 15-122 (176)
138 2je0_A Acidic leucine-rich nuc 99.1 6.9E-11 2.4E-15 114.3 6.1 109 553-663 14-126 (149)
139 4b8c_D Glucose-repressible alc 99.1 7.8E-11 2.7E-15 144.8 7.7 114 547-662 215-328 (727)
140 2chg_A Replication factor C sm 99.1 1.4E-09 4.7E-14 113.7 15.8 190 142-356 17-207 (226)
141 1w8a_A SLIT protein; signaling 99.1 5.5E-10 1.9E-14 113.0 12.2 114 930-1046 20-136 (192)
142 3sb4_A Hypothetical leucine ri 99.1 2.6E-10 8.7E-15 126.9 10.0 101 940-1043 225-328 (329)
143 2wfh_A SLIT homolog 2 protein 99.1 1.9E-10 6.6E-15 116.3 8.1 106 556-663 31-139 (193)
144 1hqc_A RUVB; extended AAA-ATPa 99.0 1.6E-09 5.3E-14 120.4 15.1 277 142-457 12-324 (324)
145 4b8c_D Glucose-repressible alc 99.0 5.8E-11 2E-15 146.0 3.0 120 521-649 220-339 (727)
146 1dce_A Protein (RAB geranylger 99.0 4.2E-10 1.4E-14 133.7 8.6 84 552-637 459-544 (567)
147 2o6r_A Variable lymphocyte rec 99.0 2.6E-09 9E-14 106.5 12.9 114 930-1046 19-134 (177)
148 3sb4_A Hypothetical leucine ri 99.0 3.6E-09 1.2E-13 117.6 14.9 97 555-656 48-154 (329)
149 1dce_A Protein (RAB geranylger 99.0 6.9E-10 2.4E-14 131.9 9.5 106 557-665 442-548 (567)
150 2r9u_A Variable lymphocyte rec 98.9 3E-09 1E-13 105.3 11.1 101 944-1046 15-115 (174)
151 3g39_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 104.9 10.9 103 942-1046 10-112 (170)
152 4fdw_A Leucine rich hypothetic 98.9 4.7E-08 1.6E-12 110.7 22.1 165 935-1132 220-395 (401)
153 3g39_A Variable lymphocyte rec 98.9 1.9E-09 6.6E-14 106.4 8.6 103 558-663 11-115 (170)
154 2r9u_A Variable lymphocyte rec 98.9 1.7E-09 5.9E-14 107.1 8.1 99 559-661 15-116 (174)
155 1sxj_B Activator 1 37 kDa subu 98.9 1.1E-08 3.7E-13 113.6 14.5 188 142-354 21-211 (323)
156 1ds9_A Outer arm dynein; leuci 98.8 9.7E-11 3.3E-15 119.4 -4.6 88 551-640 65-154 (198)
157 1ds9_A Outer arm dynein; leuci 98.8 1.2E-10 4.2E-15 118.7 -3.8 108 550-661 42-151 (198)
158 4fs7_A Uncharacterized protein 98.8 1.3E-07 4.5E-12 107.8 20.1 78 964-1045 298-375 (394)
159 1iqp_A RFCS; clamp loader, ext 98.7 7.1E-08 2.4E-12 107.2 13.3 190 142-356 25-215 (327)
160 4fdw_A Leucine rich hypothetic 98.7 6.3E-07 2.2E-11 101.4 20.8 62 980-1045 293-354 (401)
161 4fs7_A Uncharacterized protein 98.6 1.8E-06 6.1E-11 98.3 21.7 123 937-1090 249-375 (394)
162 3te6_A Regulatory protein SIR3 98.6 3.4E-07 1.2E-11 98.2 14.4 172 143-320 21-212 (318)
163 2ifg_A High affinity nerve gro 98.5 6.9E-08 2.4E-12 108.2 7.3 98 561-661 13-114 (347)
164 1jr3_A DNA polymerase III subu 98.5 1.1E-06 3.9E-11 99.4 15.7 196 142-354 16-222 (373)
165 2chq_A Replication factor C sm 98.4 1.7E-06 6E-11 95.4 15.4 186 142-355 17-206 (319)
166 2ifg_A High affinity nerve gro 98.4 4.5E-07 1.5E-11 101.5 9.4 93 930-1024 21-116 (347)
167 3pfi_A Holliday junction ATP-d 98.4 4.8E-06 1.6E-10 92.6 17.0 180 142-354 29-228 (338)
168 1sxj_D Activator 1 41 kDa subu 98.4 3.5E-06 1.2E-10 94.5 15.1 197 142-354 37-236 (353)
169 3pvs_A Replication-associated 98.3 6.3E-06 2.2E-10 94.0 16.6 201 142-372 26-244 (447)
170 4gt6_A Cell surface protein; l 98.3 1.7E-05 5.8E-10 90.2 19.3 85 548-635 55-146 (394)
171 1sxj_E Activator 1 40 kDa subu 98.3 4.2E-06 1.4E-10 93.8 13.6 199 142-355 14-239 (354)
172 1jbk_A CLPB protein; beta barr 98.3 1.6E-06 5.3E-11 87.8 8.4 46 142-193 22-67 (195)
173 3bos_A Putative DNA replicatio 98.2 1.6E-06 5.4E-11 91.4 8.2 176 142-354 28-218 (242)
174 3h4m_A Proteasome-activating n 98.2 1.8E-05 6.2E-10 85.5 16.2 187 141-352 16-230 (285)
175 3uk6_A RUVB-like 2; hexameric 98.2 7.4E-06 2.5E-10 92.3 13.4 199 142-353 44-303 (368)
176 2z4s_A Chromosomal replication 98.2 1.5E-05 5.1E-10 91.2 14.7 183 169-372 130-332 (440)
177 3u61_B DNA polymerase accessor 98.2 1.3E-05 4.4E-10 88.4 13.7 185 142-356 26-219 (324)
178 2qz4_A Paraplegin; AAA+, SPG7, 98.1 4.6E-05 1.6E-09 81.1 17.0 189 142-353 6-222 (262)
179 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.7E-11 84.1 4.1 37 1060-1096 116-154 (176)
180 1d2n_A N-ethylmaleimide-sensit 98.1 2.7E-05 9.2E-10 83.3 14.7 173 142-345 33-229 (272)
181 1sxj_A Activator 1 95 kDa subu 98.1 1.1E-05 3.7E-10 94.8 12.3 195 142-352 39-252 (516)
182 3un9_A NLR family member X1; l 98.1 2.5E-07 8.7E-12 103.6 -2.1 82 556-638 72-167 (372)
183 1a5t_A Delta prime, HOLB; zinc 98.0 7.4E-05 2.5E-09 82.3 16.6 172 148-352 8-204 (334)
184 3syl_A Protein CBBX; photosynt 98.0 2.7E-05 9.2E-10 85.2 12.7 159 143-320 32-218 (309)
185 4h09_A Hypothetical leucine ri 98.0 0.00048 1.6E-08 77.7 23.1 105 937-1045 213-319 (379)
186 3eie_A Vacuolar protein sortin 97.9 0.00027 9.1E-09 77.5 18.1 186 142-353 18-228 (322)
187 3d8b_A Fidgetin-like protein 1 97.9 0.00015 5.3E-09 80.5 16.3 188 142-354 84-296 (357)
188 4h09_A Hypothetical leucine ri 97.9 0.0015 5E-08 73.7 24.8 105 937-1045 236-342 (379)
189 3un9_A NLR family member X1; l 97.9 2.6E-06 8.9E-11 95.4 1.8 105 555-660 125-249 (372)
190 2ra8_A Uncharacterized protein 97.9 5.2E-06 1.8E-10 92.0 3.9 37 847-884 167-203 (362)
191 3n70_A Transport activator; si 97.9 1.9E-05 6.6E-10 75.0 6.9 114 143-287 2-115 (145)
192 4gt6_A Cell surface protein; l 97.9 0.0011 3.7E-08 75.2 22.6 62 981-1045 259-320 (394)
193 1xwi_A SKD1 protein; VPS4B, AA 97.8 0.00057 2E-08 74.5 19.3 190 142-354 12-224 (322)
194 3ec2_A DNA replication protein 97.8 4E-05 1.4E-09 76.0 9.2 121 147-287 19-142 (180)
195 1sxj_C Activator 1 40 kDa subu 97.8 0.00017 5.7E-09 79.9 15.1 186 142-352 25-211 (340)
196 2ra8_A Uncharacterized protein 97.8 1.5E-05 5.3E-10 88.2 6.4 61 594-657 164-226 (362)
197 2qp9_X Vacuolar protein sortin 97.8 0.00038 1.3E-08 77.1 17.5 189 141-353 50-261 (355)
198 1io0_A Tropomodulin; LRR prote 97.8 7.5E-06 2.6E-10 81.6 2.6 111 548-659 28-160 (185)
199 3rw6_A Nuclear RNA export fact 97.8 5.9E-06 2E-10 86.4 1.4 80 576-657 167-258 (267)
200 1l8q_A Chromosomal replication 97.7 0.00021 7.1E-09 78.6 13.8 171 151-349 23-204 (324)
201 3e4g_A ATP synthase subunit S, 97.7 1.4E-05 4.9E-10 77.0 3.2 81 964-1045 62-148 (176)
202 2w58_A DNAI, primosome compone 97.7 4.3E-05 1.5E-09 77.5 6.8 119 149-287 36-158 (202)
203 3b9p_A CG5977-PA, isoform A; A 97.7 0.00083 2.8E-08 72.7 17.5 187 142-353 21-233 (297)
204 2p65_A Hypothetical protein PF 97.7 6E-05 2.1E-09 75.3 7.6 45 142-192 22-66 (187)
205 3cf0_A Transitional endoplasmi 97.7 0.0011 3.6E-08 71.8 17.9 181 142-347 15-222 (301)
206 3hu3_A Transitional endoplasmi 97.7 0.00049 1.7E-08 79.2 15.9 186 142-352 204-414 (489)
207 3pxg_A Negative regulator of g 97.7 0.00014 4.9E-09 83.9 11.2 148 142-319 180-338 (468)
208 1in4_A RUVB, holliday junction 97.6 0.0013 4.4E-08 72.3 18.1 179 142-353 25-223 (334)
209 3rw6_A Nuclear RNA export fact 97.6 3.1E-05 1.1E-09 80.9 4.4 81 552-633 166-258 (267)
210 2zan_A Vacuolar protein sortin 97.6 0.0011 3.7E-08 75.9 17.5 190 141-353 133-345 (444)
211 1io0_A Tropomodulin; LRR prote 97.6 3.9E-05 1.3E-09 76.4 4.8 114 521-638 32-163 (185)
212 3vfd_A Spastin; ATPase, microt 97.6 0.0013 4.5E-08 74.1 18.0 188 141-352 114-325 (389)
213 4b4t_J 26S protease regulatory 97.5 0.0012 4.1E-08 72.6 15.4 180 142-346 148-354 (405)
214 3co5_A Putative two-component 97.5 6E-05 2E-09 71.3 4.5 110 143-287 5-115 (143)
215 2c9o_A RUVB-like 1; hexameric 97.5 0.00041 1.4E-08 79.9 12.4 98 251-353 298-410 (456)
216 4fcw_A Chaperone protein CLPB; 97.5 0.00062 2.1E-08 74.4 12.8 138 142-287 17-169 (311)
217 2gno_A DNA polymerase III, gam 97.4 0.00096 3.3E-08 71.7 13.4 149 146-319 1-152 (305)
218 1qvr_A CLPB protein; coiled co 97.4 0.00018 6.2E-09 90.0 8.8 156 142-318 170-344 (854)
219 4b4t_L 26S protease subunit RP 97.4 0.0026 9E-08 71.2 17.0 181 141-346 180-387 (437)
220 4b4t_H 26S protease regulatory 97.4 0.0022 7.7E-08 71.3 15.6 180 142-346 209-415 (467)
221 1ojl_A Transcriptional regulat 97.3 0.0004 1.4E-08 75.0 9.0 131 142-287 2-146 (304)
222 2bjv_A PSP operon transcriptio 97.3 0.00041 1.4E-08 73.6 9.1 133 142-287 6-150 (265)
223 1lv7_A FTSH; alpha/beta domain 97.3 0.0032 1.1E-07 66.3 15.8 185 142-351 12-223 (257)
224 4b4t_M 26S protease regulatory 97.3 0.0017 5.9E-08 72.5 13.5 179 141-345 180-386 (434)
225 4b4t_K 26S protease regulatory 97.3 0.0015 5.2E-08 73.0 12.9 180 141-345 171-378 (428)
226 3pxi_A Negative regulator of g 97.2 0.00077 2.6E-08 83.3 10.7 150 142-319 180-338 (758)
227 2ce7_A Cell division protein F 97.2 0.0055 1.9E-07 69.8 16.3 180 142-346 16-221 (476)
228 4b4t_I 26S protease regulatory 97.2 0.0037 1.3E-07 68.9 14.2 179 141-345 181-387 (437)
229 1ofh_A ATP-dependent HSL prote 97.1 0.0014 4.7E-08 71.6 10.8 51 142-192 15-73 (310)
230 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0037 1.3E-07 77.4 15.5 158 142-319 186-362 (758)
231 3pxi_A Negative regulator of g 97.1 0.00073 2.5E-08 83.5 9.0 156 142-318 491-674 (758)
232 2r62_A Cell division protease 97.0 0.00084 2.9E-08 71.4 7.5 158 142-319 11-196 (268)
233 2kjq_A DNAA-related protein; s 97.0 0.00047 1.6E-08 65.3 4.7 86 170-287 37-124 (149)
234 2r44_A Uncharacterized protein 96.9 0.0036 1.2E-07 68.9 11.7 152 142-320 27-199 (331)
235 2qgz_A Helicase loader, putati 96.7 0.0013 4.3E-08 71.1 5.9 57 147-208 133-189 (308)
236 3cf2_A TER ATPase, transitiona 96.7 0.016 5.6E-07 70.0 15.5 181 141-346 203-407 (806)
237 3m6a_A ATP-dependent protease 96.7 0.0033 1.1E-07 73.8 9.3 166 142-319 81-266 (543)
238 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0017 5.9E-08 68.6 5.5 68 169-258 123-192 (331)
239 3t15_A Ribulose bisphosphate c 96.5 0.0073 2.5E-07 64.8 9.7 26 167-192 34-59 (293)
240 1r6b_X CLPA protein; AAA+, N-t 96.5 0.004 1.4E-07 77.1 8.8 135 142-287 458-607 (758)
241 2cvh_A DNA repair and recombin 96.4 0.012 4E-07 60.2 10.5 83 169-258 20-115 (220)
242 1ixz_A ATP-dependent metallopr 96.4 0.036 1.2E-06 58.0 14.0 179 142-346 16-221 (254)
243 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.017 5.8E-07 66.3 11.2 44 142-193 22-65 (500)
244 1qvr_A CLPB protein; coiled co 96.2 0.01 3.4E-07 74.2 9.9 137 143-287 559-710 (854)
245 2dhr_A FTSH; AAA+ protein, hex 96.1 0.054 1.9E-06 62.0 14.7 177 141-346 30-236 (499)
246 1um8_A ATP-dependent CLP prote 96.1 0.027 9.1E-07 63.0 12.1 51 142-192 21-95 (376)
247 1iy2_A ATP-dependent metallopr 96.1 0.083 2.8E-06 56.0 15.4 181 141-346 39-245 (278)
248 1ypw_A Transitional endoplasmi 96.1 0.036 1.2E-06 68.2 14.1 159 141-319 203-385 (806)
249 2x8a_A Nuclear valosin-contain 96.0 0.043 1.5E-06 57.9 12.2 157 142-319 10-191 (274)
250 2b8t_A Thymidine kinase; deoxy 95.8 0.006 2E-07 61.7 4.5 111 169-288 12-126 (223)
251 3hr8_A Protein RECA; alpha and 95.6 0.031 1.1E-06 60.8 9.4 83 168-258 60-149 (356)
252 3rfe_A Platelet glycoprotein I 95.6 0.013 4.6E-07 53.6 5.6 53 559-613 11-66 (130)
253 1jr3_D DNA polymerase III, del 95.5 0.11 3.8E-06 57.0 13.9 159 169-353 18-185 (343)
254 3lw7_A Adenylate kinase relate 95.4 0.083 2.8E-06 51.4 11.2 20 170-189 2-21 (179)
255 1v5w_A DMC1, meiotic recombina 95.4 0.05 1.7E-06 59.5 10.4 52 168-219 121-175 (343)
256 3rfe_A Platelet glycoprotein I 95.4 0.017 5.8E-07 52.9 5.5 55 945-1000 12-68 (130)
257 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.046 1.6E-06 56.3 9.4 113 170-288 24-168 (235)
258 1n0w_A DNA repair protein RAD5 95.2 0.04 1.4E-06 57.2 8.4 48 170-217 25-75 (243)
259 1rz3_A Hypothetical protein rb 95.1 0.02 6.7E-07 57.5 5.5 44 146-192 2-45 (201)
260 1xp8_A RECA protein, recombina 95.1 0.065 2.2E-06 58.8 9.9 81 170-258 75-162 (366)
261 3ice_A Transcription terminati 95.0 0.028 9.7E-07 60.6 6.4 83 170-257 175-270 (422)
262 2z43_A DNA repair and recombin 94.9 0.046 1.6E-06 59.4 8.2 55 170-225 108-165 (324)
263 2i1q_A DNA repair and recombin 94.9 0.05 1.7E-06 59.2 8.4 57 168-225 97-166 (322)
264 2xxa_A Signal recognition part 94.9 0.16 5.5E-06 57.1 12.6 44 150-193 78-124 (433)
265 3io5_A Recombination and repai 94.7 0.11 3.8E-06 54.7 9.8 81 171-258 30-121 (333)
266 1g5t_A COB(I)alamin adenosyltr 94.6 0.039 1.3E-06 53.8 5.7 115 171-288 30-163 (196)
267 2zr9_A Protein RECA, recombina 94.4 0.084 2.9E-06 57.7 8.7 82 169-258 61-149 (349)
268 1vma_A Cell division protein F 94.4 0.16 5.5E-06 54.1 10.6 87 168-258 103-196 (306)
269 1odf_A YGR205W, hypothetical 3 94.4 0.16 5.5E-06 53.8 10.6 27 167-193 29-55 (290)
270 1u94_A RECA protein, recombina 94.3 0.12 4.2E-06 56.4 9.6 81 169-257 63-150 (356)
271 3dm5_A SRP54, signal recogniti 94.2 0.42 1.4E-05 53.4 13.6 25 168-192 99-123 (443)
272 1sky_E F1-ATPase, F1-ATP synth 93.9 0.16 5.5E-06 56.9 9.6 85 171-257 153-254 (473)
273 3c8u_A Fructokinase; YP_612366 93.9 0.044 1.5E-06 55.2 4.7 39 150-192 7-45 (208)
274 3jvv_A Twitching mobility prot 93.8 0.041 1.4E-06 60.2 4.5 110 170-291 124-234 (356)
275 2px0_A Flagellar biosynthesis 93.8 0.14 4.7E-06 54.5 8.5 25 169-193 105-129 (296)
276 3kl4_A SRP54, signal recogniti 93.8 0.41 1.4E-05 53.4 12.6 26 168-193 96-121 (433)
277 1qhx_A CPT, protein (chloramph 93.8 0.029 9.9E-07 54.9 3.0 22 170-191 4-25 (178)
278 3tqc_A Pantothenate kinase; bi 93.7 0.19 6.6E-06 53.8 9.5 45 145-191 70-114 (321)
279 3kb2_A SPBC2 prophage-derived 93.7 0.03 1E-06 54.5 3.0 22 170-191 2-23 (173)
280 4a74_A DNA repair and recombin 93.6 0.2 6.9E-06 51.2 9.3 48 169-216 25-75 (231)
281 1pgv_A TMD-1, tropomodulin TMD 93.5 0.068 2.3E-06 52.4 5.1 89 547-636 32-136 (197)
282 1ly1_A Polynucleotide kinase; 93.5 0.038 1.3E-06 54.2 3.4 22 170-191 3-24 (181)
283 1zp6_A Hypothetical protein AT 93.5 0.039 1.3E-06 54.8 3.5 24 169-192 9-32 (191)
284 3vaa_A Shikimate kinase, SK; s 93.4 0.036 1.2E-06 55.4 3.0 22 170-191 26-47 (199)
285 1gvn_B Zeta; postsegregational 93.3 0.081 2.8E-06 56.2 5.7 25 167-191 31-55 (287)
286 3uie_A Adenylyl-sulfate kinase 93.3 0.049 1.7E-06 54.5 3.8 25 169-193 25-49 (200)
287 1pzn_A RAD51, DNA repair and r 93.2 0.19 6.5E-06 55.0 8.6 50 168-217 130-182 (349)
288 2ga8_A Hypothetical 39.9 kDa p 93.2 0.075 2.6E-06 57.2 5.1 46 145-192 2-47 (359)
289 1kgd_A CASK, peripheral plasma 93.2 0.042 1.4E-06 53.9 3.0 23 170-192 6-28 (180)
290 2ffh_A Protein (FFH); SRP54, s 93.1 0.34 1.2E-05 54.1 10.6 26 168-193 97-122 (425)
291 1kag_A SKI, shikimate kinase I 93.1 0.035 1.2E-06 54.0 2.4 22 170-191 5-26 (173)
292 3trf_A Shikimate kinase, SK; a 93.1 0.044 1.5E-06 54.0 3.0 22 170-191 6-27 (185)
293 3hws_A ATP-dependent CLP prote 93.0 0.066 2.2E-06 59.4 4.7 50 143-192 16-74 (363)
294 2p5t_B PEZT; postsegregational 92.9 0.083 2.9E-06 55.0 5.1 41 150-191 14-54 (253)
295 2rhm_A Putative kinase; P-loop 92.9 0.055 1.9E-06 53.7 3.5 24 168-191 4-27 (193)
296 1nks_A Adenylate kinase; therm 92.8 0.055 1.9E-06 53.7 3.3 23 170-192 2-24 (194)
297 3e70_C DPA, signal recognition 92.7 0.54 1.8E-05 50.6 11.2 26 168-193 128-153 (328)
298 1knq_A Gluconate kinase; ALFA/ 92.7 0.071 2.4E-06 51.9 4.0 23 169-191 8-30 (175)
299 4eun_A Thermoresistant glucoki 92.7 0.055 1.9E-06 54.1 3.1 23 169-191 29-51 (200)
300 2yhs_A FTSY, cell division pro 92.7 0.79 2.7E-05 51.7 12.7 42 168-213 292-333 (503)
301 1j8m_F SRP54, signal recogniti 92.7 0.44 1.5E-05 50.6 10.3 87 169-258 98-190 (297)
302 3fwy_A Light-independent proto 92.7 0.06 2E-06 57.8 3.5 39 168-209 47-85 (314)
303 3lda_A DNA repair protein RAD5 92.6 0.26 8.8E-06 54.7 8.7 55 169-225 178-236 (400)
304 3tau_A Guanylate kinase, GMP k 92.6 0.06 2E-06 54.2 3.3 24 169-192 8-31 (208)
305 3umf_A Adenylate kinase; rossm 92.6 0.067 2.3E-06 53.8 3.6 26 167-192 27-52 (217)
306 4gp7_A Metallophosphoesterase; 92.5 0.063 2.2E-06 52.0 3.2 23 169-191 9-31 (171)
307 3t61_A Gluconokinase; PSI-biol 92.5 0.052 1.8E-06 54.4 2.7 24 169-192 18-41 (202)
308 1ukz_A Uridylate kinase; trans 92.4 0.08 2.7E-06 53.1 4.0 24 168-191 14-37 (203)
309 2bdt_A BH3686; alpha-beta prot 92.4 0.069 2.4E-06 52.8 3.5 22 170-191 3-24 (189)
310 2ze6_A Isopentenyl transferase 92.4 0.066 2.3E-06 55.7 3.4 23 170-192 2-24 (253)
311 3iij_A Coilin-interacting nucl 92.4 0.056 1.9E-06 53.0 2.7 24 169-192 11-34 (180)
312 1y63_A LMAJ004144AAA protein; 92.4 0.068 2.3E-06 52.6 3.3 23 169-191 10-32 (184)
313 1zuh_A Shikimate kinase; alpha 92.4 0.063 2.1E-06 51.9 3.0 24 168-191 6-29 (168)
314 1kht_A Adenylate kinase; phosp 92.3 0.066 2.3E-06 53.0 3.2 23 170-192 4-26 (192)
315 1uf9_A TT1252 protein; P-loop, 92.3 0.074 2.5E-06 53.3 3.6 24 168-191 7-30 (203)
316 1tev_A UMP-CMP kinase; ploop, 92.3 0.071 2.4E-06 53.0 3.4 23 169-191 3-25 (196)
317 3tr0_A Guanylate kinase, GMP k 92.3 0.068 2.3E-06 53.7 3.3 22 170-191 8-29 (205)
318 3asz_A Uridine kinase; cytidin 92.3 0.072 2.5E-06 53.8 3.4 25 168-192 5-29 (211)
319 1xjc_A MOBB protein homolog; s 92.3 0.069 2.4E-06 51.1 3.0 25 168-192 3-27 (169)
320 1via_A Shikimate kinase; struc 92.2 0.056 1.9E-06 52.7 2.4 21 171-191 6-26 (175)
321 1pgv_A TMD-1, tropomodulin TMD 92.2 0.12 4.2E-06 50.6 4.8 112 523-637 39-168 (197)
322 2qt1_A Nicotinamide riboside k 92.2 0.079 2.7E-06 53.3 3.6 24 168-191 20-43 (207)
323 3bh0_A DNAB-like replicative h 92.2 0.91 3.1E-05 48.8 12.2 51 170-225 69-119 (315)
324 2qor_A Guanylate kinase; phosp 92.1 0.06 2E-06 54.1 2.6 24 169-192 12-35 (204)
325 2jaq_A Deoxyguanosine kinase; 92.1 0.072 2.5E-06 53.4 3.2 22 171-192 2-23 (205)
326 1uj2_A Uridine-cytidine kinase 92.1 0.079 2.7E-06 55.2 3.6 25 168-192 21-45 (252)
327 2yvu_A Probable adenylyl-sulfa 92.1 0.093 3.2E-06 51.7 4.0 26 168-193 12-37 (186)
328 1ye8_A Protein THEP1, hypothet 92.1 0.076 2.6E-06 51.7 3.2 23 171-193 2-24 (178)
329 2j41_A Guanylate kinase; GMP, 92.1 0.075 2.6E-06 53.4 3.3 23 170-192 7-29 (207)
330 2c95_A Adenylate kinase 1; tra 92.1 0.071 2.4E-06 53.0 3.1 22 170-191 10-31 (196)
331 3l0o_A Transcription terminati 92.0 0.35 1.2E-05 52.2 8.3 52 153-211 164-216 (427)
332 1jjv_A Dephospho-COA kinase; P 92.0 0.082 2.8E-06 53.1 3.5 22 170-191 3-24 (206)
333 3cm0_A Adenylate kinase; ATP-b 92.0 0.09 3.1E-06 51.8 3.7 23 169-191 4-26 (186)
334 2if2_A Dephospho-COA kinase; a 92.0 0.073 2.5E-06 53.4 3.1 21 171-191 3-23 (204)
335 3a00_A Guanylate kinase, GMP k 92.0 0.061 2.1E-06 53.0 2.4 23 170-192 2-24 (186)
336 1ls1_A Signal recognition part 92.0 0.66 2.3E-05 49.2 10.6 25 169-193 98-122 (295)
337 2cdn_A Adenylate kinase; phosp 91.9 0.089 3E-06 52.6 3.6 25 168-192 19-43 (201)
338 3a4m_A L-seryl-tRNA(SEC) kinas 91.9 0.086 2.9E-06 55.2 3.6 24 169-192 4-27 (260)
339 2iyv_A Shikimate kinase, SK; t 91.9 0.059 2E-06 53.0 2.2 21 171-191 4-24 (184)
340 1qf9_A UMP/CMP kinase, protein 91.8 0.1 3.4E-06 51.7 3.9 23 169-191 6-28 (194)
341 1cke_A CK, MSSA, protein (cyti 91.8 0.079 2.7E-06 54.2 3.2 22 170-191 6-27 (227)
342 4a1f_A DNAB helicase, replicat 91.8 0.9 3.1E-05 48.9 11.4 52 170-226 47-98 (338)
343 3cf2_A TER ATPase, transitiona 91.8 0.22 7.4E-06 60.3 7.2 98 141-258 476-580 (806)
344 2grj_A Dephospho-COA kinase; T 91.8 0.094 3.2E-06 51.7 3.5 24 168-191 11-34 (192)
345 3tlx_A Adenylate kinase 2; str 91.7 0.13 4.5E-06 53.1 4.7 24 168-191 28-51 (243)
346 2hf9_A Probable hydrogenase ni 91.7 0.15 5E-06 52.1 5.0 39 148-192 23-61 (226)
347 3ney_A 55 kDa erythrocyte memb 91.7 0.088 3E-06 51.8 3.2 25 168-192 18-42 (197)
348 2pez_A Bifunctional 3'-phospho 91.7 0.099 3.4E-06 51.1 3.6 24 169-192 5-28 (179)
349 2plr_A DTMP kinase, probable t 91.7 0.096 3.3E-06 52.9 3.6 24 170-193 5-28 (213)
350 1e6c_A Shikimate kinase; phosp 91.6 0.071 2.4E-06 51.8 2.4 21 171-191 4-24 (173)
351 2j37_W Signal recognition part 91.6 1.4 4.6E-05 50.4 13.3 43 151-193 80-125 (504)
352 1zu4_A FTSY; GTPase, signal re 91.6 0.31 1E-05 52.4 7.5 27 167-193 103-129 (320)
353 1lvg_A Guanylate kinase, GMP k 91.5 0.073 2.5E-06 53.0 2.4 23 170-192 5-27 (198)
354 1ex7_A Guanylate kinase; subst 91.5 0.075 2.6E-06 51.9 2.4 21 171-191 3-23 (186)
355 2bwj_A Adenylate kinase 5; pho 91.5 0.085 2.9E-06 52.6 2.9 22 170-191 13-34 (199)
356 2pt5_A Shikimate kinase, SK; a 91.5 0.098 3.3E-06 50.5 3.2 21 171-191 2-22 (168)
357 2vli_A Antibiotic resistance p 91.4 0.069 2.4E-06 52.4 2.1 22 170-191 6-27 (183)
358 3aez_A Pantothenate kinase; tr 91.4 0.11 3.6E-06 55.9 3.7 25 168-192 89-113 (312)
359 1fx0_B ATP synthase beta chain 91.4 0.42 1.4E-05 53.6 8.5 86 170-257 166-275 (498)
360 2bbw_A Adenylate kinase 4, AK4 91.4 0.09 3.1E-06 54.6 3.1 23 169-191 27-49 (246)
361 2ck3_D ATP synthase subunit be 91.4 0.71 2.4E-05 51.6 10.2 53 170-224 154-207 (482)
362 2jeo_A Uridine-cytidine kinase 91.3 0.11 3.8E-06 53.8 3.7 24 169-192 25-48 (245)
363 3b9q_A Chloroplast SRP recepto 91.3 0.19 6.6E-06 53.5 5.5 25 168-192 99-123 (302)
364 2pbr_A DTMP kinase, thymidylat 91.2 0.1 3.5E-06 51.7 3.2 22 171-192 2-23 (195)
365 1tue_A Replication protein E1; 91.2 0.14 4.9E-06 50.1 4.0 37 151-192 45-81 (212)
366 1aky_A Adenylate kinase; ATP:A 91.2 0.1 3.4E-06 53.1 3.1 22 170-191 5-26 (220)
367 1htw_A HI0065; nucleotide-bind 91.1 0.13 4.6E-06 48.7 3.7 23 170-192 34-56 (158)
368 1nn5_A Similar to deoxythymidy 91.1 0.11 3.6E-06 52.7 3.2 24 169-192 9-32 (215)
369 2wsm_A Hydrogenase expression/ 91.0 0.14 4.8E-06 52.0 4.1 41 146-192 13-53 (221)
370 1rj9_A FTSY, signal recognitio 91.0 0.12 4E-06 55.2 3.4 24 169-192 102-125 (304)
371 2og2_A Putative signal recogni 90.8 0.22 7.6E-06 54.2 5.6 26 168-193 156-181 (359)
372 2wwf_A Thymidilate kinase, put 90.8 0.11 3.7E-06 52.5 3.0 25 169-193 10-34 (212)
373 1znw_A Guanylate kinase, GMP k 90.8 0.12 4.1E-06 51.9 3.2 22 170-191 21-42 (207)
374 3upu_A ATP-dependent DNA helic 90.7 0.43 1.5E-05 54.6 8.2 124 148-290 31-167 (459)
375 4e22_A Cytidylate kinase; P-lo 90.7 0.12 4E-06 53.8 3.2 22 170-191 28-49 (252)
376 2z0h_A DTMP kinase, thymidylat 90.7 0.12 4.2E-06 51.3 3.2 22 171-192 2-23 (197)
377 2f6r_A COA synthase, bifunctio 90.6 0.14 4.8E-06 54.2 3.7 24 168-191 74-97 (281)
378 1zd8_A GTP:AMP phosphotransfer 90.6 0.11 3.9E-06 53.0 2.9 22 170-191 8-29 (227)
379 1m7g_A Adenylylsulfate kinase; 90.5 0.15 5.2E-06 51.3 3.7 24 169-192 25-48 (211)
380 1z6g_A Guanylate kinase; struc 90.5 0.11 3.7E-06 52.7 2.6 22 170-191 24-45 (218)
381 1g8p_A Magnesium-chelatase 38 90.5 0.12 4.2E-06 57.0 3.2 45 142-192 24-68 (350)
382 2v54_A DTMP kinase, thymidylat 90.5 0.13 4.6E-06 51.4 3.3 23 170-192 5-27 (204)
383 2ged_A SR-beta, signal recogni 90.5 0.21 7.2E-06 49.3 4.7 25 168-192 47-71 (193)
384 1g41_A Heat shock protein HSLU 90.4 0.21 7.1E-06 55.9 5.0 51 142-192 15-73 (444)
385 3fb4_A Adenylate kinase; psych 90.4 0.14 4.7E-06 51.9 3.2 22 171-192 2-23 (216)
386 1gtv_A TMK, thymidylate kinase 90.3 0.078 2.7E-06 53.7 1.3 22 171-192 2-23 (214)
387 1vht_A Dephospho-COA kinase; s 90.3 0.16 5.5E-06 51.5 3.7 23 169-191 4-26 (218)
388 3gmt_A Adenylate kinase; ssgci 90.3 0.67 2.3E-05 46.6 8.1 22 171-192 10-31 (230)
389 1s96_A Guanylate kinase, GMP k 90.3 0.14 4.8E-06 51.7 3.1 24 169-192 16-39 (219)
390 3dl0_A Adenylate kinase; phosp 90.2 0.15 5E-06 51.7 3.2 21 171-191 2-22 (216)
391 2f1r_A Molybdopterin-guanine d 90.2 0.098 3.4E-06 50.4 1.8 24 170-193 3-26 (171)
392 2i3b_A HCR-ntpase, human cance 90.1 0.13 4.4E-06 50.5 2.6 23 171-193 3-25 (189)
393 1zak_A Adenylate kinase; ATP:A 90.1 0.12 4.2E-06 52.6 2.5 23 170-192 6-28 (222)
394 3d3q_A TRNA delta(2)-isopenten 90.0 0.16 5.5E-06 54.5 3.5 22 170-191 8-29 (340)
395 1sq5_A Pantothenate kinase; P- 90.0 0.3 1E-05 52.5 5.7 24 168-191 79-102 (308)
396 2q6t_A DNAB replication FORK h 89.9 1.2 4.3E-05 50.4 11.1 52 170-225 201-252 (444)
397 3nwj_A ATSK2; P loop, shikimat 89.9 0.12 4.3E-06 53.2 2.5 22 170-191 49-70 (250)
398 3b85_A Phosphate starvation-in 89.9 0.23 7.9E-06 49.6 4.3 22 171-192 24-45 (208)
399 3e1s_A Exodeoxyribonuclease V, 89.8 0.46 1.6E-05 55.7 7.5 104 170-286 205-314 (574)
400 3cmu_A Protein RECA, recombina 89.8 0.41 1.4E-05 63.4 7.6 82 168-257 1426-1514(2050)
401 3a8t_A Adenylate isopentenyltr 89.8 0.19 6.5E-06 53.7 3.7 24 168-191 39-62 (339)
402 1np6_A Molybdopterin-guanine d 89.7 0.17 6E-06 48.7 3.1 24 169-192 6-29 (174)
403 3r20_A Cytidylate kinase; stru 89.6 0.17 6E-06 51.2 3.2 22 170-191 10-31 (233)
404 1yrb_A ATP(GTP)binding protein 89.6 0.2 6.8E-06 52.5 3.8 26 167-192 12-37 (262)
405 3sr0_A Adenylate kinase; phosp 89.6 0.17 5.8E-06 50.4 3.1 82 171-268 2-93 (206)
406 3be4_A Adenylate kinase; malar 89.6 0.14 4.9E-06 51.8 2.6 23 170-192 6-28 (217)
407 3ake_A Cytidylate kinase; CMP 89.5 0.18 6.1E-06 50.6 3.2 21 171-191 4-24 (208)
408 3p32_A Probable GTPase RV1496/ 89.4 0.32 1.1E-05 53.4 5.5 38 151-192 65-102 (355)
409 3k1j_A LON protease, ATP-depen 89.4 0.23 7.7E-06 59.2 4.5 43 142-192 41-83 (604)
410 2onk_A Molybdate/tungstate ABC 89.4 0.18 6.1E-06 51.8 3.1 22 170-191 25-46 (240)
411 3exa_A TRNA delta(2)-isopenten 89.3 0.21 7.1E-06 52.7 3.6 22 170-191 4-25 (322)
412 3crm_A TRNA delta(2)-isopenten 89.2 0.2 6.8E-06 53.4 3.4 22 170-191 6-27 (323)
413 3lnc_A Guanylate kinase, GMP k 89.2 0.12 4.3E-06 52.9 1.8 22 170-191 28-50 (231)
414 3tif_A Uncharacterized ABC tra 89.2 0.18 6.3E-06 51.5 3.1 22 170-191 32-53 (235)
415 2ehv_A Hypothetical protein PH 89.1 0.19 6.5E-06 52.2 3.2 22 170-191 31-52 (251)
416 2xb4_A Adenylate kinase; ATP-b 89.1 0.2 6.8E-06 51.0 3.2 21 171-191 2-22 (223)
417 2pcj_A ABC transporter, lipopr 89.0 0.18 6.3E-06 51.1 2.9 22 170-191 31-52 (224)
418 1cr0_A DNA primase/helicase; R 89.0 0.56 1.9E-05 50.1 6.9 51 170-224 36-86 (296)
419 1a7j_A Phosphoribulokinase; tr 88.9 0.12 4.2E-06 54.8 1.6 25 168-192 4-28 (290)
420 3hjn_A DTMP kinase, thymidylat 88.9 0.87 3E-05 45.0 7.6 23 171-193 2-24 (197)
421 3foz_A TRNA delta(2)-isopenten 88.9 0.26 8.8E-06 51.9 3.9 24 168-191 9-32 (316)
422 1e4v_A Adenylate kinase; trans 88.8 0.2 7E-06 50.5 3.1 21 171-191 2-22 (214)
423 2v3c_C SRP54, signal recogniti 88.7 0.26 8.9E-06 55.4 4.1 44 150-193 77-123 (432)
424 3end_A Light-independent proto 88.6 0.5 1.7E-05 50.8 6.2 43 167-212 39-81 (307)
425 2vp4_A Deoxynucleoside kinase; 88.6 0.25 8.7E-06 50.4 3.7 25 168-192 19-43 (230)
426 2cbz_A Multidrug resistance-as 88.6 0.22 7.4E-06 51.1 3.1 23 170-192 32-54 (237)
427 1ak2_A Adenylate kinase isoenz 88.5 0.23 7.8E-06 50.9 3.3 23 170-192 17-39 (233)
428 3gfo_A Cobalt import ATP-bindi 88.5 0.21 7.3E-06 52.3 3.1 22 170-191 35-56 (275)
429 1oix_A RAS-related protein RAB 88.5 0.23 7.7E-06 49.1 3.1 24 169-192 29-52 (191)
430 1b0u_A Histidine permease; ABC 88.3 0.23 7.7E-06 51.8 3.1 22 170-191 33-54 (262)
431 2zej_A Dardarin, leucine-rich 88.3 0.22 7.4E-06 48.9 2.8 22 171-192 4-25 (184)
432 2wji_A Ferrous iron transport 88.3 0.29 9.9E-06 46.9 3.6 23 170-192 4-26 (165)
433 1sgw_A Putative ABC transporte 88.2 0.2 6.8E-06 50.3 2.5 22 170-191 36-57 (214)
434 1ji0_A ABC transporter; ATP bi 88.1 0.24 8.2E-06 50.9 3.1 22 170-191 33-54 (240)
435 1mv5_A LMRA, multidrug resista 88.1 0.26 8.7E-06 50.8 3.3 22 170-191 29-50 (243)
436 2olj_A Amino acid ABC transpor 88.0 0.24 8.2E-06 51.5 3.1 22 170-191 51-72 (263)
437 4g1u_C Hemin import ATP-bindin 88.0 0.24 8.3E-06 51.7 3.1 22 170-191 38-59 (266)
438 1ltq_A Polynucleotide kinase; 88.0 0.26 8.9E-06 52.9 3.4 22 170-191 3-24 (301)
439 4hlc_A DTMP kinase, thymidylat 87.9 1.5 5E-05 43.6 8.7 24 170-193 3-26 (205)
440 1g6h_A High-affinity branched- 87.9 0.25 8.5E-06 51.4 3.1 22 170-191 34-55 (257)
441 3zvl_A Bifunctional polynucleo 87.9 0.26 9E-06 55.4 3.5 25 168-192 257-281 (416)
442 2pze_A Cystic fibrosis transme 87.9 0.25 8.7E-06 50.3 3.1 23 170-192 35-57 (229)
443 2d2e_A SUFC protein; ABC-ATPas 87.9 0.26 9E-06 51.0 3.2 22 170-191 30-51 (250)
444 2ff7_A Alpha-hemolysin translo 87.8 0.26 8.8E-06 50.9 3.1 22 170-191 36-57 (247)
445 2dr3_A UPF0273 protein PH0284; 87.8 0.4 1.4E-05 49.5 4.6 38 170-210 24-61 (247)
446 3llm_A ATP-dependent RNA helic 87.8 1.3 4.3E-05 45.3 8.3 21 171-191 78-98 (235)
447 1vpl_A ABC transporter, ATP-bi 87.7 0.26 8.9E-06 51.1 3.1 22 170-191 42-63 (256)
448 2r6a_A DNAB helicase, replicat 87.7 2.7 9.1E-05 47.8 11.8 50 170-223 204-253 (454)
449 2dyk_A GTP-binding protein; GT 87.7 0.31 1.1E-05 46.2 3.5 23 170-192 2-24 (161)
450 1q57_A DNA primase/helicase; d 87.7 2.3 8E-05 49.1 11.5 54 169-226 242-295 (503)
451 4eaq_A DTMP kinase, thymidylat 87.7 0.33 1.1E-05 49.5 3.7 26 168-193 25-50 (229)
452 2zu0_C Probable ATP-dependent 87.6 0.27 9.3E-06 51.4 3.2 23 170-192 47-69 (267)
453 2f9l_A RAB11B, member RAS onco 87.6 0.26 9E-06 49.0 3.0 24 169-192 5-28 (199)
454 2r8r_A Sensor protein; KDPD, P 87.6 0.65 2.2E-05 46.3 5.7 106 171-288 8-127 (228)
455 2qmh_A HPR kinase/phosphorylas 87.6 0.3 1E-05 47.5 3.2 23 170-192 35-57 (205)
456 3mfy_A V-type ATP synthase alp 87.5 0.92 3.1E-05 51.4 7.4 47 170-221 228-275 (588)
457 2eyu_A Twitching motility prot 87.4 0.31 1.1E-05 50.7 3.4 109 170-291 26-136 (261)
458 2qi9_C Vitamin B12 import ATP- 87.4 0.28 9.5E-06 50.6 3.1 22 170-191 27-48 (249)
459 2ghi_A Transport protein; mult 87.4 0.28 9.6E-06 51.0 3.1 22 170-191 47-68 (260)
460 2ixe_A Antigen peptide transpo 87.4 0.28 9.5E-06 51.4 3.1 22 170-191 46-67 (271)
461 3vr4_D V-type sodium ATPase su 87.3 0.72 2.5E-05 51.2 6.3 87 171-257 153-257 (465)
462 2yz2_A Putative ABC transporte 87.1 0.29 1E-05 51.1 3.1 22 170-191 34-55 (266)
463 2nq2_C Hypothetical ABC transp 87.1 0.29 1E-05 50.6 3.0 23 170-192 32-54 (253)
464 1q3t_A Cytidylate kinase; nucl 87.0 0.32 1.1E-05 49.9 3.3 24 168-191 15-38 (236)
465 2ocp_A DGK, deoxyguanosine kin 87.0 0.33 1.1E-05 50.0 3.4 23 170-192 3-25 (241)
466 2ihy_A ABC transporter, ATP-bi 87.0 0.3 1E-05 51.4 3.1 23 170-192 48-70 (279)
467 2v9p_A Replication protein E1; 87.0 0.31 1.1E-05 51.6 3.2 22 170-191 127-148 (305)
468 2wjg_A FEOB, ferrous iron tran 86.7 0.4 1.4E-05 46.9 3.7 24 169-192 7-30 (188)
469 3bgw_A DNAB-like replicative h 86.7 3.4 0.00011 46.6 11.7 50 170-224 198-247 (444)
470 1svm_A Large T antigen; AAA+ f 86.5 0.34 1.2E-05 53.2 3.3 24 168-191 168-191 (377)
471 2ce2_X GTPase HRAS; signaling 86.5 0.33 1.1E-05 46.2 2.9 22 171-192 5-26 (166)
472 4edh_A DTMP kinase, thymidylat 86.3 1.1 3.6E-05 44.9 6.6 25 169-193 6-30 (213)
473 1ny5_A Transcriptional regulat 86.2 0.96 3.3E-05 50.3 6.8 46 143-192 138-183 (387)
474 1cp2_A CP2, nitrogenase iron p 86.2 0.75 2.6E-05 48.2 5.7 38 170-210 2-39 (269)
475 1z2a_A RAS-related protein RAB 86.1 0.47 1.6E-05 45.3 3.8 23 170-192 6-28 (168)
476 3eph_A TRNA isopentenyltransfe 86.0 0.38 1.3E-05 52.7 3.2 22 170-191 3-24 (409)
477 3gqb_B V-type ATP synthase bet 86.0 0.74 2.5E-05 51.1 5.5 87 171-257 149-260 (464)
478 3con_A GTPase NRAS; structural 85.9 0.37 1.3E-05 47.3 3.0 24 170-193 22-45 (190)
479 1nlf_A Regulatory protein REPA 85.9 0.36 1.2E-05 51.0 3.1 23 170-192 31-53 (279)
480 2pjz_A Hypothetical protein ST 85.9 0.38 1.3E-05 50.0 3.1 22 170-191 31-52 (263)
481 1p5z_B DCK, deoxycytidine kina 85.8 0.3 1E-05 51.1 2.3 25 168-192 23-47 (263)
482 1u0j_A DNA replication protein 85.8 0.7 2.4E-05 47.6 4.9 39 150-192 89-127 (267)
483 3nh6_A ATP-binding cassette SU 85.8 0.34 1.2E-05 51.5 2.7 22 170-191 81-102 (306)
484 3sop_A Neuronal-specific septi 85.7 0.38 1.3E-05 50.3 3.0 22 171-192 4-25 (270)
485 3ihw_A Centg3; RAS, centaurin, 85.5 0.41 1.4E-05 46.8 3.0 23 170-192 21-43 (184)
486 2r9v_A ATP synthase subunit al 85.5 1.3 4.4E-05 49.8 7.2 83 170-257 176-276 (515)
487 2gj8_A MNME, tRNA modification 85.4 0.46 1.6E-05 45.8 3.3 23 170-192 5-27 (172)
488 2lkc_A Translation initiation 85.4 0.48 1.6E-05 45.8 3.5 25 168-192 7-31 (178)
489 1u8z_A RAS-related protein RAL 85.4 0.42 1.4E-05 45.6 3.0 24 170-193 5-28 (168)
490 3dzd_A Transcriptional regulat 85.4 0.65 2.2E-05 51.2 4.8 47 142-192 129-175 (368)
491 1nij_A Hypothetical protein YJ 85.4 0.4 1.4E-05 51.7 3.1 25 168-192 3-27 (318)
492 2orw_A Thymidine kinase; TMTK, 85.3 0.43 1.5E-05 46.6 3.0 24 170-193 4-27 (184)
493 2nzj_A GTP-binding protein REM 85.3 0.55 1.9E-05 45.2 3.8 24 170-193 5-28 (175)
494 1m7b_A RND3/RHOE small GTP-bin 85.2 0.41 1.4E-05 46.7 2.9 24 169-192 7-30 (184)
495 1z08_A RAS-related protein RAB 85.2 0.43 1.5E-05 45.7 3.0 23 170-192 7-29 (170)
496 1c1y_A RAS-related protein RAP 85.2 0.44 1.5E-05 45.5 3.0 22 171-192 5-26 (167)
497 2erx_A GTP-binding protein DI- 85.1 0.43 1.5E-05 45.7 3.0 22 171-192 5-26 (172)
498 3oaa_A ATP synthase subunit al 85.1 1.8 6.2E-05 48.5 8.1 83 170-257 163-263 (513)
499 2qe7_A ATP synthase subunit al 85.0 0.8 2.7E-05 51.4 5.3 83 170-257 163-263 (502)
500 3q72_A GTP-binding protein RAD 85.0 0.38 1.3E-05 45.9 2.5 22 171-192 4-25 (166)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.3e-48 Score=461.12 Aligned_cols=316 Identities=18% Similarity=0.217 Sum_probs=258.3
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhh--chhhhccCCCceEEEEeCCCC--CHHHHHHH
Q 044085 145 YGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN--DVRVEEHFPDFRAWAYVSEDF--DAVGITKV 220 (1151)
Q Consensus 145 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~f~~~~~wv~vs~~~--~~~~~~~~ 220 (1151)
|||++++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++.+| +.++||++++.+ +...+++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-DSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-SEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-CcEEEEEECCCCCCCHHHHHHH
Confidence 599999999999997652 24679999999999999999999998 67888999 999999999985 88999999
Q ss_pred HHHHhcCCC--------CCcchHHHHHHHHHHhcCC-ceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccccc
Q 044085 221 ILQAAVGSV--------DVNDLNLLQLQLENQLKNK-KFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVS 291 (1151)
Q Consensus 221 i~~~~~~~~--------~~~~~~~~~~~l~~~l~~k-~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 291 (1151)
|+.+++... +..+.+.+...+++.|+++ ||||||||||+.+...|... +||+||||||++.++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHH
Confidence 999998321 1224566789999999996 99999999998532234321 699999999999999
Q ss_pred ccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhh
Q 044085 292 SMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLNS 371 (1151)
Q Consensus 292 ~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~~ 371 (1151)
..++....+|++++|+++|||+||.+.+|+.. .++++.+++++|+++|+|+||||+++|+.|+.+ . .+|...+.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~ 353 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNN 353 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHH
Confidence 88764433799999999999999999987643 247788999999999999999999999999776 2 344455554
Q ss_pred hcccCCCChhhHHHHHHHhhcCCChhHHHHHh-----------hhccCCCCcccChHHHHHHHHHc--CCcccCCCCccH
Q 044085 372 KIWDLDEDKSGIMRALRVSYYYLPSHVKRCFA-----------HCSLLPKGYPFDERQIVLLWMAE--GLLQHKTDGIEM 438 (1151)
Q Consensus 372 ~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~~ 438 (1151)
..+... ...+.++|.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.....+.++
T Consensus 354 ~l~~~~--~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESRG--LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHHC--SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhccc--HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 444322 245888999999999999999999 999999999999 8999999 999875446678
Q ss_pred HHHHHHHHHHHHhCcccccccC-CCceeehhHHHHHHHhhhcCceee
Q 044085 439 EELGRKSFQVLHSRSFFQRSKI-DASWFLMHDLIHDLASWSSGEICS 484 (1151)
Q Consensus 439 ~~~~~~~~~~L~~~~l~~~~~~-~~~~~~~H~lv~~~a~~~~~~~~~ 484 (1151)
+++++ ||++|+++||+++... ...+|+|||+||+||++++.+++.
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 88888 9999999999998653 346799999999999999988775
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.9e-39 Score=406.38 Aligned_cols=568 Identities=16% Similarity=0.119 Sum_probs=317.6
Q ss_pred cccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccc-ccCc--cccCCCcccEEEccccccc-ccc
Q 044085 520 GLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWIL-QLPN--DIGELKHLRYLEFSRTAIE-VLP 595 (1151)
Q Consensus 520 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~--~i~~l~~Lr~L~Ls~n~i~-~lp 595 (1151)
.+..+++|+.+...... ....+..|..+++|++|+|++|.+. .+|. .++++++|++|+|++|.+. .+|
T Consensus 72 ~l~~L~~L~~l~~~~~~--------~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 143 (768)
T 3rgz_A 72 SLLSLTGLESLFLSNSH--------INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143 (768)
T ss_dssp HTTTCTTCCEEECTTSC--------EEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSS
T ss_pred hHhccCcccccCCcCCC--------cCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCC
Confidence 34556677766654332 1112346788899999999998876 4666 8889999999999998887 445
Q ss_pred hhh-hcCCCCcEEeccccccccccccc---cccCCccCeeecCCCCccccCcccccCccCCCccCeeEeccCCC-CCccc
Q 044085 596 ESV-STLYNLQTLILERCYRLKKLFPD---IGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNC-SGLRE 670 (1151)
Q Consensus 596 ~~i-~~L~~L~~L~L~~~~~l~~lp~~---~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~-~~l~~ 670 (1151)
..+ .++++|++|++++|......|.. +.++++|++|++++|.+.+..| ++.+++|++|++..+..... ..+..
T Consensus 144 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~ 221 (768)
T 3rgz_A 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGD 221 (768)
T ss_dssp CCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTT
T ss_pred HHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCccccc
Confidence 554 78899999999998544444444 7888999999999988655544 47888899888877765432 11222
Q ss_pred ccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeec
Q 044085 671 LRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGY 750 (1151)
Q Consensus 671 L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 750 (1151)
+++|. .+.+.+- ......+..+..+++|+.|+++.|..... ... ..+++|+.|++++|
T Consensus 222 l~~L~----~L~Ls~n----~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-------------~~~-~~l~~L~~L~L~~n 279 (768)
T 3rgz_A 222 CSALQ----HLDISGN----KLSGDFSRAISTCTELKLLNISSNQFVGP-------------IPP-LPLKSLQYLSLAEN 279 (768)
T ss_dssp CCSCC----EEECCSS----CCCSCHHHHTTTCSSCCEEECCSSCCEES-------------CCC-CCCTTCCEEECCSS
T ss_pred CCCCC----EEECcCC----cCCCcccHHHhcCCCCCEEECCCCcccCc-------------cCc-cccCCCCEEECcCC
Confidence 22222 2222211 11223455678889999999988865321 111 15778999999888
Q ss_pred CCC-CCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeecccc
Q 044085 751 GGA-KLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDM 828 (1151)
Q Consensus 751 ~~~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 828 (1151)
... .+|.++.. .+++|+.|+|++|.+.+.+| .++.+++|+.|++++|.....++....+ .+++|++|+++++
T Consensus 280 ~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-----~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 280 KFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-----KMRGLKVLDLSFN 353 (768)
T ss_dssp EEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-----TCTTCCEEECCSS
T ss_pred ccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-----cCCCCCEEeCcCC
Confidence 766 77877764 35889999999998876666 6888999999999988765566654221 2788888888754
Q ss_pred chhhhhhcccCCCCCcccccccCC-cccEEEeccCcCcccCCCCC-----CCCccEEEEccccCcc---ccCCCCCCcce
Q 044085 829 QELEEWISHAGTAGGDQEAAKGFH-SLRELSIINCSKLKGRLPQR-----FSSLERVVIRSCEQLL---VSYTALPPLCE 899 (1151)
Q Consensus 829 ~~l~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~c~~L~~~~p~~-----l~~L~~L~l~~~~~l~---~~~~~~~~L~~ 899 (1151)
. +.+..|..+..++ +|+.|++++ +++++.+|.. +++|+.|++.+|.... .....+++|+.
T Consensus 354 ~----------l~~~~p~~l~~l~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 354 E----------FSGELPESLTNLSASLLTLDLSS-NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp E----------EEECCCTTHHHHTTTCSEEECCS-SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred c----------cCccccHHHHhhhcCCcEEEccC-CCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 3 2223333444444 566666655 3444333322 3345555555544321 12233445555
Q ss_pred EEEcCC------------------------CCccccCCCCCcccccC-cccCCCCC-CCCccccCCCCCccEEEEeCCcc
Q 044085 900 LAIDGF------------------------WEVAWIRPEESRAEVLP-WEISIPDQ-ESLPDGLHKLSHITTISMYGSRL 953 (1151)
Q Consensus 900 L~l~~~------------------------~~l~~~~~~~~~l~~~~-~~~~~~~~-~~l~~~l~~l~~L~~L~ls~n~l 953 (1151)
|++++| .....++........+. ..++.+.+ +.+|..+.++++|+.|++++|.+
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCcc
Confidence 555444 22111111100000000 01111222 23445555555555555555555
Q ss_pred ccccCCCC--CCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCC-------------------------
Q 044085 954 VSFAEGGL--PSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEE------------------------- 1006 (1151)
Q Consensus 954 ~~~~~~~~--~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~------------------------- 1006 (1151)
+...+..+ .++|+.|+|++|.+.+.+|..+..+++|++|++++|++.+.+|..
T Consensus 503 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCS
T ss_pred CCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccc
Confidence 42221111 135555555555555555555555555555555555554443321
Q ss_pred ---------------------------------------------CCCCCCccEEEecCCCccccccccCCCCCCCcceE
Q 044085 1007 ---------------------------------------------VGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDL 1041 (1151)
Q Consensus 1007 ---------------------------------------------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 1041 (1151)
+..+++|+.|++++|.+++..+. .+.++++|+.|
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L 661 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFIL 661 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-GGGGCTTCCEE
T ss_pred ccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH-HHhccccCCEE
Confidence 12234555566666655544333 25556666666
Q ss_pred EeccCCCCcccccC---CCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCCCCcCCCCCCCCCcceEeeccCchH
Q 044085 1042 FIKDGLEDEVSFQK---LPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECPNLISLPKNGLPPSLVYVDIYSCPYL 1117 (1151)
Q Consensus 1042 ~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~L 1117 (1151)
++++|... ..+|. -.++|+.|+++++.--..+| .+.++++|++|+|++|+--..+|..+.+.++....+.|||.|
T Consensus 662 ~Ls~N~l~-g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 662 NLGHNDIS-GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp ECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred eCcCCccC-CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 66653221 11111 11356666666643222444 556666677777776654455665555555555555665543
Q ss_pred H----Hhhh-hcCcccccccccCeEE
Q 044085 1118 E----ERCK-VKGVYWHLVADIPYVR 1138 (1151)
Q Consensus 1118 ~----~~~~-~~g~~~~~i~~i~~~~ 1138 (1151)
- ..|. .++++|++|+|+|.++
T Consensus 741 cg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 741 CGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp ESTTSCCCCSCC--------------
T ss_pred cCCCCcCCCCCccCCCCCCCCccccC
Confidence 2 2688 9999999999999764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.7e-39 Score=383.12 Aligned_cols=286 Identities=17% Similarity=0.210 Sum_probs=232.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVIL 222 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~ 222 (1151)
..|||++++++|.++|...+ ..++|+|+||||+||||||+++|++.+++.+|+..++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34999999999999998643 3679999999999999999999998888899955699999999999988888888
Q ss_pred HHhc--C-C----CC-----CcchHHHHHHHHHHh---cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc
Q 044085 223 QAAV--G-S----VD-----VNDLNLLQLQLENQL---KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN 287 (1151)
Q Consensus 223 ~~~~--~-~----~~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 287 (1151)
+.+. . . .+ ..+.+.+...+++.| .+||+||||||||+ ...|+.+ + +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhh----C---CCeEEEEeccC
Confidence 7654 1 1 01 113455667777766 68999999999998 4677654 2 68999999999
Q ss_pred ccccccccCCCceeecC------CCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCC-
Q 044085 288 EDVSSMVTTPSAAYSLE------NLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKY- 360 (1151)
Q Consensus 288 ~~v~~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~- 360 (1151)
+.++..+.... .|.++ +|+++|||+||++.. +.. .. ++..+| |+|+||||+++|+.|+.+.
T Consensus 275 ~~Va~~l~g~~-vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 275 KQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLLKYL-DCR----PQ---DLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp SHHHHHHHHHS-SCEEEECSSSSCCCHHHHHHHHHHHH-CCC----TT---THHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred hHHHHhcCCCe-EEEecCccccCCcCHHHHHHHHHHHc-CCC----HH---HHHHHH---hCCCHHHHHHHHHHHhCCCC
Confidence 99886544332 56666 999999999999883 322 11 333444 9999999999999999874
Q ss_pred CHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCChhH-HHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCCccHH
Q 044085 361 DPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHV-KRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEME 439 (1151)
Q Consensus 361 ~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~ 439 (1151)
+.++|... ....+..+|.+||+.||++. |+||+|||+||+++.|+++.++.+|+++| +
T Consensus 343 s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------e 401 (1221)
T 1vt4_I 343 TWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------K 401 (1221)
T ss_dssp SHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------S
T ss_pred CHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------H
Confidence 57788753 13579999999999999999 99999999999999999999999999887 1
Q ss_pred HHHHHHHHHHHhCcccccccCCCceeehhHHHHHHHh
Q 044085 440 ELGRKSFQVLHSRSFFQRSKIDASWFLMHDLIHDLAS 476 (1151)
Q Consensus 440 ~~~~~~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~a~ 476 (1151)
+.++.++++|+++||++... ...+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 34888999999999999853 4578999999999763
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.6e-36 Score=403.82 Aligned_cols=312 Identities=21% Similarity=0.266 Sum_probs=249.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh-hccCCCceEEEEeCCCCC--HHH
Q 044085 140 DEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV-EEHFPDFRAWAYVSEDFD--AVG 216 (1151)
Q Consensus 140 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~~wv~vs~~~~--~~~ 216 (1151)
....||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+|++.++||++++..+ ...
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 34679999999999999997653 36789999999999999999999997654 566878899999998544 344
Q ss_pred HHHHHHHHhcCC-----CCCcchHHHHHHHHHHhcCC--ceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc
Q 044085 217 ITKVILQAAVGS-----VDVNDLNLLQLQLENQLKNK--KFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED 289 (1151)
Q Consensus 217 ~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 289 (1151)
.+..++..+... ....+.+.+...++..+.++ ||||||||||+. ..|..+ .+||+||||||++.
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHH
Confidence 466677776622 22456788889999999877 999999999863 455443 47899999999999
Q ss_pred ccccccCCCceeecCC-CChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHH
Q 044085 290 VSSMVTTPSAAYSLEN-LLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDV 368 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~ 368 (1151)
++..+......+.+++ |+++|||+||...++... +.+.+++++|+++|+|+||||+.+|++|+.+. ..|...
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~ 341 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYY 341 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHH
Confidence 9865443333899996 999999999999884322 23346799999999999999999999998864 467776
Q ss_pred HhhhcccC--------CCChhhHHHHHHHhhcCCChhHHHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCCccHHH
Q 044085 369 LNSKIWDL--------DEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEMEE 440 (1151)
Q Consensus 369 ~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~ 440 (1151)
+....... ......+..+|.+||+.||++.|.||+|||+||+++.|+++.++.+|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~ 409 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TE 409 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HH
Confidence 65532211 11225699999999999999999999999999999999999999999653 36
Q ss_pred HHHHHHHHHHhCcccccccC-CCceeehhHHHHHHHhhhcCcee
Q 044085 441 LGRKSFQVLHSRSFFQRSKI-DASWFLMHDLIHDLASWSSGEIC 483 (1151)
Q Consensus 441 ~~~~~~~~L~~~~l~~~~~~-~~~~~~~H~lv~~~a~~~~~~~~ 483 (1151)
.++.++++|+++||++.... ...+|+||++||++|+..+.++.
T Consensus 410 ~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 410 EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 68999999999999997643 23469999999999999877653
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-35 Score=366.02 Aligned_cols=552 Identities=17% Similarity=0.126 Sum_probs=325.5
Q ss_pred CCCceeeEEEEecccCcccccccccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccCc-ccc
Q 044085 498 FSRNLRHLSYLCSRFDGIKRFEGLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLPN-DIG 576 (1151)
Q Consensus 498 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~ 576 (1151)
++..++++.+..+...... ...+.++++|++|.+..... ....+..|.++++|++|+|++|.++.+|. .|+
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFNTI-------SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp SCTTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSSCC-------CCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCCcc-------CccCHHHHhcccCcCEEECCCCccCccChhhhc
Confidence 3445666665544332211 12245566667666654321 22334556666777777777777776664 467
Q ss_pred CCCcccEEEcccccccccc-hhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCccccc--CccCCC
Q 044085 577 ELKHLRYLEFSRTAIEVLP-ESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIG--KLTSLR 653 (1151)
Q Consensus 577 ~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~--~L~~L~ 653 (1151)
++++|++|+|++|.++.+| ..|+++++|++|++++|......|..+.++++|++|++++|.+.+..+..++ .+++|+
T Consensus 95 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp TCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred cCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 7777777777777776664 4567777777777777633333444566677777777777664433333332 345666
Q ss_pred ccCeeEeccCCCC--CcccccccccccCcEEEeCccCCCCHh---HHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHH
Q 044085 654 TLAKFAVGKSNCS--GLRELRSLTLLQDKLTISGLENVNDAE---DAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEI 728 (1151)
Q Consensus 654 ~L~~~~~~~~~~~--~l~~L~~L~~l~~~l~~~~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 728 (1151)
.|++..+...... .+..+..|.. +.+ ....... ......+ ..++|+.|+++++.....
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l~~L~~----L~l---~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~--------- 237 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAIGRLFG----LFL---NNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTT--------- 237 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGSSEECE----EEC---TTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEE---------
T ss_pred EEECCCCcccccChhhhhhhhhhhh----hhc---cccccChhhHHHHHHHh-hhccccEEEccCCccccc---------
Confidence 6655544332211 1112222111 111 1111000 0011111 235566666655543210
Q ss_pred HHhHhhccCCC--CCcceEEEeecCCCCCCc-ccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEe
Q 044085 729 QTRVLEMLKPH--YGLKELKVQGYGGAKLPT-WLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSV 804 (1151)
Q Consensus 729 ~~~~l~~l~~~--~~L~~L~l~~~~~~~~p~-~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~ 804 (1151)
....+..+ ++|+.|++++|....++. ++. .+++|+.|++++|.+....+ .++.+++|+.|++++|.....+
T Consensus 238 ---~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 312 (680)
T 1ziw_A 238 ---SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFA--WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312 (680)
T ss_dssp ---CTTTTGGGGGSCCCEEECTTSCCCEECTTTTT--TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC--
T ss_pred ---ChhHhhccCcCCCCEEECCCCCcCccCccccc--CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccc
Confidence 00111111 346666666665554432 332 35666666666666655444 5666666666666654321111
Q ss_pred Cccc---cCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCccc-CCCC-C-----CC
Q 044085 805 GLEF---CGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKG-RLPQ-R-----FS 874 (1151)
Q Consensus 805 ~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-~~p~-~-----l~ 874 (1151)
+... ........+++|++|+++ .+.+.+..+..+..+++|++|++++| .+.. .++. . .+
T Consensus 313 ~~~~lp~i~~~~~~~l~~L~~L~l~----------~n~l~~~~~~~~~~l~~L~~L~Ls~n-~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 313 SLASLPKIDDFSFQWLKCLEHLNME----------DNDIPGIKSNMFTGLINLKYLSLSNS-FTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ----CCEECTTTTTTCTTCCEEECC----------SCCBCCCCTTTTTTCTTCCEEECTTC-BSCCCEECTTTTGGGTTS
T ss_pred ccccccccChhhcccCCCCCEEECC----------CCccCCCChhHhccccCCcEEECCCC-chhhhhcchhhhcccccC
Confidence 0000 000011224555555554 33333344445566677777777663 2211 1121 1 14
Q ss_pred CccEEEEccccCccc---cCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCc-cccCCCCCccEEEEeC
Q 044085 875 SLERVVIRSCEQLLV---SYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLP-DGLHKLSHITTISMYG 950 (1151)
Q Consensus 875 ~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~-~~l~~l~~L~~L~ls~ 950 (1151)
+|+.|++.++....+ .+..+++|+.|+++++... +.+| ..+.++++|++|++++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----------------------~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG----------------------QELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE----------------------EECCSGGGTTCTTCCEEECCS
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc----------------------cccCcccccCcccccEEecCC
Confidence 566666666654433 2334566666666665321 1233 4677899999999999
Q ss_pred CccccccCCCCC--CCccEEEEcCCCCc--ccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCcccc
Q 044085 951 SRLVSFAEGGLP--SNLCSLTLFGCRYL--TALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKL 1026 (1151)
Q Consensus 951 n~l~~~~~~~~~--~~L~~L~L~~n~~~--~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 1026 (1151)
|.+..++...+. ++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+
T Consensus 440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGG
T ss_pred CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcccc
Confidence 999887766553 69999999999876 46788899999999999999999877777789999999999999998865
Q ss_pred ccc-------cCCCCCCCcceEEeccCCCCcccccC--C--CCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCC
Q 044085 1027 FFD-------LGFHNLTSVRDLFIKDGLEDEVSFQK--L--PNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPN 1093 (1151)
Q Consensus 1027 ~~~-------~~~~~l~~L~~L~l~~~~~~~~~~~~--~--~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~ 1093 (1151)
... ..+.++++|+.|++++|... .++. + .++|+.|++++ ++++.++ .+.++++|+.|++++| .
T Consensus 520 ~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~ 595 (680)
T 1ziw_A 520 WKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-L 595 (680)
T ss_dssp GSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-C
T ss_pred chhhccCCcchhhcCCCCCCEEECCCCCCC--CCCHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-c
Confidence 321 13788999999999986443 3332 2 25899999987 5788887 5789999999999999 7
Q ss_pred CCcCCCCC---CCCCcceEeeccCch
Q 044085 1094 LISLPKNG---LPPSLVYVDIYSCPY 1116 (1151)
Q Consensus 1094 l~~l~~~~---~~~sL~~L~i~~c~~ 1116 (1151)
++.++... ..++|+.|++++||-
T Consensus 596 l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 596 ITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred CCccChhHhcccccccCEEEccCCCc
Confidence 88877642 347899999999764
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-35 Score=364.60 Aligned_cols=529 Identities=17% Similarity=0.141 Sum_probs=385.8
Q ss_pred CCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccccc-CccccCCCcccEEEcccccccccch-hhhcCC
Q 044085 525 EYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQL-PNDIGELKHLRYLEFSRTAIEVLPE-SVSTLY 602 (1151)
Q Consensus 525 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~ 602 (1151)
+++++|.+.++.. ...++..|.++++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|. .|.+++
T Consensus 25 ~~l~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLTHNQL-------RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCT 97 (680)
T ss_dssp TTCSEEECCSSCC-------CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCcEEECCCCCC-------CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCC
Confidence 5788888876531 334556789999999999999999887 5778999999999999999999987 599999
Q ss_pred CCcEEeccccccccccc-cccccCCccCeeecCCCCccccCcccccCccCCCccCeeEeccCCCC-------Cccccccc
Q 044085 603 NLQTLILERCYRLKKLF-PDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCS-------GLRELRSL 674 (1151)
Q Consensus 603 ~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~-------~l~~L~~L 674 (1151)
+|++|++++| .+..+| ..|.++++|++|++++|.+.+..|..++++++|++|++..+...... ....|+.|
T Consensus 98 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 98 NLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp TCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 9999999999 566666 56999999999999999977777778999999999988776544321 11233333
Q ss_pred ccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCC
Q 044085 675 TLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAK 754 (1151)
Q Consensus 675 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~ 754 (1151)
....+.+. ...+..+..+.+|+.|.+..+... ..........+ ..+.|+.|+++++....
T Consensus 177 ~L~~n~l~-----------~~~~~~~~~l~~L~~L~l~~~~l~--------~~~~~~~~~~l-~~~~L~~L~L~~n~l~~ 236 (680)
T 1ziw_A 177 ELSSNQIK-----------EFSPGCFHAIGRLFGLFLNNVQLG--------PSLTEKLCLEL-ANTSIRNLSLSNSQLST 236 (680)
T ss_dssp ECTTCCCC-----------CBCTTGGGGSSEECEEECTTCCCH--------HHHHHHHHHHH-TTSCCCEEECTTSCCCE
T ss_pred ECCCCccc-----------ccChhhhhhhhhhhhhhccccccC--------hhhHHHHHHHh-hhccccEEEccCCcccc
Confidence 33332221 111233556677777776554431 01111111111 34789999999988765
Q ss_pred C-CcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhh
Q 044085 755 L-PTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELE 832 (1151)
Q Consensus 755 ~-p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 832 (1151)
. |.++.....++|+.|++++|.+....+ .++.+++|+.|++++|......+..+.+ +++|+.|++.+...-.
T Consensus 237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG------LFNVRYLNLKRSFTKQ 310 (680)
T ss_dssp ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT------CTTCCEEECTTCBCCC
T ss_pred cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC------CCCccEEeccchhhhc
Confidence 5 444443122459999999999876665 6899999999999999766555544433 8999999997532110
Q ss_pred hhhcccCCCCCcccccccCCcccEEEeccCcCcccCCC---CCCCCccEEEEccccCc--cccCC-----CCCCcceEEE
Q 044085 833 EWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLP---QRFSSLERVVIRSCEQL--LVSYT-----ALPPLCELAI 902 (1151)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p---~~l~~L~~L~l~~~~~l--~~~~~-----~~~~L~~L~l 902 (1151)
.+. ...+.......+..+++|++|++++ +.+++..+ ..+++|+.|++.++... .+... ..++|+.|++
T Consensus 311 ~~~-~~~lp~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 311 SIS-LASLPKIDDFSFQWLKCLEHLNMED-NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp -------CCEECTTTTTTCTTCCEEECCS-CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred ccc-cccccccChhhcccCCCCCEEECCC-CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 000 0011111112566899999999999 67775444 35678999999877521 11111 1257888888
Q ss_pred cCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCcccc-ccCCCC--CCCccEEEEcCCCCcccC
Q 044085 903 DGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVS-FAEGGL--PSNLCSLTLFGCRYLTAL 979 (1151)
Q Consensus 903 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~-~~~~~~--~~~L~~L~L~~n~~~~~l 979 (1151)
+++... ...|..+.++++|+.|++++|.+.. ++...+ .++|+.|++++|.+.+..
T Consensus 389 ~~n~l~----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 389 TKNKIS----------------------KIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp TTSCCC----------------------EECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred CCCCCC----------------------eEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 776421 2235667889999999999999964 443333 269999999999988877
Q ss_pred ccccCCCCccceeeecCCCCC--ccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcc---ccc
Q 044085 980 PNGIYNLSSLQHLEIRACPRI--ASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEV---SFQ 1054 (1151)
Q Consensus 980 ~~~l~~l~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~ 1054 (1151)
+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.++++++. .+.++++|+.|++++|..... .++
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD-MLEGLEKLEILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTST
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh-hhccccccCEEeCCCCCccccchhhcc
Confidence 888999999999999999876 56788899999999999999999987765 488999999999999654322 111
Q ss_pred -------CCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCcCCCCC--CCCCcceEeeccC
Q 044085 1055 -------KLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLISLPKNG--LPPSLVYVDIYSC 1114 (1151)
Q Consensus 1055 -------~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~i~~c 1114 (1151)
.-.++|+.|+++++ .++.++ .+.++++|+.|++++| +++.+|... ..++|+.|++++|
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 12258999999985 788888 5899999999999998 788888763 3589999999998
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.5e-37 Score=382.33 Aligned_cols=251 Identities=15% Similarity=0.120 Sum_probs=162.5
Q ss_pred cccccccCCcccEEEeccCcCcccCCCC---CCCCccEEEEccccCccc---cCCCCCCcceEEEcCCCCccccCCCCCc
Q 044085 844 DQEAAKGFHSLRELSIINCSKLKGRLPQ---RFSSLERVVIRSCEQLLV---SYTALPPLCELAIDGFWEVAWIRPEESR 917 (1151)
Q Consensus 844 ~~~~~~~l~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~~~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 917 (1151)
.|..+..+++|+.|++++ +.+++.+|. .+++|+.|++.+|..... ....+++|+.|++++|.....++.....
T Consensus 410 ~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSF-NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp CCGGGGGCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cCHHHhcCCCCCEEECcC-CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 344444555555555555 344444442 234455555554443211 1223445555555554322222111111
Q ss_pred ccccC-cccCCCCC-CCCccccCCCCCccEEEEeCCccccccCCCC--CCCccEEEEcCCCCcccCccc-----------
Q 044085 918 AEVLP-WEISIPDQ-ESLPDGLHKLSHITTISMYGSRLVSFAEGGL--PSNLCSLTLFGCRYLTALPNG----------- 982 (1151)
Q Consensus 918 l~~~~-~~~~~~~~-~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~--~~~L~~L~L~~n~~~~~l~~~----------- 982 (1151)
+..+. ..++.+.+ +.+|..+.++++|+.|++++|.++...+..+ .++|+.|++++|.+.+.+|..
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 11110 11112222 4678889999999999999999974333323 269999999999987666543
Q ss_pred -----------------------------------------------------------cCCCCccceeeecCCCCCccC
Q 044085 983 -----------------------------------------------------------IYNLSSLQHLEIRACPRIASI 1003 (1151)
Q Consensus 983 -----------------------------------------------------------l~~l~~L~~L~L~~~~~~~~~ 1003 (1151)
+..+++|+.|++++|.+.+.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 334678999999999999999
Q ss_pred CCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccC---CCCCcceEEecCCCCCCcCCCCCCC
Q 044085 1004 PEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK---LPNSLVKLNIREFPGLESLSFVRNL 1080 (1151)
Q Consensus 1004 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~~l~~l 1080 (1151)
|..++.+++|+.|+|++|.+++..+. .+.++++|+.|++++|... ..+|. -.++|+.|++++++--..+|....+
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred CHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECcCCcccccCCCchhh
Confidence 99999999999999999999976665 4889999999999995432 22222 2357999999997544567755666
Q ss_pred CCCCeeeEeCCCCCCcC
Q 044085 1081 TSLERLTLCECPNLISL 1097 (1151)
Q Consensus 1081 ~~L~~L~l~~c~~l~~l 1097 (1151)
.++....+.+||.+.-.
T Consensus 727 ~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 727 ETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GGSCGGGGCSCTEEEST
T ss_pred ccCCHHHhcCCchhcCC
Confidence 77777788888877643
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.8e-35 Score=357.14 Aligned_cols=507 Identities=16% Similarity=0.104 Sum_probs=286.2
Q ss_pred CCCceeeEEEEecccCcccccccccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccccc-Ccccc
Q 044085 498 FSRNLRHLSYLCSRFDGIKRFEGLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQL-PNDIG 576 (1151)
Q Consensus 498 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~ 576 (1151)
++..++++.+..+...... ...+.++++|++|.+..+.. ....+..|.++++|++|+|++|.++.+ |..|+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-------~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 101 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEI-------ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101 (606)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCC-------CEECTTTTTTCTTCCEEECTTCCCCCCCTTSST
T ss_pred CCCCcCEEECCCCCcCEeC-hhhccCCccCcEEeCCCCcc-------cccCHHHhhchhhcCEeECCCCcccccChhhcC
Confidence 4455666665544332211 12355677777777665431 233455677777777777777777766 56777
Q ss_pred CCCcccEEEcccccccccc-hhhhcCCCCcEEecccccccc--ccccccccCCccCeeecCCCCccccCcccccCccCCC
Q 044085 577 ELKHLRYLEFSRTAIEVLP-ESVSTLYNLQTLILERCYRLK--KLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLR 653 (1151)
Q Consensus 577 ~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 653 (1151)
++++|++|+|++|.++.+| ..++++++|++|++++| .+. .+|..++++++|++|++++|.+.+..|..++.+++|+
T Consensus 102 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3vq2_A 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP 180 (606)
T ss_dssp TCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred CcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence 7777777777777777665 55777777777777777 343 4677777777777777777776555556666666665
Q ss_pred ----ccCeeEeccCCCC-CcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHH
Q 044085 654 ----TLAKFAVGKSNCS-GLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEI 728 (1151)
Q Consensus 654 ----~L~~~~~~~~~~~-~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 728 (1151)
+|++..+...... ..-... .+....+.............+.+++.|+.+.+..+...........
T Consensus 181 ~~l~~L~l~~n~l~~~~~~~~~~~-------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~--- 250 (606)
T 3vq2_A 181 QVNLSLDMSLNPIDFIQDQAFQGI-------KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF--- 250 (606)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTC-------EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC---
T ss_pred cccceeeccCCCcceeCcccccCc-------eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc---
Confidence 3443333222110 000000 1111122222222345556677777777777776554321111100
Q ss_pred HHhHhhccCCCCCcceEEEe-ecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCcc
Q 044085 729 QTRVLEMLKPHYGLKELKVQ-GYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLE 807 (1151)
Q Consensus 729 ~~~~l~~l~~~~~L~~L~l~-~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 807 (1151)
....+..+... .++.+.+. .+........+. .+++|+.|++++|.+ ..+|.+..+++|+.|++++|.. ..++ .
T Consensus 251 ~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~-~~l~~l~~~~~L~~L~l~~n~l-~~lp-~ 324 (606)
T 3vq2_A 251 EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVKFH--CLANVSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQL-KQFP-T 324 (606)
T ss_dssp CGGGGTTGGGS-EEEEEEECCCTTCCGGGGSCG--GGTTCSEEEEESCCC-CCCCCCCTTCCCSEEEEESCCC-SSCC-C
T ss_pred ChHHhhhhhhc-cHhheeccccccccccccccc--cCCCCCEEEecCccc-hhhhhccccccCCEEEcccccC-cccc-c
Confidence 00111111111 34444442 222222111222 467777777777776 4455677777777777777764 4444 2
Q ss_pred ccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccC--CCCCCCCccEEEEcccc
Q 044085 808 FCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGR--LPQRFSSLERVVIRSCE 885 (1151)
Q Consensus 808 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~--~p~~l~~L~~L~l~~~~ 885 (1151)
+ .+++|++|++.++.... +..+..+++|+.|++++ +.+++. +|.
T Consensus 325 ~-------~l~~L~~L~l~~n~~~~------------~~~~~~l~~L~~L~ls~-n~l~~~~~~~~-------------- 370 (606)
T 3vq2_A 325 L-------DLPFLKSLTLTMNKGSI------------SFKKVALPSLSYLDLSR-NALSFSGCCSY-------------- 370 (606)
T ss_dssp C-------CCSSCCEEEEESCSSCE------------ECCCCCCTTCCEEECCS-SCEEEEEECCH--------------
T ss_pred C-------CCCccceeeccCCcCcc------------chhhccCCCCCEEECcC-CccCCCcchhh--------------
Confidence 1 26777777776543211 11334678888888888 455532 121
Q ss_pred CccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccC-CCC--C
Q 044085 886 QLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAE-GGL--P 962 (1151)
Q Consensus 886 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~-~~~--~ 962 (1151)
....+++|+.|+++++. +..+|..+.++++|+.|++++|.+...+. ..+ .
T Consensus 371 ----~~~~~~~L~~L~L~~n~-----------------------l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 371 ----SDLGTNSLRHLDLSFNG-----------------------AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp ----HHHCCSCCCEEECCSCS-----------------------EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred ----hhccCCcccEeECCCCc-----------------------cccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 11122333333333332 11233445567777777777777766544 222 2
Q ss_pred CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCc-cCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceE
Q 044085 963 SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIA-SIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDL 1041 (1151)
Q Consensus 963 ~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 1041 (1151)
++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..+. .+.++++|+.|
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 502 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLL 502 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-hhcccccCCEE
Confidence 577777777777777666677777777777777777766 3566677777777777777777665543 36667777777
Q ss_pred EeccCCCCcccccCCCCCcceEEecCCCCCCcC-C-CCCCCCCCCeeeEeCCCCCCcCCCC--CCCCCcceEeeccCc
Q 044085 1042 FIKDGLEDEVSFQKLPNSLVKLNIREFPGLESL-S-FVRNLTSLERLTLCECPNLISLPKN--GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1042 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~sL~~L~i~~c~ 1115 (1151)
++++| .++.+ | .+.++++|++|+|++| .+..+|.. .++++|+.|++++||
T Consensus 503 ~Ls~N-----------------------~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 503 NMSHN-----------------------NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ECCSS-----------------------CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred ECCCC-----------------------cCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 77762 23333 1 4556666666666666 46666654 233456666666654
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.3e-34 Score=349.07 Aligned_cols=467 Identities=14% Similarity=0.090 Sum_probs=260.1
Q ss_pred hhhhcCCCCcccEEEecCcccccc-CccccCCCcccEEEccccccccc-chhhhcCCCCcEEecccccccccc-cccccc
Q 044085 548 VFHVIPRLRRLRVLSLCGYWILQL-PNDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKL-FPDIGN 624 (1151)
Q Consensus 548 ~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~~~~ 624 (1151)
.+..|.++++|++|+|++|.+..+ |..|.++++|++|+|++|.++.+ |..|+++++|++|++++| .+..+ |..+.+
T Consensus 49 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~ 127 (606)
T 3t6q_A 49 QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHN 127 (606)
T ss_dssp CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTT
T ss_pred ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhcc
Confidence 344556666666666666665554 45566666666666666666544 445666666666666666 34443 444666
Q ss_pred CCccCeeecCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCC
Q 044085 625 LTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKE 704 (1151)
Q Consensus 625 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 704 (1151)
+++|++|++++|.+.+..+..+..+++|++|++..+... ......+..++
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------------~~~~~~~~~l~ 177 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH------------------------------YLSKEDMSSLQ 177 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC------------------------------EECHHHHHTTT
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCccc------------------------------ccChhhhhhhc
Confidence 666666666666643311122233555555544333211 00112344556
Q ss_pred CcC--ceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecC--------------------------CCCCC
Q 044085 705 KLE--ALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYG--------------------------GAKLP 756 (1151)
Q Consensus 705 ~L~--~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~--------------------------~~~~p 756 (1151)
+|+ .|+++.|..... .........|+.|++.++. ...++
T Consensus 178 ~L~~l~L~l~~n~l~~~-------------~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGI-------------EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp TCCSEEEECTTCCCCEE-------------CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred ccceeEEecCCCccCcc-------------ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 677 455555544220 0111112345555554432 00111
Q ss_pred cccCC-CCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhh
Q 044085 757 TWLGQ-SSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEW 834 (1151)
Q Consensus 757 ~~~~~-~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 834 (1151)
..... ..-.+|+.|++++|.+....+ .++.+++|+.|++++|. +..+|..+. .+++|++|++.+
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~------~l~~L~~L~l~~------- 310 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV------GLSTLKKLVLSA------- 310 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCC------SCTTCCEEECTT-------
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhc------ccccCCEEECcc-------
Confidence 11110 001267777777777755444 47777778888777775 334444332 266777777763
Q ss_pred hcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCC
Q 044085 835 ISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPE 914 (1151)
Q Consensus 835 ~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 914 (1151)
+.+....+..+..+++|+.|++++| .+.+.+|.. ....+++|+.|+++++....
T Consensus 311 ---n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~-----------------~~~~l~~L~~L~l~~n~l~~----- 364 (606)
T 3t6q_A 311 ---NKFENLCQISASNFPSLTHLSIKGN-TKRLELGTG-----------------CLENLENLRELDLSHDDIET----- 364 (606)
T ss_dssp ---CCCSBGGGGCGGGCTTCSEEECCSC-SSCCBCCSS-----------------TTTTCTTCCEEECCSSCCCE-----
T ss_pred ---CCcCcCchhhhhccCcCCEEECCCC-Ccccccchh-----------------hhhccCcCCEEECCCCcccc-----
Confidence 3333334455667777777777773 444333321 12223444444444432110
Q ss_pred CCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCcc-ccCCCCccce
Q 044085 915 ESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPN-GIYNLSSLQH 991 (1151)
Q Consensus 915 ~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~-~l~~l~~L~~ 991 (1151)
....+..+.++++|++|++++|.+..++...+. ++|+.|++++|.+.+..|. .+..+++|++
T Consensus 365 ---------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 365 ---------------SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp ---------------EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred ---------------ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 011133455667777777777777665544432 5677777777776655443 3667777777
Q ss_pred eeecCCCCCccCCCCCCCCCCccEEEecCCCccccc--cccCCCCCCCcceEEeccCCCCcccccC--CCCCcceEEecC
Q 044085 992 LEIRACPRIASIPEEVGFPPNITELHIEGPNICKLF--FDLGFHNLTSVRDLFIKDGLEDEVSFQK--LPNSLVKLNIRE 1067 (1151)
Q Consensus 992 L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~ 1067 (1151)
|++++|.+.+..|..+..+++|++|++++|.+++.. ....+..+++|+.|++++|......... -.++|+.|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 777777776666666677777777777777765421 1123566777777777775332211111 124677777777
Q ss_pred CCCCCcCC--CCCCCCCCCeeeEeCCCCCCcCCCCC--CCCCcceEeeccCch
Q 044085 1068 FPGLESLS--FVRNLTSLERLTLCECPNLISLPKNG--LPPSLVYVDIYSCPY 1116 (1151)
Q Consensus 1068 c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~~--~~~sL~~L~i~~c~~ 1116 (1151)
+ .++.++ .+.++++| .|++++| .+..++... ..++|+.|++++||-
T Consensus 510 N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 510 N-RLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp S-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred C-ccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCc
Confidence 5 455443 77889999 9999999 677766542 347899999999874
No 10
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=343.00 Aligned_cols=304 Identities=24% Similarity=0.324 Sum_probs=236.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh-hccCCCceEEEEeCCCCCHHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV-EEHFPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
.+.+|||+.++++|.++|.... .+.++|+|+||||+||||||++++++.++ ..+|++.++|+++++. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 4679999999999999997643 35689999999999999999999998766 7889778999999875 4444444
Q ss_pred HHH---HHhcC-----CCCCcchHHHHHHHHHHhcC--CceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc
Q 044085 220 VIL---QAAVG-----SVDVNDLNLLQLQLENQLKN--KKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED 289 (1151)
Q Consensus 220 ~i~---~~~~~-----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~ 289 (1151)
.+. ..+.. .....+.+.....++..+.+ +++||||||||+. ..++. + .+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCCcH
Confidence 443 33331 12345667778888888876 7999999999863 33332 2 46899999999998
Q ss_pred ccccccCCCceeec---CCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHH
Q 044085 290 VSSMVTTPSAAYSL---ENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWE 366 (1151)
Q Consensus 290 v~~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~ 366 (1151)
++..+... .+.+ ++|+++|+++||...++... +...+.+.+|+++|+|+||||+.+|+.|+... ..|.
T Consensus 269 ~~~~~~~~--~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~ 339 (591)
T 1z6t_A 269 VTDSVMGP--KYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWE 339 (591)
T ss_dssp GGTTCCSC--EEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHH
T ss_pred HHHhcCCC--ceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHH
Confidence 87765432 3444 58999999999999885421 12236789999999999999999999998763 4687
Q ss_pred HHHhhhcccC--------CCChhhHHHHHHHhhcCCChhHHHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCCccH
Q 044085 367 DVLNSKIWDL--------DEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDGIEM 438 (1151)
Q Consensus 367 ~~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~ 438 (1151)
..+....... ......+..++..||+.||++.|.||++||+||+|+.|+.+.+...|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------ 407 (591)
T 1z6t_A 340 YYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------ 407 (591)
T ss_dssp HHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------
Confidence 7766533211 11235799999999999999999999999999999999999999999542
Q ss_pred HHHHHHHHHHHHhCcccccccC-CCceeehhHHHHHHHhhhc
Q 044085 439 EELGRKSFQVLHSRSFFQRSKI-DASWFLMHDLIHDLASWSS 479 (1151)
Q Consensus 439 ~~~~~~~~~~L~~~~l~~~~~~-~~~~~~~H~lv~~~a~~~~ 479 (1151)
.+.++.++++|+++||++.... ....|.||+++|++++...
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 2457889999999999986532 3357999999999998763
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.3e-33 Score=344.11 Aligned_cols=505 Identities=15% Similarity=0.135 Sum_probs=326.7
Q ss_pred CCCCceeeEEEEecccCcccccccccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccccc-Cccc
Q 044085 497 RFSRNLRHLSYLCSRFDGIKRFEGLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQL-PNDI 575 (1151)
Q Consensus 497 ~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i 575 (1151)
.++..++++.+..+...... ...+.++++|++|.+..+.. ....+..|..+++|++|+|++|.+..+ |..|
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQI-------YWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp TSCTTCCEEECTTCCCSEEC-TTTSTTCTTCSEEECTTCCC-------CEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred CCCCcCcEEEccCCccCcCC-hhHhccCccceEEECCCCcc-------ceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 45667888887665443321 23567889999999886541 344567799999999999999999877 6889
Q ss_pred cCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccc-cccccCCccCeeecCCCCccccCcccccCccCCC
Q 044085 576 GELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLF-PDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLR 653 (1151)
Q Consensus 576 ~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 653 (1151)
+++++|++|+|++|.++.+ |..+.++++|++|++++| .+..++ ..+..+++|++|++++|.+....|..++.+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 9999999999999999988 677999999999999999 566542 4455699999999999997666677789999998
Q ss_pred --ccCeeEeccCCC----CCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhH
Q 044085 654 --TLAKFAVGKSNC----SGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAE 727 (1151)
Q Consensus 654 --~L~~~~~~~~~~----~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 727 (1151)
+|++..+..... .....++.|. +...... ...+.++.++....+.......... . .
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~----------l~~~~~~----~~~~~~l~~~~l~~l~~~~~~~~~~-~---~ 242 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLN----------FGGTQNL----LVIFKGLKNSTIQSLWLGTFEDMDD-E---D 242 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEE----------CTTCSCH----HHHHHHTTTCEEEEEECCCCTTSCC-C---C
T ss_pred eeEEecCCCccCccChhHhhhccccccc----------cCCchhH----HHHhhhccccchhheechhhccccc-c---c
Confidence 555444433221 1111222222 2222211 1122233333333333322211000 0 0
Q ss_pred HHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCcc
Q 044085 728 IQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLE 807 (1151)
Q Consensus 728 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~ 807 (1151)
.....+..+.+. +|+.|++.++....++..... .+++|+.|++++|.+....+.++.+++|+.|++++|......+..
T Consensus 243 i~~~~~~~l~~~-~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~ 320 (606)
T 3t6q_A 243 ISPAVFEGLCEM-SVESINLQKHYFFNISSNTFH-CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS 320 (606)
T ss_dssp CCGGGGGGGGGS-EEEEEECTTCCCSSCCTTTTT-TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC
T ss_pred cChhHhchhhcC-ceeEEEeecCccCccCHHHhc-cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh
Confidence 011222222222 688999999888888775432 588999999999988643337888999999999998654433333
Q ss_pred ccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCc-ccccccCCcccEEEeccCcCcccCC--C---CCCCCccEEEE
Q 044085 808 FCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGD-QEAAKGFHSLRELSIINCSKLKGRL--P---QRFSSLERVVI 881 (1151)
Q Consensus 808 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~L~~~~--p---~~l~~L~~L~l 881 (1151)
+. .+++|++|++.++. +.... +..+..+++|++|++++ +.+++.. + ..+++|+.|++
T Consensus 321 ~~------~l~~L~~L~l~~n~----------~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 321 AS------NFPSLTHLSIKGNT----------KRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp GG------GCTTCSEEECCSCS----------SCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEEC
T ss_pred hh------ccCcCCEEECCCCC----------cccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEEC
Confidence 33 28889999887532 22222 23466889999999999 5665332 3 35677888888
Q ss_pred ccccCccc---cCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccC
Q 044085 882 RSCEQLLV---SYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAE 958 (1151)
Q Consensus 882 ~~~~~l~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~ 958 (1151)
.++..... .+..+++|+.|+++++.... ...+..+.++++|+.|++++|.+...+.
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKV---------------------KDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEEC---------------------CTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCC---------------------cccchhhhCcccCCEEECCCCccCCcCH
Confidence 77764433 23345666666666653211 0112235566777777777777765544
Q ss_pred CCC--CCCccEEEEcCCCCccc---CccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCC
Q 044085 959 GGL--PSNLCSLTLFGCRYLTA---LPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFH 1033 (1151)
Q Consensus 959 ~~~--~~~L~~L~L~~n~~~~~---l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 1033 (1151)
..+ .++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..+. .+.
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~ 521 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE-ALS 521 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGG-GGT
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChh-HhC
Confidence 433 25677777777776552 124466677777777777777666666667777777777777776665543 366
Q ss_pred CCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCC
Q 044085 1034 NLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPN 1093 (1151)
Q Consensus 1034 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~ 1093 (1151)
++++| .|++++ +.++.++ .+..+++|+.|++++||-
T Consensus 522 ~l~~L-~L~L~~-----------------------N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 522 HLKGI-YLNLAS-----------------------NHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp TCCSC-EEECCS-----------------------SCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred ccccc-EEECcC-----------------------CcccccCHhhcccCCCCCEEeCCCCCc
Confidence 66666 666666 3444444 456778999999999863
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.7e-32 Score=343.02 Aligned_cols=484 Identities=15% Similarity=0.107 Sum_probs=254.6
Q ss_pred CCCceeeEEEEecccCcccccccccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccccc-Ccccc
Q 044085 498 FSRNLRHLSYLCSRFDGIKRFEGLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQL-PNDIG 576 (1151)
Q Consensus 498 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~ 576 (1151)
.+..++++.+..+..... ....+.++++|++|.+..+. ....+.+..|.++++|++|+|++|.+..+ |..|+
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 455667776665433221 12345567777777766542 11233355677777777777777777665 56777
Q ss_pred CCCcccEEEcccccccc-cchh--hhcCCCCcEEeccccccccccc--cccccCCccCeeecCCCCccccCcccccCc--
Q 044085 577 ELKHLRYLEFSRTAIEV-LPES--VSTLYNLQTLILERCYRLKKLF--PDIGNLTNLRHLKNSHSNLFEEMPLRIGKL-- 649 (1151)
Q Consensus 577 ~l~~Lr~L~Ls~n~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L-- 649 (1151)
++++|++|+|++|.++. +|.. +.++++|++|++++| .+..++ ..|+++++|++|++++|.+....|..++.+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccC
Confidence 77777777777777764 4444 777777777777777 343332 357777777777777777655566666666
Q ss_pred cCCCccCeeEeccCCCCC--ccc---------ccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCC
Q 044085 650 TSLRTLAKFAVGKSNCSG--LRE---------LRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTT 718 (1151)
Q Consensus 650 ~~L~~L~~~~~~~~~~~~--l~~---------L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 718 (1151)
++|+.|++..+....... +.. |+.|....+.+.. ...... ........++.|.+..+....
T Consensus 174 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-------~~~~~~-~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV-------DITGNF-SNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp CSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST-------TTTSGG-GGTSCSCCBSEEECCSSCCBC
T ss_pred CccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch-------hHHHHH-HhhcCcccccceecccccccc
Confidence 667777665554332110 000 1111111110000 000000 001111233444333111110
Q ss_pred CCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccC
Q 044085 719 NSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKG 797 (1151)
Q Consensus 719 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 797 (1151)
..............+..+ .+++|+.|++++|....++..... .+++|+.|+|++|.+....+ .+..+++|+.|+|++
T Consensus 246 ~~~~~~l~~~~~~~f~~l-~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 246 GFGFHNIKDPDQNTFAGL-ARSSVRHLDLSHGFVFSLNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp SSSCSSSTTGGGTTTTTT-TTSCCCEEECTTCCCCEECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccCCCChhhhhcc-ccCCccEEECCCCcccccChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 000000000000111111 125666666666665554332221 36667777777766655444 566666777777766
Q ss_pred ccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCcc
Q 044085 798 MAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLE 877 (1151)
Q Consensus 798 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~ 877 (1151)
|......+..+. .+++|+.|++++ |.+....+..+..+++|+.|++++ |.++ .++. +++|+
T Consensus 324 N~l~~~~~~~~~------~l~~L~~L~L~~----------N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~-~i~~-~~~L~ 384 (844)
T 3j0a_A 324 NLLGELYSSNFY------GLPKVAYIDLQK----------NHIAIIQDQTFKFLEKLQTLDLRD-NALT-TIHF-IPSIP 384 (844)
T ss_dssp CCCSCCCSCSCS------SCTTCCEEECCS----------CCCCCCCSSCSCSCCCCCEEEEET-CCSC-CCSS-CCSCS
T ss_pred CCCCccCHHHhc------CCCCCCEEECCC----------CCCCccChhhhcCCCCCCEEECCC-CCCC-cccC-CCCcc
Confidence 653322232222 256666666652 233333334455666666666666 4555 3333 55666
Q ss_pred EEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCC--ccccCCCCCccEEEEeCCcccc
Q 044085 878 RVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESL--PDGLHKLSHITTISMYGSRLVS 955 (1151)
Q Consensus 878 ~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l--~~~l~~l~~L~~L~ls~n~l~~ 955 (1151)
.|.+.++....+. ....+++.++++++. +..+ +..+.++++|+.|++++|.++.
T Consensus 385 ~L~l~~N~l~~l~-~~~~~l~~L~ls~N~-----------------------l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 385 DIFLSGNKLVTLP-KINLTANLIHLSENR-----------------------LENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp EEEEESCCCCCCC-CCCTTCCEEECCSCC-----------------------CCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred hhccCCCCccccc-ccccccceeecccCc-----------------------cccCchhhhhhcCCccceeeCCCCcccc
Confidence 6666655443221 123344555544432 1111 1223466777777777777765
Q ss_pred ccCCCC---CCCccEEEEcCCCCcc-----cCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccc
Q 044085 956 FAEGGL---PSNLCSLTLFGCRYLT-----ALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLF 1027 (1151)
Q Consensus 956 ~~~~~~---~~~L~~L~L~~n~~~~-----~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 1027 (1151)
.+.... .++|+.|++++|.+.. ..+..+..+++|++|+|++|.+.+..|..|..+++|+.|+|++|.+++++
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC
Confidence 543322 2567777777776652 22344666777777777777776666666667777777777777776655
Q ss_pred cccCCCCCCCcceEEecc
Q 044085 1028 FDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1028 ~~~~~~~l~~L~~L~l~~ 1045 (1151)
+.. +. ++|+.|++++
T Consensus 521 ~~~-~~--~~L~~L~Ls~ 535 (844)
T 3j0a_A 521 HND-LP--ANLEILDISR 535 (844)
T ss_dssp CCC-CC--SCCCEEEEEE
T ss_pred hhh-hh--ccccEEECCC
Confidence 432 22 5666666666
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-32 Score=342.68 Aligned_cols=495 Identities=17% Similarity=0.117 Sum_probs=278.5
Q ss_pred CCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcc-cccc-CccccCCCcccEEEccccccccc-chhhh
Q 044085 523 EVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYW-ILQL-PNDIGELKHLRYLEFSRTAIEVL-PESVS 599 (1151)
Q Consensus 523 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~l-p~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~ 599 (1151)
..+++++|.+..+.. ....+..|.++++|++|+|++|. +..+ |..|.++++|++|+|++|.|+.+ |..|.
T Consensus 22 lp~~l~~LdLs~N~i-------~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI-------RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCCC-------CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCcC-------CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 346888888876531 33455678999999999999984 5566 68899999999999999999976 78899
Q ss_pred cCCCCcEEeccccccccccccc--cccCCccCeeecCCCCccccCc-ccccCccCCCccCeeEeccCCC--CCcc-----
Q 044085 600 TLYNLQTLILERCYRLKKLFPD--IGNLTNLRHLKNSHSNLFEEMP-LRIGKLTSLRTLAKFAVGKSNC--SGLR----- 669 (1151)
Q Consensus 600 ~L~~L~~L~L~~~~~l~~lp~~--~~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~--~~l~----- 669 (1151)
++++|++|+|++|......|.. +.++++|++|++++|.+.+..| ..++++++|++|++..+..... ..+.
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999999999444445655 8999999999999998655444 5689999999998877654332 1111
Q ss_pred cccccccccCcEEEeCccCCCCHhHHHHHhcCCCC------CcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcc
Q 044085 670 ELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKE------KLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLK 743 (1151)
Q Consensus 670 ~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~ 743 (1151)
.|+.|....+.+.... ...+..+. .|+.|+++.|....... ..+........+.
T Consensus 175 ~L~~L~L~~n~l~~~~-----------~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~---------~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 175 TLSFFSLAANSLYSRV-----------SVDWGKCMNPFRNMVLEILDVSGNGWTVDIT---------GNFSNAISKSQAF 234 (844)
T ss_dssp SSCCCEECCSBSCCCC-----------CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTT---------SGGGGTSCSCCBS
T ss_pred ccceEECCCCcccccc-----------ccchhhcCCccccCceeEEecCCCcCchhHH---------HHHHhhcCccccc
Confidence 2222222221111100 00111111 36666666554322110 0111112234455
Q ss_pred eEEEeecCCC------CC----CcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCC
Q 044085 744 ELKVQGYGGA------KL----PTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKY 812 (1151)
Q Consensus 744 ~L~l~~~~~~------~~----p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~ 812 (1151)
.|.+..+... .+ +..+.....++|+.|++++|.+....+ .++.+++|+.|+|++|......+..+.+
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-- 312 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-- 312 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT--
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC--
Confidence 5555421110 00 011111123567777777777765544 5677777777777777644443433322
Q ss_pred CCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCC---CCCCCccEEEEccccCccc
Q 044085 813 CSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLP---QRFSSLERVVIRSCEQLLV 889 (1151)
Q Consensus 813 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p---~~l~~L~~L~l~~~~~l~~ 889 (1151)
+++|++|+++ .+.+.+..+..+..+++|+.|++++ |++.+..+ ..+++|+.|++.++....+
T Consensus 313 ----l~~L~~L~Ls----------~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 313 ----LDNLQVLNLS----------YNLLGELYSSNFYGLPKVAYIDLQK-NHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp ----CSSCCEEEEE----------SCCCSCCCSCSCSSCTTCCEEECCS-CCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred ----CCCCCEEECC----------CCCCCccCHHHhcCCCCCCEEECCC-CCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 6777777776 3334444455666777777777777 45653222 2355666666666543322
Q ss_pred cCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCC---CCCCcc
Q 044085 890 SYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGG---LPSNLC 966 (1151)
Q Consensus 890 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~---~~~~L~ 966 (1151)
..+++|+.+.++++.. ..+|.. ..+++.|++++|.++.++... -.++|+
T Consensus 378 --~~~~~L~~L~l~~N~l-----------------------~~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~ 429 (844)
T 3j0a_A 378 --HFIPSIPDIFLSGNKL-----------------------VTLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQ 429 (844)
T ss_dssp --SSCCSCSEEEEESCCC-----------------------CCCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred --cCCCCcchhccCCCCc-----------------------cccccc---ccccceeecccCccccCchhhhhhcCCccc
Confidence 2255555555555421 112211 344555666666555443211 113566
Q ss_pred EEEEcCCCCcccCcc-ccCCCCccceeeecCCCCC-----ccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcce
Q 044085 967 SLTLFGCRYLTALPN-GIYNLSSLQHLEIRACPRI-----ASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRD 1040 (1151)
Q Consensus 967 ~L~L~~n~~~~~l~~-~l~~l~~L~~L~L~~~~~~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 1040 (1151)
.|+|++|.+.+..+. .+..+++|+.|++++|.+. +..+..|..+++|+.|+|++|.+++.++. .+.++++|+.
T Consensus 430 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 508 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG-VFSHLTALRG 508 (844)
T ss_dssp EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTT-SSSSCCSCSE
T ss_pred eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChh-Hccchhhhhe
Confidence 666666655443221 2344556666666666554 22233445556666666666665555443 3555566666
Q ss_pred EEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCCcCCCCCCCCCcceEeeccCc
Q 044085 1041 LFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLISLPKNGLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1041 L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~ 1115 (1151)
|++++| +++.++...-.++|+.|+|++| ++..++...+ ++|+.|+++++|
T Consensus 509 L~Ls~N-----------------------~l~~l~~~~~~~~L~~L~Ls~N-~l~~~~~~~~-~~L~~l~l~~Np 558 (844)
T 3j0a_A 509 LSLNSN-----------------------RLTVLSHNDLPANLEILDISRN-QLLAPNPDVF-VSLSVLDITHNK 558 (844)
T ss_dssp EEEESC-----------------------CCSSCCCCCCCSCCCEEEEEEE-CCCCCCSCCC-SSCCEEEEEEEC
T ss_pred eECCCC-----------------------CCCccChhhhhccccEEECCCC-cCCCCChhHh-CCcCEEEecCCC
Confidence 666552 4444441111156666666666 4444444322 356666666544
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-32 Score=337.53 Aligned_cols=481 Identities=17% Similarity=0.107 Sum_probs=278.8
Q ss_pred CCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccccc-CccccCCCcccEEEccccccccc-chhhhcCC
Q 044085 525 EYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQL-PNDIGELKHLRYLEFSRTAIEVL-PESVSTLY 602 (1151)
Q Consensus 525 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~ 602 (1151)
+++++|.+.++.. ...++..|.++++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+ |..|++++
T Consensus 32 ~~l~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPL-------KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp TTCCEEECTTSCC-------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCcCEEECCCCCc-------CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 5677777765431 233445677888888888888887777 46678888888888888888766 66788888
Q ss_pred CCcEEeccccccccccc-cccccCCccCeeecCCCCccc-cCcccccCccCCCccCeeEeccCCCCCcccccccccccCc
Q 044085 603 NLQTLILERCYRLKKLF-PDIGNLTNLRHLKNSHSNLFE-EMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDK 680 (1151)
Q Consensus 603 ~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~ 680 (1151)
+|++|++++| .+..+| ..++++++|++|++++|.+.+ .+|..++++++|++|++..+...... ...+..+..
T Consensus 105 ~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~---- 178 (606)
T 3vq2_A 105 SLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-VNDLQFLRE---- 178 (606)
T ss_dssp TCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC-TTTTHHHHH----
T ss_pred cCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC-hhhhhhhhc----
Confidence 8888888887 455554 567888888888888887543 46777888888877766554322110 000111100
Q ss_pred EEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccC
Q 044085 681 LTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLG 760 (1151)
Q Consensus 681 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 760 (1151)
|+ ..+..|++++|....+|....
T Consensus 179 -------------------------L~--------------------------------~~l~~L~l~~n~l~~~~~~~~ 201 (606)
T 3vq2_A 179 -------------------------NP--------------------------------QVNLSLDMSLNPIDFIQDQAF 201 (606)
T ss_dssp -------------------------CT--------------------------------TCCCEEECTTCCCCEECTTTT
T ss_pred -------------------------cc--------------------------------cccceeeccCCCcceeCcccc
Confidence 00 013344555555555554443
Q ss_pred CCCCCCeeEEEEecCCCCC-CCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhccc
Q 044085 761 QSSFKNLVVLRFRNCNQCT-SLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHA 838 (1151)
Q Consensus 761 ~~~~~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 838 (1151)
. ..+|+.|++++|.+.. ..| .++.+++|+.+.+............. .....+..+..+.+..+.- ...+
T Consensus 202 ~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~---~~~~~~~~l~~l~l~~l~l----~~~~ 272 (606)
T 3vq2_A 202 Q--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI---FEPSIMEGLCDVTIDEFRL----TYTN 272 (606)
T ss_dssp T--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC---CCGGGGTTGGGSEEEEEEE----CCCT
T ss_pred c--CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc---cChHHhhhhhhccHhheec----cccc
Confidence 2 2356666666665532 122 34455555555543221000000000 0001122222222211100 0022
Q ss_pred CCCCCcccccccCCcccEEEeccCcCcccCCC--CCCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCC
Q 044085 839 GTAGGDQEAAKGFHSLRELSIINCSKLKGRLP--QRFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEES 916 (1151)
Q Consensus 839 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p--~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 916 (1151)
.+.+..+. +..+++|+.|++++ +.++ .+| ..+++|+.|++.+|..-.+..-.+++|+.|+++++.....
T Consensus 273 ~~~~~~~~-~~~l~~L~~L~l~~-~~~~-~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~------ 343 (606)
T 3vq2_A 273 DFSDDIVK-FHCLANVSAMSLAG-VSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSIS------ 343 (606)
T ss_dssp TCCGGGGS-CGGGTTCSEEEEES-CCCC-CCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEE------
T ss_pred cccccccc-cccCCCCCEEEecC-ccch-hhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccc------
Confidence 22222232 55667777777776 3444 344 2345667777766655333222566777777776643221
Q ss_pred cccccCcccCCCCCCCCccccCCCCCccEEEEeCCcccccc--CC--CCCCCccEEEEcCCCCcccCccccCCCCcccee
Q 044085 917 RAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFA--EG--GLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHL 992 (1151)
Q Consensus 917 ~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~--~~--~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L 992 (1151)
..+..+++|+.|++++|.++..+ .. .-.++|+.|++++|.+.+ +|..+..+++|++|
T Consensus 344 ------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 404 (606)
T 3vq2_A 344 ------------------FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHL 404 (606)
T ss_dssp ------------------CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEE
T ss_pred ------------------hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCee
Confidence 12345677777777777766542 11 112477777777777544 45666777777777
Q ss_pred eecCCCCCccCC-CCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccC---CCCCcceEEecCC
Q 044085 993 EIRACPRIASIP-EEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK---LPNSLVKLNIREF 1068 (1151)
Q Consensus 993 ~L~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c 1068 (1151)
++++|.+.+..| ..+..+++|++|++++|.+++..+. .+.++++|+.|++++|......++. -.++|+.|++++|
T Consensus 405 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 405 DFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG-IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp ECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCccCCccChhhhhccccCCEEECcCCCCCccchh-hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 777777766555 4566777777777777776655443 3667777777777775333211222 2256777777776
Q ss_pred CCCCcCC--CCCCCCCCCeeeEeCCCCCCcC-CCC-CCCCCcceEeeccCc
Q 044085 1069 PGLESLS--FVRNLTSLERLTLCECPNLISL-PKN-GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1069 ~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l-~~~-~~~~sL~~L~i~~c~ 1115 (1151)
.++.++ .+.++++|++|++++| .+..+ |.. ...++|+.|++++|.
T Consensus 484 -~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 484 -QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp -CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred -cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEECCCCc
Confidence 455553 6889999999999999 56665 332 346799999999995
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-32 Score=333.23 Aligned_cols=385 Identities=15% Similarity=0.166 Sum_probs=226.6
Q ss_pred ccccccchhhhcCCCCcEEeccccccccc------------------cccccc--cCCccCeeecCCCCccccCcccccC
Q 044085 589 TAIEVLPESVSTLYNLQTLILERCYRLKK------------------LFPDIG--NLTNLRHLKNSHSNLFEEMPLRIGK 648 (1151)
Q Consensus 589 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~~~--~L~~L~~L~l~~~~~~~~~p~~i~~ 648 (1151)
|.++.+|..++++++|++|+|++| .+.. +|..++ ++++|++|++++|.+.+.+|..+++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCccCCHHHhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 455556666777777777777776 3444 666666 7777777777777666666666666
Q ss_pred ccCCCccCeeEec-cCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhH
Q 044085 649 LTSLRTLAKFAVG-KSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAE 727 (1151)
Q Consensus 649 L~~L~~L~~~~~~-~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 727 (1151)
+++|++|++..+. ... ...+.
T Consensus 272 l~~L~~L~Ls~n~~l~~-----------------------------~~lp~----------------------------- 293 (636)
T 4eco_A 272 LPEMQLINVACNRGISG-----------------------------EQLKD----------------------------- 293 (636)
T ss_dssp CSSCCEEECTTCTTSCH-----------------------------HHHHH-----------------------------
T ss_pred CCCCCEEECcCCCCCcc-----------------------------ccchH-----------------------------
Confidence 6666666543331 100 00000
Q ss_pred HHHhHhhccCCCCCcceEEEeecCCCCCCc--ccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeC
Q 044085 728 IQTRVLEMLKPHYGLKELKVQGYGGAKLPT--WLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVG 805 (1151)
Q Consensus 728 ~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~ 805 (1151)
....+..+..+++|+.|++++|....+|. .+.. +++|+.|++++|.+.+.+|.++.+++|+.|++++|.. ..++
T Consensus 294 -~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l-~~lp 369 (636)
T 4eco_A 294 -DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQI-TEIP 369 (636)
T ss_dssp -HHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEE-EECC
T ss_pred -HHHhhhccccCCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcc-cccc
Confidence 00111122334678888888888888888 6764 8899999999998876777888889999999988863 3555
Q ss_pred ccccCCCCCCCCCC-cceeeccccchhhhhhcccCCCCCccccccc--CCcccEEEeccCcCcccCCCCCCCCccEEEEc
Q 044085 806 LEFCGKYCSEPFPS-LETLCFEDMQELEEWISHAGTAGGDQEAAKG--FHSLRELSIINCSKLKGRLPQRFSSLERVVIR 882 (1151)
Q Consensus 806 ~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~ 882 (1151)
..+.. +++ |++|++++ +.+. ..|..+.. +++|+.|++++ +.+++..|..++..
T Consensus 370 ~~l~~------l~~~L~~L~Ls~----------N~l~-~lp~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~~------ 425 (636)
T 4eco_A 370 ANFCG------FTEQVENLSFAH----------NKLK-YIPNIFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPL------ 425 (636)
T ss_dssp TTSEE------ECTTCCEEECCS----------SCCS-SCCSCCCTTCSSCEEEEECCS-SCTTTTTTCSSCTT------
T ss_pred Hhhhh------hcccCcEEEccC----------CcCc-ccchhhhhcccCccCEEECcC-CcCCCcchhhhccc------
Confidence 44332 666 77777763 2223 33444443 34788888888 56665566544311
Q ss_pred cccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccc-cCCCCCccEEEEeCCccccccCCCC
Q 044085 883 SCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDG-LHKLSHITTISMYGSRLVSFAEGGL 961 (1151)
Q Consensus 883 ~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~-l~~l~~L~~L~ls~n~l~~~~~~~~ 961 (1151)
....-.+++|+.|+++++. +..+|.. +..+++|+.|++++|.++.+|...+
T Consensus 426 -----~~~~~~~~~L~~L~Ls~N~-----------------------l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 426 -----DPTPFKGINVSSINLSNNQ-----------------------ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp -----CSSCCCCCCEEEEECCSSC-----------------------CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred -----ccccccCCCCCEEECcCCc-----------------------cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 0001122344555554432 1233333 3346777777777777776665544
Q ss_pred C--C-------CccEEEEcCCCCcccCccccC--CCCccceeeecCCCCCccCCCCCCCCCCccEEEecC------CCcc
Q 044085 962 P--S-------NLCSLTLFGCRYLTALPNGIY--NLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEG------PNIC 1024 (1151)
Q Consensus 962 ~--~-------~L~~L~L~~n~~~~~l~~~l~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~------n~l~ 1024 (1151)
. . +|+.|+|++|.+. .+|..+. .+++|++|++++|++.+ +|..+..+++|+.|+|++ |.+.
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccc
Confidence 3 1 6777777777666 4566555 67777777777776665 666666677777777743 4444
Q ss_pred ccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCCCCcCCCCCCC
Q 044085 1025 KLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECPNLISLPKNGLP 1103 (1151)
Q Consensus 1025 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 1103 (1151)
+..+. .+.++++|+.|++++ +.+..+| .+. ++|+.|+|++|+ +..++..++.
T Consensus 556 ~~~p~-~l~~l~~L~~L~Ls~-----------------------N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~~~~~~~ 608 (636)
T 4eco_A 556 REWPE-GITLCPSLTQLQIGS-----------------------NDIRKVNEKIT--PNISVLDIKDNP-NISIDLSYVC 608 (636)
T ss_dssp CCCCT-TGGGCSSCCEEECCS-----------------------SCCCBCCSCCC--TTCCEEECCSCT-TCEEECTTTH
T ss_pred ccChH-HHhcCCCCCEEECCC-----------------------CcCCccCHhHh--CcCCEEECcCCC-CccccHHhcc
Confidence 33322 355566666666666 2345555 222 677777777774 3333322111
Q ss_pred ----------CCcceEeeccCchH
Q 044085 1104 ----------PSLVYVDIYSCPYL 1117 (1151)
Q Consensus 1104 ----------~sL~~L~i~~c~~L 1117 (1151)
...+..++.+||.|
T Consensus 609 ~~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 609 PYIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp HHHHTTCCEEECCTTSEEESCGGG
T ss_pred hhhhcccceeecCCccccCCCccc
Confidence 12244567777766
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.4e-32 Score=326.10 Aligned_cols=457 Identities=18% Similarity=0.171 Sum_probs=293.6
Q ss_pred CcccEEEecCcccccc-CccccCCCcccEEEcccccccccc-hhhhcCCCCcEEeccccccccccccc-cccCCccCeee
Q 044085 556 RRLRVLSLCGYWILQL-PNDIGELKHLRYLEFSRTAIEVLP-ESVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLK 632 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~ 632 (1151)
+.|++|+|++|.++.+ |..|.++++|++|+|++|.++.+| ..|.++++|++|++++| .+..+|.. ++++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 5788888888888776 467888888888888888888764 56888888888888888 55555554 88888888888
Q ss_pred cCCCCccc-cCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEE
Q 044085 633 NSHSNLFE-EMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSL 711 (1151)
Q Consensus 633 l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 711 (1151)
+++|.+.. ..|..++++++|++|++..+.... .+ . ...+.++++|+.|++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~-----~~---~---------------------~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS-----EI---R---------------------RIDFAGLTSLNELEI 155 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-----EE---C---------------------TTTTTTCCEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCcccc-----cc---C---------------------HhhhhcccccCeeec
Confidence 88887543 345677888888888766553110 00 0 012445566777777
Q ss_pred EecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCC----CCCCCCC
Q 044085 712 KWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTS----LPSVGHL 787 (1151)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~----l~~l~~l 787 (1151)
+.|.... .....+..+++|+.|++.++....+|.++.. .+++|+.|++++|.+.+. .+....+
T Consensus 156 ~~n~l~~------------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 222 (549)
T 2z81_A 156 KALSLRN------------YQSQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVS 222 (549)
T ss_dssp EETTCCE------------ECTTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCC
T ss_pred cCCcccc------------cChhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhh
Confidence 7766532 1223455566777777777776666665532 367888888888877542 2234456
Q ss_pred CCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCccc
Q 044085 788 PSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKG 867 (1151)
Q Consensus 788 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 867 (1151)
++|+.|++++|......+..+.. ....+++|+.+.+.++..-. + ..+.......+..+
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~--~~~~~~~L~~l~l~~~~~~~-~---~~~~~~~~~~~~~l---------------- 280 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNELLK--LLRYILELSEVEFDDCTLNG-L---GDFNPSESDVVSEL---------------- 280 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHHHHG--GGGGCTTCCEEEEESCEEEC-C---SCCCCCTTTCCCCC----------------
T ss_pred hcccceeccccccchhHHHHHHH--Hhhhhccccccccccccccc-c---ccccccchhhhhhh----------------
Confidence 77777777776421111100000 00113444444444332100 0 00000001112233
Q ss_pred CCCCCCCCccEEEEccccCccc--------cCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCcccc-C
Q 044085 868 RLPQRFSSLERVVIRSCEQLLV--------SYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGL-H 938 (1151)
Q Consensus 868 ~~p~~l~~L~~L~l~~~~~l~~--------~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l-~ 938 (1151)
++++.|.+.++..... .....++|+.|+++++. +..+|..+ .
T Consensus 281 ------~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-----------------------l~~ip~~~~~ 331 (549)
T 2z81_A 281 ------GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-----------------------VFLVPCSFSQ 331 (549)
T ss_dssp ------TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-----------------------CCCCCHHHHH
T ss_pred ------cccccccccccccchhhhcccchhhhhhcccceEEEeccCc-----------------------cccCCHHHHh
Confidence 4444444443321110 01123566777776653 34556555 4
Q ss_pred CCCCccEEEEeCCcccccc-C----CCCCCCccEEEEcCCCCcccCc--cccCCCCccceeeecCCCCCccCCCCCCCCC
Q 044085 939 KLSHITTISMYGSRLVSFA-E----GGLPSNLCSLTLFGCRYLTALP--NGIYNLSSLQHLEIRACPRIASIPEEVGFPP 1011 (1151)
Q Consensus 939 ~l~~L~~L~ls~n~l~~~~-~----~~~~~~L~~L~L~~n~~~~~l~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 1011 (1151)
++++|+.|++++|.++... . ....++|+.|++++|.+.+..+ ..+..+++|++|++++|.+. .+|..+..++
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 410 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE 410 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence 6889999999999887531 1 1223589999999998866432 45788899999999999777 6788888889
Q ss_pred CccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCC
Q 044085 1012 NITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCEC 1091 (1151)
Q Consensus 1012 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 1091 (1151)
+|++|++++|.++.++.. -.++|+.|++++|. +..+..-.++|+.|+++++ +++.+|....+++|++|+|++|
T Consensus 411 ~L~~L~Ls~N~l~~l~~~----~~~~L~~L~Ls~N~--l~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 411 KMRFLNLSSTGIRVVKTC----IPQTLEVLDVSNNN--LDSFSLFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISRN 483 (549)
T ss_dssp TCCEEECTTSCCSCCCTT----SCTTCSEEECCSSC--CSCCCCCCTTCCEEECCSS-CCSSCCCGGGCTTCCEEECCSS
T ss_pred cccEEECCCCCcccccch----hcCCceEEECCCCC--hhhhcccCChhcEEECCCC-ccCcCCCcccCccCCEEecCCC
Confidence 999999999998866532 13689999999853 3333344468999999985 7888887778999999999999
Q ss_pred CCCCcCCCC--CCCCCcceEeeccCc
Q 044085 1092 PNLISLPKN--GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1092 ~~l~~l~~~--~~~~sL~~L~i~~c~ 1115 (1151)
.++.++.. ...++|+.|++++||
T Consensus 484 -~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 484 -QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp -CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred -ccCCcCHHHHhcCcccCEEEecCCC
Confidence 67777764 346899999999876
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=321.68 Aligned_cols=427 Identities=19% Similarity=0.189 Sum_probs=270.3
Q ss_pred CcccEEEecCccccccC-ccccCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccccccccCCccCeeec
Q 044085 556 RRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKN 633 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 633 (1151)
++|++|+|++|.++.++ ..|.++++|++|+|++|.|+.+ |..|.++++|++|++++| .+..+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 56666666666666554 4566666666666666666655 455666666666666666 45556555 5666666666
Q ss_pred CCCCccc-cCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEE
Q 044085 634 SHSNLFE-EMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK 712 (1151)
Q Consensus 634 ~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 712 (1151)
++|.+.+ .+|..++++++|++|++..+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n---------------------------------------------------- 125 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTT---------------------------------------------------- 125 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEES----------------------------------------------------
T ss_pred cCCccccccchhhhccCCcceEEEecCc----------------------------------------------------
Confidence 6666433 34555666666666554443
Q ss_pred ecCCCCCCCCchhhHHHHhHhhccCCCCCc--ceEEEeecCC---CCCCcccCCCCCC-CeeEEEEecCCCCCCCC--CC
Q 044085 713 WGDKTTNSDSREVAEIQTRVLEMLKPHYGL--KELKVQGYGG---AKLPTWLGQSSFK-NLVVLRFRNCNQCTSLP--SV 784 (1151)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~~~-~L~~L~L~~~~~~~~l~--~l 784 (1151)
.... ..+..+++| +.|++++|.. ...|.++.. +. +...+++++|.+.+.++ .+
T Consensus 126 --~l~~---------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~~~~~~~~~ 186 (520)
T 2z7x_B 126 --HLEK---------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEFHFILDVSV 186 (520)
T ss_dssp --SCCG---------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCCCCCCCCCC
T ss_pred --ccch---------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcchhhhhhhhh
Confidence 2210 001112223 5555555543 233444432 22 34456667776665555 56
Q ss_pred CCCCCcceeeccCcc-------CceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEE
Q 044085 785 GHLPSLKNLVIKGMA-------KVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLREL 857 (1151)
Q Consensus 785 ~~l~~L~~L~L~~~~-------~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L 857 (1151)
..+++|+.|++++|. ....++ .+ ..+++|+.|++.++.--.... . ..+.. ..+++|++|
T Consensus 187 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l------~~l~~L~~L~l~~~~l~~~~~-----~-~~~~~-~~~~~L~~L 252 (520)
T 2z7x_B 187 KTVANLELSNIKCVLEDNKCSYFLSILA-KL------QTNPKLSNLTLNNIETTWNSF-----I-RILQL-VWHTTVWYF 252 (520)
T ss_dssp TTCSEEEECCEEECCSTTTTHHHHHHHH-GG------GGCTTCCEEEEEEEEEEHHHH-----H-HHHHH-HHTSSCSEE
T ss_pred hcccceeeccccccccccccceeecchh-hh------ccccchhhccccccccCHHHH-----H-HHHHH-hhhCcccEE
Confidence 677888888887764 111111 11 226667777665432110000 0 00000 124578888
Q ss_pred EeccCcCcccCCCCCC-----CCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCC
Q 044085 858 SIINCSKLKGRLPQRF-----SSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQES 932 (1151)
Q Consensus 858 ~l~~c~~L~~~~p~~l-----~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~ 932 (1151)
++++ +++++.+|..+ ..++ .|+.++++++. . .
T Consensus 253 ~l~~-n~l~~~~p~~~~~~~~~~l~------------------~L~~l~l~~n~-----------------------~-~ 289 (520)
T 2z7x_B 253 SISN-VKLQGQLDFRDFDYSGTSLK------------------ALSIHQVVSDV-----------------------F-G 289 (520)
T ss_dssp EEEE-EEEESCCCCCCCCCCSCCCC------------------EEEEEEEEECC-----------------------C-C
T ss_pred Eeec-ccccCccccchhhcccccCc------------------eeEeccccccc-----------------------e-e
Confidence 8888 46666666544 3333 33333333322 1 1
Q ss_pred Cc-cccCCC---CCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCc--cCCCC
Q 044085 933 LP-DGLHKL---SHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIA--SIPEE 1006 (1151)
Q Consensus 933 l~-~~l~~l---~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~--~~~~~ 1006 (1151)
+| ..+..+ .+|+.|++++|.+...+.....++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+ .+|..
T Consensus 290 ~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp SCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred cchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence 22 112222 5788999999888766542334689999999999888888888999999999999998876 55666
Q ss_pred CCCCCCccEEEecCCCccc-cccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCC
Q 044085 1007 VGFPPNITELHIEGPNICK-LFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLE 1084 (1151)
Q Consensus 1007 ~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~ 1084 (1151)
+..+++|++|++++|.+++ ++. ..+..+++|+.|++++|......+..++++|+.|++++| +++.+| .+..+++|+
T Consensus 370 ~~~l~~L~~L~Ls~N~l~~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 370 TTQMKSLQQLDISQNSVSYDEKK-GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQ 447 (520)
T ss_dssp HTTCTTCCEEECCSSCCBCCGGG-CSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCC
T ss_pred HhhCCCCCEEECCCCcCCccccc-chhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCC
Confidence 7889999999999999887 443 347888999999999976555555567789999999996 688888 466999999
Q ss_pred eeeEeCCCCCCcCCCC--CCCCCcceEeeccCch
Q 044085 1085 RLTLCECPNLISLPKN--GLPPSLVYVDIYSCPY 1116 (1151)
Q Consensus 1085 ~L~l~~c~~l~~l~~~--~~~~sL~~L~i~~c~~ 1116 (1151)
+|++++| .++.+|.. ...++|+.|++++||-
T Consensus 448 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 448 ELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 9999999 78888875 3357999999999863
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-31 Score=329.61 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=105.2
Q ss_pred ccccccchhhhcCCCCcEEeccccccccc------------------cccccc--cCCccCeeecCCCCccccCcccccC
Q 044085 589 TAIEVLPESVSTLYNLQTLILERCYRLKK------------------LFPDIG--NLTNLRHLKNSHSNLFEEMPLRIGK 648 (1151)
Q Consensus 589 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~------------------lp~~~~--~L~~L~~L~l~~~~~~~~~p~~i~~ 648 (1151)
|.++.+|..+++|++|++|+|++| .+.. +|..++ ++++|++|++++|.+.+.+|..+++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 455557777777777777777777 3444 677666 7777777777777666667766777
Q ss_pred ccCCCccCeeEec-cCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhH
Q 044085 649 LTSLRTLAKFAVG-KSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAE 727 (1151)
Q Consensus 649 L~~L~~L~~~~~~-~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 727 (1151)
+++|+.|++..+. ... ...+.
T Consensus 514 L~~L~~L~Ls~N~~lsg-----------------------------~~iP~----------------------------- 535 (876)
T 4ecn_A 514 LPELQSLNIACNRGISA-----------------------------AQLKA----------------------------- 535 (876)
T ss_dssp CSSCCEEECTTCTTSCH-----------------------------HHHHH-----------------------------
T ss_pred CCCCCEEECcCCCCccc-----------------------------ccchH-----------------------------
Confidence 7766666543331 100 00000
Q ss_pred HHHhHh-hccCCCCCcceEEEeecCCCCCCc--ccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEe
Q 044085 728 IQTRVL-EMLKPHYGLKELKVQGYGGAKLPT--WLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSV 804 (1151)
Q Consensus 728 ~~~~~l-~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~ 804 (1151)
....+ ..+..+++|+.|++++|....+|. .+.. +++|+.|+|++|.+. .+|.++.+++|+.|+|++|... .+
T Consensus 536 -~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~l 610 (876)
T 4ecn_A 536 -DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EI 610 (876)
T ss_dssp -HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CC
T ss_pred -HHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cc
Confidence 00111 134456678888888887778887 6653 788888888888876 6777888888888888887633 44
Q ss_pred CccccCCCCCCCCCC-cceeecc
Q 044085 805 GLEFCGKYCSEPFPS-LETLCFE 826 (1151)
Q Consensus 805 ~~~~~~~~~~~~~~~-L~~L~l~ 826 (1151)
+..+.. +++ |+.|+++
T Consensus 611 p~~l~~------l~~~L~~L~Ls 627 (876)
T 4ecn_A 611 PEDFCA------FTDQVEGLGFS 627 (876)
T ss_dssp CTTSCE------ECTTCCEEECC
T ss_pred hHHHhh------ccccCCEEECc
Confidence 333222 444 5555554
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=7.3e-31 Score=319.74 Aligned_cols=483 Identities=18% Similarity=0.146 Sum_probs=286.3
Q ss_pred CCCceeeEEEEecccCcccccccccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccC-cccc
Q 044085 498 FSRNLRHLSYLCSRFDGIKRFEGLHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLP-NDIG 576 (1151)
Q Consensus 498 ~~~~~r~l~~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~ 576 (1151)
++..++++.+..+...... ...+..+++|++|.+.++.. ....+..|..+++|++|+|++|.++.++ ..|+
T Consensus 26 l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i-------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEI-------QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTCCC-------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccccccEEEccCCccCccC-hhHhhCCCCceEEECCCCcC-------CccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 4556777776554333221 12456778888888776531 2344566788888888888888887776 6788
Q ss_pred CCCcccEEEcccccccccch-hhhcCCCCcEEecccccccc--ccccccccCCccCeeecCCCCccccCcccccCccCC-
Q 044085 577 ELKHLRYLEFSRTAIEVLPE-SVSTLYNLQTLILERCYRLK--KLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSL- 652 (1151)
Q Consensus 577 ~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L- 652 (1151)
++++|++|++++|.++.+|. .++++++|++|++++| .+. .+|..+.++++|++|++++|.+....|..++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 88888888888888887765 5888888888888888 444 367788888888888888888665556667777777
Q ss_pred ---CccCeeEeccCCC--CCcc--cccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchh
Q 044085 653 ---RTLAKFAVGKSNC--SGLR--ELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREV 725 (1151)
Q Consensus 653 ---~~L~~~~~~~~~~--~~l~--~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 725 (1151)
+.|++..+..... ..+. .|+.| .+.+ ...........+.++..++.+.+..............
T Consensus 177 ~~~~~L~l~~n~l~~~~~~~~~~~~L~~L-------~l~~---n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 246 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKL-------TLRN---NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246 (570)
T ss_dssp TCCCEEECTTCCCCEECTTTTTTCEEEEE-------EEES---CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEEC
T ss_pred hhhhhcccCCCCceecCHHHhccCcceeE-------eccc---ccccccchhhhhcCccccceeeeccccccCchhhhhc
Confidence 4444433322211 0011 12222 1111 1111123344455666666666654432211000000
Q ss_pred hHHHHhHhhccCCCCCcceEEEeec-C-CCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceE
Q 044085 726 AEIQTRVLEMLKPHYGLKELKVQGY-G-GAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKS 803 (1151)
Q Consensus 726 ~~~~~~~l~~l~~~~~L~~L~l~~~-~-~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~ 803 (1151)
....+..+... .++.+.+.++ . ....|.++. .+++|+.|++++|.+....+.+..+ +|+.|++++|... .
T Consensus 247 ---~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~ 318 (570)
T 2z63_A 247 ---DKSALEGLCNL-TIEEFRLAYLDYYLDDIIDLFN--CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-Q 318 (570)
T ss_dssp ---CTTTTGGGGGS-EEEEEEEEETTEEESCSTTTTG--GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-S
T ss_pred ---chhhhcccccc-chhhhhhhcchhhhhhchhhhc--CcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-c
Confidence 00111111111 3556666554 1 223444444 3778888888888775433356666 8888888887643 3
Q ss_pred eCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCC--CCCCCCccEEEE
Q 044085 804 VGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRL--PQRFSSLERVVI 881 (1151)
Q Consensus 804 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~--p~~l~~L~~L~l 881 (1151)
++. ..+++|+.|.+.++.. ....+ ...+++|+.|++++ +.+++.. |.
T Consensus 319 l~~--------~~l~~L~~L~l~~n~~----------~~~~~--~~~~~~L~~L~l~~-n~l~~~~~~~~---------- 367 (570)
T 2z63_A 319 FPT--------LKLKSLKRLTFTSNKG----------GNAFS--EVDLPSLEFLDLSR-NGLSFKGCCSQ---------- 367 (570)
T ss_dssp CCB--------CBCSSCCEEEEESCBS----------CCBCC--CCBCTTCCEEECCS-SCCBEEEEEEH----------
T ss_pred cCc--------ccccccCEEeCcCCcc----------ccccc--cccCCCCCEEeCcC-CccCccccccc----------
Confidence 332 2378888888875431 11111 14789999999998 4555211 11
Q ss_pred ccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccC-CC
Q 044085 882 RSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAE-GG 960 (1151)
Q Consensus 882 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~-~~ 960 (1151)
....+++|+.|+++++. +..++..+..+++|+.|++++|.+...+. ..
T Consensus 368 --------~~~~~~~L~~L~l~~n~-----------------------l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 368 --------SDFGTTSLKYLDLSFNG-----------------------VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp --------HHHTCSCCCEEECCSCS-----------------------EEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred --------cccccCccCEEECCCCc-----------------------cccccccccccCCCCEEEccCCccccccchhh
Confidence 11123344444444432 11223335567777777777777765533 12
Q ss_pred C--CCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCC-ccCCCCCCCCCCccEEEecCCCccccccccCCCCCCC
Q 044085 961 L--PSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRI-ASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTS 1037 (1151)
Q Consensus 961 ~--~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 1037 (1151)
+ .++|+.|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.+++..+. .+.++++
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 495 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSS 495 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccC
Confidence 2 257777777777776666666777777777777777765 35666677777777777777777665443 3666667
Q ss_pred cceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCC
Q 044085 1038 VRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPN 1093 (1151)
Q Consensus 1038 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~ 1093 (1151)
|+.|++++ +.++.++ .+.++++|++|++++|+-
T Consensus 496 L~~L~l~~-----------------------n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 496 LQVLNMAS-----------------------NQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CCEEECCS-----------------------SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCEEeCCC-----------------------CcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 77666666 2344443 456777788888877753
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.1e-30 Score=315.75 Aligned_cols=472 Identities=18% Similarity=0.127 Sum_probs=312.7
Q ss_pred CCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccC-ccccCCCcccEEEcccccccccc-hhhhcCC
Q 044085 525 EYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVLP-ESVSTLY 602 (1151)
Q Consensus 525 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~ 602 (1151)
+.+++|.+.++.. ....+..|..+++|++|+|++|.++.++ ..|.++++|++|+|++|.++.+| ..|.+++
T Consensus 28 ~~l~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPL-------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCC-------CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccEEEccCCcc-------CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 4577777665431 2334456777888888888888877775 56788888888888888887764 5688888
Q ss_pred CCcEEecccccccccccc-ccccCCccCeeecCCCCccc-cCcccccCccCCCccCeeEeccCCCCCcccccccccccCc
Q 044085 603 NLQTLILERCYRLKKLFP-DIGNLTNLRHLKNSHSNLFE-EMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDK 680 (1151)
Q Consensus 603 ~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~ 680 (1151)
+|++|++++| .+..+|. .++++++|++|++++|.+.. .+|..++++++|++|++..+......
T Consensus 101 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~-------------- 165 (570)
T 2z63_A 101 SLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-------------- 165 (570)
T ss_dssp TCCEEECTTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC--------------
T ss_pred cccccccccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec--------------
Confidence 8888888887 5666654 57788888888888887544 36777777777777765443221100
Q ss_pred EEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCc----ceEEEeecCCCCCC
Q 044085 681 LTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGL----KELKVQGYGGAKLP 756 (1151)
Q Consensus 681 l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L----~~L~l~~~~~~~~p 756 (1151)
...+..+.+| ..|+++++....++
T Consensus 166 ----------------------------------------------------~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 166 ----------------------------------------------------CTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp ----------------------------------------------------GGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred ----------------------------------------------------HHHccchhccchhhhhcccCCCCceecC
Confidence 0000011122 56777777777666
Q ss_pred cccCCCCCCCeeEEEEecCCCCC-CCC-CCCCCCCcceeeccCc-----cCceEeCccccCCCCCCCCCCcceeeccccc
Q 044085 757 TWLGQSSFKNLVVLRFRNCNQCT-SLP-SVGHLPSLKNLVIKGM-----AKVKSVGLEFCGKYCSEPFPSLETLCFEDMQ 829 (1151)
Q Consensus 757 ~~~~~~~~~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~L~~~-----~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 829 (1151)
..... ..+|+.|++++|.... .++ .+..+++++.+.+... ..+..++. ..|..+..+.+..+.
T Consensus 194 ~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~--------~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 194 PGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK--------SALEGLCNLTIEEFR 263 (570)
T ss_dssp TTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT--------TTTGGGGGSEEEEEE
T ss_pred HHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch--------hhhccccccchhhhh
Confidence 54443 3489999999885432 122 3445556655544321 11112211 113333322222111
Q ss_pred hhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCC---CCCCccEEEEccccCccccCCCCCCcceEEEcCCC
Q 044085 830 ELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQ---RFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFW 906 (1151)
Q Consensus 830 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~---~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~ 906 (1151)
- .....+.+..+..+..+++|+.|++++ +.++ .+|. .+ +|+.|++.+|....+....+++|+.|++.++.
T Consensus 264 l----~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 264 L----AYLDYYLDDIIDLFNCLTNVSSFSLVS-VTIE-RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK 336 (570)
T ss_dssp E----EETTEEESCSTTTTGGGTTCSEEEEES-CEEC-SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCB
T ss_pred h----hcchhhhhhchhhhcCcCcccEEEecC-ccch-hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCc
Confidence 0 000022234455667889999999998 4666 4663 34 78999999888776666678899999998875
Q ss_pred CccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccC--C--CCCCCccEEEEcCCCCcccCccc
Q 044085 907 EVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAE--G--GLPSNLCSLTLFGCRYLTALPNG 982 (1151)
Q Consensus 907 ~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~--~--~~~~~L~~L~L~~n~~~~~l~~~ 982 (1151)
... ..+ ...+++|+.|++++|.++.... . .-.++|+.|++++|.+.+.. ..
T Consensus 337 ~~~----------------------~~~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~ 391 (570)
T 2z63_A 337 GGN----------------------AFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SN 391 (570)
T ss_dssp SCC----------------------BCC--CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEE-EE
T ss_pred ccc----------------------ccc--cccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccc-cc
Confidence 321 111 1567889999999988876531 1 11258999999999876644 34
Q ss_pred cCCCCccceeeecCCCCCccCC-CCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccC---CCC
Q 044085 983 IYNLSSLQHLEIRACPRIASIP-EEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK---LPN 1058 (1151)
Q Consensus 983 l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~ 1058 (1151)
+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. .+.++++|+.|++++|......++. -.+
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh-hhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 8889999999999998877655 4578889999999999988766544 4788899999999986543223332 235
Q ss_pred CcceEEecCCCCCCcC-C-CCCCCCCCCeeeEeCCCCCCcCCCC--CCCCCcceEeeccCc
Q 044085 1059 SLVKLNIREFPGLESL-S-FVRNLTSLERLTLCECPNLISLPKN--GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1059 ~L~~L~l~~c~~l~~l-~-~l~~l~~L~~L~l~~c~~l~~l~~~--~~~~sL~~L~i~~c~ 1115 (1151)
+|+.|++++| .++.+ + .+.++++|++|++++| .+..++.. ...++|+.|++++||
T Consensus 471 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 471 NLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 8999999986 46665 4 7889999999999999 78877764 346899999999965
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=4.3e-30 Score=310.88 Aligned_cols=431 Identities=19% Similarity=0.156 Sum_probs=268.3
Q ss_pred CcccEEEecCccccccC-ccccCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccccccccCCccCeeec
Q 044085 556 RRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKN 633 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 633 (1151)
+.|++|+|++|.++.++ ..|.++++|++|+|++|.|+.+ |..|.++++|++|++++| .+..+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc--ccccCCEEEC
Confidence 55666666666666665 4566666666666666666655 445666666666666666 45566655 5666666666
Q ss_pred CCCCccc-cCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEE
Q 044085 634 SHSNLFE-EMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK 712 (1151)
Q Consensus 634 ~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 712 (1151)
++|.+.. .+|..++++++|++|++..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n---------------------------------------------------- 156 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAA---------------------------------------------------- 156 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECS----------------------------------------------------
T ss_pred CCCCccccCchHhhcccCcccEEecCCC----------------------------------------------------
Confidence 6666433 22345666666665554433
Q ss_pred ecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCC--C-CCCcccCCCCCCCeeEEEEecCCCCCCCC--CCCCC
Q 044085 713 WGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGG--A-KLPTWLGQSSFKNLVVLRFRNCNQCTSLP--SVGHL 787 (1151)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~L~~~~~~~~l~--~l~~l 787 (1151)
.... ..+..+..+ +|+.|++++|.. . ..|.++..... ..-.+++++|.+...++ .+..+
T Consensus 157 --~l~~------------~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l 220 (562)
T 3a79_B 157 --KFRQ------------LDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNAL 220 (562)
T ss_dssp --BCCT------------TTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSE
T ss_pred --cccc------------Cchhhhhhc-eeeEEEeecccccccccCcccccccCc-ceEEEEecCccchhhhhhhccccc
Confidence 2211 001111111 235555555543 2 22333322111 12245666666655444 45667
Q ss_pred CCcceeeccCccC----ceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCc
Q 044085 788 PSLKNLVIKGMAK----VKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCS 863 (1151)
Q Consensus 788 ~~L~~L~L~~~~~----l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~ 863 (1151)
++|+.|++++|.. +......+ ...++|+.+.+.++.--. +.+. ..+.. ...++|++|++++ +
T Consensus 221 ~~L~~L~l~~n~~~~~~l~~~~~~l------~~l~~L~~L~L~~~~l~~-----~~~~-~~~~~-~~~~~L~~L~l~~-n 286 (562)
T 3a79_B 221 GHLQLSNIKLNDENCQRLMTFLSEL------TRGPTLLNVTLQHIETTW-----KCSV-KLFQF-FWPRPVEYLNIYN-L 286 (562)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHHHH------HSCSSCEEEEEEEEEECH-----HHHH-HHHHH-HTTSSEEEEEEEE-E
T ss_pred ceEEEecccccccccchHHHHHHHH------hccCcceEEEecCCcCcH-----HHHH-HHHHh-hhcccccEEEEec-c
Confidence 7777777777631 00000111 125666666665432100 0000 00111 1245899999999 5
Q ss_pred CcccCCCCCC-----CCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCc-cc-
Q 044085 864 KLKGRLPQRF-----SSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLP-DG- 936 (1151)
Q Consensus 864 ~L~~~~p~~l-----~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~-~~- 936 (1151)
.+++.+|..+ ++++.|.+.++....+ .+| ..
T Consensus 287 ~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~------------------------------------------~~p~~~~ 324 (562)
T 3a79_B 287 TITERIDREEFTYSETALKSLMIEHVKNQVF------------------------------------------LFSKEAL 324 (562)
T ss_dssp EECSCCCCCCCCCCSCSCCEEEEEEEEECCC------------------------------------------SSCHHHH
T ss_pred Eeeccccchhhhcccccchheehhhccccee------------------------------------------ecChhhh
Confidence 7776777655 6666666655433211 111 01
Q ss_pred --cCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCc--cCCCCCCCCCC
Q 044085 937 --LHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIA--SIPEEVGFPPN 1012 (1151)
Q Consensus 937 --l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~--~~~~~~~~l~~ 1012 (1151)
+....+|+.|++++|.+..++.....++|+.|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++
T Consensus 325 ~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404 (562)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred hhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence 11125688888988888765542344689999999999888788888999999999999998875 33566788899
Q ss_pred ccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCC
Q 044085 1013 ITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCEC 1091 (1151)
Q Consensus 1013 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c 1091 (1151)
|+.|++++|.+++..+...+.++++|+.|++++|......+..+|++|+.|+++++ .++.+| .+..+++|++|++++|
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence 99999999998873333357888999999999876555555567788999999986 788888 5669999999999999
Q ss_pred CCCCcCCCC--CCCCCcceEeeccCc
Q 044085 1092 PNLISLPKN--GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1092 ~~l~~l~~~--~~~~sL~~L~i~~c~ 1115 (1151)
+++.+|.. ...++|+.|++++||
T Consensus 484 -~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 484 -QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp -CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred -CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 78888875 346799999999976
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.6e-30 Score=312.99 Aligned_cols=491 Identities=17% Similarity=0.139 Sum_probs=318.4
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccc-cccccCCccCeeec
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLF-PDIGNLTNLRHLKN 633 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~l 633 (1151)
+...+.+.+++.++.+|..+. ++|++|+|++|.++.+ |..+.++++|++|++++| .+..++ ..|..+++|++|++
T Consensus 5 ~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp CTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEEC
Confidence 334456888899999998775 7999999999999977 677999999999999999 555555 67999999999999
Q ss_pred CCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEe
Q 044085 634 SHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 713 (1151)
Q Consensus 634 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 713 (1151)
++|.+.+..|..++++++|++|++..+....... ...+.++++|+.|+++.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------------~~~~~~l~~L~~L~L~~ 132 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV-----------------------------TSLFPNLTNLQTLRIGN 132 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCS-----------------------------SCSCTTCTTCCEEEEEE
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccch-----------------------------hhhhhccCCccEEECCC
Confidence 9999665555569999999999876654321100 01244566777777777
Q ss_pred cCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCC-CCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcc
Q 044085 714 GDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAK-LPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLK 791 (1151)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 791 (1151)
|..... .....+..+++|+.|++++|.... .|.++. .+++|+.|++++|....... .++.+++|+
T Consensus 133 n~~~~~-----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 133 VETFSE-----------IRRIDFAGLTSLNELEIKALSLRNYQSQSLK--SIRDIHHLTLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp SSSCCE-----------ECTTTTTTCCEEEEEEEEETTCCEECTTTTT--TCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred Cccccc-----------cCHhhhhcccccCeeeccCCcccccChhhhh--ccccCceEecccCcccccchhhHhhccccc
Confidence 653210 001234456667777777766554 444554 36667777777666532211 224466777
Q ss_pred eeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCC
Q 044085 792 NLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQ 871 (1151)
Q Consensus 792 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~ 871 (1151)
.|++++|...... +........+++|+.|.+.++.--.... ...+..+..+++|+.|++++| .+.+ ++.
T Consensus 200 ~L~L~~n~l~~~~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~l~~~~~~~~~L~~l~l~~~-~~~~-~~~ 268 (549)
T 2z81_A 200 YLELRDTNLARFQ---FSPLPVDEVSSPMKKLAFRGSVLTDESF------NELLKLLRYILELSEVEFDDC-TLNG-LGD 268 (549)
T ss_dssp EEEEESCBCTTCC---CCCCSSCCCCCCCCEEEEESCEEEHHHH------HHHHGGGGGCTTCCEEEEESC-EEEC-CSC
T ss_pred EEEccCCcccccc---ccccchhhhhhcccceeccccccchhHH------HHHHHHhhhhccccccccccc-cccc-ccc
Confidence 7777766432210 0000011124555555554332100000 001112234455555555553 2221 110
Q ss_pred CCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCC
Q 044085 872 RFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGS 951 (1151)
Q Consensus 872 ~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n 951 (1151)
++.. .......+++|+.+.+.++...... ....++..+..+++|+.|++++|
T Consensus 269 -~~~~----------~~~~~~~l~~L~~L~l~~~~i~~~~-----------------~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 269 -FNPS----------ESDVVSELGKVETVTIRRLHIPQFY-----------------LFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp -CCCC----------TTTCCCCCTTCCEEEEESCBCSCGG-----------------GSCCCCHHHHHSTTCCEEEEESS
T ss_pred -cccc----------chhhhhhhcccccccccccccchhh-----------------hcccchhhhhhcccceEEEeccC
Confidence 0000 0012244677888888775321100 00112222334678999999999
Q ss_pred ccccccCCCC--CCCccEEEEcCCCCcccCc---cccCCCCccceeeecCCCCCccCC--CCCCCCCCccEEEecCCCcc
Q 044085 952 RLVSFAEGGL--PSNLCSLTLFGCRYLTALP---NGIYNLSSLQHLEIRACPRIASIP--EEVGFPPNITELHIEGPNIC 1024 (1151)
Q Consensus 952 ~l~~~~~~~~--~~~L~~L~L~~n~~~~~l~---~~l~~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~Ls~n~l~ 1024 (1151)
.+..+|...+ .++|+.|++++|.+.+.+| ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++
T Consensus 321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 9998876543 4699999999999988664 347889999999999998875422 34678999999999999999
Q ss_pred ccccccCCCCCCCcceEEeccCCCCcccccC-CCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCCcCCCCCCC
Q 044085 1025 KLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK-LPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLISLPKNGLP 1103 (1151)
Q Consensus 1025 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~~~~~ 1103 (1151)
.++. .+..+++|+.|++++|.. ..++. +|.+|+.|++++| +++.++ ..+++|++|++++| ++..+|..+.+
T Consensus 401 ~lp~--~~~~~~~L~~L~Ls~N~l--~~l~~~~~~~L~~L~Ls~N-~l~~~~--~~l~~L~~L~Ls~N-~l~~ip~~~~l 472 (549)
T 2z81_A 401 PMPD--SCQWPEKMRFLNLSSTGI--RVVKTCIPQTLEVLDVSNN-NLDSFS--LFLPRLQELYISRN-KLKTLPDASLF 472 (549)
T ss_dssp CCCS--CCCCCTTCCEEECTTSCC--SCCCTTSCTTCSEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSSCCCGGGC
T ss_pred cCCh--hhcccccccEEECCCCCc--ccccchhcCCceEEECCCC-Chhhhc--ccCChhcEEECCCC-ccCcCCCcccC
Confidence 7664 477899999999999643 33333 5679999999996 566654 68899999999999 78899987778
Q ss_pred CCcceEeeccCchHHHhhhhcCcccccccccCeEEeCCe
Q 044085 1104 PSLVYVDIYSCPYLEERCKVKGVYWHLVADIPYVRLNGG 1142 (1151)
Q Consensus 1104 ~sL~~L~i~~c~~L~~~~~~~g~~~~~i~~i~~~~~~~~ 1142 (1151)
++|+.|++++|.- +. ...........+..+.+.++
T Consensus 473 ~~L~~L~Ls~N~l-~~---~~~~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 473 PVLLVMKISRNQL-KS---VPDGIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp TTCCEEECCSSCC-CC---CCTTGGGGCTTCCEEECCSS
T ss_pred ccCCEEecCCCcc-CC---cCHHHHhcCcccCEEEecCC
Confidence 9999999999842 21 11111234455666666554
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=309.25 Aligned_cols=425 Identities=15% Similarity=0.143 Sum_probs=279.8
Q ss_pred CCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccccc-CccccCCCcccEEEcccccccccchhhhcCCC
Q 044085 525 EYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQL-PNDIGELKHLRYLEFSRTAIEVLPESVSTLYN 603 (1151)
Q Consensus 525 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~ 603 (1151)
++++.|.+..+.. ...++..|..+++|++|+|++|.++.+ |..|+++++|++|+|++|.|+.+|.. .+++
T Consensus 21 ~~L~~L~Ls~n~i-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 21 QKTTILNISQNYI-------SELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp TTCSEEECCSSCC-------CCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccEEECCCCcc-------cccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 7899998876641 334556789999999999999999988 68999999999999999999999987 8999
Q ss_pred CcEEeccccccccc--cccccccCCccCeeecCCCCccccCcccccCccCC--CccCeeEeccCCC-CCccccccccccc
Q 044085 604 LQTLILERCYRLKK--LFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSL--RTLAKFAVGKSNC-SGLRELRSLTLLQ 678 (1151)
Q Consensus 604 L~~L~L~~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~~~~-~~l~~L~~L~~l~ 678 (1151)
|++|++++| .+.. +|..++++++|++|++++|.+.. ..++.+++| +.|++..+..... .....+
T Consensus 92 L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l------- 160 (520)
T 2z7x_B 92 LKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGL------- 160 (520)
T ss_dssp CSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT-------
T ss_pred ccEEeccCC-ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccc-------
Confidence 999999999 5554 67899999999999999998543 346666666 6666555432100 000000
Q ss_pred CcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCC-CCCc
Q 044085 679 DKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGA-KLPT 757 (1151)
Q Consensus 679 ~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~ 757 (1151)
..+.. +.+ .+.+.++... .++.
T Consensus 161 ----------------------~~l~~-~~l----------------------------------~l~l~~n~~~~~~~~ 183 (520)
T 2z7x_B 161 ----------------------QDFNT-ESL----------------------------------HIVFPTNKEFHFILD 183 (520)
T ss_dssp ----------------------TTCCE-EEE----------------------------------EEECCSSSCCCCCCC
T ss_pred ----------------------ccccc-ceE----------------------------------EEEeccCcchhhhhh
Confidence 00000 111 1222222211 2222
Q ss_pred ccCCCCCCCeeEEEEecCC-------CCCCCCCCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccch
Q 044085 758 WLGQSSFKNLVVLRFRNCN-------QCTSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQE 830 (1151)
Q Consensus 758 ~~~~~~~~~L~~L~L~~~~-------~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 830 (1151)
... ..+++|+.|++++|. +.+.++.++.+++|+.|++++|............ ....++|++|+++++.
T Consensus 184 ~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---~~~~~~L~~L~l~~n~- 258 (520)
T 2z7x_B 184 VSV-KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---LVWHTTVWYFSISNVK- 258 (520)
T ss_dssp CCC-TTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH---HHHTSSCSEEEEEEEE-
T ss_pred hhh-hcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHH---HhhhCcccEEEeeccc-
Confidence 222 247788888888876 3334456777888888888876422111100000 0013578888877432
Q ss_pred hhhhhcccCCCCCccccc-----ccCCcccEEEeccCcCcccCCCC-C------CCCccEEEEccccCccccC-CCCCCc
Q 044085 831 LEEWISHAGTAGGDQEAA-----KGFHSLRELSIINCSKLKGRLPQ-R------FSSLERVVIRSCEQLLVSY-TALPPL 897 (1151)
Q Consensus 831 l~~~~~~~~~~~~~~~~~-----~~l~~L~~L~l~~c~~L~~~~p~-~------l~~L~~L~l~~~~~l~~~~-~~~~~L 897 (1151)
+.+..|..+ ..+++|+.+++++ +.+ .+|. . -.+|+.|++.++....... ..+++|
T Consensus 259 ---------l~~~~p~~~~~~~~~~l~~L~~l~l~~-n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L 326 (520)
T 2z7x_B 259 ---------LQGQLDFRDFDYSGTSLKALSIHQVVS-DVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF 326 (520)
T ss_dssp ---------EESCCCCCCCCCCSCCCCEEEEEEEEE-CCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred ---------ccCccccchhhcccccCceeEeccccc-cce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence 233344444 6788899999988 454 3452 1 1458888888877555443 556777
Q ss_pred ceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccC----CCCCCCccEEEEcCC
Q 044085 898 CELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAE----GGLPSNLCSLTLFGC 973 (1151)
Q Consensus 898 ~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~----~~~~~~L~~L~L~~n 973 (1151)
+.|+++++..- ..+|..+.++++|+.|++++|.++.++. ..-.++|+.|++++|
T Consensus 327 ~~L~Ls~n~l~----------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 327 LHLDFSNNLLT----------------------DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp CEEECCSSCCC----------------------TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred cEEEeECCccC----------------------hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 77777765321 2345566777888888888887775432 112257788888888
Q ss_pred CCcccCccc-cCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCccc
Q 044085 974 RYLTALPNG-IYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVS 1052 (1151)
Q Consensus 974 ~~~~~l~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 1052 (1151)
.+.+.+|.. +..+++|++|++++|.+.+.+|..+. ++|+.|++++|.++.++.. +.++++|+.|++++
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~--~~~l~~L~~L~L~~------- 453 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ--VVKLEALQELNVAS------- 453 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG--GGGCTTCCEEECCS-------
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh--hhcCCCCCEEECCC-------
Confidence 777655543 66777888888888877766665432 6788888888877765543 33677777777776
Q ss_pred ccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCC
Q 044085 1053 FQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECP 1092 (1151)
Q Consensus 1053 ~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 1092 (1151)
+.++.+| .+..+++|++|++++|+
T Consensus 454 ----------------N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 454 ----------------NQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp ----------------SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ----------------CcCCccCHHHhccCCcccEEECcCCC
Confidence 3566666 37889999999999996
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=7e-31 Score=320.70 Aligned_cols=353 Identities=15% Similarity=0.169 Sum_probs=221.5
Q ss_pred ccccccCccccCCCcccEEEcccccccc------------------cchhhh--cCCCCcEEeccccccccccccccccC
Q 044085 566 YWILQLPNDIGELKHLRYLEFSRTAIEV------------------LPESVS--TLYNLQTLILERCYRLKKLFPDIGNL 625 (1151)
Q Consensus 566 ~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~~~~L 625 (1151)
|.++.+|..|+++++|++|+|++|.++. +|..++ ++++|++|++++|.....+|..+.++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 4566688889999999999999999887 898888 99999999999987778888889999
Q ss_pred CccCeeecCCCC-ccc-cCcccccCc------cCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHH
Q 044085 626 TNLRHLKNSHSN-LFE-EMPLRIGKL------TSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKE 697 (1151)
Q Consensus 626 ~~L~~L~l~~~~-~~~-~~p~~i~~L------~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~ 697 (1151)
++|++|++++|. +.+ .+|..++++ ++|++|++..+....... .
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~-----------------------------~ 323 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV-----------------------------E 323 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC-----------------------------H
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc-----------------------------h
Confidence 999999999997 666 788888776 677776654443211000 0
Q ss_pred HhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCC-eeEEEEecCC
Q 044085 698 AQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKN-LVVLRFRNCN 776 (1151)
Q Consensus 698 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~L~~~~ 776 (1151)
..+..+++|+.|+++.|.... .+..+..+++|+.|++++|....+|.++.. +++ |+.|++++|.
T Consensus 324 ~~l~~l~~L~~L~L~~N~l~g-------------~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 324 TSLQKMKKLGMLECLYNQLEG-------------KLPAFGSEIKLASLNLAYNQITEIPANFCG--FTEQVENLSFAHNK 388 (636)
T ss_dssp HHHTTCTTCCEEECCSCCCEE-------------ECCCCEEEEEESEEECCSSEEEECCTTSEE--ECTTCCEEECCSSC
T ss_pred hhhccCCCCCEEeCcCCcCcc-------------chhhhCCCCCCCEEECCCCccccccHhhhh--hcccCcEEEccCCc
Confidence 023344455555555544320 001233344555555555555555555442 455 6666666655
Q ss_pred CCCCCC-CCCCC--CCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccc----
Q 044085 777 QCTSLP-SVGHL--PSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAK---- 849 (1151)
Q Consensus 777 ~~~~l~-~l~~l--~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~---- 849 (1151)
+. .+| .++.+ ++|+.|++++|..... .|..+.
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~----------------------------------------~p~~l~~~~~ 427 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSV----------------------------------------DGKNFDPLDP 427 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTT----------------------------------------TTCSSCTTCS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCc----------------------------------------chhhhccccc
Confidence 54 333 33332 2555555555543222 222222
Q ss_pred ---cCCcccEEEeccCcCcccCCCC----CCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccC
Q 044085 850 ---GFHSLRELSIINCSKLKGRLPQ----RFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLP 922 (1151)
Q Consensus 850 ---~l~~L~~L~l~~c~~L~~~~p~----~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~ 922 (1151)
.+++|+.|++++ ++++ .+|. .+++|+.|++.++....+....+
T Consensus 428 ~~~~~~~L~~L~Ls~-N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~---------------------------- 477 (636)
T 4eco_A 428 TPFKGINVSSINLSN-NQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSL---------------------------- 477 (636)
T ss_dssp SCCCCCCEEEEECCS-SCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSS----------------------------
T ss_pred ccccCCCCCEEECcC-CccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHh----------------------------
Confidence 455666666666 4555 4443 23444444444332211100000
Q ss_pred cccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCC---CCCccEEEEcCCCCcccCccccCCCCccceeee-----
Q 044085 923 WEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGL---PSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEI----- 994 (1151)
Q Consensus 923 ~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~---~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L----- 994 (1151)
...+..+.++++|+.|++++|.++.+|.... .++|+.|+|++|.+.+ +|..+..+++|++|++
T Consensus 478 --------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ 548 (636)
T 4eco_A 478 --------KDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRD 548 (636)
T ss_dssp --------EETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBC
T ss_pred --------ccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcc
Confidence 0001112345588888888888887776543 3688888888888877 7788888888888888
Q ss_pred -cCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 995 -RACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 995 -~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
++|.+.+.+|..+..+++|+.|+|++|.++.++.. +. ++|+.|++++|
T Consensus 549 ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~--~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK--IT--PNISVLDIKDN 597 (636)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC--CC--TTCCEEECCSC
T ss_pred cccCcccccChHHHhcCCCCCEEECCCCcCCccCHh--Hh--CcCCEEECcCC
Confidence 45667777888888888888888888888666543 22 78888888884
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=5.1e-30 Score=316.63 Aligned_cols=355 Identities=15% Similarity=0.152 Sum_probs=204.1
Q ss_pred ccccccCccccCCCcccEEEcccccccc------------------cchhhh--cCCCCcEEeccccccccccccccccC
Q 044085 566 YWILQLPNDIGELKHLRYLEFSRTAIEV------------------LPESVS--TLYNLQTLILERCYRLKKLFPDIGNL 625 (1151)
Q Consensus 566 ~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~------------------lp~~i~--~L~~L~~L~L~~~~~l~~lp~~~~~L 625 (1151)
|.++.+|..|+++++|++|+|++|.++. +|..++ ++++|++|+|++|.....+|..+.++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666689899999999999999999998 899877 99999999999997788899999999
Q ss_pred CccCeeecCCCC-ccc-cCcccccCcc-------CCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHH
Q 044085 626 TNLRHLKNSHSN-LFE-EMPLRIGKLT-------SLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAK 696 (1151)
Q Consensus 626 ~~L~~L~l~~~~-~~~-~~p~~i~~L~-------~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~ 696 (1151)
++|++|++++|. +.+ .+|..+++++ +|+.|++..+.......
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~----------------------------- 565 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA----------------------------- 565 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-----------------------------
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-----------------------------
Confidence 999999999997 666 6888777665 55555443332110000
Q ss_pred HHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCC-eeEEEEecC
Q 044085 697 EAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKN-LVVLRFRNC 775 (1151)
Q Consensus 697 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~-L~~L~L~~~ 775 (1151)
...+.++++|+.|+++.|.+.. +..+..+++|+.|++++|....+|.++.. +++ |+.|+|++|
T Consensus 566 ~~~l~~L~~L~~L~Ls~N~l~~--------------lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHNKVRH--------------LEAFGTNVKLTDLKLDYNQIEEIPEDFCA--FTDQVEGLGFSHN 629 (876)
T ss_dssp HHHHTTCTTCCEEECTTSCCCB--------------CCCCCTTSEESEEECCSSCCSCCCTTSCE--ECTTCCEEECCSS
T ss_pred hhhhhcCCCCCEEECCCCCccc--------------chhhcCCCcceEEECcCCccccchHHHhh--ccccCCEEECcCC
Confidence 0012333444444444443210 01233344444444444444444444332 344 444444444
Q ss_pred CCCCCCC-CCCCCC--CcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccc--c
Q 044085 776 NQCTSLP-SVGHLP--SLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAK--G 850 (1151)
Q Consensus 776 ~~~~~l~-~l~~l~--~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~--~ 850 (1151)
.+. .+| .+..++ +|+.|++++|.....++. .+..+. .
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-------------------------------------l~~~l~~~~ 671 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-------------------------------------ISCSMDDYK 671 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-------------------------------------CSSCTTTCC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCcccc-------------------------------------chhhhcccc
Confidence 443 223 222222 244444444432111100 000111 2
Q ss_pred CCcccEEEeccCcCcccCCCC----CCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccC
Q 044085 851 FHSLRELSIINCSKLKGRLPQ----RFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEIS 926 (1151)
Q Consensus 851 l~~L~~L~l~~c~~L~~~~p~----~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~ 926 (1151)
+++|+.|++++ +.++ .+|. .+++|+.|++.++....+....+
T Consensus 672 ~~~L~~L~Ls~-N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~-------------------------------- 717 (876)
T 4ecn_A 672 GINASTVTLSY-NEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSL-------------------------------- 717 (876)
T ss_dssp CCCEEEEECCS-SCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSS--------------------------------
T ss_pred CCCcCEEEccC-CcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHh--------------------------------
Confidence 33566666665 3444 3442 23344444443332110000000
Q ss_pred CCCCCCCccccCCCCCccEEEEeCCccccccCCCC---CCCccEEEEcCCCCcccCccccCCCCccceeeecC------C
Q 044085 927 IPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGL---PSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRA------C 997 (1151)
Q Consensus 927 ~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~---~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~------~ 997 (1151)
...+..+.+|++|+.|+|++|+++.+|.... .++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |
T Consensus 718 ----~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 718 ----KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp ----SCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred ----ccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 0000112344577777777777777665432 2577777887777766 677777777888887765 5
Q ss_pred CCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 998 PRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 998 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
.+.+.+|..+..+++|+.|+|++|.+..++.. + .++|+.|+|++|
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~--l--~~~L~~LdLs~N 837 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDIRKVDEK--L--TPQLYILDIADN 837 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCCBCCSC--C--CSSSCEEECCSC
T ss_pred cccccChHHHhcCCCCCEEECCCCCCCccCHh--h--cCCCCEEECCCC
Confidence 66667777777778888888888877655543 2 257778888774
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1e-28 Score=287.61 Aligned_cols=403 Identities=20% Similarity=0.179 Sum_probs=228.4
Q ss_pred CCcccEEEecCccccccCccccCCCcccEEEccccccc-ccchhhhcCCCC-------------cEEecccccccccccc
Q 044085 555 LRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIE-VLPESVSTLYNL-------------QTLILERCYRLKKLFP 620 (1151)
Q Consensus 555 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~-~lp~~i~~L~~L-------------~~L~L~~~~~l~~lp~ 620 (1151)
.+.|++|++++|.+..+|.+|+++++|++|++++|.+. .+|.+++.+++| ++|++++| .+..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCC
Confidence 47899999999999999999999999999999999988 789999988876 88888887 5666665
Q ss_pred ccccCCccCeeecCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhc
Q 044085 621 DIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQL 700 (1151)
Q Consensus 621 ~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l 700 (1151)
. .++|++|++++|.+. .+|.. +++|+.|++..+.......
T Consensus 89 ~---~~~L~~L~l~~n~l~-~lp~~---~~~L~~L~l~~n~l~~l~~--------------------------------- 128 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALSD--------------------------------- 128 (454)
T ss_dssp C---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCCS---------------------------------
T ss_pred C---cCCCCEEEccCCcCC-ccccc---cCCCcEEECCCCccCcccC---------------------------------
Confidence 2 367888888888744 36643 3566666554432211100
Q ss_pred CCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCC
Q 044085 701 NGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTS 780 (1151)
Q Consensus 701 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~ 780 (1151)
..++|+.|+++.|.... +..+..+++|+.|++++|....+|.+ .++|+.|++++|.+..
T Consensus 129 -~~~~L~~L~L~~n~l~~--------------lp~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~- 187 (454)
T 1jl5_A 129 -LPPLLEYLGVSNNQLEK--------------LPELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE- 187 (454)
T ss_dssp -CCTTCCEEECCSSCCSS--------------CCCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-
T ss_pred -CCCCCCEEECcCCCCCC--------------CcccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-
Confidence 01467777777765522 12366678888888888888777754 3488889998888755
Q ss_pred CCCCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEec
Q 044085 781 LPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSII 860 (1151)
Q Consensus 781 l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 860 (1151)
+|.++.+++|+.|++++|... .++. ..++|++|+++++ .+. ..| .+..+++|++|+++
T Consensus 188 l~~~~~l~~L~~L~l~~N~l~-~l~~---------~~~~L~~L~l~~n----------~l~-~lp-~~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 188 LPELQNLPFLTAIYADNNSLK-KLPD---------LPLSLESIVAGNN----------ILE-ELP-ELQNLPFLTTIYAD 245 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCS-SCCC---------CCTTCCEEECCSS----------CCS-SCC-CCTTCTTCCEEECC
T ss_pred CccccCCCCCCEEECCCCcCC-cCCC---------CcCcccEEECcCC----------cCC-ccc-ccCCCCCCCEEECC
Confidence 667888888999988888532 2221 1457888877643 222 233 36678888888888
Q ss_pred cCcCcccCCCCCCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCC
Q 044085 861 NCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKL 940 (1151)
Q Consensus 861 ~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l 940 (1151)
+ ++++ .+|..+++|+.|++.++.. ..+|.. +
T Consensus 246 ~-N~l~-~l~~~~~~L~~L~l~~N~l--------------------------------------------~~l~~~---~ 276 (454)
T 1jl5_A 246 N-NLLK-TLPDLPPSLEALNVRDNYL--------------------------------------------TDLPEL---P 276 (454)
T ss_dssp S-SCCS-SCCSCCTTCCEEECCSSCC--------------------------------------------SCCCCC---C
T ss_pred C-CcCC-cccccccccCEEECCCCcc--------------------------------------------cccCcc---c
Confidence 8 5777 4665555555555544331 122222 3
Q ss_pred CCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCC-CccceeeecCCCCCccCCCCCCCCCCccEEEec
Q 044085 941 SHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNL-SSLQHLEIRACPRIASIPEEVGFPPNITELHIE 1019 (1151)
Q Consensus 941 ~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls 1019 (1151)
++|+.|++++|.++.++. +|++|+.|++++|.+.+ ++ .+ ++|++|++++|.+.+ +|. .+++|+.|+++
T Consensus 277 ~~L~~L~ls~N~l~~l~~--~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~ 345 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPA---LPPRLERLIAS 345 (454)
T ss_dssp TTCCEEECCSSCCSEESC--CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CcCCEEECcCCccCcccC--cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccc---cCCcCCEEECC
Confidence 678888888888877653 45688888888888765 22 23 488888888888775 554 35888889998
Q ss_pred CCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCCcCCC
Q 044085 1020 GPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLISLPK 1099 (1151)
Q Consensus 1020 ~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~ 1099 (1151)
+|.++.++. .+++|+.|++++| ....++.+|.++..|... .....++. .+++|+.|++++| .+..+|.
T Consensus 346 ~N~l~~lp~-----~l~~L~~L~L~~N--~l~~l~~ip~~l~~L~~n--~~~~~i~~--~~~~L~~L~ls~N-~l~~~~~ 413 (454)
T 1jl5_A 346 FNHLAEVPE-----LPQNLKQLHVEYN--PLREFPDIPESVEDLRMN--SHLAEVPE--LPQNLKQLHVETN-PLREFPD 413 (454)
T ss_dssp SSCCSCCCC-----CCTTCCEEECCSS--CCSSCCCCCTTCCEEECC--C------------------------------
T ss_pred CCccccccc-----hhhhccEEECCCC--CCCcCCCChHHHHhhhhc--cccccccc--ccCcCCEEECCCC-cCCcccc
Confidence 888886653 4678888888874 445556677777777543 22333442 3589999999998 5665554
Q ss_pred CCCCCCcceEeeccCc
Q 044085 1100 NGLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1100 ~~~~~sL~~L~i~~c~ 1115 (1151)
.|++|+.|.+.+|.
T Consensus 414 --iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 414 --IPESVEDLRMNSER 427 (454)
T ss_dssp ----------------
T ss_pred --chhhHhheeCcCcc
Confidence 67889999988874
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=1.6e-27 Score=294.91 Aligned_cols=496 Identities=19% Similarity=0.162 Sum_probs=248.6
Q ss_pred CccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccC-ccccCCCcccEEEcccccccccch-hhhcCCC
Q 044085 526 YLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVLPE-SVSTLYN 603 (1151)
Q Consensus 526 ~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~ 603 (1151)
.++.|.+..+. ...+++..|.++++|++|+|++|.|+.+| ..|.++++|++|+|++|+|+.+|. .|.+|++
T Consensus 53 ~~~~LdLs~N~-------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNP-------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSC-------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CCCEEEeeCCC-------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 56666665443 13344556777888888888888877775 457778888888888888887764 4777888
Q ss_pred CcEEecccccccccccc-ccccCCccCeeecCCCCccc-cCcccccCccCCCccCeeEeccCCC--CCcccccccccccC
Q 044085 604 LQTLILERCYRLKKLFP-DIGNLTNLRHLKNSHSNLFE-EMPLRIGKLTSLRTLAKFAVGKSNC--SGLRELRSLTLLQD 679 (1151)
Q Consensus 604 L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~--~~l~~L~~L~~l~~ 679 (1151)
|++|++++| .+..+|. .|+++++|++|++++|.+.. ..|..++.+++|++|++..+..... ..+..+..+.....
T Consensus 126 L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 126 LQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp CCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 888888877 5666655 37778888888888777533 3566677777888777665544321 12222222221110
Q ss_pred cEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCC---CCC
Q 044085 680 KLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGA---KLP 756 (1151)
Q Consensus 680 ~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~---~~p 756 (1151)
.+... ...+... .........+..+.+..+... . .... ..+.....++...+...... .+.
T Consensus 205 ~~~ls-~n~l~~i----~~~~~~~~~~~~l~l~~n~~~-----~---~~~~---~~~~~l~~l~~~~l~~~~~~~~~~l~ 268 (635)
T 4g8a_A 205 SLDLS-LNPMNFI----QPGAFKEIRLHKLTLRNNFDS-----L---NVMK---TCIQGLAGLEVHRLVLGEFRNEGNLE 268 (635)
T ss_dssp EEECT-TCCCCEE----CTTTTTTCEEEEEEEESCCSS-----H---HHHH---HHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhcc-cCccccc----Ccccccchhhhhhhhhccccc-----c---cccc---hhhcCCcccccccccccccccccccc
Confidence 11000 0000000 000111122333444333210 0 0000 11112223333322221110 000
Q ss_pred cccC--CCCCCCeeEEEEecCCCCCC----CCCCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccch
Q 044085 757 TWLG--QSSFKNLVVLRFRNCNQCTS----LPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQE 830 (1151)
Q Consensus 757 ~~~~--~~~~~~L~~L~L~~~~~~~~----l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 830 (1151)
.... ......+..+.+..+..... ...+..+.+++.+.+.++......... ...+|+.|.+.++..
T Consensus 269 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--------~~~~L~~L~l~~~~~ 340 (635)
T 4g8a_A 269 KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFS--------YNFGWQHLELVNCKF 340 (635)
T ss_dssp CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGG--------SCCCCSEEEEESCEE
T ss_pred cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccc--------cchhhhhhhcccccc
Confidence 0000 00122334444333322111 113334455555555544321111110 133444444443210
Q ss_pred hhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCC-CCCCCccEEEEccccCccc-----cCCCCCCcceEEEcC
Q 044085 831 LEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLP-QRFSSLERVVIRSCEQLLV-----SYTALPPLCELAIDG 904 (1151)
Q Consensus 831 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p-~~l~~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~ 904 (1151)
..+. ...++.|+.+++.. +......+ ..+++|+.|++.++..... ......+|+.+++..
T Consensus 341 -------~~~~------~~~l~~L~~l~l~~-n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~ 406 (635)
T 4g8a_A 341 -------GQFP------TLKLKSLKRLTFTS-NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSF 406 (635)
T ss_dssp -------SSCC------CCBCTTCCEEEEES-CCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCS
T ss_pred -------cCcC------cccchhhhhccccc-ccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccc
Confidence 0000 01244445555444 22221111 1234444444443322111 111233444444443
Q ss_pred CCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCC-CC--CCCccEEEEcCCCCcccCcc
Q 044085 905 FWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEG-GL--PSNLCSLTLFGCRYLTALPN 981 (1151)
Q Consensus 905 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~-~~--~~~L~~L~L~~n~~~~~l~~ 981 (1151)
+.. ..++..+..+++|+.+++++++....... .+ ..+++.+++++|.+....+.
T Consensus 407 ~~~-----------------------~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~ 463 (635)
T 4g8a_A 407 NGV-----------------------ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 463 (635)
T ss_dssp CSE-----------------------EEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ccc-----------------------ccccccccccccccchhhhhcccccccccccccccccccccccccccccccccc
Confidence 321 12233445567777777776655443322 12 14677777777777666666
Q ss_pred ccCCCCccceeeecCCCCCc-cCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCc
Q 044085 982 GIYNLSSLQHLEIRACPRIA-SIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSL 1060 (1151)
Q Consensus 982 ~l~~l~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L 1060 (1151)
.+..+++|+.|++++|.... ..|..+..+++|++|+|++|.++++++. .|.++++|+.|+|++
T Consensus 464 ~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~-~f~~l~~L~~L~Ls~--------------- 527 (635)
T 4g8a_A 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSH--------------- 527 (635)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTT---------------
T ss_pred ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH-HHcCCCCCCEEECCC---------------
Confidence 66777777777777776443 3566667777777777777777766544 366777777777776
Q ss_pred ceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCcCCCC---CCCCCcceEeeccCc
Q 044085 1061 VKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLISLPKN---GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1061 ~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~---~~~~sL~~L~i~~c~ 1115 (1151)
++++.++ .+.++++|++|+|++| ++..++.. .++++|+.|+++++|
T Consensus 528 --------N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 528 --------NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp --------SCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred --------CcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 3455554 4667788888888887 56666554 234678888887654
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.1e-27 Score=289.69 Aligned_cols=425 Identities=17% Similarity=0.129 Sum_probs=256.6
Q ss_pred CCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCcccccc-CccccCCCcccEEEcccccccccchhhhcCCC
Q 044085 525 EYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQL-PNDIGELKHLRYLEFSRTAIEVLPESVSTLYN 603 (1151)
Q Consensus 525 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~ 603 (1151)
+++++|.+..+.. ...++..|..+++|++|+|++|.++.+ |..|.++++|++|+|++|.|+.+|.. .+++
T Consensus 52 ~~L~~L~Ls~N~i-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 52 PRTKALSLSQNSI-------SELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp TTCCEEECCSSCC-------CCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCcCEEECCCCCc-------cccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 7899998876642 344557889999999999999999988 58899999999999999999999987 8999
Q ss_pred CcEEecccccccccc--ccccccCCccCeeecCCCCccccCcccccCccCC--CccCeeEecc--CCCCCcccccccccc
Q 044085 604 LQTLILERCYRLKKL--FPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSL--RTLAKFAVGK--SNCSGLRELRSLTLL 677 (1151)
Q Consensus 604 L~~L~L~~~~~l~~l--p~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~--~~~~~l~~L~~L~~l 677 (1151)
|++|++++| .+..+ |..+.++++|++|++++|.+.. ..+..+++| +.|++..+.. ... ....+..+..
T Consensus 123 L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~-~~~~l~~l~~- 196 (562)
T 3a79_B 123 LRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGG-ETESLQIPNT- 196 (562)
T ss_dssp CSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSS-SCCEEEECCE-
T ss_pred CCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEeeccccccccc-CcccccccCc-
Confidence 999999999 66665 4789999999999999998543 235555555 7776655543 110 0011111100
Q ss_pred cCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCc
Q 044085 678 QDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPT 757 (1151)
Q Consensus 678 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~ 757 (1151)
..+ .+.+..|.... .++.
T Consensus 197 --------------------------~~l-~l~l~~n~~~~-----------------------------------~~~~ 214 (562)
T 3a79_B 197 --------------------------TVL-HLVFHPNSLFS-----------------------------------VQVN 214 (562)
T ss_dssp --------------------------EEE-EEEECSSSCCC-----------------------------------CCCE
T ss_pred --------------------------ceE-EEEecCccchh-----------------------------------hhhh
Confidence 000 11222222110 1111
Q ss_pred ccCCCCCCCeeEEEEecCCCC-----CCCCCCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhh
Q 044085 758 WLGQSSFKNLVVLRFRNCNQC-----TSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELE 832 (1151)
Q Consensus 758 ~~~~~~~~~L~~L~L~~~~~~-----~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 832 (1151)
... ..+++|+.|++++|... ..++.+..+++|+.|.+.++........... .....++|++|+++++.
T Consensus 215 ~~~-~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~---~~~~~~~L~~L~l~~n~--- 287 (562)
T 3a79_B 215 MSV-NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF---QFFWPRPVEYLNIYNLT--- 287 (562)
T ss_dssp EEE-SSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH---HHHTTSSEEEEEEEEEE---
T ss_pred hcc-cccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH---HhhhcccccEEEEeccE---
Confidence 111 13445555555555310 1111234445555555544321100000000 00002355555554322
Q ss_pred hhhcccCCCCCccccc-----ccCCcccEEEeccCcCcccCCCC-------CCCCccEEEEccccCccccC-CCCCCcce
Q 044085 833 EWISHAGTAGGDQEAA-----KGFHSLRELSIINCSKLKGRLPQ-------RFSSLERVVIRSCEQLLVSY-TALPPLCE 899 (1151)
Q Consensus 833 ~~~~~~~~~~~~~~~~-----~~l~~L~~L~l~~c~~L~~~~p~-------~l~~L~~L~l~~~~~l~~~~-~~~~~L~~ 899 (1151)
+.+..|..+ ..++.|+.+++.. +.+ .+|. .-.+|+.|++.++....... ..+++|+.
T Consensus 288 -------l~~~ip~~~~~~~~~~L~~L~~~~~~~-~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~ 357 (562)
T 3a79_B 288 -------ITERIDREEFTYSETALKSLMIEHVKN-QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357 (562)
T ss_dssp -------ECSCCCCCCCCCCSCSCCEEEEEEEEE-CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCE
T ss_pred -------eeccccchhhhcccccchheehhhccc-cee--ecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceE
Confidence 111222222 2333333334433 222 1221 01345666666555443332 44566666
Q ss_pred EEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccC----CCCCCCccEEEEcCCCC
Q 044085 900 LAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAE----GGLPSNLCSLTLFGCRY 975 (1151)
Q Consensus 900 L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~----~~~~~~L~~L~L~~n~~ 975 (1151)
|+++++... +.+|..+.++++|+.|++++|.++.++. ..-.++|+.|++++|.+
T Consensus 358 L~l~~n~l~----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 358 LNFTQNVFT----------------------DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp EECCSSCCC----------------------TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccc----------------------cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 666665311 2345667778888888888888876543 11225888888888888
Q ss_pred cccCcc-ccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCccccc
Q 044085 976 LTALPN-GIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQ 1054 (1151)
Q Consensus 976 ~~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 1054 (1151)
.+.+|. .+..+++|++|++++|.+.+.+|..+. ++|+.|++++|.++.++.. +.++++|+.|++++
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~--~~~l~~L~~L~L~~--------- 482 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKD--VTHLQALQELNVAS--------- 482 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTT--TTSSCCCSEEECCS---------
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChh--hcCCCCCCEEECCC---------
Confidence 775554 477788888888888888776665433 6888888888888866653 33778888888877
Q ss_pred CCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCC
Q 044085 1055 KLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECP 1092 (1151)
Q Consensus 1055 ~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 1092 (1151)
+.++.+| .+..+++|+.|++++||
T Consensus 483 --------------N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 483 --------------NQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp --------------SCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred --------------CCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 4566666 27889999999999996
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=1.1e-26 Score=273.60 Aligned_cols=100 Identities=20% Similarity=0.320 Sum_probs=58.0
Q ss_pred CCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecC
Q 044085 555 LRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNS 634 (1151)
Q Consensus 555 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 634 (1151)
++.|+.|+++++.+..+|. +..+++|++|+|++|.++.+|. +..+++|++|++++| .+..++. +.++++|++|+++
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECC
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECC
Confidence 3456666666666665553 5556666666666666666554 666666666666666 4444444 6666666666666
Q ss_pred CCCccccCcccccCccCCCccCeeEe
Q 044085 635 HSNLFEEMPLRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L~~~~~ 660 (1151)
+|.+ ..+|. ++++++|++|++..+
T Consensus 121 ~n~l-~~~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 121 NNQI-TDIDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp SSCC-CCCGG-GTTCTTCSEEEEEEE
T ss_pred CCCC-CCChH-HcCCCCCCEEECCCC
Confidence 6653 23332 555555555555444
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=7.4e-27 Score=275.41 Aligned_cols=133 Identities=20% Similarity=0.175 Sum_probs=85.4
Q ss_pred CCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEE
Q 044085 940 LSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELH 1017 (1151)
Q Consensus 940 l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 1017 (1151)
+++|+.|++++|.++.+....+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 35677777777777665444332 4677777777776666666666777777777777766655566666677777777
Q ss_pred ecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCC
Q 044085 1018 IEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLI 1095 (1151)
Q Consensus 1018 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~ 1095 (1151)
|++|.+++..+. .+.++++|+.|++++ +.++.++ .+..+++|++|+|++|+--.
T Consensus 354 Ls~N~l~~~~~~-~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 354 LSYNHIRALGDQ-SFLGLPNLKELALDT-----------------------NQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCSSCCCEECTT-TTTTCTTCCEEECCS-----------------------SCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCcccccChh-hccccccccEEECCC-----------------------CccccCCHhHhccCCcccEEEccCCCccc
Confidence 777776655443 356666666666666 3444444 35677777777777775433
Q ss_pred c
Q 044085 1096 S 1096 (1151)
Q Consensus 1096 ~ 1096 (1151)
.
T Consensus 410 ~ 410 (455)
T 3v47_A 410 S 410 (455)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.8e-26 Score=268.63 Aligned_cols=369 Identities=21% Similarity=0.211 Sum_probs=192.1
Q ss_pred CCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCcc-------------CeeecCCCCccccCc
Q 044085 577 ELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNL-------------RHLKNSHSNLFEEMP 643 (1151)
Q Consensus 577 ~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L-------------~~L~l~~~~~~~~~p 643 (1151)
+..+|++|++++|.+..+|.++++|++|++|++++|...+.+|..++++++| ++|++++|. ...+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 4689999999999999999999999999999999997667899999999887 556665555 23333
Q ss_pred ccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCc
Q 044085 644 LRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSR 723 (1151)
Q Consensus 644 ~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 723 (1151)
.. .+ +|+.|++++|....
T Consensus 88 ~~---~~------------------------------------------------------~L~~L~l~~n~l~~----- 105 (454)
T 1jl5_A 88 EL---PP------------------------------------------------------HLESLVASCNSLTE----- 105 (454)
T ss_dssp SC---CT------------------------------------------------------TCSEEECCSSCCSS-----
T ss_pred CC---cC------------------------------------------------------CCCEEEccCCcCCc-----
Confidence 21 12 34444444433311
Q ss_pred hhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceE
Q 044085 724 EVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKS 803 (1151)
Q Consensus 724 ~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~ 803 (1151)
+. ..+++|+.|++++|....+|.. .++|+.|++++|.+.. +|.++.+++|++|++++|.. ..
T Consensus 106 ---------lp--~~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l-~~ 167 (454)
T 1jl5_A 106 ---------LP--ELPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSL-KK 167 (454)
T ss_dssp ---------CC--CCCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCC-SC
T ss_pred ---------cc--cccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcC-cc
Confidence 00 0125677777777776666542 2578888888888754 66788888888888888753 22
Q ss_pred eCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEcc
Q 044085 804 VGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRS 883 (1151)
Q Consensus 804 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~ 883 (1151)
++. .+++|++|+++++ .+.+ .| .+..+++|+.|++++ ++++ .+|...++|+.|++.+
T Consensus 168 lp~---------~~~~L~~L~L~~n----------~l~~-l~-~~~~l~~L~~L~l~~-N~l~-~l~~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 168 LPD---------LPPSLEFIAAGNN----------QLEE-LP-ELQNLPFLTAIYADN-NSLK-KLPDLPLSLESIVAGN 224 (454)
T ss_dssp CCC---------CCTTCCEEECCSS----------CCSS-CC-CCTTCTTCCEEECCS-SCCS-SCCCCCTTCCEEECCS
T ss_pred cCC---------CcccccEEECcCC----------cCCc-Cc-cccCCCCCCEEECCC-CcCC-cCCCCcCcccEEECcC
Confidence 332 1457888877642 2232 23 467889999999998 5777 4666556666666655
Q ss_pred ccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCCC
Q 044085 884 CEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLPS 963 (1151)
Q Consensus 884 ~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~ 963 (1151)
+... .+| .+.++++|+.|++++|.++.++. .++
T Consensus 225 n~l~--------------------------------------------~lp-~~~~l~~L~~L~l~~N~l~~l~~--~~~ 257 (454)
T 1jl5_A 225 NILE--------------------------------------------ELP-ELQNLPFLTTIYADNNLLKTLPD--LPP 257 (454)
T ss_dssp SCCS--------------------------------------------SCC-CCTTCTTCCEEECCSSCCSSCCS--CCT
T ss_pred CcCC--------------------------------------------ccc-ccCCCCCCCEEECCCCcCCcccc--ccc
Confidence 5322 223 24455666666666666655543 234
Q ss_pred CccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCC-CCcceEE
Q 044085 964 NLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNL-TSVRDLF 1042 (1151)
Q Consensus 964 ~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~ 1042 (1151)
+|+.|++++|.+.+ +|.. +++|++|++++|.+.+ +|. .+++|+.|++++|.++++. .+ ++|+.|+
T Consensus 258 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~---~~~~L~~L~l~~N~l~~i~------~~~~~L~~L~ 323 (454)
T 1jl5_A 258 SLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSE---LPPNLYYLNASSNEIRSLC------DLPPSLEELN 323 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESC---CCTTCCEEECCSSCCSEEC------CCCTTCCEEE
T ss_pred ccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccC---cCCcCCEEECcCCcCCccc------CCcCcCCEEE
Confidence 66666666666544 3322 2556666666665543 221 2355666666666655432 12 3566666
Q ss_pred eccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCCc---CCCC-C-------------CCCC
Q 044085 1043 IKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLIS---LPKN-G-------------LPPS 1105 (1151)
Q Consensus 1043 l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~---l~~~-~-------------~~~s 1105 (1151)
+++|. ...++..+++|+.|++++| .++.+|. .+++|++|++++| .+.. +|.. + .+++
T Consensus 324 Ls~N~--l~~lp~~~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~ 397 (454)
T 1jl5_A 324 VSNNK--LIELPALPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPELPQN 397 (454)
T ss_dssp CCSSC--CSCCCCCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC-----------
T ss_pred CCCCc--cccccccCCcCCEEECCCC-ccccccc--hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccccCc
Confidence 66532 2234444556666666654 4555554 4566666666666 3333 2221 0 2378
Q ss_pred cceEeeccCch
Q 044085 1106 LVYVDIYSCPY 1116 (1151)
Q Consensus 1106 L~~L~i~~c~~ 1116 (1151)
|+.|++++|+-
T Consensus 398 L~~L~ls~N~l 408 (454)
T 1jl5_A 398 LKQLHVETNPL 408 (454)
T ss_dssp -----------
T ss_pred CCEEECCCCcC
Confidence 99999998764
No 32
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=9.4e-27 Score=287.96 Aligned_cols=483 Identities=17% Similarity=0.094 Sum_probs=291.3
Q ss_pred CcccEEEecCccccccC-ccccCCCcccEEEcccccccccch-hhhcCCCCcEEeccccccccccccc-cccCCccCeee
Q 044085 556 RRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVLPE-SVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLK 632 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~ 632 (1151)
+.+++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|. .|.+|++|++|+|++| .+..+|.. |.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 47999999999999997 689999999999999999999965 5999999999999999 78888764 89999999999
Q ss_pred cCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEE
Q 044085 633 NSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK 712 (1151)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 712 (1151)
+++|.+.+..+..|+++++|++|++..+.......- ..+..+++|+.|+++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~-----------------------------~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-----------------------------EYFSNLTNLEHLDLS 181 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC-----------------------------GGGGGCTTCCEEECC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCc-----------------------------hhhccchhhhhhccc
Confidence 999996544444589999999998776654321110 123345567777777
Q ss_pred ecCCCCCCCCchhhHHHHhHhhccCCC-CCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC--CCCCCCC
Q 044085 713 WGDKTTNSDSREVAEIQTRVLEMLKPH-YGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP--SVGHLPS 789 (1151)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~--~l~~l~~ 789 (1151)
.|.+.... ...+..+... .....++++.+....++..... ...+..+.+.++....... .+..++.
T Consensus 182 ~N~l~~~~---------~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~~~~~~~l~~ 250 (635)
T 4g8a_A 182 SNKIQSIY---------CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAG 250 (635)
T ss_dssp SSCCCEEC---------GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHHHHHHHTTTT
T ss_pred Cccccccc---------cccccchhhhhhhhhhhhcccCcccccCccccc--chhhhhhhhhcccccccccchhhcCCcc
Confidence 66543210 0111111111 1234556666665555554432 3456677777665432111 2334444
Q ss_pred cceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCC
Q 044085 790 LKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRL 869 (1151)
Q Consensus 790 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 869 (1151)
++...+..+.......... .....+..+..+.+..+.... ...........+..+.+++.+.+.++ .+....
T Consensus 251 l~~~~l~~~~~~~~~~l~~---~~~~~~~~~~~l~~~~l~~~~----~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~ 322 (635)
T 4g8a_A 251 LEVHRLVLGEFRNEGNLEK---FDKSALEGLCNLTIEEFRLAY----LDYYLDGIIDLFNCLTNVSSFSLVSV-TIERVK 322 (635)
T ss_dssp CEEEEEEEECCTTSCCCSC---CCTTTTGGGGGSEEEEEEEEC----CCSCEEECTTTTGGGTTCSEEEEESC-EEEECG
T ss_pred ccccccccccccccccccc---ccccccccccchhhhhhhhhh----hcccccchhhhhhhhccccccccccc-cccccc
Confidence 4444433221100000000 000111111111111111000 00011111223344566666666663 333111
Q ss_pred C-CCCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEE
Q 044085 870 P-QRFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISM 948 (1151)
Q Consensus 870 p-~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~l 948 (1151)
+ .....++.|++.++.........++.|+.+.+.++... .+.....+++|+.|++
T Consensus 323 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~------------------------~~~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 323 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG------------------------NAFSEVDLPSLEFLDL 378 (635)
T ss_dssp GGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSC------------------------CBCCCCBCTTCCEEEC
T ss_pred ccccchhhhhhhcccccccCcCcccchhhhhcccccccCC------------------------CCcccccccccccchh
Confidence 1 23456677777666655555555666666666554311 1112335677788888
Q ss_pred eCCccccccCCC----CCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCC-CCCCCCCCccEEEecCCCc
Q 044085 949 YGSRLVSFAEGG----LPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIP-EEVGFPPNITELHIEGPNI 1023 (1151)
Q Consensus 949 s~n~l~~~~~~~----~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~Ls~n~l 1023 (1151)
++|.+....... ...+|+.|++..|.... .+..+..+++|+.++++.|......+ ..+..+++++.+++++|.+
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred hccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 877765432211 11477777777776544 34456677778888877776655443 3456677788888888777
Q ss_pred cccccccCCCCCCCcceEEeccCCCCcccccC---CCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCcCC
Q 044085 1024 CKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK---LPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLISLP 1098 (1151)
Q Consensus 1024 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~ 1098 (1151)
....+. .+..+++|+.|++++|.......+. ..++|+.|++++| +++.++ .+.++++|++|+|++| ++..++
T Consensus 458 ~~~~~~-~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~ 534 (635)
T 4g8a_A 458 RVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLD 534 (635)
T ss_dssp EECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCC
T ss_pred cccccc-ccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCC
Confidence 665544 4677777888888775433222222 2347788888875 677765 7899999999999999 788887
Q ss_pred CC--CCCCCcceEeeccCc
Q 044085 1099 KN--GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1099 ~~--~~~~sL~~L~i~~c~ 1115 (1151)
.. ...++|+.|++++|.
T Consensus 535 ~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 535 TFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp CGGGTTCTTCCEEECTTSC
T ss_pred hhHHhCCCCCCEEECCCCc
Confidence 64 345899999999984
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.2e-26 Score=273.69 Aligned_cols=112 Identities=14% Similarity=0.142 Sum_probs=91.0
Q ss_pred ccccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCC
Q 044085 934 PDGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPP 1011 (1151)
Q Consensus 934 ~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 1011 (1151)
|..+.++++|+.|++++|.++.++...+. ++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 44566788888888888888877655443 6888999998888777777888899999999999988877788888899
Q ss_pred CccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 1012 NITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 1012 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
+|++|++++|.+++.+.. .+.++++|+.|++++|
T Consensus 372 ~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTN 405 (455)
T ss_dssp TCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred cccEEECCCCccccCCHh-HhccCCcccEEEccCC
Confidence 999999999998877654 4778888888888884
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.8e-26 Score=268.27 Aligned_cols=119 Identities=23% Similarity=0.317 Sum_probs=95.9
Q ss_pred CCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCC
Q 044085 524 VEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYN 603 (1151)
Q Consensus 524 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~ 603 (1151)
++++++|.+.+... .. .+ .+..+++|++|+|++|.++.+|. +.++++|++|++++|.++.+|. +.++++
T Consensus 45 l~~l~~L~l~~~~i-------~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLGI-------KS-ID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSCC-------CC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTT
T ss_pred hccccEEecCCCCC-------cc-Cc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCC
Confidence 44666776654431 11 12 26778999999999999999987 9999999999999999998877 999999
Q ss_pred CcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCCccCe
Q 044085 604 LQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAK 657 (1151)
Q Consensus 604 L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 657 (1151)
|++|++++| .+..+|. +..+++|++|++++|.+ ..+| .++.+++|+.|.+
T Consensus 114 L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l 163 (466)
T 1o6v_A 114 LTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSF 163 (466)
T ss_dssp CCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEE
T ss_pred CCEEECCCC-CCCCChH-HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeec
Confidence 999999999 6777765 89999999999999984 4454 4778888887765
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.5e-25 Score=259.22 Aligned_cols=95 Identities=24% Similarity=0.234 Sum_probs=45.7
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeec
Q 044085 554 RLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKN 633 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 633 (1151)
.++.|++|++++|.++.+| .++.+++|++|+|++|.++.+| ++.+++|++|++++| .+..+| ++.+++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCEEEC
Confidence 3445555555555555444 3455555555555555555443 445555555555554 333332 445555555555
Q ss_pred CCCCccccCcccccCccCCCccCe
Q 044085 634 SHSNLFEEMPLRIGKLTSLRTLAK 657 (1151)
Q Consensus 634 ~~~~~~~~~p~~i~~L~~L~~L~~ 657 (1151)
++|.+. .+| ++.+++|+.|++
T Consensus 114 ~~N~l~-~l~--~~~l~~L~~L~l 134 (457)
T 3bz5_A 114 DTNKLT-KLD--VSQNPLLTYLNC 134 (457)
T ss_dssp CSSCCS-CCC--CTTCTTCCEEEC
T ss_pred CCCcCC-eec--CCCCCcCCEEEC
Confidence 555422 232 444444444443
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6e-25 Score=248.77 Aligned_cols=98 Identities=24% Similarity=0.406 Sum_probs=68.6
Q ss_pred CCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeee
Q 044085 553 PRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLK 632 (1151)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 632 (1151)
..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEE
Confidence 356777788888777777764 7777788888888887777766 777788888888777 566654 477778888888
Q ss_pred cCCCCccccCcccccCccCCCccC
Q 044085 633 NSHSNLFEEMPLRIGKLTSLRTLA 656 (1151)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~ 656 (1151)
+++|.+ ..+|. +..+++|+.|+
T Consensus 117 l~~n~i-~~~~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 117 LNEDNI-SDISP-LANLTKMYSLN 138 (347)
T ss_dssp CTTSCC-CCCGG-GTTCTTCCEEE
T ss_pred CcCCcc-cCchh-hccCCceeEEE
Confidence 877773 33333 55555555554
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=9.6e-24 Score=250.05 Aligned_cols=93 Identities=24% Similarity=0.345 Sum_probs=59.1
Q ss_pred cEEEecCccccccCccccCCCcccEEEccccccccc-chhhhcCCCCcEEecccccccccc-ccccccCCccCeeecCCC
Q 044085 559 RVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKL-FPDIGNLTNLRHLKNSHS 636 (1151)
Q Consensus 559 r~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~~~~L~~L~~L~l~~~ 636 (1151)
+.++.+++.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+ |..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence 456666777777776553 4677777777777766 455777777777777777 44443 556777777777777777
Q ss_pred CccccCcc-cccCccCCCcc
Q 044085 637 NLFEEMPL-RIGKLTSLRTL 655 (1151)
Q Consensus 637 ~~~~~~p~-~i~~L~~L~~L 655 (1151)
.+ ..+|. .++++++|++|
T Consensus 91 ~l-~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 91 RL-KLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CC-CSCCTTSSTTCTTCCEE
T ss_pred cC-CccCcccccCCCCCCEE
Confidence 63 33332 23444444433
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=7.6e-24 Score=243.59 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCCcccEEEecCccccccCcc-ccCCCcccEEEcccccccccch-hhhcCCCCcEEeccccccccccc-cccccCCccCe
Q 044085 554 RLRRLRVLSLCGYWILQLPND-IGELKHLRYLEFSRTAIEVLPE-SVSTLYNLQTLILERCYRLKKLF-PDIGNLTNLRH 630 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~ 630 (1151)
.++++++|+++++.++.+|.. +.++++|++|+|++|.++.+|. .+..+++|++|++++| .+..+| ..+.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCE
Confidence 357788888888888888754 5778888888888888887754 6788888888888887 454444 44677777777
Q ss_pred eecCCCC
Q 044085 631 LKNSHSN 637 (1151)
Q Consensus 631 L~l~~~~ 637 (1151)
|++++|.
T Consensus 122 L~L~~n~ 128 (390)
T 3o6n_A 122 LVLERND 128 (390)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 7777776
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=5.1e-24 Score=252.43 Aligned_cols=296 Identities=20% Similarity=0.216 Sum_probs=188.3
Q ss_pred CcccEEEecCccccccC-ccccCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccccc-cccCCccCeee
Q 044085 556 RRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLK 632 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~ 632 (1151)
+.+++|+|++|.++.++ ..|.++++|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. |.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 57899999999999885 7889999999999999999977 778999999999999998 67777765 78999999999
Q ss_pred cCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEE
Q 044085 633 NSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK 712 (1151)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 712 (1151)
+++|.+....|..+..+++|+.|++..+.....
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------------------------------- 143 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI----------------------------------------------- 143 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-----------------------------------------------
T ss_pred CCCCccccCChhHccccccCCEEECCCCcccee-----------------------------------------------
Confidence 999987666666677777776665433311000
Q ss_pred ecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcc
Q 044085 713 WGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLK 791 (1151)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 791 (1151)
....+..+++|+.|++++|....+|..... .+++|+.|+|++|.+....+ .+..+++|+
T Consensus 144 -------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 144 -------------------SHRAFSGLNSLEQLTLEKCNLTSIPTEALS-HLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp -------------------CTTSSTTCTTCCEEEEESCCCSSCCHHHHT-TCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred -------------------ChhhccCCCCCCEEECCCCcCcccChhHhc-ccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 001122233444444444444444432111 25555555555555543333 444555555
Q ss_pred eeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCC
Q 044085 792 NLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQ 871 (1151)
Q Consensus 792 ~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~ 871 (1151)
.|++++|..+..++... ....+|+.|++++ ++++ .+|
T Consensus 204 ~L~l~~~~~~~~~~~~~----------------------------------------~~~~~L~~L~l~~-n~l~-~~~- 240 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNC----------------------------------------LYGLNLTSLSITH-CNLT-AVP- 240 (477)
T ss_dssp EEEEECCTTCCEECTTT----------------------------------------TTTCCCSEEEEES-SCCC-SCC-
T ss_pred eeeCCCCccccccCccc----------------------------------------ccCccccEEECcC-Cccc-ccC-
Confidence 55555544332222110 0122455555555 2333 111
Q ss_pred CCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCC
Q 044085 872 RFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGS 951 (1151)
Q Consensus 872 ~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n 951 (1151)
+..+.++++|+.|++++|
T Consensus 241 --------------------------------------------------------------~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 241 --------------------------------------------------------------YLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp --------------------------------------------------------------HHHHTTCTTCCEEECCSS
T ss_pred --------------------------------------------------------------HHHhcCccccCeeECCCC
Confidence 123455667777777777
Q ss_pred ccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCcc
Q 044085 952 RLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNIC 1024 (1151)
Q Consensus 952 ~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 1024 (1151)
.++.++...+. ++|+.|+|++|.+.+..|..|..+++|++|+|++|.+.+..+..|..+++|+.|+|++|++.
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 77666554443 57777777777777766777777788888888888777655556677777888888887754
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.8e-24 Score=257.64 Aligned_cols=82 Identities=16% Similarity=0.257 Sum_probs=60.1
Q ss_pred CCcccEEEecCccccccCcc-ccCCCcccEEEcccccccccch-hhhcCCCCcEEecccccccccccc-ccccCCccCee
Q 044085 555 LRRLRVLSLCGYWILQLPND-IGELKHLRYLEFSRTAIEVLPE-SVSTLYNLQTLILERCYRLKKLFP-DIGNLTNLRHL 631 (1151)
Q Consensus 555 l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L 631 (1151)
+.++++|++++|.+..+|.. +.++++|++|+|++|.|+.+|. .|+.+++|++|+|++| .+..+|. .|+.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEE
Confidence 56778888888888877744 5777888888888888876644 6778888888888877 4554544 36777777777
Q ss_pred ecCCCC
Q 044085 632 KNSHSN 637 (1151)
Q Consensus 632 ~l~~~~ 637 (1151)
++++|.
T Consensus 129 ~L~~n~ 134 (597)
T 3oja_B 129 VLERND 134 (597)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 777776
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.2e-23 Score=245.09 Aligned_cols=341 Identities=15% Similarity=0.109 Sum_probs=201.3
Q ss_pred CccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccC
Q 044085 572 PNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTS 651 (1151)
Q Consensus 572 p~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~ 651 (1151)
+..++++++|++|++++|.++.+| .+..+++|++|++++| .+..+| ++.+++|++|++++|.+. .+| ++++++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~-~~~--~~~l~~ 107 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLTK 107 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCS-CCC--CTTCTT
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCc-eee--cCCCCc
Confidence 346788999999999999999987 6999999999999999 677775 889999999999999843 343 666666
Q ss_pred CCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHh
Q 044085 652 LRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTR 731 (1151)
Q Consensus 652 L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 731 (1151)
|++|++..+.....
T Consensus 108 L~~L~L~~N~l~~l------------------------------------------------------------------ 121 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL------------------------------------------------------------------ 121 (457)
T ss_dssp CCEEECCSSCCSCC------------------------------------------------------------------
T ss_pred CCEEECCCCcCCee------------------------------------------------------------------
Confidence 66654433211100
Q ss_pred HhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCccccCC
Q 044085 732 VLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGK 811 (1151)
Q Consensus 732 ~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~ 811 (1151)
.+..+++|+.|++++|....++ +. .+++|+.|++++|...+.+ .++.+++|+.|++++|.
T Consensus 122 ---~~~~l~~L~~L~l~~N~l~~l~--l~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~------------ 181 (457)
T 3bz5_A 122 ---DVSQNPLLTYLNCARNTLTEID--VS--HNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNK------------ 181 (457)
T ss_dssp ---CCTTCTTCCEEECTTSCCSCCC--CT--TCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSC------------
T ss_pred ---cCCCCCcCCEEECCCCccceec--cc--cCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCc------------
Confidence 0111223333333333333332 11 2444555555555333332 23444444444444442
Q ss_pred CCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccC
Q 044085 812 YCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSY 891 (1151)
Q Consensus 812 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~ 891 (1151)
+.+ .+ +..+++|+.|++++ +++++.-...+++|+.|++.++....++
T Consensus 182 ----------------------------l~~-l~--l~~l~~L~~L~l~~-N~l~~~~l~~l~~L~~L~Ls~N~l~~ip- 228 (457)
T 3bz5_A 182 ----------------------------ITE-LD--VSQNKLLNRLNCDT-NNITKLDLNQNIQLTFLDCSSNKLTEID- 228 (457)
T ss_dssp ----------------------------CCC-CC--CTTCTTCCEEECCS-SCCSCCCCTTCTTCSEEECCSSCCSCCC-
T ss_pred ----------------------------cce-ec--cccCCCCCEEECcC-CcCCeeccccCCCCCEEECcCCcccccC-
Confidence 111 11 34678888888888 5666321234455555555555433333
Q ss_pred CCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCC---------
Q 044085 892 TALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLP--------- 962 (1151)
Q Consensus 892 ~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--------- 962 (1151)
+..+++|+.|++++|.++.++...++
T Consensus 229 ---------------------------------------------~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 229 ---------------------------------------------VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp ---------------------------------------------CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred ---------------------------------------------ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 33445555555555555444433332
Q ss_pred CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCC--------CCCCCCCccEEEecCCCccccccccCCCC
Q 044085 963 SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPE--------EVGFPPNITELHIEGPNICKLFFDLGFHN 1034 (1151)
Q Consensus 963 ~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 1034 (1151)
.+|+.|++++|...+.+| +..+++|+.|++++|+..+.+|. .+..+++|+.|++++|.+++++ +.+
T Consensus 264 n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~----l~~ 337 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD----VSH 337 (457)
T ss_dssp CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC----CTT
T ss_pred CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc----ccc
Confidence 145566677777666665 46778888888888887766553 2456678899999999888752 778
Q ss_pred CCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCCcCCC
Q 044085 1035 LTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLISLPK 1099 (1151)
Q Consensus 1035 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~~ 1099 (1151)
+++|+.|++++|... .+ ..|..|++... .+. +...+.+|..+++++|.--..+|.
T Consensus 338 l~~L~~L~l~~N~l~--~l----~~L~~L~l~~n-~l~---g~~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 338 NTKLKSLSCVNAHIQ--DF----SSVGKIPALNN-NFE---AEGQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CTTCSEEECCSSCCC--BC----TTGGGSSGGGT-SEE---EEEEEEECCCBCCBTTBEEEECCT
T ss_pred CCcCcEEECCCCCCC--Cc----cccccccccCC-cEE---ecceeeecCccccccCcEEEEcCh
Confidence 888999999884322 11 12333333221 111 112345677778887743335554
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=9e-24 Score=242.99 Aligned_cols=60 Identities=12% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCcccEEEcccccccccchh-hhcCCCCcEEecccccccccccc-ccccCCccCeeecCCCCc
Q 044085 578 LKHLRYLEFSRTAIEVLPES-VSTLYNLQTLILERCYRLKKLFP-DIGNLTNLRHLKNSHSNL 638 (1151)
Q Consensus 578 l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~l~~~~~ 638 (1151)
+.+|++|+++++.++.+|.. +..+++|++|++++| .+..+|. .+..+++|++|++++|.+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l 105 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAI 105 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCC
Confidence 44555555555555555544 455555555555555 3333332 455555555555555553
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.4e-23 Score=237.55 Aligned_cols=305 Identities=17% Similarity=0.158 Sum_probs=183.0
Q ss_pred cccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCC
Q 044085 574 DIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLR 653 (1151)
Q Consensus 574 ~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 653 (1151)
.+..+++|++|+++++.+..+|. +..+++|++|++++| .+..+|. +..+++|++|++++|.+ ..+| .++.+++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i-~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKI-TDIS-ALQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCS
T ss_pred cchhcccccEEEEeCCccccchh-hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcc-cCch-HHcCCCcCC
Confidence 34678999999999999999875 899999999999999 7777877 99999999999999984 3443 466666666
Q ss_pred ccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHh
Q 044085 654 TLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVL 733 (1151)
Q Consensus 654 ~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 733 (1151)
+|++..+.....
T Consensus 114 ~L~l~~n~i~~~-------------------------------------------------------------------- 125 (347)
T 4fmz_A 114 ELYLNEDNISDI-------------------------------------------------------------------- 125 (347)
T ss_dssp EEECTTSCCCCC--------------------------------------------------------------------
T ss_pred EEECcCCcccCc--------------------------------------------------------------------
Confidence 664432211100
Q ss_pred hccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCccccCCCC
Q 044085 734 EMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYC 813 (1151)
Q Consensus 734 ~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 813 (1151)
..+..+++|+.|+++++.....+..+. .+++|+.|++++|.+... +.+..+++|+.|++++|... .++
T Consensus 126 ~~~~~l~~L~~L~l~~n~~~~~~~~~~--~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~-------- 193 (347)
T 4fmz_A 126 SPLANLTKMYSLNLGANHNLSDLSPLS--NMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIE-DIS-------- 193 (347)
T ss_dssp GGGTTCTTCCEEECTTCTTCCCCGGGT--TCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECTTSCCC-CCG--------
T ss_pred hhhccCCceeEEECCCCCCcccccchh--hCCCCcEEEecCCCcCCc-hhhccCCCCCEEEccCCccc-ccc--------
Confidence 002223344444444443222222232 356666666666655332 22555566666666555311 110
Q ss_pred CCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCC
Q 044085 814 SEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTA 893 (1151)
Q Consensus 814 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~ 893 (1151)
.+..+++|+.|++++ +.+++ ++. ...
T Consensus 194 ---------------------------------~~~~l~~L~~L~l~~-n~l~~-~~~-------------------~~~ 219 (347)
T 4fmz_A 194 ---------------------------------PLASLTSLHYFTAYV-NQITD-ITP-------------------VAN 219 (347)
T ss_dssp ---------------------------------GGGGCTTCCEEECCS-SCCCC-CGG-------------------GGG
T ss_pred ---------------------------------cccCCCccceeeccc-CCCCC-Cch-------------------hhc
Confidence 023455555555555 33331 110 111
Q ss_pred CCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCC
Q 044085 894 LPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGC 973 (1151)
Q Consensus 894 ~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n 973 (1151)
+++|+.|++++|. +..++. +..+++|+.|++++|.++.++.....++|+.|++++|
T Consensus 220 ~~~L~~L~l~~n~-----------------------l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 275 (347)
T 4fmz_A 220 MTRLNSLKIGNNK-----------------------ITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN 275 (347)
T ss_dssp CTTCCEEECCSSC-----------------------CCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCcCCEEEccCCc-----------------------cCCCcc-hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence 2233333333321 111222 4566777777777777766654444457777777777
Q ss_pred CCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 974 RYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 974 ~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
.+.+. ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 276 ~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 276 QISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFANQ 343 (347)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSCC
T ss_pred ccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhhh
Confidence 66553 346677777777777777776666666777777777777777776654 556777777777763
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=5.6e-23 Score=249.60 Aligned_cols=126 Identities=21% Similarity=0.217 Sum_probs=101.3
Q ss_pred CCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccC-ccccCCCcccEEEcccccccccch-hhhc
Q 044085 523 EVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVLPE-SVST 600 (1151)
Q Consensus 523 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~ 600 (1151)
.+.+++.+.+.+.. ...+++..|..+++|++|+|++|.++.++ ..|+++++|++|+|++|.|+.+|. .|++
T Consensus 49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 35677877766542 23456667889999999999999999887 589999999999999999998865 4799
Q ss_pred CCCCcEEeccccccccccccc-cccCCccCeeecCCCCccccCcccccCccCCCccC
Q 044085 601 LYNLQTLILERCYRLKKLFPD-IGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLA 656 (1151)
Q Consensus 601 L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 656 (1151)
+++|++|+|++| .+..+|.. |.++++|++|++++|.+.+..|..++.+++|++|+
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 999999999999 77788877 58999999999999986554454555555555543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=4.2e-21 Score=215.13 Aligned_cols=110 Identities=11% Similarity=0.122 Sum_probs=80.9
Q ss_pred cccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCC---
Q 044085 935 DGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGF--- 1009 (1151)
Q Consensus 935 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--- 1009 (1151)
..+.++++|+.|++++|.++.++...+. ++|+.|++++|.+. .+|..+..+++|++|++++|++.+..+..|..
T Consensus 210 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~ 288 (330)
T 1xku_A 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 288 (330)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSC
T ss_pred HHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccc
Confidence 4466778888888888888877664443 58899999998876 57778888899999999999887655554432
Q ss_pred ---CCCccEEEecCCCccc--cccccCCCCCCCcceEEeccC
Q 044085 1010 ---PPNITELHIEGPNICK--LFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 1010 ---l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
.++|+.|++++|++.. ..+ ..|..+.+|+.+++++|
T Consensus 289 ~~~~~~l~~l~l~~N~~~~~~i~~-~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 289 NTKKASYSGVSLFSNPVQYWEIQP-STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CTTSCCCSEEECCSSSSCGGGSCG-GGGTTCCCGGGEEC---
T ss_pred ccccccccceEeecCcccccccCc-cccccccceeEEEeccc
Confidence 4778899999998653 222 25778888888888773
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=6.6e-21 Score=213.60 Aligned_cols=85 Identities=24% Similarity=0.354 Sum_probs=69.5
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEcccccccccc-hhhhcCCCCcEEecccccccccc-ccccccCCccCeeec
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLP-ESVSTLYNLQTLILERCYRLKKL-FPDIGNLTNLRHLKN 633 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~~~~L~~L~~L~l 633 (1151)
..+++++++++.++.+|..+. ++|++|+|++|.|+.+| ..+.++++|++|++++| .+..+ |..+.++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 368999999999999997764 68999999999999874 57999999999999998 45554 677899999999999
Q ss_pred CCCCccccCcc
Q 044085 634 SHSNLFEEMPL 644 (1151)
Q Consensus 634 ~~~~~~~~~p~ 644 (1151)
++|.+ ..+|.
T Consensus 110 ~~n~l-~~l~~ 119 (332)
T 2ft3_A 110 SKNHL-VEIPP 119 (332)
T ss_dssp CSSCC-CSCCS
T ss_pred CCCcC-CccCc
Confidence 98873 34443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=5.5e-21 Score=214.25 Aligned_cols=286 Identities=18% Similarity=0.182 Sum_probs=181.2
Q ss_pred CcccEEEcccccccccchhhhcCCCCcEEeccccccccccc-cccccCCccCeeecCCCCccccCcccccCccCCCccCe
Q 044085 579 KHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLF-PDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAK 657 (1151)
Q Consensus 579 ~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 657 (1151)
.+|++++++++.++.+|..+. ++|++|++++| .+..++ ..+.++++|++|++++|.+....|..++++++|++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 379999999999999998764 79999999999 566664 47999999999999999866555666666666665543
Q ss_pred eEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccC
Q 044085 658 FAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLK 737 (1151)
Q Consensus 658 ~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 737 (1151)
..
T Consensus 110 ~~------------------------------------------------------------------------------ 111 (332)
T 2ft3_A 110 SK------------------------------------------------------------------------------ 111 (332)
T ss_dssp CS------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 32
Q ss_pred CCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCC
Q 044085 738 PHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEP 816 (1151)
Q Consensus 738 ~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~ 816 (1151)
|....+|..+ +++|+.|++++|.+....+ .+..+++|+.|++++|.... .+
T Consensus 112 ------------n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~----------- 163 (332)
T 2ft3_A 112 ------------NHLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN-SG----------- 163 (332)
T ss_dssp ------------SCCCSCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG-GG-----------
T ss_pred ------------CcCCccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc-CC-----------
Confidence 2223333322 2456666666666544333 35666666666666654210 00
Q ss_pred CCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCC
Q 044085 817 FPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPP 896 (1151)
Q Consensus 817 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~ 896 (1151)
..+..+..+ +|+.|++++ ++++ .+|..+. ++
T Consensus 164 --------------------------~~~~~~~~l-~L~~L~l~~-n~l~-~l~~~~~--------------------~~ 194 (332)
T 2ft3_A 164 --------------------------FEPGAFDGL-KLNYLRISE-AKLT-GIPKDLP--------------------ET 194 (332)
T ss_dssp --------------------------SCTTSSCSC-CCSCCBCCS-SBCS-SCCSSSC--------------------SS
T ss_pred --------------------------CCcccccCC-ccCEEECcC-CCCC-ccCcccc--------------------CC
Confidence 001111123 455555555 3444 2332110 12
Q ss_pred cceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCC
Q 044085 897 LCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCR 974 (1151)
Q Consensus 897 L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~ 974 (1151)
|+.|+++++.. ....+..+.++++|+.|++++|.++.++...+. ++|+.|++++|.
T Consensus 195 L~~L~l~~n~i----------------------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 195 LNELHLDHNKI----------------------QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CSCCBCCSSCC----------------------CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcC----------------------CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 22222222210 011123456778888888888888877764443 688999999988
Q ss_pred CcccCccccCCCCccceeeecCCCCCccCCCCCCC------CCCccEEEecCCCcc--ccccccCCCCCCCcceEEeccC
Q 044085 975 YLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGF------PPNITELHIEGPNIC--KLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 975 ~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~------l~~L~~L~Ls~n~l~--~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
+. .+|..+..+++|++|++++|++....+..|.. .++|+.|++++|++. ...+. .|..+++|+.|++++|
T Consensus 253 l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~-~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 253 LS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA-TFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG-GGTTBCCSTTEEC---
T ss_pred Ce-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc-cccccchhhhhhcccc
Confidence 76 57778888999999999999887655555443 467899999999866 33333 5788889998888873
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=1.3e-21 Score=216.59 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=79.5
Q ss_pred CcccEEEecCcccc---ccCccccCCCcccEEEccc-cccc-ccchhhhcCCCCcEEeccccccccccccccccCCccCe
Q 044085 556 RRLRVLSLCGYWIL---QLPNDIGELKHLRYLEFSR-TAIE-VLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRH 630 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~---~lp~~i~~l~~Lr~L~Ls~-n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~ 630 (1151)
..+++|+|++|.+. .+|..|.++++|++|+|++ |.+. .+|..|.++++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 56889999999887 5788899999999999994 7777 67888999999999999998544578888999999999
Q ss_pred eecCCCCccccCcccccCccCCCcc
Q 044085 631 LKNSHSNLFEEMPLRIGKLTSLRTL 655 (1151)
Q Consensus 631 L~l~~~~~~~~~p~~i~~L~~L~~L 655 (1151)
|++++|.+.+.+|..++.+++|++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeE
Confidence 9999888655566555554444443
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1e-20 Score=212.01 Aligned_cols=94 Identities=24% Similarity=0.397 Sum_probs=46.9
Q ss_pred cccEEEecCccccccCccccCCCcccEEEcccccccccch-hhhcCCCCcEEecccccccccc-ccccccCCccCeeecC
Q 044085 557 RLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPE-SVSTLYNLQTLILERCYRLKKL-FPDIGNLTNLRHLKNS 634 (1151)
Q Consensus 557 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~~~~L~~L~~L~l~ 634 (1151)
.+++++++++.++.+|..+. ++|++|+|++|.|+.+|. .|.++++|++|++++| .+..+ |..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 45555555555555554432 355555555555555533 3555555555555555 33333 4445555555555555
Q ss_pred CCCccccCcccccCccCCCccC
Q 044085 635 HSNLFEEMPLRIGKLTSLRTLA 656 (1151)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L~ 656 (1151)
+|. ...+|..+. ++|++|+
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELR 127 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEE
T ss_pred CCc-CCccChhhc--ccccEEE
Confidence 555 234444333 3444443
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.9e-20 Score=208.48 Aligned_cols=192 Identities=23% Similarity=0.339 Sum_probs=134.8
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeec
Q 044085 554 RLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKN 633 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 633 (1151)
....+++|+|++|.++.+|..+.++++|++|+|++|.++.+|..++++++|++|++++| .+..+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999 67799999999999999999
Q ss_pred CCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEe
Q 044085 634 SHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 713 (1151)
Q Consensus 634 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 713 (1151)
++|...+.+|..++..... ..+.++++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~---------------------------------------------~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTDAS---------------------------------------------GEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC-C---------------------------------------------CCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhccch---------------------------------------------hhhccCCCCCEEECcC
Confidence 9988778887765441000 0022334555555555
Q ss_pred cCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcce
Q 044085 714 GDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKN 792 (1151)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~ 792 (1151)
|.+.. ....+..+++|+.|++++|....+|..+. .+++|+.|+|++|.+.+.+| .++.+++|+.
T Consensus 193 n~l~~-------------lp~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 193 TGIRS-------------LPASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp ECCCC-------------CCGGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred CCcCc-------------chHhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 54321 11123334556666666666555655544 25666666666666655555 4566666666
Q ss_pred eeccCccCceEeCc
Q 044085 793 LVIKGMAKVKSVGL 806 (1151)
Q Consensus 793 L~L~~~~~l~~~~~ 806 (1151)
|+|++|.....++.
T Consensus 258 L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 258 LILKDCSNLLTLPL 271 (328)
T ss_dssp EECTTCTTCCBCCT
T ss_pred EECCCCCchhhcch
Confidence 66666655444443
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.84 E-value=8.6e-20 Score=218.34 Aligned_cols=78 Identities=22% Similarity=0.218 Sum_probs=67.0
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCC
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSH 635 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~ 635 (1151)
..+++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 458999999999999998776 799999999999999987 6789999999999 6788887 778999999999
Q ss_pred CCccccCc
Q 044085 636 SNLFEEMP 643 (1151)
Q Consensus 636 ~~~~~~~p 643 (1151)
|.+ ..+|
T Consensus 111 N~l-~~l~ 117 (622)
T 3g06_A 111 NPL-THLP 117 (622)
T ss_dssp CCC-CCCC
T ss_pred CcC-CCCC
Confidence 873 3344
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=4.4e-22 Score=243.27 Aligned_cols=84 Identities=19% Similarity=0.227 Sum_probs=39.3
Q ss_pred CCCcccEEEecCcccccc-CccccC-C-CcccEEEccccc-cc--ccchhhhcCCCCcEEeccccccccc----cccccc
Q 044085 554 RLRRLRVLSLCGYWILQL-PNDIGE-L-KHLRYLEFSRTA-IE--VLPESVSTLYNLQTLILERCYRLKK----LFPDIG 623 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~l-p~~i~~-l-~~Lr~L~Ls~n~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~----lp~~~~ 623 (1151)
.+++|++|+|++|.++.. +..+.. + .+|++|+|++|. ++ .++..+.++++|++|+|++|..... ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 555666666666554322 222322 2 236666665544 22 2233334556666666665522111 222234
Q ss_pred cCCccCeeecCCCC
Q 044085 624 NLTNLRHLKNSHSN 637 (1151)
Q Consensus 624 ~L~~L~~L~l~~~~ 637 (1151)
.+++|++|++++|.
T Consensus 190 ~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE 203 (592)
T ss_dssp HCCCCCEEECTTCC
T ss_pred cCCCccEEEeeccC
Confidence 45556666665555
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=205.27 Aligned_cols=271 Identities=17% Similarity=0.180 Sum_probs=170.8
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEEcccccccccch-hhhcCCCCcEEecccccccccc-ccccccCCccCee
Q 044085 554 RLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPE-SVSTLYNLQTLILERCYRLKKL-FPDIGNLTNLRHL 631 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~~~~L~~L~~L 631 (1151)
.|+...+.+++++.++.+|..+. ++|++|++++|.++.+|. .+.++++|++|++++| .+..+ |..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEE
Confidence 44555668888899999998765 489999999999998866 6899999999999998 55555 4568889999999
Q ss_pred ecCCCCccccCccc-ccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceE
Q 044085 632 KNSHSNLFEEMPLR-IGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALS 710 (1151)
Q Consensus 632 ~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 710 (1151)
++++|.+. .+|.. ++++++|++|
T Consensus 106 ~Ls~n~l~-~~~~~~~~~l~~L~~L------------------------------------------------------- 129 (353)
T 2z80_A 106 DLSYNYLS-NLSSSWFKPLSSLTFL------------------------------------------------------- 129 (353)
T ss_dssp ECCSSCCS-SCCHHHHTTCTTCSEE-------------------------------------------------------
T ss_pred ECCCCcCC-cCCHhHhCCCccCCEE-------------------------------------------------------
Confidence 99988743 33332 4444443333
Q ss_pred EEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCc--ccCCCCCCCeeEEEEecCCCCCCC-C-CCCC
Q 044085 711 LKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPT--WLGQSSFKNLVVLRFRNCNQCTSL-P-SVGH 786 (1151)
Q Consensus 711 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~~l-~-~l~~ 786 (1151)
++++|....+|. .+. .+++|+.|++++|.....+ + .++.
T Consensus 130 -----------------------------------~L~~n~l~~l~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~~ 172 (353)
T 2z80_A 130 -----------------------------------NLLGNPYKTLGETSLFS--HLTKLQILRVGNMDTFTKIQRKDFAG 172 (353)
T ss_dssp -----------------------------------ECTTCCCSSSCSSCSCT--TCTTCCEEEEEESSSCCEECTTTTTT
T ss_pred -----------------------------------ECCCCCCcccCchhhhc--cCCCCcEEECCCCccccccCHHHccC
Confidence 333333333443 222 3677777777777433333 2 5667
Q ss_pred CCCcceeeccCccCceEeCccccCCCCCCCCCCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcc
Q 044085 787 LPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLK 866 (1151)
Q Consensus 787 l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 866 (1151)
+++|+.|++++|......+ ..+..+++|++|++++ +.++
T Consensus 173 l~~L~~L~l~~n~l~~~~~----------------------------------------~~l~~l~~L~~L~l~~-n~l~ 211 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEP----------------------------------------KSLKSIQNVSHLILHM-KQHI 211 (353)
T ss_dssp CCEEEEEEEEETTCCEECT----------------------------------------TTTTTCSEEEEEEEEC-SCST
T ss_pred CCCCCEEECCCCCcCccCH----------------------------------------HHHhccccCCeecCCC-Cccc
Confidence 7777777777664322211 1222455555555555 2332
Q ss_pred cCCCCCCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEE
Q 044085 867 GRLPQRFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTI 946 (1151)
Q Consensus 867 ~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L 946 (1151)
.+|. ..+..+++|+.|
T Consensus 212 -~~~~---------------------------------------------------------------~~~~~~~~L~~L 227 (353)
T 2z80_A 212 -LLLE---------------------------------------------------------------IFVDVTSSVECL 227 (353)
T ss_dssp -THHH---------------------------------------------------------------HHHHHTTTEEEE
T ss_pred -cchh---------------------------------------------------------------hhhhhcccccEE
Confidence 1111 001124455555
Q ss_pred EEeCCccccccCCCC-----CCCccEEEEcCCCCcc----cCccccCCCCccceeeecCCCCCccCCCC-CCCCCCccEE
Q 044085 947 SMYGSRLVSFAEGGL-----PSNLCSLTLFGCRYLT----ALPNGIYNLSSLQHLEIRACPRIASIPEE-VGFPPNITEL 1016 (1151)
Q Consensus 947 ~ls~n~l~~~~~~~~-----~~~L~~L~L~~n~~~~----~l~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~l~~L~~L 1016 (1151)
++++|.++.++...+ .+.++.++++++.+.+ .+|..+..+++|++|++++|.+. .+|.. +..+++|++|
T Consensus 228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L 306 (353)
T 2z80_A 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKI 306 (353)
T ss_dssp EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEE
Confidence 555555544332222 2456666676666554 35677888999999999999887 45554 5788999999
Q ss_pred EecCCCcccc
Q 044085 1017 HIEGPNICKL 1026 (1151)
Q Consensus 1017 ~Ls~n~l~~~ 1026 (1151)
++++|++...
T Consensus 307 ~L~~N~~~~~ 316 (353)
T 2z80_A 307 WLHTNPWDCS 316 (353)
T ss_dssp ECCSSCBCCC
T ss_pred EeeCCCccCc
Confidence 9999987643
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=3.7e-20 Score=204.88 Aligned_cols=110 Identities=16% Similarity=0.166 Sum_probs=60.0
Q ss_pred ccccCCCC-CccEEEEeCCccccccCCCCC-CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCC
Q 044085 934 PDGLHKLS-HITTISMYGSRLVSFAEGGLP-SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPP 1011 (1151)
Q Consensus 934 ~~~l~~l~-~L~~L~ls~n~l~~~~~~~~~-~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 1011 (1151)
|..+.+++ +|+.|++++|.++......+. .+|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|. +..++
T Consensus 166 p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 244 (313)
T 1ogq_A 166 PDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244 (313)
T ss_dssp CGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT
T ss_pred CHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC
Confidence 33444454 566666666666522222111 2366666666666555555666666666666666666544444 45566
Q ss_pred CccEEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 1012 NITELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1012 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
+|++|++++|.+++..+. .+..+++|+.|++++
T Consensus 245 ~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 245 NLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSF 277 (313)
T ss_dssp TCCEEECCSSCCEECCCG-GGGGCTTCCEEECCS
T ss_pred CCCEEECcCCcccCcCCh-HHhcCcCCCEEECcC
Confidence 666666666666543332 245555555555555
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.3e-21 Score=239.14 Aligned_cols=109 Identities=18% Similarity=0.094 Sum_probs=70.3
Q ss_pred cCCCCCccEEEEeCCc--cccccCC---CCCCCccEEEEcCCCCcc-cCccccCCCCccceeeecCCCCCcc-CCCCCCC
Q 044085 937 LHKLSHITTISMYGSR--LVSFAEG---GLPSNLCSLTLFGCRYLT-ALPNGIYNLSSLQHLEIRACPRIAS-IPEEVGF 1009 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~--l~~~~~~---~~~~~L~~L~L~~n~~~~-~l~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~ 1009 (1151)
+.++++|+.|+++++. ++..... ...++|+.|+|++|.+.+ .++..+..+++|++|+|++|++... ++.....
T Consensus 432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 511 (592)
T 3ogk_B 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTK 511 (592)
T ss_dssp HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHh
Confidence 4567888888887532 3321111 112578999999888765 3445567788899999999986533 3333356
Q ss_pred CCCccEEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 1010 PPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1010 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
+++|+.|+|++|.+++.....-...++.+....+..
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 788999999999877654332234566666655554
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=1.1e-18 Score=208.81 Aligned_cols=262 Identities=24% Similarity=0.258 Sum_probs=154.7
Q ss_pred CCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCccCCCccCe
Q 044085 578 LKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAK 657 (1151)
Q Consensus 578 l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~ 657 (1151)
..++++|++++|.++.+|..+. ++|++|++++| .+..+|. .+++|++|++++|. ...+|. .+++|+.|++
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEE
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEEC
Confidence 3468999999999999998776 89999999999 7888887 57899999999998 344554 3344444433
Q ss_pred eEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccC
Q 044085 658 FAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLK 737 (1151)
Q Consensus 658 ~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 737 (1151)
..+ .+.. +..
T Consensus 109 s~N------------------------------------------------------~l~~--------------l~~-- 118 (622)
T 3g06_A 109 FSN------------------------------------------------------PLTH--------------LPA-- 118 (622)
T ss_dssp CSC------------------------------------------------------CCCC--------------CCC--
T ss_pred cCC------------------------------------------------------cCCC--------------CCC--
Confidence 222 1100 000
Q ss_pred CCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceeeccCccCceEeCccccCCCCCCCC
Q 044085 738 PHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPF 817 (1151)
Q Consensus 738 ~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 817 (1151)
.+++|+.|++++|....+|.. +++|+.|+|++|.+.. +|. .+++|+.|++++|..
T Consensus 119 ~l~~L~~L~L~~N~l~~lp~~-----l~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~N~l----------------- 173 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTSLPVL-----PPGLQELSVSDNQLAS-LPA--LPSELCKLWAYNNQL----------------- 173 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCC-----------------
T ss_pred CCCCcCEEECCCCCCCcCCCC-----CCCCCEEECcCCcCCC-cCC--ccCCCCEEECCCCCC-----------------
Confidence 123444455555544444432 2455555555554432 221 224444454444421
Q ss_pred CCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCc
Q 044085 818 PSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPL 897 (1151)
Q Consensus 818 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L 897 (1151)
. ..| ..+++|+.|++++ |+++ .+|..+++|+.|.+.+|..
T Consensus 174 -----------------------~-~l~---~~~~~L~~L~Ls~-N~l~-~l~~~~~~L~~L~L~~N~l----------- 213 (622)
T 3g06_A 174 -----------------------T-SLP---MLPSGLQELSVSD-NQLA-SLPTLPSELYKLWAYNNRL----------- 213 (622)
T ss_dssp -----------------------S-CCC---CCCTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSCC-----------
T ss_pred -----------------------C-CCc---ccCCCCcEEECCC-CCCC-CCCCccchhhEEECcCCcc-----------
Confidence 1 011 1356677777777 4566 3555445555444433321
Q ss_pred ceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcc
Q 044085 898 CELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLT 977 (1151)
Q Consensus 898 ~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~ 977 (1151)
..+|. .+++|+.|++++|.++.+| ..+++|+.|+|++|.+..
T Consensus 214 ---------------------------------~~l~~---~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~ 255 (622)
T 3g06_A 214 ---------------------------------TSLPA---LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTS 255 (622)
T ss_dssp ---------------------------------SSCCC---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred ---------------------------------cccCC---CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCc
Confidence 12221 1356777777777777666 333577777777776653
Q ss_pred cCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccc
Q 044085 978 ALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLF 1027 (1151)
Q Consensus 978 ~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 1027 (1151)
+|. .+++|++|++++|.+. .+|..+..+++|+.|+|++|++++..
T Consensus 256 -lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 256 -LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp -CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred -CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 444 4567777777777666 56666777777777777777766544
No 57
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=2.6e-22 Score=237.05 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=72.3
Q ss_pred ccccCCCCCccEEEEeCCccccccCCCC-------CCCccEEEEcCCCCccc----CccccCCCCccceeeecCCCCCcc
Q 044085 934 PDGLHKLSHITTISMYGSRLVSFAEGGL-------PSNLCSLTLFGCRYLTA----LPNGIYNLSSLQHLEIRACPRIAS 1002 (1151)
Q Consensus 934 ~~~l~~l~~L~~L~ls~n~l~~~~~~~~-------~~~L~~L~L~~n~~~~~----l~~~l~~l~~L~~L~L~~~~~~~~ 1002 (1151)
+..+.++++|++|++++|.+.+.....+ +++|+.|++++|.+... ++..+..+++|++|++++|.+.+.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 3445557778888888887754321111 14788888888887654 455566778888888888876653
Q ss_pred CCCCCC-----CCCCccEEEecCCCccc----cccccCCCCCCCcceEEeccCC
Q 044085 1003 IPEEVG-----FPPNITELHIEGPNICK----LFFDLGFHNLTSVRDLFIKDGL 1047 (1151)
Q Consensus 1003 ~~~~~~-----~l~~L~~L~Ls~n~l~~----~~~~~~~~~l~~L~~L~l~~~~ 1047 (1151)
.+..+. ..++|++|++++|.+++ ..+. .+..+++|+.|++++|.
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSSS
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCCC
Confidence 322221 25688888888888774 1111 35567788888888753
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.7e-18 Score=202.91 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=59.4
Q ss_pred ccEEEecCccccccCccccCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccc-cccccCCccCeeecCC
Q 044085 558 LRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLF-PDIGNLTNLRHLKNSH 635 (1151)
Q Consensus 558 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~l~~ 635 (1151)
.+.++.++..++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..++ ..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 4567778788888887664 5888888888888876 566888888888888888 454444 5677888888888887
Q ss_pred CCc
Q 044085 636 SNL 638 (1151)
Q Consensus 636 ~~~ 638 (1151)
|.+
T Consensus 133 n~l 135 (452)
T 3zyi_A 133 NWL 135 (452)
T ss_dssp SCC
T ss_pred CcC
Confidence 773
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=2e-18 Score=201.44 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=57.8
Q ss_pred ccEEEecCccccccCccccCCCcccEEEcccccccccc-hhhhcCCCCcEEeccccccccccc-cccccCCccCeeecCC
Q 044085 558 LRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLP-ESVSTLYNLQTLILERCYRLKKLF-PDIGNLTNLRHLKNSH 635 (1151)
Q Consensus 558 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp-~~~~~L~~L~~L~l~~ 635 (1151)
.+.++.++..++.+|..+. .++++|+|++|.|+.++ ..|.++++|++|+|++| .+..++ ..|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 4567777778888887665 57888888888888764 56888888888888887 455444 4577788888888877
Q ss_pred CCc
Q 044085 636 SNL 638 (1151)
Q Consensus 636 ~~~ 638 (1151)
|.+
T Consensus 122 n~l 124 (440)
T 3zyj_A 122 NRL 124 (440)
T ss_dssp SCC
T ss_pred CcC
Confidence 763
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=4.8e-22 Score=234.75 Aligned_cols=89 Identities=21% Similarity=0.279 Sum_probs=58.8
Q ss_pred hhcCCCCcccEEEecCcccc-----ccCccccCCCcccEEEccccccccc-chhh-hcCC----CCcEEecccccccc--
Q 044085 550 HVIPRLRRLRVLSLCGYWIL-----QLPNDIGELKHLRYLEFSRTAIEVL-PESV-STLY----NLQTLILERCYRLK-- 616 (1151)
Q Consensus 550 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~Ls~n~i~~l-p~~i-~~L~----~L~~L~L~~~~~l~-- 616 (1151)
..+..+++|++|+|++|.++ .++..+..+++|++|+|++|.+... +..+ ..+. +|++|++++| .+.
T Consensus 22 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~ 100 (461)
T 1z7x_W 22 ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGA 100 (461)
T ss_dssp HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGG
T ss_pred HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHH
Confidence 34566777777777777766 4456667777777777777777642 3232 3344 5777777777 343
Q ss_pred ---ccccccccCCccCeeecCCCCcc
Q 044085 617 ---KLFPDIGNLTNLRHLKNSHSNLF 639 (1151)
Q Consensus 617 ---~lp~~~~~L~~L~~L~l~~~~~~ 639 (1151)
.+|..+..+++|++|++++|.+.
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred HHHHHHHHHccCCceeEEECCCCcCc
Confidence 45666777777777777777743
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=9.1e-19 Score=193.81 Aligned_cols=93 Identities=20% Similarity=0.173 Sum_probs=58.8
Q ss_pred cEEEecCccccccCccccCCCcccEEEcccccccccchh-hhcCCCCcEEecccccccccc---ccccccCCccCeeecC
Q 044085 559 RVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPES-VSTLYNLQTLILERCYRLKKL---FPDIGNLTNLRHLKNS 634 (1151)
Q Consensus 559 r~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l---p~~~~~L~~L~~L~l~ 634 (1151)
+.++++++.++.+|..+. ++|++|+|++|.++.+|.. +.++++|++|++++| .+..+ |..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECC
Confidence 456777777777776553 5777777777777777655 577777777777777 44333 4556667777777777
Q ss_pred CCCccccCcccccCccCCCcc
Q 044085 635 HSNLFEEMPLRIGKLTSLRTL 655 (1151)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L 655 (1151)
+|.+ ..+|..+..+++|++|
T Consensus 87 ~n~i-~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 87 FNGV-ITMSSNFLGLEQLEHL 106 (306)
T ss_dssp SCSE-EEEEEEEETCTTCCEE
T ss_pred CCcc-ccChhhcCCCCCCCEE
Confidence 7763 3344444444443333
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=1.7e-18 Score=192.63 Aligned_cols=229 Identities=18% Similarity=0.262 Sum_probs=171.8
Q ss_pred CCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCC
Q 044085 739 HYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPF 817 (1151)
Q Consensus 739 ~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 817 (1151)
..+++.|+++++....+|..+.. +++|+.|+|++|.+. .+| .++.+++|++|+|++|... .
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~-------------- 141 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFR--LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-A-------------- 141 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGG--GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-C--------------
T ss_pred ccceeEEEccCCCchhcChhhhh--CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-c--------------
Confidence 46788999999888888888764 889999999999887 555 6888888888888887421 1
Q ss_pred CCcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCc
Q 044085 818 PSLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPL 897 (1151)
Q Consensus 818 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L 897 (1151)
.|..+..+++|++|++++|+.+. .+|..+.... ....+..+++|
T Consensus 142 --------------------------lp~~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~~---------~~~~~~~l~~L 185 (328)
T 4fcg_A 142 --------------------------LPASIASLNRLRELSIRACPELT-ELPEPLASTD---------ASGEHQGLVNL 185 (328)
T ss_dssp --------------------------CCGGGGGCTTCCEEEEEEETTCC-CCCSCSEEEC----------CCCEEESTTC
T ss_pred --------------------------CcHHHhcCcCCCEEECCCCCCcc-ccChhHhhcc---------chhhhccCCCC
Confidence 23334467888888888865444 6665432210 00112234556
Q ss_pred ceEEEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCC-CCCCccEEEEcCCCCc
Q 044085 898 CELAIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGG-LPSNLCSLTLFGCRYL 976 (1151)
Q Consensus 898 ~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~-~~~~L~~L~L~~n~~~ 976 (1151)
+.|+++++. +..+|..+.++++|++|++++|.++.++... -.++|+.|++++|.+.
T Consensus 186 ~~L~L~~n~-----------------------l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 186 QSLRLEWTG-----------------------IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp CEEEEEEEC-----------------------CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTC
T ss_pred CEEECcCCC-----------------------cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcch
Confidence 666665542 2356677888899999999999998776531 1268999999999999
Q ss_pred ccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 977 TALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 977 ~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
+.+|..+..+++|++|++++|++.+.+|..+..+++|+.|+|++|.+.+..+. .+.++++|+.+++..
T Consensus 243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPP 310 (328)
T ss_dssp CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCG
T ss_pred hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCH
Confidence 98998999999999999999999999998889999999999999986655554 478899999888876
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=5e-18 Score=198.04 Aligned_cols=244 Identities=17% Similarity=0.167 Sum_probs=183.6
Q ss_pred cceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCc
Q 044085 742 LKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSL 820 (1151)
Q Consensus 742 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 820 (1151)
...++..+.....+|..+ .++++.|+|++|.+....+ .+..+++|+.|+|++|......+..|.+ +++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~------l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG------LANL 114 (440)
T ss_dssp SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT------CSSC
T ss_pred CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC------CccC
Confidence 456777777788888766 4689999999999866554 7889999999999998643333233322 7788
Q ss_pred ceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCcceE
Q 044085 821 ETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPLCEL 900 (1151)
Q Consensus 821 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 900 (1151)
++|++++ +.+....+..+..+++|++|++++ |.++. ++. ..+..+++|+.|
T Consensus 115 ~~L~L~~----------n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~-~~~-----------------~~~~~l~~L~~L 165 (440)
T 3zyj_A 115 NTLELFD----------NRLTTIPNGAFVYLSKLKELWLRN-NPIES-IPS-----------------YAFNRIPSLRRL 165 (440)
T ss_dssp CEEECCS----------SCCSSCCTTTSCSCSSCCEEECCS-CCCCE-ECT-----------------TTTTTCTTCCEE
T ss_pred CEEECCC----------CcCCeeCHhHhhccccCceeeCCC-Ccccc-cCH-----------------HHhhhCcccCEe
Confidence 8888763 334434344566788888888888 56662 331 112234556666
Q ss_pred EEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCc
Q 044085 901 AIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALP 980 (1151)
Q Consensus 901 ~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~ 980 (1151)
+++++..+..+ .+..+.++++|+.|++++|.++.++.....++|+.|+|++|.+.+..|
T Consensus 166 ~l~~~~~l~~i---------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 224 (440)
T 3zyj_A 166 DLGELKRLSYI---------------------SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRP 224 (440)
T ss_dssp ECCCCTTCCEE---------------------CTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECT
T ss_pred CCCCCCCccee---------------------CcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccCh
Confidence 66655433211 123467889999999999999988876556799999999999988888
Q ss_pred cccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 981 NGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 981 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
..|..+++|++|++++|.+.+..+..|..+++|+.|+|++|.++.++.. .+..+++|+.|+|++|
T Consensus 225 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT-TTSSCTTCCEEECCSS
T ss_pred hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh-HhccccCCCEEEcCCC
Confidence 8999999999999999999988888899999999999999999987765 4788999999999986
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=4.8e-18 Score=198.98 Aligned_cols=244 Identities=18% Similarity=0.173 Sum_probs=182.9
Q ss_pred cceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCc
Q 044085 742 LKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSL 820 (1151)
Q Consensus 742 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L 820 (1151)
...++..+.....+|..+ .++++.|+|++|.+....+ .+..+++|+.|+|++|......+..+. .+++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~------~l~~L 125 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN------GLASL 125 (452)
T ss_dssp SCEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT------TCTTC
T ss_pred CcEEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc------CcccC
Confidence 456666677777788755 3689999999998876655 788899999999998864433333332 27778
Q ss_pred ceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCcceE
Q 044085 821 ETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPLCEL 900 (1151)
Q Consensus 821 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L 900 (1151)
++|+++ .+.+....+..+..+++|++|++++ |.++ .+|. ..+..+++|+.|
T Consensus 126 ~~L~L~----------~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~-~~~~-----------------~~~~~l~~L~~L 176 (452)
T 3zyi_A 126 NTLELF----------DNWLTVIPSGAFEYLSKLRELWLRN-NPIE-SIPS-----------------YAFNRVPSLMRL 176 (452)
T ss_dssp CEEECC----------SSCCSBCCTTTSSSCTTCCEEECCS-CCCC-EECT-----------------TTTTTCTTCCEE
T ss_pred CEEECC----------CCcCCccChhhhcccCCCCEEECCC-CCcc-eeCH-----------------hHHhcCCcccEE
Confidence 888776 3334434444566788888888888 5666 2332 112234556666
Q ss_pred EEcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCc
Q 044085 901 AIDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALP 980 (1151)
Q Consensus 901 ~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~ 980 (1151)
++++|..+..+ -+..+.++++|+.|++++|.++.++.....++|+.|+|++|.+.+..|
T Consensus 177 ~l~~~~~l~~i---------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 235 (452)
T 3zyi_A 177 DLGELKKLEYI---------------------SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRP 235 (452)
T ss_dssp ECCCCTTCCEE---------------------CTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECG
T ss_pred eCCCCCCcccc---------------------ChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCc
Confidence 66655433221 122467889999999999999988776556799999999999998888
Q ss_pred cccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 981 NGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 981 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
..|..+++|++|++++|.+.+..+..|..+++|+.|+|++|.++.++.. .+..+++|+.|++++|
T Consensus 236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLRYLVELHLHHN 300 (452)
T ss_dssp GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-SSTTCTTCCEEECCSS
T ss_pred ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH-HhccccCCCEEEccCC
Confidence 8999999999999999999988888899999999999999999987765 4788999999999986
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=4.6e-18 Score=188.10 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=40.3
Q ss_pred ceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCcc
Q 044085 743 KELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMA 799 (1151)
Q Consensus 743 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 799 (1151)
+.++.+++....+|..+ .++|+.|++++|.+....+ .++.+++|+.|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~ 63 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG 63 (306)
T ss_dssp TEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CEEEcCCCCcccCCCCC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc
Confidence 45667777777888754 4689999999998864433 47889999999998875
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=9.9e-19 Score=194.06 Aligned_cols=102 Identities=11% Similarity=0.153 Sum_probs=62.7
Q ss_pred CCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecC
Q 044085 941 SHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEG 1020 (1151)
Q Consensus 941 ~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~ 1020 (1151)
++|+.|++++|.++.++.....++|+.|++++|.+.+ +|..+..+++|++|++++|.+. .+|..+..+++|+.|++++
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRG 246 (317)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTT
T ss_pred CcCCEEECCCCcCcccccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccC
Confidence 3444444444444444333334466666666666654 3344677778888888888766 4666677778888888888
Q ss_pred CCcc-ccccccCCCCCCCcceEEecc
Q 044085 1021 PNIC-KLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1021 n~l~-~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
|.+. +..+. .+..+++|+.|++.+
T Consensus 247 N~~~~~~~~~-~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 247 NGFHCGTLRD-FFSKNQRVQTVAKQT 271 (317)
T ss_dssp CCCBHHHHHH-HHHTCHHHHHHHHHH
T ss_pred CCccCcCHHH-HHhccccceEEECCC
Confidence 8866 33322 255666677666664
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=9.1e-19 Score=193.86 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=59.4
Q ss_pred cCCCCcccEEEecCccccccCccccCCCcccEEEccccccc--ccchhhh-------cCCCCcEEecccccccccccccc
Q 044085 552 IPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIE--VLPESVS-------TLYNLQTLILERCYRLKKLFPDI 622 (1151)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~--~lp~~i~-------~L~~L~~L~L~~~~~l~~lp~~~ 622 (1151)
+...+.|++|++++|.+ .+|..+... |++|+|++|.++ .+|..+. ++++|++|++++|.....+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 45566777888888877 777666544 788888888775 3566555 67788888888874444667665
Q ss_pred --ccCCccCeeecCCCCc
Q 044085 623 --GNLTNLRHLKNSHSNL 638 (1151)
Q Consensus 623 --~~L~~L~~L~l~~~~~ 638 (1151)
..+++|++|++++|.+
T Consensus 116 ~~~~l~~L~~L~Ls~N~l 133 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSW 133 (312)
T ss_dssp SSCCSCCCSEEEEESCBC
T ss_pred HHhcCCCccEEEccCCCC
Confidence 7777788888777774
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=1e-18 Score=193.93 Aligned_cols=83 Identities=19% Similarity=0.275 Sum_probs=45.6
Q ss_pred hhhcCCCCcccEEEecCccccccC-ccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCc
Q 044085 549 FHVIPRLRRLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTN 627 (1151)
Q Consensus 549 ~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~ 627 (1151)
...+..+++|++|+|++|.++.++ ..|.++++|++|+|++|.++.++. +..+++|++|++++| .+..+| ..++
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~~~~ 100 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----VGPS 100 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----ECTT
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----CCCC
Confidence 344455556666666666665554 455666666666666666654443 555666666666655 344333 2255
Q ss_pred cCeeecCCCC
Q 044085 628 LRHLKNSHSN 637 (1151)
Q Consensus 628 L~~L~l~~~~ 637 (1151)
|++|++++|.
T Consensus 101 L~~L~l~~n~ 110 (317)
T 3o53_A 101 IETLHAANNN 110 (317)
T ss_dssp CCEEECCSSC
T ss_pred cCEEECCCCc
Confidence 5555555544
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=186.21 Aligned_cols=106 Identities=17% Similarity=0.048 Sum_probs=68.7
Q ss_pred CCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCC
Q 044085 740 YGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFP 818 (1151)
Q Consensus 740 ~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~ 818 (1151)
+.....+.+++....+|..+ .++|+.|++++|.+....+ .+..+++|+.|++++|......+..+. .++
T Consensus 31 ~~~~~c~~~~~~l~~iP~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~l~ 100 (353)
T 2z80_A 31 DRNGICKGSSGSLNSIPSGL----TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS------SLG 100 (353)
T ss_dssp CTTSEEECCSTTCSSCCTTC----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT------TCT
T ss_pred CCCeEeeCCCCCcccccccc----cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC------CCC
Confidence 33444666777788888765 3589999999998865554 688899999999998854332222232 266
Q ss_pred CcceeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcc
Q 044085 819 SLETLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLK 866 (1151)
Q Consensus 819 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 866 (1151)
+|++|+++ .+.+....+..+..+++|++|++++ +.++
T Consensus 101 ~L~~L~Ls----------~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~ 137 (353)
T 2z80_A 101 SLEHLDLS----------YNYLSNLSSSWFKPLSSLTFLNLLG-NPYK 137 (353)
T ss_dssp TCCEEECC----------SSCCSSCCHHHHTTCTTCSEEECTT-CCCS
T ss_pred CCCEEECC----------CCcCCcCCHhHhCCCccCCEEECCC-CCCc
Confidence 77777765 3333333333456677777777777 4555
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=4.8e-20 Score=225.40 Aligned_cols=208 Identities=17% Similarity=0.097 Sum_probs=106.3
Q ss_pred cCCCCcccEEEecCcccccc-Ccccc-CCCcccEEEcccc-cccc--cchhhhcCCCCcEEeccccccccc-----cccc
Q 044085 552 IPRLRRLRVLSLCGYWILQL-PNDIG-ELKHLRYLEFSRT-AIEV--LPESVSTLYNLQTLILERCYRLKK-----LFPD 621 (1151)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~~l-p~~i~-~l~~Lr~L~Ls~n-~i~~--lp~~i~~L~~L~~L~L~~~~~l~~-----lp~~ 621 (1151)
+..+++|++|+|++|.++.. +..+. .+++|++|+|++| .++. ++..+..+++|++|++++|. +.. ++..
T Consensus 101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~ 179 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHF 179 (594)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHH
Confidence 34567777777777765532 23343 5677777777776 4553 45555577777777777773 322 2222
Q ss_pred cccCCccCeeecCCCC--cc-ccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHH
Q 044085 622 IGNLTNLRHLKNSHSN--LF-EEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEA 698 (1151)
Q Consensus 622 ~~~L~~L~~L~l~~~~--~~-~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~ 698 (1151)
...+++|++|++++|. +. ..++.-+..+++|+.|++..+ ..... ...
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-----------------------------~~~~~-l~~ 229 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-----------------------------VPLEK-LAT 229 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-----------------------------SCHHH-HHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-----------------------------CcHHH-HHH
Confidence 3356677777777664 10 011111233455555543221 01111 333
Q ss_pred hcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceE-EEeecCCCCCCcccCCCCCCCeeEEEEecCCC
Q 044085 699 QLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKEL-KVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQ 777 (1151)
Q Consensus 699 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L-~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~ 777 (1151)
.+..+++|+.|.+..+.... . ...-......+..+++|+.| .+.+.....+|..+. .+++|+.|+|++|.+
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~--~----~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEV--R----PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYS--VCSRLTTLNLSYATV 301 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCC--C----HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHH--HHTTCCEEECTTCCC
T ss_pred HHhcCCcceEcccccccCcc--c----hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHH--hhCCCCEEEccCCCC
Confidence 44556677777765432100 0 00011122344556677766 222222222333322 256777777777774
Q ss_pred CCCC-C-CCCCCCCcceeeccCc
Q 044085 778 CTSL-P-SVGHLPSLKNLVIKGM 798 (1151)
Q Consensus 778 ~~~l-~-~l~~l~~L~~L~L~~~ 798 (1151)
.... . .+..+++|+.|++++|
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGG
T ss_pred CHHHHHHHHhcCCCcCEEeCcCc
Confidence 3211 1 2456677777777765
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=5.9e-18 Score=198.94 Aligned_cols=101 Identities=11% Similarity=0.158 Sum_probs=65.0
Q ss_pred CCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecC
Q 044085 941 SHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEG 1020 (1151)
Q Consensus 941 ~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~ 1020 (1151)
++|+.|++++|.++.++.....++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTT
T ss_pred CcccEEecCCCccccccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCC
Confidence 4444444444444444433334566666777666655 33447778888888888887774 677778888888888888
Q ss_pred CCcc-ccccccCCCCCCCcceEEec
Q 044085 1021 PNIC-KLFFDLGFHNLTSVRDLFIK 1044 (1151)
Q Consensus 1021 n~l~-~~~~~~~~~~l~~L~~L~l~ 1044 (1151)
|.+. +..+. .+..++.|+.|++.
T Consensus 247 N~l~c~~~~~-~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 NGFHCGTLRD-FFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCBCHHHHHH-HHTTCHHHHHHHHH
T ss_pred CCCcCcchHH-HHHhCCCCcEEecc
Confidence 8876 22222 25566777766664
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=9.7e-17 Score=175.32 Aligned_cols=219 Identities=16% Similarity=0.136 Sum_probs=126.2
Q ss_pred ceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcc
Q 044085 743 KELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLE 821 (1151)
Q Consensus 743 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 821 (1151)
..++..+.....+|..+ .++|+.|++++|.+....+ .++.+++|++|++++|......+..+. .+++|+
T Consensus 14 ~~~~c~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~------~l~~L~ 83 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT------GLALLE 83 (285)
T ss_dssp CEEECCSSCCSSCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT------TCTTCC
T ss_pred eEEEcCcCCcccCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC------CccCCC
Confidence 45666666667777643 4588888888888865544 578888888888888753322222221 144445
Q ss_pred eeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccccCccccCCCCCCcceEE
Q 044085 822 TLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSCEQLLVSYTALPPLCELA 901 (1151)
Q Consensus 822 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 901 (1151)
+|++++... +....+..+..+++|++|++++ +.+++..
T Consensus 84 ~L~l~~n~~---------l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~-------------------------------- 121 (285)
T 1ozn_A 84 QLDLSDNAQ---------LRSVDPATFHGLGRLHTLHLDR-CGLQELG-------------------------------- 121 (285)
T ss_dssp EEECCSCTT---------CCCCCTTTTTTCTTCCEEECTT-SCCCCCC--------------------------------
T ss_pred EEeCCCCCC---------ccccCHHHhcCCcCCCEEECCC-CcCCEEC--------------------------------
Confidence 544442111 1112233334445555555555 2333211
Q ss_pred EcCCCCccccCCCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCC--CCCccEEEEcCCCCcccC
Q 044085 902 IDGFWEVAWIRPEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGL--PSNLCSLTLFGCRYLTAL 979 (1151)
Q Consensus 902 l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~--~~~L~~L~L~~n~~~~~l 979 (1151)
+..+.++++|++|++++|.++.++...+ .++|+.|++++|.+.+..
T Consensus 122 --------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 122 --------------------------------PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp --------------------------------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred --------------------------------HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 2234455666666666666665554433 246666666666665544
Q ss_pred ccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 980 PNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 980 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++.+.. .+..+++|+.|++++|
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-ALAPLRALQYLRLNDN 235 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-HHTTCTTCCEEECCSS
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-HcccCcccCEEeccCC
Confidence 44566666777777777766666666666667777777777766655543 2556666666666663
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=6.3e-16 Score=168.85 Aligned_cols=134 Identities=17% Similarity=0.215 Sum_probs=85.6
Q ss_pred cccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCC
Q 044085 935 DGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPN 1012 (1151)
Q Consensus 935 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 1012 (1151)
..+.++++|++|++++|.++.++...+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 178 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence 3455667777777777777766544332 57777777777766555555667777777777777666544455666777
Q ss_pred ccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeC
Q 044085 1013 ITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCE 1090 (1151)
Q Consensus 1013 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~ 1090 (1151)
|+.|++++|.+++..+. .+.++++|+.|++++ +.++.++ .+..+++|++|++++
T Consensus 179 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~-----------------------n~l~~~~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 179 LDRLLLHQNRVAHVHPH-AFRDLGRLMTLYLFA-----------------------NNLSALPTEALAPLRALQYLRLND 234 (285)
T ss_dssp CCEEECCSSCCCEECTT-TTTTCTTCCEEECCS-----------------------SCCSCCCHHHHTTCTTCCEEECCS
T ss_pred cCEEECCCCcccccCHh-HccCcccccEeeCCC-----------------------CcCCcCCHHHcccCcccCEEeccC
Confidence 77777777776665433 356666666666666 2344444 355666777777776
Q ss_pred CC
Q 044085 1091 CP 1092 (1151)
Q Consensus 1091 c~ 1092 (1151)
|+
T Consensus 235 N~ 236 (285)
T 1ozn_A 235 NP 236 (285)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=1.2e-17 Score=184.77 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=66.8
Q ss_pred CCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCccc--Ccccc--CCCCccceeeecCCCCCc--cCC-CCCCCCC
Q 044085 941 SHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTA--LPNGI--YNLSSLQHLEIRACPRIA--SIP-EEVGFPP 1011 (1151)
Q Consensus 941 ~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~--l~~~l--~~l~~L~~L~L~~~~~~~--~~~-~~~~~l~ 1011 (1151)
++|++|++++|.++.++...+. ++|+.|++++|.+.+. +|..+ ..+++|++|++++|.+.+ .++ ..+..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 4555555555555444433221 3455555555544332 11222 444555555555554431 111 1122344
Q ss_pred CccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeC
Q 044085 1012 NITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCE 1090 (1151)
Q Consensus 1012 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~ 1090 (1151)
+|++|++++|.+++..+...+..+++|+.|++++| .++.+| .+. ++|++|++++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-----------------------~l~~ip~~~~--~~L~~L~Ls~ 283 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-----------------------GLKQVPKGLP--AKLSVLDLSY 283 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-----------------------CCSSCCSSCC--SEEEEEECCS
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-----------------------ccChhhhhcc--CCceEEECCC
Confidence 55555555555444332112334445555555442 344444 222 5566666665
Q ss_pred CCCCCcCCCCCCCCCcceEeeccCc
Q 044085 1091 CPNLISLPKNGLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1091 c~~l~~l~~~~~~~sL~~L~i~~c~ 1115 (1151)
| +++.+|.....++|+.|++++++
T Consensus 284 N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 284 N-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp S-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred C-CCCCChhHhhCCCCCEEeccCCC
Confidence 5 45555443334555666665553
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=8.5e-17 Score=189.03 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=59.4
Q ss_pred CCccEEEEeCCccccccCCCC--CCCccEEEEcCCCCcccCccccC-CCCccceeeecCCCCCccCCCCCCCCCCccEEE
Q 044085 941 SHITTISMYGSRLVSFAEGGL--PSNLCSLTLFGCRYLTALPNGIY-NLSSLQHLEIRACPRIASIPEEVGFPPNITELH 1017 (1151)
Q Consensus 941 ~~L~~L~ls~n~l~~~~~~~~--~~~L~~L~L~~n~~~~~l~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 1017 (1151)
++|+.|++++|.++.+++..+ .++|+.|+|++|.+.+..|..+. .+++|++|+|++|.+.+. |. ...+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEE
Confidence 444444444444444333222 13444444444444443333332 344444444444444432 11 12344444444
Q ss_pred ecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCC
Q 044085 1018 IEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECPN 1093 (1151)
Q Consensus 1018 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~ 1093 (1151)
|++|.++++++. +..+++|+.|++++ +.++.+| .+..+++|+.|++++|+.
T Consensus 198 Ls~N~l~~~~~~--~~~l~~L~~L~Ls~-----------------------N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 198 LSSNKLAFMGPE--FQSAAGVTWISLRN-----------------------NKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CCSSCCCEECGG--GGGGTTCSEEECTT-----------------------SCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCCCCCCCHh--HcCCCCccEEEecC-----------------------CcCcccchhhccCCCCCEEEcCCCCC
Confidence 444444443332 33444444444444 3455555 556677788888887753
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.67 E-value=1e-15 Score=166.71 Aligned_cols=197 Identities=17% Similarity=0.137 Sum_probs=141.6
Q ss_pred cccCCcccEEEeccCcCcccCCCCC-CCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccC
Q 044085 848 AKGFHSLRELSIINCSKLKGRLPQR-FSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEIS 926 (1151)
Q Consensus 848 ~~~l~~L~~L~l~~c~~L~~~~p~~-l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~ 926 (1151)
+..+++++.+++++ +.++ .+|.. .++++.|++.++...
T Consensus 6 ~~~l~~l~~l~~~~-~~l~-~ip~~~~~~l~~L~L~~N~l~--------------------------------------- 44 (290)
T 1p9a_G 6 VSKVASHLEVNCDK-RNLT-ALPPDLPKDTTILHLSENLLY--------------------------------------- 44 (290)
T ss_dssp EECSTTCCEEECTT-SCCS-SCCSCCCTTCCEEECTTSCCS---------------------------------------
T ss_pred ccccCCccEEECCC-CCCC-cCCCCCCCCCCEEEcCCCcCC---------------------------------------
Confidence 44678888999888 6777 56643 344555555444321
Q ss_pred CCCCCCCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCC
Q 044085 927 IPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEE 1006 (1151)
Q Consensus 927 ~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 1006 (1151)
...+..+.++++|+.|++++|.++.++.....++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..
T Consensus 45 ----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~ 119 (290)
T 1p9a_G 45 ----TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA 119 (290)
T ss_dssp ----EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSST
T ss_pred ----ccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHH
Confidence 1123456778888888888888888776655578888888888876 46777888888899999888888766677
Q ss_pred CCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCC
Q 044085 1007 VGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLE 1084 (1151)
Q Consensus 1007 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~ 1084 (1151)
|..+++|++|++++|.++.++.. .|..+++|+.|++++ +.++.++ .+..+++|+
T Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~-----------------------N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKTLPPG-LLTPTPKLEKLSLAN-----------------------NNLTELPAGLLNGLENLD 175 (290)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTT-----------------------SCCSCCCTTTTTTCTTCC
T ss_pred HcCCCCCCEEECCCCCCCccChh-hcccccCCCEEECCC-----------------------CcCCccCHHHhcCcCCCC
Confidence 88888899999998888877654 467788888888887 3455555 456677788
Q ss_pred eeeEeCCCCCCcCCCCC-CCCCcceEeeccCc
Q 044085 1085 RLTLCECPNLISLPKNG-LPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1085 ~L~l~~c~~l~~l~~~~-~~~sL~~L~i~~c~ 1115 (1151)
.|++++| .++.+|... ..++|+.|+++++|
T Consensus 176 ~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 176 TLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 8888777 677776642 23567777777654
No 77
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=5.3e-19 Score=216.13 Aligned_cols=384 Identities=16% Similarity=0.150 Sum_probs=204.5
Q ss_pred hhhhcCCCCcccEEEecCcc-cccc---Cc------------cccCCCcccEEEcccccccc-cchhhh-cCCCCcEEec
Q 044085 548 VFHVIPRLRRLRVLSLCGYW-ILQL---PN------------DIGELKHLRYLEFSRTAIEV-LPESVS-TLYNLQTLIL 609 (1151)
Q Consensus 548 ~~~~~~~l~~Lr~L~L~~~~-i~~l---p~------------~i~~l~~Lr~L~Ls~n~i~~-lp~~i~-~L~~L~~L~L 609 (1151)
+...+.+++.|+.|+++++. +..+ |. -...+++|++|+|++|.++. .+..+. .+++|++|++
T Consensus 58 ~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L 137 (594)
T 2p1m_B 58 PATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137 (594)
T ss_dssp HHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeC
Confidence 34567788999999999975 3222 21 12467889999999988773 345554 6889999999
Q ss_pred cccccccc--cccccccCCccCeeecCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCcc
Q 044085 610 ERCYRLKK--LFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLE 687 (1151)
Q Consensus 610 ~~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~ 687 (1151)
++|..+.. ++..+.++++|++|++++|.+....+..+..+.
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~------------------------------------- 180 (594)
T 2p1m_B 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP------------------------------------- 180 (594)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC-------------------------------------
T ss_pred CCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh-------------------------------------
Confidence 98855544 445456789999999988874332222221110
Q ss_pred CCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCe
Q 044085 688 NVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNL 767 (1151)
Q Consensus 688 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L 767 (1151)
..+++|+.|+++++.. . . . . .. ++.... .+++|
T Consensus 181 -------------~~~~~L~~L~l~~~~~-~-~--~-~-----~~----------------------l~~l~~--~~~~L 213 (594)
T 2p1m_B 181 -------------DTYTSLVSLNISCLAS-E-V--S-F-----SA----------------------LERLVT--RCPNL 213 (594)
T ss_dssp -------------TTCCCCCEEECTTCCS-C-C--C-H-----HH----------------------HHHHHH--HCTTC
T ss_pred -------------hcCCcCcEEEecccCC-c-C--C-H-----HH----------------------HHHHHH--hCCCC
Confidence 1122333333322210 0 0 0 0 00 000011 25788
Q ss_pred eEEEEecCCCCCCCC-CCCCCCCcceeeccCccC------ceEeCccccCCCCCCCCCCccee-eccccchhhhhhcccC
Q 044085 768 VVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAK------VKSVGLEFCGKYCSEPFPSLETL-CFEDMQELEEWISHAG 839 (1151)
Q Consensus 768 ~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~------l~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~~~~~~~ 839 (1151)
+.|++++|.....++ .+..+++|+.|.+..+.. +..++..+ ..+++|+.| .+.+..
T Consensus 214 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l------~~~~~L~~Ls~~~~~~---------- 277 (594)
T 2p1m_B 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL------SGCKELRCLSGFWDAV---------- 277 (594)
T ss_dssp CEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH------HTCTTCCEEECCBTCC----------
T ss_pred cEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH------hcCCCcccccCCcccc----------
Confidence 999998884333344 566789999999876642 00111111 125566665 222111
Q ss_pred CCCCcccccccCCcccEEEeccCcCcccCC----CCCCCCccEEEEccccCc---cccCCCCCCcceEEEcCCCCccccC
Q 044085 840 TAGGDQEAAKGFHSLRELSIINCSKLKGRL----PQRFSSLERVVIRSCEQL---LVSYTALPPLCELAIDGFWEVAWIR 912 (1151)
Q Consensus 840 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~----p~~l~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~~l~~~~ 912 (1151)
....+..+..+++|++|++++|+ +++.. ...+++|+.|.+.+|-.- ......+++|+.|++.+|.... .
T Consensus 278 -~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g--~ 353 (594)
T 2p1m_B 278 -PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFV--M 353 (594)
T ss_dssp -GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTC--S
T ss_pred -hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccc--c
Confidence 11223334468999999999975 65321 246788999999887210 1111236778888885542100 0
Q ss_pred CCCCcccccCcccCCCCCCCCccccCCCCCccEEEEeCCccccccCCCC---CCCccEEEEc-----CCCCcccC-----
Q 044085 913 PEESRAEVLPWEISIPDQESLPDGLHKLSHITTISMYGSRLVSFAEGGL---PSNLCSLTLF-----GCRYLTAL----- 979 (1151)
Q Consensus 913 ~~~~~l~~~~~~~~~~~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~---~~~L~~L~L~-----~n~~~~~l----- 979 (1151)
...+.+.. ..+.....++++|+.|.++.|.++......+ .++|+.|+++ +|...+..
T Consensus 354 ~~~~~l~~----------~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~ 423 (594)
T 2p1m_B 354 EPNVALTE----------QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423 (594)
T ss_dssp SCSSCCCH----------HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred ccCCCCCH----------HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence 00000000 0001111236777777777776654221111 2477777777 23322221
Q ss_pred -ccccCCCCccceeeecCCCCCccCCCCCC-CCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 980 -PNGIYNLSSLQHLEIRACPRIASIPEEVG-FPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 980 -~~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
+..+..+++|++|++++ .+....+..+. .+++|+.|+|++|.+++........++++|+.|+|++|
T Consensus 424 ~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 424 FGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 12245667777777765 33332222222 26677777777777654332211244566666666664
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=5.7e-15 Score=159.53 Aligned_cols=193 Identities=19% Similarity=0.255 Sum_probs=131.7
Q ss_pred CcccEEEeccCcCcccCCCCCC-CCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCC
Q 044085 852 HSLRELSIINCSKLKGRLPQRF-SSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQ 930 (1151)
Q Consensus 852 ~~L~~L~l~~c~~L~~~~p~~l-~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 930 (1151)
+..+.+++++ ++++ .+|..+ ++++.|++.++..
T Consensus 16 ~~~~~l~~~~-~~l~-~ip~~~~~~l~~L~l~~n~l-------------------------------------------- 49 (270)
T 2o6q_A 16 NNKNSVDCSS-KKLT-AIPSNIPADTKKLDLQSNKL-------------------------------------------- 49 (270)
T ss_dssp TTTTEEECTT-SCCS-SCCSCCCTTCSEEECCSSCC--------------------------------------------
T ss_pred CCCCEEEccC-CCCC-ccCCCCCCCCCEEECcCCCC--------------------------------------------
Confidence 4578899998 7888 677543 3455555544432
Q ss_pred CCCc-cccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCC
Q 044085 931 ESLP-DGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEV 1007 (1151)
Q Consensus 931 ~~l~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 1007 (1151)
..++ ..+.++++|++|++++|.++.++...+. ++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|
T Consensus 50 ~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 129 (270)
T 2o6q_A 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF 129 (270)
T ss_dssp SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh
Confidence 1222 3566788888888888888877765543 688888888888776555667788888888888888877666777
Q ss_pred CCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCe
Q 044085 1008 GFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLER 1085 (1151)
Q Consensus 1008 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~ 1085 (1151)
..+++|++|++++|.++..+.. .+..+++|+.|++++| .++.++ .+..+++|++
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n-----------------------~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNN-----------------------QLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSS-----------------------CCSCCCTTTTTTCTTCCE
T ss_pred CcCcCCCEEECCCCcCCccCHh-HccCCcccceeEecCC-----------------------cCcEeChhHhccCCCcCE
Confidence 7888888888888888776643 3677788888888772 333333 3556666667
Q ss_pred eeEeCCCCCCcCCCCC--CCCCcceEeeccCc
Q 044085 1086 LTLCECPNLISLPKNG--LPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1086 L~l~~c~~l~~l~~~~--~~~sL~~L~i~~c~ 1115 (1151)
|++++| .+..+|... ..++|+.|++++||
T Consensus 186 L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 186 LKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 777666 555555532 24566666666654
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=2.5e-15 Score=159.25 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=99.7
Q ss_pred cCCCCCccEEEEeCCc-cccccCCCCC--CCccEEEEcC-CCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCC
Q 044085 937 LHKLSHITTISMYGSR-LVSFAEGGLP--SNLCSLTLFG-CRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPN 1012 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~-l~~~~~~~~~--~~L~~L~L~~-n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 1012 (1151)
+.++++|++|++++|. ++.++...+. ++|++|++++ |.+.+..+..|..+++|++|++++|.+.+ +|. +..+++
T Consensus 51 ~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~ 128 (239)
T 2xwt_C 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYS 128 (239)
T ss_dssp TTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCB
T ss_pred ccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccc
Confidence 3445555555555554 5554443322 3555555555 44444333445555555555555555443 443 445555
Q ss_pred cc---EEEecCC-CccccccccCCCCCCCcc-eEEeccCCCCcccccC--C-CCCcceEEecCCCCCCcCC--CCCCC-C
Q 044085 1013 IT---ELHIEGP-NICKLFFDLGFHNLTSVR-DLFIKDGLEDEVSFQK--L-PNSLVKLNIREFPGLESLS--FVRNL-T 1081 (1151)
Q Consensus 1013 L~---~L~Ls~n-~l~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~--~-~~~L~~L~l~~c~~l~~l~--~l~~l-~ 1081 (1151)
|+ .|++++| .++.++.. .|.++++|+ .|++++|... .++. + ..+|+.|+++++.+++.++ .+..+ +
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred cccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 55 5555555 45544432 255555555 5555553222 1211 1 1356666666655677776 67888 9
Q ss_pred CCCeeeEeCCCCCCcCCCCCCCCCcceEeeccCchH
Q 044085 1082 SLERLTLCECPNLISLPKNGLPPSLVYVDIYSCPYL 1117 (1151)
Q Consensus 1082 ~L~~L~l~~c~~l~~l~~~~~~~sL~~L~i~~c~~L 1117 (1151)
+|+.|++++| .+..+|.. .+++|+.|++++|+.|
T Consensus 206 ~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 206 GPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp CCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 9999999998 78888876 4579999999998764
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=8.5e-15 Score=158.20 Aligned_cols=55 Identities=9% Similarity=0.091 Sum_probs=42.5
Q ss_pred CcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCcc
Q 044085 741 GLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMA 799 (1151)
Q Consensus 741 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 799 (1151)
..+.++++++....+|..+ .++++.|+|++|.+....+ .+..+++|++|++++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 72 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI----PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCC----CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc
Confidence 4677888888888888755 3578899999988865554 68888888888888774
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=4.7e-15 Score=157.06 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEe
Q 044085 752 GAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSV 804 (1151)
Q Consensus 752 ~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~ 804 (1151)
...+|. + .++|+.|++++|.+....+ .++.+++|+.|++++|..++.+
T Consensus 23 l~~ip~-~----~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i 71 (239)
T 2xwt_C 23 IQRIPS-L----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71 (239)
T ss_dssp CSSCCC-C----CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE
T ss_pred ccccCC-C----CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee
Confidence 555666 3 2478888888888765544 5777888888888877544444
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=1.4e-14 Score=162.91 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=68.9
Q ss_pred ceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCccccCCCCCCCCCCcc
Q 044085 743 KELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGLEFCGKYCSEPFPSLE 821 (1151)
Q Consensus 743 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~ 821 (1151)
+.++.+++..+.+|..+ .++++.|+|++|.+....+ .|..+++|++|+|++|...+.++..... .++++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l----~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~-----~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL----PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS-----NLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCTTC----CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC-----SCTTCC
T ss_pred CEEEecCCCCCccCcCc----CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh-----cchhhh
Confidence 45667777888888765 4689999999999865444 6889999999999999877766543211 144444
Q ss_pred eeeccccchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcc
Q 044085 822 TLCFEDMQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLK 866 (1151)
Q Consensus 822 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 866 (1151)
++.+.. .+.+....+..+..+++|++|++++ ++++
T Consensus 83 ~~l~~~---------~N~l~~l~~~~f~~l~~L~~L~l~~-n~l~ 117 (350)
T 4ay9_X 83 EIRIEK---------ANNLLYINPEAFQNLPNLQYLLISN-TGIK 117 (350)
T ss_dssp EEEEEE---------ETTCCEECTTSBCCCTTCCEEEEEE-ECCS
T ss_pred hhhccc---------CCcccccCchhhhhccccccccccc-cccc
Confidence 433322 2333333344556677777777777 4555
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=5.4e-15 Score=160.95 Aligned_cols=111 Identities=20% Similarity=0.175 Sum_probs=64.9
Q ss_pred CccccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCC
Q 044085 933 LPDGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFP 1010 (1151)
Q Consensus 933 l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l 1010 (1151)
+|..+.++++|+.|++++|.++.++...+. ++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+
T Consensus 92 l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 344455566677777777776666554332 466666666666655444445666666666666666654444444556
Q ss_pred CCccEEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 1011 PNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1011 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
++|+.|+|++|.++.++. .+..+.+|+.|++++
T Consensus 172 ~~L~~L~L~~N~l~~ip~--~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 172 ENLDTLLLQENSLYTIPK--GFFGSHLLPFAFLHG 204 (290)
T ss_dssp TTCCEEECCSSCCCCCCT--TTTTTCCCSEEECCS
T ss_pred CCCCEEECCCCcCCccCh--hhcccccCCeEEeCC
Confidence 666666666666665443 233445556666555
No 84
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=2.6e-14 Score=161.54 Aligned_cols=295 Identities=14% Similarity=0.151 Sum_probs=179.0
Q ss_pred CCCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC------
Q 044085 139 VDEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF------ 212 (1151)
Q Consensus 139 ~~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~------ 212 (1151)
..+..++||++++++|.+++... +++.|+|++|+|||||++++++.. + .+|+.+....
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~-------~-~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER-------P-GILIDCRELYAERGHI 72 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS-------S-EEEEEHHHHHHTTTCB
T ss_pred CChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc-------C-cEEEEeecccccccCC
Confidence 34567999999999999998652 489999999999999999998732 2 5677765432
Q ss_pred CHHHHHHHHHHHhcC-----------------CC--CCcchHHHHHHHHHHhcC-CceEEEEeCCCCCC-------hhhH
Q 044085 213 DAVGITKVILQAAVG-----------------SV--DVNDLNLLQLQLENQLKN-KKFLLVLDDMWTEN-------YDDW 265 (1151)
Q Consensus 213 ~~~~~~~~i~~~~~~-----------------~~--~~~~~~~~~~~l~~~l~~-k~~LlVlDdvw~~~-------~~~~ 265 (1151)
+...+.+.+...+.. .. ...+.+.+...+.+.... ++++||+||++.-+ ...+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 455666666554421 00 113455555666665543 49999999996522 1223
Q ss_pred HhhhccccCCCCCcEEEEecCcccc-ccc---------c-cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHH
Q 044085 266 TNLCKPFKAGLPGSKIIVTTRNEDV-SSM---------V-TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEI 334 (1151)
Q Consensus 266 ~~l~~~l~~~~~gs~iivTtr~~~v-~~~---------~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 334 (1151)
..+...... .++.++|+|++...+ ... . +.....+.+.+|+.+|+.+++....-. ...... .+.
T Consensus 153 ~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~-~~~~~~---~~~ 227 (350)
T 2qen_A 153 ALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE-VNLDVP---ENE 227 (350)
T ss_dssp HHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT-TTCCCC---HHH
T ss_pred HHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH-cCCCCC---HHH
Confidence 333332222 247789999876542 110 1 111127899999999999999765321 111112 267
Q ss_pred HHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHH-HHhhhcccCCCChhhHHHHH-HHhhcCCChhHHHHHhhhccCCCCc
Q 044085 335 GEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWED-VLNSKIWDLDEDKSGIMRAL-RVSYYYLPSHVKRCFAHCSLLPKGY 412 (1151)
Q Consensus 335 ~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~k~cf~~~s~fp~~~ 412 (1151)
+..|++.|+|+|+++..++..+....+...+.. ..+.. ...+...+ .+.+ + ++..+..+..+|. +
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~l~~-~-~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-------KGLIMGELEELRR-R-SPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHH-H-CHHHHHHHHHHHT---T-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH-------HHHHHHHHHHHHh-C-ChhHHHHHHHHHh---C-
Confidence 889999999999999999876533222222221 11100 00011111 1222 2 7788999998887 2
Q ss_pred ccChHHHHHHHHHcCCcccCCCCccHHHHHHHHHHHHHhCcccccccCCCceeehhHHHHHHHh
Q 044085 413 PFDERQIVLLWMAEGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRSKIDASWFLMHDLIHDLAS 476 (1151)
Q Consensus 413 ~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~a~ 476 (1151)
.++...+.....+.. ++.+ ......+++.|++.+++... +..+...|++++++.+
T Consensus 295 ~~~~~~l~~~~~~~~------~~~~-~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVKG------TKIP-EPRLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHTT------CCCC-HHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 234445544332211 0111 24567899999999999875 2333456889988765
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=1.6e-14 Score=167.19 Aligned_cols=313 Identities=14% Similarity=0.037 Sum_probs=186.8
Q ss_pred CCccccchhhHHHHHHHH-hcCCCCCCCCeEEEEE--ecCCCccHHHHHHHHhhchhhhc---cCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLL-RRDDLNSGRGFSVIPI--TGMGGLGKTTLAQLVFNDVRVEE---HFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~~wv~vs~~~~~ 214 (1151)
+..++||++++++|.+++ .....+.....+.+.| +|++|+||||||+.+++...... .|....+|+.+....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999998 5321100012346666 99999999999999998543211 12124577777677788
Q ss_pred HHHHHHHHHHhcCCC--CCcchHHHHHHHHHHhc--CCceEEEEeCCCCC------ChhhHHhhhccccCC---C--CCc
Q 044085 215 VGITKVILQAAVGSV--DVNDLNLLQLQLENQLK--NKKFLLVLDDMWTE------NYDDWTNLCKPFKAG---L--PGS 279 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~------~~~~~~~l~~~l~~~---~--~gs 279 (1151)
..++..++.+++... ...+.+.....+.+.+. +++++||+||+|.- +...+..+...+... . ...
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 899999999887321 12344556666666665 78999999999652 123444443333321 2 344
Q ss_pred EEEEecCcccccccc--------cCCCceeecCCCChhhhHHHHHHhh---cCCCCCCCCchHHHHHHHHHHHcC-----
Q 044085 280 KIIVTTRNEDVSSMV--------TTPSAAYSLENLLRDDCLSIFVRHS---LGRTDFSAHQYLSEIGEKIVDKCN----- 343 (1151)
Q Consensus 280 ~iivTtr~~~v~~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~~~~~~i~~~c~----- 343 (1151)
.||+||+...+.... ......+.+.+++.++++++|...+ +... ... .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGGTS
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhccC
Confidence 588888765532111 1112249999999999999997653 3211 112 367888999999
Q ss_pred -CChhHHHHHHHHh---c---CC--CCHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCChhHHHHHhhhccCC--CCc
Q 044085 344 -GSPLAAKTLGGLL---R---GK--YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLP--KGY 412 (1151)
Q Consensus 344 -g~Plai~~~~~~L---~---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp--~~~ 412 (1151)
|.|..+..+.... + +. .+.+.+..+...... ...+.-++..||++.+.++..++.+. .+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 9997666554332 1 11 123344433332110 23344567889999999998888654 333
Q ss_pred ccChHHHHHHHH--H-cCCcccCCCCccHHHHHHHHHHHHHhCcccccccC---CCceeehhHHH
Q 044085 413 PFDERQIVLLWM--A-EGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRSKI---DASWFLMHDLI 471 (1151)
Q Consensus 413 ~i~~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~---~~~~~~~H~lv 471 (1151)
.++...+...|. + .- .. ...........++++|++.+++..... ...+|++|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTM-YN---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SBCHHHHHHHHHHHHHHH-SC---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CccHHHHHHHHHHHHHhh-cC---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 555555554442 2 11 10 011112446678999999999976532 23445555443
No 86
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.60 E-value=1.3e-14 Score=163.18 Aligned_cols=95 Identities=22% Similarity=0.322 Sum_probs=62.5
Q ss_pred cEEEecCccccccCccccCCCcccEEEcccccccccch-hhhcCCCCcEEeccccccccccccc-cccCCccCeee-cCC
Q 044085 559 RVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPE-SVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLK-NSH 635 (1151)
Q Consensus 559 r~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~-l~~ 635 (1151)
++++.++++++++|..+ ..++++|+|++|.|+.+|. .|.++++|++|+|++|...+.+|.. |.++++|+++. ++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56778888888888766 3578888888888888876 4788888888888888545656543 67777766543 334
Q ss_pred CCccccCcccccCccCCCcc
Q 044085 636 SNLFEEMPLRIGKLTSLRTL 655 (1151)
Q Consensus 636 ~~~~~~~p~~i~~L~~L~~L 655 (1151)
|.+....|..+..+++|+.|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEE
T ss_pred CcccccCchhhhhccccccc
Confidence 44322223334444443333
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=1.7e-14 Score=156.64 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=54.5
Q ss_pred cCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCccCceEeCc-cccCCCCCCCCCCcceeeccc
Q 044085 750 YGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMAKVKSVGL-EFCGKYCSEPFPSLETLCFED 827 (1151)
Q Consensus 750 ~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~ 827 (1151)
.....+|..+ .++|+.|++++|.+....+ .+..+++|+.|++++|.. ..++. .+ ..+++|++|++++
T Consensus 17 ~~l~~ip~~l----~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~------~~l~~L~~L~L~~ 85 (276)
T 2z62_A 17 LNFYKIPDNL----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAY------QSLSHLSTLILTG 85 (276)
T ss_dssp SCCSSCCSSS----CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC-CEECTTTT------TTCTTCCEEECTT
T ss_pred CCccccCCCC----CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC-CccCHHHc------cCCcCCCEEECCC
Confidence 3445566644 2468888888888765554 677788888888888753 23322 22 1255555555552
Q ss_pred cchhhhhhcccCCCCCcccccccCCcccEEEeccCcCcc
Q 044085 828 MQELEEWISHAGTAGGDQEAAKGFHSLRELSIINCSKLK 866 (1151)
Q Consensus 828 ~~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 866 (1151)
+.+....+..+..+++|++|++++ ++++
T Consensus 86 ----------n~l~~~~~~~~~~l~~L~~L~l~~-n~l~ 113 (276)
T 2z62_A 86 ----------NPIQSLALGAFSGLSSLQKLVAVE-TNLA 113 (276)
T ss_dssp ----------CCCCEECTTTTTTCTTCCEEECTT-SCCC
T ss_pred ----------CccCccChhhhcCCccccEEECCC-CCcc
Confidence 222222334455566666666666 3444
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=2.5e-15 Score=165.50 Aligned_cols=190 Identities=21% Similarity=0.245 Sum_probs=116.6
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeec
Q 044085 554 RLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKN 633 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l 633 (1151)
.+++|++|++++|.+..+| .+..+++|++|+|++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEEC
Confidence 4566667777776666665 46666777777777777666655 666777777777766 455554 4666677777777
Q ss_pred CCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEe
Q 044085 634 SHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKW 713 (1151)
Q Consensus 634 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 713 (1151)
++|.+ ..+|. ++.+++|+.|++..+....... +..+++|+.|+++.
T Consensus 115 ~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~~~~~--------------------------------l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQI-TDVTP-LAGLSNLQVLYLDLNQITNISP--------------------------------LAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG--------------------------------GGGCTTCCEEECCS
T ss_pred CCCCC-CCchh-hcCCCCCCEEECCCCccCcCcc--------------------------------ccCCCCccEEEccC
Confidence 76663 33332 5666666666544332211100 22344555555555
Q ss_pred cCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCccee
Q 044085 714 GDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNL 793 (1151)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L 793 (1151)
|.... +..+..+++|+.|++++|....++. +. .+++|+.|++++|.+... +.+..+++|+.|
T Consensus 161 n~l~~--------------~~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L 222 (308)
T 1h6u_A 161 AQVSD--------------LTPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDV-SPLANTSNLFIV 222 (308)
T ss_dssp SCCCC--------------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBC-GGGTTCTTCCEE
T ss_pred CcCCC--------------ChhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCcc-ccccCCCCCCEE
Confidence 54321 1114556677777777777777665 22 477888888888877543 347778888888
Q ss_pred eccCcc
Q 044085 794 VIKGMA 799 (1151)
Q Consensus 794 ~L~~~~ 799 (1151)
++++|+
T Consensus 223 ~l~~N~ 228 (308)
T 1h6u_A 223 TLTNQT 228 (308)
T ss_dssp EEEEEE
T ss_pred EccCCe
Confidence 888775
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.58 E-value=5.5e-15 Score=160.51 Aligned_cols=54 Identities=11% Similarity=-0.056 Sum_probs=42.9
Q ss_pred eEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcceeeccCcc
Q 044085 744 ELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLKNLVIKGMA 799 (1151)
Q Consensus 744 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 799 (1151)
.|++++|....+|..... ..+|+.|++++|.+....+ .+..+++|+.|++++|+
T Consensus 181 ~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred eeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 677788877777776653 4589999999999865544 46889999999999986
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=6.9e-15 Score=161.91 Aligned_cols=154 Identities=19% Similarity=0.218 Sum_probs=76.3
Q ss_pred cCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEE
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITEL 1016 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 1016 (1151)
+.++++|+.|++++|.++.++...-.++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 156 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYL 156 (308)
T ss_dssp GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEE
Confidence 34445555555555555444322222345555555554433 22 14445555555555554443222 3444555555
Q ss_pred EecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCCc
Q 044085 1017 HIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLIS 1096 (1151)
Q Consensus 1017 ~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~ 1096 (1151)
++++|.+++.+. +.++++|+.|++++|.......-.-.++|+.|++++| .++.++.+..+++|+.|++++| .+..
T Consensus 157 ~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 157 SIGNAQVSDLTP---LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp ECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEE-EEEC
T ss_pred EccCCcCCCChh---hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCC-eeec
Confidence 555555444332 4445555555555432211110011234555555553 5666666788999999999998 4555
Q ss_pred CCC
Q 044085 1097 LPK 1099 (1151)
Q Consensus 1097 l~~ 1099 (1151)
.|.
T Consensus 232 ~~~ 234 (308)
T 1h6u_A 232 QPV 234 (308)
T ss_dssp CCE
T ss_pred CCe
Confidence 543
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=1.2e-14 Score=157.24 Aligned_cols=176 Identities=21% Similarity=0.173 Sum_probs=100.2
Q ss_pred CCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccc-cccCCccCeee
Q 044085 554 RLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLK 632 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~ 632 (1151)
.++.|+.|++++|.+..++ .+..+++|++|+|++|.++.++ .+..+++|++|++++| .+..+|.. +..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEE
Confidence 4566677777776666554 3666677777777777766653 5666777777777766 44444443 56677777777
Q ss_pred cCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEE
Q 044085 633 NSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK 712 (1151)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 712 (1151)
+++|.+....+..++.+++|++|++..+.....
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------------------------------------- 148 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL----------------------------------------------- 148 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-----------------------------------------------
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCcc-----------------------------------------------
Confidence 777664333333345555555554332211100
Q ss_pred ecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCC-CCCCCCCcc
Q 044085 713 WGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLP-SVGHLPSLK 791 (1151)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 791 (1151)
....+..+++|+.|++++|....+|..... .+++|+.|++++|.+....+ .++.+++|+
T Consensus 149 -------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 149 -------------------PKGVFDKLTNLTELDLSYNQLQSLPEGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp -------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -------------------CHHHhccCccCCEEECCCCCcCccCHHHhc-CCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 000122234455555555555555543321 36677777777777765444 366777777
Q ss_pred eeeccCcc
Q 044085 792 NLVIKGMA 799 (1151)
Q Consensus 792 ~L~L~~~~ 799 (1151)
.|++++|+
T Consensus 209 ~L~l~~N~ 216 (272)
T 3rfs_A 209 YIWLHDNP 216 (272)
T ss_dssp EEECCSSC
T ss_pred EEEccCCC
Confidence 77777764
No 92
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.57 E-value=3e-15 Score=134.34 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhc--ccCChhHHHHHHHHHHHHHhhHhHHHHhhhH
Q 044085 12 TVEMLVEKLASEVIQLFARRGQIEADLKKWEELLLTIKVVLDDAEEK--QITKPSVKTWLGKLQNLAFDAEDMLDEFATE 89 (1151)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~~d~ed~ld~~~~~ 89 (1151)
+++.+++||++.+.+++....+|++++++|+++|++|++||.+|+.+ +.++++++.|+++||++|||+||+||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888999999999999999999999999999999988 5688999999999999999999999999987
Q ss_pred HH
Q 044085 90 AF 91 (1151)
Q Consensus 90 ~~ 91 (1151)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 93
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.56 E-value=4.8e-14 Score=152.36 Aligned_cols=155 Identities=19% Similarity=0.185 Sum_probs=112.6
Q ss_pred ccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccE
Q 044085 936 GLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITE 1015 (1151)
Q Consensus 936 ~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 1015 (1151)
.+..+++|+.|++++|.++.++...-.++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 35678899999999998887764444468999999999888766666888899999999999888776777788899999
Q ss_pred EEecCCCccccccccCCCCCCCcceEEeccCCCCccccc--CCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCC
Q 044085 1016 LHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQ--KLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCEC 1091 (1151)
Q Consensus 1016 L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c 1091 (1151)
|++++|.+++.++. .+.++++|+.|++++|........ .-.++|+.|+++++ .++.++ .+..+++|+.|++++|
T Consensus 138 L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 138 LNLAHNQLQSLPKG-VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCccCccCHH-HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 99999988877654 367888899999988532211110 11246666666664 455554 3566677777777776
Q ss_pred C
Q 044085 1092 P 1092 (1151)
Q Consensus 1092 ~ 1092 (1151)
+
T Consensus 216 ~ 216 (272)
T 3rfs_A 216 P 216 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=156.87 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=24.8
Q ss_pred CCCeeEEEEecCCCCCCCC-CC--CCCCCcceeeccCcc
Q 044085 764 FKNLVVLRFRNCNQCTSLP-SV--GHLPSLKNLVIKGMA 799 (1151)
Q Consensus 764 ~~~L~~L~L~~~~~~~~l~-~l--~~l~~L~~L~L~~~~ 799 (1151)
+++|+.|++++|.+.+..| .+ ..+++|+.|++++|.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 128 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS 128 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc
Confidence 3457777777777766555 33 677777888777765
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.53 E-value=1.2e-13 Score=147.17 Aligned_cols=168 Identities=18% Similarity=0.239 Sum_probs=95.0
Q ss_pred ccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC
Q 044085 943 ITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN 1022 (1151)
Q Consensus 943 L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 1022 (1151)
.+.++++++.++.+|.. ++++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 16 ~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp GTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence 44455555555555432 23455555555555555444445555555555555555554444445555555555555555
Q ss_pred ccccccccCCCCCCCcceEEeccCCCCcccccC----CCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCc
Q 044085 1023 ICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK----LPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLIS 1096 (1151)
Q Consensus 1023 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~ 1096 (1151)
++..+.. .+.++++|+.|++++|... .++. -..+|+.|++++ ++++.++ .+..+++|++|+|++| .+..
T Consensus 95 l~~~~~~-~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 169 (251)
T 3m19_A 95 LASLPLG-VFDHLTQLDKLYLGGNQLK--SLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQS 169 (251)
T ss_dssp CCCCCTT-TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSC
T ss_pred ccccChh-HhcccCCCCEEEcCCCcCC--CcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCC-cCCc
Confidence 5544432 2455555555555553222 1111 123555555555 3666666 4778889999999988 6777
Q ss_pred CCCC--CCCCCcceEeeccCch
Q 044085 1097 LPKN--GLPPSLVYVDIYSCPY 1116 (1151)
Q Consensus 1097 l~~~--~~~~sL~~L~i~~c~~ 1116 (1151)
++.. ...++|+.|++++|+-
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCB
T ss_pred cCHHHHhCCCCCCEEEeeCCce
Confidence 7754 3357889999888754
No 96
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=2.2e-13 Score=154.39 Aligned_cols=293 Identities=13% Similarity=0.076 Sum_probs=171.8
Q ss_pred CCCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCC-----CCH
Q 044085 140 DEDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSED-----FDA 214 (1151)
Q Consensus 140 ~~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~-----~~~ 214 (1151)
.+..++||+++++.|.+ +.. +++.|+|++|+|||||++++++... ...+|+.+... .+.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINELN------LPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHHT------CCEEEEEGGGGTTCSCCCH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhcC------CCEEEEEchhhccccCCCH
Confidence 45679999999999999 642 4899999999999999999998432 23578887642 344
Q ss_pred HHHHHHHHHHhc-------------CC-------C----------CCcchHHHHHHHHHHhcCCceEEEEeCCCCCCh--
Q 044085 215 VGITKVILQAAV-------------GS-------V----------DVNDLNLLQLQLENQLKNKKFLLVLDDMWTENY-- 262 (1151)
Q Consensus 215 ~~~~~~i~~~~~-------------~~-------~----------~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-- 262 (1151)
......+.+.+. .. . .....+.+...+.+.-. ++++||+||++.-+.
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccC
Confidence 445444443321 00 0 01234444444443322 499999999954211
Q ss_pred -hhHHhhhccccCCCCCcEEEEecCcccccc-c---------cc-CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCch
Q 044085 263 -DDWTNLCKPFKAGLPGSKIIVTTRNEDVSS-M---------VT-TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQY 330 (1151)
Q Consensus 263 -~~~~~l~~~l~~~~~gs~iivTtr~~~v~~-~---------~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~ 330 (1151)
.+|..+...+.....+.++|+|++...... . .. .....+.+.+|+.+|+.+++....-... ....+
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~- 231 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDFKD- 231 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCCCC-
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCCCc-
Confidence 122222222222224678999998754211 1 11 1113789999999999999987532111 11111
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhcCCCCHHHHHHHHhhhcccCCCChhhHHHHHH-Hhhc--CCChhHHHHHhhhcc
Q 044085 331 LSEIGEKIVDKCNGSPLAAKTLGGLLRGKYDPKDWEDVLNSKIWDLDEDKSGIMRALR-VSYY--YLPSHVKRCFAHCSL 407 (1151)
Q Consensus 331 ~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~-~sy~--~L~~~~k~cf~~~s~ 407 (1151)
...|++.|+|+|+++..++..+....+...|..-.-.. ....+...+. +.++ .+|+..+..+..+|.
T Consensus 232 ----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEY------AKKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHH------HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHH------HHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 17899999999999999988765333333343211000 0011222222 2222 678889999999998
Q ss_pred CCCCcccChHHHHHHHH-HcCCcccCCCCccHHHHHHHHHHHHHhCcccccccCCCceeehhHHHHHHH
Q 044085 408 LPKGYPFDERQIVLLWM-AEGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRSKIDASWFLMHDLIHDLA 475 (1151)
Q Consensus 408 fp~~~~i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~H~lv~~~a 475 (1151)
+. +...+....- ..|. .........+++.|++.++|.... ..+...|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 22 3344332210 1121 011244678899999999998752 23334689998864
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.52 E-value=1.9e-13 Score=145.64 Aligned_cols=134 Identities=16% Similarity=0.191 Sum_probs=101.9
Q ss_pred cccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCC
Q 044085 935 DGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPN 1012 (1151)
Q Consensus 935 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~ 1012 (1151)
..+.++++|++|++++|.++.++...+. ++|+.|+|++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 132 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK 132 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence 3466778888888888888877665443 68888888888887766667788888888888888877665666678888
Q ss_pred ccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeC
Q 044085 1013 ITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCE 1090 (1151)
Q Consensus 1013 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~ 1090 (1151)
|+.|+|++|.+++++.. .+.++++|+.|++++ +.++.++ .+..+++|+.|++++
T Consensus 133 L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 133 LKELRLNTNQLQSIPAG-AFDKLTNLQTLSLST-----------------------NQLQSVPHGAFDRLGKLQTITLFG 188 (251)
T ss_dssp CCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS-----------------------SCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ccEEECcCCcCCccCHH-HcCcCcCCCEEECCC-----------------------CcCCccCHHHHhCCCCCCEEEeeC
Confidence 88888888888876653 377788888888887 3455554 567788899999988
Q ss_pred CC
Q 044085 1091 CP 1092 (1151)
Q Consensus 1091 c~ 1092 (1151)
|+
T Consensus 189 N~ 190 (251)
T 3m19_A 189 NQ 190 (251)
T ss_dssp CC
T ss_pred Cc
Confidence 85
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.50 E-value=8.2e-14 Score=153.89 Aligned_cols=205 Identities=18% Similarity=0.122 Sum_probs=143.4
Q ss_pred CCCcccEEEecCccccc-cCccc--cCCCcccEEEccccccccc-c----hhhhcCCCCcEEeccccccccccccccccC
Q 044085 554 RLRRLRVLSLCGYWILQ-LPNDI--GELKHLRYLEFSRTAIEVL-P----ESVSTLYNLQTLILERCYRLKKLFPDIGNL 625 (1151)
Q Consensus 554 ~l~~Lr~L~L~~~~i~~-lp~~i--~~l~~Lr~L~Ls~n~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L 625 (1151)
.++.|++|++++|.+.. .|..+ .++++|++|+|++|.++.. | ..+..+++|++|++++|......|..+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 34669999999999874 56776 8999999999999999852 2 345679999999999994434444678999
Q ss_pred CccCeeecCCCCcccc--Cc--ccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcC
Q 044085 626 TNLRHLKNSHSNLFEE--MP--LRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLN 701 (1151)
Q Consensus 626 ~~L~~L~l~~~~~~~~--~p--~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~ 701 (1151)
++|++|++++|.+.+. ++ ..++.+++|++|++..+... .........+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---------------------------~l~~~~~~l~~ 221 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME---------------------------TPTGVCAALAA 221 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC---------------------------CHHHHHHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC---------------------------chHHHHHHHHh
Confidence 9999999999985432 22 33468888888876655321 11111112245
Q ss_pred CCCCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCC
Q 044085 702 GKEKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSL 781 (1151)
Q Consensus 702 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l 781 (1151)
.+++|+.|++++|.+..... ..+..+..+++|+.|++++|....+|.++ +++|+.|+|++|.+.+ +
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p---------~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~-~ 287 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVN---------PSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNR-A 287 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCC---------SCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCS-C
T ss_pred cCCCCCEEECCCCCCCccch---------hhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCC-C
Confidence 66788888888877643110 01122233468888888888888887765 3688888888888754 3
Q ss_pred CCCCCCCCcceeeccCcc
Q 044085 782 PSVGHLPSLKNLVIKGMA 799 (1151)
Q Consensus 782 ~~l~~l~~L~~L~L~~~~ 799 (1151)
|.+..+++|+.|++++|+
T Consensus 288 ~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTSCCCCSCEECSSTT
T ss_pred chhhhCCCccEEECcCCC
Confidence 556777888888888875
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=1.9e-15 Score=169.80 Aligned_cols=108 Identities=20% Similarity=0.156 Sum_probs=79.9
Q ss_pred hcCCC--CcccEEEecCccccccCccccCCCcccEEEcccccccc--cchhhhcCCCCcEEeccccccccccccccccCC
Q 044085 551 VIPRL--RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEV--LPESVSTLYNLQTLILERCYRLKKLFPDIGNLT 626 (1151)
Q Consensus 551 ~~~~l--~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~ 626 (1151)
.+..+ +.+++|++++|.+...+..+.++++|++|+|++|.++. +|..+..+++|++|++++|......|..+..++
T Consensus 63 ~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~ 142 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142 (336)
T ss_dssp HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence 34455 77888888888888777667788889999998888773 777788888899999888854445667788888
Q ss_pred ccCeeecCCC-Cccc-cCcccccCccCCCccCee
Q 044085 627 NLRHLKNSHS-NLFE-EMPLRIGKLTSLRTLAKF 658 (1151)
Q Consensus 627 ~L~~L~l~~~-~~~~-~~p~~i~~L~~L~~L~~~ 658 (1151)
+|++|++++| .+.. .++..+..+++|++|++.
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 8888888888 4322 245556666666666543
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=5.1e-15 Score=166.24 Aligned_cols=109 Identities=13% Similarity=0.105 Sum_probs=63.8
Q ss_pred cCCCCCccEEEEeCC-ccccc--cC--CCCCCCccEEEEcCCC--Cc-ccCccccCCCCccceeeecCCC-CCccCCCCC
Q 044085 937 LHKLSHITTISMYGS-RLVSF--AE--GGLPSNLCSLTLFGCR--YL-TALPNGIYNLSSLQHLEIRACP-RIASIPEEV 1007 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n-~l~~~--~~--~~~~~~L~~L~L~~n~--~~-~~l~~~l~~l~~L~~L~L~~~~-~~~~~~~~~ 1007 (1151)
+.++++|++|++++| .++.. +. ..++.+|++|++++|. +. ..+|..+..+++|++|++++|. +....+..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 344566666666666 55431 11 0111267777777763 33 3345556677778888887777 444555566
Q ss_pred CCCCCccEEEecCCC-ccccccccCCCCCCCcceEEeccC
Q 044085 1008 GFPPNITELHIEGPN-ICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 1008 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
..+++|++|++++|. +...... .+.++++|+.|++++|
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTS
T ss_pred hCCCCCCEeeCCCCCCCCHHHHH-HHhcCCCCCEEeccCc
Confidence 677778888887775 3322111 2556677777777763
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=1.7e-13 Score=139.92 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=87.4
Q ss_pred CCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEe
Q 044085 939 KLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHI 1018 (1151)
Q Consensus 939 ~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L 1018 (1151)
.+++|+.|++++|.+++++.....++|+.|++++|.+.. + ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN-Y-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSC-C-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCc-c-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 355666777777766665533333567777777774332 2 35666777777777777776656666677777777777
Q ss_pred cCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCCcCC
Q 044085 1019 EGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLISLP 1098 (1151)
Q Consensus 1019 s~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~~l~ 1098 (1151)
++|.+++..+. .+..+++|+.|++++| ..++.++.+.++++|++|++++| .+..++
T Consensus 120 s~n~i~~~~~~-~l~~l~~L~~L~L~~n----------------------~~i~~~~~l~~l~~L~~L~l~~n-~i~~~~ 175 (197)
T 4ezg_A 120 SHSAHDDSILT-KINTLPKVNSIDLSYN----------------------GAITDIMPLKTLPELKSLNIQFD-GVHDYR 175 (197)
T ss_dssp CSSBCBGGGHH-HHTTCSSCCEEECCSC----------------------TBCCCCGGGGGCSSCCEEECTTB-CCCCCT
T ss_pred cCCccCcHhHH-HHhhCCCCCEEEccCC----------------------CCccccHhhcCCCCCCEEECCCC-CCcChH
Confidence 77776653322 2556666666666652 12333344445555555555555 344444
Q ss_pred CCCCCCCcceEeeccCc
Q 044085 1099 KNGLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1099 ~~~~~~sL~~L~i~~c~ 1115 (1151)
.....++|+.|++++++
T Consensus 176 ~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 176 GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TGGGCSSCCEEEECBC-
T ss_pred HhccCCCCCEEEeeCcc
Confidence 32334555666655543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=1.9e-13 Score=148.96 Aligned_cols=169 Identities=17% Similarity=0.189 Sum_probs=117.3
Q ss_pred CCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeee
Q 044085 553 PRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLK 632 (1151)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 632 (1151)
..+++|++|++++|.+..++. +..+++|++|+|++|.++.++. +..+++|++|++++| .+..+|. +..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 456778888888888888864 7888888888888888888876 888888888888888 6666654 88888888888
Q ss_pred cCCCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEE
Q 044085 633 NSHSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLK 712 (1151)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 712 (1151)
+++|.+. .+ ..++.+++|+.|++..+.....
T Consensus 119 L~~n~i~-~~-~~l~~l~~L~~L~l~~n~l~~~----------------------------------------------- 149 (291)
T 1h6t_A 119 LEHNGIS-DI-NGLVHLPQLESLYLGNNKITDI----------------------------------------------- 149 (291)
T ss_dssp CTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCC-----------------------------------------------
T ss_pred CCCCcCC-CC-hhhcCCCCCCEEEccCCcCCcc-----------------------------------------------
Confidence 8888743 33 3466666666665443321110
Q ss_pred ecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcce
Q 044085 713 WGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKN 792 (1151)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~ 792 (1151)
..+..+++|+.|++++|....++. +. .+++|+.|++++|.+. .++.+..+++|+.
T Consensus 150 ---------------------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~-~l~~l~~l~~L~~ 204 (291)
T 1h6t_A 150 ---------------------TVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHIS-DLRALAGLKNLDV 204 (291)
T ss_dssp ---------------------GGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCC-BCGGGTTCTTCSE
T ss_pred ---------------------hhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCC-CChhhccCCCCCE
Confidence 112233456666666666666655 33 4778888888888774 3456777888888
Q ss_pred eeccCcc
Q 044085 793 LVIKGMA 799 (1151)
Q Consensus 793 L~L~~~~ 799 (1151)
|++++|+
T Consensus 205 L~l~~n~ 211 (291)
T 1h6t_A 205 LELFSQE 211 (291)
T ss_dssp EEEEEEE
T ss_pred EECcCCc
Confidence 8888775
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=8.5e-13 Score=137.08 Aligned_cols=146 Identities=16% Similarity=0.239 Sum_probs=97.0
Q ss_pred cEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCc
Q 044085 944 TTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNI 1023 (1151)
Q Consensus 944 ~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 1023 (1151)
+.++.+++.++.+|.. ++++|+.|++++|.+.+..+..|..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 4667777777777653 446777788877777765555677777888888888777766677777778888888888877
Q ss_pred cccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCcCCCC-
Q 044085 1024 CKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLISLPKN- 1100 (1151)
Q Consensus 1024 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~- 1100 (1151)
+.++.. .|.++++|+.|++++ +.++.++ .+..+++|++|+|++| .+..++..
T Consensus 93 ~~l~~~-~f~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 147 (220)
T 2v9t_B 93 TELPKS-LFEGLFSLQLLLLNA-----------------------NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGT 147 (220)
T ss_dssp CCCCTT-TTTTCTTCCEEECCS-----------------------SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred CccCHh-HccCCCCCCEEECCC-----------------------CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHH
Confidence 766543 366777777777777 2333332 4556666666666666 45555543
Q ss_pred -CCCCCcceEeeccCc
Q 044085 1101 -GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1101 -~~~~sL~~L~i~~c~ 1115 (1151)
...++|+.|+++++|
T Consensus 148 ~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred HhCCCCCCEEEeCCCC
Confidence 223566666666654
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=4.9e-15 Score=169.57 Aligned_cols=215 Identities=21% Similarity=0.184 Sum_probs=121.2
Q ss_pred hhhhcCCCCcccEEEecCccccc-----cCccccCCCcccEEEccccccc----ccchhh-------hcCCCCcEEeccc
Q 044085 548 VFHVIPRLRRLRVLSLCGYWILQ-----LPNDIGELKHLRYLEFSRTAIE----VLPESV-------STLYNLQTLILER 611 (1151)
Q Consensus 548 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~Lr~L~Ls~n~i~----~lp~~i-------~~L~~L~~L~L~~ 611 (1151)
+...+..+++|++|+|++|.+.. ++..+.++++|++|+|++|.+. .+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34456677888888888887764 3455778888888888886554 334444 6788888888888
Q ss_pred cccccc-----cccccccCCccCeeecCCCCccccCccc----ccCc---------cCCCccCeeEeccCCCCCcccccc
Q 044085 612 CYRLKK-----LFPDIGNLTNLRHLKNSHSNLFEEMPLR----IGKL---------TSLRTLAKFAVGKSNCSGLRELRS 673 (1151)
Q Consensus 612 ~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~~p~~----i~~L---------~~L~~L~~~~~~~~~~~~l~~L~~ 673 (1151)
| .+.. +|..+..+++|++|++++|.+....+.. +..+ ++|++|++..+.....
T Consensus 104 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~-------- 174 (386)
T 2ca6_A 104 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG-------- 174 (386)
T ss_dssp C-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG--------
T ss_pred C-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH--------
Confidence 8 4443 6777888888888888888854322222 2223 5555554433321100
Q ss_pred cccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEecCCCCCCCCchhhHHHHhHhh-ccCCCCCcceEEEeecCC
Q 044085 674 LTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWGDKTTNSDSREVAEIQTRVLE-MLKPHYGLKELKVQGYGG 752 (1151)
Q Consensus 674 L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~ 752 (1151)
.-......+..+++|+.|++++|.+.. ... ..... .+..+++|+.|++++|..
T Consensus 175 ------------------~~~~l~~~l~~~~~L~~L~L~~n~l~~-------~g~-~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 175 ------------------SMKEWAKTFQSHRLLHTVKMVQNGIRP-------EGI-EHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp ------------------GHHHHHHHHHHCTTCCEEECCSSCCCH-------HHH-HHHHHTTGGGCTTCCEEECCSSCC
T ss_pred ------------------HHHHHHHHHHhCCCcCEEECcCCCCCH-------hHH-HHHHHHHhhcCCCccEEECcCCCC
Confidence 001111234445566666666665421 000 01122 444555666666666554
Q ss_pred -----CCCCcccCCCCCCCeeEEEEecCCCCCC----CC-CC--CCCCCcceeeccCcc
Q 044085 753 -----AKLPTWLGQSSFKNLVVLRFRNCNQCTS----LP-SV--GHLPSLKNLVIKGMA 799 (1151)
Q Consensus 753 -----~~~p~~~~~~~~~~L~~L~L~~~~~~~~----l~-~l--~~l~~L~~L~L~~~~ 799 (1151)
..+|.++. .+++|+.|+|++|.+... ++ .+ +.+++|+.|+|++|.
T Consensus 229 ~~~g~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 229 THLGSSALAIALK--SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHHGG--GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred CcHHHHHHHHHHc--cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 33444443 255666666666665432 12 22 335666666666554
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.44 E-value=3.2e-13 Score=137.82 Aligned_cols=136 Identities=17% Similarity=0.239 Sum_probs=114.4
Q ss_pred CCCCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCC
Q 044085 930 QESLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGF 1009 (1151)
Q Consensus 930 ~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 1009 (1151)
+..+| .+..+++|++|++++|.++.++.....++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..
T Consensus 56 i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 56 VTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp CSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred ccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 34555 57889999999999998887765444579999999999998877888999999999999999998877888899
Q ss_pred CCCccEEEecCCC-ccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeE
Q 044085 1010 PPNITELHIEGPN-ICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTL 1088 (1151)
Q Consensus 1010 l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l 1088 (1151)
+++|++|++++|. ++.++ .+.++++|+.|++++ +.++.++.+..+++|++|++
T Consensus 135 l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~-----------------------n~i~~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQF-----------------------DGVHDYRGIEDFPKLNQLYA 188 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTT-----------------------BCCCCCTTGGGCSSCCEEEE
T ss_pred CCCCCEEEccCCCCccccH---hhcCCCCCCEEECCC-----------------------CCCcChHHhccCCCCCEEEe
Confidence 9999999999998 87765 477888888888888 34555666778899999999
Q ss_pred eCCC
Q 044085 1089 CECP 1092 (1151)
Q Consensus 1089 ~~c~ 1092 (1151)
++|+
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 9984
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1.2e-12 Score=154.45 Aligned_cols=162 Identities=26% Similarity=0.310 Sum_probs=126.8
Q ss_pred CCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCC
Q 044085 932 SLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPP 1011 (1151)
Q Consensus 932 ~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 1011 (1151)
.+|..+ +++|++|++++|.|+.+| .++++|+.|++++|.+.+ +|. +.. +|++|++++|.+.+ +|. .++
T Consensus 73 ~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~ 140 (571)
T 3cvr_A 73 SLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPA 140 (571)
T ss_dssp CCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCT
T ss_pred ccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCc
Confidence 355544 378999999999999888 556799999999998877 666 554 99999999998876 665 689
Q ss_pred CccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCC-------C
Q 044085 1012 NITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSL-------E 1084 (1151)
Q Consensus 1012 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L-------~ 1084 (1151)
+|+.|++++|.+++++. .+++|+.|++++|.. ..++.++++|+.|+++++ +++.+|.+.. +| +
T Consensus 141 ~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L--~~lp~l~~~L~~L~Ls~N-~L~~lp~~~~--~L~~~~~~L~ 210 (571)
T 3cvr_A 141 LLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQL--TFLPELPESLEALDVSTN-LLESLPAVPV--RNHHSEETEI 210 (571)
T ss_dssp TCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSS-CCSSCCCCC----------CCE
T ss_pred cccEEeCCCCccCcCCC-----cCCCcCEEECCCCCC--CCcchhhCCCCEEECcCC-CCCchhhHHH--hhhcccccce
Confidence 99999999999987653 578999999998643 335556689999999985 7888876333 67 9
Q ss_pred eeeEeCCCCCCcCCCC-CCCCCcceEeeccCch
Q 044085 1085 RLTLCECPNLISLPKN-GLPPSLVYVDIYSCPY 1116 (1151)
Q Consensus 1085 ~L~l~~c~~l~~l~~~-~~~~sL~~L~i~~c~~ 1116 (1151)
.|++++| .+..+|.. ...++|+.|++++|+-
T Consensus 211 ~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 211 FFRCREN-RITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp EEECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred EEecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence 9999998 78888874 3468899999999964
No 107
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.43 E-value=1.1e-12 Score=137.23 Aligned_cols=147 Identities=23% Similarity=0.227 Sum_probs=113.2
Q ss_pred ccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC
Q 044085 943 ITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN 1022 (1151)
Q Consensus 943 L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 1022 (1151)
-+.++.+++.++.+|.. ++++|+.|+|++|.+.+..|..+..+++|++|+|++|.+....+..|..+++|+.|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 45688888888888764 45799999999999888778888899999999999998866555667889999999999999
Q ss_pred ccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCCCCCCCeeeEeCCCCCCcCCCC-
Q 044085 1023 ICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRNLTSLERLTLCECPNLISLPKN- 1100 (1151)
Q Consensus 1023 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~l~~L~~L~l~~c~~l~~l~~~- 1100 (1151)
++.++.. .|..+++|+.|++++ ++++.+| .+..+++|++|+|++| .+..++..
T Consensus 100 l~~l~~~-~~~~l~~L~~L~Ls~-----------------------N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~ 154 (229)
T 3e6j_A 100 LTVLPSA-VFDRLVHLKELFMCC-----------------------NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGA 154 (229)
T ss_dssp CCCCCTT-TTTTCTTCCEEECCS-----------------------SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTT
T ss_pred CCccChh-HhCcchhhCeEeccC-----------------------CcccccCcccccCCCCCEEECCCC-cCCccCHHH
Confidence 8877654 477888888888888 3444454 4566777888888877 67776653
Q ss_pred -CCCCCcceEeeccCc
Q 044085 1101 -GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1101 -~~~~sL~~L~i~~c~ 1115 (1151)
...++|+.|+++++|
T Consensus 155 ~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp TTTCTTCCEEECTTSC
T ss_pred HhCCCCCCEEEeeCCC
Confidence 234677888887765
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=4.5e-13 Score=145.92 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=65.7
Q ss_pred cCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEE
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITEL 1016 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 1016 (1151)
+..+++|+.|++++|.++.++...-.++|+.|++++|.+.+ ++ .+..+++|++|++++|.+.+. ..+..+++|+.|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 34445555555555555544432222455555555555433 21 244555555555555544431 223445555555
Q ss_pred EecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCC
Q 044085 1017 HIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCEC 1091 (1151)
Q Consensus 1017 ~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c 1091 (1151)
++++|.+++.. .+..+++|+.|++++|.......-.-.++|+.|+++++ .++.++.+..+++|+.|++++|
T Consensus 140 ~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 140 YLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp ECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEE
T ss_pred EccCCcCCcch---hhccCCCCCEEEccCCccccchhhcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCC
Confidence 55555554442 24445555555555432211110111234445555443 3444444444455555555444
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=8e-13 Score=155.99 Aligned_cols=174 Identities=20% Similarity=0.275 Sum_probs=112.3
Q ss_pred cccEEEeccCcCcccCCCC-CCCCccEEEEccccCccccCCCCCCcceEEEcCCCCccccCCCCCcccccCcccCCCCCC
Q 044085 853 SLRELSIINCSKLKGRLPQ-RFSSLERVVIRSCEQLLVSYTALPPLCELAIDGFWEVAWIRPEESRAEVLPWEISIPDQE 931 (1151)
Q Consensus 853 ~L~~L~l~~c~~L~~~~p~-~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 931 (1151)
+|+.|++++ +++++ +|. .+++|+.|++.++...
T Consensus 60 ~L~~L~Ls~-n~L~~-lp~~l~~~L~~L~Ls~N~l~-------------------------------------------- 93 (571)
T 3cvr_A 60 QFSELQLNR-LNLSS-LPDNLPPQITVLEITQNALI-------------------------------------------- 93 (571)
T ss_dssp TCSEEECCS-SCCSC-CCSCCCTTCSEEECCSSCCS--------------------------------------------
T ss_pred CccEEEeCC-CCCCc-cCHhHcCCCCEEECcCCCCc--------------------------------------------
Confidence 899999999 57884 664 3455655555544322
Q ss_pred CCccccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCC
Q 044085 932 SLPDGLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPP 1011 (1151)
Q Consensus 932 ~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~ 1011 (1151)
.+| ..+++|+.|++++|.|+.+|. ++.+|+.|++++|.+.+ +|. .+++|++|++++|.+.+ +|. .++
T Consensus 94 ~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~ 160 (571)
T 3cvr_A 94 SLP---ELPASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPT 160 (571)
T ss_dssp CCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCT
T ss_pred ccc---cccCCCCEEEccCCCCCCcch--hhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCC
Confidence 233 235667777777777766665 44577777777776655 444 46677777777776654 453 456
Q ss_pred CccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCc-------ceEEecCCCCCCcCC-CCCCCCCC
Q 044085 1012 NITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSL-------VKLNIREFPGLESLS-FVRNLTSL 1083 (1151)
Q Consensus 1012 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L-------~~L~l~~c~~l~~l~-~l~~l~~L 1083 (1151)
+|+.|+|++|.+++++. +. ++|+.|++++|... .++.++.+| +.|++++ +.++.+| .+..+++|
T Consensus 161 ~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~N~L~--~lp~~~~~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 161 SLEVLSVRNNQLTFLPE---LP--ESLEALDVSTNLLE--SLPAVPVRNHHSEETEIFFRCRE-NRITHIPENILSLDPT 232 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CC--TTCCEEECCSSCCS--SCCCCC--------CCEEEECCS-SCCCCCCGGGGGSCTT
T ss_pred CcCEEECCCCCCCCcch---hh--CCCCEEECcCCCCC--chhhHHHhhhcccccceEEecCC-CcceecCHHHhcCCCC
Confidence 77777777777666543 22 67777777764322 444454566 8888887 4788888 46669999
Q ss_pred CeeeEeCCCC
Q 044085 1084 ERLTLCECPN 1093 (1151)
Q Consensus 1084 ~~L~l~~c~~ 1093 (1151)
+.|+|++|+-
T Consensus 233 ~~L~L~~N~l 242 (571)
T 3cvr_A 233 CTIILEDNPL 242 (571)
T ss_dssp EEEECCSSSC
T ss_pred CEEEeeCCcC
Confidence 9999999954
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=1.5e-14 Score=163.53 Aligned_cols=85 Identities=15% Similarity=0.011 Sum_probs=46.6
Q ss_pred CccEEEEeCCccccc-----cCC--CCCCCccEEEEcCCCCcccCc----cccCCCCccceeeecCCCCCc-------cC
Q 044085 942 HITTISMYGSRLVSF-----AEG--GLPSNLCSLTLFGCRYLTALP----NGIYNLSSLQHLEIRACPRIA-------SI 1003 (1151)
Q Consensus 942 ~L~~L~ls~n~l~~~-----~~~--~~~~~L~~L~L~~n~~~~~l~----~~l~~l~~L~~L~L~~~~~~~-------~~ 1003 (1151)
+|+.|++++|.++.. +.. ..+++|+.|+|++|.+....+ ..+..+++|++|++++|.+.. .+
T Consensus 197 ~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 197 SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred CCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 555555555555441 111 012356666666666544322 334566777777777776322 22
Q ss_pred CCCCCCCCCccEEEecCCCcccc
Q 044085 1004 PEEVGFPPNITELHIEGPNICKL 1026 (1151)
Q Consensus 1004 ~~~~~~l~~L~~L~Ls~n~l~~~ 1026 (1151)
+..+..+++|+.|++++|.+...
T Consensus 277 ~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHhccCCceEEEecCCCcCCCc
Confidence 34456667777777777776543
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.42 E-value=3.5e-15 Score=170.85 Aligned_cols=259 Identities=14% Similarity=0.081 Sum_probs=164.4
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEcccccccc-----cchhhhcCCCCcEEecccccccc----cccccc----
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEV-----LPESVSTLYNLQTLILERCYRLK----KLFPDI---- 622 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~~---- 622 (1151)
+.|++..+....+..++..+..+++|++|+|++|.|+. ++..+..+++|++|+|++| .+. .+|..+
T Consensus 9 ~~L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 9 KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCCEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHH
Confidence 34555555666677888889999999999999999884 4455778999999999997 222 345444
Q ss_pred ---ccCCccCeeecCCCCccc----cCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHH
Q 044085 623 ---GNLTNLRHLKNSHSNLFE----EMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDA 695 (1151)
Q Consensus 623 ---~~L~~L~~L~l~~~~~~~----~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~ 695 (1151)
..+++|++|++++|.+.. .+|..+.++++|++|++..+..... . ...
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~-------------------------~~~ 141 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-A-------------------------GAK 141 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-H-------------------------HHH
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH-H-------------------------HHH
Confidence 789999999999999655 3677788899999887665532110 0 001
Q ss_pred HHHhcCCC---------CCcCceEEEecCCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCC------CCCcccC
Q 044085 696 KEAQLNGK---------EKLEALSLKWGDKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGA------KLPTWLG 760 (1151)
Q Consensus 696 ~~~~l~~~---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~------~~p~~~~ 760 (1151)
....+..+ ++|+.|++++|.+.. ... ......+..+++|+.|++++|... -+|.++.
T Consensus 142 l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~----~~~----~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~ 213 (386)
T 2ca6_A 142 IARALQELAVNKKAKNAPPLRSIICGRNRLEN----GSM----KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG----GGH----HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG
T ss_pred HHHHHHHHhhhhhcccCCCCcEEECCCCCCCc----HHH----HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh
Confidence 11112222 788899988887531 011 112234445668888888888765 2232443
Q ss_pred CCCCCCeeEEEEecCCCC----CCCC-CCCCCCCcceeeccCccCceE----eCccccCCCCCCCCCCcceeeccccchh
Q 044085 761 QSSFKNLVVLRFRNCNQC----TSLP-SVGHLPSLKNLVIKGMAKVKS----VGLEFCGKYCSEPFPSLETLCFEDMQEL 831 (1151)
Q Consensus 761 ~~~~~~L~~L~L~~~~~~----~~l~-~l~~l~~L~~L~L~~~~~l~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~l 831 (1151)
.+++|+.|+|++|.+. ..++ .+..+++|+.|+|++|..... ++..+. ...+++|++|+++++.
T Consensus 214 --~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~----~~~~~~L~~L~L~~n~-- 285 (386)
T 2ca6_A 214 --YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS----KLENIGLQTLRLQYNE-- 285 (386)
T ss_dssp --GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH----TCSSCCCCEEECCSSC--
T ss_pred --cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHh----hccCCCeEEEECcCCc--
Confidence 3778888888888874 3344 567788888888888863222 111110 0125677777776432
Q ss_pred hhhhcccCCCC----Cccccc-ccCCcccEEEeccCcCcc
Q 044085 832 EEWISHAGTAG----GDQEAA-KGFHSLRELSIINCSKLK 866 (1151)
Q Consensus 832 ~~~~~~~~~~~----~~~~~~-~~l~~L~~L~l~~c~~L~ 866 (1151)
+.. ..+..+ ..+++|+.|++++ |.++
T Consensus 286 --------i~~~g~~~l~~~l~~~l~~L~~L~l~~-N~l~ 316 (386)
T 2ca6_A 286 --------IELDAVRTLKTVIDEKMPDLLFLELNG-NRFS 316 (386)
T ss_dssp --------CBHHHHHHHHHHHHHHCTTCCEEECTT-SBSC
T ss_pred --------CCHHHHHHHHHHHHhcCCCceEEEccC-CcCC
Confidence 222 123333 3467777777777 4555
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=2.4e-12 Score=133.62 Aligned_cols=137 Identities=18% Similarity=0.232 Sum_probs=116.3
Q ss_pred CCCCccccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCC
Q 044085 930 QESLPDGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEV 1007 (1151)
Q Consensus 930 ~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 1007 (1151)
+..+|..+. ++|+.|++++|.++.++...+. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+....+..|
T Consensus 23 l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f 100 (220)
T 2v9t_B 23 LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100 (220)
T ss_dssp CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTT
T ss_pred cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHc
Confidence 455665543 7899999999999998876554 699999999999998888999999999999999999986666667
Q ss_pred CCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCe
Q 044085 1008 GFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLER 1085 (1151)
Q Consensus 1008 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~ 1085 (1151)
..+++|+.|+|++|.++...+. .|.++++|+.|++++ +.++.++ .+..+++|++
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYD-----------------------NKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS-----------------------SCCSCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCC-----------------------CcCCEECHHHHhCCCCCCE
Confidence 8999999999999999988765 588999999999998 4455555 4778899999
Q ss_pred eeEeCCC
Q 044085 1086 LTLCECP 1092 (1151)
Q Consensus 1086 L~l~~c~ 1092 (1151)
|++++|+
T Consensus 157 L~L~~N~ 163 (220)
T 2v9t_B 157 MHLAQNP 163 (220)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9999986
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=3e-12 Score=132.96 Aligned_cols=146 Identities=14% Similarity=0.218 Sum_probs=100.6
Q ss_pred cEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCc-cccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC
Q 044085 944 TTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALP-NGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN 1022 (1151)
Q Consensus 944 ~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 1022 (1151)
+.+++++|.++.+|. .++..++.|++++|.+.+..+ ..|..+++|++|++++|.+.+..+..|..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 478888888887765 345678888888888777544 347788888888888888877666678888888888888888
Q ss_pred ccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCcCCCC
Q 044085 1023 ICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLISLPKN 1100 (1151)
Q Consensus 1023 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~ 1100 (1151)
++..++. .|.++++|+.|++++| .++.++ .+..+++|++|+|++| .+..++..
T Consensus 93 l~~~~~~-~~~~l~~L~~L~Ls~N-----------------------~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 147 (220)
T 2v70_A 93 LENVQHK-MFKGLESLKTLMLRSN-----------------------RITCVGNDSFIGLSSVRLLSLYDN-QITTVAPG 147 (220)
T ss_dssp CCCCCGG-GGTTCSSCCEEECTTS-----------------------CCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTT
T ss_pred cCccCHh-HhcCCcCCCEEECCCC-----------------------cCCeECHhHcCCCccCCEEECCCC-cCCEECHH
Confidence 8777654 3777888888888873 333332 4455666666666666 45554332
Q ss_pred --CCCCCcceEeeccCc
Q 044085 1101 --GLPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1101 --~~~~sL~~L~i~~c~ 1115 (1151)
...++|+.|+++++|
T Consensus 148 ~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTTTCTTCCEEECCSCC
T ss_pred HhcCCCCCCEEEecCcC
Confidence 224566666666654
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.38 E-value=5.7e-13 Score=159.29 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=75.7
Q ss_pred CCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeee
Q 044085 553 PRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLK 632 (1151)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~ 632 (1151)
..++.|+.|++++|.+..+| .+..+++|++|+|++|.|+.+|. +..+++|++|+|++| .+..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 45677888888888888776 47888888888888888887766 788888888888888 666665 678888888888
Q ss_pred cCCCCccccCcccccCccCCCccCeeEe
Q 044085 633 NSHSNLFEEMPLRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 633 l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 660 (1151)
+++|.+. .+ ..+..|++|+.|++..+
T Consensus 116 Ls~N~l~-~l-~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 116 LEHNGIS-DI-NGLVHLPQLESLYLGNN 141 (605)
T ss_dssp CTTSCCC-CC-GGGGGCTTCSEEECCSS
T ss_pred ecCCCCC-CC-ccccCCCccCEEECCCC
Confidence 8888743 33 34666666666655433
No 115
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=1.8e-11 Score=139.89 Aligned_cols=294 Identities=13% Similarity=0.013 Sum_probs=180.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc----cC-CCceEEEEeCCCC-CHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE----HF-PDFRAWAYVSEDF-DAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f-~~~~~wv~vs~~~-~~~ 215 (1151)
..++||+++++++.+++..... +...+.+.|+|++|+||||+|+.+++...-.. .+ ....+|+.++... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988865321 12345899999999999999999998532110 11 1456788877766 888
Q ss_pred HHHHHHHHHhc-C--CCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhh-HHh-hhccccCCCCCcEEEEecCcccc
Q 044085 216 GITKVILQAAV-G--SVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDD-WTN-LCKPFKAGLPGSKIIVTTRNEDV 290 (1151)
Q Consensus 216 ~~~~~i~~~~~-~--~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~-~~~-l~~~l~~~~~gs~iivTtr~~~v 290 (1151)
.++..++.++. . .............+...+..++.+|||||++.-.... .+. +...+... .+..||+||+....
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECCCch
Confidence 88899888884 1 1122334566677778887766699999995421111 112 21112222 57789999987532
Q ss_pred ----cccc-cCCCceeecCCCChhhhHHHHHHhhcC-CCCCCCCchHHHHHHHHHHHcC---CChh-HHHHHHHHh--c-
Q 044085 291 ----SSMV-TTPSAAYSLENLLRDDCLSIFVRHSLG-RTDFSAHQYLSEIGEKIVDKCN---GSPL-AAKTLGGLL--R- 357 (1151)
Q Consensus 291 ----~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~~~~L--~- 357 (1151)
.... ......+.+++++.++..++|...+.. .......+ +..+.|++.++ |.|. |+..+.... +
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1111 111128999999999999999987531 11112223 55677788887 8887 444433322 2
Q ss_pred --CCCCHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCChhHHHHHhhhccCCCCcccChHHHHHHHHHcCCcccCCCC
Q 044085 358 --GKYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYPFDERQIVLLWMAEGLLQHKTDG 435 (1151)
Q Consensus 358 --~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~ 435 (1151)
..-+.+.+..++... ....+.-++..|+++.+..+..++....+..+. ......--..| +.
T Consensus 254 ~~~~i~~~~v~~~~~~~----------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~----- 316 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY----------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK----- 316 (384)
T ss_dssp SSSCCCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----
T ss_pred CCCccCHHHHHHHHHHH----------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----
Confidence 124567777776543 123566778899988887777666611101111 11111111222 11
Q ss_pred ccHHHHHHHHHHHHHhCcccccc
Q 044085 436 IEMEELGRKSFQVLHSRSFFQRS 458 (1151)
Q Consensus 436 ~~~~~~~~~~~~~L~~~~l~~~~ 458 (1151)
.........+++.|...++++..
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11234567889999999999874
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.37 E-value=2.6e-11 Score=138.86 Aligned_cols=295 Identities=13% Similarity=0.045 Sum_probs=179.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc---cCCCceEEEEeCCCCCHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE---HFPDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~f~~~~~wv~vs~~~~~~~~ 217 (1151)
++.++||+.+++++.+++..... ....+.+.|+|++|+||||+|+.+++...... ......+|+++....+...+
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 95 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRV 95 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHH
Confidence 36799999999999999865321 12345789999999999999999998542110 11134678888888888899
Q ss_pred HHHHHHHhcCC--CCCcchHHHHHHHHHHhc--CCceEEEEeCCCCCChh--hHHhhhccccCC-----CCCcEEEEecC
Q 044085 218 TKVILQAAVGS--VDVNDLNLLQLQLENQLK--NKKFLLVLDDMWTENYD--DWTNLCKPFKAG-----LPGSKIIVTTR 286 (1151)
Q Consensus 218 ~~~i~~~~~~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~--~~~~l~~~l~~~-----~~gs~iivTtr 286 (1151)
...++.+++.. ............+...+. +++.+||+||++.-... ..+.+...+... ..+..+|.||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 99999988732 122335555666666663 56889999999542111 222232222211 34567888887
Q ss_pred cccccccc----c-CC-CceeecCCCChhhhHHHHHHhhc---CCCCCCCCchHHHHHHHHHHHcC---CChhHH-HHHH
Q 044085 287 NEDVSSMV----T-TP-SAAYSLENLLRDDCLSIFVRHSL---GRTDFSAHQYLSEIGEKIVDKCN---GSPLAA-KTLG 353 (1151)
Q Consensus 287 ~~~v~~~~----~-~~-~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~~~i~~~c~---g~Plai-~~~~ 353 (1151)
.......+ . .. ...+.+++++.++..+++...+. ... ...+ +..+.+++.++ |.|..+ ..+.
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~ 250 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG--VLDP---DVVPLCAALAAREHGDARRALDLLR 250 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT--TBCS---SHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC--CCCH---HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 65332111 1 11 13789999999999999988743 221 1222 45667777777 999433 3332
Q ss_pred HHh--c---C--CCCHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCChhHHHHHhhhc-cCCCCcccChHHHHHHH--
Q 044085 354 GLL--R---G--KYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCS-LLPKGYPFDERQIVLLW-- 423 (1151)
Q Consensus 354 ~~L--~---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~li~~w-- 423 (1151)
.+. + + .-+.+.+..++... ....+.-++..|+.+.+..+..++ ++.....+....+.+..
T Consensus 251 ~a~~~a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 251 VAGEIAERRREERVRREHVYSARAEI----------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHTTCSCBCHHHHHHHHHHH----------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 222 1 1 13456666665432 123456678899998887666555 44322234444333322
Q ss_pred --HHcCCcccCCCCccHHHHHHHHHHHHHhCcccccc
Q 044085 424 --MAEGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRS 458 (1151)
Q Consensus 424 --~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 458 (1151)
-..| + .......+..++++|...|+++..
T Consensus 321 ~~~~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 321 LTSTLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 1122 1 112235677889999999999874
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.36 E-value=1.9e-14 Score=162.89 Aligned_cols=137 Identities=14% Similarity=0.156 Sum_probs=71.8
Q ss_pred CCccEEEEeCCccccccCC-------CCCCCccEEEEcCCCCcccCcc----ccCCC-CccceeeecCCCCCcc----CC
Q 044085 941 SHITTISMYGSRLVSFAEG-------GLPSNLCSLTLFGCRYLTALPN----GIYNL-SSLQHLEIRACPRIAS----IP 1004 (1151)
Q Consensus 941 ~~L~~L~ls~n~l~~~~~~-------~~~~~L~~L~L~~n~~~~~l~~----~l~~l-~~L~~L~L~~~~~~~~----~~ 1004 (1151)
++|++|++++|.+++.... ..+++|++|+|++|.+.+..+. .+..+ ++|++|+|++|.+... ++
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~ 217 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA 217 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence 4677777777766532211 1223677777777766554332 23334 4677777777765542 22
Q ss_pred CCCCC-CCCccEEEecCCCcccccc---ccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-CCCC
Q 044085 1005 EEVGF-PPNITELHIEGPNICKLFF---DLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-FVRN 1079 (1151)
Q Consensus 1005 ~~~~~-l~~L~~L~Ls~n~l~~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~l~~ 1079 (1151)
..+.. .++|++|+|++|.+++... ...+..+++|+.|++++|. +..+.-. .+..++ .+.+
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~------------l~~i~~~---~~~~l~~~~~~ 282 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI------------VKNMSKE---QCKALGAAFPN 282 (362)
T ss_dssp HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH------------HTTCCHH---HHHHHHTTSTT
T ss_pred HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC------------ccccCHH---HHHHHHHHhcc
Confidence 22222 3467777777776665432 1124555666666666521 0000000 011111 4567
Q ss_pred CCCCCeeeEeCCC
Q 044085 1080 LTSLERLTLCECP 1092 (1151)
Q Consensus 1080 l~~L~~L~l~~c~ 1092 (1151)
+++|+.|++++|+
T Consensus 283 l~~L~~LdL~~N~ 295 (362)
T 3goz_A 283 IQKIILVDKNGKE 295 (362)
T ss_dssp CCEEEEECTTSCB
T ss_pred CCceEEEecCCCc
Confidence 7888888888884
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.36 E-value=1.7e-12 Score=155.16 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=108.0
Q ss_pred ccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccE
Q 044085 936 GLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITE 1015 (1151)
Q Consensus 936 ~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 1015 (1151)
.+..+++|+.|+|++|.++.++...-.++|+.|+|++|.+.. +| .+..+++|++|+|++|.+.. ++ .+..+++|+.
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 135 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-IN-GLVHLPQLES 135 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-CG-GGGGCTTCSE
T ss_pred HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-Cc-cccCCCccCE
Confidence 466788888888888888777664334688888888887765 33 57788888888888887765 33 3677888888
Q ss_pred EEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCC
Q 044085 1016 LHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLI 1095 (1151)
Q Consensus 1016 L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~ 1095 (1151)
|+|++|.++++. .+..+++|+.|+|++|.......-.-.++|+.|++++| .+..++.+..+++|+.|+|++| .+.
T Consensus 136 L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N-~l~ 210 (605)
T 1m9s_A 136 LYLGNNKITDIT---VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQ-ECL 210 (605)
T ss_dssp EECCSSCCCCCG---GGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSE-EEE
T ss_pred EECCCCccCCch---hhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCC-cCc
Confidence 888888877763 46778888888888754332111122347888888875 5677777777888888888877 344
Q ss_pred cCC
Q 044085 1096 SLP 1098 (1151)
Q Consensus 1096 ~l~ 1098 (1151)
..|
T Consensus 211 ~~p 213 (605)
T 1m9s_A 211 NKP 213 (605)
T ss_dssp CCC
T ss_pred CCc
Confidence 433
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=2.3e-12 Score=137.93 Aligned_cols=153 Identities=14% Similarity=0.152 Sum_probs=119.0
Q ss_pred ccCCCCCccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccE
Q 044085 936 GLHKLSHITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITE 1015 (1151)
Q Consensus 936 ~l~~l~~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 1015 (1151)
.+..+++|+.|++++|.+++++.....++|+.|++++|.+.+..+ +..+++|++|++++|.+.+ +|.. .. ++|+.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCE
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-CcccE
Confidence 456788999999999999988754445799999999999877443 8899999999999998875 4443 33 89999
Q ss_pred EEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCCCCCCCCCCCeeeEeCCCCCC
Q 044085 1016 LHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLSFVRNLTSLERLTLCECPNLI 1095 (1151)
Q Consensus 1016 L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~l~~l~~L~~L~l~~c~~l~ 1095 (1151)
|++++|.+++.+ .+.++++|+.|++++|.......-.-.++|+.|+++++ .++.++.+..+++|+.|++++|+ +.
T Consensus 111 L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~-~~ 185 (263)
T 1xeu_A 111 LFLDNNELRDTD---SLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK-CV 185 (263)
T ss_dssp EECCSSCCSBSG---GGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE-EE
T ss_pred EEccCCccCCCh---hhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc-cc
Confidence 999999998865 47889999999999965432221112458899999884 67777888889999999999884 44
Q ss_pred cCC
Q 044085 1096 SLP 1098 (1151)
Q Consensus 1096 ~l~ 1098 (1151)
..|
T Consensus 186 ~~~ 188 (263)
T 1xeu_A 186 NEP 188 (263)
T ss_dssp CCC
T ss_pred CCc
Confidence 444
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=8.2e-12 Score=130.61 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=113.9
Q ss_pred CCCCCccccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCC
Q 044085 929 DQESLPDGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEE 1006 (1151)
Q Consensus 929 ~~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 1006 (1151)
.+..+|..+. ++|+.|++++|.++.++...+. ++|+.|+|++|.+....+..|..+++|++|+|++|.+....+..
T Consensus 30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 107 (229)
T 3e6j_A 30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV 107 (229)
T ss_dssp CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhH
Confidence 3566666553 8999999999999988665543 69999999999987655566899999999999999998777777
Q ss_pred CCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCC
Q 044085 1007 VGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLE 1084 (1151)
Q Consensus 1007 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~ 1084 (1151)
|..+++|+.|+|++|.++.++. .+.++++|+.|++++ +.++.++ .+..+++|+
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPR--GIERLTHLTHLALDQ-----------------------NQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCT--TGGGCTTCSEEECCS-----------------------SCCCCCCTTTTTTCTTCC
T ss_pred hCcchhhCeEeccCCcccccCc--ccccCCCCCEEECCC-----------------------CcCCccCHHHHhCCCCCC
Confidence 8899999999999999997764 467889999999988 4555555 577889999
Q ss_pred eeeEeCCC
Q 044085 1085 RLTLCECP 1092 (1151)
Q Consensus 1085 ~L~l~~c~ 1092 (1151)
.|++++||
T Consensus 163 ~L~l~~N~ 170 (229)
T 3e6j_A 163 HAYLFGNP 170 (229)
T ss_dssp EEECTTSC
T ss_pred EEEeeCCC
Confidence 99999996
No 121
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=6.6e-12 Score=129.47 Aligned_cols=105 Identities=19% Similarity=0.169 Sum_probs=73.9
Q ss_pred CCCccEEEEeCCccccccCCCC--CCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEE
Q 044085 940 LSHITTISMYGSRLVSFAEGGL--PSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELH 1017 (1151)
Q Consensus 940 l~~L~~L~ls~n~l~~~~~~~~--~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 1017 (1151)
.++|+.|++++|.++.++...+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 3577788888877777666543 25778888887777665455567777888888887777755555567777788888
Q ss_pred ecCCCccccccccCCCCCCCcceEEecc
Q 044085 1018 IEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1018 Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
+++|.+++.+.. .+.++++|+.|++++
T Consensus 107 L~~N~l~~~~~~-~~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 107 LNTNQLQSLPDG-VFDKLTQLKDLRLYQ 133 (208)
T ss_dssp CCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred cCCCcCcccCHh-HhccCCcCCEEECCC
Confidence 887777766543 366777777777776
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.33 E-value=1.7e-11 Score=126.45 Aligned_cols=144 Identities=21% Similarity=0.207 Sum_probs=106.7
Q ss_pred cEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCc
Q 044085 944 TTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNI 1023 (1151)
Q Consensus 944 ~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 1023 (1151)
+.++.+++.++.+|.. ++++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 5677888888888754 456999999999999876666789999999999999999876666678999999999999999
Q ss_pred cccccccCCCCCCCcceEEeccCCCCcccccC----CCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCC
Q 044085 1024 CKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQK----LPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECP 1092 (1151)
Q Consensus 1024 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 1092 (1151)
+..+.. .+.++++|+.|++++|... .++. -..+|+.|+++++ .++.++ .+..+++|++|++++|+
T Consensus 89 ~~~~~~-~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 89 QSLPNG-VFDKLTQLKELALNTNQLQ--SLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp CCCCTT-TTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHh-HhcCccCCCEEEcCCCcCc--ccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCC
Confidence 977654 4789999999999984322 1111 1235666666653 444444 35556666666666653
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.33 E-value=4e-12 Score=143.44 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=101.1
Q ss_pred CCCCccccCCCCCccEEEEeCCccccccCCCCC---CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCC
Q 044085 930 QESLPDGLHKLSHITTISMYGSRLVSFAEGGLP---SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEE 1006 (1151)
Q Consensus 930 ~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~---~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 1006 (1151)
+..+|..+. +.++.|+|++|.|+.++...+. ++|+.|+|++|.+.+..+..|..+++|++|+|++|.+....+..
T Consensus 30 l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 30 LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 344444332 3466777777777666655432 46777777777766655556667777777777777666555555
Q ss_pred CCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CC---CCCC
Q 044085 1007 VGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FV---RNLT 1081 (1151)
Q Consensus 1007 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l---~~l~ 1081 (1151)
|..+++|+.|+|++|.|+.+.+. .|.++++|+.|+|++ +.++.++ .+ ..++
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~-----------------------N~l~~l~~~~~~~~~~l~ 163 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQ-----------------------NQISRFPVELIKDGNKLP 163 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS-----------------------SCCCSCCGGGTC----CT
T ss_pred hCCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCC-----------------------CcCCeeCHHHhcCcccCC
Confidence 66677777777777776655443 366666777666666 3555555 23 5688
Q ss_pred CCCeeeEeCCCCCCcCCCCC--CCCC--cceEeeccCc
Q 044085 1082 SLERLTLCECPNLISLPKNG--LPPS--LVYVDIYSCP 1115 (1151)
Q Consensus 1082 ~L~~L~l~~c~~l~~l~~~~--~~~s--L~~L~i~~c~ 1115 (1151)
+|+.|+|++| .+..+|... ..++ |+.|+++++|
T Consensus 164 ~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 164 KLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp TCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred cCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 9999999998 687777431 1233 5788888865
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=7.7e-13 Score=141.59 Aligned_cols=166 Identities=18% Similarity=0.193 Sum_probs=98.5
Q ss_pred CCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecC
Q 044085 555 LRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNS 634 (1151)
Q Consensus 555 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~ 634 (1151)
+..+..++++++.++.++ .+..+++|++|++++|.|+.+| .+..+++|++|++++| .+..+|. +..+++|++|+++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECC
Confidence 445556666666666665 4566666777777776666666 5666677777777666 5555555 6666677777776
Q ss_pred CCCccccCcccccCccCCCccCeeEeccCCCCCcccccccccccCcEEEeCccCCCCHhHHHHHhcCCCCCcCceEEEec
Q 044085 635 HSNLFEEMPLRIGKLTSLRTLAKFAVGKSNCSGLRELRSLTLLQDKLTISGLENVNDAEDAKEAQLNGKEKLEALSLKWG 714 (1151)
Q Consensus 635 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~l~~L~~L~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 714 (1151)
+|.+ ..+|.. .. ++|+.|++.. |
T Consensus 94 ~N~l-~~l~~~-~~-~~L~~L~L~~------------------------------------------------------N 116 (263)
T 1xeu_A 94 RNRL-KNLNGI-PS-ACLSRLFLDN------------------------------------------------------N 116 (263)
T ss_dssp SSCC-SCCTTC-CC-SSCCEEECCS------------------------------------------------------S
T ss_pred CCcc-CCcCcc-cc-CcccEEEccC------------------------------------------------------C
Confidence 6663 223321 11 3333332222 2
Q ss_pred CCCCCCCCchhhHHHHhHhhccCCCCCcceEEEeecCCCCCCcccCCCCCCCeeEEEEecCCCCCCCCCCCCCCCcceee
Q 044085 715 DKTTNSDSREVAEIQTRVLEMLKPHYGLKELKVQGYGGAKLPTWLGQSSFKNLVVLRFRNCNQCTSLPSVGHLPSLKNLV 794 (1151)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 794 (1151)
.... +..+..+++|+.|++++|....++ .+. .+++|+.|++++|.+... +.+..+++|+.|+
T Consensus 117 ~l~~--------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 117 ELRD--------------TDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp CCSB--------------SGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred ccCC--------------ChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence 1100 011233445555666666555554 233 377888888888887554 6778888888888
Q ss_pred ccCcc
Q 044085 795 IKGMA 799 (1151)
Q Consensus 795 L~~~~ 799 (1151)
+++|.
T Consensus 179 l~~N~ 183 (263)
T 1xeu_A 179 LTGQK 183 (263)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 88875
No 125
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=1e-11 Score=128.91 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=113.2
Q ss_pred CCCCccccCCCCCccEEEEeCCccccccC-CCC--CCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCC
Q 044085 930 QESLPDGLHKLSHITTISMYGSRLVSFAE-GGL--PSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEE 1006 (1151)
Q Consensus 930 ~~~l~~~l~~l~~L~~L~ls~n~l~~~~~-~~~--~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 1006 (1151)
+..+|..+. +.++.|++++|.++.++. ..+ .++|+.|+|++|.+.+..+..|..+++|++|+|++|.+.+..+..
T Consensus 23 l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 100 (220)
T 2v70_A 23 LNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100 (220)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGG
T ss_pred cccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhH
Confidence 455665543 467899999999998854 323 369999999999998877778999999999999999998877777
Q ss_pred CCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCC
Q 044085 1007 VGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLE 1084 (1151)
Q Consensus 1007 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~ 1084 (1151)
|..+++|++|+|++|.++++.+. .+.++++|+.|++++ +.++.++ .+..+++|+
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYD-----------------------NQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTT-----------------------SCCCCBCTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCC-----------------------CcCCEECHHHhcCCCCCC
Confidence 89999999999999999987654 588899999999998 3555552 677889999
Q ss_pred eeeEeCCC
Q 044085 1085 RLTLCECP 1092 (1151)
Q Consensus 1085 ~L~l~~c~ 1092 (1151)
+|++++|+
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 99999985
No 126
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=1e-10 Score=134.03 Aligned_cols=296 Identities=14% Similarity=0.065 Sum_probs=182.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
+.++||+.+++++.+++.....+.....+.+.|+|++|+||||+|+.+++... .......+|+.++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCCCHHHHHHHH
Confidence 67999999999999998763110112234889999999999999999998432 2211246777777777888899999
Q ss_pred HHHhcCCC--CCcchHHHHHHHHHHhc--CCceEEEEeCCCCCChhhHHhhhccccCCC----CCcEEEEecCccccccc
Q 044085 222 LQAAVGSV--DVNDLNLLQLQLENQLK--NKKFLLVLDDMWTENYDDWTNLCKPFKAGL----PGSKIIVTTRNEDVSSM 293 (1151)
Q Consensus 222 ~~~~~~~~--~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~----~gs~iivTtr~~~v~~~ 293 (1151)
+..++... ...........+...+. +++.+||+||++..+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 88886321 22345555666666654 568899999997655555666655443211 36678888776543222
Q ss_pred cc------CCCceeecCCCChhhhHHHHHHhhcCCC-CCCCCchHHHHHHHHHHHc---------CCChhHHHHHHHHhc
Q 044085 294 VT------TPSAAYSLENLLRDDCLSIFVRHSLGRT-DFSAHQYLSEIGEKIVDKC---------NGSPLAAKTLGGLLR 357 (1151)
Q Consensus 294 ~~------~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c---------~g~Plai~~~~~~L~ 357 (1151)
.. .....+.+.+++.++..+++...+.... ..... .+..+.|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 21 0112699999999999999988653200 11112 36778889999 788765554433221
Q ss_pred ------CC--CCHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCChhHHHHHhhhccCC---CCcccChHHHHHHHHH-
Q 044085 358 ------GK--YDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLP---KGYPFDERQIVLLWMA- 425 (1151)
Q Consensus 358 ------~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~li~~w~a- 425 (1151)
+. .+.+....+...... ..+.-.+..||.+.+.++..++.+. .+-.+....+...+-.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~----------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLF----------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSC----------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhh----------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 223333333332210 0122335668888888777777654 2224555556554433
Q ss_pred ---cCCcccCCCCccHHHHHHHHHHHHHhCcccccc
Q 044085 426 ---EGLLQHKTDGIEMEELGRKSFQVLHSRSFFQRS 458 (1151)
Q Consensus 426 ---~g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 458 (1151)
.|... -.......++++|...++|...
T Consensus 322 ~~~~~~~~------~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 322 CEEYGERP------RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHTTCCC------CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHcCCCC------CCHHHHHHHHHHHHhCCCeEEe
Confidence 22111 1124467889999999999874
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=1.5e-11 Score=138.76 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=124.4
Q ss_pred cEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccC-CCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC
Q 044085 944 TTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIY-NLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN 1022 (1151)
Q Consensus 944 ~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 1022 (1151)
+.++++++.++.+|. .++..++.|+|++|.+.+..+..+. .+++|++|+|++|.+....+..|..+++|+.|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 589999999999886 4567899999999999887777777 89999999999999988777889999999999999999
Q ss_pred ccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCcCCCC
Q 044085 1023 ICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLISLPKN 1100 (1151)
Q Consensus 1023 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~l~~~ 1100 (1151)
++.++.. .|.++++|+.|+|++ +.++.++ .+..+++|+.|+|++| .+..+|..
T Consensus 100 l~~~~~~-~~~~l~~L~~L~L~~-----------------------N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~ 154 (361)
T 2xot_A 100 LHTLDEF-LFSDLQALEVLLLYN-----------------------NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVE 154 (361)
T ss_dssp CCEECTT-TTTTCTTCCEEECCS-----------------------SCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGG
T ss_pred CCcCCHH-HhCCCcCCCEEECCC-----------------------CcccEECHHHhCCcccCCEEECCCC-cCCeeCHH
Confidence 9887654 488999999999998 3444443 6788999999999999 78888875
Q ss_pred C-----CCCCcceEeeccCc
Q 044085 1101 G-----LPPSLVYVDIYSCP 1115 (1151)
Q Consensus 1101 ~-----~~~sL~~L~i~~c~ 1115 (1151)
. .+++|+.|++++|.
T Consensus 155 ~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 155 LIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp GTC----CTTCCEEECCSSC
T ss_pred HhcCcccCCcCCEEECCCCC
Confidence 3 36899999999973
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=6.4e-11 Score=135.63 Aligned_cols=295 Identities=13% Similarity=0.064 Sum_probs=174.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccC--CCceEEEEeCCCCCHHHHH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF--PDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f--~~~~~wv~vs~~~~~~~~~ 218 (1151)
+..++||+.+++.+.+++..... +.....+.|+|++|+||||||+.+++. ....+ ....+|+.+....+...+.
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 46799999999999999875311 123458899999999999999999984 33332 1346777776666777778
Q ss_pred HHHHHHhcCCC--CCcchHHHHHHHHHHhc--CCceEEEEeCCCCCC----hhhHHhhhccccC-CCCCcEEEEecCccc
Q 044085 219 KVILQAAVGSV--DVNDLNLLQLQLENQLK--NKKFLLVLDDMWTEN----YDDWTNLCKPFKA-GLPGSKIIVTTRNED 289 (1151)
Q Consensus 219 ~~i~~~~~~~~--~~~~~~~~~~~l~~~l~--~k~~LlVlDdvw~~~----~~~~~~l~~~l~~-~~~gs~iivTtr~~~ 289 (1151)
..++.+++... ...+.......+.+.+. +++.+||+|+++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 88777765221 22234555566666664 458999999995311 2233334333321 223556777877654
Q ss_pred cccccc-----CC-CceeecCCCChhhhHHHHHHhhcC-CCCCCCCchHHHHHHHHHHHcC---CChhHHHHHHHHh---
Q 044085 290 VSSMVT-----TP-SAAYSLENLLRDDCLSIFVRHSLG-RTDFSAHQYLSEIGEKIVDKCN---GSPLAAKTLGGLL--- 356 (1151)
Q Consensus 290 v~~~~~-----~~-~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---g~Plai~~~~~~L--- 356 (1151)
....+. .. ...+.+++++.++.++++...+.. ....... .++.+.+++.++ |.|..+..+....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 322221 11 137999999999999999876421 1111122 356677777777 9998544332222
Q ss_pred c---C--CCCHHHHHHHHhhhcccCCCChhhHHHHHHHhhcCCChhHHHHHhhhccCCC-C-cccChHHHHHHH--HHc-
Q 044085 357 R---G--KYDPKDWEDVLNSKIWDLDEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPK-G-YPFDERQIVLLW--MAE- 426 (1151)
Q Consensus 357 ~---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~li~~w--~a~- 426 (1151)
+ + .-+.+.+..++... ....+.-.+..+|.+.+..+..++..-+ + ..+....+.+.. +++
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~ 321 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKK 321 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHh
Confidence 1 1 13455555555432 1235666778899888877766663211 1 122333232211 111
Q ss_pred -CCcccCCCCccHHHHHHHHHHHHHhCcccccc
Q 044085 427 -GLLQHKTDGIEMEELGRKSFQVLHSRSFFQRS 458 (1151)
Q Consensus 427 -g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~ 458 (1151)
| +. .........+++.|...++++..
T Consensus 322 ~g-~~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 322 LG-VE-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HT-CC-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cC-CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 11 11124467789999999999763
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.9e-11 Score=121.42 Aligned_cols=123 Identities=16% Similarity=0.243 Sum_probs=103.2
Q ss_pred cEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCc
Q 044085 944 TTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNI 1023 (1151)
Q Consensus 944 ~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 1023 (1151)
+.+++++|.++.+|.. ++++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..|..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 5788899999988864 5679999999999986 4778899999999999999999887778889999999999999999
Q ss_pred cccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCC
Q 044085 1024 CKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECP 1092 (1151)
Q Consensus 1024 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 1092 (1151)
+.+++. .|.++++|+.|++++ +.++.++ .+..+++|+.|++++|+
T Consensus 91 ~~i~~~-~f~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPR-TFDGLKSLRLLSLHG-----------------------NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTT-TTTTCTTCCEEECCS-----------------------SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHH-HhCCCCCCCEEECCC-----------------------CCCCeeChhhhhcCccccEEEeCCCC
Confidence 887765 488889999999888 4555555 46778889999988885
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=2.6e-11 Score=120.07 Aligned_cols=131 Identities=20% Similarity=0.211 Sum_probs=105.3
Q ss_pred CCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccc-cchhhhcCC
Q 044085 524 VEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEV-LPESVSTLY 602 (1151)
Q Consensus 524 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~-lp~~i~~L~ 602 (1151)
.++++.|.+.++.. ....++..+..+++|++|++++|.++.+ ..+..+++|++|+|++|.++. +|..+..++
T Consensus 23 ~~~L~~L~l~~n~l------~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNCKS------NDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSCBC------BTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCCCC------ChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 35667776665431 1012344577889999999999999888 788999999999999999997 788888899
Q ss_pred CCcEEeccccccccccc--cccccCCccCeeecCCCCccccCcc----cccCccCCCccCeeEeccC
Q 044085 603 NLQTLILERCYRLKKLF--PDIGNLTNLRHLKNSHSNLFEEMPL----RIGKLTSLRTLAKFAVGKS 663 (1151)
Q Consensus 603 ~L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~~ 663 (1151)
+|++|++++| .+..+| ..+..+++|++|++++|.+ ..+|. .+..+++|+.|++..+...
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999999 777776 6799999999999999985 45554 6889999999988877543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=1.9e-11 Score=121.07 Aligned_cols=134 Identities=15% Similarity=0.164 Sum_probs=87.5
Q ss_pred CCCccEEEEeCCccc--cccCC-CCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEE
Q 044085 940 LSHITTISMYGSRLV--SFAEG-GLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITEL 1016 (1151)
Q Consensus 940 l~~L~~L~ls~n~l~--~~~~~-~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 1016 (1151)
.++|+.|++++|.++ .++.. .-.++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467778888887776 55543 1225777777777776554 566777777777777777776566655567777777
Q ss_pred EecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC-----CCCCCCCCCeeeEeCC
Q 044085 1017 HIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS-----FVRNLTSLERLTLCEC 1091 (1151)
Q Consensus 1017 ~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-----~l~~l~~L~~L~l~~c 1091 (1151)
++++|.+++.+....+..+++|+.|++++| .++.++ .+..+++|++|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-----------------------~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-----------------------EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-----------------------GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-----------------------cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 777777776543224666777777777762 233332 2456777777777777
Q ss_pred CCCCcCCC
Q 044085 1092 PNLISLPK 1099 (1151)
Q Consensus 1092 ~~l~~l~~ 1099 (1151)
.+..+|.
T Consensus 158 -~~~~~~~ 164 (168)
T 2ell_A 158 -EDQEAPD 164 (168)
T ss_dssp -TSCBCCS
T ss_pred -Chhhccc
Confidence 4555543
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.22 E-value=5e-11 Score=120.73 Aligned_cols=124 Identities=21% Similarity=0.232 Sum_probs=96.9
Q ss_pred cEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCcc-ccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC
Q 044085 944 TTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPN-GIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN 1022 (1151)
Q Consensus 944 ~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 1022 (1151)
+.+++++|.++.+|.. ++.+|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..|..+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 6788888888888764 445899999999988765554 37888999999999998888778888889999999999999
Q ss_pred ccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCC
Q 044085 1023 ICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECP 1092 (1151)
Q Consensus 1023 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 1092 (1151)
+++.++. .+.++++|+.|++++ +.++.+. .+..+++|++|++++|+
T Consensus 90 l~~~~~~-~~~~l~~L~~L~L~~-----------------------N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 90 IKEISNK-MFLGLHQLKTLNLYD-----------------------NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCEECSS-SSTTCTTCCEEECCS-----------------------SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCccCHH-HhcCCCCCCEEECCC-----------------------CcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 8877654 477888888888888 2333332 46677788888888875
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.9e-11 Score=118.28 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=97.1
Q ss_pred CCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccc-cchhhhcCCC
Q 044085 525 EYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEV-LPESVSTLYN 603 (1151)
Q Consensus 525 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~-lp~~i~~L~~ 603 (1151)
++++.|.+.++.. .....+..+..+++|++|++++|.++.+ ..++++++|++|+|++|.++. +|..+..+++
T Consensus 17 ~~l~~L~l~~n~l------~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 17 SDVKELVLDNSRS------NEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp GGCSEEECTTCBC------BTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred ccCeEEEccCCcC------ChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 4566666655431 1012344678889999999999998888 778899999999999999997 7888888999
Q ss_pred CcEEeccccccccccc--cccccCCccCeeecCCCCccccCcc----cccCccCCCccCee
Q 044085 604 LQTLILERCYRLKKLF--PDIGNLTNLRHLKNSHSNLFEEMPL----RIGKLTSLRTLAKF 658 (1151)
Q Consensus 604 L~~L~L~~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~ 658 (1151)
|++|++++| .+..+| ..+..+++|++|++++|.+. ..|. .++.+++|+.|++.
T Consensus 90 L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 999999999 677655 77899999999999999854 4443 57888888888653
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.6e-10 Score=115.49 Aligned_cols=125 Identities=22% Similarity=0.218 Sum_probs=101.1
Q ss_pred ccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCC
Q 044085 943 ITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPN 1022 (1151)
Q Consensus 943 L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 1022 (1151)
.+.++++++.++.+|.. ++++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 46788889999888744 45799999999999887666667899999999999998887666667899999999999999
Q ss_pred ccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCC
Q 044085 1023 ICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCECP 1092 (1151)
Q Consensus 1023 l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~ 1092 (1151)
+++.+.. .+.++++|+.|++++ +.++.++ .+..+++|++|++++|+
T Consensus 88 l~~~~~~-~~~~l~~L~~L~l~~-----------------------N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNG-VFDKLTQLKELALDT-----------------------NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTT-TTTTCTTCCEEECCS-----------------------SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHH-HhhCCcccCEEECcC-----------------------CcceEeCHHHhcCCcccCEEEecCCC
Confidence 9877654 367888888888887 3455555 35778899999999885
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=3.2e-10 Score=120.65 Aligned_cols=197 Identities=14% Similarity=0.148 Sum_probs=121.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
..++||+..++.+..++.... ..+.+.|+|++|+||||+|+.+++.......+ .. ........ ...+
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~-~~------~~~~~~~~-~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TA------TPCGVCDN-CREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCS-CS------SCCSCSHH-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CC------CCCcccHH-HHHH
Confidence 468999999999999997653 23478999999999999999998844321111 00 00000000 0011
Q ss_pred HHHh----c--CCCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc-
Q 044085 222 LQAA----V--GSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED- 289 (1151)
Q Consensus 222 ~~~~----~--~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~- 289 (1151)
.... . ........+... .+.+.+ .+++.+||+||++..+...++.+...+.....+..+|+||+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTR-DLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHH-HHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred hccCCcceEEecCcccccHHHHH-HHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 0000 0 000001111111 122221 35689999999976666777777777766556788888887643
Q ss_pred ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 290 VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 290 v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+..........+.+++++.++.++++...+..... ... .+..+.|++.|+|.|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22222222237999999999999999887643221 112 2667889999999999988876554
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=5.7e-11 Score=118.54 Aligned_cols=130 Identities=19% Similarity=0.142 Sum_probs=102.7
Q ss_pred ccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhh-h
Q 044085 521 LHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESV-S 599 (1151)
Q Consensus 521 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i-~ 599 (1151)
+..+.+|+.|.+.++.. .. .+......++|++|++++|.++.+ ..+.++++|++|+|++|.|+.+|..+ .
T Consensus 15 ~~~~~~L~~L~l~~n~l-------~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI-------PV-IENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp EECTTSCEEEECTTSCC-------CS-CCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred cCCcCCceEEEeeCCCC-------ch-hHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhh
Confidence 34566777777766531 11 122223334899999999999988 67899999999999999999998664 8
Q ss_pred cCCCCcEEecccccccccccc--ccccCCccCeeecCCCCccccCccc----ccCccCCCccCeeEec
Q 044085 600 TLYNLQTLILERCYRLKKLFP--DIGNLTNLRHLKNSHSNLFEEMPLR----IGKLTSLRTLAKFAVG 661 (1151)
Q Consensus 600 ~L~~L~~L~L~~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~~~~ 661 (1151)
.+++|++|++++| .+..+|. .+..+++|++|++++|.+ ..+|.. ++.+++|+.|++..+.
T Consensus 86 ~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 86 ALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp HCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred cCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999 7788887 789999999999999994 566764 8889999999877664
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.11 E-value=3.7e-11 Score=119.94 Aligned_cols=107 Identities=14% Similarity=0.065 Sum_probs=64.0
Q ss_pred cCCCCCccEEEEeCCccccccCCCC-CCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccE
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGL-PSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITE 1015 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~-~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 1015 (1151)
+.++++|+.|++++|.++.++.... .++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4567778888888887776643221 23677777777776553 45666777777777777665433333356667777
Q ss_pred EEecCCCccccccccCCCCCCCcceEEecc
Q 044085 1016 LHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1016 L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
|++++|.++..+....+.++++|+.|++++
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCS
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecC
Confidence 777777665544311244445555555544
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=6.9e-11 Score=114.34 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=93.7
Q ss_pred CCCCcccEEEecCcccc--ccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccc-cccccccCCccC
Q 044085 553 PRLRRLRVLSLCGYWIL--QLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKK-LFPDIGNLTNLR 629 (1151)
Q Consensus 553 ~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~~~~L~~L~ 629 (1151)
...+.|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++| .+.. +|..+..+++|+
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 34588999999999998 8999899999999999999999988 77999999999999999 5555 887788899999
Q ss_pred eeecCCCCcccc-CcccccCccCCCccCeeEeccC
Q 044085 630 HLKNSHSNLFEE-MPLRIGKLTSLRTLAKFAVGKS 663 (1151)
Q Consensus 630 ~L~l~~~~~~~~-~p~~i~~L~~L~~L~~~~~~~~ 663 (1151)
+|++++|.+.+. .|..++.+++|++|++..+...
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 999999995432 3377899999999987766543
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=7.8e-11 Score=144.80 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=99.3
Q ss_pred hhhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCC
Q 044085 547 LVFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLT 626 (1151)
Q Consensus 547 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~ 626 (1151)
.++..|..++.|++|+|++|.+..+|..+.++++|++|+|++|.|+.+|..|++|++|++|+|++| .+..+|..|+.|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 456778899999999999999999998888999999999999999999999999999999999999 6779999999999
Q ss_pred ccCeeecCCCCccccCcccccCccCCCccCeeEecc
Q 044085 627 NLRHLKNSHSNLFEEMPLRIGKLTSLRTLAKFAVGK 662 (1151)
Q Consensus 627 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~ 662 (1151)
+|++|+|++|. ++.+|..|++|++|++|++..+..
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEEeCCCCcc
Confidence 99999999998 468899999999999998776654
No 140
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.07 E-value=1.4e-09 Score=113.75 Aligned_cols=190 Identities=14% Similarity=0.104 Sum_probs=119.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+....+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 468999999999999997643 22389999999999999999998432 12221223334433333322222211
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc-ccccccCCCce
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED-VSSMVTTPSAA 300 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~ 300 (1151)
....... ..-.+++.+||+||++......++.+...+.....+.++|+||+... +..........
T Consensus 90 -~~~~~~~-------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 90 -KEFARTA-------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp -HHHHTSC-------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred -HHHhccc-------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 1111000 00125789999999976655666677766666556788888887653 22222222227
Q ss_pred eecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 301 YSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 301 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+.+.+++.++..+++.+.+..... ... .+..+.|++.++|.|..+..+...+
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 899999999999999887642111 112 2667889999999999766554433
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.07 E-value=5.5e-10 Score=113.02 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=98.8
Q ss_pred CCCCccccCCCCCccEEEEeCCccccccCCC-C--CCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCC
Q 044085 930 QESLPDGLHKLSHITTISMYGSRLVSFAEGG-L--PSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEE 1006 (1151)
Q Consensus 930 ~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~-~--~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 1006 (1151)
+..+|..+. .+|+.|++++|.++.++... + .++|+.|+|++|.+.+..|..|..+++|++|+|++|.+.+..+..
T Consensus 20 l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred cCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHH
Confidence 456666553 38999999999999887642 3 369999999999999988899999999999999999999888888
Q ss_pred CCCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 1007 VGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 1007 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
|..+++|++|+|++|.+++..+. .+..+++|+.|++++|
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASN 136 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTC
T ss_pred hcCCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCC
Confidence 89999999999999999987655 5889999999999985
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.06 E-value=2.6e-10 Score=126.86 Aligned_cols=101 Identities=15% Similarity=0.058 Sum_probs=82.7
Q ss_pred CCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccc-eeeecCCCCCccCCCCCCCCCCccEE
Q 044085 940 LSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQ-HLEIRACPRIASIPEEVGFPPNITEL 1016 (1151)
Q Consensus 940 l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~l~~L~~L 1016 (1151)
|++|+.+++++|.++.++...|. ++|+.|+|.+| +...-+.+|.++++|+ .+++.+ .+...-+..|..+++|+.|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 78899999999889988888775 68999999887 5444456789999999 999988 5665556788899999999
Q ss_pred EecCCCccccccccCCCCCCCcceEEe
Q 044085 1017 HIEGPNICKLFFDLGFHNLTSVRDLFI 1043 (1151)
Q Consensus 1017 ~Ls~n~l~~~~~~~~~~~l~~L~~L~l 1043 (1151)
++++|.++.+... .|.++++|+.++.
T Consensus 303 ~l~~n~i~~I~~~-aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDE-LFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTT-TTCTTCCCCEEEC
T ss_pred EeCCCccCccchh-hhcCCcchhhhcc
Confidence 9999998877655 5889999988764
No 143
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.06 E-value=1.9e-10 Score=116.28 Aligned_cols=106 Identities=29% Similarity=0.374 Sum_probs=83.9
Q ss_pred CcccEEEecCccccccCccccCCCcccEEEcccccccccc-hhhhcCCCCcEEecccccccccccc-ccccCCccCeeec
Q 044085 556 RRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLP-ESVSTLYNLQTLILERCYRLKKLFP-DIGNLTNLRHLKN 633 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~l 633 (1151)
+.|++|+|++|.++.+|..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++| .+..+|. .|..+++|++|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEEC
Confidence 4688889998888888888888889999999998888775 45888899999999888 5655554 5888889999999
Q ss_pred CCCCccccCcc-cccCccCCCccCeeEeccC
Q 044085 634 SHSNLFEEMPL-RIGKLTSLRTLAKFAVGKS 663 (1151)
Q Consensus 634 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~ 663 (1151)
++|.+. .+|. .+..+++|+.|++..+...
T Consensus 110 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 888854 4554 4778888888877666543
No 144
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.04 E-value=1.6e-09 Score=120.41 Aligned_cols=277 Identities=17% Similarity=0.130 Sum_probs=151.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
..++|++..++.+.+++..... .......+.|+|++|+|||++|+.+++.. ... ..++..+......++.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~~----~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GVN----LRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TCC----EEEECTTTCCSHHHHH---
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CCC----EEEEeccccCChHHHH---
Confidence 5699999999998888763210 00123467899999999999999999832 222 2344433222221111
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC------------------CCcEEEE
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL------------------PGSKIIV 283 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 283 (1151)
..+... ..++.+|++||+..........+...+.... ++.++|.
T Consensus 82 -----------------~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~ 143 (324)
T 1hqc_A 82 -----------------AILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIG 143 (324)
T ss_dssp -----------------HHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEE
T ss_pred -----------------HHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEE
Confidence 111110 1356799999997655445554543333211 2345666
Q ss_pred ecCcc-cccccccC-CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHhcCC--
Q 044085 284 TTRNE-DVSSMVTT-PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLLRGK-- 359 (1151)
Q Consensus 284 Ttr~~-~v~~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~-- 359 (1151)
||... .+...... ....+.+.+++.+|..+++.+.+..... ... .+..+.+++.++|.|..+..+...+...
T Consensus 144 ~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~ 219 (324)
T 1hqc_A 144 ATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQ 219 (324)
T ss_dssp EESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTST
T ss_pred eCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 66543 22222211 1127899999999999998887643221 222 3677889999999998887776554211
Q ss_pred ------CCHHHHHHHHhhhcccC---CCChhhHHHHHHHhhcCCChhHHHHHhhhccCCCCcccChHHHH----HHHHHc
Q 044085 360 ------YDPKDWEDVLNSKIWDL---DEDKSGIMRALRVSYYYLPSHVKRCFAHCSLLPKGYPFDERQIV----LLWMAE 426 (1151)
Q Consensus 360 ------~~~~~w~~~~~~~~~~~---~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li----~~w~a~ 426 (1151)
.+.+....++....... ...+..+...+.-.|..=+......-..+++ ++..+. .+-+..
T Consensus 220 ~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi-------~~~tl~~~l~~~~i~~ 292 (324)
T 1hqc_A 220 VAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSE-------DPGTLEEVHEPYLIRQ 292 (324)
T ss_dssp TTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTS-------CHHHHHHHTHHHHHHT
T ss_pred HhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCC-------CHHHHHHHHhHHHHHh
Confidence 23444444443321110 1011122222222232222222233333333 333332 245678
Q ss_pred CCcccCCCCccHHHHHHHHHH-HHHhCccccc
Q 044085 427 GLLQHKTDGIEMEELGRKSFQ-VLHSRSFFQR 457 (1151)
Q Consensus 427 g~i~~~~~~~~~~~~~~~~~~-~L~~~~l~~~ 457 (1151)
|+|.....+....+.|..||+ ++.+|++||+
T Consensus 293 ~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 293 GLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp TSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred cchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 999866667778899999998 9999999986
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.02 E-value=5.8e-11 Score=145.97 Aligned_cols=120 Identities=22% Similarity=0.256 Sum_probs=101.9
Q ss_pred ccCCCCccEEEccCCCCcccccchhhhhhhhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhc
Q 044085 521 LHEVEYLRTLLALPVSTRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVST 600 (1151)
Q Consensus 521 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~ 600 (1151)
+..+..|+.|.+.++.. ..++.. +..+++|++|+|++|.++.+|..|++|++|++|+|++|.|+.+|..|+.
T Consensus 220 ~~~l~~L~~L~Ls~n~l-------~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI-------FNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp --CCCCCCEEECTTSCC-------SCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hccCCCCcEEECCCCCC-------CCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 45677888888876542 122333 4489999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeccccccccccccccccCCccCeeecCCCCccccCcccccCc
Q 044085 601 LYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIGKL 649 (1151)
Q Consensus 601 L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~L 649 (1151)
|++|++|+|++| .+..+|..|+.+++|++|++++|.+.+.+|..+..+
T Consensus 292 l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 292 CFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 999999999999 788999999999999999999999877777666543
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.99 E-value=4.2e-10 Score=133.74 Aligned_cols=84 Identities=25% Similarity=0.297 Sum_probs=45.8
Q ss_pred cCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEecccccccccc--ccccccCCccC
Q 044085 552 IPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKL--FPDIGNLTNLR 629 (1151)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~l--p~~~~~L~~L~ 629 (1151)
|..+++|++|+|++|.++.+|..|+++++|++|+|++|.|+.+| .++.+++|++|+|++| .+..+ |..+..+++|+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~ 536 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLV 536 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCC
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCC
Confidence 44555555555555555555555555555555555555555555 4555555555555555 34433 45555555555
Q ss_pred eeecCCCC
Q 044085 630 HLKNSHSN 637 (1151)
Q Consensus 630 ~L~l~~~~ 637 (1151)
+|++++|.
T Consensus 537 ~L~L~~N~ 544 (567)
T 1dce_A 537 LLNLQGNS 544 (567)
T ss_dssp EEECTTSG
T ss_pred EEEecCCc
Confidence 55555555
No 147
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=2.6e-09 Score=106.54 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=95.8
Q ss_pred CCCCccccCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCC
Q 044085 930 QESLPDGLHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEV 1007 (1151)
Q Consensus 930 ~~~l~~~l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~ 1007 (1151)
+..+|..+ .++|+.|++++|.++.++...+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 96 (177)
T 2o6r_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVF 96 (177)
T ss_dssp CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHh
Confidence 34555443 37899999999999988876543 699999999999887666668999999999999999987777778
Q ss_pred CCCCCccEEEecCCCccccccccCCCCCCCcceEEeccC
Q 044085 1008 GFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 1008 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
..+++|++|++++|.++.++.. .+..+++|+.|++++|
T Consensus 97 ~~l~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 97 DKLTQLKELALDTNQLKSVPDG-IFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSS
T ss_pred hCCcccCEEECcCCcceEeCHH-HhcCCcccCEEEecCC
Confidence 8999999999999999977754 4788999999999984
No 148
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=3.6e-09 Score=117.56 Aligned_cols=97 Identities=14% Similarity=0.224 Sum_probs=62.2
Q ss_pred CCcccEEEecCccccccCccccCCCcccEEEcccccccccch-hhhc--------CCCCcEEeccccccccccccc-ccc
Q 044085 555 LRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPE-SVST--------LYNLQTLILERCYRLKKLFPD-IGN 624 (1151)
Q Consensus 555 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~-~i~~--------L~~L~~L~L~~~~~l~~lp~~-~~~ 624 (1151)
+++|++|||++|.+......-+.++.++++.+..+ .+|. .|.+ +++|+.|+|.. .+..++.. |..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhc
Confidence 78899999999988832211223333566666555 3433 3666 88899888887 45666554 888
Q ss_pred CCccCeeecCCCCccccCcccccCccCCCccC
Q 044085 625 LTNLRHLKNSHSNLFEEMPLRIGKLTSLRTLA 656 (1151)
Q Consensus 625 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 656 (1151)
+++|+.|++++|.+....+..|..+.++..+.
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIP 154 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEEC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEec
Confidence 88899999888875444444466655555443
No 149
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=6.9e-10 Score=131.85 Aligned_cols=106 Identities=20% Similarity=0.195 Sum_probs=96.2
Q ss_pred cccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCC
Q 044085 557 RLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHS 636 (1151)
Q Consensus 557 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~ 636 (1151)
.|++|+|++|.++.+|. |+++++|++|+|++|.|+.+|..++.+++|++|+|++| .+..+| .++.+++|++|++++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC
Confidence 48999999999999997 99999999999999999999999999999999999999 777788 8999999999999999
Q ss_pred CccccC-cccccCccCCCccCeeEeccCCC
Q 044085 637 NLFEEM-PLRIGKLTSLRTLAKFAVGKSNC 665 (1151)
Q Consensus 637 ~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~ 665 (1151)
.+.+.. |..++.+++|+.|++..+.....
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 965554 89999999999999888766543
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=3e-09 Score=105.29 Aligned_cols=101 Identities=20% Similarity=0.240 Sum_probs=88.1
Q ss_pred cEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCc
Q 044085 944 TTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNI 1023 (1151)
Q Consensus 944 ~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l 1023 (1151)
+.+++++|.++.+|.. ++++|+.|+|++|.+.+..|..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.|
T Consensus 15 ~~l~~~~n~l~~iP~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 6899999999988874 457999999999999887788899999999999999988876566678999999999999999
Q ss_pred cccccccCCCCCCCcceEEeccC
Q 044085 1024 CKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 1024 ~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
+.++.. .+.++++|+.|++++|
T Consensus 94 ~~l~~~-~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 94 KSIPRG-AFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCTT-TTTTCTTCSEEECCSS
T ss_pred ceeCHH-HhccccCCCEEEeCCC
Confidence 987764 4888999999999985
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=3.1e-09 Score=104.89 Aligned_cols=103 Identities=18% Similarity=0.260 Sum_probs=89.8
Q ss_pred CccEEEEeCCccccccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCC
Q 044085 942 HITTISMYGSRLVSFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGP 1021 (1151)
Q Consensus 942 ~L~~L~ls~n~l~~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n 1021 (1151)
..+.+++++|.++.+|.. ++++|+.|+|++|.+.+..|..|..+++|++|+|++|.+.+..+..|..+++|++|+|++|
T Consensus 10 ~~~~l~~s~n~l~~ip~~-~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG-IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEeCCCCcCccCcc-CCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 357899999999998864 4579999999999998877888999999999999999988776777789999999999999
Q ss_pred CccccccccCCCCCCCcceEEeccC
Q 044085 1022 NICKLFFDLGFHNLTSVRDLFIKDG 1046 (1151)
Q Consensus 1022 ~l~~~~~~~~~~~l~~L~~L~l~~~ 1046 (1151)
.|+.++.. .+.++++|+.|++++|
T Consensus 89 ~l~~~~~~-~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRG-AFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred ccCEeCHH-HhcCCCCCCEEEeCCC
Confidence 99987764 4889999999999985
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=4.7e-08 Score=110.72 Aligned_cols=165 Identities=13% Similarity=0.160 Sum_probs=115.5
Q ss_pred cccCCCCCccEEEEeCCccccccCCCCC-CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCC-----ccCCCCCC
Q 044085 935 DGLHKLSHITTISMYGSRLVSFAEGGLP-SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRI-----ASIPEEVG 1008 (1151)
Q Consensus 935 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~-----~~~~~~~~ 1008 (1151)
..|.+|++|+.+.+..+ ++.+....|. .+|+.+.|.+ .+...-..+|.++++|+.+.+.++... ..-+..|.
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~ 297 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE 297 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT
T ss_pred hHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhh
Confidence 34677888888888864 6666666554 6888888843 344444567889999999999887654 24456788
Q ss_pred CCCCccEEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCee
Q 044085 1009 FPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERL 1086 (1151)
Q Consensus 1009 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L 1086 (1151)
.+++|+.++|.+ .++.+... .|.++++|+.+.|.. +++.++ .|.++ +|+.+
T Consensus 298 ~c~~L~~l~l~~-~i~~I~~~-aF~~c~~L~~l~lp~------------------------~l~~I~~~aF~~~-~L~~l 350 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIRILGQG-LLGGNRKVTQLTIPA------------------------NVTQINFSAFNNT-GIKEV 350 (401)
T ss_dssp TCTTCCEECCCT-TCCEECTT-TTTTCCSCCEEEECT------------------------TCCEECTTSSSSS-CCCEE
T ss_pred CCccCCeEEeCC-ceEEEhhh-hhcCCCCccEEEECc------------------------cccEEcHHhCCCC-CCCEE
Confidence 899999999984 46655543 688888888888865 344444 67788 99999
Q ss_pred eEeCCCCCCcCCCC---CCCCCcceEeeccCchHHHhhhhcCccccccc
Q 044085 1087 TLCECPNLISLPKN---GLPPSLVYVDIYSCPYLEERCKVKGVYWHLVA 1132 (1151)
Q Consensus 1087 ~l~~c~~l~~l~~~---~~~~sL~~L~i~~c~~L~~~~~~~g~~~~~i~ 1132 (1151)
++.++ .+..++.. +.+.+++.|++-... .+.++ ....|....
T Consensus 351 ~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~-~a~~W~~f~ 395 (401)
T 4fdw_A 351 KVEGT-TPPQVFEKVWYGFPDDITVIRVPAES--VEKYK-NANGWRDFT 395 (401)
T ss_dssp EECCS-SCCBCCCSSCCCSCTTCCEEEECGGG--HHHHH-HSTTGGGGG
T ss_pred EEcCC-CCcccccccccCCCCCccEEEeCHHH--HHHhh-hccchhhhh
Confidence 99988 56666554 455688899887632 33333 334566543
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=1.9e-09 Score=106.36 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=71.2
Q ss_pred ccEEEecCccccccCccccCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccccc-cccCCccCeeecCC
Q 044085 558 LRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLKNSH 635 (1151)
Q Consensus 558 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~l~~ 635 (1151)
.++|++++|.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. |..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCC
Confidence 4677777777777776653 6777777877777776 555777777888888777 56666654 57777778888777
Q ss_pred CCccccCcccccCccCCCccCeeEeccC
Q 044085 636 SNLFEEMPLRIGKLTSLRTLAKFAVGKS 663 (1151)
Q Consensus 636 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~ 663 (1151)
|.+....+..+..+++|+.|++..+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7744333334777777777776666543
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=1.7e-09 Score=107.09 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=48.7
Q ss_pred cEEEecCccccccCccccCCCcccEEEccccccccc-chhhhcCCCCcEEeccccccccccccc-cccCCccCeeecCCC
Q 044085 559 RVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVL-PESVSTLYNLQTLILERCYRLKKLFPD-IGNLTNLRHLKNSHS 636 (1151)
Q Consensus 559 r~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-~~~L~~L~~L~l~~~ 636 (1151)
+.++++++.++.+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++| .+..+|.. |..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 445555555555554443 4555555555555544 334555555555555555 44444443 345555555555555
Q ss_pred CccccCccc-ccCccCCCccCeeEec
Q 044085 637 NLFEEMPLR-IGKLTSLRTLAKFAVG 661 (1151)
Q Consensus 637 ~~~~~~p~~-i~~L~~L~~L~~~~~~ 661 (1151)
.+. .+|.. +..+++|+.|++..+.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCC
Confidence 532 33332 4555555555444443
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=1.1e-08 Score=113.63 Aligned_cols=188 Identities=14% Similarity=0.157 Sum_probs=118.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|++..++.+.+++.... .+.+.|+|++|+||||+|+.+++... ...+....+++..++...... .+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HHHH
Confidence 468999999999999997643 22388999999999999999998432 111211234444333222221 2222
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc-ccccccCCCc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED-VSSMVTTPSA 299 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~ 299 (1151)
+..+... ...+ .+++.++|+||++......++.+...+.....++++|+||+... +.........
T Consensus 93 ~~~~~~~-------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 93 IKHFAQK-------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCA 159 (323)
T ss_dssp HHHHHHB-------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHHhc-------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhce
Confidence 2221100 0001 34689999999977666667777766666556778888776532 2222222233
Q ss_pred eeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhH-HHHHHH
Q 044085 300 AYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLA-AKTLGG 354 (1151)
Q Consensus 300 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla-i~~~~~ 354 (1151)
.+.+.+++.++..+++...+..... ... .+....|++.|+|.|.. +..+..
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDV-KYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8999999999999999886532111 112 26678899999999954 444433
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=9.7e-11 Score=119.44 Aligned_cols=88 Identities=23% Similarity=0.282 Sum_probs=49.1
Q ss_pred hcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEecccccccccccc--ccccCCcc
Q 044085 551 VIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFP--DIGNLTNL 628 (1151)
Q Consensus 551 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~~~~L~~L 628 (1151)
.+..+++|++|++++|.++.+|..+..+++|++|+|++|.++.+| .+..+++|++|++++| .+..+|. .+..+++|
T Consensus 65 ~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKL 142 (198)
T ss_dssp CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTC
T ss_pred ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCC
Confidence 344555566666666655555555555555666666666655554 4555566666666555 4444433 45555666
Q ss_pred CeeecCCCCccc
Q 044085 629 RHLKNSHSNLFE 640 (1151)
Q Consensus 629 ~~L~l~~~~~~~ 640 (1151)
++|++++|.+..
T Consensus 143 ~~L~l~~N~l~~ 154 (198)
T 1ds9_A 143 EDLLLAGNPLYN 154 (198)
T ss_dssp SEEEECSCHHHH
T ss_pred CEEEecCCcccc
Confidence 666666555433
No 157
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.82 E-value=1.2e-10 Score=118.68 Aligned_cols=108 Identities=20% Similarity=0.262 Sum_probs=94.0
Q ss_pred hhcCCCCcccEEEecCccccccCccccCCCcccEEEcccccccccchhhhcCCCCcEEeccccccccccccccccCCccC
Q 044085 550 HVIPRLRRLRVLSLCGYWILQLPNDIGELKHLRYLEFSRTAIEVLPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLR 629 (1151)
Q Consensus 550 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~ 629 (1151)
..|..+++|++|++++|.++.+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+..+++|+
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 36788999999999999999998 899999999999999999999998999999999999999 777787 689999999
Q ss_pred eeecCCCCccccCc--ccccCccCCCccCeeEec
Q 044085 630 HLKNSHSNLFEEMP--LRIGKLTSLRTLAKFAVG 661 (1151)
Q Consensus 630 ~L~l~~~~~~~~~p--~~i~~L~~L~~L~~~~~~ 661 (1151)
+|++++|.+ ..+| ..+..+++|+.|++..+.
T Consensus 119 ~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 119 VLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EEECCCCcC-CchhHHHHHhcCCCCCEEEecCCc
Confidence 999999984 4444 367888888888766553
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.80 E-value=1.3e-07 Score=107.78 Aligned_cols=78 Identities=8% Similarity=0.052 Sum_probs=44.0
Q ss_pred CccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEe
Q 044085 964 NLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFI 1043 (1151)
Q Consensus 964 ~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l 1043 (1151)
+|+.+.+.++ +...-..+|.++++|+.++|.++ +...-...|..+.+|+.+++..+ ++.+... +|.++++|+.+++
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-aF~~C~~L~~i~l 373 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN-AFQGCINLKKVEL 373 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT-TBTTCTTCCEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH-HhhCCCCCCEEEE
Confidence 4555555433 22222345666777777777543 33333455667777777777655 4444332 5777777777777
Q ss_pred cc
Q 044085 1044 KD 1045 (1151)
Q Consensus 1044 ~~ 1045 (1151)
..
T Consensus 374 p~ 375 (394)
T 4fs7_A 374 PK 375 (394)
T ss_dssp EG
T ss_pred CC
Confidence 55
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=7.1e-08 Score=107.19 Aligned_cols=190 Identities=13% Similarity=0.098 Sum_probs=118.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|++..++.+.+++.... .+.+.|+|++|+||||+|+.+++... ...+....+.+..++.... +..+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHH
Confidence 468999999999999997653 23489999999999999999998432 1111011233332221100 011111
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc-ccccccCCCce
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED-VSSMVTTPSAA 300 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~~ 300 (1151)
+...... .....+++.++|+||++......++.+...+.....++++|+||.... +..........
T Consensus 97 ~~~~~~~-------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 97 VKEFART-------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp HHHHHHS-------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HHHHHhh-------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 1110000 000125688999999977666677777777766556788888886543 22222111227
Q ss_pred eecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 301 YSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 301 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
+.+.+++.++..+++...+..... ... .+..+.|++.++|.|..+..+...+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGL-ELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTC-EEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 899999999999999877643221 112 3677889999999998766655444
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=6.3e-07 Score=101.43 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=38.0
Q ss_pred ccccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 980 PNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 980 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
+.+|.++++|+.+.+.++ +...-...|..+++|+.++|..+ ++.+... .|.++ +|+.+++.+
T Consensus 293 ~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~-aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQINFS-AFNNT-GIKEVKVEG 354 (401)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCEECTT-SSSSS-CCCEEEECC
T ss_pred HHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccEEcHH-hCCCC-CCCEEEEcC
Confidence 345667777777777643 44344455666777777777444 4444332 46677 777777776
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.61 E-value=1.8e-06 Score=98.34 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=70.0
Q ss_pred cCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCcc
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNIT 1014 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 1014 (1151)
+.++..|+.+.+..+.. .+....+. ..++.+....+.+ ....+..+.+|+.+.+.++ +...-...|..+.+|+
T Consensus 249 f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCC
Confidence 44556666666655422 22222222 3455555444321 1234667778888887654 3333345567778888
Q ss_pred EEEecCCCccccccccCCCCCCCcceEEeccCCCCcccccCCCCCcceEEecCCCCCCcCC--CCCCCCCCCeeeEeC
Q 044085 1015 ELHIEGPNICKLFFDLGFHNLTSVRDLFIKDGLEDEVSFQKLPNSLVKLNIREFPGLESLS--FVRNLTSLERLTLCE 1090 (1151)
Q Consensus 1015 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~ 1090 (1151)
.++|.++ ++.+.. .+|.++.+|+.+.+.. +++.++ .|.+|++|+++++..
T Consensus 324 ~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~------------------------~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 324 SIDLPYL-VEEIGK-RSFRGCTSLSNINFPL------------------------SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp EECCCTT-CCEECT-TTTTTCTTCCEECCCT------------------------TCCEECTTTBTTCTTCCEEEEEG
T ss_pred EEEeCCc-ccEEhH-HhccCCCCCCEEEECc------------------------cccEehHHHhhCCCCCCEEEECC
Confidence 8887543 444433 2577777777776654 234443 567777888887764
No 162
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.61 E-value=3.4e-07 Score=98.22 Aligned_cols=172 Identities=13% Similarity=-0.007 Sum_probs=105.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc------cCCCceEEEEeCCCCCHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE------HFPDFRAWAYVSEDFDAVG 216 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~f~~~~~wv~vs~~~~~~~ 216 (1151)
.+.||+++.++|...|...-. +...+.+.|+|++|+|||++|+.|++...... .| ..++|+.....+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~--~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF--DYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE--EEEEEETTCCC--HH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce--EEEEEeccccCCHHH
Confidence 488999999999988865431 23456889999999999999999999553211 12 345666667778889
Q ss_pred HHHHHHHHhcCCC--CCcchHHHHHHHHHH--hcCCceEEEEeCCCCCChhhHHhhhccccCC-CCCc--EEEEecCccc
Q 044085 217 ITKVILQAAVGSV--DVNDLNLLQLQLENQ--LKNKKFLLVLDDMWTENYDDWTNLCKPFKAG-LPGS--KIIVTTRNED 289 (1151)
Q Consensus 217 ~~~~i~~~~~~~~--~~~~~~~~~~~l~~~--l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs--~iivTtr~~~ 289 (1151)
++..|++++.... .....+.+...+... -++++++++||++..-. .-+.+...+.+. ..++ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 9999999996321 112233333333221 24678999999995432 222333333211 1223 3344444433
Q ss_pred cccc-----c--cCCCceeecCCCChhhhHHHHHHhhc
Q 044085 290 VSSM-----V--TTPSAAYSLENLLRDDCLSIFVRHSL 320 (1151)
Q Consensus 290 v~~~-----~--~~~~~~~~l~~L~~~~~~~lf~~~~~ 320 (1151)
.... . ......+.+.+++.+|-.+++.+++-
T Consensus 175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 2211 1 11113689999999999999988763
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.54 E-value=6.9e-08 Score=108.19 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=48.1
Q ss_pred EEecCc-cccccCccccCCCcccEEEccc-ccccccc-hhhhcCCCCcEEecccccccccccc-ccccCCccCeeecCCC
Q 044085 561 LSLCGY-WILQLPNDIGELKHLRYLEFSR-TAIEVLP-ESVSTLYNLQTLILERCYRLKKLFP-DIGNLTNLRHLKNSHS 636 (1151)
Q Consensus 561 L~L~~~-~i~~lp~~i~~l~~Lr~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~~~~L~~L~~L~l~~~ 636 (1151)
++++++ .++.+|. |..+.+|++|+|++ |.|+.+| ..|..|++|++|+|++| .+..+|. .|.+|++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 345554 4555555 55555555555553 5555554 33555555555555555 3333332 3455555555555555
Q ss_pred CccccCcccccCccCCCccCeeEec
Q 044085 637 NLFEEMPLRIGKLTSLRTLAKFAVG 661 (1151)
Q Consensus 637 ~~~~~~p~~i~~L~~L~~L~~~~~~ 661 (1151)
.+ ..+|..+.....|+.|++..+.
T Consensus 91 ~l-~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 91 AL-ESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CC-SCCCSTTTCSCCCCEEECCSSC
T ss_pred cc-ceeCHHHcccCCceEEEeeCCC
Confidence 53 2333332222225555444443
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.49 E-value=1.1e-06 Score=99.42 Aligned_cols=196 Identities=15% Similarity=0.169 Sum_probs=115.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|++..++.+.+++.... ....+.|+|++|+||||+|+.+++.......+ . ...+........+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~-~-------~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-T-------ATPCGVCDNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS-C-------SSCCSSSHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-C-------CCCCcccHHHHHH
Confidence 458999999999999997653 23478899999999999999998743211111 0 0000000011111
Q ss_pred HHHh-------cCC--CCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcc-cc
Q 044085 222 LQAA-------VGS--VDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNE-DV 290 (1151)
Q Consensus 222 ~~~~-------~~~--~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v 290 (1151)
.... ... ....+...+...+... ..+++.++|+||+...+...++.+...+.....+..+|++|... .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1000 000 0111222222111110 13567899999997656666777776666555566777766543 33
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
..........+.+.+++.++..+++.+.+.... .... .+....|++.++|.|..+..+..
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~---~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHE---PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBC---HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 222222223899999999999999887653211 1112 25678899999999998876653
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.45 E-value=1.7e-06 Score=95.43 Aligned_cols=186 Identities=14% Similarity=0.113 Sum_probs=115.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|++..++.+.+++.... .+.+.++|++|+|||++|+.+++... ...+....+.+..+.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~----- 84 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDV----- 84 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTTT-----
T ss_pred HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChHH-----
Confidence 468999999999999886542 22388999999999999999988431 111101223344433211111
Q ss_pred HHHhcCCCCCcchHHHHHHHHHH--h-cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc-ccccccCC
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQ--L-KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED-VSSMVTTP 297 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~ 297 (1151)
........... + .+++-++|+||+........+.+...+.....+.++|+||.... +.......
T Consensus 85 ------------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 152 (319)
T 2chq_A 85 ------------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (319)
T ss_dssp ------------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT
T ss_pred ------------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh
Confidence 11111111111 1 25688999999976555666777777766556778887776543 32222222
Q ss_pred CceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHH
Q 044085 298 SAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGL 355 (1151)
Q Consensus 298 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 355 (1151)
...+.+.+++.++..+++...+..... ... .+..+.+++.++|.+..+......
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTCC-CBC---HHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 238999999999999999877643221 222 266788899999999866554433
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.41 E-value=4.5e-07 Score=101.49 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=71.0
Q ss_pred CCCCccccCCCCCccEEEEeC-CccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCC
Q 044085 930 QESLPDGLHKLSHITTISMYG-SRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEE 1006 (1151)
Q Consensus 930 ~~~l~~~l~~l~~L~~L~ls~-n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~ 1006 (1151)
+..+|. +..+++|+.|+|++ |.|+.++...|. ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence 456777 77888888888886 888887765443 68888888888887777777888888888888888877555555
Q ss_pred CCCCCCccEEEecCCCcc
Q 044085 1007 VGFPPNITELHIEGPNIC 1024 (1151)
Q Consensus 1007 ~~~l~~L~~L~Ls~n~l~ 1024 (1151)
+..++ |+.|+|++|.+.
T Consensus 100 ~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TCSCC-CCEEECCSSCCC
T ss_pred cccCC-ceEEEeeCCCcc
Confidence 55454 888888888865
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.38 E-value=4.8e-06 Score=92.58 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
++++|++..++++..++..... .......|.|+|++|+|||++|+.+++. ....| +.+..+......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~----~~~~~~~~~~~~------ 95 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI----KTTAAPMIEKSG------ 95 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE----EEEEGGGCCSHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe----EEecchhccchh------
Confidence 5799999999999998875311 0123346889999999999999999873 22222 233332211111
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC------------------CCcEEEE
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL------------------PGSKIIV 283 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~iiv 283 (1151)
.....+.. ..+.-+|++|++..........+...+.... ++..+|.
T Consensus 96 --------------~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 159 (338)
T 3pfi_A 96 --------------DLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIG 159 (338)
T ss_dssp --------------HHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEE
T ss_pred --------------HHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEE
Confidence 11111111 2456889999997655555555554443321 1245665
Q ss_pred ecCccc-cccccc-CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 284 TTRNED-VSSMVT-TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 284 Ttr~~~-v~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
+|.... +..... .....+.+.+++.++..+++.+.+..... . .-.+..+.|++.+.|.|-.+..+..
T Consensus 160 atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 160 ATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-T---CEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-E---ECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred eCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 555432 222111 11137999999999999999877632211 1 1236778888999999966554443
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=3.5e-06 Score=94.48 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=117.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|+++.++.+..++.... .+.+.|+|++|+||||+|+.+++.......+......+..+...... ..++.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHH
Confidence 468999999999999986643 22378999999999999999998532221221123334444332222 22222
Q ss_pred HHHhc-CCC-CCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcc-cccccccCCC
Q 044085 222 LQAAV-GSV-DVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNE-DVSSMVTTPS 298 (1151)
Q Consensus 222 ~~~~~-~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~ 298 (1151)
+.... ... ..... .....-.+++-++++|++..........+...+.......++|++|... .+........
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 22221 100 00000 0011112355699999996655556666766666555566777766543 2322222112
Q ss_pred ceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 299 AAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 299 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
..+.+.+++.++....+...+.... .... .+..+.|++.++|.|..+..+..
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~---~~~l~~l~~~~~G~~r~~~~~l~ 236 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQEN-VKCD---DGVLERILDISAGDLRRGITLLQ 236 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTT-CCCC---HHHHHHHHHHTSSCHHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhC-CCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2789999999999999887664322 1222 36788899999999987655433
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.33 E-value=6.3e-06 Score=93.98 Aligned_cols=201 Identities=17% Similarity=0.195 Sum_probs=115.1
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDK---EALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
.+++|.+..+ ..+...+.... ...+.|+|++|+||||+|+.+++. ....| +.++......+-.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~~--~~~~f------~~l~a~~~~~~~i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIARY--ANADV------ERISAVTSGVKEI 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHHH--TTCEE------EEEETTTCCHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHHH--hCCCe------EEEEeccCCHHHH
Confidence 4688998877 67777776643 357899999999999999999983 33333 3333222211222
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc--ccccccC
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED--VSSMVTT 296 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~--v~~~~~~ 296 (1151)
+.++... ......+++.+|++|++..-.....+.+...+..+ .-.-|..||.+.. +......
T Consensus 92 r~~~~~a---------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 92 REAIERA---------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHHHHHH---------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCHHHHT
T ss_pred HHHHHHH---------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCHHHhC
Confidence 2222111 11112467899999999766555556666555543 2222334555542 2222222
Q ss_pred CCceeecCCCChhhhHHHHHHhhcCCCCC---CCCchHHHHHHHHHHHcCCChhHHHHHHHHh---cC-------CCCHH
Q 044085 297 PSAAYSLENLLRDDCLSIFVRHSLGRTDF---SAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL---RG-------KYDPK 363 (1151)
Q Consensus 297 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L---~~-------~~~~~ 363 (1151)
...++.+++++.++...++.+.+...... ....--.+..+.|++.++|.+-.+..+...+ .. .-+.+
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e 235 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPE 235 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHH
Confidence 22378999999999999998876431110 1111223677888888999887666554333 11 13456
Q ss_pred HHHHHHhhh
Q 044085 364 DWEDVLNSK 372 (1151)
Q Consensus 364 ~w~~~~~~~ 372 (1151)
....++...
T Consensus 236 ~v~~~l~~~ 244 (447)
T 3pvs_A 236 LLTEIAGER 244 (447)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHhhh
Confidence 666666543
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.30 E-value=1.7e-05 Score=90.18 Aligned_cols=85 Identities=7% Similarity=0.078 Sum_probs=52.3
Q ss_pred hhhhcCCCC-cccEEEecCccccccC-ccccCCCcccEEEccccc---ccccc-hhhhcCCCCcEEecccccccccccc-
Q 044085 548 VFHVIPRLR-RLRVLSLCGYWILQLP-NDIGELKHLRYLEFSRTA---IEVLP-ESVSTLYNLQTLILERCYRLKKLFP- 620 (1151)
Q Consensus 548 ~~~~~~~l~-~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~n~---i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~- 620 (1151)
...+|.+++ .|+.+.+..+ ++.+. .+|.++.+|+.+.+..+. ++.++ ..|..+.+|+.+.+..+ +..++.
T Consensus 55 g~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~ 131 (394)
T 4gt6_A 55 GDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSE 131 (394)
T ss_dssp CTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTT
T ss_pred CHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhh
Confidence 345566664 4777777643 55564 667777777777776553 55553 34677777777766553 344433
Q ss_pred ccccCCccCeeecCC
Q 044085 621 DIGNLTNLRHLKNSH 635 (1151)
Q Consensus 621 ~~~~L~~L~~L~l~~ 635 (1151)
.|..+.+|+.+.+..
T Consensus 132 aF~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE 146 (394)
T ss_dssp TTTTCTTCCEEECCT
T ss_pred hhhhhcccccccccc
Confidence 366677777776654
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.28 E-value=4.2e-06 Score=93.80 Aligned_cols=199 Identities=11% Similarity=0.070 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc----cC-----------------
Q 044085 142 DEVYGREKDKEALVGLL-RRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE----HF----------------- 199 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f----------------- 199 (1151)
.+++|.+...+.+.+++ .... ... +.|+|+.|+||||+|+.++....-.. .+
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 46889999999888887 4332 223 89999999999999999887321000 00
Q ss_pred --CCceEEEEeCCCC-CHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC
Q 044085 200 --PDFRAWAYVSEDF-DAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL 276 (1151)
Q Consensus 200 --~~~~~wv~vs~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~ 276 (1151)
....+.+..+... ......++++..+......... . .+.. +.+++-++|+|++..-+......+...+....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-----------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 0001111111100 0000122233222210000000 0 0000 23467799999997766666666766665544
Q ss_pred CCcEEEEecCcc-cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCC-chHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 277 PGSKIIVTTRNE-DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAH-QYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 277 ~gs~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~-~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
.+..+|++|... .+..........+.+++++.++..+.+.+.+....- ... + +....|++.++|.+-.+..+..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETK---DILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCS---HHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcH---HHHHHHHHHcCCCHHHHHHHHH
Confidence 567777777653 333333323348999999999999998876632211 111 2 6678899999999876665544
Q ss_pred H
Q 044085 355 L 355 (1151)
Q Consensus 355 ~ 355 (1151)
.
T Consensus 239 ~ 239 (354)
T 1sxj_E 239 S 239 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.25 E-value=1.6e-06 Score=87.76 Aligned_cols=46 Identities=24% Similarity=0.405 Sum_probs=38.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..++||+++++++.+++.... .+.+.|+|++|+|||++|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999986632 3467899999999999999998843
No 173
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.24 E-value=1.6e-06 Score=91.37 Aligned_cols=176 Identities=15% Similarity=0.134 Sum_probs=100.3
Q ss_pred Cccccc---hhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGR---EKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
++++|. +...+.+..+.... ..+.+.|+|++|+||||+|+.+++... ... ....|+.+++-.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~-~~~~~~~~~~~~~~---- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARAN--ELE-RRSFYIPLGIHASI---- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHH--HTT-CCEEEEEGGGGGGS----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcC-CeEEEEEHHHHHHH----
Confidence 356663 34556666665432 235788999999999999999998433 322 34567766432110
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhh--HHhhhccccCC--CCCcEEEEecCcccc--c-
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDD--WTNLCKPFKAG--LPGSKIIVTTRNEDV--S- 291 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~--~~~l~~~l~~~--~~gs~iivTtr~~~v--~- 291 (1151)
+. . .+ +.+ .++-+||+||+....... .+.+...+... ....++|+||+...- .
T Consensus 95 --~~-~---------------~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 95 --ST-A---------------LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp --CG-G---------------GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTC
T ss_pred --HH-H---------------HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 00 0 00 001 346799999996532222 33333332211 112247777764321 0
Q ss_pred --cccc-CC--CceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHH
Q 044085 292 --SMVT-TP--SAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGG 354 (1151)
Q Consensus 292 --~~~~-~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 354 (1151)
.... .. ...+.+.+++.++..+++...+.... .... .+..+.+++.++|.+-.+..+..
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 1111 00 13799999999999999988764221 1222 36778899999998877665544
No 174
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.21 E-value=1.8e-05 Score=85.47 Aligned_cols=187 Identities=16% Similarity=0.102 Sum_probs=102.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-.+++|.+..+++|.+++...... +....+.+.|+|++|+|||++|+.+++. ....| +.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~----~~v~~~~~~~ 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF----IRVVGSELVK 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE----EEEEGGGGCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEehHHHHH
Confidence 357899999999998887442000 0012346889999999999999999983 22222 2333222111
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-----------ChhhHHhh---hcccc--CCCC
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-----------NYDDWTNL---CKPFK--AGLP 277 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l---~~~l~--~~~~ 277 (1151)
.............+......++.+|++||+..- +......+ ...+. ....
T Consensus 90 --------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 90 --------------KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp --------------CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred --------------hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 000111112222233333456789999999421 11111222 22221 1224
Q ss_pred CcEEEEecCcccccc-cccC---CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCC-ChhHHHHH
Q 044085 278 GSKIIVTTRNEDVSS-MVTT---PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNG-SPLAAKTL 352 (1151)
Q Consensus 278 gs~iivTtr~~~v~~-~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~ 352 (1151)
+..||.||....... .... ....+.+...+.++..+++...+..... ....+ ...+++.+.| .|-.+..+
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHHH
Confidence 667888887653322 1111 1126899999999999999887643221 12222 4567777777 45444443
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.20 E-value=7.4e-06 Score=92.33 Aligned_cols=199 Identities=13% Similarity=0.095 Sum_probs=107.4
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeC----CCCCH
Q 044085 142 DEVYGREKDKEA---LVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVS----EDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs----~~~~~ 214 (1151)
+.++|++..++. +.+.+..... ..+.+.|+|++|+|||++|+.+++... ... ..+.+... .....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~----~~~~vLl~GppGtGKT~la~~la~~l~--~~~--~~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKI----AGRAVLIAGQPGTGKTAIAMGMAQALG--PDT--PFTAIAGSEIFSLEMSK 115 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEEESTTSSHHHHHHHHHHHHC--SSC--CEEEEEGGGGSCSSSCH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCC----CCCEEEEECCCCCCHHHHHHHHHHHhc--ccC--Ccccccchhhhhcccch
Confidence 469999988776 4555544321 235789999999999999999998432 221 11222221 12233
Q ss_pred HHHHHHHHHHhcC-------------------------------CCCCcchHHHHHHHHHHh-----cCC----ceEEEE
Q 044085 215 VGITKVILQAAVG-------------------------------SVDVNDLNLLQLQLENQL-----KNK----KFLLVL 254 (1151)
Q Consensus 215 ~~~~~~i~~~~~~-------------------------------~~~~~~~~~~~~~l~~~l-----~~k----~~LlVl 254 (1151)
.+........... .............+.... .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 3344333332110 000000122222222211 233 459999
Q ss_pred eCCCCCChhhHHhhhccccCCCCCcEEEEecC-cc------------cccccccCCCceeecCCCChhhhHHHHHHhhcC
Q 044085 255 DDMWTENYDDWTNLCKPFKAGLPGSKIIVTTR-NE------------DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLG 321 (1151)
Q Consensus 255 Ddvw~~~~~~~~~l~~~l~~~~~gs~iivTtr-~~------------~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 321 (1151)
|++...+......+...+...... .++++|. .. .+..........+.+.+++.++..+++...+..
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~ 274 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEE 274 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHH
Confidence 999766556666666666544333 3443432 11 111111111126899999999999999877643
Q ss_pred CCCCCCCchHHHHHHHHHHHcC-CChhHHHHHH
Q 044085 322 RTDFSAHQYLSEIGEKIVDKCN-GSPLAAKTLG 353 (1151)
Q Consensus 322 ~~~~~~~~~~~~~~~~i~~~c~-g~Plai~~~~ 353 (1151)
... ... .+..+.|++.+. |.|-.+..+.
T Consensus 275 ~~~-~~~---~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 275 EDV-EMS---EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp TTC-CBC---HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred cCC-CCC---HHHHHHHHHHhcCCCHHHHHHHH
Confidence 221 122 366778888887 7776555443
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.16 E-value=1.5e-05 Score=91.19 Aligned_cols=183 Identities=19% Similarity=0.121 Sum_probs=106.2
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
...+.|+|++|+||||||+.+++ .....+++ ..++++.. .+..++...+... . ...+...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~--~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~----~----~~~~~~~~~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGN--YVVQNEPDLRVMYITSE------KFLNDLVDSMKEG----K----LNEFREKYRK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHH--HHHHHCCSSCEEEEEHH------HHHHHHHHHHHTT----C----HHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHhCCCCeEEEeeHH------HHHHHHHHHHHcc----c----HHHHHHHhcC
Confidence 45789999999999999999998 44344422 23444432 3344444444311 1 1223344444
Q ss_pred CceEEEEeCCCCCCh--hhHHhhhccccC-CCCCcEEEEecCccc-----c----cccccCCCceeecCCCChhhhHHHH
Q 044085 248 KKFLLVLDDMWTENY--DDWTNLCKPFKA-GLPGSKIIVTTRNED-----V----SSMVTTPSAAYSLENLLRDDCLSIF 315 (1151)
Q Consensus 248 k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~-----v----~~~~~~~~~~~~l~~L~~~~~~~lf 315 (1151)
+.-+|++||+..... ...+.+...+.. ...|..||+||.... + ...+... ..+.+++++.++..+++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g-~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG-LVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS-BCCBCCCCCHHHHHHHH
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC-eEEEeCCCCHHHHHHHH
Confidence 678999999954321 233344444322 134678888887631 1 1112111 27899999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh------cCC-CCHHHHHHHHhhh
Q 044085 316 VRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL------RGK-YDPKDWEDVLNSK 372 (1151)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L------~~~-~~~~~w~~~~~~~ 372 (1151)
.+.+.... ...++ ++...|++.++|.+-.+..+...+ .++ -+.+.+..++...
T Consensus 273 ~~~~~~~~-~~i~~---e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 273 RKMLEIEH-GELPE---EVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHT-CCCCT---THHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHcC-CCCCH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 88764211 12222 457788899999886554433222 122 3556666666543
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.15 E-value=1.3e-05 Score=88.41 Aligned_cols=185 Identities=15% Similarity=0.131 Sum_probs=107.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
++++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++.. .. ..+.++.+.. . .+..+..
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~~----~~~~i~~~~~-~-~~~i~~~ 92 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--NA----DMMFVNGSDC-K-IDFVRGP 92 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--TE----EEEEEETTTC-C-HHHHHTH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--CC----CEEEEccccc-C-HHHHHHH
Confidence 578999999999999998543 33578888999999999999998833 22 2344444332 2 2222222
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC-hhhHHhhhccccCCCCCcEEEEecCccc-ccccccCCCc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN-YDDWTNLCKPFKAGLPGSKIIVTTRNED-VSSMVTTPSA 299 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-~~~~~~l~~~l~~~~~gs~iivTtr~~~-v~~~~~~~~~ 299 (1151)
+....... ...+++-++++||+..-. ....+.+...+.....+.++|+||.... +.........
T Consensus 93 ~~~~~~~~--------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 93 LTNFASAA--------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHHBC--------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHHhhc--------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 22111000 012367899999996654 4455556555544334667887776543 2222211123
Q ss_pred eeecCCCChhhhHHH-------HHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHHHHh
Q 044085 300 AYSLENLLRDDCLSI-------FVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLGGLL 356 (1151)
Q Consensus 300 ~~~l~~L~~~~~~~l-------f~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 356 (1151)
.+.+++++.++-.++ +...+.. ......+ .+....|++.++|.+-.+...-..+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~-~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKH-EGIAIAD--MKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHH-HTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 789999998874332 2222211 1111111 2567788889988876544443333
No 178
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.13 E-value=4.6e-05 Score=81.10 Aligned_cols=189 Identities=11% Similarity=0.059 Sum_probs=99.8
Q ss_pred CccccchhhHHHHHHHHhc---CCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRR---DDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
.+++|.+..++++.+++.. ... -+....+.+.|+|++|+|||++|+.+++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~----~~~~~~~~~~~~- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP----FLAMAGAEFVEV- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC----EEEEETTTTSSS-
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC----EEEechHHHHhh-
Confidence 5689999888777665432 110 01123346789999999999999999983 2222 234444332110
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC------------h---hhHHhhhccccC--CCCC
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN------------Y---DDWTNLCKPFKA--GLPG 278 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~------------~---~~~~~l~~~l~~--~~~g 278 (1151)
............+.......+.+|++||+..-. . .....+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000111122222333334567899999995420 0 111222222222 1235
Q ss_pred cEEEEecCcccc-ccccc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh-HHHHHH
Q 044085 279 SKIIVTTRNEDV-SSMVT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL-AAKTLG 353 (1151)
Q Consensus 279 s~iivTtr~~~v-~~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 353 (1151)
..||.||..... ..... .....+.+...+.++-.+++...+..... ..........+++.+.|.+- .+..+.
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 567777765432 11111 12237788999999999998876643221 11112234778888888754 444443
No 179
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.4e-06 Score=84.07 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=18.2
Q ss_pred cceEEecCCCCCCcCC--CCCCCCCCCeeeEeCCCCCCc
Q 044085 1060 LVKLNIREFPGLESLS--FVRNLTSLERLTLCECPNLIS 1096 (1151)
Q Consensus 1060 L~~L~l~~c~~l~~l~--~l~~l~~L~~L~l~~c~~l~~ 1096 (1151)
|++|++++|+++++-. .+.++++|++|+|++|+.++.
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 4444444455554422 333455555555555555443
No 180
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.11 E-value=2.7e-05 Score=83.31 Aligned_cols=173 Identities=15% Similarity=0.142 Sum_probs=91.2
Q ss_pred CccccchhhHHHHHH-------HHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVG-------LLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
+.++|.....++++. .+.... ....+.+.|+|++|+|||++|+.+++. ....| +.+..+...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~----~~i~~~~~~-- 101 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF----IKICSPDKM-- 101 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE----EEEECGGGC--
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEeCHHHh--
Confidence 356777776666555 333221 235678899999999999999999984 22222 223322211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC----------ChhhHHhhhccccC---CCCCcEE
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE----------NYDDWTNLCKPFKA---GLPGSKI 281 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~----------~~~~~~~l~~~l~~---~~~gs~i 281 (1151)
...............+......++.+|++||+..- .......+...+.. ......|
T Consensus 102 -----------~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 102 -----------IGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp -----------TTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred -----------cCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 00000000112222333334467889999998321 11112233332222 2233456
Q ss_pred EEecCccccccc---ccCCCceeecCCCCh-hhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044085 282 IVTTRNEDVSSM---VTTPSAAYSLENLLR-DDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS 345 (1151)
Q Consensus 282 ivTtr~~~v~~~---~~~~~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 345 (1151)
|.||........ .......+.+.+++. ++...++.+.. ... .+....|++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcCC
Confidence 777776543221 111123688899988 66666665431 111 25677888888884
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.1e-05 Score=94.79 Aligned_cols=195 Identities=13% Similarity=0.167 Sum_probs=107.7
Q ss_pred CccccchhhHHHHHHHHhcCCC-----------CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC
Q 044085 142 DEVYGREKDKEALVGLLRRDDL-----------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE 210 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~-----------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~ 210 (1151)
.+++|++..++++.+|+..... .+.+..+.+.|+|++|+||||+|+.+++.. .+ ..+.+..+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~--~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY--DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC--EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC--CEEEEeCCC
Confidence 5699999999999999975110 001134688999999999999999999843 12 234455554
Q ss_pred CCCHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHHhcCCceEEEEeCCCCCC---hhhHHhhhccccCCCCCcEEEEecC
Q 044085 211 DFDAVGITKVILQAAVGSVDVND-LNLLQLQLENQLKNKKFLLVLDDMWTEN---YDDWTNLCKPFKAGLPGSKIIVTTR 286 (1151)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~l~~~l~~k~~LlVlDdvw~~~---~~~~~~l~~~l~~~~~gs~iivTtr 286 (1151)
..... +....+........... ...... .....+++.+|++|++.... ...+..+...+... +..||+++.
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~ 187 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICN 187 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEES
T ss_pred cchHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEc
Confidence 44332 22222222211000000 000000 00123578899999995422 12234444433332 334555544
Q ss_pred ccc---ccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh-hHHHHH
Q 044085 287 NED---VSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP-LAAKTL 352 (1151)
Q Consensus 287 ~~~---v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~ 352 (1151)
... +.. .......+.+++++.++..+.+...+..... ...+ +....|++.++|.+ -|+..+
T Consensus 188 ~~~~~~l~~-l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~---~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 188 ERNLPKMRP-FDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDP---NVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp CTTSSTTGG-GTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCT---THHHHHHHHTTTCHHHHHHHH
T ss_pred CCCCccchh-hHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCH---HHHHHHHHHcCCcHHHHHHHH
Confidence 322 222 2222237899999999999988776543221 1222 45778899999955 445444
No 182
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.08 E-value=2.5e-07 Score=103.63 Aligned_cols=82 Identities=18% Similarity=0.240 Sum_probs=39.7
Q ss_pred CcccEEEecCccccccC-----cccc-CCCcccEEEcccccccc--cchhhhcCCCCcEEeccccccccccc-cc----c
Q 044085 556 RRLRVLSLCGYWILQLP-----NDIG-ELKHLRYLEFSRTAIEV--LPESVSTLYNLQTLILERCYRLKKLF-PD----I 622 (1151)
Q Consensus 556 ~~Lr~L~L~~~~i~~lp-----~~i~-~l~~Lr~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~----~ 622 (1151)
+.|++|+|++|.++... ..+. ...+|++|+|++|.|+. +..-...+++|++|+|++| .+.... .. +
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 44666666666654321 1221 22466666666666552 1122233455666666666 332211 11 1
Q ss_pred -ccCCccCeeecCCCCc
Q 044085 623 -GNLTNLRHLKNSHSNL 638 (1151)
Q Consensus 623 -~~L~~L~~L~l~~~~~ 638 (1151)
...++|++|++++|.+
T Consensus 151 ~~~~~~L~~L~Ls~n~l 167 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPL 167 (372)
T ss_dssp HSTTCCCCEEECCSSCC
T ss_pred HhcCCccceeeCCCCCC
Confidence 2345566666666653
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.03 E-value=7.4e-05 Score=82.32 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhc-------------------cCCCceEEEEe
Q 044085 148 EKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEE-------------------HFPDFRAWAYV 208 (1151)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~f~~~~~wv~v 208 (1151)
++..+.+.+.+..+. -...+.++|+.|+|||++|+.+.+...-.. ..++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 445667777776543 235788999999999999999987432110 0012 122222
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHh-----cCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEE
Q 044085 209 SEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQL-----KNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIV 283 (1151)
Q Consensus 209 s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iiv 283 (1151)
... ......+... .+.+.+ .+++-++|+|++...+....+.+...+.....++.+|+
T Consensus 82 ~~~-----------------~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il 143 (334)
T 1a5t_A 82 EKG-----------------KNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFL 143 (334)
T ss_dssp CTT-----------------CSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEE
T ss_pred ccc-----------------CCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 100 0011122221 122222 24678999999976666666777777766555677666
Q ss_pred ecCcc-cccccccCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 284 TTRNE-DVSSMVTTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 284 Ttr~~-~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
+|.+. .+........+.+.++++++++..+.+.+.. ... .+.+..+++.++|.|..+..+
T Consensus 144 ~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 144 ATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 66553 3444444444489999999999999888764 111 255678999999999776554
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.01 E-value=2.7e-05 Score=85.24 Aligned_cols=159 Identities=14% Similarity=0.057 Sum_probs=92.5
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 143 EVYGREKDKEALVGLLRRDD---------LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
+++|.+..++.|.+++.... -........+.|+|++|+|||++|+.+++........ ...-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYV-RKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSS-SSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCc-CCCcEEEEcHH--
Confidence 58999999988887664210 0001234468999999999999999888843222222 11223444311
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC---------ChhhHHhhhccccCCCCCcEEEEe
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE---------NYDDWTNLCKPFKAGLPGSKIIVT 284 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~---------~~~~~~~l~~~l~~~~~gs~iivT 284 (1151)
.+...............+... +.-+|++|++..- .......+...+.....+..||.|
T Consensus 109 ----------~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ----------DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ----------GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ----------HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 011000111111222222222 3569999999622 445556666666666567788888
Q ss_pred cCccc----------ccccccCCCceeecCCCChhhhHHHHHHhhc
Q 044085 285 TRNED----------VSSMVTTPSAAYSLENLLRDDCLSIFVRHSL 320 (1151)
Q Consensus 285 tr~~~----------v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 320 (1151)
|.... +...+. ..+.+.+++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~---~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIA---HHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEE---EEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCC---eEEEcCCcCHHHHHHHHHHHHH
Confidence 86432 222221 3789999999999999887664
No 185
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.00 E-value=0.00048 Score=77.71 Aligned_cols=105 Identities=11% Similarity=0.065 Sum_probs=60.1
Q ss_pred cCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCcc
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNIT 1014 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 1014 (1151)
+..+.+|+.+.+..+ +..+....+. .+|+.+.+..+ +...-...+.++.+|+.+.+..+ +...-...|..+++|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 445566666665442 3333333332 46666666544 22222345667777777777543 3333344566777777
Q ss_pred EEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 1015 ELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1015 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
.+.+.++.++.+... .|.++.+|+.+.|..
T Consensus 290 ~i~l~~~~i~~I~~~-aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 290 KVVMDNSAIETLEPR-VFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECCTTCCEECTT-TTTTCTTCCEEECCT
T ss_pred cccccccccceehhh-hhcCCCCCCEEEcCc
Confidence 777777766655443 577777777776654
No 186
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.91 E-value=0.00027 Score=77.45 Aligned_cols=186 Identities=16% Similarity=0.044 Sum_probs=102.5
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRD-------DLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
.+++|.+..++.|.+++... .. .....+-|.++|++|+|||+||+.+++. ....| +.+..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~----~~v~~~----- 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF----FSVSSS----- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE----EEEEHH-----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE----EEEchH-----
Confidence 57899999999998877310 11 1123456899999999999999999983 33333 223221
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHH-HHHHHHhcCCceEEEEeCCCCCCh-----------hhHHhhhcccc---CCCCCc
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQ-LQLENQLKNKKFLLVLDDMWTENY-----------DDWTNLCKPFK---AGLPGS 279 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~---~~~~gs 279 (1151)
++ .... ....+... ..+...-..++.+|++|++..-.. .....+...+. ....+.
T Consensus 86 -~l----~~~~-----~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 -DL----VSKW-----MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp -HH----HTTT-----GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred -HH----hhcc-----cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 1000 01112222 222223345678999999953110 11233332222 223456
Q ss_pred EEEEecCcccc-cccc-cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC-hhHHHHHH
Q 044085 280 KIIVTTRNEDV-SSMV-TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS-PLAAKTLG 353 (1151)
Q Consensus 280 ~iivTtr~~~v-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 353 (1151)
.||.||..... ...+ ......+.+...+.++-.+++...+..... ... ......|++.+.|. +-.|..+.
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66767765432 1111 111226788889999999999887643221 111 24567788888874 44444443
No 187
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.90 E-value=0.00015 Score=80.52 Aligned_cols=188 Identities=12% Similarity=0.037 Sum_probs=102.5
Q ss_pred CccccchhhHHHHHHHHhcC----CC--CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRD----DL--NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
.+++|.+..+++|.+++... .. ......+.|.|+|++|+|||++|+.+++. .... .+.+..+.-...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~----~~~i~~~~l~~~- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT----FFSISASSLTSK- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE----EEEEEGGGGCCS-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe----EEEEehHHhhcc-
Confidence 56899999999998877531 00 00123457889999999999999999883 2222 234444322110
Q ss_pred HHHHHHHHHhcCCCCCcchHHH-HHHHHHHhcCCceEEEEeCCCCC-----------ChhhHHhhhccccC----CCCCc
Q 044085 216 GITKVILQAAVGSVDVNDLNLL-QLQLENQLKNKKFLLVLDDMWTE-----------NYDDWTNLCKPFKA----GLPGS 279 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~~----~~~gs 279 (1151)
. ....+.. ...+...-..++.+|+||++..- ....+..+...+.. ...+.
T Consensus 157 -------------~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 157 -------------W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -------------c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 0011111 11222222456789999999311 00112233333322 12344
Q ss_pred EEEEecCcc-cccccccC-CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCC-ChhHHHHHHH
Q 044085 280 KIIVTTRNE-DVSSMVTT-PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNG-SPLAAKTLGG 354 (1151)
Q Consensus 280 ~iivTtr~~-~v~~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~~ 354 (1151)
.||.||... .+...... ....+.+...+.++..+++...+..... ... .+....|++.+.| .+-++..+..
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Ccc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566566543 23222211 1226788888999888888776633211 111 2567788889988 4555555543
No 188
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.90 E-value=0.0015 Score=73.71 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=63.4
Q ss_pred cCCCCCccEEEEeCCccccccCCCCC--CCccEEEEcCCCCcccCccccCCCCccceeeecCCCCCccCCCCCCCCCCcc
Q 044085 937 LHKLSHITTISMYGSRLVSFAEGGLP--SNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIASIPEEVGFPPNIT 1014 (1151)
Q Consensus 937 l~~l~~L~~L~ls~n~l~~~~~~~~~--~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 1014 (1151)
+.++..|+.+.+..+ ++.+....+. .+|+.+.+..+ +...-...|.++++|+.+.+.++.+...-...|..+.+|+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 344555555555443 3444333332 35666665433 2222234577888888888877766655566778888888
Q ss_pred EEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 1015 ELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 1015 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
.+.|..+ ++.+.. .+|.++.+|+.+.+..
T Consensus 314 ~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 314 SVTLPTA-LKTIQV-YAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTT-CCEECT-TTTTTCTTCCCCCCCT
T ss_pred EEEcCcc-ccEEHH-HHhhCCCCCCEEEECC
Confidence 8888644 544433 3688888888776654
No 189
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.90 E-value=2.6e-06 Score=95.36 Aligned_cols=105 Identities=16% Similarity=0.114 Sum_probs=53.1
Q ss_pred CCcccEEEecCccccccC-----ccc-cCCCcccEEEcccccccc-----cchhhhcCCCCcEEeccccccccc-----c
Q 044085 555 LRRLRVLSLCGYWILQLP-----NDI-GELKHLRYLEFSRTAIEV-----LPESVSTLYNLQTLILERCYRLKK-----L 618 (1151)
Q Consensus 555 l~~Lr~L~L~~~~i~~lp-----~~i-~~l~~Lr~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~-----l 618 (1151)
+++|++|+|++|.++... ..+ ....+|++|+|++|.|+. ++..+..+++|++|+|++| .+.. +
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L 203 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELL 203 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHH
Confidence 445666666666654321 112 234556666666666552 3444455666666666666 3322 2
Q ss_pred ccccccCCccCeeecCCCCcccc----CcccccCccCCCccCeeEe
Q 044085 619 FPDIGNLTNLRHLKNSHSNLFEE----MPLRIGKLTSLRTLAKFAV 660 (1151)
Q Consensus 619 p~~~~~L~~L~~L~l~~~~~~~~----~p~~i~~L~~L~~L~~~~~ 660 (1151)
+..+...++|++|++++|.+... ++..+...++|++|++..+
T Consensus 204 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 204 AAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 33455555666666666654321 2222334455555554444
No 190
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=5.2e-06 Score=91.95 Aligned_cols=37 Identities=19% Similarity=0.121 Sum_probs=20.5
Q ss_pred ccccCCcccEEEeccCcCcccCCCCCCCCccEEEEccc
Q 044085 847 AAKGFHSLRELSIINCSKLKGRLPQRFSSLERVVIRSC 884 (1151)
Q Consensus 847 ~~~~l~~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~ 884 (1151)
.+..+|+|+.|.|++|..+. ..+-..++|+.|.+..|
T Consensus 167 ll~~~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~ 203 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISG 203 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECS
T ss_pred HHhcCCCCcEEEEeCCCCce-eccccCCCCcEEEEecC
Confidence 33467888888887753333 11122455666665544
No 191
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.86 E-value=1.9e-05 Score=74.96 Aligned_cols=114 Identities=15% Similarity=-0.039 Sum_probs=69.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVIL 222 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~ 222 (1151)
.++|+...++++.+.+..... ...-|.|+|.+|+|||++|+.+++.... ... ..+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~--~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQG--EFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTS--CCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCC--CEE-EECCCCCcc--------
Confidence 578999999999988765321 1124689999999999999999984321 111 123 555543222
Q ss_pred HHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc
Q 044085 223 QAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN 287 (1151)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~ 287 (1151)
... ...+.. .+.-.|++|++..-.......+...+.......+||.||..
T Consensus 66 ---------~~~---~~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQL---NDFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCH---HHHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhh---hcHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 000 111111 13457899999776666666676666555556678777764
No 192
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.0011 Score=75.18 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=36.9
Q ss_pred cccCCCCccceeeecCCCCCccCCCCCCCCCCccEEEecCCCccccccccCCCCCCCcceEEecc
Q 044085 981 NGIYNLSSLQHLEIRACPRIASIPEEVGFPPNITELHIEGPNICKLFFDLGFHNLTSVRDLFIKD 1045 (1151)
Q Consensus 981 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~l~~ 1045 (1151)
.+|.++.+|+.+.+.++ ....-...|..+++|+.+.+. +.++.+.. ..|.++.+|+.+.|..
T Consensus 259 ~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~-~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPE-SVFAGCISLKSIDIPE 320 (394)
T ss_dssp TTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECT-TTTTTCTTCCEEECCT
T ss_pred ceeeecccccEEecccc-cceecCcccccccccccccCC-CcccccCc-eeecCCCCcCEEEeCC
Confidence 35666777777777554 222334456667777777775 33444433 2577777777777654
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.84 E-value=0.00057 Score=74.53 Aligned_cols=190 Identities=15% Similarity=0.057 Sum_probs=101.2
Q ss_pred CccccchhhHHHHHHHHhcC----C--CCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRD----D--LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
++++|.+..++.|.+.+... . .......+.|.++|++|+|||+||+.+++... ... .+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~----~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST----FFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE----EEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc----EEEEEhHHHHh--
Confidence 57899999888888766321 0 00112335788999999999999999998421 112 22333332111
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-------Chh----hHHhhhccccC---CCCCcEE
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-------NYD----DWTNLCKPFKA---GLPGSKI 281 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-------~~~----~~~~l~~~l~~---~~~gs~i 281 (1151)
.............+...-..++.+|++|++..- ... ....+...+.. ...+..|
T Consensus 85 ------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 ------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp ------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred ------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 000111122222222223467889999999531 000 11222222221 2234556
Q ss_pred EEecCccc-ccccc-cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC-hhHHHHHHH
Q 044085 282 IVTTRNED-VSSMV-TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS-PLAAKTLGG 354 (1151)
Q Consensus 282 ivTtr~~~-v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~~ 354 (1151)
|.||.... +.... ......+.+...+.++-.+++......... ... ......|++.+.|. +-.|..+..
T Consensus 153 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SLT---EADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CCC---HHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 66665442 22111 122236788888888888888876632211 111 24567788899887 444555443
No 194
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=4e-05 Score=76.04 Aligned_cols=121 Identities=16% Similarity=0.140 Sum_probs=65.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 147 REKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
.+...+.+.+++..-.. .....+.|+|+.|+||||||+.+++.......+ .+++++ ..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFD------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEE------HHHHHHHHHHHhc
Confidence 44555556666544322 123588999999999999999999844312222 334443 3344444443333
Q ss_pred CCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHH--hhhccccCC-CCCcEEEEecCc
Q 044085 227 GSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWT--NLCKPFKAG-LPGSKIIVTTRN 287 (1151)
Q Consensus 227 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~--~l~~~l~~~-~~gs~iivTtr~ 287 (1151)
..... ... ..+. +.-+|||||++......|. .+...+... ..|..||+||..
T Consensus 88 ~~~~~----~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKDT----KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCCS----HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchHH----HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 11111 111 1222 4679999999743333443 233333221 246788888864
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=0.00017 Score=79.92 Aligned_cols=186 Identities=11% Similarity=0.155 Sum_probs=107.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.+..++.|..++..+. .+.+.++|+.|+||||+|+.+++... ...+......+..+.......+ ++.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-RNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-HTH
T ss_pred HHhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-HHH
Confidence 457899988898988887643 22388999999999999999988432 1111011222222222222111 111
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcc-cccccccCCCce
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNE-DVSSMVTTPSAA 300 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~-~v~~~~~~~~~~ 300 (1151)
+..+.... ..+.+.+-++|+|++........+.+...+.......++|++|... .+..........
T Consensus 97 i~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 97 IKDFASTR-------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp HHHHHHBC-------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHhhc-------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 11111000 0012346789999996555556666666655544566777666543 232222222237
Q ss_pred eecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHH
Q 044085 301 YSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTL 352 (1151)
Q Consensus 301 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 352 (1151)
+.+.++++++..+.+...+-... .... .+..+.|++.++|.+--+..+
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~-~~i~---~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEK-LKLS---PNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTT-CCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 89999999998888876652211 1122 256788899999988754433
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=1.5e-05 Score=88.19 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=29.8
Q ss_pred cchhhhcCCCCcEEeccccccccccccccccCCccCeeecCCCCccccCccccc--CccCCCccCe
Q 044085 594 LPESVSTLYNLQTLILERCYRLKKLFPDIGNLTNLRHLKNSHSNLFEEMPLRIG--KLTSLRTLAK 657 (1151)
Q Consensus 594 lp~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~--~L~~L~~L~~ 657 (1151)
++..+..+++|+.|.|++|..+ .+|. + .+++|++|++..|.+.......+. .+++|+.|++
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL 226 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence 3344555666666666665222 2332 2 256666666665553222212222 4555555544
No 197
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.81 E-value=0.00038 Score=77.14 Aligned_cols=189 Identities=16% Similarity=0.047 Sum_probs=100.7
Q ss_pred CCccccchhhHHHHHHHHhcC----C--CCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLLRRD----D--LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~----~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
-.+++|.+..++.|.+.+... . .......+-|.|+|++|+|||+||+.+++. ....| +.+..+
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~----~~v~~~----- 118 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF----FSVSSS----- 118 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE----EEEEHH-----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE----EEeeHH-----
Confidence 356899999999998876321 0 001112345789999999999999999984 32223 223222
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCCh-----------hhHHhhhccccC---CCCCcE
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENY-----------DDWTNLCKPFKA---GLPGSK 280 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~-----------~~~~~l~~~l~~---~~~gs~ 280 (1151)
++. .. ............+...-..++.+|++|++..... .....+...+.. ...+..
T Consensus 119 -~l~----~~----~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 119 -DLV----SK----WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp -HHH----SC----C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred -HHh----hh----hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 111 10 0011111222222223346789999999953210 012223322221 223556
Q ss_pred EEEecCccc-ccccc-cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC-hhHHHHHH
Q 044085 281 IIVTTRNED-VSSMV-TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS-PLAAKTLG 353 (1151)
Q Consensus 281 iivTtr~~~-v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 353 (1151)
||.||.... +.... ......+.+...+.++-.+++......... ... ......|++.+.|. +-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666665442 22111 112236788888999999999877643211 111 24567788888884 44454443
No 198
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.77 E-value=7.5e-06 Score=81.57 Aligned_cols=111 Identities=15% Similarity=0.083 Sum_probs=69.5
Q ss_pred hhhhcCCCCcccEEEecCc-cccc-----cCccccCCCcccEEEcccccccc-----cchhhhcCCCCcEEecccccccc
Q 044085 548 VFHVIPRLRRLRVLSLCGY-WILQ-----LPNDIGELKHLRYLEFSRTAIEV-----LPESVSTLYNLQTLILERCYRLK 616 (1151)
Q Consensus 548 ~~~~~~~l~~Lr~L~L~~~-~i~~-----lp~~i~~l~~Lr~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~ 616 (1151)
+...+...+.|++|+|++| .+.. +...+...++|++|+|++|.|.. +...+...++|++|+|++| .+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FIS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCC
Confidence 4455667777888888777 6642 34556666778888888777762 4455666677888888777 443
Q ss_pred c-----cccccccCCccCeeec--CCCCcccc----CcccccCccCCCccCeeE
Q 044085 617 K-----LFPDIGNLTNLRHLKN--SHSNLFEE----MPLRIGKLTSLRTLAKFA 659 (1151)
Q Consensus 617 ~-----lp~~~~~L~~L~~L~l--~~~~~~~~----~p~~i~~L~~L~~L~~~~ 659 (1151)
. +...+...+.|++|++ ++|.+... +...+...++|+.|++..
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~ 160 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF 160 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccC
Confidence 3 4455666777888888 66664322 222334445666665443
No 199
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=5.9e-06 Score=86.39 Aligned_cols=80 Identities=20% Similarity=0.197 Sum_probs=46.7
Q ss_pred cCCCcccEEEccccccccc---chhhhcCCCCcEEeccccccccccccccccCC--ccCeeecCCCCccccCcc------
Q 044085 576 GELKHLRYLEFSRTAIEVL---PESVSTLYNLQTLILERCYRLKKLFPDIGNLT--NLRHLKNSHSNLFEEMPL------ 644 (1151)
Q Consensus 576 ~~l~~Lr~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~~~~L~--~L~~L~l~~~~~~~~~p~------ 644 (1151)
.++++|++|+|++|.|+.+ |..+..+++|++|+|++| .+..+ ..+..+. +|++|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3466677777777666644 344566777777777766 44444 2233333 677777777775544441
Q ss_pred -cccCccCCCccCe
Q 044085 645 -RIGKLTSLRTLAK 657 (1151)
Q Consensus 645 -~i~~L~~L~~L~~ 657 (1151)
.+..+++|+.|+.
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 2455666666653
No 200
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.74 E-value=0.00021 Score=78.59 Aligned_cols=171 Identities=17% Similarity=0.144 Sum_probs=92.9
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCC
Q 044085 151 KEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVD 230 (1151)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~ 230 (1151)
...+..++.... .....+.|+|++|+||||||+.+++..... . ...++++.. ++...+...+...
T Consensus 23 ~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~--~~~~~i~~~------~~~~~~~~~~~~~-- 87 (324)
T 1l8q_A 23 YEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G--YRVIYSSAD------DFAQAMVEHLKKG-- 87 (324)
T ss_dssp HHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T--CCEEEEEHH------HHHHHHHHHHHHT--
T ss_pred HHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C--CEEEEEEHH------HHHHHHHHHHHcC--
Confidence 344555554332 134468899999999999999999843211 1 234555432 3333443333210
Q ss_pred CcchHHHHHHHHHHhcCCceEEEEeCCCCCCh--hhHHhhhccccC-CCCCcEEEEecCccc-----cccccc---CCCc
Q 044085 231 VNDLNLLQLQLENQLKNKKFLLVLDDMWTENY--DDWTNLCKPFKA-GLPGSKIIVTTRNED-----VSSMVT---TPSA 299 (1151)
Q Consensus 231 ~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~--~~~~~l~~~l~~-~~~gs~iivTtr~~~-----v~~~~~---~~~~ 299 (1151)
..+ .+...+. +.-+|++||+..... ...+.+...+.. ...|..||+||.... +...+. ....
T Consensus 88 --~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~ 160 (324)
T 1l8q_A 88 --TIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGI 160 (324)
T ss_dssp --CHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSE
T ss_pred --cHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCce
Confidence 111 1222222 367999999954321 222334333321 123567887775431 111111 1112
Q ss_pred eeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHH
Q 044085 300 AYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAA 349 (1151)
Q Consensus 300 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 349 (1151)
.+.+++ +.++..+++...+.... ...+ .+....|++.+ |..-.+
T Consensus 161 ~i~l~~-~~~e~~~il~~~~~~~~-~~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 161 LVEIEL-DNKTRFKIIKEKLKEFN-LELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp EEECCC-CHHHHHHHHHHHHHHTT-CCCC---HHHHHHHHHHC-SSHHHH
T ss_pred EEEeCC-CHHHHHHHHHHHHHhcC-CCCC---HHHHHHHHHhC-CCHHHH
Confidence 689999 99999999988764322 1222 36677888888 776543
No 201
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.70 E-value=1.4e-05 Score=76.96 Aligned_cols=81 Identities=12% Similarity=0.212 Sum_probs=46.8
Q ss_pred CccEEEEcCCCCcccCccccCCCCccceeeecCCCCCcc-CCCCCCC----CCCccEEEecCCC-ccccccccCCCCCCC
Q 044085 964 NLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRIAS-IPEEVGF----PPNITELHIEGPN-ICKLFFDLGFHNLTS 1037 (1151)
Q Consensus 964 ~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~----l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~ 1037 (1151)
.|+.|++++|.+...--..+..+++|++|+|++|...+. --..+.. +++|++|+|++|. |++.... .+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCC
Confidence 577777777775543334456778888888888864321 1111222 2467888888876 7654332 2344555
Q ss_pred cceEEecc
Q 044085 1038 VRDLFIKD 1045 (1151)
Q Consensus 1038 L~~L~l~~ 1045 (1151)
|+.|+|++
T Consensus 141 L~~L~L~~ 148 (176)
T 3e4g_A 141 LKYLFLSD 148 (176)
T ss_dssp CCEEEEES
T ss_pred CCEEECCC
Confidence 55555555
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=4.3e-05 Score=77.51 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC
Q 044085 149 KDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS 228 (1151)
Q Consensus 149 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~ 228 (1151)
...+.+.+++..... ......+.|+|++|+|||+||+.+++.. .... ..++|++++ ++...+......
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~-~~~~~~~~~------~~~~~~~~~~~~- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRN-VSSLIVYVP------ELFRELKHSLQD- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTT-CCEEEEEHH------HHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcC-CeEEEEEhH------HHHHHHHHHhcc-
Confidence 345566666655421 1112578899999999999999999843 3333 345666543 333333332211
Q ss_pred CCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHh--hhc-cccCC-CCCcEEEEecCc
Q 044085 229 VDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTN--LCK-PFKAG-LPGSKIIVTTRN 287 (1151)
Q Consensus 229 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~--l~~-~l~~~-~~gs~iivTtr~ 287 (1151)
.........+. . .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ---~~~~~~~~~~~----~-~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ---QTMNEKLDYIK----K-VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ---CCCHHHHHHHH----H-SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ---chHHHHHHHhc----C-CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 11222222222 2 2499999997643333332 221 22211 235578888864
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.69 E-value=0.00083 Score=72.75 Aligned_cols=187 Identities=13% Similarity=0.063 Sum_probs=99.0
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDL------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
.+++|.+..++.+.+++..... ......+.+.|+|++|+||||+|+.+++.. ...| +.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~~----~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SATF----LNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCEE----EEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCe----EEeeHHHHhh--
Confidence 5689999999999887743100 000123578899999999999999999832 2222 3344332211
Q ss_pred HHHHHHHHHhcCCCCCcchHHHH-HHHHHHhcCCceEEEEeCCCCCC-----------hhhHHhhhccc---cCC--CCC
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQ-LQLENQLKNKKFLLVLDDMWTEN-----------YDDWTNLCKPF---KAG--LPG 278 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~-~~l~~~l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l---~~~--~~g 278 (1151)
.. ....+... ..+......++.+|++|++..-. ......+...+ +.. ..+
T Consensus 93 ------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 ------------KY-VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp ------------SS-CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred ------------cc-cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 01111212 22222334577899999994310 01111222211 111 123
Q ss_pred cEEEEecCccc-ccccc-cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh-HHHHHH
Q 044085 279 SKIIVTTRNED-VSSMV-TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL-AAKTLG 353 (1151)
Q Consensus 279 s~iivTtr~~~-v~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 353 (1151)
..||.||.... +.... ......+.+...+.++..+++...+..... ... .+....+++.+.|.+- ++..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLD---TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666776543 22111 111226777777888888888776532211 111 2556778888988875 444443
No 204
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.68 E-value=6e-05 Score=75.31 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++||+.+++.+.+++.... .+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999996632 345689999999999999999884
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.67 E-value=0.0011 Score=71.82 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=97.8
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDL-------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
.+++|.+..+++|.+++...-. -+-...+.|.|+|++|+|||+||+.+++. ....| +.++ .
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~~------i~v~----~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF------ISIK----G 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCEE------EEEC----H
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCCE------EEEE----h
Confidence 4689999988888887753100 00113357899999999999999999983 32222 2332 2
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC--------------hhhHHhhhccccC--CCCC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN--------------YDDWTNLCKPFKA--GLPG 278 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------------~~~~~~l~~~l~~--~~~g 278 (1151)
.++.. ...... .......+.......+.+|++|++..-. ......+...+.. ...+
T Consensus 83 ~~l~~----~~~g~~----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 83 PELLT----MWFGES----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHHH----HHHTTC----TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHHh----hhcCch----HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 22222 221111 1112233333344678999999994210 0112333333321 1235
Q ss_pred cEEEEecCccc-ccccc-c--CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh
Q 044085 279 SKIIVTTRNED-VSSMV-T--TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL 347 (1151)
Q Consensus 279 s~iivTtr~~~-v~~~~-~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 347 (1151)
..||.||...+ +.... . .....+.+...+.++-.+++........ .....++ ..+++.+.|.|=
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchH----HHHHHHcCCCCH
Confidence 67777776553 22222 1 1223788999999988888877653221 1112222 345556666653
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.67 E-value=0.00049 Score=79.20 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=101.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
.+++|.+..+++|.+++...... +....+-|.|+|++|+|||++|+.+++. ....| +.++.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f----v~vn~~~---- 273 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF----FLINGPE---- 273 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE----EEEEHHH----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE----EEEEchH----
Confidence 46899999999998887542000 0112346889999999999999999883 22222 3333211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCC--------CC---hhhHHhhhccccC--CCCCcEE
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWT--------EN---YDDWTNLCKPFKA--GLPGSKI 281 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~--------~~---~~~~~~l~~~l~~--~~~gs~i 281 (1151)
+ . ..............+.....+++.+|+||++.. .. ......+...+.. ...+.+|
T Consensus 274 --l----~----~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 --I----M----SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp --H----H----TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred --h----h----hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1 1 111111222233344444557788999999921 01 0122333333332 1234566
Q ss_pred EEecCccc-ccccccC---CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC-hhHHHHH
Q 044085 282 IVTTRNED-VSSMVTT---PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS-PLAAKTL 352 (1151)
Q Consensus 282 ivTtr~~~-v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 352 (1151)
|.||.... +...... ....+.+...+.++-.+++...+..... ....+ ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 66666542 3322222 2236889999999999999887633211 22222 24566667764 4344433
No 207
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.65 E-value=0.00014 Score=83.86 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=79.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCC----Cc-eEEEEeCCCCCHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFP----DF-RAWAYVSEDFDAVG 216 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~----~~-~~wv~vs~~~~~~~ 216 (1151)
+.+|||+.+++.+++.+.... ..-+.++|++|+|||++|+.+++... ....| +. .+.+..+.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~-~~~~p~~l~~~~~~~l~~~~------ 246 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQII-NNEVPEILRDKRVMTLDMGT------ 246 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHH-SSCSCTTTSSCCEECC----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHH-hCCCChhhcCCeEEEeeCCc------
Confidence 469999999999999997643 12457999999999999999998421 11111 11 12222220
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc------c
Q 044085 217 ITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED------V 290 (1151)
Q Consensus 217 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~------v 290 (1151)
...+ ...... ...+...-..++.++++|. . .+....+...+..+ .-++|.+|.... +
T Consensus 247 -------~~~g-~~e~~~---~~~~~~~~~~~~~iLfiD~--~--~~a~~~L~~~L~~g--~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 247 -------KYRG-EFEDRL---KKVMDEIRQAGNIILFIDA--A--IDASNILKPSLARG--ELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp --------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTSS--SCEEEEECCTTTTHHHHTT
T ss_pred -------cccc-hHHHHH---HHHHHHHHhcCCeEEEEeC--c--hhHHHHHHHhhcCC--CEEEEecCCHHHHHHHhhc
Confidence 0000 001111 2222223345688999991 1 12223344444322 356666655443 2
Q ss_pred cccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 291 SSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 291 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
.......-..+.+...+.++..+++...+
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11111111278999999999999998754
No 208
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.63 E-value=0.0013 Score=72.27 Aligned_cols=179 Identities=21% Similarity=0.204 Sum_probs=97.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
..++|.+..++.+...+..... .+.....+.++|+.|+||||||+.+++. ....| . ..+.....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~-----~-~~sg~~~~------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNI-----H-VTSGPVLV------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCE-----E-EEETTTCC-------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE-----E-EEechHhc-------
Confidence 4578888877777766653210 0123357899999999999999999983 32222 1 11211100
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCC------------------CCcEE-E
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGL------------------PGSKI-I 282 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~------------------~gs~i-i 282 (1151)
...+... +...+ .++-++++|++..-.....+.+...+.... +...+ -
T Consensus 89 -----------~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~ 155 (334)
T 1in4_A 89 -----------KQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG 155 (334)
T ss_dssp -----------SHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEE
T ss_pred -----------CHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE
Confidence 0011111 11112 234577888875433333333332221110 01122 2
Q ss_pred EecCcccccccccCC-CceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 283 VTTRNEDVSSMVTTP-SAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 283 vTtr~~~v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
.|++...+....... .....+.+.+.++..+++.+.+-... ... -.+.+..|++++.|.|-.+..+.
T Consensus 156 at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~---~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 156 ATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEI---EDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCB---CHHHHHHHHHTSTTCHHHHHHHH
T ss_pred ecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCc---CHHHHHHHHHhcCCChHHHHHHH
Confidence 355544443322221 12578999999999999988763211 111 23678999999999997655443
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=3.1e-05 Score=80.90 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=65.0
Q ss_pred cCCCCcccEEEecCccccccC---ccccCCCcccEEEcccccccccchhhhcCC--CCcEEecccccccccccc------
Q 044085 552 IPRLRRLRVLSLCGYWILQLP---NDIGELKHLRYLEFSRTAIEVLPESVSTLY--NLQTLILERCYRLKKLFP------ 620 (1151)
Q Consensus 552 ~~~l~~Lr~L~L~~~~i~~lp---~~i~~l~~Lr~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp~------ 620 (1151)
...++.|++|+|++|.++.++ ..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|......|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 357899999999999988764 5667999999999999999987 3455555 999999999954444442
Q ss_pred -ccccCCccCeeec
Q 044085 621 -DIGNLTNLRHLKN 633 (1151)
Q Consensus 621 -~~~~L~~L~~L~l 633 (1151)
.+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 3678999999973
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.61 E-value=0.0011 Score=75.94 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=100.6
Q ss_pred CCccccchhhHHHHHHHHhcC----CC--CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLLRRD----DL--NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
-++++|.+..++.|.+.+... .. ......+.|.++|++|+|||+||+.+++.. ...-++.++..
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-------~~~~~~~v~~~--- 202 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-------NNSTFFSISSS--- 202 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-------CSSEEEEECCC---
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-------CCCCEEEEeHH---
Confidence 357899999999998877321 00 001233578899999999999999999832 11223344322
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC-----------hhhHHhhhccccC---CCCCcE
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN-----------YDDWTNLCKPFKA---GLPGSK 280 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l~~---~~~gs~ 280 (1151)
++... .... ....... .+...-..++.+|++|++..-. ......+...+.. ...+..
T Consensus 203 -~l~~~----~~g~-~~~~~~~---~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 203 -DLVSK----WLGE-SEKLVKN---LFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHH---HHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred -HHHhh----hcch-HHHHHHH---HHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11111 1100 1111111 1222224578899999995320 0112223333322 234566
Q ss_pred EEEecCcccc-cccc-cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC-hhHHHHHH
Q 044085 281 IIVTTRNEDV-SSMV-TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS-PLAAKTLG 353 (1151)
Q Consensus 281 iivTtr~~~v-~~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 353 (1151)
||.||..... .... ......+.+...+.++..++|......... ... ......|++.+.|. +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SLT---EADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-ECC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 7767765432 2111 112226778888888888888877632211 111 24566788888884 44444443
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.60 E-value=3.9e-05 Score=76.36 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=85.8
Q ss_pred ccCCCCccEEEccCC-CCcccccchhhhhhhhcCCCCcccEEEecCccccc-----cCccccCCCcccEEEcccccccc-
Q 044085 521 LHEVEYLRTLLALPV-STRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQ-----LPNDIGELKHLRYLEFSRTAIEV- 593 (1151)
Q Consensus 521 ~~~~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~Lr~L~Ls~n~i~~- 593 (1151)
+...+.|++|.+..+ .... .....+...+...+.|++|+|++|.+.. +...+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~---~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPV---PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCH---HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCH---HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 346778888888765 3211 1123345667788999999999999864 44566677899999999999984
Q ss_pred ----cchhhhcCCCCcEEec--cccccccc-----cccccccCCccCeeecCCCCc
Q 044085 594 ----LPESVSTLYNLQTLIL--ERCYRLKK-----LFPDIGNLTNLRHLKNSHSNL 638 (1151)
Q Consensus 594 ----lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~ 638 (1151)
+...+...++|++|+| ++| .++. +...+...+.|++|++++|.+
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 5677888899999999 777 4443 445567779999999999984
No 212
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.60 E-value=0.0013 Score=74.06 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=99.0
Q ss_pred CCccccchhhHHHHHHHHhcCCC------CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDL------NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
-.+++|.+..++.|.+++..... ......+-|.|+|++|+|||++|+.+++. ....| +.+..+.-...
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~----~~v~~~~l~~~ 187 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF----FNISAASLTSK 187 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE----EEECSCCC---
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE----EEeeHHHhhcc
Confidence 35799999999999988732100 00012357889999999999999999873 22222 33333221110
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-----------ChhhHHhhhccccC----CCCCc
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-----------NYDDWTNLCKPFKA----GLPGS 279 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~~~~~~l~~~l~~----~~~gs 279 (1151)
. ...........+...-...+.+|+||++... .......+...+.. .....
T Consensus 188 --~------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 --Y------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred --c------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 0001111122222222345689999999421 01111222222221 11234
Q ss_pred EEEEecCcc-ccccccc-CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChh-HHHHH
Q 044085 280 KIIVTTRNE-DVSSMVT-TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSPL-AAKTL 352 (1151)
Q Consensus 280 ~iivTtr~~-~v~~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 352 (1151)
.||.||... .+..... .....+.+...+.++..+++...+..... .. ..+....|++.+.|..- ++..+
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l---~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PL---TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 566566543 2222221 11226788889999999998877633211 11 12566788888988654 55444
No 213
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0012 Score=72.58 Aligned_cols=180 Identities=16% Similarity=0.098 Sum_probs=97.8
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
+++.|.++.+++|.+.+.-.-.. +-..++-|.++|++|.|||.||+++++ +....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~--e~~~~f----~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH--HTDCKF----IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH--HHTCEE----EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH--hhCCCc----eEEEhHHhhc-
Confidence 56889999888887765421000 112345688999999999999999999 433334 3344332211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC--------hh------hHHhhhccccC--CCCC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN--------YD------DWTNLCKPFKA--GLPG 278 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------~~------~~~~l~~~l~~--~~~g 278 (1151)
....+....+.......-...+.+|++|++..-- .. ...++...+.. ...+
T Consensus 221 -------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 0001111111122222224678999999995310 00 11222222222 2234
Q ss_pred cEEEEecCcccccc-cc---cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 279 SKIIVTTRNEDVSS-MV---TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 279 s~iivTtr~~~v~~-~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
-.||.||...+..+ .+ +.....+.+..-+.++-.++|+.+.-+. ......+ ..+|++++.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM-NLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-BCCSSCC----HHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHCCCCC
Confidence 56677776654422 22 1223378888888888888887765332 1122222 355777887754
No 214
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.51 E-value=6e-05 Score=71.30 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=63.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVIL 222 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~ 222 (1151)
.++|++..++++.+.+..... ...-|.|+|..|+|||++|+.+++... . ++.+.-. + +....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~~~---~------~~~~~~~-~---~~~~~- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKNGT---P------WVSPARV-E---YLIDM- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCTTS---C------EECCSST-T---HHHHC-
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC---C------eEEechh-h---CChHh-
Confidence 578999999888888764221 112367999999999999999988322 2 2222211 1 11010
Q ss_pred HHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC-CCCcEEEEecCc
Q 044085 223 QAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG-LPGSKIIVTTRN 287 (1151)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-~~gs~iivTtr~ 287 (1151)
. ..+.+ ..+.-.+++|++..........+...+..+ ..+.+||+||..
T Consensus 67 --------------~-~~~~~--~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 --------------P-MELLQ--KAEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------------H-HHHHH--HTTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------------h-hhHHH--hCCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0 11111 123457899999776666666666555543 245778887763
No 215
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.51 E-value=0.00041 Score=79.94 Aligned_cols=98 Identities=9% Similarity=0.063 Sum_probs=61.3
Q ss_pred EEEEeCCCCCChhhHHhhhccccCCCCCcEEE-Ee---------cC----cccccccccCCCceeecCCCChhhhHHHHH
Q 044085 251 LLVLDDMWTENYDDWTNLCKPFKAGLPGSKII-VT---------TR----NEDVSSMVTTPSAAYSLENLLRDDCLSIFV 316 (1151)
Q Consensus 251 LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~ii-vT---------tr----~~~v~~~~~~~~~~~~l~~L~~~~~~~lf~ 316 (1151)
++++|++...+...++.+...+...... .+| .| |. ...+..........+.+.+++.++..+++.
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 8999999776777788888777765444 344 45 32 111111122222368999999999999998
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHc-CCChhHHHHHH
Q 044085 317 RHSLGRTDFSAHQYLSEIGEKIVDKC-NGSPLAAKTLG 353 (1151)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~c-~g~Plai~~~~ 353 (1151)
..+.... .... .+....|++.+ +|.|..+..+.
T Consensus 377 ~~~~~~~-~~~~---~~~~~~i~~~a~~g~~r~a~~ll 410 (456)
T 2c9o_A 377 IRAQTEG-INIS---EEALNHLGEIGTKTTLRYSVQLL 410 (456)
T ss_dssp HHHHHHT-CCBC---HHHHHHHHHHHHHSCHHHHHHTH
T ss_pred HHHHHhC-CCCC---HHHHHHHHHHccCCCHHHHHHHH
Confidence 7653111 1112 25667788888 78887655543
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.47 E-value=0.00062 Score=74.35 Aligned_cols=138 Identities=19% Similarity=0.253 Sum_probs=75.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++.. ...- ...+.+.++....... .
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~-~~~~~~~~~~~~~~~~-~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTE-EAMIRIDMTEYMEKHA-V 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCG-GGEEEEEGGGCCSTTH-H
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCC-cceEEeeccccccccc-H
Confidence 3578999998888888765321 011223578999999999999999999843 2211 2245555554332211 1
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhc-CCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecC
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLK-NKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTR 286 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 286 (1151)
..++............. .+...+. ...-++++|++.......+..+...+..+. ....||.||.
T Consensus 93 ~~l~g~~~~~~~~~~~~----~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGG----QLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp HHHHCCCTTSTTTTTCC----HHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred HHhcCCCCccccccccc----hHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 11111000000111111 1222222 345799999997666666666655544321 2344777776
Q ss_pred c
Q 044085 287 N 287 (1151)
Q Consensus 287 ~ 287 (1151)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 217
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.44 E-value=0.00096 Score=71.70 Aligned_cols=149 Identities=10% Similarity=0.004 Sum_probs=93.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh-ccCCCceEEEEeCC-CCCHHHHHHHHHH
Q 044085 146 GREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE-EHFPDFRAWAYVSE-DFDAVGITKVILQ 223 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~f~~~~~wv~vs~-~~~~~~~~~~i~~ 223 (1151)
|-++.++.|.+.+... +.....++|+.|+||||+|+.+.+..... ...++ ..++..++ ...+.+ .+++++
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHH
Confidence 4455667777777553 24688899999999999999998742111 12223 34444332 222222 233444
Q ss_pred HhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCc-ccccccccCCCceee
Q 044085 224 AAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRN-EDVSSMVTTPSAAYS 302 (1151)
Q Consensus 224 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~-~~v~~~~~~~~~~~~ 302 (1151)
.+.... ..+++-++|+|++...+....+.+...+....+.+.+|++|.+ ..+....... .++
T Consensus 73 ~~~~~p---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~ 135 (305)
T 2gno_A 73 FLNYSP---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFR 135 (305)
T ss_dssp HHTSCC---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEE
T ss_pred HHhhcc---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEe
Confidence 332110 0245679999999777777788888777766667777766644 3444444443 899
Q ss_pred cCCCChhhhHHHHHHhh
Q 044085 303 LENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 303 l~~L~~~~~~~lf~~~~ 319 (1151)
++++++++..+.+.+.+
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999887765
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.44 E-value=0.00018 Score=89.98 Aligned_cols=156 Identities=14% Similarity=0.169 Sum_probs=79.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhh---ccCC-CceEEEEeCCCCCHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVE---EHFP-DFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~-~~~~wv~vs~~~~~~~~ 217 (1151)
+.++||+++++++++.+.... ..-+.++|.+|+||||+|+.+++...-. .... ...+++.++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~---- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA---- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc----
Confidence 568999999999999997643 2346899999999999999999843110 0110 1223333221100
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHh-c-CCceEEEEeCCCCCCh-----hhHH---hhhccccCCCCCcEEEEecCc
Q 044085 218 TKVILQAAVGSVDVNDLNLLQLQLENQL-K-NKKFLLVLDDMWTENY-----DDWT---NLCKPFKAGLPGSKIIVTTRN 287 (1151)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdvw~~~~-----~~~~---~l~~~l~~~~~gs~iivTtr~ 287 (1151)
......+.+.....+...+ . +++.+|++|++..-.. ..|+ .+...+..+ +-.+|.+|..
T Consensus 240 ---------g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~--~i~~I~at~~ 308 (854)
T 1qvr_A 240 ---------GAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG--ELRLIGATTL 308 (854)
T ss_dssp ---------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTT--CCCEEEEECH
T ss_pred ---------cCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC--CeEEEEecCc
Confidence 0000112222222222222 2 3678999999953210 0121 122222222 3345544433
Q ss_pred ccc-----cccccCCCceeecCCCChhhhHHHHHHh
Q 044085 288 EDV-----SSMVTTPSAAYSLENLLRDDCLSIFVRH 318 (1151)
Q Consensus 288 ~~v-----~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 318 (1151)
... .......-..+.+.+++.++..+++...
T Consensus 309 ~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 221 2222222226899999999999888643
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.0026 Score=71.16 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=98.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-+++.|.++.+++|.+.+...-.. +-..++-|.++|++|.|||+||+++++. ....| +.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~----~~v~~s~l~s 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF----IFSPASGIVD 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE----EEEEGGGTCC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE----EEEehhhhcc
Confidence 457889998888887765431000 1233567889999999999999999994 33333 3344433211
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC-----------Ch---hhHHhhhccccC--CCC
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE-----------NY---DDWTNLCKPFKA--GLP 277 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~-----------~~---~~~~~l~~~l~~--~~~ 277 (1151)
.........+.......-...+.+|++|++..- +. .....+...+.. ...
T Consensus 254 --------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 --------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp --------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred --------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 000111111112222223467899999999531 00 012223333322 224
Q ss_pred CcEEEEecCcccccc-ccc-C--CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 278 GSKIIVTTRNEDVSS-MVT-T--PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 278 gs~iivTtr~~~v~~-~~~-~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
+..||.||...+..+ .+. . ....+.+..-+.++-.++|+.+.-+... ....+ ...+++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 567777776654432 221 1 1236778777777778888776543221 12222 245677777754
No 220
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0022 Score=71.35 Aligned_cols=180 Identities=17% Similarity=0.100 Sum_probs=97.2
Q ss_pred CccccchhhHHHHHHHHhcCC---C----CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDD---L----NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~---~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
+++.|.++.+++|.+.+.-.- + -+-...+-|.++|++|+|||+||+++++ +....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f----i~vs~s~L~s- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF----IRVIGSELVQ- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE----EEEEGGGGCC-
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe----EEEEhHHhhc-
Confidence 478899998888877643200 0 0113456788999999999999999999 433333 3344332111
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC--------h--h----hHHhhhccccC--CCCC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN--------Y--D----DWTNLCKPFKA--GLPG 278 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------~--~----~~~~l~~~l~~--~~~g 278 (1151)
.........+.......-...+.+|++|++..-- . . ....+...+.. ...+
T Consensus 282 -------------k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 -------------KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp -------------CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred -------------ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 0001111111222222334678999999995310 0 0 11112222222 1234
Q ss_pred cEEEEecCcccccc-cc---cCCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 279 SKIIVTTRNEDVSS-MV---TTPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 279 s~iivTtr~~~v~~-~~---~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
..||.||...+..+ .+ +.....+.+...+.++-.++|+.+.-... ....-+ ...|++.|.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 45677776544322 22 12233788888888888888877663321 122222 345777888753
No 221
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.35 E-value=0.0004 Score=75.04 Aligned_cols=131 Identities=11% Similarity=0.029 Sum_probs=70.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
+.++|+...+.++.+.+..... ...-|.|+|..|+|||++|+.+++...- .. ...+.++++.-. ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~~~~-~~--~~~v~v~~~~~~--~~l~~~- 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHACSAR-SD--RPLVTLNCAALN--ESLLES- 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHHSSC-SS--SCCCEEECSSCC--HHHHHH-
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHhCcc-cC--CCeEEEeCCCCC--hHHHHH-
Confidence 4588999999998888766432 1234679999999999999999884211 11 122344444322 222222
Q ss_pred HHHhcCCCC---CcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC-----------CCCcEEEEecCc
Q 044085 222 LQAAVGSVD---VNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG-----------LPGSKIIVTTRN 287 (1151)
Q Consensus 222 ~~~~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 287 (1151)
.+.+... ..........+.. ...-.|+||++..........+...+... ....+||.||..
T Consensus 72 --~lfg~~~g~~tg~~~~~~g~~~~---a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 72 --ELFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp --HHTCCCSSCCC---CCCCCHHHH---HTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred --HhcCccccccCchhhhhcCHHHh---cCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 2221100 0000000011111 12357999999776655555555554432 134678887765
No 222
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.34 E-value=0.00041 Score=73.65 Aligned_cols=133 Identities=13% Similarity=0.050 Sum_probs=67.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
+.++|.+..+.++.+.+..... ....|.|+|..|+|||++|+.+++.... .. ...+.++++.- .. +....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~~~~-~~--~~~~~v~~~~~-~~-~~~~~- 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYLSSR-WQ--GPFISLNCAAL-NE-NLLDS- 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHTSTT-TT--SCEEEEEGGGS-CH-HHHHH-
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHhcCc-cC--CCeEEEecCCC-Ch-hHHHH-
Confidence 4578999999888877754321 1235779999999999999999984321 11 12344554433 22 22221
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCCChhhHHhhhccccCC-----------CCCcEEEEecCc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTENYDDWTNLCKPFKAG-----------LPGSKIIVTTRN 287 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 287 (1151)
.+.+.... ............+ ....-+|+||++..........+...+..+ ..+.+||.||..
T Consensus 76 --~l~g~~~~-~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 76 --ELFGHEAG-AFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp --HHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred --HhcCCccc-ccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 11111000 0000000000011 123469999999765555555555444322 134678888765
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.34 E-value=0.0032 Score=66.33 Aligned_cols=185 Identities=15% Similarity=0.088 Sum_probs=92.4
Q ss_pred CccccchhhHHHHHHHHh---cCCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLR---RDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
++++|.+..++++.+.+. .... -+....+-+.|+|++|+||||+|+.+++.. ... .+.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~----~~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVP----FFTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCC----EEEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCC----EEEEeHHHHHH--
Confidence 568999988777665442 2110 001122347899999999999999999842 212 23332221110
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC---C-------h----hhHHhhhccccC--CCCCc
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE---N-------Y----DDWTNLCKPFKA--GLPGS 279 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~---~-------~----~~~~~l~~~l~~--~~~gs 279 (1151)
.............+.......+.++++|++..- . . .....+...+.. ...+.
T Consensus 84 ------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 ------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp ------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred ------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 000111222223333333456789999998210 0 0 111222222221 12345
Q ss_pred EEEEecCccc-ccccccC---CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCC-ChhHHHH
Q 044085 280 KIIVTTRNED-VSSMVTT---PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNG-SPLAAKT 351 (1151)
Q Consensus 280 ~iivTtr~~~-v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~ 351 (1151)
.||.||...+ +...... ....+.+...+.++-.+++....-.. ...... ....++..+.| .+--+..
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~~----~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDI----DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTC----CHHHHHHTCTTCCHHHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCccc----cHHHHHHHcCCCCHHHHHH
Confidence 6777776543 3222211 12367788878888778777655221 111111 13446677777 5544443
No 224
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0017 Score=72.53 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=94.6
Q ss_pred CCccccchhhHHHHHHHHhc----CCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRR----DDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-+++.|.++.+++|.+.+.. .+. -+-..++-|.++|++|.|||.||+++++ .....| +.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~--e~~~~f----~~v~~s~l~~ 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA--QTNATF----LKLAAPQLVQ 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH--HHTCEE----EEEEGGGGCS
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH--HhCCCE----EEEehhhhhh
Confidence 35788999998888776432 100 0123456788999999999999999999 433333 3344332111
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHH-HHHhcCCceEEEEeCCCC------CCh----hh----HHhhhccccC--CC
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQL-ENQLKNKKFLLVLDDMWT------ENY----DD----WTNLCKPFKA--GL 276 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdvw~------~~~----~~----~~~l~~~l~~--~~ 276 (1151)
.. ....+...+.+ ...-...+.+|++|++.. ... .. ...+...+.. ..
T Consensus 254 --------------~~-vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 254 --------------MY-IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp --------------SC-SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred --------------cc-cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 00 01111111111 122234689999999831 000 01 1122222222 12
Q ss_pred CCcEEEEecCcccccc-cccC---CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044085 277 PGSKIIVTTRNEDVSS-MVTT---PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS 345 (1151)
Q Consensus 277 ~gs~iivTtr~~~v~~-~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 345 (1151)
.+-.||.||...+..+ .+.. ....+.+...+.++-.++|+.+.-.... ...-+ ..+|++.+.|.
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 3456777777654432 2211 1236788888888878888765532211 11122 34567777775
No 225
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0015 Score=72.96 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=92.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-+++.|.++.+++|.+.+...-.. +-...+-|.++|++|+|||++|+++++. ....| +.|..++-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~----~~v~~~~l~~ 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF----IRVNGSEFVH 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE----EEEEGGGTCC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe----EEEecchhhc
Confidence 357889999988887765421000 1234566889999999999999999993 33333 3444433211
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCC---------C--Ch---hhHHhhhccccC--CCC
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWT---------E--NY---DDWTNLCKPFKA--GLP 277 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~---------~--~~---~~~~~l~~~l~~--~~~ 277 (1151)
.........+.......-...+.+|++|++.. . +. ....++...+.. ...
T Consensus 245 --------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 --------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp --------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred --------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 00011111112222222345789999999831 0 00 012222222221 224
Q ss_pred CcEEEEecCcccccc-cccC---CCceeecCCCChhhh-HHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044085 278 GSKIIVTTRNEDVSS-MVTT---PSAAYSLENLLRDDC-LSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS 345 (1151)
Q Consensus 278 gs~iivTtr~~~v~~-~~~~---~~~~~~l~~L~~~~~-~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 345 (1151)
+-.||.||...+..+ .... ....+.+..+++.++ .++|..+.-+.. .....+ ...+++++.|.
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~d----l~~lA~~t~G~ 378 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEAD----LDSLIIRNDSL 378 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCC----HHHHHHHTTTC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHHCCCC
Confidence 556777776554322 2211 122566766655544 455655543221 112222 34566777775
No 226
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.21 E-value=0.00077 Score=83.30 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=80.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh---hccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV---EEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
+.+|||+.+++++.+.+.... ..-+.++|++|+|||++|+.+++...- .....+.. ++.+.-.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~g------- 245 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDMG------- 245 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEeccc-------
Confidence 469999999999999997643 124679999999999999999884210 00110111 1111110
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccc------ccc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNED------VSS 292 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~------v~~ 292 (1151)
... ....... +...+......++.+|++|.- . .....+...+.. ...++|.||.... +..
T Consensus 246 ----~~~-~G~~e~~---l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 246 ----TKY-RGEFEDR---LKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp ------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTCS
T ss_pred ----ccc-cchHHHH---HHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhccH
Confidence 000 0000111 222233333467889999921 1 222233333332 2456666665443 211
Q ss_pred cccCCCceeecCCCChhhhHHHHHHhh
Q 044085 293 MVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 293 ~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
.....-..+.+...+.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111111378999999999999998654
No 227
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.17 E-value=0.0055 Score=69.75 Aligned_cols=180 Identities=15% Similarity=0.091 Sum_probs=96.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
.+++|.++.++++.+.+..-..+ +....+-|.|+|++|+|||+||+.+++.. ...| +.++.++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f----~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF----FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE----EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe----eeCCHHHHHHH-
Confidence 56899998877776654321100 01122347899999999999999999833 2222 33443322110
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC--------------hhhHHhhhccccC--CCCCc
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN--------------YDDWTNLCKPFKA--GLPGS 279 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~--------------~~~~~~l~~~l~~--~~~gs 279 (1151)
............+.......+.+|++|++..-. ......+...+.. ...+.
T Consensus 89 -------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 -------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp -------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred -------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 000011122233444445678999999994310 0112333332221 12355
Q ss_pred EEEEecCcccccc-cc-c--CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 280 KIIVTTRNEDVSS-MV-T--TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 280 ~iivTtr~~~v~~-~~-~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
.||.||...+... .. . .....+.+...+.++-.+++..++.... .....+ ...|++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~-l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP-LAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC-Ccchhh----HHHHHHhcCCCc
Confidence 6777777654432 22 1 1223678888888777788876653321 111111 344778888876
No 228
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.0037 Score=68.85 Aligned_cols=179 Identities=17% Similarity=0.111 Sum_probs=94.7
Q ss_pred CCccccchhhHHHHHHHHhcC---CC----CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRD---DL----NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-+++.|.++.+++|.+.+... .+ -+-...+-|.++|++|.|||.||+++++ +....| +.+..++-.+
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~--e~~~~f----i~v~~s~l~s 254 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN--QTSATF----LRIVGSELIQ 254 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH--HHTCEE----EEEESGGGCC
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH--HhCCCE----EEEEHHHhhh
Confidence 356889998888887765321 00 0123346789999999999999999999 433333 3333332111
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHH-HHHHhcCCceEEEEeCCCCC-----------C---hhhHHhhhccccC--CC
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQ-LENQLKNKKFLLVLDDMWTE-----------N---YDDWTNLCKPFKA--GL 276 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdvw~~-----------~---~~~~~~l~~~l~~--~~ 276 (1151)
.. ....+..... ....-...+.+|++|++..- + ......+...+.. ..
T Consensus 255 --------------k~-vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 255 --------------KY-LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp --------------SS-SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred --------------cc-CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 00 1111111112 22222456899999998521 0 0111222222221 22
Q ss_pred CCcEEEEecCcccccc-cccC---CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 044085 277 PGSKIIVTTRNEDVSS-MVTT---PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGS 345 (1151)
Q Consensus 277 ~gs~iivTtr~~~v~~-~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 345 (1151)
.+..||.||...+..+ .+.. ....+.+..-+.++-.++|..+.-.. ......++ ..|++.+.|.
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCCH----HHHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCCH----HHHHHhCCCC
Confidence 3456677776654432 2221 12257777777777788887765322 11222223 4566777775
No 229
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.15 E-value=0.0014 Score=71.57 Aligned_cols=51 Identities=24% Similarity=0.290 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcC--CCC------CCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRD--DLN------SGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~--~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++|.+..++.+...+... ... .......+.|+|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999998877541 000 0012345789999999999999999984
No 230
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.12 E-value=0.0037 Score=77.38 Aligned_cols=158 Identities=21% Similarity=0.258 Sum_probs=86.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhh---hccCCCceEEE-EeCCCCCHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRV---EEHFPDFRAWA-YVSEDFDAVGI 217 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~f~~~~~wv-~vs~~~~~~~~ 217 (1151)
+.++||+.+++++++.|.... ..-+.|+|.+|+||||+|+.+++...- ...+.+..+|. ..+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 468999999999999997643 234679999999999999999884311 11111233321 11110
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCC--------ChhhHHhhhccccCCCCCcEEEEecCcc
Q 044085 218 TKVILQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTE--------NYDDWTNLCKPFKAGLPGSKIIVTTRNE 288 (1151)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~--------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 288 (1151)
..........+.....+.+.+ ..++.+|++||+..- ...+...+...+... .+.++|.+|...
T Consensus 254 -------~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 -------LAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQ 325 (758)
T ss_dssp --------CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECHH
T ss_pred -------hccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCch
Confidence 000111222333333333333 346789999999532 112222223222222 245666666543
Q ss_pred ccccc------ccCCCceeecCCCChhhhHHHHHHhh
Q 044085 289 DVSSM------VTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 289 ~v~~~------~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
..... +...-..+.+...+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 32111 11111268899999999888887543
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.11 E-value=0.00073 Score=83.52 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=88.1
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++|.+..++.+.+.+...... .......+.++|++|+|||++|+.+++.. ...- ...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~-~~~i~i~~s~~~~~~--- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDE-ESMIRIDMSEYMEKH--- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCT-TCEEEEEGGGGCSSC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCC-cceEEEechhccccc---
Confidence 46899999998888887654321 11233478999999999999999999843 1211 234455554322110
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChhhHHhhhccccCC-----------CCCcEEEEecCc
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAG-----------LPGSKIIVTTRN 287 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 287 (1151)
..........++ +...-+|+||++..........+...+..+ ....+||+||..
T Consensus 565 ------------~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ------------STSGGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------CCC---CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------ccccchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000011111111 133459999999766666666666555432 135688888873
Q ss_pred cc-------------c-cccccCCCceeecCCCChhhhHHHHHHh
Q 044085 288 ED-------------V-SSMVTTPSAAYSLENLLRDDCLSIFVRH 318 (1151)
Q Consensus 288 ~~-------------v-~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 318 (1151)
.. . ......-...+.+.++++++..+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 11 0 0011111127788888888877776554
No 232
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.04 E-value=0.00084 Score=71.42 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=80.5
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
.+++|.+..++.+.+.+..-..+ +....+-+.|+|++|+|||++|+.+++.. ...| +.+..+.-.+
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~----~~v~~~~~~~-- 82 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--HVPF----FSMGGSSFIE-- 82 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH--TCCC----CCCCSCTTTT--
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE----EEechHHHHH--
Confidence 56899998888887765420000 00112236799999999999999999843 2233 1111111100
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCCh---------------hhHHhhhccccCC---CC
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENY---------------DDWTNLCKPFKAG---LP 277 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~---------------~~~~~l~~~l~~~---~~ 277 (1151)
..... ...... ..+......++.+|++||+..-.. .....+...+... ..
T Consensus 83 --------~~~~~-~~~~~~---~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 83 --------MFVGL-GASRVR---DLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp --------SCSSS-CSSSSS---TTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred --------hhcch-HHHHHH---HHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 00000 001111 112222234678999999943110 0112233222211 12
Q ss_pred CcEEEEecCcccccc-cc-c--CCCceeecCCCChhhhHHHHHHhh
Q 044085 278 GSKIIVTTRNEDVSS-MV-T--TPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 278 gs~iivTtr~~~v~~-~~-~--~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
...||.||....... .. . .....+.+...+.++-.+++...+
T Consensus 151 ~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 151 PVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 346777777654211 11 1 112267888888888888887655
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.01 E-value=0.00047 Score=65.32 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=50.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKK 249 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 249 (1151)
..++|+|+.|+|||||++.+++..... . ...+++...+-... .+..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~-g--~~~~~~~~~~~~~~-----------------------------~~~~~~ 84 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA-G--KNAAYIDAASMPLT-----------------------------DAAFEA 84 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT-T--CCEEEEETTTSCCC-----------------------------GGGGGC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc-C--CcEEEEcHHHhhHH-----------------------------HHHhCC
Confidence 478999999999999999999854321 1 22556654432211 012345
Q ss_pred eEEEEeCCCCCChhhHHhhhccccCC-CCC-cEEEEecCc
Q 044085 250 FLLVLDDMWTENYDDWTNLCKPFKAG-LPG-SKIIVTTRN 287 (1151)
Q Consensus 250 ~LlVlDdvw~~~~~~~~~l~~~l~~~-~~g-s~iivTtr~ 287 (1151)
-++|+||+...+...-+.+...+... ..| ++||+||+.
T Consensus 85 ~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 85 EYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp SEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 68899999654333333333332211 123 358888874
No 234
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.94 E-value=0.0036 Score=68.85 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=86.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
..++|+++.++.+...+.... -+.++|++|+|||+||+.+.+ .....| ..+..+......++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~--~~~~~~----~~i~~~~~~~~~~l~g-- 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK--TMDLDF----HRIQFTPDLLPSDLIG-- 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH--HTTCCE----EEEECCTTCCHHHHHE--
T ss_pred cceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH--HhCCCe----EEEecCCCCChhhcCC--
Confidence 468899999999888886642 478999999999999999988 332222 2333333333332211
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhc-C--CceEEEEeCCCCCChhhHHhhhccccCC-----------CCCcEEEEecCc
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLK-N--KKFLLVLDDMWTENYDDWTNLCKPFKAG-----------LPGSKIIVTTRN 287 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~-~--k~~LlVlDdvw~~~~~~~~~l~~~l~~~-----------~~gs~iivTtr~ 287 (1151)
........... ... + ...++++|++..........+...+..+ .....|+.|+..
T Consensus 91 --~~~~~~~~~~~---------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 91 --TMIYNQHKGNF---------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp --EEEEETTTTEE---------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECT
T ss_pred --ceeecCCCCce---------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCC
Confidence 11000000000 001 1 1359999999766555555554443321 234566666653
Q ss_pred cc------ccccccCC-CceeecCCCChhhhHHHHHHhhc
Q 044085 288 ED------VSSMVTTP-SAAYSLENLLRDDCLSIFVRHSL 320 (1151)
Q Consensus 288 ~~------v~~~~~~~-~~~~~l~~L~~~~~~~lf~~~~~ 320 (1151)
.. +....... ...+.+...+.++-.+++.+.+.
T Consensus 160 ~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 160 VEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 32 11111111 11488999999999999888764
No 235
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.74 E-value=0.0013 Score=71.13 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEe
Q 044085 147 REKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYV 208 (1151)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~v 208 (1151)
+....+.+.+++..... .....+.|+|+.|+|||+||+.+++.... ..- ..+.++++
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~~~~-~~g-~~v~~~~~ 189 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHELSE-KKG-VSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHHHHH-HSC-CCEEEEEH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHHHHH-hcC-CcEEEEEH
Confidence 33445566667765321 11357889999999999999999984321 222 23555554
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.70 E-value=0.016 Score=69.97 Aligned_cols=181 Identities=15% Similarity=0.135 Sum_probs=97.5
Q ss_pred CCccccchhhHHHHHHHHhc----CCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRR----DDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-+++.|.++.+++|.+++.- .+. -+...++-|.++|++|+|||+||+++++. ...+| +.|..++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~----~~v~~~~--- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF----FLINGPE--- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE----EEEEHHH---
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE----EEEEhHH---
Confidence 35688999888888776532 110 02234567899999999999999999994 33333 3343221
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCC-----------hhhHHhhhccccCC--CCCcE
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTEN-----------YDDWTNLCKPFKAG--LPGSK 280 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l~~~--~~gs~ 280 (1151)
+ ...........+........+..+.+|++|++..-- .....++...+... ..+-.
T Consensus 274 -------l----~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -------I----MSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -------H----HSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -------h----hcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1 111111222223333344445678999999984210 00111222222211 12345
Q ss_pred EEEecCccc-ccccccC---CCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 281 IIVTTRNED-VSSMVTT---PSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 281 iivTtr~~~-v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
||.||...+ +-..+.. ....+.+...+.++-.++|..+.-+.. .....+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 566665543 3333322 223688888888888888876653211 122222 345777888764
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.69 E-value=0.0033 Score=73.79 Aligned_cols=166 Identities=16% Similarity=0.137 Sum_probs=77.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVI 221 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i 221 (1151)
.+++|.+.-.+.+.+.+.-..........++.++|++|+||||||+.++.. ....| .-+.++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~----~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKF----VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEE----EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCe----EEEEecccchhhhhhhHH
Confidence 357788877776655433211001113458999999999999999999983 33333 223333322221111111
Q ss_pred HHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCCChh----hHHhhhccccCCC---------------CCcEEE
Q 044085 222 LQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTENYD----DWTNLCKPFKAGL---------------PGSKII 282 (1151)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~~~~----~~~~l~~~l~~~~---------------~gs~ii 282 (1151)
...++ .........+.. .....-++++|++...... ....+...+.... ....||
T Consensus 155 ~~~ig-----~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 155 RTYVG-----AMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHHhc-----cCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11111 000011111111 1223348889999653322 1233443332211 345677
Q ss_pred EecCcccc-cccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 283 VTTRNEDV-SSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 283 vTtr~~~v-~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
.||..... .......-..+.+.+++.++-.+++.++.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 77765432 11111111267888888888877776643
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.61 E-value=0.0017 Score=68.62 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=45.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEe--CCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYV--SEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLENQLK 246 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~v--s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~ 246 (1151)
.+++.|+|++|+||||||.+++.. . . ..++|++. .+..+. ...+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~-G--~~VlyIs~~~eE~v~~---------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---L-G--GKDKYATVRFGEPLSG---------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---H-H--TTSCCEEEEBSCSSTT---------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---C-C--CCEEEEEecchhhhhh---------------hhcCHHHHHHHHHHHHh
Confidence 357789999999999999999874 1 1 34566777 332111 01345555556666666
Q ss_pred CCceEEEEeCCC
Q 044085 247 NKKFLLVLDDMW 258 (1151)
Q Consensus 247 ~k~~LlVlDdvw 258 (1151)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 656 99999994
No 239
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.50 E-value=0.0073 Score=64.76 Aligned_cols=26 Identities=31% Similarity=0.388 Sum_probs=22.5
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999994
No 240
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.49 E-value=0.004 Score=77.06 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=72.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGIT 218 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~ 218 (1151)
..++|.+..++.+...+.....+ .......+.++|++|+|||++|+.+.+.. . ...+.+..+.-.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~----~~~~~i~~s~~~~~~~-- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G----IELLRFDMSEYMERHT-- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T----CEEEEEEGGGCSSSSC--
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c----CCEEEEechhhcchhh--
Confidence 45889999998888877543210 11233578999999999999999999833 2 2234444443221100
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHHhc-CCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecC
Q 044085 219 KVILQAAVGSVDVNDLNLLQLQLENQLK-NKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTR 286 (1151)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr 286 (1151)
+...++........+ ....+...+. ...-+++||++..........+...+..+. ....||.||.
T Consensus 530 --~~~l~g~~~g~~g~~-~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp --CSSSCCCCSCSHHHH-HTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred --HhhhcCCCCCCcCcc-ccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 000001000000000 0111222222 346799999997666666666655554321 2345777775
Q ss_pred c
Q 044085 287 N 287 (1151)
Q Consensus 287 ~ 287 (1151)
.
T Consensus 607 ~ 607 (758)
T 1r6b_X 607 A 607 (758)
T ss_dssp S
T ss_pred c
Confidence 4
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.42 E-value=0.012 Score=60.17 Aligned_cols=83 Identities=17% Similarity=0.119 Sum_probs=50.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHh-----------c--CCCCCcchH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAA-----------V--GSVDVNDLN 235 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~-----------~--~~~~~~~~~ 235 (1151)
-.++.|+|.+|+||||||..++. . .- ..++|++....++...+.. +.... . ......+..
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~-~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SG-KKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HC-SEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cC-CcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 35899999999999999999987 1 11 4678888766556655443 22221 1 111122223
Q ss_pred HHHHHHHHHhcCCceEEEEeCCC
Q 044085 236 LLQLQLENQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 236 ~~~~~l~~~l~~k~~LlVlDdvw 258 (1151)
.....++..+..+.-++|+|.+-
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 33444444444456788899874
No 242
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.36 E-value=0.036 Score=58.04 Aligned_cols=179 Identities=16% Similarity=0.112 Sum_probs=85.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAV 215 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~ 215 (1151)
++++|.+..+.++.+....-... +-.-.+-+.|+|+.|+||||||+.++.... . ..+.+...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~----~~i~~~~~------ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V----PFITASGS------ 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--C----CEEEEEHH------
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--C----CEEEeeHH------
Confidence 46888887666655543221000 000112288999999999999999998432 1 12233211
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHHh-cCCceEEEEeCCCCC----------ChhhH----HhhhccccCCC--CC
Q 044085 216 GITKVILQAAVGSVDVNDLNLLQLQLENQL-KNKKFLLVLDDMWTE----------NYDDW----TNLCKPFKAGL--PG 278 (1151)
Q Consensus 216 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdvw~~----------~~~~~----~~l~~~l~~~~--~g 278 (1151)
++ .... ..........+.+.. ...+.++++|++..- ....+ ..+...+..+. ..
T Consensus 84 ~~----~~~~-----~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~ 154 (254)
T 1ixz_A 84 DF----VEMF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 154 (254)
T ss_dssp HH----HHSC-----TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCC
T ss_pred HH----HHHH-----hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCC
Confidence 11 1100 000111111222222 235689999998210 00111 22332333222 23
Q ss_pred cEEEEecCccccccc-cc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 279 SKIIVTTRNEDVSSM-VT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 279 s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
..++.||..+++... .. .....+.+...+.++-.+++...+-+. ......+ ...+++.+.|.-
T Consensus 155 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 155 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC-CCCcccC----HHHHHHHcCCCC
Confidence 345556665554322 21 122367888888888888887665221 1111111 234666776653
No 243
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.22 E-value=0.017 Score=66.30 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..++|++..++.+...+.... -|.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHHHH
Confidence 468899999998888876643 57899999999999999999843
No 244
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.19 E-value=0.01 Score=74.24 Aligned_cols=137 Identities=19% Similarity=0.260 Sum_probs=72.1
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHH
Q 044085 143 EVYGREKDKEALVGLLRRDDL---NSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
.++|.+..++.+...+..... ........+.|+|+.|+|||++|+.+.+... ..- ...+.+..+.-.... ...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~-~~~i~i~~~~~~~~~-~~s 634 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTE-EAMIRIDMTEYMEKH-AVS 634 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSG-GGEEEECTTTCCSSG-GGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCC-CcEEEEechhccchh-HHH
Confidence 578999999888887765321 0112335788999999999999999998431 111 123344444322210 000
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHHhc-CCceEEEEeCCCCCChhhHHhhhccccCCC-----------CCcEEEEecCc
Q 044085 220 VILQAAVGSVDVNDLNLLQLQLENQLK-NKKFLLVLDDMWTENYDDWTNLCKPFKAGL-----------PGSKIIVTTRN 287 (1151)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~-----------~gs~iivTtr~ 287 (1151)
.++..-.......... .+...+. ...-+|+||++..........+...+..+. .+..||+||..
T Consensus 635 ~l~g~~~~~~G~~~~g----~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGG----QLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp GC------------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HHcCCCCCCcCccccc----hHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 0000000000000001 1222222 234689999997666666666666655431 24458888864
No 245
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.12 E-value=0.054 Score=62.01 Aligned_cols=177 Identities=15% Similarity=0.119 Sum_probs=92.4
Q ss_pred CCccccchhhHHHHHHHHhc---CCC--C-CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLLRR---DDL--N-SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~---~~~--~-~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
-.+++|.++.++++.+.... ... . +..-.+-+.|+|++|+||||||+.++... .. ..+.++.+.-.+.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~----~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV----PFITASGSDFVEM 103 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC----CEEEEEGGGGTSS
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC----CEEEEehhHHHHh
Confidence 45789998877766655432 110 0 00112238999999999999999999843 22 2233433221100
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC----CceEEEEeCCCCCC----------hhhH----HhhhccccCC-
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKN----KKFLLVLDDMWTEN----------YDDW----TNLCKPFKAG- 275 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~----k~~LlVlDdvw~~~----------~~~~----~~l~~~l~~~- 275 (1151)
........++..++. .+.++++|++..-. ...+ ..+...+..+
T Consensus 104 ------------------~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~ 165 (499)
T 2dhr_A 104 ------------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE 165 (499)
T ss_dssp ------------------CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC
T ss_pred ------------------hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc
Confidence 001112233333332 35799999993210 1122 2333333322
Q ss_pred -CCCcEEEEecCccccccc-cc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 276 -LPGSKIIVTTRNEDVSSM-VT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 276 -~~gs~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
..+..|+.||..+++.+. .. .....+.+...+.++-.+++..++-+. ......+ ...|+..+.|..
T Consensus 166 ~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred cCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 234567777776655321 11 112378888888888888887665221 1111111 345667777765
No 246
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.12 E-value=0.027 Score=63.03 Aligned_cols=51 Identities=27% Similarity=0.283 Sum_probs=35.5
Q ss_pred CccccchhhHHHHHHHHh----cCCC--------------------CCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLR----RDDL--------------------NSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~----~~~~--------------------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++|.+..++.|...+. .... ........+.++|++|+|||++|+.+++.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 357899998888887762 0000 00012245789999999999999999983
No 247
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.11 E-value=0.083 Score=56.04 Aligned_cols=181 Identities=15% Similarity=0.103 Sum_probs=87.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCC------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
-++++|.++.++++.+....-... +-.-.+-+.|+|+.|+||||||+.++.... . ..+.+...
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~----~~i~~~~~----- 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V----PFITASGS----- 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT--C----CEEEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC--C----CEEEecHH-----
Confidence 357889887776665544321000 000111288999999999999999998432 1 22333211
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC----------ChhhH----HhhhccccCCC--CC
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE----------NYDDW----TNLCKPFKAGL--PG 278 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~----------~~~~~----~~l~~~l~~~~--~g 278 (1151)
++. ... ...............-...+.++|+|++..- ....+ ..+...+..+. ..
T Consensus 108 -~~~----~~~----~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 108 -DFV----EMF----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp -HHH----HST----TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred -HHH----HHH----hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 111 100 0000111111122222245689999998310 00111 12222222222 22
Q ss_pred cEEEEecCcccccc-ccc---CCCceeecCCCChhhhHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 044085 279 SKIIVTTRNEDVSS-MVT---TPSAAYSLENLLRDDCLSIFVRHSLGRTDFSAHQYLSEIGEKIVDKCNGSP 346 (1151)
Q Consensus 279 s~iivTtr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 346 (1151)
..++.||..+++.. ... .....+.+...+.++-.+++...+-+. ....... ...+++.+.|..
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 34555666554432 111 122378888888888888887665321 1111111 335677777755
No 248
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.11 E-value=0.036 Score=68.24 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=84.5
Q ss_pred CCccccchhhHHHHHHHHhcC----C---CCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRD----D---LNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-.+++|.+..+++|.+++... . .-.-.....|.|+|++|+||||||+.++.. ....| +.+..+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~----i~v~~~~--- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF----FLINGPE--- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE----EEEEHHH---
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE----EEEEchH---
Confidence 356899999999988887531 0 001123356899999999999999999883 22222 3333211
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCCCC--------C---hhhHHhhhccccCC--CCCcE
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMWTE--------N---YDDWTNLCKPFKAG--LPGSK 280 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw~~--------~---~~~~~~l~~~l~~~--~~gs~ 280 (1151)
+...............+.......+.++++|++..- . ......+...+... ..+..
T Consensus 274 -----------l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~ 342 (806)
T 1ypw_A 274 -----------IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----------HSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCE
T ss_pred -----------hhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEE
Confidence 110001111112222333333456789999998321 0 00112222222211 13456
Q ss_pred EEEecCccc-ccccccC---CCceeecCCCChhhhHHHHHHhh
Q 044085 281 IIVTTRNED-VSSMVTT---PSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 281 iivTtr~~~-v~~~~~~---~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
+|.||.... +...... ....+.+...+.++-.+++...+
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 666666542 2222221 12256788888888888887665
No 249
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.98 E-value=0.043 Score=57.93 Aligned_cols=157 Identities=15% Similarity=0.026 Sum_probs=79.1
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCH
Q 044085 142 DEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDA 214 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~ 214 (1151)
.++.|.++.+++|.+.+...-.. +-.-.+-+.++|++|+||||||+.++.... . ..+++..++-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~--~----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG--L----NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT--C----EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC--C----CEEEEEcHHHHhh
Confidence 46788888888877654211000 000111289999999999999999998322 1 2233432221110
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHH-hcCCceEEEEeCCCCCC-----------hhhHHhhhccccCCC--CCcE
Q 044085 215 VGITKVILQAAVGSVDVNDLNLLQLQLENQ-LKNKKFLLVLDDMWTEN-----------YDDWTNLCKPFKAGL--PGSK 280 (1151)
Q Consensus 215 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdvw~~~-----------~~~~~~l~~~l~~~~--~gs~ 280 (1151)
.....+.....+.+. -...+.++++|++..-. ......+...+..+. ...-
T Consensus 84 ---------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i 148 (274)
T 2x8a_A 84 ---------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVF 148 (274)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEE
T ss_pred ---------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEE
Confidence 000001111112222 13457899999995310 001122222232221 2345
Q ss_pred EEEecCcccccccc-c---CCCceeecCCCChhhhHHHHHHhh
Q 044085 281 IIVTTRNEDVSSMV-T---TPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 281 iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
++.+|...++.+.. . .....+.+...+.++-.++|....
T Consensus 149 ~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 149 IMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 66667666553321 1 222367788888888888887654
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.82 E-value=0.006 Score=61.68 Aligned_cols=111 Identities=13% Similarity=-0.068 Sum_probs=61.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCC---CCcchHHHHHHHHHHh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSV---DVNDLNLLQLQLENQL 245 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~~~l 245 (1151)
-.++.|+|..|+||||++..+.+... .+- ..++.+..... .. -...++.+++... .....+++...+.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~--~~g-~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE--YAD-VKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--HTT-CCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH--hcC-CEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 36889999999999999998888443 222 23444433322 11 1112333333111 1223344445555544
Q ss_pred cCCce-EEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcc
Q 044085 246 KNKKF-LLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNE 288 (1151)
Q Consensus 246 ~~k~~-LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 288 (1151)
.+.++ +||+|.+..-+.+..+.+. .+.+ .|-.||+|-+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 44444 9999999543333444333 2333 267899998854
No 251
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.62 E-value=0.031 Score=60.83 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=54.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcchHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS------VDVNDLNLLQLQL 241 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l 241 (1151)
.-.++.|+|++|+||||||.+++.... ..= ..++|++....++.. .+++++.. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~g-g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMG-GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTT-CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcC-CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 346999999999999999999988533 221 457888877766654 34444311 1233455555556
Q ss_pred HHHhc-CCceEEEEeCCC
Q 044085 242 ENQLK-NKKFLLVLDDMW 258 (1151)
Q Consensus 242 ~~~l~-~k~~LlVlDdvw 258 (1151)
+..++ .+.-++|+|.+-
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 65554 456799999984
No 252
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.61 E-value=0.013 Score=53.60 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=41.6
Q ss_pred cEEEecCcccc--ccCccccCCCcccEEEcccccccccchh-hhcCCCCcEEeccccc
Q 044085 559 RVLSLCGYWIL--QLPNDIGELKHLRYLEFSRTAIEVLPES-VSTLYNLQTLILERCY 613 (1151)
Q Consensus 559 r~L~L~~~~i~--~lp~~i~~l~~Lr~L~Ls~n~i~~lp~~-i~~L~~L~~L~L~~~~ 613 (1151)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 47788888887 8886553 3688899999999988665 7788888888888874
No 253
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.53 E-value=0.11 Score=57.03 Aligned_cols=159 Identities=11% Similarity=-0.061 Sum_probs=99.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HHhcC
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLE-NQLKN 247 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~-~~l~~ 247 (1151)
.++..++|..|.||++.|+.+..... ...| +....+.+....+..++... +. .-+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~--------------------~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGF-EEHHTFSIDPNTDWNAIFSL--------------------CQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTC-CEEEEEECCTTCCHHHHHHH--------------------HHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCC-CeeEEEEecCCCCHHHHHHH--------------------hcCcCCcc
Confidence 35888999999999999999988432 2234 22122233333333333222 21 11235
Q ss_pred CceEEEEeCCCC-CChhhHHhhhccccCCCCCcEEEEecCc-------ccccccccCCCceeecCCCChhhhHHHHHHhh
Q 044085 248 KKFLLVLDDMWT-ENYDDWTNLCKPFKAGLPGSKIIVTTRN-------EDVSSMVTTPSAAYSLENLLRDDCLSIFVRHS 319 (1151)
Q Consensus 248 k~~LlVlDdvw~-~~~~~~~~l~~~l~~~~~gs~iivTtr~-------~~v~~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 319 (1151)
++-++|+|++.. .+...++.+...+....+++.+|++|.. ..+..........++..++++++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677888999865 4456777787777655567777766533 23333333333488999999999888777765
Q ss_pred cCCCCCCCCchHHHHHHHHHHHcCCChhHHHHHH
Q 044085 320 LGRTDFSAHQYLSEIGEKIVDKCNGSPLAAKTLG 353 (1151)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 353 (1151)
-... .... .+.+..+++.++|...++...-
T Consensus 156 ~~~g-~~i~---~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 156 KQLN-LELD---DAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp HHTT-CEEC---HHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHcC-CCCC---HHHHHHHHHHhchHHHHHHHHH
Confidence 3221 1122 2678889999999988776643
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.44 E-value=0.083 Score=51.44 Aligned_cols=20 Identities=55% Similarity=0.806 Sum_probs=18.7
Q ss_pred EEEEEecCCCccHHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLV 189 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v 189 (1151)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999999
No 255
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.43 E-value=0.05 Score=59.55 Aligned_cols=52 Identities=12% Similarity=0.080 Sum_probs=38.2
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhcc---CCCceEEEEeCCCCCHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEH---FPDFRAWAYVSEDFDAVGITK 219 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~vs~~~~~~~~~~ 219 (1151)
.-.++.|+|.+|+||||||.+++........ -...++|++....++...+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 4468999999999999999998875322110 125688999888877776654
No 256
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.41 E-value=0.017 Score=52.90 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=36.4
Q ss_pred EEEEeCCccc--cccCCCCCCCccEEEEcCCCCcccCccccCCCCccceeeecCCCCC
Q 044085 945 TISMYGSRLV--SFAEGGLPSNLCSLTLFGCRYLTALPNGIYNLSSLQHLEIRACPRI 1000 (1151)
Q Consensus 945 ~L~ls~n~l~--~~~~~~~~~~L~~L~L~~n~~~~~l~~~l~~l~~L~~L~L~~~~~~ 1000 (1151)
.++-+++.++ .+|. .+|.+|+.|+|++|.+...-+..|..+++|++|+|++|+..
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5667777776 6654 36667777777777776644455666677777777666553
No 257
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.34 E-value=0.046 Score=56.32 Aligned_cols=113 Identities=15% Similarity=0.000 Sum_probs=60.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCC--------------------
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSV-------------------- 229 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~-------------------- 229 (1151)
.+++|+|..|+|||||++.++.... ..- ..+.|+.... ....+...+. .+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~--~~~-~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL--RDG-DPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH--HHT-CCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----C
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH--HCC-CeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCc
Confidence 4899999999999999999986432 211 3456665433 3444443332 222000
Q ss_pred ----CCcchHHHHHHHHHHhc-CCc--eEEEEeCCCC---CChhhHHhhhccccC--CCCCcEEEEecCcc
Q 044085 230 ----DVNDLNLLQLQLENQLK-NKK--FLLVLDDMWT---ENYDDWTNLCKPFKA--GLPGSKIIVTTRNE 288 (1151)
Q Consensus 230 ----~~~~~~~~~~~l~~~l~-~k~--~LlVlDdvw~---~~~~~~~~l~~~l~~--~~~gs~iivTtr~~ 288 (1151)
...+.++....+...+. .+. .++|+|..-. .+......+...+.. ...|.-||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134455555554443 233 3999999842 122233333333222 12467888888765
No 258
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.20 E-value=0.04 Score=57.18 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=33.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhcc---CCCceEEEEeCCCCCHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEH---FPDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~---f~~~~~wv~vs~~~~~~~~ 217 (1151)
.++.|+|++|+||||||..++........ -...++|+.....++...+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 48999999999999999999874322110 1156788887765555544
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.12 E-value=0.02 Score=57.47 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=34.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 146 GREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|++.++.+.+.+..... ....+|+|+|..|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~~---~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKT---AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSCC---SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355667788888775421 34579999999999999999999873
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.09 E-value=0.065 Score=58.79 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=54.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcchHHHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS------VDVNDLNLLQLQLEN 243 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~~ 243 (1151)
.++.|.|.+|+||||||.+++.... ..- ..++|++....++.. .++.++.. ....+.++....++.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~--~~g-~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ--KAG-GTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH--HTT-CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH--HCC-CeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4888999999999999999887432 222 568999988776654 13333311 122345666666666
Q ss_pred Hhc-CCceEEEEeCCC
Q 044085 244 QLK-NKKFLLVLDDMW 258 (1151)
Q Consensus 244 ~l~-~k~~LlVlDdvw 258 (1151)
..+ .+.-+||+|.+-
T Consensus 147 l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHTTTCCSEEEEECTT
T ss_pred HHhcCCCCEEEEeChH
Confidence 654 345699999983
No 261
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.01 E-value=0.028 Score=60.65 Aligned_cols=83 Identities=17% Similarity=0.198 Sum_probs=46.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCc-eEEEEeCCCCCHHHHHHHHHHHhc-----CCCCCcchHHH-----H
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDF-RAWAYVSEDFDAVGITKVILQAAV-----GSVDVNDLNLL-----Q 238 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~~wv~vs~~~~~~~~~~~i~~~~~-----~~~~~~~~~~~-----~ 238 (1151)
..++|+|..|+|||||++.+.+.. ....++. ++++-+.+.... ..++.+.+. ...+....... .
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i--~~~~~~v~~I~~lIGER~~E---v~~~~~~~~~~vV~atadep~~~r~~~a~~a 249 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI--AYNHPDCVLMVLLIDERPEE---VTEMQRLVKGEVVASTFDEPASRHVQVAEMV 249 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH--HHHCTTSEEEEEEESSCHHH---HHHHHTTCSSEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH--hhcCCCeeEEEEEecCChHH---HHHHHHHhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 478999999999999999998743 2222243 445667765422 122223221 11111111111 1
Q ss_pred HHHHHHh--cCCceEEEEeCC
Q 044085 239 LQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 239 ~~l~~~l--~~k~~LlVlDdv 257 (1151)
-.+.+++ +++.+||++||+
T Consensus 250 lt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 250 IEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp HHHHHHHHHTSCEEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEEeCc
Confidence 1122233 589999999999
No 262
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.94 E-value=0.046 Score=59.41 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=39.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccC---CCceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHF---PDFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
.++.|+|.+|+||||||.+++........+ ...++|++....++..++... ++.+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~-~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM-AKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH-HHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH-HHHh
Confidence 589999999999999999988743221111 256889988888877766543 3444
No 263
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.92 E-value=0.05 Score=59.23 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=39.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhc---------cCC----CceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEE---------HFP----DFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~f~----~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
.-.++.|+|.+|+||||+|.+++.+..... ... ..++|++....++..++.+. ++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHc
Confidence 346899999999999999999887432211 111 46789988888877776643 3444
No 264
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.89 E-value=0.16 Score=57.12 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=30.5
Q ss_pred hHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 150 DKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
-.+++.+++.....+ .....++|.|+|.+|+||||+|..++...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344566666543211 12356899999999999999999998744
No 265
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.72 E-value=0.11 Score=54.69 Aligned_cols=81 Identities=10% Similarity=0.121 Sum_probs=52.4
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccC-CCceEEEEeCCCCCHHHHHHHHHHHhcCCC------CCcchHHH-HHHHH
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHF-PDFRAWAYVSEDFDAVGITKVILQAAVGSV------DVNDLNLL-QLQLE 242 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f-~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~------~~~~~~~~-~~~l~ 242 (1151)
++-|.|++|+||||||.+++.... ..+ ...++||+....++.. .+++++... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~--~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYM--RQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHH--HHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 789999999999999999887433 221 1568899887777753 245555211 12344554 33333
Q ss_pred HH--h-cCCceEEEEeCCC
Q 044085 243 NQ--L-KNKKFLLVLDDMW 258 (1151)
Q Consensus 243 ~~--l-~~k~~LlVlDdvw 258 (1151)
.. + .++.-++|+|-|-
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 32 2 3567899999984
No 266
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.58 E-value=0.039 Score=53.80 Aligned_cols=115 Identities=16% Similarity=0.051 Sum_probs=59.9
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC---CCCHHHHHHHHHHHhc--CC---CCCcc-------hH
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE---DFDAVGITKVILQAAV--GS---VDVND-------LN 235 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~---~~~~~~~~~~i~~~~~--~~---~~~~~-------~~ 235 (1151)
.|-|++-.|.||||.|-...- +...+= ..+.++.... ......++..+.-.+. .. ....+ ..
T Consensus 30 ~i~v~tG~GkGKTTaA~Glal--RA~g~G-~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAA--RAVGHG-KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHH--HHHHTT-CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHCC-CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 455666666999999988777 333332 3444554332 2233344433310000 00 01111 11
Q ss_pred HHHHHHHHHhcCCc-eEEEEeCCCC---CChhhHHhhhccccCCCCCcEEEEecCcc
Q 044085 236 LLQLQLENQLKNKK-FLLVLDDMWT---ENYDDWTNLCKPFKAGLPGSKIIVTTRNE 288 (1151)
Q Consensus 236 ~~~~~l~~~l~~k~-~LlVlDdvw~---~~~~~~~~l~~~l~~~~~gs~iivTtr~~ 288 (1151)
......++.+.+.+ =|||||++-. -.....+++...+.......-||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 22334555565544 4999999821 11223345555555555677899999985
No 267
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.44 E-value=0.084 Score=57.70 Aligned_cols=82 Identities=16% Similarity=0.072 Sum_probs=53.2
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcchHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS------VDVNDLNLLQLQLE 242 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l~ 242 (1151)
-+++.|+|.+|+||||||.+++.... ..= ..++|++....++.. .++.++.. ....+.++....++
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~--~~g-~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQ--AAG-GIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTT-CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCC-CeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 35899999999999999999987433 222 568899988776653 23333311 01234455555555
Q ss_pred HHhc-CCceEEEEeCCC
Q 044085 243 NQLK-NKKFLLVLDDMW 258 (1151)
Q Consensus 243 ~~l~-~k~~LlVlDdvw 258 (1151)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 356799999983
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.44 E-value=0.16 Score=54.14 Aligned_cols=87 Identities=18% Similarity=0.105 Sum_probs=48.0
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHH--HHHHHHHHhc----CCCCCcchHH-HHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVG--ITKVILQAAV----GSVDVNDLNL-LQLQ 240 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~--~~~~i~~~~~----~~~~~~~~~~-~~~~ 240 (1151)
...+|+|+|.+|+||||++..++.... ..- ..+.++.. +.+.... -+...++..+ ......+... ....
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g-~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEG-KSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTT-CCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcC-CEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 467999999999999999999987433 221 33445443 3333221 1223333333 1111122222 2334
Q ss_pred HHHHhcCCceEEEEeCCC
Q 044085 241 LENQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 241 l~~~l~~k~~LlVlDdvw 258 (1151)
+...+..+.=++++|-.-
T Consensus 179 l~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 179 VAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHHTTCSEEEEEECC
T ss_pred HHHHHhcCCCEEEEECCC
Confidence 555555556688889663
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.43 E-value=0.16 Score=53.76 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.5
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988744
No 270
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.33 E-value=0.12 Score=56.43 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=52.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCC------CCcchHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSV------DVNDLNLLQLQLE 242 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~l~ 242 (1151)
-+++.|.|.+|+||||||.+++.... ..- ..++|++....++... +..++... +..+.++....++
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~--~~g-~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQ--REG-KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTT-CCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCC-CeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 35899999999999999999887433 222 4688999887776432 33333110 1223444555554
Q ss_pred HHhc-CCceEEEEeCC
Q 044085 243 NQLK-NKKFLLVLDDM 257 (1151)
Q Consensus 243 ~~l~-~k~~LlVlDdv 257 (1151)
...+ .+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 4433 45669999987
No 271
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.18 E-value=0.42 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999999999999988864
No 272
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.93 E-value=0.16 Score=56.90 Aligned_cols=85 Identities=19% Similarity=0.237 Sum_probs=49.7
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC-HHHHHHHHHHHhc-------CCCCCcchHH------
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD-AVGITKVILQAAV-------GSVDVNDLNL------ 236 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~-~~~~~~~i~~~~~-------~~~~~~~~~~------ 236 (1151)
.++|+|..|+||||||+.+..+.. ..+.+..+++-+.+..+ ..++.+++...-. .....+....
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~--~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIA--QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHH--HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhh--hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 588999999999999999988533 33435667777776543 3344444432200 0011111111
Q ss_pred HHHHHHHHh---cCCceEEEEeCC
Q 044085 237 LQLQLENQL---KNKKFLLVLDDM 257 (1151)
Q Consensus 237 ~~~~l~~~l---~~k~~LlVlDdv 257 (1151)
..-.+.+++ +++..|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 111233333 588999999999
No 273
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.88 E-value=0.044 Score=55.21 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-.++|.+.+... .....+|+|+|+.|+|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555432 124579999999999999999999874
No 274
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.80 E-value=0.041 Score=60.20 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=62.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHH-HHHHHHHhcCCCCCcchHHHHHHHHHHhcCC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGI-TKVILQAAVGSVDVNDLNLLQLQLENQLKNK 248 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k 248 (1151)
.+++|+|+.|+||||+.+.+..-. .... ...+ +++.++.....- ...++.+...... .......+...|...
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~--~~~~-~~~i-~t~ed~~e~~~~~~~~~v~q~~~~~~---~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL--NNTK-YHHI-LTIEDPIEFVHESKKCLVNQREVHRD---TLGFSEALRSALRED 196 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH--HHHC-CCEE-EEEESSCCSCCCCSSSEEEEEEBTTT---BSCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--cCCC-CcEE-EEccCcHHhhhhccccceeeeeeccc---cCCHHHHHHHHhhhC
Confidence 489999999999999999987732 2221 1222 233332211000 0000000000011 122344788888899
Q ss_pred ceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccccc
Q 044085 249 KFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVS 291 (1151)
Q Consensus 249 ~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 291 (1151)
+=+|++|.+. +.+.++.+..... .|.-||+||...+.+
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~~---~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAAE---TGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHHH---TTCEEEEEESCSSHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHHh---cCCEEEEEEccChHH
Confidence 9999999995 4556655444432 366688898876654
No 275
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.78 E-value=0.14 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.174 Sum_probs=22.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhhch
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..+++|+|.+|+||||++..++...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999998743
No 276
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.75 E-value=0.41 Score=53.43 Aligned_cols=26 Identities=31% Similarity=0.175 Sum_probs=23.0
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999998744
No 277
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.75 E-value=0.029 Score=54.92 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 278
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.72 E-value=0.19 Score=53.76 Aligned_cols=45 Identities=13% Similarity=0.091 Sum_probs=31.0
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhh
Q 044085 145 YGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 145 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+|....+..+...+.... ......+|+|.|..|+||||+|+.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444444444444432 234667999999999999999999876
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.69 E-value=0.03 Score=54.46 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=20.3
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|.|+.|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999987
No 280
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.60 E-value=0.2 Score=51.21 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=31.9
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhh---ccCCCceEEEEeCCCCCHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVE---EHFPDFRAWAYVSEDFDAVG 216 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~f~~~~~wv~vs~~~~~~~ 216 (1151)
-.+++|+|+.|+|||||++.++...... .......+|+.-...+....
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~ 75 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 75 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH
Confidence 4699999999999999999997632211 11224577877655444433
No 281
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.53 E-value=0.068 Score=52.43 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=60.8
Q ss_pred hhhhhcCCCCcccEEEecCc-cccc-----cCccccCCCcccEEEccccccc-----ccchhhhcCCCCcEEeccccccc
Q 044085 547 LVFHVIPRLRRLRVLSLCGY-WILQ-----LPNDIGELKHLRYLEFSRTAIE-----VLPESVSTLYNLQTLILERCYRL 615 (1151)
Q Consensus 547 ~~~~~~~~l~~Lr~L~L~~~-~i~~-----lp~~i~~l~~Lr~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l 615 (1151)
.+...+..-+.|+.|+|+++ .|.. +-+.+..-.+|+.|+|++|.|. .+...+..-+.|++|+|++| .+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence 34455566678888998875 6542 4456666778888888888887 34555667788888888888 44
Q ss_pred cc-----cccccccCCccCeeecCCC
Q 044085 616 KK-----LFPDIGNLTNLRHLKNSHS 636 (1151)
Q Consensus 616 ~~-----lp~~~~~L~~L~~L~l~~~ 636 (1151)
+. +-..+..-+.|++|+++++
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCC
Confidence 32 2233555566888888754
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.52 E-value=0.038 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.51 E-value=0.039 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+++|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999873
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.38 E-value=0.036 Score=55.41 Aligned_cols=22 Identities=41% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
++|.|+|+.|+||||+|+.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.30 E-value=0.081 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhh
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999987
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.28 E-value=0.049 Score=54.47 Aligned_cols=25 Identities=40% Similarity=0.428 Sum_probs=22.2
Q ss_pred eEEEEEecCCCccHHHHHHHHhhch
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..+|+|+|+.|+||||+|+.+....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998843
No 287
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.21 E-value=0.19 Score=54.99 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=33.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccC---CCceEEEEeCCCCCHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHF---PDFRAWAYVSEDFDAVGI 217 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f---~~~~~wv~vs~~~~~~~~ 217 (1151)
.-.++.|+|+.|+|||||+..++......... ...++|++-...+....+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i 182 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI 182 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH
Confidence 44799999999999999999998743211111 123488887665544443
No 288
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.16 E-value=0.075 Score=57.18 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=32.0
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 145 YGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 145 vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
|+.+.-.+.+++.+...-. .+....|.|+|+.|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445555666666643321 124567899999999999999999883
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.16 E-value=0.042 Score=53.88 Aligned_cols=23 Identities=13% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999873
No 290
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.15 E-value=0.34 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.206 Sum_probs=22.4
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
...++.|+|.+|+||||++..++...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998743
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.14 E-value=0.035 Score=54.00 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 292
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.06 E-value=0.044 Score=54.02 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+.|.|+|+.|+||||+|+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 293
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.01 E-value=0.066 Score=59.43 Aligned_cols=50 Identities=32% Similarity=0.296 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhcC-------C--CCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 143 EVYGREKDKEALVGLLRRD-------D--LNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.++|.+..++.+...+... . .........|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999888877310 0 000112346889999999999999999983
No 294
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.92 E-value=0.083 Score=55.04 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhh
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+.++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 14 ALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33444444444332 234567899999999999999999987
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.91 E-value=0.055 Score=53.69 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|.|.|+.|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.78 E-value=0.055 Score=53.74 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999884
No 297
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.73 E-value=0.54 Score=50.63 Aligned_cols=26 Identities=35% Similarity=0.291 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
...+++|+|+.|+||||+++.+..-.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998743
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.72 E-value=0.071 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+|+|+|+.|+||||+|+.+..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.69 E-value=0.055 Score=54.13 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+|+|+|+.|+||||+|+.+..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 300
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.67 E-value=0.79 Score=51.69 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=29.4
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
...+++|+|..|+|||||++.+..-.. . . ...+++.-.+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~--~-~-~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE--Q-Q-GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH--H-T-TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh--h-c-CCeEEEecCcccc
Confidence 457999999999999999999987432 2 1 3445554344444
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.66 E-value=0.44 Score=50.61 Aligned_cols=87 Identities=17% Similarity=0.025 Sum_probs=46.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC-CHHHHHHHHHHHhc----CCCCCcchHHHHHHHHH
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF-DAVGITKVILQAAV----GSVDVNDLNLLQLQLEN 243 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~-~~~~~~~~i~~~~~----~~~~~~~~~~~~~~l~~ 243 (1151)
..+++++|.+|+||||++..++.... ..- ..+.++...-.. ...+.++......+ ......+...+.....+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g-~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKG-FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTT-CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCC-CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 57899999999999999999987433 221 345555543221 12222333333333 11122334444333333
Q ss_pred Hhc-CCceEEEEeCCC
Q 044085 244 QLK-NKKFLLVLDDMW 258 (1151)
Q Consensus 244 ~l~-~k~~LlVlDdvw 258 (1151)
.++ ..-=++++|-.-
T Consensus 175 ~~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEeCCC
Confidence 443 333378888754
No 302
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=92.66 E-value=0.06 Score=57.82 Aligned_cols=39 Identities=21% Similarity=0.158 Sum_probs=28.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeC
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVS 209 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs 209 (1151)
+.+||+|.|-|||||||.|-.+..-. ...= ..+.-|...
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aL--A~~G-kkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAF--SILG-KRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH--HHTT-CCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHH--HHCC-CeEEEEecC
Confidence 56899999999999999998887632 2222 345666665
No 303
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.62 E-value=0.26 Score=54.74 Aligned_cols=55 Identities=16% Similarity=0.080 Sum_probs=35.8
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhc----cCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEE----HFPDFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~f~~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
-.++.|+|..|+|||||+..++-...... .- ..++|++....++...+. .+++.+
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~-~~viyid~E~~~~~~rl~-~~a~~~ 236 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGE-GKCLYIDTEGTFRPVRLV-SIAQRF 236 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCS-SEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCC-CcEEEEeCCCccCHHHHH-HHHHHc
Confidence 35899999999999999997753222111 12 457888877666655443 244444
No 304
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.60 E-value=0.06 Score=54.21 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999874
No 305
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.59 E-value=0.067 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+.++|.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999874
No 306
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.49 E-value=0.063 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.9
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 35899999999999999997554
No 307
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.48 E-value=0.052 Score=54.41 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 308
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.43 E-value=0.08 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|+|.|+.|+||||+|+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 309
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.43 E-value=0.069 Score=52.81 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.2
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.43 E-value=0.066 Score=55.75 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++|.|.|+.|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999873
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.39 E-value=0.056 Score=52.95 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.2
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.++|.|+|+.|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999999873
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.37 E-value=0.068 Score=52.58 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=21.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 313
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.37 E-value=0.063 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.33 E-value=0.066 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999883
No 315
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.33 E-value=0.074 Score=53.28 Aligned_cols=24 Identities=42% Similarity=0.427 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 316
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.31 E-value=0.071 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.8
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+|+|.|+.|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 317
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.30 E-value=0.068 Score=53.66 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 4899999999999999999987
No 318
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.27 E-value=0.072 Score=53.77 Aligned_cols=25 Identities=44% Similarity=0.343 Sum_probs=22.0
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|+|+|+.|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 319
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.26 E-value=0.069 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++++|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999884
No 320
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.22 E-value=0.056 Score=52.70 Aligned_cols=21 Identities=38% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.|.|+|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 321
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.21 E-value=0.12 Score=50.61 Aligned_cols=112 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred CCCCccEEEccCC-CCcccccchhhhhhhhcCCCCcccEEEecCccccc-----cCccccCCCcccEEEccccccc----
Q 044085 523 EVEYLRTLLALPV-STRKQSFVTKNLVFHVIPRLRRLRVLSLCGYWILQ-----LPNDIGELKHLRYLEFSRTAIE---- 592 (1151)
Q Consensus 523 ~~~~Lr~L~~~~~-~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~Lr~L~Ls~n~i~---- 592 (1151)
.-..|+.|.+... ... ......+-..+..-..|+.|+|++|.+.. +.+.+..-..|++|+|++|.|.
T Consensus 39 ~n~~L~~L~L~~nn~ig---d~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVS---KERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TCSSCCEEECTTCCSSC---HHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred cCCCccEEECCCCCCCC---HHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 4566777777543 210 01122345567777899999999999873 4455666789999999999998
Q ss_pred -ccchhhhcCCCCcEEeccccc--ccc-----ccccccccCCccCeeecCCCC
Q 044085 593 -VLPESVSTLYNLQTLILERCY--RLK-----KLFPDIGNLTNLRHLKNSHSN 637 (1151)
Q Consensus 593 -~lp~~i~~L~~L~~L~L~~~~--~l~-----~lp~~~~~L~~L~~L~l~~~~ 637 (1151)
.+-..+..-+.|++|+|++|. .++ .+...+..-+.|+.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 345566777889999998652 122 233445667889999998766
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.19 E-value=0.079 Score=53.28 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|+|+|+.|+||||+|+.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 323
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.17 E-value=0.91 Score=48.79 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=37.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
.++.|.|.+|+||||+|..++.+..... ..++|++.. -+..++...++...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC--CCHHHHHHHHHHHH
Confidence 5899999999999999999987543322 456776654 55677777766553
No 324
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.11 E-value=0.06 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=21.4
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.++|.|+|+.|+||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999873
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.11 E-value=0.072 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999873
No 326
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.11 E-value=0.079 Score=55.22 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|+|.|+.|+||||+|+.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 327
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.11 E-value=0.093 Score=51.67 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=22.7
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
...+|.|+|+.|+||||+|+.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998843
No 328
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.10 E-value=0.076 Score=51.71 Aligned_cols=23 Identities=43% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEecCCCccHHHHHHHHhhch
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998754
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.08 E-value=0.075 Score=53.41 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+|+|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999873
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.06 E-value=0.071 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 331
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.02 E-value=0.35 Score=52.20 Aligned_cols=52 Identities=25% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCc-eEEEEeCCC
Q 044085 153 ALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDF-RAWAYVSED 211 (1151)
Q Consensus 153 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~-~~wv~vs~~ 211 (1151)
++++.+..-. +-.-++|+|.+|+|||+|++++.+... .+.++. ++++-+.+.
T Consensus 164 raID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~--~~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIA--ENHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHH--HHCTTSEEEEEECSCC
T ss_pred hhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHh--hcCCCeEEEEEEeccC
Confidence 5566665432 224679999999999999999998433 222243 355666654
No 332
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.01 E-value=0.082 Score=53.11 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=20.2
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.01 E-value=0.09 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=20.8
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...|+|.|+.|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999987
No 334
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.99 E-value=0.073 Score=53.39 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=19.8
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+|+|+|+.|+||||+|+.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 335
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.97 E-value=0.061 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999873
No 336
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.97 E-value=0.66 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=22.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhhch
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..+++|+|.+|+||||++..++.-.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998743
No 337
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.92 E-value=0.089 Score=52.60 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|.|+|+.|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999873
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.90 E-value=0.086 Score=55.21 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999874
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.89 E-value=0.059 Score=53.00 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=19.8
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 340
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.84 E-value=0.1 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=21.2
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+|+|.|+.|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999987
No 341
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.84 E-value=0.079 Score=54.19 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 342
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.79 E-value=0.9 Score=48.92 Aligned_cols=52 Identities=17% Similarity=0.041 Sum_probs=37.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
.++.|.|.+|+||||+|..++.+... ....++|++. .-+..++...++....
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 48899999999999999999886433 1145666554 4567777777766543
No 343
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.75 E-value=0.22 Score=60.30 Aligned_cols=98 Identities=17% Similarity=0.144 Sum_probs=56.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC
Q 044085 141 EDEVYGREKDKEALVGLLRRDDLN-------SGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD 213 (1151)
Q Consensus 141 ~~~~vgr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~ 213 (1151)
-.++.|.++.+++|.+.+...... +....+-|.++|++|.|||.+|+++++ +....| +.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~--e~~~~f------~~v~~--- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN--ECQANF------ISIKG--- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH--TTTCEE------EECCH---
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH--HhCCce------EEecc---
Confidence 346778888888887765432110 112334578999999999999999999 333333 33431
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcCCceEEEEeCCC
Q 044085 214 AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKNKKFLLVLDDMW 258 (1151)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdvw 258 (1151)
. +++.. .-.+....+.......-+..+.+|++|++.
T Consensus 545 -~----~l~s~----~vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 545 -P----ELLTM----WFGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp -H----HHHTT----TCSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred -c----hhhcc----ccchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 1 11111 112222233333333335678999999984
No 344
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.75 E-value=0.094 Score=51.69 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999987
No 345
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.72 E-value=0.13 Score=53.08 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|+|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 346
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.71 E-value=0.15 Score=52.13 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 148 EKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++..+.+.+.+... ...+|+|+|.+|+|||||+.++...
T Consensus 23 ~~~a~~~r~~~~~~------~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNKH------GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHHT------TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC------CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555555432 4578899999999999999999874
No 347
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.70 E-value=0.088 Score=51.79 Aligned_cols=25 Identities=16% Similarity=0.526 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999873
No 348
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.69 E-value=0.099 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.5
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|+|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 349
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.65 E-value=0.096 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.500 Sum_probs=21.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.+|.|.|+.|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998843
No 350
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.62 E-value=0.071 Score=51.77 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=19.8
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+|.|.|+.|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 351
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.62 E-value=1.4 Score=50.43 Aligned_cols=43 Identities=26% Similarity=0.199 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 151 KEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 151 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.++|.+++...... .....++|+|+|.+|+||||++..+....
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566666543211 11356799999999999999999998743
No 352
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.59 E-value=0.31 Score=52.42 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.3
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
....+|+|+|.+|+||||++..++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999998743
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.53 E-value=0.073 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999873
No 354
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.48 E-value=0.075 Score=51.87 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.|.|+|+.|+|||||++++..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999887
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.47 E-value=0.085 Score=52.62 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|.|+.|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.46 E-value=0.098 Score=50.47 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=19.7
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 357
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.44 E-value=0.069 Score=52.44 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=16.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 358
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.44 E-value=0.11 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|+|+|..|+|||||++.+..-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4579999999999999999999873
No 359
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.41 E-value=0.42 Score=53.63 Aligned_cols=86 Identities=20% Similarity=0.312 Sum_probs=54.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC-HHHHHHHHHHHhc-C--------------CCCCcc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD-AVGITKVILQAAV-G--------------SVDVND 233 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~-~~~~~~~i~~~~~-~--------------~~~~~~ 233 (1151)
.-++|.|..|+|||+|++.+.++.. +.+- +..+++-+.+..+ ..++.+++...-. . ..+...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a-~~~~-~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIA-KAHG-GVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTT-TTCS-SCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHH-hhCC-CEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 3679999999999999999988532 1233 7788888887654 4556666654311 1 111111
Q ss_pred h-----HHHHHHHHHHhc---CCceEEEEeCC
Q 044085 234 L-----NLLQLQLENQLK---NKKFLLVLDDM 257 (1151)
Q Consensus 234 ~-----~~~~~~l~~~l~---~k~~LlVlDdv 257 (1151)
. ....-.+.++++ ++.+|+++||+
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsi 275 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNI 275 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 1 112233445554 57999999999
No 360
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.41 E-value=0.09 Score=54.55 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=21.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+|+|+|+.|+||||+++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999995
No 361
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.36 E-value=0.71 Score=51.57 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=37.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC-HHHHHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD-AVGITKVILQA 224 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~-~~~~~~~i~~~ 224 (1151)
.-++|.|..|+|||+|++++.++.. +.+- +..+++-+.+... ..++.+++...
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~-~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVA-KAHG-GYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT-TTCS-SEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhH-hhCC-CEEEEEECCCcchHHHHHHHHhhhc
Confidence 4689999999999999999988532 1232 6678888887653 45555666543
No 362
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.32 E-value=0.11 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=21.5
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|+|+|+.|+|||||++.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998773
No 363
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.26 E-value=0.19 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=22.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+++|+|+.|+||||+++.++.-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.23 E-value=0.1 Score=51.73 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.4
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 365
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.22 E-value=0.14 Score=50.07 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 151 KEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+..+..++... +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55566666432 12346899999999999999999884
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.22 E-value=0.1 Score=53.14 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..|.|.|+.|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 367
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.14 E-value=0.13 Score=48.68 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|+.|.|||||++.++.-
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 59999999999999999999873
No 368
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.07 E-value=0.11 Score=52.66 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999884
No 369
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.01 E-value=0.14 Score=51.99 Aligned_cols=41 Identities=27% Similarity=0.287 Sum_probs=30.7
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 146 GREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 146 gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+.++..+.+.+.+... ..++|+|+|.+|+|||||+.++...
T Consensus 13 ~~~~~~~~~~~~~~~~------~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRES------GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHH------TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhccc------CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4445556666655432 4578999999999999999999874
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.96 E-value=0.12 Score=55.24 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+++|+|+.|+||||+++.++.-
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 459999999999999999999873
No 371
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.85 E-value=0.22 Score=54.21 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=22.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
...+++|+|+.|+||||+++.++.-.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999998743
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.84 E-value=0.11 Score=52.45 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhhch
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998843
No 373
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.75 E-value=0.12 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999987
No 374
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.74 E-value=0.43 Score=54.59 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=62.8
Q ss_pred hhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcC
Q 044085 148 EKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVG 227 (1151)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~ 227 (1151)
.+.++.+..++.... +.+.|.|.+|+||||++..+..... ......++.+..+. ...+.+.+.++.
T Consensus 31 ~~av~~~~~~i~~~~-------~~~li~G~aGTGKT~ll~~~~~~l~--~~~~~~il~~a~T~-----~Aa~~l~~~~~~ 96 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-------HHVTINGPAGTGATTLTKFIIEALI--STGETGIILAAPTH-----AAKKILSKLSGK 96 (459)
T ss_dssp HHHHHHHHHHHHSSS-------CEEEEECCTTSCHHHHHHHHHHHHH--HTTCCCEEEEESSH-----HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhcCC-------CEEEEEeCCCCCHHHHHHHHHHHHH--hcCCceEEEecCcH-----HHHHHHHhhhcc
Confidence 344455555555432 2889999999999999999988443 22202333332221 112222222210
Q ss_pred CCCCcchHHHHHH----------H---HHHhcCCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCcccc
Q 044085 228 SVDVNDLNLLQLQ----------L---ENQLKNKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDV 290 (1151)
Q Consensus 228 ~~~~~~~~~~~~~----------l---~~~l~~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v 290 (1151)
........... + ......+--+||+|++...+...+..+...++ .+.+|++.--..+.
T Consensus 97 --~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~Ql 167 (459)
T 3upu_A 97 --EASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNKQI 167 (459)
T ss_dssp --CEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTTSC
T ss_pred --chhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHHHc
Confidence 01111100000 0 00000123589999997666666776766654 46677776654443
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.72 E-value=0.12 Score=53.79 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.8
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|+|+.|+||||+++.+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999997
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.71 E-value=0.12 Score=51.27 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999884
No 377
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.64 E-value=0.14 Score=54.20 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|+|+|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999873
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.63 E-value=0.11 Score=53.03 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..|.|.|+.|+||||+|+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.53 E-value=0.15 Score=51.33 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=21.6
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 380
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.51 E-value=0.11 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999987
No 381
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.51 E-value=0.12 Score=56.95 Aligned_cols=45 Identities=22% Similarity=0.197 Sum_probs=32.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+.++|.+..++.+...+.... ..-+.|+|++|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886665544443221 123889999999999999999884
No 382
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.50 E-value=0.13 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999883
No 383
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.47 E-value=0.21 Score=49.33 Aligned_cols=25 Identities=36% Similarity=0.344 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999874
No 384
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=90.44 E-value=0.21 Score=55.92 Aligned_cols=51 Identities=25% Similarity=0.293 Sum_probs=36.0
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRD--------DLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++|.++.++.+...+... ........+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 46889998888887666321 0000112345889999999999999999983
No 385
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.38 E-value=0.14 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=19.6
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999773
No 386
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.34 E-value=0.078 Score=53.66 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.32 E-value=0.16 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhh
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999865
No 388
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.29 E-value=0.67 Score=46.60 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=20.0
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-++|.|++|+||||+|+.+...
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999873
No 389
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.28 E-value=0.14 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999873
No 390
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.17 E-value=0.15 Score=51.70 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 391
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.16 E-value=0.098 Score=50.37 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
++++|+|..|+|||||++.+..-.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998743
No 392
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.09 E-value=0.13 Score=50.55 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEecCCCccHHHHHHHHhhch
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
+++|+|+.|+|||||++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999998743
No 393
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.07 E-value=0.12 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 394
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.03 E-value=0.16 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.323 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|.|+.|+||||||+.++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999987
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.01 E-value=0.3 Score=52.48 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|+|+|..|+|||||++.+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999987
No 396
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.94 E-value=1.2 Score=50.43 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=37.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAA 225 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~ 225 (1151)
.++.|.|.+|+||||+|..++.+.... ....++|++.. -+..++...++...
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 588999999999999999998854322 11457776654 45667777766544
No 397
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.92 E-value=0.12 Score=53.19 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999987
No 398
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.88 E-value=0.23 Score=49.59 Aligned_cols=22 Identities=32% Similarity=0.230 Sum_probs=20.5
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+++|+|+.|.|||||++.++.-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 8999999999999999999874
No 399
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=89.82 E-value=0.46 Score=55.71 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=53.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HHhc--
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSVDVNDLNLLQLQLE-NQLK-- 246 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~-~~l~-- 246 (1151)
+++.|.|.+|+||||++..+...... . ...+.+..... .....+.+.+.. .......+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~--~--g~~Vl~~ApT~----~Aa~~L~e~~~~--~a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES--L--GLEVGLCAPTG----KAARRLGEVTGR--TASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH--T--TCCEEEEESSH----HHHHHHHHHHTS--CEEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh--c--CCeEEEecCcH----HHHHHhHhhhcc--cHHHHHHHHcCCcchhhhhh
Confidence 38889999999999999999874332 2 23344433211 122222222211 0111111000000 0000
Q ss_pred ---CCceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecC
Q 044085 247 ---NKKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTR 286 (1151)
Q Consensus 247 ---~k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr 286 (1151)
.+-=+||+|++...+...+..+...++ .+.++|+.--
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 123489999997666667777776665 4567776544
No 400
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.80 E-value=0.41 Score=63.36 Aligned_cols=82 Identities=15% Similarity=0.060 Sum_probs=55.0
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCC------CCCcchHHHHHHH
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGS------VDVNDLNLLQLQL 241 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~l 241 (1151)
..++|.|+|++|+|||+||.++..... .+= ..++|+++.+.++... ++.++.. ......+...+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~--~~G-~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REG-KTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTT-CCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcC-CcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 346899999999999999999988433 332 5678888888777655 3333311 0122344555555
Q ss_pred HHHhc-CCceEEEEeCC
Q 044085 242 ENQLK-NKKFLLVLDDM 257 (1151)
Q Consensus 242 ~~~l~-~k~~LlVlDdv 257 (1151)
++..+ .+.-+||+|.+
T Consensus 1498 ~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHTCCSEEEESCG
T ss_pred HHHHhcCCCCEEEEcCh
Confidence 55543 56789999998
No 401
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.75 E-value=0.19 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.7
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..++|.|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999988
No 402
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.68 E-value=0.17 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.8
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.++++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 568999999999999999999874
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.61 E-value=0.17 Score=51.24 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|+|.|+.|+||||+|+.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 404
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.59 E-value=0.2 Score=52.49 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.7
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999864
No 405
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.58 E-value=0.17 Score=50.45 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=46.2
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHH----------hcCCCCCcchHHHHHH
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQA----------AVGSVDVNDLNLLQLQ 240 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~----------~~~~~~~~~~~~~~~~ 240 (1151)
+|.|.|++|+||+|.|+.+..... | ..++ .-+++++-+.. .......-..+.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g----~----~~is------tGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~l 67 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG----F----VHIS------TGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIAL 67 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC----C----EEEE------HHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC----C----eEEc------HHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHH
Confidence 578999999999999999987321 2 2232 23344432221 1111122233445566
Q ss_pred HHHHhcCCceEEEEeCCCCCChhhHHhh
Q 044085 241 LENQLKNKKFLLVLDDMWTENYDDWTNL 268 (1151)
Q Consensus 241 l~~~l~~k~~LlVlDdvw~~~~~~~~~l 268 (1151)
+.+.+....- +|||..-.. ..+.+.+
T Consensus 68 v~~~l~~~~~-~ilDGfPRt-~~Qa~~l 93 (206)
T 3sr0_A 68 IEEVFPKHGN-VIFDGFPRT-VKQAEAL 93 (206)
T ss_dssp HHHHCCSSSC-EEEESCCCS-HHHHHHH
T ss_pred HHHhhccCCc-eEecCCchh-HHHHHHH
Confidence 7777765443 688998543 3344444
No 406
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.58 E-value=0.14 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999873
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.50 E-value=0.18 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=20.1
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999987
No 408
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.45 E-value=0.32 Score=53.42 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 151 KEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++.+.+.... ....+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 344455554322 35679999999999999999998764
No 409
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.44 E-value=0.23 Score=59.18 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++|.+..++.+...+.... .+.|+|+.|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~--------~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR--------HVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC--------CEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCCC--------EEEEEeCCCCCHHHHHHHHhcc
Confidence 468899988888887776542 6899999999999999999883
No 410
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.39 E-value=0.18 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.8
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||.+.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.33 E-value=0.21 Score=52.66 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
++|.|+|+.|+||||||..++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHH
Confidence 5899999999999999999987
No 412
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.24 E-value=0.2 Score=53.41 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 413
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.23 E-value=0.12 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=15.9
Q ss_pred EEEEEecCCCccHHHHHHHHh-h
Q 044085 170 SVIPITGMGGLGKTTLAQLVF-N 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~-~ 191 (1151)
.+++|+|+.|+|||||++.+. .
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC-
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 589999999999999999998 5
No 414
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.19 E-value=0.18 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999987
No 415
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.06 E-value=0.19 Score=52.21 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999999999884
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.05 E-value=0.2 Score=50.96 Aligned_cols=21 Identities=43% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.04 E-value=0.18 Score=51.10 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999986
No 418
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.97 E-value=0.56 Score=50.07 Aligned_cols=51 Identities=16% Similarity=0.119 Sum_probs=33.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQA 224 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~ 224 (1151)
.+++|+|.+|+|||||++.++..... .-...++|+... .+..++.+.+...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e--~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLE--ESVEETAEDLIGL 86 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCc--CCHHHHHHHHHHH
Confidence 48999999999999999999885432 221245566543 2444554444433
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.91 E-value=0.12 Score=54.77 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=18.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+..+|+|.|..|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999873
No 420
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=88.88 E-value=0.87 Score=44.97 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEecCCCccHHHHHHHHhhch
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.|+|-|.-|+||||.++.+++..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47888999999999999999843
No 421
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.86 E-value=0.26 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.139 Sum_probs=21.8
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 357899999999999999999987
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.83 E-value=0.2 Score=50.51 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 423
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.74 E-value=0.26 Score=55.38 Aligned_cols=44 Identities=32% Similarity=0.356 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCCC---CCCCeEEEEEecCCCccHHHHHHHHhhch
Q 044085 150 DKEALVGLLRRDDLN---SGRGFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
..++|.+++.....+ ......+|+|+|.+|+||||+|..+....
T Consensus 77 ~~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 77 VYEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp HHHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666443110 11245689999999999999999988744
No 424
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.65 E-value=0.5 Score=50.77 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=30.2
Q ss_pred CCeEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCC
Q 044085 167 RGFSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDF 212 (1151)
Q Consensus 167 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~ 212 (1151)
...++|+|+|-||+||||+|..++.-.. ..= ..+.-|......
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G-~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILG-KRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTT-CCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCC-CeEEEEeCCCCC
Confidence 3567899999999999999999887432 221 456666665433
No 425
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.63 E-value=0.25 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.110 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998873
No 426
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.56 E-value=0.22 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|+.|+|||||++.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999873
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.54 E-value=0.23 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..|.|.|+.|+||||+|+.+...
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999873
No 428
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.52 E-value=0.21 Score=52.26 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3899999999999999999875
No 429
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.45 E-value=0.23 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999874
No 430
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.31 E-value=0.23 Score=51.83 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||.+.++.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999987
No 431
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=88.27 E-value=0.22 Score=48.86 Aligned_cols=22 Identities=41% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 432
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.26 E-value=0.29 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 433
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=88.21 E-value=0.2 Score=50.26 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3799999999999999999976
No 434
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.14 E-value=0.24 Score=50.90 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 435
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.11 E-value=0.26 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.526 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||.+.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999976
No 436
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.05 E-value=0.24 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||++.++.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4899999999999999999976
No 437
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.01 E-value=0.24 Score=51.66 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4899999999999999999987
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.00 E-value=0.26 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 439
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=87.95 E-value=1.5 Score=43.57 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
+.|+|-|..|+||||+++.+.+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 478999999999999999998843
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.92 E-value=0.25 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999976
No 441
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=87.87 E-value=0.26 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...+|.|+|++|+||||+|+.+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999873
No 442
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=87.86 E-value=0.25 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=21.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|+.|.|||||.+.++.-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 443
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.85 E-value=0.26 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999987
No 444
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.82 E-value=0.26 Score=50.87 Aligned_cols=22 Identities=45% Similarity=0.675 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 445
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=87.81 E-value=0.4 Score=49.55 Aligned_cols=38 Identities=21% Similarity=0.236 Sum_probs=27.8
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE 210 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~ 210 (1151)
.++.|.|.+|+||||||.+++.... ..= ..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~--~~~-~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGL--KMG-EPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHH--HTT-CCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH--hcC-CeEEEEEccC
Confidence 4899999999999999988876432 221 4677776544
No 446
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.78 E-value=1.3 Score=45.34 Aligned_cols=21 Identities=38% Similarity=0.433 Sum_probs=17.3
Q ss_pred EEEEecCCCccHHHHHHHHhh
Q 044085 171 VIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+.|+|..|+||||+...+.-
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHHh
Confidence 789999999999987665543
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.74 E-value=0.26 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 448
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=87.71 E-value=2.7 Score=47.83 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=35.2
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQ 223 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~ 223 (1151)
.++.|.|.+|+||||+|..++.+.... -...++|++.. -+..++...++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E--~s~~~l~~r~~~ 253 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLE--MSAQQLVMRMLC 253 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESS--SCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC--CCHHHHHHHHHH
Confidence 489999999999999999998854332 11357776654 345666666553
No 449
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=87.70 E-value=0.31 Score=46.21 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+-|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999875
No 450
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=87.67 E-value=2.3 Score=49.13 Aligned_cols=54 Identities=13% Similarity=0.024 Sum_probs=37.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAV 226 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~ 226 (1151)
-.++.|.|.+|+||||+|.+++.+.... ....++|++... +..++...++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~--s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIGLHN 295 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSS--CHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccC--CHHHHHHHHHHHHc
Confidence 3588999999999999999998854322 114577776544 46677776665443
No 451
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.66 E-value=0.33 Score=49.48 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhch
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
...+|+|.|+.|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999844
No 452
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.62 E-value=0.27 Score=51.38 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|+.|+|||||++.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999873
No 453
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=87.62 E-value=0.26 Score=48.96 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.1
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
No 454
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.60 E-value=0.65 Score=46.35 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=53.6
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHHhcCCC------CCc--chHHHHHHHH
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQAAVGSV------DVN--DLNLLQLQLE 242 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~~~~~~------~~~--~~~~~~~~l~ 242 (1151)
.|.+.|.||+||||+|..+...... ..+ .+..+.+...-+... ...+..+.... ... .... +.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~-~G~--~V~v~d~D~q~~~~~--~al~~gl~~~~~~~~~~~~~~~~e~~----l~ 78 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR-QGV--RVMAGVVETHGRAET--EALLNGLPQQPLLRTEYRGMTLEEMD----LD 78 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTC--CEEEEECCCTTCHHH--HHHHTTSCBCCCEEEEETTEEEEECC----HH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-CCC--CEEEEEeCCCCChhH--HHHhcCccccCcceeecCCccccccc----HH
Confidence 4778899999999999888874322 223 344445543322221 11122221100 000 0011 12
Q ss_pred HHhcCCceEEEEeCCCCC------ChhhHHhhhccccCCCCCcEEEEecCcc
Q 044085 243 NQLKNKKFLLVLDDMWTE------NYDDWTNLCKPFKAGLPGSKIIVTTRNE 288 (1151)
Q Consensus 243 ~~l~~k~~LlVlDdvw~~------~~~~~~~l~~~l~~~~~gs~iivTtr~~ 288 (1151)
..+..+.=++|+|++-.. ....|..+...++ .|-.|++|+.-.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlq 127 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQ 127 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGG
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEcccc
Confidence 222235679999987432 1235666655443 355788887644
No 455
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=87.60 E-value=0.3 Score=47.52 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 456
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=87.46 E-value=0.92 Score=51.37 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=34.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC-HHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD-AVGITKVI 221 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~-~~~~~~~i 221 (1151)
.-++|.|..|+|||+|++++.+.. +- +..+++-+.+..+ ..++.+++
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~~----~~-~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKWS----DA-QVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHHS----SC-SEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhcc----CC-CEEEEEEecccHHHHHHHHHHH
Confidence 468999999999999999987732 22 6678888887665 34454543
No 457
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.44 E-value=0.31 Score=50.72 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=56.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCC--HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHhcC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFD--AVGITKVILQAAVGSVDVNDLNLLQLQLENQLKN 247 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~l~~ 247 (1151)
.+++|+|+.|+||||+++.+..-. ...+ ...+++.- ++.. .... ..++.+.....+. ......+...+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~--~~~~-~G~I~~~g-~~i~~~~~~~-~~~v~q~~~gl~~---~~l~~~la~aL~~ 97 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI--NQTK-SYHIITIE-DPIEYVFKHK-KSIVNQREVGEDT---KSFADALRAALRE 97 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH--HHHC-CCEEEEEE-SSCCSCCCCS-SSEEEEEEBTTTB---SCHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC--CCCC-CCEEEEcC-CcceeecCCc-ceeeeHHHhCCCH---HHHHHHHHHHHhh
Confidence 589999999999999999988732 2222 22332211 1100 0000 0000000000011 1224556666666
Q ss_pred CceEEEEeCCCCCChhhHHhhhccccCCCCCcEEEEecCccccc
Q 044085 248 KKFLLVLDDMWTENYDDWTNLCKPFKAGLPGSKIIVTTRNEDVS 291 (1151)
Q Consensus 248 k~~LlVlDdvw~~~~~~~~~l~~~l~~~~~gs~iivTtr~~~v~ 291 (1151)
++=+|++|..- +......+.... ..|.-|++||...++.
T Consensus 98 ~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 98 DPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAI 136 (261)
T ss_dssp CCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHH
T ss_pred CCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHH
Confidence 77789999985 334433333322 2466788888766543
No 458
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=87.44 E-value=0.28 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 459
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.39 E-value=0.28 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||++.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 460
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.37 E-value=0.28 Score=51.39 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||++.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999976
No 461
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.28 E-value=0.72 Score=51.17 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=50.6
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhccCCC-ceEEEEeCCCCC-HHHHHHHHHHHh--c------CCCCCcchHH----
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEEHFPD-FRAWAYVSEDFD-AVGITKVILQAA--V------GSVDVNDLNL---- 236 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~-~~~wv~vs~~~~-~~~~~~~i~~~~--~------~~~~~~~~~~---- 236 (1151)
-++|.|..|+|||+|+.++.+.......-++ ..+++-+.+..+ ..++.+++...= . ...+......
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 4689999999999999999885443111111 566777776543 455555544321 0 1111111111
Q ss_pred -HHHHHHHHhc---CCceEEEEeCC
Q 044085 237 -LQLQLENQLK---NKKFLLVLDDM 257 (1151)
Q Consensus 237 -~~~~l~~~l~---~k~~LlVlDdv 257 (1151)
..-.+.++++ ++.+|+++||+
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1223445543 78999999999
No 462
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=87.11 E-value=0.29 Score=51.10 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999876
No 463
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.10 E-value=0.29 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 38999999999999999999873
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.04 E-value=0.32 Score=49.91 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+|+|+|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999987
No 465
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.02 E-value=0.33 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..|+|.|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 466
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.02 E-value=0.3 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.+++|+|+.|.|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999873
No 467
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.97 E-value=0.31 Score=51.64 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 5899999999999999999987
No 468
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.72 E-value=0.4 Score=46.94 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 469
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.69 E-value=3.4 Score=46.64 Aligned_cols=50 Identities=14% Similarity=0.140 Sum_probs=35.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCCCCCHHHHHHHHHHH
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSEDFDAVGITKVILQA 224 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~~~~~~~~~~~i~~~ 224 (1151)
.++.|.|.+|+||||+|.+++.+.... ...++|++.. -+..++...++..
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS--SCTTHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC--CCHHHHHHHHHHH
Confidence 589999999999999999998865433 1456666544 4455666666554
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.54 E-value=0.34 Score=53.22 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhh
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
...+++|+|+.|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345899999999999999999997
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.53 E-value=0.33 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.637 Sum_probs=19.7
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 472
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.32 E-value=1.1 Score=44.92 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.0
Q ss_pred eEEEEEecCCCccHHHHHHHHhhch
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
...|.|.|+.|+||||+++.+.+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998844
No 473
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=86.20 E-value=0.96 Score=50.25 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=34.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 143 EVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 143 ~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.++|....+.++.+.+..-.. .... |.|.|..|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~---~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC---AECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT---CCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhcC---CCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 567777777777776655332 2333 489999999999999999873
No 474
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=86.19 E-value=0.75 Score=48.21 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=27.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhchhhhccCCCceEEEEeCC
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDVRVEEHFPDFRAWAYVSE 210 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~f~~~~~wv~vs~ 210 (1151)
++|+|.|-||+||||+|..+..-.. ..= ..+.-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G-~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMG-KTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTT-CCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCC-CcEEEEcCCC
Confidence 5788889999999999999887433 221 3566666653
No 475
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.07 E-value=0.47 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
--|.|+|.+|+|||||+..+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=85.97 E-value=0.38 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999987
No 477
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=85.97 E-value=0.74 Score=51.06 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=50.3
Q ss_pred EEEEecCCCccHHHHHHHHhhchhhhc-------cCCC-ceEEEEeCCCCC-HHHHHHHHHHH--hc------CCCCCcc
Q 044085 171 VIPITGMGGLGKTTLAQLVFNDVRVEE-------HFPD-FRAWAYVSEDFD-AVGITKVILQA--AV------GSVDVND 233 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~~~~~~-------~f~~-~~~wv~vs~~~~-~~~~~~~i~~~--~~------~~~~~~~ 233 (1151)
-++|.|..|+|||+|+.++.+...... .-++ ..+++-+.+..+ ..++.+++.+. +. ...+...
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p~ 228 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPT 228 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSCT
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCCH
Confidence 568999999999999999988654310 1112 566777776543 44455554332 10 1111111
Q ss_pred hHH-----HHHHHHHHhc---CCceEEEEeCC
Q 044085 234 LNL-----LQLQLENQLK---NKKFLLVLDDM 257 (1151)
Q Consensus 234 ~~~-----~~~~l~~~l~---~k~~LlVlDdv 257 (1151)
... ..-.+.++++ ++..|+++||+
T Consensus 229 ~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 229 IERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 211 1223445543 68999999999
No 478
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=85.95 E-value=0.37 Score=47.31 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
--|.|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 357899999999999999998753
No 479
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.95 E-value=0.36 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.++.|+|.+|+||||||..++..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999999873
No 480
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.85 E-value=0.38 Score=50.03 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 3899999999999999999987
No 481
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.83 E-value=0.3 Score=51.14 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
....|+|.|..|+||||+|+.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4468999999999999999988873
No 482
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.78 E-value=0.7 Score=47.57 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=29.0
Q ss_pred hHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 150 DKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-...+..|+.... +....|.++|++|+|||.+|..+++.
T Consensus 89 ~~~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3445777776531 12346899999999999999999883
No 483
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.78 E-value=0.34 Score=51.53 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=20.3
Q ss_pred EEEEEecCCCccHHHHHHHHhh
Q 044085 170 SVIPITGMGGLGKTTLAQLVFN 191 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~ 191 (1151)
.+++|+|+.|.|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4899999999999999999876
No 484
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.74 E-value=0.38 Score=50.33 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.1
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999873
No 485
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=85.48 E-value=0.41 Score=46.83 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999888764
No 486
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=85.46 E-value=1.3 Score=49.85 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=49.2
Q ss_pred EEEEEecCCCccHHHHH-HHHhhchhhhccCCC-ceEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCcchHH--
Q 044085 170 SVIPITGMGGLGKTTLA-QLVFNDVRVEEHFPD-FRAWAYVSEDFD-AVGITKVILQAAV--------GSVDVNDLNL-- 236 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~~wv~vs~~~~-~~~~~~~i~~~~~--------~~~~~~~~~~-- 236 (1151)
.-++|.|..|+|||+|| ..+.+.. .- + ..+++-+.+..+ ..++.+.+...-. ...+......
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~----~~-dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 250 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK----GQ-GVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYI 250 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT----TT-TEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh----cC-CcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHH
Confidence 35799999999999996 5777743 12 5 357788887654 4455555544211 1111111111
Q ss_pred ---HHHHHHHHh--cCCceEEEEeCC
Q 044085 237 ---LQLQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 237 ---~~~~l~~~l--~~k~~LlVlDdv 257 (1151)
..-.+.+++ +++..|+++||+
T Consensus 251 a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 251 APYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 112233444 478999999998
No 487
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=85.44 E-value=0.46 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999874
No 488
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.44 E-value=0.48 Score=45.84 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.5
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
+...|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999774
No 489
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.39 E-value=0.42 Score=45.59 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.-|+|+|.+|+|||||+..+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 457899999999999999998753
No 490
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=85.36 E-value=0.65 Score=51.16 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=32.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCeEEEEEecCCCccHHHHHHHHhhc
Q 044085 142 DEVYGREKDKEALVGLLRRDDLNSGRGFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 142 ~~~vgr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++|....+.++.+.+..-.. ... -|.|.|..|+||+++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~---~~~-~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK---SKA-PVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT---SCS-CEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc---cch-hheEEeCCCchHHHHHHHHHHh
Confidence 4577887777666665543221 112 3669999999999999999874
No 491
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=85.35 E-value=0.4 Score=51.66 Aligned_cols=25 Identities=40% Similarity=0.591 Sum_probs=22.6
Q ss_pred CeEEEEEecCCCccHHHHHHHHhhc
Q 044085 168 GFSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 168 ~~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999999864
No 492
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=85.34 E-value=0.43 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.056 Sum_probs=19.9
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
.++.|+|+.|+||||++..++...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997766643
No 493
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.28 E-value=0.55 Score=45.23 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhch
Q 044085 170 SVIPITGMGGLGKTTLAQLVFNDV 193 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~~ 193 (1151)
--|+|+|.+|+|||||+.++....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 467899999999999999997743
No 494
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=85.20 E-value=0.41 Score=46.75 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred eEEEEEecCCCccHHHHHHHHhhc
Q 044085 169 FSVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 169 ~~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
.--|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999874
No 495
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.19 E-value=0.43 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.4
Q ss_pred EEEEEecCCCccHHHHHHHHhhc
Q 044085 170 SVIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
--|+|+|.+|+|||||...+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999875
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.18 E-value=0.44 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 497
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.11 E-value=0.43 Score=45.74 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 498
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=85.07 E-value=1.8 Score=48.48 Aligned_cols=83 Identities=13% Similarity=0.177 Sum_probs=48.1
Q ss_pred EEEEEecCCCccHHHHH-HHHhhchhhhccCCC-ceEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCcchHH--
Q 044085 170 SVIPITGMGGLGKTTLA-QLVFNDVRVEEHFPD-FRAWAYVSEDFD-AVGITKVILQAAV--------GSVDVNDLNL-- 236 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~~wv~vs~~~~-~~~~~~~i~~~~~--------~~~~~~~~~~-- 236 (1151)
.-++|.|..|+|||+|| ..+.+.. +- + .++++-+.+..+ ..++.+++.+.=. ...+......
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~~----~~-dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~ 237 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQR----DS-GIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYL 237 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTTS----SS-SCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhhc----cC-CceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHH
Confidence 35789999999999996 5666631 22 4 357888887654 4455555443211 1111111111
Q ss_pred ---HHHHHHHHh--cCCceEEEEeCC
Q 044085 237 ---LQLQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 237 ---~~~~l~~~l--~~k~~LlVlDdv 257 (1151)
....+.+++ +++..||++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 238 APYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 111223333 589999999998
No 499
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=85.03 E-value=0.8 Score=51.42 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=48.8
Q ss_pred EEEEEecCCCccHHHHH-HHHhhchhhhccCCC-ceEEEEeCCCCC-HHHHHHHHHHHhc--------CCCCCcchHH--
Q 044085 170 SVIPITGMGGLGKTTLA-QLVFNDVRVEEHFPD-FRAWAYVSEDFD-AVGITKVILQAAV--------GSVDVNDLNL-- 236 (1151)
Q Consensus 170 ~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~f~~-~~~wv~vs~~~~-~~~~~~~i~~~~~--------~~~~~~~~~~-- 236 (1151)
.-++|.|..|+|||+|| ..+.+.. +- + ..+++-+.+..+ ..++.+++...-. ...+......
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~-dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~ 237 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK----GQ-DVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYL 237 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG----SC-SEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh----cC-CcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHH
Confidence 35799999999999996 5777743 22 5 357788887654 3445555544211 1111111111
Q ss_pred ---HHHHHHHHh--cCCceEEEEeCC
Q 044085 237 ---LQLQLENQL--KNKKFLLVLDDM 257 (1151)
Q Consensus 237 ---~~~~l~~~l--~~k~~LlVlDdv 257 (1151)
..-.+.+++ +++..|+++||+
T Consensus 238 a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 238 APYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 112233444 478999999998
No 500
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.02 E-value=0.38 Score=45.90 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEecCCCccHHHHHHHHhhc
Q 044085 171 VIPITGMGGLGKTTLAQLVFND 192 (1151)
Q Consensus 171 vi~I~G~~GiGKTtLa~~v~~~ 192 (1151)
-|+|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4689999999999999998753
Done!