Query 044089
Match_columns 521
No_of_seqs 251 out of 1699
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:20:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 2.8E-50 6E-55 415.6 30.2 357 158-517 33-403 (437)
2 KOG1304 Amino acid transporter 100.0 5.7E-48 1.2E-52 391.7 32.8 354 159-518 43-417 (449)
3 PTZ00206 amino acid transporte 100.0 1.1E-47 2.4E-52 406.8 32.4 352 160-512 57-426 (467)
4 PF01490 Aa_trans: Transmembra 100.0 1.6E-46 3.5E-51 393.9 2.8 355 161-519 1-378 (409)
5 PLN03074 auxin influx permease 100.0 1.3E-41 2.8E-46 359.1 28.7 345 160-516 43-404 (473)
6 KOG4303 Vesicular inhibitory a 100.0 1E-39 2.2E-44 312.4 12.9 355 157-520 111-487 (524)
7 KOG1305 Amino acid transporter 100.0 2.8E-38 6.2E-43 324.9 20.0 354 160-515 3-375 (411)
8 COG0814 SdaC Amino acid permea 100.0 2.2E-29 4.8E-34 262.4 30.2 358 158-519 4-387 (415)
9 KOG1287 Amino acid transporter 100.0 1.3E-29 2.7E-34 259.9 20.8 348 155-519 6-390 (479)
10 TIGR00837 araaP aromatic amino 99.9 2.6E-24 5.7E-29 223.7 27.1 340 168-516 2-360 (381)
11 PF03222 Trp_Tyr_perm: Tryptop 99.9 2E-23 4.4E-28 216.2 31.1 348 161-518 1-368 (394)
12 PRK09664 tryptophan permease T 99.9 4.9E-22 1.1E-26 204.1 30.1 345 161-515 7-374 (415)
13 PRK10483 tryptophan permease; 99.9 7.2E-22 1.6E-26 203.0 31.3 346 159-515 7-373 (414)
14 PRK15132 tyrosine transporter 99.9 2.6E-21 5.6E-26 199.8 29.3 343 164-516 4-363 (403)
15 TIGR00814 stp serine transport 99.9 6.6E-19 1.4E-23 182.3 29.8 342 165-512 5-376 (397)
16 PRK13629 threonine/serine tran 99.8 2.8E-18 6E-23 176.5 30.6 341 166-512 22-412 (443)
17 PRK10655 potE putrescine trans 99.8 6.4E-17 1.4E-21 171.4 29.7 233 159-403 4-247 (438)
18 TIGR00930 2a30 K-Cl cotranspor 99.8 2E-16 4.4E-21 179.4 34.7 242 158-403 73-338 (953)
19 PRK10435 cadB lysine/cadaverin 99.8 1.3E-16 2.8E-21 168.8 31.0 238 158-405 2-247 (435)
20 PRK15049 L-asparagine permease 99.8 2.1E-16 4.5E-21 169.7 31.8 347 157-515 24-406 (499)
21 TIGR00906 2A0303 cationic amin 99.8 1.9E-16 4.2E-21 171.7 31.0 352 158-516 25-412 (557)
22 PRK10644 arginine:agmatin anti 99.8 1.7E-16 3.8E-21 168.4 29.6 236 158-405 5-251 (445)
23 PRK11021 putative transporter; 99.8 5.2E-16 1.1E-20 163.0 32.7 340 163-516 1-363 (410)
24 PRK10249 phenylalanine transpo 99.8 3.8E-16 8.2E-21 166.2 30.8 237 158-405 18-269 (458)
25 TIGR01773 GABAperm gamma-amino 99.8 7.7E-16 1.7E-20 163.8 32.2 238 157-405 8-261 (452)
26 PRK10746 putative transport pr 99.8 1.2E-15 2.5E-20 162.5 33.1 237 158-405 7-260 (461)
27 PRK11049 D-alanine/D-serine/gl 99.8 1.1E-15 2.4E-20 163.3 32.9 235 158-403 17-269 (469)
28 TIGR00911 2A0308 L-type amino 99.8 4.7E-16 1E-20 167.6 29.6 238 157-405 38-295 (501)
29 TIGR00909 2A0306 amino acid tr 99.8 4.3E-16 9.4E-21 164.7 28.5 240 160-403 2-253 (429)
30 PRK11357 frlA putative fructos 99.8 4.9E-16 1.1E-20 165.0 28.0 232 158-403 5-253 (445)
31 PRK11387 S-methylmethionine tr 99.7 1.3E-15 2.7E-20 162.9 30.5 237 158-405 11-266 (471)
32 PRK10580 proY putative proline 99.7 1.2E-14 2.6E-19 154.9 34.7 233 158-401 6-255 (457)
33 PRK10238 aromatic amino acid t 99.7 2.6E-15 5.6E-20 159.8 29.4 231 158-399 9-254 (456)
34 TIGR00905 2A0302 transporter, 99.7 1.5E-15 3.3E-20 162.3 27.5 236 160-405 6-258 (473)
35 PRK10836 lysine transporter; P 99.7 9.5E-15 2.1E-19 156.9 33.4 238 157-405 11-265 (489)
36 TIGR00912 2A0309 spore germina 99.7 4.2E-15 9.1E-20 153.4 28.8 331 162-515 2-354 (359)
37 TIGR03810 arg_ornith_anti argi 99.7 2.4E-15 5.1E-20 160.7 27.8 344 161-516 1-381 (468)
38 TIGR00908 2A0305 ethanolamine 99.7 1.7E-14 3.6E-19 153.2 30.2 229 158-400 4-246 (442)
39 COG1113 AnsP Gamma-aminobutyra 99.7 9.2E-15 2E-19 148.5 26.2 343 158-515 10-389 (462)
40 TIGR00913 2A0310 amino acid pe 99.7 1.4E-14 2.9E-19 155.4 29.1 231 160-401 1-253 (478)
41 PRK10197 gamma-aminobutyrate t 99.7 2.4E-14 5.2E-19 152.0 29.2 331 171-515 2-368 (446)
42 PF13520 AA_permease_2: Amino 99.6 1.4E-13 3E-18 145.3 29.4 235 163-407 1-248 (426)
43 COG0531 PotE Amino acid transp 99.6 3.7E-12 8E-17 135.9 29.8 242 157-406 8-262 (466)
44 TIGR03428 ureacarb_perm permea 99.5 1.5E-11 3.2E-16 131.7 32.6 245 158-405 10-273 (475)
45 KOG1286 Amino acid transporter 99.5 5E-13 1.1E-17 142.9 20.5 356 157-515 26-423 (554)
46 COG0833 LysP Amino acid transp 99.5 2E-11 4.4E-16 126.8 29.2 346 158-514 41-427 (541)
47 TIGR00907 2A0304 amino acid pe 99.5 3.2E-11 6.9E-16 129.5 30.8 245 158-405 9-277 (482)
48 PRK15238 inner membrane transp 99.5 4.5E-11 9.7E-16 128.7 31.8 238 160-402 6-268 (496)
49 TIGR03813 put_Glu_GABA_T putat 99.4 1.7E-10 3.6E-15 123.7 32.0 236 162-406 2-255 (474)
50 TIGR00910 2A0307_GadC glutamat 99.4 8.8E-11 1.9E-15 126.5 28.8 229 160-400 3-249 (507)
51 PF03845 Spore_permease: Spore 99.4 1.9E-10 4.1E-15 116.9 26.9 278 162-457 1-296 (320)
52 PF00324 AA_permease: Amino ac 99.3 1.2E-11 2.7E-16 132.5 13.3 232 171-408 5-263 (478)
53 KOG3832 Predicted amino acid t 99.1 1.4E-09 2.9E-14 98.7 11.5 214 162-376 11-303 (319)
54 KOG1289 Amino acid transporter 98.9 1.3E-06 2.8E-11 91.3 27.6 172 347-518 253-447 (550)
55 COG3949 Uncharacterized membra 98.9 1.5E-06 3.3E-11 85.3 26.4 224 166-405 6-238 (349)
56 TIGR00800 ncs1 NCS1 nucleoside 98.7 2.6E-05 5.7E-10 82.8 28.6 296 160-457 11-331 (442)
57 TIGR00796 livcs branched-chain 98.6 0.00011 2.4E-09 75.7 29.2 211 171-401 3-241 (378)
58 PRK12488 acetate permease; Pro 98.6 0.00017 3.8E-09 78.6 32.4 235 158-405 64-323 (549)
59 PRK11375 allantoin permease; P 98.5 0.00014 3E-09 78.0 29.5 274 224-504 89-392 (484)
60 TIGR00813 sss transporter, SSS 98.5 0.00022 4.7E-09 75.0 30.3 149 160-320 2-152 (407)
61 TIGR02119 panF sodium/pantothe 98.5 0.00034 7.3E-09 75.1 32.2 234 158-403 37-293 (471)
62 COG1457 CodB Purine-cytosine p 98.5 0.00018 4E-09 74.8 28.2 263 228-510 85-357 (442)
63 PRK09442 panF sodium/panthothe 98.5 0.00079 1.7E-08 72.5 34.0 233 158-402 38-293 (483)
64 TIGR02358 thia_cytX probable h 98.4 0.00038 8.3E-09 72.5 29.2 262 224-504 58-323 (386)
65 TIGR02711 symport_actP cation/ 98.4 0.00094 2E-08 72.9 32.1 232 158-402 64-317 (549)
66 PF00474 SSF: Sodium:solute sy 98.4 0.00015 3.3E-09 76.1 25.3 149 160-320 5-156 (406)
67 PRK09395 actP acetate permease 98.3 0.0013 2.8E-08 71.9 32.1 151 158-320 66-218 (551)
68 COG0591 PutP Na+/proline sympo 98.3 0.0025 5.3E-08 68.6 32.6 150 158-319 35-190 (493)
69 PRK15419 proline:sodium sympor 98.2 0.0047 1E-07 66.8 32.5 151 158-320 37-196 (502)
70 PRK11017 codB cytosine permeas 98.2 0.0026 5.7E-08 66.7 29.1 258 224-504 71-332 (404)
71 TIGR02121 Na_Pro_sym sodium/pr 98.1 0.016 3.4E-07 62.5 33.6 153 158-321 33-193 (487)
72 TIGR03648 Na_symport_lg probab 98.1 0.012 2.6E-07 64.4 32.4 150 158-319 29-180 (552)
73 COG1953 FUI1 Cytosine/uracil/t 98.0 0.011 2.4E-07 62.1 29.9 292 224-517 103-417 (497)
74 KOG2082 K+/Cl- cotransporter K 98.0 0.002 4.3E-08 69.5 24.6 111 161-272 113-228 (1075)
75 KOG1288 Amino acid transporter 98.0 0.0003 6.4E-09 75.0 17.3 218 183-402 89-351 (945)
76 PRK10484 putative transporter; 97.9 0.023 4.9E-07 61.8 31.8 161 158-321 35-198 (523)
77 TIGR00835 agcS amino acid carr 97.9 0.0089 1.9E-07 62.5 26.1 147 160-319 44-200 (425)
78 PF02133 Transp_cyt_pur: Perme 97.7 0.00052 1.1E-08 72.9 14.4 339 160-504 6-367 (440)
79 COG0733 Na+-dependent transpor 97.2 0.16 3.5E-06 52.9 23.8 235 162-401 8-270 (439)
80 PF01235 Na_Ala_symp: Sodium:a 97.1 0.49 1.1E-05 49.4 27.0 89 157-245 13-110 (416)
81 PHA02764 hypothetical protein; 97.1 0.041 8.9E-07 54.2 17.1 88 158-249 9-102 (399)
82 PF00209 SNF: Sodium:neurotran 96.7 0.41 9E-06 52.1 23.4 67 164-231 6-78 (523)
83 KOG2083 Na+/K+ symporter [Inor 96.6 0.0068 1.5E-07 64.3 8.4 222 163-398 30-276 (643)
84 COG1914 MntH Mn2+ and Fe2+ tra 96.6 1.2 2.6E-05 46.6 28.0 274 224-515 77-378 (416)
85 PRK00701 manganese transport p 96.4 1.8 3.8E-05 46.0 31.8 93 176-269 36-139 (439)
86 PF02554 CstA: Carbon starvati 96.4 0.53 1.1E-05 47.9 19.6 105 163-267 52-157 (376)
87 PF01566 Nramp: Natural resist 95.7 2.9 6.4E-05 43.0 27.8 103 200-314 19-123 (358)
88 KOG2466 Uridine permease/thiam 95.4 1 2.3E-05 47.1 17.1 291 158-456 51-378 (572)
89 PRK15015 carbon starvation pro 95.4 0.36 7.8E-06 52.5 14.2 98 168-265 88-186 (701)
90 PF05525 Branch_AA_trans: Bran 95.2 0.64 1.4E-05 48.8 15.3 79 222-311 259-337 (427)
91 TIGR00796 livcs branched-chain 94.8 0.59 1.3E-05 48.5 13.7 51 221-271 252-302 (378)
92 COG1966 CstA Carbon starvation 94.8 1.4 3E-05 47.0 16.3 103 164-266 53-156 (575)
93 TIGR01197 nramp NRAMP (natural 94.3 8.1 0.00017 40.3 30.1 62 449-511 321-384 (390)
94 COG1115 AlsT Na+/alanine sympo 93.8 10 0.00022 39.8 26.4 318 158-495 58-420 (452)
95 COG1114 BrnQ Branched-chain am 93.1 2.2 4.7E-05 44.1 13.6 129 172-311 207-339 (431)
96 COG4147 DhlC Predicted symport 93.0 14 0.0003 39.1 25.9 173 219-402 99-293 (529)
97 PRK09928 choline transport pro 92.5 21 0.00046 39.8 21.7 24 160-183 90-113 (679)
98 KOG3659 Sodium-neurotransmitte 92.4 19 0.00041 39.2 20.4 86 164-251 83-174 (629)
99 KOG3660 Sodium-neurotransmitte 91.4 24 0.00053 39.1 20.1 63 164-227 39-107 (629)
100 PRK15433 branched-chain amino 90.6 2.5 5.5E-05 44.5 11.2 106 190-308 230-337 (439)
101 KOG2349 Na+:iodide/myo-inosito 88.4 2.6 5.6E-05 45.8 9.5 229 160-404 44-298 (585)
102 KOG1289 Amino acid transporter 86.4 14 0.0003 39.7 13.3 81 195-275 288-376 (550)
103 PF02028 BCCT: BCCT family tra 85.2 59 0.0013 35.0 30.3 28 158-185 70-97 (485)
104 PF05525 Branch_AA_trans: Bran 81.6 75 0.0016 33.6 22.6 75 165-245 5-83 (427)
105 KOG1291 Mn2+ and Fe2+ transpor 73.4 1.3E+02 0.0028 31.9 25.8 60 457-516 352-413 (503)
106 TIGR00907 2A0304 amino acid pe 70.9 1.5E+02 0.0033 31.6 17.2 47 225-271 290-337 (482)
107 PRK09950 putative transporter; 70.7 1.6E+02 0.0035 31.9 28.0 163 160-329 81-274 (506)
108 TIGR00842 bcct choline/carniti 69.4 1.6E+02 0.0035 31.4 23.8 24 160-183 34-57 (453)
109 PLN03223 Polycystin cation cha 65.9 2E+02 0.0044 34.7 15.6 21 343-363 1357-1377(1634)
110 PLN02680 carbon-monoxide oxyge 64.3 81 0.0018 30.3 10.5 97 342-444 46-142 (232)
111 TIGR03750 conj_TIGR03750 conju 55.1 1.3E+02 0.0027 25.4 8.9 67 156-222 11-79 (111)
112 KOG1287 Amino acid transporter 54.6 2E+02 0.0044 30.8 12.5 103 225-328 274-381 (479)
113 KOG2141 Protein involved in hi 53.0 9.7 0.00021 41.9 2.4 13 170-182 333-345 (822)
114 cd08762 Cyt_b561_CYBASC3 Verte 52.0 1.4E+02 0.0031 27.4 9.5 109 332-444 24-133 (179)
115 PLN00151 potassium transporter 48.8 4.7E+02 0.01 30.1 18.9 35 459-493 466-500 (852)
116 TIGR00909 2A0306 amino acid tr 48.6 3.4E+02 0.0073 28.3 19.0 47 225-271 265-311 (429)
117 PF12794 MscS_TM: Mechanosensi 44.2 1.5E+02 0.0033 30.3 9.5 129 378-519 46-184 (340)
118 PF13491 DUF4117: Domain of un 43.8 2.4E+02 0.0052 25.2 10.8 26 376-401 1-26 (171)
119 KOG1305 Amino acid transporter 42.7 3.2E+02 0.007 28.8 11.8 152 300-453 147-313 (411)
120 PRK13183 psbN photosystem II r 41.9 23 0.0005 24.6 2.1 31 378-408 4-34 (46)
121 PF11457 DUF3021: Protein of u 39.7 1.4E+02 0.0031 25.6 7.5 33 372-404 1-33 (136)
122 PF05642 Sporozoite_P67: Sporo 39.5 36 0.00078 36.5 4.1 13 55-67 153-166 (727)
123 COG0814 SdaC Amino acid permea 37.9 5E+02 0.011 27.3 17.5 159 350-513 194-374 (415)
124 PHA02664 hypothetical protein; 37.8 30 0.00065 34.3 3.0 12 6-17 427-438 (534)
125 PF02468 PsbN: Photosystem II 37.8 31 0.00067 23.7 2.2 28 381-408 4-31 (43)
126 PF10488 PP1c_bdg: Phosphatase 37.1 16 0.00035 36.2 1.0 15 57-72 64-78 (307)
127 CHL00020 psbN photosystem II p 36.5 22 0.00048 24.3 1.3 29 380-408 3-31 (43)
128 KOG2466 Uridine permease/thiam 35.1 1.4E+02 0.0031 31.9 7.5 157 234-398 339-514 (572)
129 KOG0943 Predicted ubiquitin-pr 33.2 26 0.00056 41.0 1.9 22 160-181 1940-1961(3015)
130 PRK15433 branched-chain amino 32.6 6.3E+02 0.014 26.8 25.3 74 164-243 9-86 (439)
131 KOG1277 Endosomal membrane pro 32.1 6.5E+02 0.014 26.8 12.9 16 387-402 562-577 (593)
132 PF08016 PKD_channel: Polycyst 30.3 6.6E+02 0.014 26.3 16.4 53 342-398 361-413 (425)
133 PF05781 MRVI1: MRVI1 protein; 29.3 1.2E+02 0.0027 32.6 6.1 38 183-221 472-510 (538)
134 PRK03356 L-carnitine/gamma-but 29.0 7.7E+02 0.017 26.7 27.6 25 160-184 83-107 (504)
135 PF09125 COX2-transmemb: Cytoc 28.4 94 0.002 20.4 3.1 21 190-210 13-35 (38)
136 COG1292 BetT Choline-glycine b 28.0 8.2E+02 0.018 26.7 23.5 25 160-184 85-109 (537)
137 PF04835 Pox_A9: A9 protein co 27.9 1.6E+02 0.0034 21.2 4.4 30 380-409 23-52 (54)
138 TIGR00910 2A0307_GadC glutamat 27.7 8E+02 0.017 26.5 14.5 29 355-384 308-336 (507)
139 COG4145 PanF Na+/panthothenate 27.6 7.2E+02 0.016 25.9 13.0 187 176-405 243-445 (473)
140 PF11711 Tim54: Inner membrane 27.5 65 0.0014 33.4 3.6 35 57-91 271-307 (382)
141 KOG1278 Endosomal membrane pro 26.5 3.4E+02 0.0073 29.6 8.6 192 190-403 361-613 (628)
142 KOG4112 Signal peptidase subun 25.6 1.5E+02 0.0033 23.9 4.6 40 473-512 37-76 (101)
143 PF07415 Herpes_LMP2: Gammaher 24.3 26 0.00056 35.2 0.1 9 183-191 126-134 (489)
144 TIGR00905 2A0302 transporter, 23.3 9.1E+02 0.02 25.6 19.0 45 226-270 270-314 (473)
145 PF05756 S-antigen: S-antigen 23.0 36 0.00077 26.3 0.6 13 29-41 68-80 (94)
146 PTZ00415 transmission-blocking 22.7 44 0.00096 40.7 1.5 15 360-374 642-656 (2849)
147 PHA03132 thymidine kinase; Pro 22.4 6.5E+02 0.014 27.8 10.2 16 165-180 213-228 (580)
148 KOG0943 Predicted ubiquitin-pr 21.8 68 0.0015 37.8 2.6 6 230-235 2061-2066(3015)
149 PF05915 DUF872: Eukaryotic pr 21.2 4.6E+02 0.01 22.2 7.0 65 164-229 40-112 (115)
150 PF10329 DUF2417: Region of un 21.1 7.5E+02 0.016 23.8 9.7 49 163-214 104-155 (232)
151 PRK09575 vmrA multidrug efflux 21.0 9.8E+02 0.021 25.1 11.7 23 489-511 188-210 (453)
152 KOG3130 Uncharacterized conser 20.4 72 0.0016 32.8 2.3 8 73-80 355-362 (514)
153 PF01235 Na_Ala_symp: Sodium:a 20.3 6.8E+02 0.015 26.4 9.5 67 203-269 267-338 (416)
154 PF08595 RXT2_N: RXT2-like, N- 20.2 43 0.00092 29.8 0.6 7 84-90 106-112 (149)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-50 Score=415.61 Aligned_cols=357 Identities=37% Similarity=0.662 Sum_probs=319.4
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCC-----hHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTT-----YPDVGQ 231 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~s-----Y~~i~~ 231 (521)
..+++.|+++++++++|.++|.|+|++|||++++||+ |++++++++++++||+.+|.+|.+.++.... |+|+++
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~ 112 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQ 112 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHH
Confidence 4467799999999999999999999999999999999 8999999999999999999999987776655 999999
Q ss_pred HHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHH
Q 044089 232 AAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYIS 311 (521)
Q Consensus 232 ~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s 311 (521)
++||++++.++.+++++..+++|++|++..++++..+++....+.. ..+ ...+.++++++++|++++||++.+++.+
T Consensus 113 ~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S 189 (437)
T KOG1303|consen 113 AAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLS 189 (437)
T ss_pred HHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHHHH
Confidence 9999999999999999999999999999999999999998765422 344 5678889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhheecccccccCCC-CcccCCCch---hHHHHHHhhhcccccchhhhhhhccCCCChhhHHHHHHH
Q 044089 312 VGGVITTGVVVLCLLWIGLVDAVGFHPY-GTALDLSNL---PVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFV 387 (521)
Q Consensus 312 ~~~~~~~i~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~---~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~~ 387 (521)
.++.++++....++++.+..++.+.+.+ .....+... ++++|++.|+|.||.++|+|+..||+|++++|++.+++.
T Consensus 190 ~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~ 269 (437)
T KOG1303|consen 190 LVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYI 269 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHH
Confidence 9999999999999999988887665332 333333333 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHccCCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCcc----ccchh
Q 044089 388 FCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKEL----QSYSV 463 (521)
Q Consensus 388 i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~----~~~~~ 463 (521)
+++++|+.++++||++|||++.++++.|++........+.++..+|++.++.....|+.+..|+....+.. +....
T Consensus 270 ~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~ 349 (437)
T KOG1303|consen 270 IVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVL 349 (437)
T ss_pred HHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccce
Confidence 99999999999999999999999999999533444566778888999999999999999999998875532 35669
Q ss_pred hhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCC
Q 044089 464 SVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKI 517 (521)
Q Consensus 464 ~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~ 517 (521)
|.+.|+.+++.++++|+.+|+|+.+++++|++...++++++|+++|++++|++.
T Consensus 350 R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~ 403 (437)
T KOG1303|consen 350 RLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKR 403 (437)
T ss_pred eeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999877654
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-48 Score=391.67 Aligned_cols=354 Identities=23% Similarity=0.354 Sum_probs=313.2
Q ss_pred CCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhh-----CCCCCChHHHHHH
Q 044089 159 PARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDS-----APGLTTYPDVGQA 232 (521)
Q Consensus 159 ~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~-----~~~~~sY~~i~~~ 232 (521)
.++..|..++..|+++.++|+|+|++|+||+++||+ |.+..++.+.++.||.+.|++|... .....+|.+.++.
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~ 122 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAES 122 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence 355789999999999999999999999999999999 9999999999999999999998752 2233567766655
Q ss_pred H----------hChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhccc
Q 044089 233 A----------FGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLR 302 (521)
Q Consensus 233 ~----------fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~ 302 (521)
+ +|+++|+++++.+++.++|.|++|++++++++++++..... .. .+...++++....+++++++|
T Consensus 123 a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~----~~-~s~~~~i~~~~~~~lll~~Ir 197 (449)
T KOG1304|consen 123 AMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSP----GV-LSVRLYILIQLPPLLLLNLIR 197 (449)
T ss_pred HHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCC----CC-ccHHHHHHHHHHHHHHHHHHH
Confidence 5 58899999999999999999999999999999999973221 11 125677778888899999999
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhheecccccccCCCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChh---
Q 044089 303 DLTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFP--- 379 (521)
Q Consensus 303 ~l~~l~~~s~~~~~~~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~--- 379 (521)
|++.++.+|.++.+++++.++.+++....+.++.+..+...++.+++.++|+.+|||.|+.++.++.++||+|++++
T Consensus 198 ~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~ 277 (449)
T KOG1304|consen 198 NLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPF 277 (449)
T ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCcc
Confidence 99999999999999988877777766666666666667777899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHccCCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCC--c
Q 044089 380 FVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSK--E 457 (521)
Q Consensus 380 ~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~--~ 457 (521)
+++..++.+++++|+.+|+.||++||+++++.+++|+|+ ........+...+.++.+||++++|..+.+|+.+.++ +
T Consensus 278 gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~ 356 (449)
T KOG1304|consen 278 GVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE 356 (449)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc
Confidence 999999999999999999999999999999999999999 5555666777778899999999999999999977665 3
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCC
Q 044089 458 LQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKIS 518 (521)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~~ 518 (521)
.+.++..+.+|..+++.+..+|.++|+++.+++++|++++..+++++|++++++..+++..
T Consensus 357 ~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~ 417 (449)
T KOG1304|consen 357 NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGK 417 (449)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc
Confidence 3467889999999999999999999999999999999999999999999999999998874
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.1e-47 Score=406.75 Aligned_cols=352 Identities=20% Similarity=0.273 Sum_probs=293.5
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhH
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITG 238 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~ 238 (521)
-+..|..++++|++|+++|+|+|++|++|+++||+ |+++++++++++.||.++|.++.+ ..+..+|+|+++++|||++
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~-~~~~~sY~~la~~~~G~~g 135 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAAD-KTNIRTYEGVARVLLGPWG 135 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHhCHHH
Confidence 44678899999999999999999999999999999 999999999999999999999875 4667899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCC-CCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHH
Q 044089 239 RLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMN-FGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVIT 317 (521)
Q Consensus 239 ~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~ 317 (521)
++++++.+.+.++|+|++|+++++|.++.+++....+ +.......+.++.++.+++++|++++|+++.++++|.+++++
T Consensus 136 ~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~ 215 (467)
T PTZ00206 136 SYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSF 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988754221 111111123344455677899999999999999999999988
Q ss_pred HHHHHHhhhheeccccccc--C------C---CCcccC-CCchhHHHHHHhhhcccccchhhhhhhccCC--CChhhHHH
Q 044089 318 TGVVVLCLLWIGLVDAVGF--H------P---YGTALD-LSNLPVTIGLYGFAYAGHSVFPNIYSSMQEP--KKFPFVLM 383 (521)
Q Consensus 318 ~i~~~~~v~~~~~~~~~~~--~------~---~~~~~~-~~~~~~a~~~~~faf~g~~~~~~i~~emk~p--~k~~~~~~ 383 (521)
+++.++.+++....++... + . +...++ ..+++.++++++|||.||.+++++++||||| +|+.+++.
T Consensus 216 i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~ 295 (467)
T PTZ00206 216 MVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAST 295 (467)
T ss_pred HHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHH
Confidence 7766666554433222110 0 0 001122 2357889999999999999999999999985 67999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHccCCccchhccCC-CchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCC-ccccc
Q 044089 384 ISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNF-PKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSK-ELQSY 461 (521)
Q Consensus 384 ~a~~i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~-p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~-~~~~~ 461 (521)
.++.+++++|.++|++||++||+++++++++|+ |.++....++.+..++.++++||+.++|+|+.+++.+..+ +..+.
T Consensus 296 ~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~ 375 (467)
T PTZ00206 296 IAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAF 375 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCch
Confidence 999999999999999999999999999999999 6666667788888888899999999999999999987443 22344
Q ss_pred hhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044089 462 SVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKI 512 (521)
Q Consensus 462 ~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~ 512 (521)
+++...+..+++.++++|+.+|+++.+++++|++++..++|++|+++|++.
T Consensus 376 ~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~ 426 (467)
T PTZ00206 376 WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYS 426 (467)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 556566777777889999999999999999999999999999999999984
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.6e-46 Score=393.92 Aligned_cols=355 Identities=31% Similarity=0.554 Sum_probs=310.1
Q ss_pred CCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhh---CCCCCChHHHHHHHhCh
Q 044089 161 RKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDS---APGLTTYPDVGQAAFGI 236 (521)
Q Consensus 161 ~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~---~~~~~sY~~i~~~~fG~ 236 (521)
+|.|+++++++++|+++|+|+|++|++|+++||+ |++++++++++++||.++|.++... +++..+|.|++++++|+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 4789999999999999999999999999999999 9999999999999999999999875 35889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
++++++++++.+.+++.+++|+++.+|.+..+++....+ ...++..+.++.+++++|++++|+++.+++++.++++
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998865422 2223556667788899999999999999999999998
Q ss_pred HHHHHHHhhhheeccc----ccccCCC--CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChh---hHHHHHHH
Q 044089 317 TTGVVVLCLLWIGLVD----AVGFHPY--GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFP---FVLMISFV 387 (521)
Q Consensus 317 ~~i~~~~~v~~~~~~~----~~~~~~~--~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~---~~~~~a~~ 387 (521)
++++.++.+.+..... ..+.... ....++.+++.++++.+|||.||.++|++.+|||+|+|++ +++..++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 8776322222111111 1111111 2345567899999999999999999999999999998876 99999999
Q ss_pred HHHHHHHHHHHHHHhHccCCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCC----------Cc
Q 044089 388 FCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPS----------KE 457 (521)
Q Consensus 388 i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~----------~~ 457 (521)
+++++|+++|+.||++||+++.++++.|+|+++....++++...++++.+||+..+|.++.+++.+.+ +.
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 99999999999999999999999999999998877788999999999999999999999999998864 23
Q ss_pred cccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 044089 458 LQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISK 519 (521)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~~r 519 (521)
...++++...|+++++.++++|..+|+++.+++++|++++..++|++|+++|+|.++++..+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~ 378 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNS 378 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccc
Confidence 45667899999999999999999999999999999999999999999999999999988643
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.3e-41 Score=359.07 Aligned_cols=345 Identities=16% Similarity=0.240 Sum_probs=284.7
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhh----CCC-C-------CCh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDS----APG-L-------TTY 226 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~----~~~-~-------~sY 226 (521)
.++.+..++.+++++..+|.|||++|+||+++||+ |++++++.++++.||+++|.++..+ ++. . .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 55789999999999999999999999999999999 9999999999999999999986432 221 1 267
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcch
Q 044089 227 PDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTL 306 (521)
Q Consensus 227 ~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~ 306 (521)
.|+++..+||+++.+..+...+.+++.|+.|++..++++..+-.. .+ ...+.++..++++|++++|+++.
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~---------~~-~~~~~~i~~~v~~~~~~i~sl~~ 192 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDN---------LD-KRTWTYIFGACCATTVFIPSFHN 192 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCC---------cC-CCeEEeehHHHHHHHHHccCHHH
Confidence 899999999999999999999999999999999988887766321 11 23444566677788889999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhheecccc--cccCCCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChhhHHHH
Q 044089 307 LSYISVGGVITTGVVVLCLLWIGLVDA--VGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMI 384 (521)
Q Consensus 307 l~~~s~~~~~~~i~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~ 384 (521)
+++++.+|+.++++..+.++......+ .+++.. .+.++..++.++++++|||.||.++|+++++||||+|+++++..
T Consensus 193 l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l 271 (473)
T PLN03074 193 YRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLA 271 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHH
Confidence 999999998876654333322222111 112111 12345566777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHccCCccc--hhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCccccch
Q 044089 385 SFVFCSLLNAGVGICGYLMFGDSIQS--QFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYS 462 (521)
Q Consensus 385 a~~i~~~~Y~~vg~~gy~~fG~~~~~--~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~~~ 462 (521)
+..+++++|+.++++||++||+++.+ +.+.|+|.... ..++.++.+++++.+|++++.|+....|+.++.+..+...
T Consensus 272 ~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~ 350 (473)
T PLN03074 272 ATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSIC 350 (473)
T ss_pred HHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHH
Confidence 99999999999999999999998764 45667886643 5788888999999999999999999999987765445667
Q ss_pred hhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q 044089 463 VSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGK 516 (521)
Q Consensus 463 ~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~ 516 (521)
.|..+|+.++++++++|..+|+|+.+++++|+++++.+++++|+++|++.++++
T Consensus 351 ~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~ 404 (473)
T PLN03074 351 LRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSA 404 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 889999999999999999999999999999999999999999999999977654
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1e-39 Score=312.37 Aligned_cols=355 Identities=24% Similarity=0.415 Sum_probs=305.4
Q ss_pred CCCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC-------CCChHHH
Q 044089 157 LPPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPG-------LTTYPDV 229 (521)
Q Consensus 157 ~~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~-------~~sY~~i 229 (521)
.+.+.+++.+|+..|+.|+|-|.=|+++|+|+.++||.++..++..+.+|+||+.+|.+|..+.+. ..+|.++
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 445678999999999999999999999999999999999999999999999999999999864332 4799999
Q ss_pred HHHHhChh-HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhH
Q 044089 230 GQAAFGIT-GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLS 308 (521)
Q Consensus 230 ~~~~fG~~-~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~ 308 (521)
+...+++. |+..+.+.+.++++.+|+.|+++.++.+..-+|+...+ ..-|.+++.+.++|..++|+++-++
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~VS 262 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIVS 262 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHHH
Confidence 99988875 55888999999999999999999999999998866533 3346677888899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhheec--ccccccCCCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChhhHHHHHH
Q 044089 309 YISVGGVITTGVVVLCLLWIGL--VDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISF 386 (521)
Q Consensus 309 ~~s~~~~~~~i~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~ 386 (521)
.+|.++.++-+++=+.++.+.. ...++|+.-....+..+++..+|+++|+|..|..+|++.+.||||++|...+-++-
T Consensus 263 ~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsH 342 (524)
T KOG4303|consen 263 RLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSH 342 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHH
Confidence 9999998887765444443333 33444444445567789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHccCCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCC----------
Q 044089 387 VFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSK---------- 456 (521)
Q Consensus 387 ~i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~---------- 456 (521)
+..+++-..+|..||++|++.|+..++.|+|...+- .+..+..++..+.+||+.++.+.+.+|+.+...
T Consensus 343 IAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk-~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscy 421 (524)
T KOG4303|consen 343 IAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQSFK-ILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCY 421 (524)
T ss_pred HHHHHHHHHHHHheeeeechhhHHHHhcCCCccchh-hhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceee
Confidence 999999999999999999999999999999986553 344566677889999999999999999876432
Q ss_pred --ccccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 044089 457 --ELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISKL 520 (521)
Q Consensus 457 --~~~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~~r~ 520 (521)
...-+-+...+|.++++.++++|+.+|.|..+|+++|++.+..++|+.|+++|++++.+.+...
T Consensus 422 s~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~ 487 (524)
T KOG4303|consen 422 SPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNF 487 (524)
T ss_pred CCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhH
Confidence 2233456778999999999999999999999999999999999999999999999998877543
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-38 Score=324.91 Aligned_cols=354 Identities=23% Similarity=0.405 Sum_probs=298.2
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhH
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITG 238 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~ 238 (521)
+++.|...+++|++|+++|+||+++|++|++.|.+ |+++++++|+++.++.+++.+|..+.+. .+|.+++++.+|+.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-RTYSSLGDLIFGKLG 81 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-CCHHHHHHHHcCCCc
Confidence 45679999999999999999999999999999998 9999999999999999999999865544 599999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCC-CCCc-cccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 239 RLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMN-FGGL-HLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 239 ~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~-~~~~-~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
+....+.......| +++|+++++|.+..+....... +.+. +.++...+.+..+.++.|+++.|++..+++.|.+++.
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~ 160 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLA 160 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77776666655555 6999999999998665543321 1111 2344444678888999999999999999999999999
Q ss_pred HHHHHHHhhhheeccccc---ccC-CCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCC--ChhhHHHHHHHHHH
Q 044089 317 TTGVVVLCLLWIGLVDAV---GFH-PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK--KFPFVLMISFVFCS 390 (521)
Q Consensus 317 ~~i~~~~~v~~~~~~~~~---~~~-~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~--k~~~~~~~a~~i~~ 390 (521)
++++.++.+++....... ... ..+....++++..++++.+|||.||.++.++++|||||+ |+.++...+...++
T Consensus 161 ~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~ 240 (411)
T KOG1305|consen 161 SVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILAT 240 (411)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHH
Confidence 988877777766655332 111 112222236899999999999999999999999999995 59999999999999
Q ss_pred HHHHHHHHHHHhHccCCccchhccCCCchhHH------HhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCc----ccc
Q 044089 391 LLNAGVGICGYLMFGDSIQSQFTLNFPKEFVA------SKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKE----LQS 460 (521)
Q Consensus 391 ~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~------~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~----~~~ 460 (521)
++|..+|..||++||+.+.+|++.++|..... ....+....++.+..+|+..+|+|..+++.+.++. ..+
T Consensus 241 ~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s 320 (411)
T KOG1305|consen 241 LIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFS 320 (411)
T ss_pred HHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCcc
Confidence 99999999999999999999999999876443 34667777788889999999999999988776553 256
Q ss_pred chhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 044089 461 YSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQG 515 (521)
Q Consensus 461 ~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~ 515 (521)
..++.+++..++..+.+.|+.+|+++.+..++|++.+..++|++|+++|++..|+
T Consensus 321 ~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 321 GKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK 375 (411)
T ss_pred ceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence 6788999999999999999999999999999999999999999999999999885
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=2.2e-29 Score=262.37 Aligned_cols=358 Identities=18% Similarity=0.193 Sum_probs=274.4
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCC-ChHHHHHHHhC
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLT-TYPDVGQAAFG 235 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~-sY~~i~~~~fG 235 (521)
..+++.+..+++++++|++||+|+|++|++++..|+. +++++++.+.+++++++++.|+..+.+..+ +|.+++++.+|
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G 83 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLG 83 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhC
Confidence 3456678999999999999999999999999999999 999999999999999999999998888874 99999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGV 315 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~ 315 (521)
|++++++.+.+.+.+|+.+++|.+..++.+..++++...- ....+....++.+.++.++++.++...++..+.+..
T Consensus 84 ~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~----~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 84 KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL----NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhccc----CCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999864311 102355666666777777999999999999999888
Q ss_pred HHHHHHHHhhhheecccccc--cCCCCc-ccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC--hhhHHHHHHHHHH
Q 044089 316 ITTGVVVLCLLWIGLVDAVG--FHPYGT-ALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK--FPFVLMISFVFCS 390 (521)
Q Consensus 316 ~~~i~~~~~v~~~~~~~~~~--~~~~~~-~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k--~~~~~~~a~~i~~ 390 (521)
..++..++.+.+.....+.. ...+.. ...+..+..++++++|||.+|+++|++.+|||++.+ .+|++.++..+..
T Consensus 160 ~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~ 239 (415)
T COG0814 160 GKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIAL 239 (415)
T ss_pred HHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 77766555444433221111 111111 366788999999999999999999999999998754 9999999999999
Q ss_pred HHHHHHHHHHHhHccCCccchhccCCCchhHHHh-------------HHHHHHHHhhhhhccchhchHHHHHHhhcCCC-
Q 044089 391 LLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASK-------------VAIWTTVLIPMSKYAMTLTPIALSLEELMPSK- 456 (521)
Q Consensus 391 ~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~-------------i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~- 456 (521)
++|+.+++.+|..+|+.+.+++..+.++...... .......+.+.++|--......+.+++.+...
T Consensus 240 vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~ 319 (415)
T COG0814 240 VLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSN 319 (415)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhcc
Confidence 9999999999999999999999999987643221 11222222222332222333334444444321
Q ss_pred -----ccccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 044089 457 -----ELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISK 519 (521)
Q Consensus 457 -----~~~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~~r 519 (521)
+..............++....++...+..+.++..+|+.....+.++.|..++.|....+..+
T Consensus 320 ~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~ 387 (415)
T COG0814 320 SKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYG 387 (415)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecC
Confidence 112233445555666666777777778888888888888888888999988887765555443
No 9
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=259.90 Aligned_cols=348 Identities=16% Similarity=0.227 Sum_probs=254.8
Q ss_pred CCCCCCCCCchHHHHHHHHHhhhhhhhhHhHHHH-HhhcHHHHHHHH-----HHHHHHHHHHHHHHHhHhhCCCCCChHH
Q 044089 155 DSLPPARKCSLAQSCLNGINVLCGVGLLATPYAI-KEGGWSSLSLLF-----IFGIIAFYTGILLQECLDSAPGLTTYPD 228 (521)
Q Consensus 155 ~~~~~~~~~s~~~~v~~li~~iiG~GILslP~a~-~~~G~~g~illl-----~~~~l~~~t~~lL~~~~~~~~~~~sY~~ 228 (521)
++.+.+|+++.+.++..+++++||+|||..|.++ +++|.+|+.+.+ +.+++.++|+..|+.++++++|++.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi- 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI- 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH-
Confidence 3557789999999999999999999999999996 578887655544 566777899999999999999999999
Q ss_pred HHHHHhChhHHHHHHHHHHHHHHHHH-HHHHHHHHhH-HhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcch
Q 044089 229 VGQAAFGITGRLIVAIVLYLELFAAS-IEYLIMMSDN-LASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTL 306 (521)
Q Consensus 229 i~~~~fG~~~~~l~~~~~~~~~~g~~-v~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~ 306 (521)
.++||+...++..|.-.+...... +.+.+.++++ ++++++.+..+ +....++.+.+++.+.++ |+..
T Consensus 85 --~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p--------~~~~~lla~~~l~~lt~~-n~~~ 153 (479)
T KOG1287|consen 85 --SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVP--------RVASKLLAAALLVLLTLI-NSFS 153 (479)
T ss_pred --HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCc--------hHHHHHHHHHHHHHHHHH-hhhh
Confidence 789999999998888555544433 5566666665 89999854332 334444555555556555 8888
Q ss_pred hHHHHHHHHHHHH---HHHHhhhheecc-------cccccC-CCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCC
Q 044089 307 LSYISVGGVITTG---VVVLCLLWIGLV-------DAVGFH-PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEP 375 (521)
Q Consensus 307 l~~~s~~~~~~~i---~~~~~v~~~~~~-------~~~~~~-~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p 375 (521)
+++.+.+..++++ +.++.++..|.. ++...+ .++...+.+++..|+....|||.||++++.+.+|+|||
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP 233 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNP 233 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCc
Confidence 8888877766654 333333333332 221112 45566777889999999999999999999999999999
Q ss_pred CC-hhhHHHHHHHHHHHHHHHHHHHHHh---------------HccCCccchhccCCCchhHHHhHHHHHHHHhhhhhcc
Q 044089 376 KK-FPFVLMISFVFCSLLNAGVGICGYL---------------MFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYA 439 (521)
Q Consensus 376 ~k-~~~~~~~a~~i~~~~Y~~vg~~gy~---------------~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~p 439 (521)
+| +|+++.+++.+++++|++++++++. .|++.+.+...+-+|-....+.++.+...+ +.
T Consensus 234 ~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~i-----fs 308 (479)
T KOG1287|consen 234 RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVI-----FS 308 (479)
T ss_pred cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHH-----HH
Confidence 65 9999999999999999999999884 455555555544444444444444333332 34
Q ss_pred chhchHHHHHHhhcCCC-ccccchhhhHH-HHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCC
Q 044089 440 MTLTPIALSLEELMPSK-ELQSYSVSVII-RTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKI 517 (521)
Q Consensus 440 l~~~p~~~~le~~l~~~-~~~~~~~~~~~-~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~ 517 (521)
-.+.-...+.|+++|.. .+.+.+..... ..++.+...++..+..|+..++++++...+....+.+-+++|+|.+||++
T Consensus 309 ~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~ 388 (479)
T KOG1287|consen 309 SSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL 388 (479)
T ss_pred HHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 44555667888999976 33344433333 34444445555555678999999999999999999999999999999998
Q ss_pred CC
Q 044089 518 SK 519 (521)
Q Consensus 518 ~r 519 (521)
+|
T Consensus 389 ~r 390 (479)
T KOG1287|consen 389 PR 390 (479)
T ss_pred CC
Confidence 76
No 10
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=2.6e-24 Score=223.71 Aligned_cols=340 Identities=15% Similarity=0.113 Sum_probs=251.4
Q ss_pred HHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHHHH
Q 044089 168 SCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVL 246 (521)
Q Consensus 168 ~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~~~ 246 (521)
+++.++++++|+|||++|.+++..|.. +++++++.++++.++..++.++..+.|+..+|.++++++|||++++++.+.+
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 355788999999999999999888887 8888999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHhhh
Q 044089 247 YLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLL 326 (521)
Q Consensus 247 ~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~~~~v~ 326 (521)
.+.++..+++|++..++++..+++..... ... .....++..+++.++.+ +..+...+++.+.++..+...+.++
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~----~~~-~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGF----PWS-ARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCC----Ccc-HHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888643211 111 23333444444444443 4778888888777666655443333
Q ss_pred heeccc-cc-ccCCC-CcccCCCchhHHHHHHhhhcccccchhhhhhhcc-CCCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 044089 327 WIGLVD-AV-GFHPY-GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQ-EPKKFPFVLMISFVFCSLLNAGVGICGYL 402 (521)
Q Consensus 327 ~~~~~~-~~-~~~~~-~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk-~p~k~~~~~~~a~~i~~~~Y~~vg~~gy~ 402 (521)
..+..+ +. ...+. .....+.++..+++...++|.+|.+++.+.++++ |+||.+|++.++..+++++|+++.+....
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g 235 (381)
T TIGR00837 156 SGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMG 235 (381)
T ss_pred HHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 332221 11 11111 1123566788899999999988889999999997 55679999999999999999999888777
Q ss_pred HccCCccchhccCCC-------------chhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCccccchhhhHHHH
Q 044089 403 MFGDSIQSQFTLNFP-------------KEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRT 469 (521)
Q Consensus 403 ~fG~~~~~~i~~n~p-------------~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~~~~~~~~~~ 469 (521)
.++.+...+.....+ .......+..+...+.+.+++.......++.+.+.+.+... +..+.....
T Consensus 236 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~~~~~~~ 313 (381)
T TIGR00837 236 NLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--KKGRFKTGL 313 (381)
T ss_pred CCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCCchhhh
Confidence 665443322111111 11122344555566677788888888888888887776432 222456667
Q ss_pred HHHHHHHHHHhhcccHH-HHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q 044089 470 ILAISTLVVALTLPYFG-IVMSLIGSLLAMLITLIFPCVFYLKILQGK 516 (521)
Q Consensus 470 ~~~~~~~~va~~vp~~~-~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~ 516 (521)
+..+++.++|...|+.. ..+++.| ++..++.+++|+++++|.||++
T Consensus 314 ~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~ 360 (381)
T TIGR00837 314 LTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF 360 (381)
T ss_pred hhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence 77788899999999644 8999999 7788899999999999987753
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.93 E-value=2e-23 Score=216.22 Aligned_cols=348 Identities=18% Similarity=0.212 Sum_probs=257.0
Q ss_pred CCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHH
Q 044089 161 RKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGR 239 (521)
Q Consensus 161 ~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~ 239 (521)
|+.+.+++++.++++.||+|+|++|.+...+|.. +++++++++.+.++++.++.|...+.++..+|.+++++.+||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 3568899999999999999999999999999998 999999999999999999999988888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHH
Q 044089 240 LIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTG 319 (521)
Q Consensus 240 ~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i 319 (521)
++..+.+.+..|..+++|+.-.++.++++++.... ...+.+ ...++..+++..+.+. ..+.+.+++.+-+...+
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~----~~~~~~-~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i 154 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG----TDLSPW-LSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMI 154 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----CCCcHH-HHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876431 111112 2222222222222222 33344444443333322
Q ss_pred HHHHhhhheecccccccC----CCCcccCCCchhHHHHHHhhhcccccchhhhhhhcc-CCCChhhHHHHHHHHHHHHHH
Q 044089 320 VVVLCLLWIGLVDAVGFH----PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQ-EPKKFPFVLMISFVFCSLLNA 394 (521)
Q Consensus 320 ~~~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk-~p~k~~~~~~~a~~i~~~~Y~ 394 (521)
...+.+... ...+.+.+ ......+|..++.++++.++||..|+++|.+.+.++ |++|.+|++.++..+..++|+
T Consensus 155 ~~~~~l~~~-~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl 233 (394)
T PF03222_consen 155 ISFIILVVY-LIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYL 233 (394)
T ss_pred HHHHHHHHH-HhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 222111111 12222211 223346788899999999999999999999999998 568899999999999999999
Q ss_pred HHHHHHHhHc-----------cCCccc--hhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCccccc
Q 044089 395 GVGICGYLMF-----------GDSIQS--QFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSY 461 (521)
Q Consensus 395 ~vg~~gy~~f-----------G~~~~~--~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~~ 461 (521)
+..+.....- +.+..+ ....+...+.....+..+...+.+.+||--....+++.+.+.+..++ ..
T Consensus 234 ~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~--~~ 311 (394)
T PF03222_consen 234 LWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN--NS 311 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cc
Confidence 8755544321 111111 12233333445556667777788889998888899999999887632 33
Q ss_pred hhhhHHHHHHHHHHHHHHhhccc-HHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCC
Q 044089 462 SVSVIIRTILAISTLVVALTLPY-FGIVMSLIGSLLAMLITLIFPCVFYLKILQGKIS 518 (521)
Q Consensus 462 ~~~~~~~~~~~~~~~~va~~vp~-~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~~ 518 (521)
..|.....+..++++++|...|+ |...+++.| ....++..++|+++.+|.|+++..
T Consensus 312 ~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~ 368 (394)
T PF03222_consen 312 SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPK 368 (394)
T ss_pred cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCC
Confidence 44555667778889999999994 889999999 888999999999999998877653
No 12
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.91 E-value=4.9e-22 Score=204.06 Aligned_cols=345 Identities=14% Similarity=0.136 Sum_probs=251.5
Q ss_pred CCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHH
Q 044089 161 RKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGR 239 (521)
Q Consensus 161 ~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~ 239 (521)
||.+.+.+++.+.++.||+|+|++|.+.+.+|.+ +++++++++.+..||+.++.|...+.++..++..++++.+||.|+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~ 86 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWN 86 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHH
Confidence 3347788999999999999999999999999999 999999999999999999999988888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHH
Q 044089 240 LIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTG 319 (521)
Q Consensus 240 ~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i 319 (521)
.+..+...+.+|+.+++|+.-.++.++..++... +...+ +....++.++++....+. ..+.+.+.+.+-+...+
T Consensus 87 ~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~~i~-~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~i 160 (415)
T PRK09664 87 IISGITVAFVLYILTYAYISANGAIISETISMNL----GYHAN-PRIVGICTAIFVASVLWI-SSLAASRITSLFLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cCCCc-HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999986411 11222 223334444455555554 44666666544443333
Q ss_pred HHHHhhhheecccccccCC---CCcc----cCCCchhHHHHHHhhhcccccchhhhhhhccC-CCChhhHHHHHHHHHHH
Q 044089 320 VVVLCLLWIGLVDAVGFHP---YGTA----LDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQE-PKKFPFVLMISFVFCSL 391 (521)
Q Consensus 320 ~~~~~v~~~~~~~~~~~~~---~~~~----~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~-p~k~~~~~~~a~~i~~~ 391 (521)
+..+..+. ....+.+.+. .... ..+..++.++++.++||..|+++|.+...+++ ++|.+|++.++..+..+
T Consensus 161 i~f~~~~~-~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLv 239 (415)
T PRK09664 161 ISFVIVFG-SFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALV 239 (415)
T ss_pred HHHHHHHH-HHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 22222111 1122221110 0100 11234778999999999999999999999985 47899999999999999
Q ss_pred HHHHHHHHHHh-----------HccCCccchhc--cCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCcc
Q 044089 392 LNAGVGICGYL-----------MFGDSIQSQFT--LNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKEL 458 (521)
Q Consensus 392 ~Y~~vg~~gy~-----------~fG~~~~~~i~--~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~ 458 (521)
+|++.-.+-.. ..|++...-+. ..-........+..+...+.+.+||--....+.+.+.+.+..++.
T Consensus 240 iY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~ 319 (415)
T PRK09664 240 IYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS 319 (415)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99876544332 12222211111 111222344445666666778888888888889999888866532
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhccc-HHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 044089 459 QSYSVSVIIRTILAISTLVVALTLPY-FGIVMSLIGSLLAMLITLIFPCVFYLKILQG 515 (521)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~va~~vp~-~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~ 515 (521)
...|.....+.++++++++++.|+ |-..+++.|.. ..++..++|+++-+|.||+
T Consensus 320 --~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 320 --HGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK 374 (415)
T ss_pred --cccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence 334556667788999999999996 88899999986 6688999999999999976
No 13
>PRK10483 tryptophan permease; Provisional
Probab=99.91 E-value=7.2e-22 Score=203.01 Aligned_cols=346 Identities=13% Similarity=0.098 Sum_probs=256.7
Q ss_pred CCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChh
Q 044089 159 PARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGIT 237 (521)
Q Consensus 159 ~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~ 237 (521)
.+++.+.+.+++.+.++.||+|+|++|.+.+..|.+ +++++++++.+..||+.++.|...+.++..++..++++.+||.
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~~ 86 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKG 86 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChH
Confidence 356689999999999999999999999999999999 9999999999999999999998777778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHH
Q 044089 238 GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVIT 317 (521)
Q Consensus 238 ~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~ 317 (521)
|+.+..+.+.+.+|+.+++|+.-.++.+...++... ...+ +..-.++.++++....+. ..+.+.+++.+-+..
T Consensus 87 g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~-----~~i~-~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~ 159 (414)
T PRK10483 87 WNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS-----LNVP-ARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGA 159 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC-----CCCc-HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999986521 1111 233344444444444444 445566665444433
Q ss_pred HHHHHHhhhheeccccccc----CC-CCcccCCCchhHHHHHHhhhcccccchhhhhhhccC-CCChhhHHHHHHHHHHH
Q 044089 318 TGVVVLCLLWIGLVDAVGF----HP-YGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQE-PKKFPFVLMISFVFCSL 391 (521)
Q Consensus 318 ~i~~~~~v~~~~~~~~~~~----~~-~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~-p~k~~~~~~~a~~i~~~ 391 (521)
.++..+.++.. ...+.+. +. ......+..++.++++.++||..|+++|++.+.+++ ++|.+|++.++..+..+
T Consensus 160 ~i~~f~~~~~~-l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv 238 (414)
T PRK10483 160 KVITFFLTFGS-LLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALA 238 (414)
T ss_pred HHHHHHHHHHH-HHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 33222222111 1112211 11 111122456889999999999999999999999985 57899999999999999
Q ss_pred HHHHHHHHHHhHccCCcc----------chh---ccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCcc
Q 044089 392 LNAGVGICGYLMFGDSIQ----------SQF---TLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKEL 458 (521)
Q Consensus 392 ~Y~~vg~~gy~~fG~~~~----------~~i---~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~ 458 (521)
+|++.-+.....-+.+.. +.. ..+..++.....+..+...+.+.+||--....+.+.+.+.+..++.
T Consensus 239 ~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~ 318 (414)
T PRK10483 239 LYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS 318 (414)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999976665554332211 111 1111222334445566666778888888888999999998876542
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhccc-HHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 044089 459 QSYSVSVIIRTILAISTLVVALTLPY-FGIVMSLIGSLLAMLITLIFPCVFYLKILQG 515 (521)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~va~~vp~-~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~ 515 (521)
...|.....+.++++++++++.|+ |-..+++.|.. ..++..++|+++.++.||+
T Consensus 319 --~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 319 --AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred --cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 334555666788999999999996 88899999976 6778899999999999976
No 14
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.90 E-value=2.6e-21 Score=199.76 Aligned_cols=343 Identities=15% Similarity=0.138 Sum_probs=245.6
Q ss_pred chHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHH
Q 044089 164 SLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIV 242 (521)
Q Consensus 164 s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~ 242 (521)
+.+.+++.+.++.||+|+|++|.+...+|.. +++++++++.+..|+++++.|+..+.++..++.+++++.+||+|+++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 6788999999999999999999999999998 899999999989999999999876667678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHHH
Q 044089 243 AIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVV 322 (521)
Q Consensus 243 ~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~~ 322 (521)
.+.+.+..|..+++|+.-.++.+...+..+. +.+.+.. ...++..++.....+. ..+.+.+++-+-+...++..
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~----~~~i~~~-~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~ 157 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWT----GISMSPT-AGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFL 157 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhc----cCCCChH-HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877765421 1122222 2222222222222333 33445544433332222221
Q ss_pred HhhhheecccccccCCCC-cccCCCchhHHHHHHhhhcccccchhhhhhhccC-CCChhhHHHHHHHHHHHHHHHHHHHH
Q 044089 323 LCLLWIGLVDAVGFHPYG-TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQE-PKKFPFVLMISFVFCSLLNAGVGICG 400 (521)
Q Consensus 323 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~-p~k~~~~~~~a~~i~~~~Y~~vg~~g 400 (521)
+.+ ......+++.+.-. .+.+..-++.++++..+||..|+++|.+.+.+++ ++|.+|++.++..+..++|++.-...
T Consensus 158 ~~~-~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 158 VVM-LALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHH-HHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11112222111100 0111224889999999999999999999999985 57899999999999999999988877
Q ss_pred HhHccCCccc----------hhcc---CCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCccccchhhhHH
Q 044089 401 YLMFGDSIQS----------QFTL---NFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSVSVII 467 (521)
Q Consensus 401 y~~fG~~~~~----------~i~~---n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~~~~~~~~ 467 (521)
...-+.+... +.+. +.........+..+...+.+.+||--....+.+.+.+.+..+.. ...|...
T Consensus 237 lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~--~~~r~~~ 314 (403)
T PRK15132 237 LGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT--VGGRLQT 314 (403)
T ss_pred HhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--ccCCchh
Confidence 7655433211 1111 11122334445566666778888888888899999988865432 2336667
Q ss_pred HHHHHHHHHHHHhhccc-HHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q 044089 468 RTILAISTLVVALTLPY-FGIVMSLIGSLLAMLITLIFPCVFYLKILQGK 516 (521)
Q Consensus 468 ~~~~~~~~~~va~~vp~-~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~ 516 (521)
..+.++++++++...|+ |...+++.|.. ..++.+++|+++.+|.+|++
T Consensus 315 ~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 315 GLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQN 363 (403)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcC
Confidence 78889999999999995 77888888864 78899999999999998765
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.85 E-value=6.6e-19 Score=182.33 Aligned_cols=342 Identities=13% Similarity=0.115 Sum_probs=241.9
Q ss_pred hHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCC-CCChHHHHHHHhChhHHHHH
Q 044089 165 LAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPG-LTTYPDVGQAAFGITGRLIV 242 (521)
Q Consensus 165 ~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~-~~sY~~i~~~~fG~~~~~l~ 242 (521)
.+.-++.+.++++|+|+|++|...++.||. .++..++...+.+++..++.|....++. ..++.+++++.|||+++.+.
T Consensus 5 d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 5 DTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHH
Confidence 355678999999999999999999999999 6666667777778888888887544443 78999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHHH
Q 044089 243 AIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVV 322 (521)
Q Consensus 243 ~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~~ 322 (521)
++++++..+..+.+|....++.+..++...... ....+....++..+++... .....+.+.+++.+-+...++..
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~----~~p~~~i~~lilv~il~~i-v~~G~~~i~r~~~il~~~~ii~l 159 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGT----APPLRGLLSLALILILVAI-MSFGEKLLFKIMGPLVFPLVLIL 159 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHHHHHH-HHhcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877643211 1111212222222222222 23366777777765554443333
Q ss_pred HhhhheecccccccC---CCC-cccCCCchhHHHHHHhhhcccccchhhhh----hhccC----CCChhhHHHHHHHHHH
Q 044089 323 LCLLWIGLVDAVGFH---PYG-TALDLSNLPVTIGLYGFAYAGHSVFPNIY----SSMQE----PKKFPFVLMISFVFCS 390 (521)
Q Consensus 323 ~~v~~~~~~~~~~~~---~~~-~~~~~~~~~~a~~~~~faf~g~~~~~~i~----~emk~----p~k~~~~~~~a~~i~~ 390 (521)
+.+.... ..+.+.+ ..+ ....+.++..+++..+|||.+|+.++++. ++.+| ++|.+|++..+..+.+
T Consensus 160 ~~l~~~l-ip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 160 VLLSLYL-IPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHH-HHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 2222221 1111111 111 11235678999999999999999999998 44552 3578999999999999
Q ss_pred HHHHHHHHHHHhHccCCccchhc-cC---------CCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcC----C-
Q 044089 391 LLNAGVGICGYLMFGDSIQSQFT-LN---------FPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMP----S- 455 (521)
Q Consensus 391 ~~Y~~vg~~gy~~fG~~~~~~i~-~n---------~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~----~- 455 (521)
++|+..-+.+....+.+...... .| -........+..+...+.+.+||--....+++.+++.+. .
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~ 318 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK 318 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 99999988888877644322111 11 112234445566666777889999999999999998772 1
Q ss_pred -CccccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044089 456 -KELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKI 512 (521)
Q Consensus 456 -~~~~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~ 512 (521)
++.+++........++++.+++++..-|++-.++.-+|+-....+.|++|....+|.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v 376 (397)
T TIGR00814 319 GKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV 376 (397)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence 123344556677778888899999999999999997777778889999999988873
No 16
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.84 E-value=2.8e-18 Score=176.52 Aligned_cols=341 Identities=13% Similarity=0.152 Sum_probs=241.9
Q ss_pred HHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhC-CCCCChHHHHHHHhChhHHHHHH
Q 044089 166 AQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSA-PGLTTYPDVGQAAFGITGRLIVA 243 (521)
Q Consensus 166 ~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~-~~~~sY~~i~~~~fG~~~~~l~~ 243 (521)
+.-++.+.++.||+|+|++|-.....|.. .++++++.+.+++++++.|.|...+. +...+|.+++++.|||.|+.+..
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHH
Confidence 34458999999999999999999999988 99999999999999999999976655 66789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHH
Q 044089 244 IVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVL 323 (521)
Q Consensus 244 ~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~~~ 323 (521)
+++++..|..+.+|...+.+.+.+++.+.. +.. .. .+.+..++.++++....+. .-+.+-+++-+-+...++..+
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~~~--~~-~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~ 176 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQL-GFA--PL-NRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLV 176 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcC--Cc-cHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888654431 110 11 1334444444444444443 334444444333222222111
Q ss_pred hhhheecccccccC---CCC-----cccC---CCchhHHHHHHhhhcccccchhhhhhh----cc-----C--CCChhhH
Q 044089 324 CLLWIGLVDAVGFH---PYG-----TALD---LSNLPVTIGLYGFAYAGHSVFPNIYSS----MQ-----E--PKKFPFV 381 (521)
Q Consensus 324 ~v~~~~~~~~~~~~---~~~-----~~~~---~~~~~~a~~~~~faf~g~~~~~~i~~e----mk-----~--p~k~~~~ 381 (521)
.+. .+...+++.+ ..+ ...+ ...++.+++..++||..|+.+|++... .+ | ++|.+++
T Consensus 177 ~l~-~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~ri 255 (443)
T PRK13629 177 LIS-LSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQI 255 (443)
T ss_pred HHH-HHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHH
Confidence 111 1112211110 001 0001 124788999999999999999999888 53 3 4678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHccCCccc-----hh------ccCCCc---h-----hHHHhHHHHHHHHhhhhhccchh
Q 044089 382 LMISFVFCSLLNAGVGICGYLMFGDSIQS-----QF------TLNFPK---E-----FVASKVAIWTTVLIPMSKYAMTL 442 (521)
Q Consensus 382 ~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~-----~i------~~n~p~---~-----~~~~~i~~~~~~i~~~~s~pl~~ 442 (521)
+.++..+..++|++.-+.+...-+.+... |. ...++. . .....++.+...+.+.+||--..
T Consensus 256 i~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~ 335 (443)
T PRK13629 256 ISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHY 335 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888766533211 11 111222 1 33445566666678889998899
Q ss_pred chHHHHHHhhcCC----C---ccccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044089 443 TPIALSLEELMPS----K---ELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKI 512 (521)
Q Consensus 443 ~p~~~~le~~l~~----~---~~~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~ 512 (521)
..+++.+++++.+ . +...+..+.....++++.+++++..-|++-.++.-+|+-....+.|++|....+|.
T Consensus 336 LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kv 412 (443)
T PRK13629 336 LGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKA 412 (443)
T ss_pred HHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHcc
Confidence 9999999988732 1 23445556777788889999999999999999998888888889999999988873
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.79 E-value=6.4e-17 Score=171.43 Aligned_cols=233 Identities=14% Similarity=0.120 Sum_probs=145.8
Q ss_pred CCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHH---hHhhCCCCCChHHHHHHHhC
Q 044089 159 PARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQE---CLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 159 ~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~---~~~~~~~~~sY~~i~~~~fG 235 (521)
.+|+++.++.+...++++||+|++.+|..++++|..+++.+++.+++.......+.| ..++.+|.+.|. ++++|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~---~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYA---EYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHH---HHHcC
Confidence 367899999999999999999999999988888876666666666555544444444 444555555555 89999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcc--cCcchhHHHHHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWL--RDLTLLSYISVG 313 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l--~~l~~l~~~s~~ 313 (521)
|+.+++..|...+........+.....+++..+++... + .....++...+++....+ +..+...+++.+
T Consensus 81 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~--------~-~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i 151 (438)
T PRK10655 81 KSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATL--------S-PVQICLATIGVLWLCTVANFGGARITGQISSV 151 (438)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--------c-hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999999987766554444444555566666664211 1 111122222222222222 233444444444
Q ss_pred HHHHHHHHHHhhhheec--ccccccCCCCccc---CCCchhHHHHHHhhhcccccchhhhhhhccCCC-ChhhHHHHHHH
Q 044089 314 GVITTGVVVLCLLWIGL--VDAVGFHPYGTAL---DLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK-KFPFVLMISFV 387 (521)
Q Consensus 314 ~~~~~i~~~~~v~~~~~--~~~~~~~~~~~~~---~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~-k~~~~~~~a~~ 387 (521)
.++..++.++.+...+. .....+.....+. .+.++..++....|+|.|++....+.+|+|||+ +.||++..+..
T Consensus 152 ~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~ 231 (438)
T PRK10655 152 TVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTL 231 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHH
Confidence 33333322222221111 1111111110111 124566678888999999999999999999996 59999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q 044089 388 FCSLLNAGVGICGYLM 403 (521)
Q Consensus 388 i~~~~Y~~vg~~gy~~ 403 (521)
+++++|+++.......
T Consensus 232 ~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 232 GAAVIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999987665443
No 18
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.79 E-value=2e-16 Score=179.36 Aligned_cols=242 Identities=13% Similarity=0.145 Sum_probs=158.2
Q ss_pred CCCCCCchHHHHHHH-HHhhhhhhhhHhHH-HHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhh----CCCCCChHHHH
Q 044089 158 PPARKCSLAQSCLNG-INVLCGVGLLATPY-AIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDS----APGLTTYPDVG 230 (521)
Q Consensus 158 ~~~~~~s~~~~v~~l-i~~iiG~GILslP~-a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~----~~~~~sY~~i~ 230 (521)
...++.+++.+++.- +.+|+|+|+|..|. .+.++|.. +++++++.++++..++..+.+...+ .+|.|.|.
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yi--- 149 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLI--- 149 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHH---
Confidence 446789999999998 99999999998665 56799977 7788888888777777777665543 34444444
Q ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHH
Q 044089 231 QAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYI 310 (521)
Q Consensus 231 ~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~ 310 (521)
.++||+..++.+.|++++.....+..|.+.+++++..+++...............++++++++++..+++. ..+...++
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~-Gvk~~ak~ 228 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFA-GMEWENKA 228 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 89999999999999988888788888999999999888753211000001111223333333333323222 44444444
Q ss_pred HHHHHHHHHHHHHhhhheeccccc-----c---c-----CCC---CcccCCCchhHHHHHHhhhcccccchhhhhhhccC
Q 044089 311 SVGGVITTGVVVLCLLWIGLVDAV-----G---F-----HPY---GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQE 374 (521)
Q Consensus 311 s~~~~~~~i~~~~~v~~~~~~~~~-----~---~-----~~~---~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~ 374 (521)
+.+.+++.++.++.++..++.... + + ... .......++...++++.+||.|+....++.+|+||
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKn 308 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKD 308 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 443333333333333332221110 0 0 000 00111223777888888899999999999999999
Q ss_pred CCC-hhhHHHHHHHHHHHHHHHHHHHHHhH
Q 044089 375 PKK-FPFVLMISFVFCSLLNAGVGICGYLM 403 (521)
Q Consensus 375 p~k-~~~~~~~a~~i~~~~Y~~vg~~gy~~ 403 (521)
|+| +|++++.++++++++|+++.++....
T Consensus 309 P~r~IPratl~ai~i~~vlYllv~~~~~~~ 338 (953)
T TIGR00930 309 PQKAIPKGTLLAILTTTVVYLGSVVLFGAC 338 (953)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 975 99999999999999999998754433
No 19
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.79 E-value=1.3e-16 Score=168.82 Aligned_cols=238 Identities=15% Similarity=0.108 Sum_probs=145.9
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGIT 237 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~ 237 (521)
+.+|+++.++.+..+++++||+||+.+|...++.|...+..+++.++........+.|...+.|........+++ +|++
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 347789999999999999999999999999888886544444544444444444444443334333333334477 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcc--cCcchhHHHHHHHH
Q 044089 238 GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWL--RDLTLLSYISVGGV 315 (521)
Q Consensus 238 ~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l--~~l~~l~~~s~~~~ 315 (521)
..++..|..++........+.+....++..+++.... .....++...+++.+..+ +..+..+.++.+.+
T Consensus 81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~---------~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLND---------PIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGL 151 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC---------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999876544333444555555677777654311 111111122222222222 23334444443333
Q ss_pred HHHHHHHHhhhheecc--ccccc--CC-CCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCC-ChhhHHHHHHHHH
Q 044089 316 ITTGVVVLCLLWIGLV--DAVGF--HP-YGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK-KFPFVLMISFVFC 389 (521)
Q Consensus 316 ~~~i~~~~~v~~~~~~--~~~~~--~~-~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~-k~~~~~~~a~~i~ 389 (521)
+..++.++.+...+.. +...+ +. .....++.++..++....|+|.|.+.+....+|+|||+ ++||++..+..++
T Consensus 152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv 231 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLA 231 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHH
Confidence 3333222221111111 11001 11 11123355788889999999999999999999999995 5999999999999
Q ss_pred HHHHHHHHHHHHhHcc
Q 044089 390 SLLNAGVGICGYLMFG 405 (521)
Q Consensus 390 ~~~Y~~vg~~gy~~fG 405 (521)
+++|+++.+......+
T Consensus 232 ~ilYil~~~~~~~~~p 247 (435)
T PRK10435 232 GIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999887665443
No 20
>PRK15049 L-asparagine permease; Provisional
Probab=99.78 E-value=2.1e-16 Score=169.73 Aligned_cols=347 Identities=16% Similarity=0.167 Sum_probs=191.2
Q ss_pred CCCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhC
Q 044089 157 LPPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 157 ~~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG 235 (521)
.+.+|+.+.++..+..++.+||+|+|..|.. ++.+|..+++.+++.+++....+..+.|...+.|........+++++|
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G 103 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLG 103 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhC
Confidence 3478889999999999999999999999975 678887677777788888888888888877777766677777799999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGV 315 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~ 315 (521)
++..+++.|..++.....+.......+.++..+ +... + . ....+.++..+++..+. +...+....+..+..
T Consensus 104 ~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~----~--~-~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 104 EKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG----G--V-PQWVFALAALTIVGTMN-MIGVKWFAEMEFWFA 174 (499)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC----C--C-cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999987765444443343444444322 1110 0 0 11122222222222221 123333333333322
Q ss_pred HHHHHHHHhhhheec---ccccc-------cCC-----CCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hh
Q 044089 316 ITTGVVVLCLLWIGL---VDAVG-------FHP-----YGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FP 379 (521)
Q Consensus 316 ~~~i~~~~~v~~~~~---~~~~~-------~~~-----~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~ 379 (521)
+..++.++.++..+. ..+.. +.. ...+.++..+..++....|+|.|.+.+..+.+|+|||+| .|
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iP 254 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVP 254 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHH
Confidence 221111111111110 01000 000 001112223445566789999999999999999999976 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHccCCcc----chhcc---C--CCchhHHHhHHHHHHHHhhhh--hccchhchHHHH
Q 044089 380 FVLMISFVFCSLLNAGVGICGYLMFGDSIQ----SQFTL---N--FPKEFVASKVAIWTTVLIPMS--KYAMTLTPIALS 448 (521)
Q Consensus 380 ~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~----~~i~~---n--~p~~~~~~~i~~~~~~i~~~~--s~pl~~~p~~~~ 448 (521)
|++..++..+.++|++..+......+.+.. +++.. . .|.......+..+...+.... .+...+.....+
T Consensus 255 rAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~A 334 (499)
T PRK15049 255 KAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA 334 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988766655442211 11111 0 111001111111111111111 122233444455
Q ss_pred HHhhcCCC-ccccchhhhHHHHHHH-----HHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 044089 449 LEELMPSK-ELQSYSVSVIIRTILA-----ISTLVVALTLP--YFGIVMSLIGSLLAMLITLIFPCVFYLKILQG 515 (521)
Q Consensus 449 le~~l~~~-~~~~~~~~~~~~~~~~-----~~~~~va~~vp--~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~ 515 (521)
.++.+|+. .+.+ ..+.+.+.+++ +...++....+ .+..++++.+ ....+.|+++++++++.+|+
T Consensus 335 rdg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 335 MGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred hcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 67777754 1111 22233332222 11112222223 2555566644 35677899999999988754
No 21
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.78 E-value=1.9e-16 Score=171.74 Aligned_cols=352 Identities=12% Similarity=0.105 Sum_probs=207.0
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHHH--HhhcHH---HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYAI--KEGGWS---SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQA 232 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~--~~~G~~---g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~ 232 (521)
+.+|+.+.++.++..++.++|+||+.+|... ..+|.. +.++-.+.+++..+|+..+....++.++.+.|. ++
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~---~~ 101 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYS---YV 101 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeH---HH
Confidence 4678899999999999999999999999753 346744 334344566666677777777777777888888 78
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccc----cCCCCCCc---cc-cchhHHHHHHHHHHHhhhcccCc
Q 044089 233 AFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPH----TSMNFGGL---HL-DCHKIFSITATLVVLPTVWLRDL 304 (521)
Q Consensus 233 ~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~----~~~~~~~~---~~-~~~~~~~i~~~lii~pl~~l~~l 304 (521)
++|+...+++.|...+.....+.......+.++..++.. ...+..+. .. .......++..+++. ....+..
T Consensus 102 ~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~-~ln~~Gi 180 (557)
T TIGR00906 102 TVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLA-VLLSFGV 180 (557)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHH-HHHHhch
Confidence 899999999999988776665665666666666665532 11110000 00 011222222222222 2233467
Q ss_pred chhHHHHHHHHHHHHHHHHhhhheecccc--cccCC-------CCcccCCCchhHHHHHHhhhcccccchhhhhhhccCC
Q 044089 305 TLLSYISVGGVITTGVVVLCLLWIGLVDA--VGFHP-------YGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEP 375 (521)
Q Consensus 305 ~~l~~~s~~~~~~~i~~~~~v~~~~~~~~--~~~~~-------~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p 375 (521)
+..++++.+.++..+.+++.++..+.... .++.. +..+.++.++..++....|+|.|...+....+|+|||
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP 260 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNP 260 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCc
Confidence 77777776666555544444333333211 11110 1112345577888999999999999999999999999
Q ss_pred CC-hhhHHHHHHHHHHHHHHHHHHHHHhHccCCc---cchhc---cCCCchhH--HHhHHHHHHHHhh--hhhccchhch
Q 044089 376 KK-FPFVLMISFVFCSLLNAGVGICGYLMFGDSI---QSQFT---LNFPKEFV--ASKVAIWTTVLIP--MSKYAMTLTP 444 (521)
Q Consensus 376 ~k-~~~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~---~~~i~---~n~p~~~~--~~~i~~~~~~i~~--~~s~pl~~~p 444 (521)
+| +|+++..++.+++++|+++.+.-..+.+.+. .+.+. ........ ...++.+...... ...+...+..
T Consensus 261 ~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil 340 (557)
T TIGR00906 261 QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVI 340 (557)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 9999999999999999999877554433221 11111 11111111 1111111111111 1123444556
Q ss_pred HHHHHHhhcCCC-ccccchhhhHHHHHHHH--HHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q 044089 445 IALSLEELMPSK-ELQSYSVSVIIRTILAI--STLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGK 516 (521)
Q Consensus 445 ~~~~le~~l~~~-~~~~~~~~~~~~~~~~~--~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~ 516 (521)
...+.++.+|+. .+.+.+.+...+..++. .+.+++. +.++..+.++... +..+.|+++++..+++++++
T Consensus 341 ~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~-~~~~~~l~~l~si--g~ll~y~lv~~~~l~lR~~~ 412 (557)
T TIGR00906 341 YAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAF-LFDLKALVDLLSI--GTLLAYSLVAACVLILRYQP 412 (557)
T ss_pred HHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHH-HcCHHHHHHHHHH--HHHHHHHHHHHHHHHhhccc
Confidence 667778888864 11122223333332222 2223333 3356777776543 34578888877777766543
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.78 E-value=1.7e-16 Score=168.40 Aligned_cols=236 Identities=13% Similarity=0.151 Sum_probs=149.4
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH---HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS---SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAF 234 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~---g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~f 234 (521)
+.+|+++.++++...++.+||+|++.+|..+...|.. +.++..+.++..+++..+|....++.+|.+.| +++++
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~---~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAY---ARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHH---HHHHc
Confidence 4577899999999999999999999999887665533 34443455666666677777666666676777 58999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcc--cCcchhHHHHH
Q 044089 235 GITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWL--RDLTLLSYISV 312 (521)
Q Consensus 235 G~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l--~~l~~l~~~s~ 312 (521)
||+..++..|..++...............++..+++.... +....++...+++.+..+ ...+...+++.
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~ 152 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD---------PLVLTITCVVVLWIFVLLNIVGPKMITRVQA 152 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---------cHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 9999999998877655444444444455555555543210 111112222222222222 23445555544
Q ss_pred HHHHHHHHHHHhhhheec--ccccccCC--C-CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCC-ChhhHHHHHH
Q 044089 313 GGVITTGVVVLCLLWIGL--VDAVGFHP--Y-GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK-KFPFVLMISF 386 (521)
Q Consensus 313 ~~~~~~i~~~~~v~~~~~--~~~~~~~~--~-~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~-k~~~~~~~a~ 386 (521)
+..+..++.++.+...+. ..+..+.. . .....+..+..++....|+|.|++....+.+|+|||+ +.||++..++
T Consensus 153 i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~ 232 (445)
T PRK10644 153 VATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGV 232 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHH
Confidence 444333332222222111 11111111 0 0111234556678889999999999999999999996 5999999999
Q ss_pred HHHHHHHHHHHHHHHhHcc
Q 044089 387 VFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 387 ~i~~~~Y~~vg~~gy~~fG 405 (521)
.+++++|+++.++.....+
T Consensus 233 ~i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 233 LIAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999999887554443
No 23
>PRK11021 putative transporter; Provisional
Probab=99.77 E-value=5.2e-16 Score=163.03 Aligned_cols=340 Identities=16% Similarity=0.154 Sum_probs=182.3
Q ss_pred CchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHH
Q 044089 163 CSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLI 241 (521)
Q Consensus 163 ~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l 241 (521)
.++++++...++++||+|++.+|.. .+.+|...+..+++.+++.......+.|...+.|........++++||++..++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 4789999999999999999999987 456775455555555555555555554444444443444445589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHH
Q 044089 242 VAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVV 321 (521)
Q Consensus 242 ~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~ 321 (521)
..|..++...............++..+++... . ......+...+++. ..-.+..+..++++.+..+..+.+
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~-~ln~~Gv~~~~~~~~~~~~~~~~i 151 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWSS-------W-QLLLAELLTLALLW-LLNLRGASSSANLQTVIALLIVAL 151 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC-------c-hHHHHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99987754333333333444555555554210 0 01111111111111 111224444444443332222222
Q ss_pred HHhhhheecccccccCCC-CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhhHHHHHHHHHHHHHHHHHHH
Q 044089 322 VLCLLWIGLVDAVGFHPY-GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFVLMISFVFCSLLNAGVGIC 399 (521)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~~~~a~~i~~~~Y~~vg~~ 399 (521)
++.++..+..+...+... ....++.++..++....|+|.|++......+|+|||+| +||++..+..+++++|+++.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 152 VVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111111111 12235667888999999999999999999999999965 9999999999999999998765
Q ss_pred HH--hHccCCccc--hh---c-cCCCchhHHHhHHHHHHHHhhhhh-----ccchhchHHHHHHhhcCCC-ccccchhhh
Q 044089 400 GY--LMFGDSIQS--QF---T-LNFPKEFVASKVAIWTTVLIPMSK-----YAMTLTPIALSLEELMPSK-ELQSYSVSV 465 (521)
Q Consensus 400 gy--~~fG~~~~~--~i---~-~n~p~~~~~~~i~~~~~~i~~~~s-----~pl~~~p~~~~le~~l~~~-~~~~~~~~~ 465 (521)
-. ..+++...+ .. . ..+... ...+..+...+..+.+ +...+.....+.++.+|+. .+.+ ++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~-~~~t 308 (410)
T PRK11021 232 VLHFPAYGDKQAAAASLPGIFVQLFGGY--ALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS-ARGV 308 (410)
T ss_pred HHhcCCCcchhhccccHHHHHHHHhCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc-cCCC
Confidence 32 222332111 10 0 011111 0011111111122222 2223455556667888854 1111 1222
Q ss_pred HHHHHHH-----HHHHHHHh-hcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q 044089 466 IIRTILA-----ISTLVVAL-TLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGK 516 (521)
Q Consensus 466 ~~~~~~~-----~~~~~va~-~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~ 516 (521)
+.+..++ ....++.. ...++..++++... ...+.|++.++..+|++|++
T Consensus 309 P~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 309 PVNALNAVLGCCAVSILLIYALGLNLEALIAYANG--IFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--HHHHHHHHHHHHHHHHhccc
Confidence 2222222 11111211 22477777777553 45678888888888776654
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=99.77 E-value=3.8e-16 Score=166.24 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=157.0
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
+.+|+.+.++..+..++.+||+|++..|.. .+.+|...++.+++.+++....+..+.|...+.|........+++.+|+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 457889999999999999999999999876 5677866666777778777777777777776666666777778999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
+..++..|..++.............+.++..+++... ...+.++...++..+. .++.+..+++..+..+
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~~ 166 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVP----------TWIWAAAFFIIINAVN-LVNVRLYGETEFWFAL 166 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc----------HHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHH
Confidence 9999999998777655556666666677766554221 1122222222222222 2244444443322221
Q ss_pred HHHH-------HHHhhhheecc-cccccC--CC---CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhhHH
Q 044089 317 TTGV-------VVLCLLWIGLV-DAVGFH--PY---GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFVL 382 (521)
Q Consensus 317 ~~i~-------~~~~v~~~~~~-~~~~~~--~~---~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~~ 382 (521)
..++ ..++++..+.. ...+++ .. ..+.++.++..++....|+|.|.+.+..+.+|+|||+| .||++
T Consensus 167 ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 167 IKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 1111 11111111110 001111 00 11234667788999999999999999999999999975 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcc
Q 044089 383 MISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 383 ~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
..++..++++|++..+......+
T Consensus 247 ~~~~~~~~~~y~~~~~~~~~~~~ 269 (458)
T PRK10249 247 NQVVYRILLFYIGSLVVLLALYP 269 (458)
T ss_pred HHHHHHHHHHHHHHHHHHheecc
Confidence 99999999999887666554443
No 25
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.76 E-value=7.7e-16 Score=163.80 Aligned_cols=238 Identities=14% Similarity=0.148 Sum_probs=158.1
Q ss_pred CCCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhC
Q 044089 157 LPPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 157 ~~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG 235 (521)
.+.+|+.+.++..+..++.+||+|+|.+|.. ++.+|..+++.+++.+++....+..+.|...+.|......+.+++.+|
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~g 87 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAIG 87 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhC
Confidence 4568899999999999999999999999954 778887677777777777777777777766666666677778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGV 315 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~ 315 (521)
++..++..|..++.....+.......+.++..+++... ...+.++..+++..+. ....+..+++..+..
T Consensus 88 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 88 RWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIP----------LWLFSLILTIVLTLTN-LYSVKSYGEFEFWFA 156 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHH-HHhcchhhHHHHHHH
Confidence 99999999998877666666677777777776664321 1122222222221122 224444444443333
Q ss_pred HHHHHHHH-----hh-hheecccc---cccC---C-CC-cccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhh
Q 044089 316 ITTGVVVL-----CL-LWIGLVDA---VGFH---P-YG-TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPF 380 (521)
Q Consensus 316 ~~~i~~~~-----~v-~~~~~~~~---~~~~---~-~~-~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~ 380 (521)
+..++.++ .+ ...+.... .++. . .+ .+.++.++..++....|+|.|.+.+..+.+|+|||+| .||
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPr 236 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITR 236 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHH
Confidence 22221111 11 11111100 0011 0 11 1123446888999999999999999999999999964 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcc
Q 044089 381 VLMISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 381 ~~~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
++..+...+.++|++..+......+
T Consensus 237 Ai~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 237 ATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 9999999999999987665544433
No 26
>PRK10746 putative transport protein YifK; Provisional
Probab=99.76 E-value=1.2e-15 Score=162.50 Aligned_cols=237 Identities=16% Similarity=0.146 Sum_probs=157.3
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
+.+|+.+.++..+..++.+||+|+|..|.. ++.+|...++..++.+++.......+.+.....|....+...+++++|+
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 457889999999999999999999998876 6788875556667777777877888888776777777788888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
++++++.|...+.....+...+...+.+++.+++... ...+.++...++..+.. +..+..+.+......
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~~~~~~~~~~~~~~lN~-~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------QWIPALIAVALVALANL-AAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------hHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 9999999998877666666666777777777665321 11222222222221211 122333222221111
Q ss_pred H-------HHHHHHhhhheecccc---cccC---CCC--cccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhh
Q 044089 317 T-------TGVVVLCLLWIGLVDA---VGFH---PYG--TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPF 380 (521)
Q Consensus 317 ~-------~i~~~~~v~~~~~~~~---~~~~---~~~--~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~ 380 (521)
. .+++.+.++..+...+ .+++ ..+ .+.++.++..++....|+|.|.+.+....+|+|||+| +||
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 1 1111111111111111 1111 111 1224567788999999999999999999999999965 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHcc
Q 044089 381 VLMISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 381 ~~~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
++..++..+.++|++..++......
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p 260 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFP 260 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeC
Confidence 9999999999999997665554443
No 27
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.76 E-value=1.1e-15 Score=163.25 Aligned_cols=235 Identities=17% Similarity=0.197 Sum_probs=152.0
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPY-AIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~-a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
+.+|+.+.++.+...++.+||+|++..|. +++++|...+..+++.+++.......+.|.....+....+.+.+++++|+
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g~ 96 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGP 96 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhCc
Confidence 46888999999999999999999999886 47788875555666777777666667777654444444667788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
...+++.|..++.............+.++..+++... ...+.++...++..+.. ...+..++++.+..+
T Consensus 97 ~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~----------~~~~~~~~~~~~~~iN~-~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 97 WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLS----------DWVASLAVVLLLLSLNL-ATVKMFGEMEFWFAM 165 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 9999999998876654445556666667766654321 11222222222222221 234444444433332
Q ss_pred HHHHHHHhhhheec------cccc-----ccCC----CC-cccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hh
Q 044089 317 TTGVVVLCLLWIGL------VDAV-----GFHP----YG-TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FP 379 (521)
Q Consensus 317 ~~i~~~~~v~~~~~------~~~~-----~~~~----~~-~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~ 379 (521)
..+..++.++..+. .... .+.+ .+ .+.++.++..++....|+|.|++.+....+|+|||+| +|
T Consensus 166 ~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iP 245 (469)
T PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLP 245 (469)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHH
Confidence 22221111111111 0000 0110 01 1223456889999999999999999999999999976 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhH
Q 044089 380 FVLMISFVFCSLLNAGVGICGYLM 403 (521)
Q Consensus 380 ~~~~~a~~i~~~~Y~~vg~~gy~~ 403 (521)
|++..+...+.++|++..+.....
T Consensus 246 rai~~~~~~~~~~y~l~~~~~~~~ 269 (469)
T PRK11049 246 RAINSIPIRIIMFYVFALIVIMSV 269 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeee
Confidence 999988888899999887776543
No 28
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.76 E-value=4.7e-16 Score=167.55 Aligned_cols=238 Identities=15% Similarity=0.209 Sum_probs=144.8
Q ss_pred CCCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHHH--HHHHHHHH---HHHHHHHHHHHhHhhCCCCCChHHHH
Q 044089 157 LPPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSSL--SLLFIFGI---IAFYTGILLQECLDSAPGLTTYPDVG 230 (521)
Q Consensus 157 ~~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g~--illl~~~~---l~~~t~~lL~~~~~~~~~~~sY~~i~ 230 (521)
.+.+|+.+.++.+...++.++|+|++.+|.. .+.+|..|. +.+++.++ ...++...|....++.+|.+.|.
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~--- 114 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI--- 114 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH---
Confidence 4568899999999999999999999999976 566775443 33344444 44445555555555555666665
Q ss_pred HHHhChhHHHHHHHHHHHH-HHHHHHHHHHHHHhHH-hhhccccCCCCCCccccchhHHHHHHHHHHHhhhc--ccCcch
Q 044089 231 QAAFGITGRLIVAIVLYLE-LFAASIEYLIMMSDNL-ASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVW--LRDLTL 306 (521)
Q Consensus 231 ~~~fG~~~~~l~~~~~~~~-~~g~~v~y~i~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~--l~~l~~ 306 (521)
++.+|++..++..|..++. ..+.+..+....++++ ..+++....+ .....++..++++.... .+..+.
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~--------~~~~~~i~~~~i~~~~~ln~~Gvk~ 186 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVP--------EWAIRLVAVLCVLLLTLVNCLSVKW 186 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------hHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 7899999999988875432 2233444555555554 3344432111 11111222222222222 224555
Q ss_pred hHHHHHHHHHHHHHHHHhhhheec---ccc-c-ccCC----CCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC
Q 044089 307 LSYISVGGVITTGVVVLCLLWIGL---VDA-V-GFHP----YGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK 377 (521)
Q Consensus 307 l~~~s~~~~~~~i~~~~~v~~~~~---~~~-~-~~~~----~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k 377 (521)
..+++.+..+..++.++.++..+. ..+ . ..+. .....++.++..++....|+|.|++.+..+.+|+|||+|
T Consensus 187 ~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r 266 (501)
T TIGR00911 187 ATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchh
Confidence 555555444443332222221111 111 0 0110 111123446777889999999999999999999999965
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHhHcc
Q 044089 378 -FPFVLMISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 378 -~~~~~~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
.||++..+..+++++|++++++.....+
T Consensus 267 ~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 267 TLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999877655444
No 29
>TIGR00909 2A0306 amino acid transporter.
Probab=99.76 E-value=4.3e-16 Score=164.65 Aligned_cols=240 Identities=16% Similarity=0.237 Sum_probs=154.2
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHH-HhhcHHHHHHHHHHHHHHHHHHHHHHHh---HhhCCCCCChHHHHHHHhC
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAI-KEGGWSSLSLLFIFGIIAFYTGILLQEC---LDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~-~~~G~~g~illl~~~~l~~~t~~lL~~~---~~~~~~~~sY~~i~~~~fG 235 (521)
+|+.|.++.++..++.++|+|++.+|... ..+|...++.+++.+++.......+.+. .++.+|.+.|. ++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~---~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYA---YEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeH---HHHhC
Confidence 57799999999999999999999999764 4555544444555555554444444444 44444555555 88999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccc----cchhH-HHHHHHHHHHhhhcccCcchhHHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHL----DCHKI-FSITATLVVLPTVWLRDLTLLSYI 310 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~----~~~~~-~~i~~~lii~pl~~l~~l~~l~~~ 310 (521)
|+.+++..|...+.....+..+....++++..+++....+...... ....+ ...+..++++-....+..+..+++
T Consensus 79 ~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~ 158 (429)
T TIGR00909 79 ELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKV 158 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9999999999888777777778888888887776532111000000 00000 111112222222223466667777
Q ss_pred HHHHHHHHHHHHHhhhheeccc--ccccCCCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCC-ChhhHHHHHHH
Q 044089 311 SVGGVITTGVVVLCLLWIGLVD--AVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK-KFPFVLMISFV 387 (521)
Q Consensus 311 s~~~~~~~i~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~-k~~~~~~~a~~ 387 (521)
+.+..+..+..++.++..+... ...+.+ ..+.++.++..++....|+|.|++....+.+|+|||+ +.||++..+..
T Consensus 159 ~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~ 237 (429)
T TIGR00909 159 NDILVVLKVAALLLFAALGAIHFASNNYTP-FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLI 237 (429)
T ss_pred HHHHHHHHHHHHHHhhhHHHhhCcHHhcCC-CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHH
Confidence 6666555444333322222211 111211 1123455778889999999999999999999999995 58999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q 044089 388 FCSLLNAGVGICGYLM 403 (521)
Q Consensus 388 i~~~~Y~~vg~~gy~~ 403 (521)
++.++|++..+.....
T Consensus 238 ~~~v~Yil~~~~~~~~ 253 (429)
T TIGR00909 238 VVTLLYVLVAAVILGA 253 (429)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999998766543
No 30
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.75 E-value=4.9e-16 Score=165.01 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=148.3
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHHH-HhhcHH-----HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYAI-KEGGWS-----SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQ 231 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~-~~~G~~-----g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~ 231 (521)
+.+|+.+.++.+...++.++|+|++.+|... ..+|.. +.++..++.+...++..++....++.+|.+.|. +
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~---~ 81 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYL---K 81 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeH---H
Confidence 4578899999999999999999999999874 455532 333444566667777778888778888888887 6
Q ss_pred HHhChhHHHHHHHHHHH-HHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhc--ccCcchhH
Q 044089 232 AAFGITGRLIVAIVLYL-ELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVW--LRDLTLLS 308 (521)
Q Consensus 232 ~~fG~~~~~l~~~~~~~-~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~--l~~l~~l~ 308 (521)
+++|+...++..|..+. ........+....++++..+++.. .....++..++++.+.. .+..+...
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----------~~~~~~~~~~~~~~~~~ln~~gv~~~~ 150 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID-----------PLLGKFIAAGLIIAFMLLHLRSVEGGA 150 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------hHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 88999999999997443 233334455666667665544310 11111111111111222 23444444
Q ss_pred HHHHHHHHHHHHHHHhhhheec--ccccccCCCC-----cccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhh
Q 044089 309 YISVGGVITTGVVVLCLLWIGL--VDAVGFHPYG-----TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPF 380 (521)
Q Consensus 309 ~~s~~~~~~~i~~~~~v~~~~~--~~~~~~~~~~-----~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~ 380 (521)
+++.+..+..++.++.++..+. ..+.+++... ...++.++..++....|+|.|++....+.+|+|||+| +||
T Consensus 151 ~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~ 230 (445)
T PRK11357 151 AFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPR 230 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchH
Confidence 5554444333322221211111 1111111111 1112445667888899999999999999999999975 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 044089 381 VLMISFVFCSLLNAGVGICGYLM 403 (521)
Q Consensus 381 ~~~~a~~i~~~~Y~~vg~~gy~~ 403 (521)
++..++.+++++|+++.+.....
T Consensus 231 Ai~~~~~i~~~~Y~l~~~~~~~~ 253 (445)
T PRK11357 231 ALIGSCLLVLVLYTLLALVISGL 253 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988765543
No 31
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.75 E-value=1.3e-15 Score=162.91 Aligned_cols=237 Identities=14% Similarity=0.137 Sum_probs=146.3
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhC
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG 235 (521)
+.+|+.+.++.++..++.+||+|++..|.. .+.+|.. .++.+++.+++.......+.|...+.|....+...+++++|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 457889999999999999999999999876 5678865 44556666666666666666665555555556667799999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGV 315 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~ 315 (521)
+...++..|..++.....+.......+..+..+++.. . ...+.++..+++..+. .+..+..+.++.+..
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~---------~-~~~~~~~~~~~~~~in-~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV---------P-VWPWCLLFCALIFGLN-VVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC---------c-HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 9999999999877655554444445555554444321 0 1122222222222121 223333333332222
Q ss_pred HHHHHHHHhhhh------eec--cc--cc--ccCC---CCc-ccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-h
Q 044089 316 ITTGVVVLCLLW------IGL--VD--AV--GFHP---YGT-ALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-F 378 (521)
Q Consensus 316 ~~~i~~~~~v~~------~~~--~~--~~--~~~~---~~~-~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~ 378 (521)
+..++.++.++. .+. .. +. .++. .+. +.+..++..++....|+|.|.+.+..+.+|+|||+| +
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 221111111111 110 00 00 0000 000 111234667788889999999999999999999975 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHcc
Q 044089 379 PFVLMISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 379 ~~~~~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
||++..++.+++++|+++.++.....+
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999998876555444
No 32
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.73 E-value=1.2e-14 Score=154.86 Aligned_cols=233 Identities=16% Similarity=0.192 Sum_probs=149.7
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
+.+|+.+.++.++..++.++|+|++.+|.. ++.+|...++.+++.+++.......+.+...+.|........+++.+||
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G~ 85 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGP 85 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCc
Confidence 457889999999999999999999999976 5677765566666666666666666666665566555555567999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
...+++.|...+.....+.......+.++..+++... ...+.+...+++..+ -.+..+....+..+..+
T Consensus 86 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~l-n~~gv~~~~~~~~~~~~ 154 (457)
T PRK10580 86 LAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVLSVVLIICAV-NLMSVKVFGELEFWFSF 154 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHHHH-HHccchhHHHHHHHHHH
Confidence 9999999998776655555555566666666654321 112222222222222 22244444444433222
Q ss_pred HHHHHHH-------hhhheeccc--c-cc----cCCC-CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhh
Q 044089 317 TTGVVVL-------CLLWIGLVD--A-VG----FHPY-GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPF 380 (521)
Q Consensus 317 ~~i~~~~-------~v~~~~~~~--~-~~----~~~~-~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~ 380 (521)
..+..++ .+...+... . .. ++.. ..+.++.++..++....|+|.|.+......+|+|||+| .||
T Consensus 155 ~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPr 234 (457)
T PRK10580 155 FKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPR 234 (457)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHH
Confidence 2211111 111111111 0 00 1110 11223446778888999999999999999999999976 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044089 381 VLMISFVFCSLLNAGVGICGY 401 (521)
Q Consensus 381 ~~~~a~~i~~~~Y~~vg~~gy 401 (521)
++..+..++.++|+...+...
T Consensus 235 Ai~~~~~~~~~~y~~~~~~~~ 255 (457)
T PRK10580 235 AINSVPMRILVFYVGTLFVIM 255 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999998888999988865543
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.73 E-value=2.6e-15 Score=159.78 Aligned_cols=231 Identities=12% Similarity=0.104 Sum_probs=153.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
+.+|+.+.++..+..++.+||+|+|..|.. .+++|...++..++.+++....+..+.|...+.|....+...+++.+||
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 468899999999999999999999999987 5677754555567777777777777777776677767777778999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
...++..|..++.....+.......+.++..+++... ...+.++...++..+.. ...+....++.+..+
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIP----------TWVSAAVFFVVINAINL-TNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 9999999998888777777777778888776654311 11222222222222221 133444444433322
Q ss_pred HHHHHHH-----hhhh-eeccccc--ccC----CCCc-ccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhhHH
Q 044089 317 TTGVVVL-----CLLW-IGLVDAV--GFH----PYGT-ALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFVL 382 (521)
Q Consensus 317 ~~i~~~~-----~v~~-~~~~~~~--~~~----~~~~-~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~~ 382 (521)
..+..++ .+++ .+..... .+. ..+. +.++.++..++....|+|.|.+......+|+|||+| +||++
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi 237 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHH
Confidence 2221111 1111 1110110 011 0111 122345667788899999999999999999999975 99999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044089 383 MISFVFCSLLNAGVGIC 399 (521)
Q Consensus 383 ~~a~~i~~~~Y~~vg~~ 399 (521)
..++..+.++|+.....
T Consensus 238 ~~~~~~i~~~y~~~~~~ 254 (456)
T PRK10238 238 NQVIYRILIFYIGSLAV 254 (456)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99888888888776444
No 34
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.73 E-value=1.5e-15 Score=162.33 Aligned_cols=236 Identities=12% Similarity=0.127 Sum_probs=148.8
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHHHh-hcHH----HHHHHHHHHHHHHHHHHHHHHhHhh-CCCCCChHHHHHHH
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKE-GGWS----SLSLLFIFGIIAFYTGILLQECLDS-APGLTTYPDVGQAA 233 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~~~-~G~~----g~illl~~~~l~~~t~~lL~~~~~~-~~~~~sY~~i~~~~ 233 (521)
+|++|.+++++..+++++|+|++.+|..+.+ +|.. +.++..++.++..+++..+....++ .+|.+.|. +++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~---~~~ 82 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYA---REG 82 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhH---HhH
Confidence 6789999999999999999999999998654 4432 3333334444555666666665555 56666666 899
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHh--hhcccCcchhHHHH
Q 044089 234 FGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLP--TVWLRDLTLLSYIS 311 (521)
Q Consensus 234 fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~p--l~~l~~l~~l~~~s 311 (521)
+||+..++..|..++........+......++..+++..... . .....++...+++. ..-.+..+...+++
T Consensus 83 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~------~-~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~ 155 (473)
T TIGR00905 83 FGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG------N-PVPSILGASVLLWVFTFLVLRGVRQAAFIN 155 (473)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC------C-cHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 999999999998876555555556666667777776632110 0 11111111121211 22233555555555
Q ss_pred HHHHHHHHHHHHhhhheec--cccccc--C--CCCc---ccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChhhHH
Q 044089 312 VGGVITTGVVVLCLLWIGL--VDAVGF--H--PYGT---ALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVL 382 (521)
Q Consensus 312 ~~~~~~~i~~~~~v~~~~~--~~~~~~--~--~~~~---~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~ 382 (521)
.+..+..++.++.++..+. .+...+ + .... ...+..+..++....|+|.|++....+.+|+||+|+.||++
T Consensus 156 ~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai 235 (473)
T TIGR00905 156 TITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKAT 235 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHH
Confidence 5544443322222221111 111111 1 1100 11234566778889999999999999999999955699999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHcc
Q 044089 383 MISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 383 ~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
..+..+++++|++..++.....+
T Consensus 236 ~~~~~i~~~~Yil~~~~~~~~~~ 258 (473)
T TIGR00905 236 VLGTLGALVIYILITLLSLGVLP 258 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcC
Confidence 99999999999998877554443
No 35
>PRK10836 lysine transporter; Provisional
Probab=99.73 E-value=9.5e-15 Score=156.87 Aligned_cols=238 Identities=16% Similarity=0.138 Sum_probs=144.7
Q ss_pred CCCCCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHh
Q 044089 157 LPPARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAF 234 (521)
Q Consensus 157 ~~~~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~f 234 (521)
.+.+|+.+.++.+...++.+||+|+|.+|.. .+++|.. .++.+++.+++....+..+.|...+.|........+++.+
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~ 90 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYV 90 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Confidence 3567889999999999999999999999975 6788876 5666777777777777777776666666566666668999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHH
Q 044089 235 GITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGG 314 (521)
Q Consensus 235 G~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~ 314 (521)
|+..++++.|..++................+..+++.. . ...+.++...++..+... ..+..+.+..+.
T Consensus 91 g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~lN~~-gv~~~~~~~~~~ 159 (489)
T PRK10836 91 EEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT---------P-GWIWSALFLGVIFLLNYI-SVRGFGEAEYWF 159 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---------c-hHHHHHHHHHHHHHHHHH-cchhhhhhHHHH
Confidence 99999999998776543333322333333344443321 0 111222222222222211 333333322211
Q ss_pred HHHHH------HHHHhhhheecccc---cc---cCCC--CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hh
Q 044089 315 VITTG------VVVLCLLWIGLVDA---VG---FHPY--GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FP 379 (521)
Q Consensus 315 ~~~~i------~~~~~v~~~~~~~~---~~---~~~~--~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~ 379 (521)
.+..+ +++..++..+...+ .+ +... +...++..+..+.....|+|.|++.+..+.+|+|||+| .|
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 239 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIP 239 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHH
Confidence 11111 11111111111111 01 1110 11112334444555667999999999999999999965 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHcc
Q 044089 380 FVLMISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 380 ~~~~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
|++..++.+++++|++..+......+
T Consensus 240 rAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 240 RAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999999999999999876655443
No 36
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.72 E-value=4.2e-15 Score=153.40 Aligned_cols=331 Identities=16% Similarity=0.257 Sum_probs=207.1
Q ss_pred CCchHHHHHHHHHhhhhhhhhHhHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHH
Q 044089 162 KCSLAQSCLNGINVLCGVGLLATPYAIKE-GGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRL 240 (521)
Q Consensus 162 ~~s~~~~v~~li~~iiG~GILslP~a~~~-~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~ 240 (521)
++|.+|.++.++++++|+|++.+|....+ +|.-+.+..++.+++......++.+...+.|+. +..++.++++||+.++
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g~ 80 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILGR 80 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHHH
Confidence 57899999999999999999999998654 332255555666666666666666666667764 7999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhc-cccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHH
Q 044089 241 IVAIVLYLELFAASIEYLIMMSDNLASLF-PHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTG 319 (521)
Q Consensus 241 l~~~~~~~~~~g~~v~y~i~~~~~l~~l~-~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i 319 (521)
++.+...++....+.......++.+...+ +.. +.+...+..++++-....+..+...+++.+.+...+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t-----------p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 81 LLSILFILYFFLIAAYLIRIFADFIKTYLLPRT-----------PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99998887777766666667777765543 211 112222222222223334577788877776665554
Q ss_pred HHH-HhhhheecccccccC--CCCcccCCCchhHHHH-HHhhhcccccchhhhhhhccCCCChhhHHHHHHHHHHHHHHH
Q 044089 320 VVV-LCLLWIGLVDAVGFH--PYGTALDLSNLPVTIG-LYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAG 395 (521)
Q Consensus 320 ~~~-~~v~~~~~~~~~~~~--~~~~~~~~~~~~~a~~-~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~~i~~~~Y~~ 395 (521)
+.. +.+..... ...+++ .+....++.++..+.. ...++|.|...+....+++|||+|.+|+...+..+++++|++
T Consensus 150 ~~~~~il~~~~~-~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~ 228 (359)
T TIGR00912 150 ILFILVLILLAP-KLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYIL 228 (359)
T ss_pred HHHHHHHHHHhc-ccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHH
Confidence 442 22222111 111111 1222334556555554 788999999999999999999999999999999999999999
Q ss_pred HHHHHHhHccCCccchhc---------cCCCc---hhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCccccchh
Q 044089 396 VGICGYLMFGDSIQSQFT---------LNFPK---EFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSYSV 463 (521)
Q Consensus 396 vg~~gy~~fG~~~~~~i~---------~n~p~---~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~~~~ 463 (521)
+.+.....+|.+...+.. .+++. ..-...+..| +...+++....++.....+.+.++.++.+.
T Consensus 229 ~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--- 303 (359)
T TIGR00912 229 TTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFW--VFIIFVKIAFYLYIAVKGLSKLFKKRKYSI--- 303 (359)
T ss_pred HHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCCcch---
Confidence 999999999865443221 12221 0001122333 334567777788888888888877654222
Q ss_pred hhHHHHHHHHHHHHHHhhccc-HHH---HHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 044089 464 SVIIRTILAISTLVVALTLPY-FGI---VMSLIGSLLAMLITLIFPCVFYLKILQG 515 (521)
Q Consensus 464 ~~~~~~~~~~~~~~va~~vp~-~~~---vi~l~G~~~~~~i~~ilP~l~~l~~~~~ 515 (521)
.....+. ..+.++. .|+ ... .....+ ..+....+++|.++.+...-|
T Consensus 304 -~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 304 -LILPVLM--VIFSISF-FPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred -hHHHHHH--HHHHHHH-ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1222222 2233333 443 322 222223 234556778898876665433
No 37
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.72 E-value=2.4e-15 Score=160.69 Aligned_cols=344 Identities=14% Similarity=0.193 Sum_probs=188.1
Q ss_pred CCCchHHHHHHHHHhhhhhhhhHhHHHH-HhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCC----CCCChHHHHHHHh
Q 044089 161 RKCSLAQSCLNGINVLCGVGLLATPYAI-KEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAP----GLTTYPDVGQAAF 234 (521)
Q Consensus 161 ~~~s~~~~v~~li~~iiG~GILslP~a~-~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~----~~~sY~~i~~~~f 234 (521)
|++++++.+...++++||+|++.+|... +.+|.. .++.+++.++........+.|...+.| |.+.| ++++|
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y---~~~~f 77 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSY---AKAGF 77 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhh---HHhHc
Confidence 5789999999999999999999999875 466644 344455555555555555555443333 45555 59999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHH
Q 044089 235 GITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGG 314 (521)
Q Consensus 235 G~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~ 314 (521)
|++..++..|..++........+.......+..+++.... + .........+..++.+-....+..+..++++.+.
T Consensus 78 G~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~---~--~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~ 152 (468)
T TIGR03810 78 GPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG---G--NNPPSIIGASVLLWCVHFLVLRGVEGAAFINTIT 152 (468)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC---C--CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999987765555556666666666666653211 0 0001111111111111111123555555555544
Q ss_pred HHHHHHHHHhhhheec--cccccc-----CCCC----cccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChhhHHH
Q 044089 315 VITTGVVVLCLLWIGL--VDAVGF-----HPYG----TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLM 383 (521)
Q Consensus 315 ~~~~i~~~~~v~~~~~--~~~~~~-----~~~~----~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~ 383 (521)
.+..++.++.++..+. ..+..+ .... ....+.++..++....|+|.|++....+.+|.||+|+.||++.
T Consensus 153 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~ 232 (468)
T TIGR03810 153 TIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATV 232 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHH
Confidence 4433322222211111 111011 1000 0111234557788899999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHccCCccch--------hccCCCchhHHHhHHHHHHHHhhhhh-----ccchhchHHHHHH
Q 044089 384 ISFVFCSLLNAGVGICGYLMFGDSIQSQ--------FTLNFPKEFVASKVAIWTTVLIPMSK-----YAMTLTPIALSLE 450 (521)
Q Consensus 384 ~a~~i~~~~Y~~vg~~gy~~fG~~~~~~--------i~~n~p~~~~~~~i~~~~~~i~~~~s-----~pl~~~p~~~~le 450 (521)
.++.+++++|+++.+..+...+.+...+ ...+.-. .....+.....++..+.+ +...+.....+.+
T Consensus 233 ~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g-~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ard 311 (468)
T TIGR03810 233 IGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVG-TWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKD 311 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999987765544221111 0001100 000111111111121211 2233445556667
Q ss_pred hhcCCC-ccccchhhhHHHHHHHHHHHH----HHhhc--ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q 044089 451 ELMPSK-ELQSYSVSVIIRTILAISTLV----VALTL--PYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGK 516 (521)
Q Consensus 451 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~----va~~v--p~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~ 516 (521)
+.+|+. .+.+ ++..+.+.+++..... +.... ..+..+.++.+. ...+.|+++++.++|+++++
T Consensus 312 g~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 312 KLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred CCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 788754 1111 1233333332221111 11112 245556665443 45678999999888887654
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.70 E-value=1.7e-14 Score=153.16 Aligned_cols=229 Identities=13% Similarity=0.127 Sum_probs=141.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHH-HHHHHHHH---HHHHHHHHHHHhHhhCCCCCChHHHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSL-SLLFIFGI---IAFYTGILLQECLDSAPGLTTYPDVGQAA 233 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~-illl~~~~---l~~~t~~lL~~~~~~~~~~~sY~~i~~~~ 233 (521)
+.+|+.|.++.+...++.++|......+.+++.+|+.+. +..++.++ ...+++..+....+..+| ....+++.
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg---~y~~~~~~ 80 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGG---GYGFARRA 80 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Confidence 457889999999999999998444555778888898743 33344443 344455555555444444 44455999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHH
Q 044089 234 FGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVG 313 (521)
Q Consensus 234 fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~ 313 (521)
+|++.+++..|..++........+....++++..+++... .....++...++..+. .+..+..++++.+
T Consensus 81 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~~~~~~~~~ln-~~g~~~~~~i~~~ 149 (442)
T TIGR00908 81 FGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAALVFYIVFIGIN-ILGVGEAAKLEFV 149 (442)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHHHHHHHHHHHH-HHHHHHHHhHHHH
Confidence 9999999999998877766777788888888888775421 1122222221111111 1233344443333
Q ss_pred HHHHHHHHHHhhhheec--ccccccCC---C----CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCC-ChhhHHH
Q 044089 314 GVITTGVVVLCLLWIGL--VDAVGFHP---Y----GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK-KFPFVLM 383 (521)
Q Consensus 314 ~~~~~i~~~~~v~~~~~--~~~~~~~~---~----~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~-k~~~~~~ 383 (521)
..+..++.++.++.... .+...+.. . ..+..+.++..++....|+|.|++....+.+|+|||+ +.||++.
T Consensus 150 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~ 229 (442)
T TIGR00908 150 VTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLI 229 (442)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHH
Confidence 22222221111111111 00000000 0 0111233567788888999999999999999999996 4999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044089 384 ISFVFCSLLNAGVGICG 400 (521)
Q Consensus 384 ~a~~i~~~~Y~~vg~~g 400 (521)
.+..++.++|+.+.+..
T Consensus 230 ~s~~~~~~~~~~~~~~~ 246 (442)
T TIGR00908 230 GAILTLLALAAGILVVG 246 (442)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998875543
No 39
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.69 E-value=9.2e-15 Score=148.47 Aligned_cols=343 Identities=19% Similarity=0.219 Sum_probs=228.5
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhh-HhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLL-ATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GIL-slP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
..+|+.+..+--++.++..||+|.| ....+++.+|.--++..+++|++.++-++.|++...+.|..+++.+++++.+|+
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~ 89 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGP 89 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcc
Confidence 4578889999999999999999965 577778999987888889999999999999999998889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhc--ccCcchhH----HH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVW--LRDLTLLS----YI 310 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~--l~~l~~l~----~~ 310 (521)
+.+++..|.+.+.....+++-++.++.+++.++|..+ .+.+.++.++++..+.+ .|...++- .+
T Consensus 90 ~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP----------~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 90 WAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP----------QWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998762 33444444433333321 22222222 12
Q ss_pred HHHHHHHHHHHHHhhhheeccccc---ccC-----CCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhhH
Q 044089 311 SVGGVITTGVVVLCLLWIGLVDAV---GFH-----PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFV 381 (521)
Q Consensus 311 s~~~~~~~i~~~~~v~~~~~~~~~---~~~-----~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~ 381 (521)
.+.++++.+++.+.++..+...+. +++ ..-.+.++.++..++...+|||.|.+.+-....|-|||+| .||+
T Consensus 160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 233333333444444443332221 111 1223456788999999999999999999999999999976 8898
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHhHccCCccchhc----cCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHH---
Q 044089 382 LMISFVFCSLLNAGVGIC-----GYLMFGDSIQSQFT----LNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSL--- 449 (521)
Q Consensus 382 ~~~a~~i~~~~Y~~vg~~-----gy~~fG~~~~~~i~----~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l--- 449 (521)
+..-..-..++|+..=+. -+-.++++..+-++ ..+|-..-..++.+++..+ .++--.++...+.+
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~---S~~NSglystsRmL~~l 316 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAAL---SALNSGLYSTSRMLYSL 316 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechh---hcccccccccchHHHHH
Confidence 887777777777654333 33334443332221 1223222222222222222 22222223322323
Q ss_pred --HhhcCCC-----ccccchhhhHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 044089 450 --EELMPSK-----ELQSYSVSVIIRTILAISTLVVALTLP--YFGIVMSLIGSLLAMLITLIFPCVFYLKILQG 515 (521)
Q Consensus 450 --e~~l~~~-----~~~~~~~~~~~~~~~~~~~~~va~~vp--~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~ 515 (521)
++.-|+. +..-........++...+..++....| -|..+.+..+.. ....+.+-.++|+|++|.
T Consensus 317 a~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 317 AKQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRKA 389 (462)
T ss_pred hhcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhc
Confidence 3333432 222234566677777788888888888 366666665544 455666777899998883
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.69 E-value=1.4e-14 Score=155.38 Aligned_cols=231 Identities=13% Similarity=0.044 Sum_probs=149.3
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHH-HHhhcHHH-HHHHHHHHHHHHHHHHHHHHhHhhCC-CCCChHHHHHHHhCh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYA-IKEGGWSS-LSLLFIFGIIAFYTGILLQECLDSAP-GLTTYPDVGQAAFGI 236 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a-~~~~G~~g-~illl~~~~l~~~t~~lL~~~~~~~~-~~~sY~~i~~~~fG~ 236 (521)
+|+++.++.....++.+||+|++..|.. .+.+|..+ +..+++.+++.......+.|...+.| ....|...+++++|+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 3678999999999999999999998865 67888664 55566777777766666777666666 334788888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
...++..|..++.....+.......+..+..+.+... ...+..+..+++..+ -.+..+..++++.+..+
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~i-n~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN----------PAVWIAIFYVFIVII-NLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHHH-HHhcchHHHHHHHHHHH
Confidence 9999999998877666666677777777765443211 111222111111112 22344555544433322
Q ss_pred HHHHHHHh-----h-hheecccccc------cCCC-Cccc-----CCCchhHHHHHHhhhcccccchhhhhhhccCCCC-
Q 044089 317 TTGVVVLC-----L-LWIGLVDAVG------FHPY-GTAL-----DLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK- 377 (521)
Q Consensus 317 ~~i~~~~~-----v-~~~~~~~~~~------~~~~-~~~~-----~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k- 377 (521)
..++.++. + +..+...+.. +... .... .+.++..++....|+|.|++....+.+|+|||+|
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 22211111 1 1111110000 0000 0111 1446777888899999999999999999999965
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 044089 378 FPFVLMISFVFCSLLNAGVGICGY 401 (521)
Q Consensus 378 ~~~~~~~a~~i~~~~Y~~vg~~gy 401 (521)
+||++..+..++.++|++..+...
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~~~ 253 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFLIG 253 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 999999999999999999865533
No 41
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.68 E-value=2.4e-14 Score=151.95 Aligned_cols=331 Identities=14% Similarity=0.115 Sum_probs=183.5
Q ss_pred HHHHhhhhhhhhHhHH-HHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHHHHHHH
Q 044089 171 NGINVLCGVGLLATPY-AIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLE 249 (521)
Q Consensus 171 ~li~~iiG~GILslP~-a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~~~~~~ 249 (521)
..++.+||+|+|..|. +.+++|...++..++.+++.......+.|...+.|........+++++|++..+++.|...+.
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~ 81 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWF 81 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence 3578899999999997 477888767777777787777777777776666666666777779999999999999998776
Q ss_pred HHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHhhhh--
Q 044089 250 LFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLLW-- 327 (521)
Q Consensus 250 ~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~~~~v~~-- 327 (521)
....+.......+..+..+.+.. ....+.++..+++..+. ....+..+.++.+..+..++.++.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 82 WVLVIPLEANIAAMILHSWVPGI----------PIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHhccccC----------cHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 55444444444454444443211 01122222222222222 224444444443333322222111111
Q ss_pred ----eecccc---ccc----CCC-CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhhHHHHHHHHHHHHHH
Q 044089 328 ----IGLVDA---VGF----HPY-GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFVLMISFVFCSLLNA 394 (521)
Q Consensus 328 ----~~~~~~---~~~----~~~-~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~~~~a~~i~~~~Y~ 394 (521)
.+.... .++ +.. ..+.++.++..++....|+|.|++.+....+|+|||+| +||++..++..+.++|+
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yi 230 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYL 230 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 111100 000 000 01234557889999999999999999999999999976 99999999999999999
Q ss_pred HHHHHHHhHccCCcc-----ch---hccCC--CchhHHHhHHHHHHHHhhhh--hccchhchHHHHHHhhcCCC-ccccc
Q 044089 395 GVGICGYLMFGDSIQ-----SQ---FTLNF--PKEFVASKVAIWTTVLIPMS--KYAMTLTPIALSLEELMPSK-ELQSY 461 (521)
Q Consensus 395 ~vg~~gy~~fG~~~~-----~~---i~~n~--p~~~~~~~i~~~~~~i~~~~--s~pl~~~p~~~~le~~l~~~-~~~~~ 461 (521)
+..++.......+.. +. ..... |.......+..+...+.... .+...+.....+.++.+|+. .+.+
T Consensus 231 l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~- 309 (446)
T PRK10197 231 CSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN- 309 (446)
T ss_pred HHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-
Confidence 987775444332211 11 01111 11111111111111111111 12233344445556777754 1111
Q ss_pred hhhhHHHHHHHHHH-----HHHHhhcc--cHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 044089 462 SVSVIIRTILAIST-----LVVALTLP--YFGIVMSLIGSLLAMLITLIFPCVFYLKILQG 515 (521)
Q Consensus 462 ~~~~~~~~~~~~~~-----~~va~~vp--~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~ 515 (521)
+...+.+..++... .+.....+ .+..++++.+... .+.|+++++.++|++|+
T Consensus 310 ~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~~ 368 (446)
T PRK10197 310 RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRKI 368 (446)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 22333333333221 11111122 3667777766554 37888888888887763
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.64 E-value=1.4e-13 Score=145.34 Aligned_cols=235 Identities=17% Similarity=0.166 Sum_probs=149.4
Q ss_pred CchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHHH----HHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhH
Q 044089 163 CSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFG----IIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITG 238 (521)
Q Consensus 163 ~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~~----~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~ 238 (521)
+|+++++...++.++|+|++..| .+.++|...++..++.+ +...+++..+.+. .|........+++++||+.
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~---~p~~GG~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSA---YPSAGGIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTSSTTHHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCcCeeeehhhhcccccc
Confidence 47899999999999999999999 77677765443333333 3444555555444 4444445556699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHH
Q 044089 239 RLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITT 318 (521)
Q Consensus 239 ~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~ 318 (521)
+++..+...+........+.....+++...+... ..+..+ ......++...+...+. .+..+..++++.+..+..
T Consensus 77 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~i~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~ 151 (426)
T PF13520_consen 77 GFIVGWLYWVAYILSLASVASSFASYLLSLFGPD---LNPSPW-PQFLIAIILILLFTLLN-LLGIKLSGKIQNILTVIK 151 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGG---GTCSHH-HHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred hhcccceeEEEeeccccccccchhhhhhhccccc---cccccc-hheeeeecccccceEee-echhhhhhhhhhhhhhhh
Confidence 9999999888877777778888888887765321 001000 01111122222222222 235555565555544444
Q ss_pred H-HHHHhhhheeccc--ccccC------CCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChhhHHHHHHHHH
Q 044089 319 G-VVVLCLLWIGLVD--AVGFH------PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFC 389 (521)
Q Consensus 319 i-~~~~~v~~~~~~~--~~~~~------~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~~i~ 389 (521)
+ ..++.++..+... ....+ ....+..+..+..++....|+|.|++..+.+.+|+|| |+.||++..+..++
T Consensus 152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~ 230 (426)
T PF13520_consen 152 IVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIV 230 (426)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHH
T ss_pred hhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHH
Confidence 4 2222222222111 11111 1222335566889999999999999999999999998 78999999999999
Q ss_pred HHHHHHHHHHHHhHccCC
Q 044089 390 SLLNAGVGICGYLMFGDS 407 (521)
Q Consensus 390 ~~~Y~~vg~~gy~~fG~~ 407 (521)
.++|++..+......+++
T Consensus 231 ~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 231 AIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHHHHTTSTHC
T ss_pred HHHHhhhhheeeecccch
Confidence 999999988877766543
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.55 E-value=3.7e-12 Score=135.89 Aligned_cols=242 Identities=17% Similarity=0.184 Sum_probs=155.0
Q ss_pred CCCCCCCchHH-HHHHHHHhhhhhhhhHhHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHH
Q 044089 157 LPPARKCSLAQ-SCLNGINVLCGVGLLATPYAIKEGG--WS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQA 232 (521)
Q Consensus 157 ~~~~~~~s~~~-~v~~li~~iiG~GILslP~a~~~~G--~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~ 232 (521)
.+.+|+.+.++ .....++.++|.|++.+|......+ .. +.++..++..+..++...+.+..++.+|.+.|. ++
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~---~~ 84 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYA---KR 84 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeeh---hh
Confidence 35567788888 8999999999999999998876553 22 322222333344566666666555566666666 89
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhc--ccCcchhHHH
Q 044089 233 AFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVW--LRDLTLLSYI 310 (521)
Q Consensus 233 ~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~--l~~l~~l~~~ 310 (521)
.+|++..++..+...+..........+.....+..+++.... .... .....++...+++.+.+ .+..+...++
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~ln~~G~~~~~~~ 159 (466)
T COG0531 85 ALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGL----LSIG-PLLIILIALALIALLTLLNLRGIKASAKI 159 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh----hcCC-chHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999998899999988887777777888888888877764210 0000 01222222222222222 2344444444
Q ss_pred HHHHHHHHHHHHHhhhheeccccc----ccCCCC--cccCCCchhHHHHHHhhhcccccchhhhhhhccCCC-ChhhHHH
Q 044089 311 SVGGVITTGVVVLCLLWIGLVDAV----GFHPYG--TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK-KFPFVLM 383 (521)
Q Consensus 311 s~~~~~~~i~~~~~v~~~~~~~~~----~~~~~~--~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~-k~~~~~~ 383 (521)
..+..+..++..+.+...+..... ...... ....+..+..++....|+|.|.+...+..+|+|||+ ++||++.
T Consensus 160 ~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii 239 (466)
T COG0531 160 NSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAII 239 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHH
Confidence 444444433333222222211111 111100 112233577888889999999999999999999995 5899999
Q ss_pred HHHHHHHHHHHHHHHHHHhHccC
Q 044089 384 ISFVFCSLLNAGVGICGYLMFGD 406 (521)
Q Consensus 384 ~a~~i~~~~Y~~vg~~gy~~fG~ 406 (521)
.++.+++++|++.++......+.
T Consensus 240 ~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 240 LSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhCccH
Confidence 99999999999999888877765
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.54 E-value=1.5e-11 Score=131.74 Aligned_cols=245 Identities=11% Similarity=0.092 Sum_probs=137.3
Q ss_pred CCCCCCchHHHHHHHHHhh-hhhhhhHhHHH-HHhhcHH---HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVL-CGVGLLATPYA-IKEGGWS---SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQA 232 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~i-iG~GILslP~a-~~~~G~~---g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~ 232 (521)
+.+|+.|.++.+...++.+ +|+|+++++.. ...+|.. +.++..++.++...+..+|...++..+|.+.|. ++
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~---~~ 86 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWS---RR 86 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHH---HH
Confidence 4678899999999999985 89999998865 5667753 444444445555555555555555555555555 89
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCC-C-CCCcc-ccc-hhHHHHH-HHHHHHhhhcccCcchh
Q 044089 233 AFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSM-N-FGGLH-LDC-HKIFSIT-ATLVVLPTVWLRDLTLL 307 (521)
Q Consensus 233 ~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~-~-~~~~~-~~~-~~~~~i~-~~lii~pl~~l~~l~~l 307 (521)
++|++..++..|...+.....+..........+..+++.... . ..... ... .+.+.+. ..+++.-+.-.+..+..
T Consensus 87 ~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~ 166 (475)
T TIGR03428 87 MGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWM 166 (475)
T ss_pred HcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 999999999999987665444444444444444433221110 0 00000 000 1111111 11111111112244555
Q ss_pred HHHHHHHHHHHHHHHHhhhheec---ccccc--cCCC--CcccCC-CchhHHHHHHhhhcccccchhhhhhhccCCCC-h
Q 044089 308 SYISVGGVITTGVVVLCLLWIGL---VDAVG--FHPY--GTALDL-SNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-F 378 (521)
Q Consensus 308 ~~~s~~~~~~~i~~~~~v~~~~~---~~~~~--~~~~--~~~~~~-~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~ 378 (521)
++++.+.++..++.++.++..+. ..+.. +... +...++ ..+..+.....|+|.|.+....+.+|+|||+| .
T Consensus 167 ~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~i 246 (475)
T TIGR03428 167 SRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVA 246 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhh
Confidence 55554444333222221111111 11111 1111 111111 13444566678999999999999999999965 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHcc
Q 044089 379 PFVLMISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 379 ~~~~~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
||++..++.+++++|.+..+......+
T Consensus 247 Prai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 247 PRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999998887777666555444
No 45
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.53 E-value=5e-13 Score=142.90 Aligned_cols=356 Identities=15% Similarity=0.086 Sum_probs=215.5
Q ss_pred CCCCCCCchHHHHHHHHHhhhhhhhhH-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCC-CChHHHHHHH
Q 044089 157 LPPARKCSLAQSCLNGINVLCGVGLLA-TPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGL-TTYPDVGQAA 233 (521)
Q Consensus 157 ~~~~~~~s~~~~v~~li~~iiG~GILs-lP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~-~sY~~i~~~~ 233 (521)
.+.+|.++.++-.++.++.+||+|++. ...+.++.|-. -++..++.+...+++...++|..-+.|.. .++...+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 467889999999999999999999886 45568888877 45556777788888888888876666653 4455555999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCC-CCCCccccchhHHHH-HHHHHHHhhhccc---CcchhH
Q 044089 234 FGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSM-NFGGLHLDCHKIFSI-TATLVVLPTVWLR---DLTLLS 308 (521)
Q Consensus 234 fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~-~~~~~~~~~~~~~~i-~~~lii~pl~~l~---~l~~l~ 308 (521)
+|+.+.+++.|.+++.....+..-+...+.+++.+. .... .......+...++.+ +..++++-+...+ ..+...
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~-~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef~~ 184 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWT-GASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEFSL 184 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-ccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceeehH
Confidence 999999999999999999999999999999998886 1000 000001111111111 1122222222222 333333
Q ss_pred HHHHHHHHHHHHHHHhhhheeccccc--c------cCCC--CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-
Q 044089 309 YISVGGVITTGVVVLCLLWIGLVDAV--G------FHPY--GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK- 377 (521)
Q Consensus 309 ~~s~~~~~~~i~~~~~v~~~~~~~~~--~------~~~~--~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k- 377 (521)
.+..+-.+..+++...++..|..... + |+.+ ..+..+.++..++-+..|+|.|...+-...+|.|||+|
T Consensus 185 ~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~ 264 (554)
T KOG1286|consen 185 AFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKA 264 (554)
T ss_pred HHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCccc
Confidence 33333333333333334434433221 1 1211 22344789999999999999999999999999999976
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHccCCc---cch------hc--cCCCchhH---HHhHHHHHHHHhh--hhhccch
Q 044089 378 FPFVLMISFVFCSLLNAGVGICGYLMFGDSI---QSQ------FT--LNFPKEFV---ASKVAIWTTVLIP--MSKYAMT 441 (521)
Q Consensus 378 ~~~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~---~~~------i~--~n~p~~~~---~~~i~~~~~~i~~--~~s~pl~ 441 (521)
.|+++..++..++++|++..+.--++-.-+. .++ +. .+...-.. ...++.++.+.+. ...|+..
T Consensus 265 IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~s 344 (554)
T KOG1286|consen 265 IPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGS 344 (554)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhH
Confidence 9999999999999999999887554332111 111 11 11111111 1122222222222 2347777
Q ss_pred hchHHHHHHhhcCCC-ccccchhhhHHHHHHHH-HHHHHHhhcc-----cHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Q 044089 442 LTPIALSLEELMPSK-ELQSYSVSVIIRTILAI-STLVVALTLP-----YFGIVMSLIGSLLAMLITLIFPCVFYLKILQ 514 (521)
Q Consensus 442 ~~p~~~~le~~l~~~-~~~~~~~~~~~~~~~~~-~~~~va~~vp-----~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~ 514 (521)
+.-+..+.++++|+- ....++.+.....++.. ...+.++... .+..++++.|. +.++++.+=+++|++.++
T Consensus 345 R~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~ 422 (554)
T KOG1286|consen 345 RVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY 422 (554)
T ss_pred HHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence 777777888888875 11222223333333332 3333333322 24778888764 355677777777777555
Q ss_pred C
Q 044089 515 G 515 (521)
Q Consensus 515 ~ 515 (521)
-
T Consensus 423 a 423 (554)
T KOG1286|consen 423 A 423 (554)
T ss_pred c
Confidence 4
No 46
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.51 E-value=2e-11 Score=126.84 Aligned_cols=346 Identities=16% Similarity=0.148 Sum_probs=223.7
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhh-HhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhC
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLL-ATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GIL-slP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG 235 (521)
+.+|++...+-.++-++..||+|+| +.-.+++++|.. .++..++.|.+.++.+..|+|..-..|...++..++.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 4678899999999999999999976 577889999999 56668899999999999999988778866679999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhc--ccCcch----hHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVW--LRDLTL----LSY 309 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~--l~~l~~----l~~ 309 (521)
+-.++.+.|.+++.....+..-++..+..++.+++... + ...|..+..++++.+.+ .|...+ ++.
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v-~--------~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTV-P--------PWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCC-C--------hHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 99999999999999999999999999999988876431 1 22333333333333322 333322 222
Q ss_pred HHHHHHHHHHHHHHhhhheeccccc--c---cC-CCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhhHH
Q 044089 310 ISVGGVITTGVVVLCLLWIGLVDAV--G---FH-PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFVL 382 (521)
Q Consensus 310 ~s~~~~~~~i~~~~~v~~~~~~~~~--~---~~-~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~~ 382 (521)
+.++.++.-+++.+++++-+.-.+. + |+ +.....++.++...+-+..|+|.|.+.+--...|-+||+| +||++
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 2333333333333333333322211 1 12 2233445778888999999999999999999999999976 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--HccC----------CccchhccCCCc-----hhHHHhHHHHHHHHhhhhh--ccchhc
Q 044089 383 MISFVFCSLLNAGVGICGYL--MFGD----------SIQSQFTLNFPK-----EFVASKVAIWTTVLIPMSK--YAMTLT 443 (521)
Q Consensus 383 ~~a~~i~~~~Y~~vg~~gy~--~fG~----------~~~~~i~~n~p~-----~~~~~~i~~~~~~i~~~~s--~pl~~~ 443 (521)
.-.+.-+.++|++.-++--+ -|.| ...+++...+.+ -.-..+...++.+++...+ |.-.+.
T Consensus 272 k~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~ 351 (541)
T COG0833 272 KQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRM 351 (541)
T ss_pred HHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHH
Confidence 99999999999886554332 2322 122233332221 1112222333333333222 444445
Q ss_pred hHHHHHHhhcCCC-----ccccchhhhHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHHHHHHHHHHhC
Q 044089 444 PIALSLEELMPSK-----ELQSYSVSVIIRTILAISTLVVALTLP--YFGIVMSLIGSLLAMLITLIFPCVFYLKILQ 514 (521)
Q Consensus 444 p~~~~le~~l~~~-----~~~~~~~~~~~~~~~~~~~~~va~~vp--~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~ 514 (521)
-...+-++..|+- +.......+.++.++-+++++.+..-. .+.-++++.|.. .+++.+--++.|+|.+|
T Consensus 352 L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s--~~i~W~~I~~shirFR~ 427 (541)
T COG0833 352 LYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS--GFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 5555666777663 222233444445555455544444422 355666666643 44566677788888765
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.49 E-value=3.2e-11 Score=129.50 Aligned_cols=245 Identities=11% Similarity=0.015 Sum_probs=131.0
Q ss_pred CCCCCCchHHHHHHHHHhhhh--hhhhHhH-HHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCG--VGLLATP-YAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAA 233 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG--~GILslP-~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~ 233 (521)
+.+|+.+.++.+...++. +| +|++... .++.++|.. -+..+++.+++....+..+.|...+.|........++++
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~ 87 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKL 87 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHh
Confidence 457789999999888885 44 6776544 457778875 455566666666666666666655555544555555788
Q ss_pred hCh----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcc--cCcchh
Q 044089 234 FGI----TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWL--RDLTLL 307 (521)
Q Consensus 234 fG~----~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l--~~l~~l 307 (521)
+|+ ...++..|...+.....+.......++++..++...... .......... .++...+++....+ ...+.+
T Consensus 88 ~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 88 APPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPG-REYIPTRWHI-FGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCccccCchh-hhhHHHHHHHHHHHHHhhHhHH
Confidence 764 556777787766655555555555565555443211110 0000011111 11111111112222 233334
Q ss_pred HHHHHHHHHHHHHHHHhh----hheeccc--ccc--cCC-CCcccCC--C--chhHHHHHHhhhcccccchhhhhhhccC
Q 044089 308 SYISVGGVITTGVVVLCL----LWIGLVD--AVG--FHP-YGTALDL--S--NLPVTIGLYGFAYAGHSVFPNIYSSMQE 374 (521)
Q Consensus 308 ~~~s~~~~~~~i~~~~~v----~~~~~~~--~~~--~~~-~~~~~~~--~--~~~~a~~~~~faf~g~~~~~~i~~emk~ 374 (521)
++++.+..+..++..+.+ +..+... ... ++. .+...+| . .+..++....|+|.|.+....+.+|+||
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~kn 245 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIEN 245 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCC
Confidence 444433322222211111 1111000 000 000 0000011 1 2445556677999999999999999999
Q ss_pred CCC-hhhHHHHHHHHHHHHHHHHHHHHHhHcc
Q 044089 375 PKK-FPFVLMISFVFCSLLNAGVGICGYLMFG 405 (521)
Q Consensus 375 p~k-~~~~~~~a~~i~~~~Y~~vg~~gy~~fG 405 (521)
|+| +||++..++.++.++|++..+..+...+
T Consensus 246 P~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 246 PEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 965 9999999998887766555444443333
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.49 E-value=4.5e-11 Score=128.72 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=129.7
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHHHHH----HHHHHHHHHHhHhh-CCCCCChHHHHHHHh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGII----AFYTGILLQECLDS-APGLTTYPDVGQAAF 234 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~~~l----~~~t~~lL~~~~~~-~~~~~sY~~i~~~~f 234 (521)
+|++|+++.+...+++++|.+ .+|.++++.|..+++..++.+++ ...+..+|....+. .+|.+.|. ++++
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~---~~~~ 80 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWM---NKSV 80 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH---HHHc
Confidence 567999999999999999976 56888888887655555544433 34455556555554 45666666 8999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH-HhHHhhhccccCCC-CCCccccchhHHHHHHHHHHHhh--hcccCcchhHHH
Q 044089 235 GITGRLIVAIVLYLELFAASIEYLIMM-SDNLASLFPHTSMN-FGGLHLDCHKIFSITATLVVLPT--VWLRDLTLLSYI 310 (521)
Q Consensus 235 G~~~~~l~~~~~~~~~~g~~v~y~i~~-~~~l~~l~~~~~~~-~~~~~~~~~~~~~i~~~lii~pl--~~l~~l~~l~~~ 310 (521)
|++.+++..|................. ......++...... +............++..+.++.. ...+..+..+++
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i 160 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKV 160 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 999999877664433222111111000 00011111111000 00000111122222222222222 223455555555
Q ss_pred HHHHHHHHHH-----HHH-hhhheeccccc--ccC---C-CCcccCC---CchhHHHHHHhhhcccccchhhhhhhccCC
Q 044089 311 SVGGVITTGV-----VVL-CLLWIGLVDAV--GFH---P-YGTALDL---SNLPVTIGLYGFAYAGHSVFPNIYSSMQEP 375 (521)
Q Consensus 311 s~~~~~~~i~-----~~~-~v~~~~~~~~~--~~~---~-~~~~~~~---~~~~~a~~~~~faf~g~~~~~~i~~emk~p 375 (521)
+.++.+..++ +++ .+++....... +.. . +....++ .++..++....|+|.|++.+....+|+|||
T Consensus 161 ~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p 240 (496)
T PRK15238 161 TSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENP 240 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCC
Confidence 5443322221 111 11111100000 000 0 0001122 246667778899999999999999999999
Q ss_pred CC-hhhHHHHHHHHHHHHHHHHHHHHHh
Q 044089 376 KK-FPFVLMISFVFCSLLNAGVGICGYL 402 (521)
Q Consensus 376 ~k-~~~~~~~a~~i~~~~Y~~vg~~gy~ 402 (521)
+| +||++..+..+++++|++..++...
T Consensus 241 ~~~~p~ai~~~~~~~~~~y~l~~~~~~~ 268 (496)
T PRK15238 241 EKNFPKGIIIAAIVISIGYSLAIFLWGV 268 (496)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65 9999999999999999987655443
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.45 E-value=1.7e-10 Score=123.69 Aligned_cols=236 Identities=14% Similarity=0.167 Sum_probs=120.9
Q ss_pred CCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHHHH----HHHHHHHHHHHhHhhCCCCCChHHHHHHHhChh
Q 044089 162 KCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGI----IAFYTGILLQECLDSAPGLTTYPDVGQAAFGIT 237 (521)
Q Consensus 162 ~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~~~----l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~ 237 (521)
+++.+.-++..+..++| +..+|.+ ++.|...++.+++.++ ...++...|....++.+|.+.|. ++++|++
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~---~~a~G~~ 75 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWV---GEAFGAR 75 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeH---hhhcChh
Confidence 45666655555555544 4455755 5677655444444443 24556666666666667777777 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhc--ccCcchhHHHHHHH-
Q 044089 238 GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVW--LRDLTLLSYISVGG- 314 (521)
Q Consensus 238 ~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~--l~~l~~l~~~s~~~- 314 (521)
++++..|...+........-+...+..+..+.+.... .............+.+.+++.++. .+..+..+.++.+.
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~ 153 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATV--DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG 153 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc--CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 9999998876654322211111222222211111100 000001111211222222222222 23444444444322
Q ss_pred HHHHHHHHHhhhheec----ccc---cccCCC---CcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhhHHH
Q 044089 315 VITTGVVVLCLLWIGL----VDA---VGFHPY---GTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFVLM 383 (521)
Q Consensus 315 ~~~~i~~~~~v~~~~~----~~~---~~~~~~---~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~~~ 383 (521)
++..++.++.++..+. ..+ .+.+.. +...++..+..+. ...|+|.|++.+....+|+|||+| +||++.
T Consensus 154 ~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPrAi~ 232 (474)
T TIGR03813 154 IVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPIAIL 232 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhHHHH
Confidence 1111111111111110 111 111100 1111234443333 457899999999999999999965 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHccC
Q 044089 384 ISFVFCSLLNAGVGICGYLMFGD 406 (521)
Q Consensus 384 ~a~~i~~~~Y~~vg~~gy~~fG~ 406 (521)
.+..+++++|++..+......++
T Consensus 233 ~~~~~~~~~y~l~~~~~~~~~~~ 255 (474)
T TIGR03813 233 IAALGTVLIFVLGTLAIAFIIPR 255 (474)
T ss_pred HHHHHHHHHHHHHHHHHHhccCH
Confidence 99999999999987776555443
No 50
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.43 E-value=8.8e-11 Score=126.50 Aligned_cols=229 Identities=14% Similarity=0.174 Sum_probs=120.4
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHHHHH----HHHHHHHHHHhHh-hCCCCCChHHHHHHHh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIFGII----AFYTGILLQECLD-SAPGLTTYPDVGQAAF 234 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~~~l----~~~t~~lL~~~~~-~~~~~~sY~~i~~~~f 234 (521)
+|++|.+..++..+..++ ++..+| .+++.|+-.+..+++.+++ ...+..+|..... ..+|.+.|. +++|
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv---~~a~ 76 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWV---SNTL 76 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeeh---hhcc
Confidence 466899998888887776 456888 4667775444443333332 4555556655543 556777777 9999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhc--ccCcchhHHHHH
Q 044089 235 GITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVW--LRDLTLLSYISV 312 (521)
Q Consensus 235 G~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~--l~~l~~l~~~s~ 312 (521)
|++++++..|..++.........+......+..++... ....+ .....++..++++.+++ .+..+...+++.
T Consensus 77 G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~~~-~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~ 150 (507)
T TIGR00910 77 GERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFP-----ALNED-PIIKFIAALIIFWALAFSQFGGTKRTAKIAK 150 (507)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----hhccC-cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999987777665443222221111111122222110 00001 11111121222222222 233444444443
Q ss_pred HHHHHH-HHHHHhhh---heecccccc----cCCCCcccCCC--chhHHHHHHhhhcccccchhhhhhhccCCCC-hhhH
Q 044089 313 GGVITT-GVVVLCLL---WIGLVDAVG----FHPYGTALDLS--NLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFV 381 (521)
Q Consensus 313 ~~~~~~-i~~~~~v~---~~~~~~~~~----~~~~~~~~~~~--~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~ 381 (521)
++.+.. ++.++.++ ......+.. .+......++. +....+....|+|.|.+......+|+|||+| +||+
T Consensus 151 i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrA 230 (507)
T TIGR00910 151 AGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLA 230 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHH
Confidence 332211 11111111 111111110 11111111222 2344555678999999999999999999965 9999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 044089 382 LMISFVFCSLLNAGVGICG 400 (521)
Q Consensus 382 ~~~a~~i~~~~Y~~vg~~g 400 (521)
+..+.+++.++|.+.++..
T Consensus 231 i~~~~i~~~~l~~l~~~~i 249 (507)
T TIGR00910 231 MILLMIAAICLDAIGGFSI 249 (507)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998765543
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.40 E-value=1.9e-10 Score=116.86 Aligned_cols=278 Identities=17% Similarity=0.230 Sum_probs=191.1
Q ss_pred CCchHHHHHHHHHhhhhhhhhHhHHHHH-hh--cHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhH
Q 044089 162 KCSLAQSCLNGINVLCGVGLLATPYAIK-EG--GWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITG 238 (521)
Q Consensus 162 ~~s~~~~v~~li~~iiG~GILslP~a~~-~~--G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~ 238 (521)
++|..|.+..++.+++|+|++.+|.... ++ ||++.++-.+.+.+..+....+ .++.++ ++..++.++.+||+.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l---~~~~p~-~~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYL---LKRFPG-KTLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH---HHHCCC-CCHHHHHHHHhCcHH
Confidence 4789999999999999999999999864 44 5665444444444444444443 333444 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhh-ccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHH
Q 044089 239 RLIVAIVLYLELFAASIEYLIMMSDNLASL-FPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVIT 317 (521)
Q Consensus 239 ~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l-~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~ 317 (521)
+.++.....+..+..+...+...++.++.. +|+. ..+...+..+++.-....+.++.+.+.+.+....
T Consensus 77 g~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~T-----------P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 77 GKIINLLYILYFLLISALVLREFSEFIKTYLLPET-----------PIWVIILLFLLVAAYAARKGIEVIARVAEILFPI 145 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-----------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999988888888888888888888765 3332 2233333333344444456888888866555444
Q ss_pred HHHHHHhhhheecccccccC--CCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChhhHHHHHHHHHHHHHHH
Q 044089 318 TGVVVLCLLWIGLVDAVGFH--PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAG 395 (521)
Q Consensus 318 ~i~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~~i~~~~Y~~ 395 (521)
.++..+.+... ...+.+++ .+....++.++..+.....+.|.+...+..+...+|+|+|..|....+..+++++|..
T Consensus 146 ~~i~~~~i~~~-~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~ 224 (320)
T PF03845_consen 146 FLILLLLILLL-SIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLF 224 (320)
T ss_pred HHHHHHHHHHH-hcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 44333333322 22333333 2333456778888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHhHccCCccchhcc---------CCC---chhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCc
Q 044089 396 VGICGYLMFGDSIQSQFTL---------NFP---KEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKE 457 (521)
Q Consensus 396 vg~~gy~~fG~~~~~~i~~---------n~p---~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~ 457 (521)
.-+.....||.+...+... +++ +..-...+..| ....+.+..+..+.....+.+.++.++
T Consensus 225 ~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w--~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 225 IIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIW--IIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999654332211 112 00001122333 334567777888888888888887755
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.32 E-value=1.2e-11 Score=132.55 Aligned_cols=232 Identities=15% Similarity=0.161 Sum_probs=145.5
Q ss_pred HHHHhhhhhhhhH-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHHHHHH
Q 044089 171 NGINVLCGVGLLA-TPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYL 248 (521)
Q Consensus 171 ~li~~iiG~GILs-lP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~~~~~ 248 (521)
..++.++|+|++. .+.+..++|.. .++..++.+++...+...+.+...+.+....+...+++.+|+..++.+.|..++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 4578899999775 55678888886 566677777777777777777666666555666677999999999999999777
Q ss_pred HHHHHHHHHHHHHHhHHhhh--ccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHhhh
Q 044089 249 ELFAASIEYLIMMSDNLASL--FPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLCLL 326 (521)
Q Consensus 249 ~~~g~~v~y~i~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~~~~v~ 326 (521)
.............+..++.+ ++.....+ .+ .. .+.++..+++..+.+. ..+....+..+..+..++.++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPSTW---VW-GI-LIAIIFILLITLLNLF-GVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhccccccccccccc---cc-cc-hhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhhhHhhhhh
Confidence 76666666666666666555 33222000 00 00 1222222222222222 333333322222222111111111
Q ss_pred hee----ccc-ccccC------------C-----CCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-hhhHHH
Q 044089 327 WIG----LVD-AVGFH------------P-----YGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK-FPFVLM 383 (521)
Q Consensus 327 ~~~----~~~-~~~~~------------~-----~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k-~~~~~~ 383 (521)
..+ ... +.... . ++...++.++..++....++|.|.+......+|.|||+| .||++.
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 111 111 11100 0 011234778999999999999999999999999999976 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHccCCc
Q 044089 384 ISFVFCSLLNAGVGICGYLMFGDSI 408 (521)
Q Consensus 384 ~a~~i~~~~Y~~vg~~gy~~fG~~~ 408 (521)
.++...+++|++...+.-...+.+.
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCccc
Confidence 9999999999998887766666444
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.07 E-value=1.4e-09 Score=98.65 Aligned_cols=214 Identities=17% Similarity=0.211 Sum_probs=145.5
Q ss_pred CCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhh-------------C--CC---
Q 044089 162 KCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDS-------------A--PG--- 222 (521)
Q Consensus 162 ~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~-------------~--~~--- 222 (521)
..|..-+.....|-|+|+|.|++|.+|+.+||+ ++.++.+.+++++.+...+.+++.. + ..
T Consensus 11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~ 90 (319)
T KOG3832|consen 11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE 90 (319)
T ss_pred hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence 456667788899999999999999999999999 9999999999999999888665410 0 00
Q ss_pred --------------------------------------CCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 044089 223 --------------------------------------LTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDN 264 (521)
Q Consensus 223 --------------------------------------~~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~ 264 (521)
.-...+++...|.|.+-.+.-+++++++||-...|...+-..
T Consensus 91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs 170 (319)
T KOG3832|consen 91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFS 170 (319)
T ss_pred cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence 012246777788888888888899999999999998766655
Q ss_pred HhhhccccCC-------------C---CCCccc----cchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHHHHh
Q 044089 265 LASLFPHTSM-------------N---FGGLHL----DCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVVVLC 324 (521)
Q Consensus 265 l~~l~~~~~~-------------~---~~~~~~----~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~~~~ 324 (521)
+-++...... + ..+.-+ ..+.+.+|++.++.+|+.+. ++.+.++++++...+-....+.
T Consensus 171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~ 249 (319)
T KOG3832|consen 171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFIL 249 (319)
T ss_pred hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccc
Confidence 5444322110 0 001001 11244456666777788877 8888888887666554432222
Q ss_pred hhheecc--cccccCCCCcccCCCchhHHHHHHhhhcccccchhhhhhhccCCC
Q 044089 325 LLWIGLV--DAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPK 376 (521)
Q Consensus 325 v~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~ 376 (521)
.+..+.. ........++...+-++...++..+|+|.+|.+.|.....++.+.
T Consensus 250 g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 250 GISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 2222211 111112233445667788889999999999999999998887653
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.90 E-value=1.3e-06 Score=91.34 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=99.4
Q ss_pred chhHHHHHHhhhcccccchhhhhhhccCCC-ChhhHHHHHHHHHHHHHHHHHHHHHhHccCCccchhccCCC--------
Q 044089 347 NLPVTIGLYGFAYAGHSVFPNIYSSMQEPK-KFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFP-------- 417 (521)
Q Consensus 347 ~~~~a~~~~~faf~g~~~~~~i~~emk~p~-k~~~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p-------- 417 (521)
.+..++-...+.+.|......+.+|.||++ +.|+++..+..+..++=..+.+.-..+-+++....+..+..
T Consensus 253 afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~ 332 (550)
T KOG1289|consen 253 AFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYY 332 (550)
T ss_pred HHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHH
Confidence 455667778899999999999999999996 58999999999998888887777777777544433333322
Q ss_pred ----chhH--HHhHHHHHHHHhhhh-hccchhchHHHHHHhhcCCCcc------ccchhhhHHHHHHHHHHHHHHhhccc
Q 044089 418 ----KEFV--ASKVAIWTTVLIPMS-KYAMTLTPIALSLEELMPSKEL------QSYSVSVIIRTILAISTLVVALTLPY 484 (521)
Q Consensus 418 ----~~~~--~~~i~~~~~~i~~~~-s~pl~~~p~~~~le~~l~~~~~------~~~~~~~~~~~~~~~~~~~va~~vp~ 484 (521)
+... ...+..+...+.-.. ...-.+....-++++.+|..+. +.......+....+...++..+..++
T Consensus 333 ~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s 412 (550)
T KOG1289|consen 333 QALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILAS 412 (550)
T ss_pred HhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 1111 000111111110000 0111122223344667775411 11222233333333444444444565
Q ss_pred HHHHHHHHh-HHHHHHHHHHHHHHHHHHHhCCCCC
Q 044089 485 FGIVMSLIG-SLLAMLITLIFPCVFYLKILQGKIS 518 (521)
Q Consensus 485 ~~~vi~l~G-~~~~~~i~~ilP~l~~l~~~~~~~~ 518 (521)
...+-++++ ++....++|.+|..|-+-..|++.+
T Consensus 413 ~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~ 447 (550)
T KOG1289|consen 413 ATAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFR 447 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhheeecccccC
Confidence 555555544 5567889999999999988886443
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.90 E-value=1.5e-06 Score=85.33 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=140.7
Q ss_pred HHHHHHHHHhhhhhhhhHhHHH----HHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHH
Q 044089 166 AQSCLNGINVLCGVGLLATPYA----IKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLI 241 (521)
Q Consensus 166 ~~~v~~li~~iiG~GILslP~a----~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l 241 (521)
.+-.+..+++++|+| ++.-.- |..-|+-|...+++++.+-..++..+.+.. ++-+..+|.|+.++.+|++...+
T Consensus 6 ~~~~f~~ig~~vGAG-fAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig-~~f~a~~y~~~~~~v~~~~~~ki 83 (349)
T COG3949 6 MRWAFAFIGTVVGAG-FASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIG-KKFNATSYREILKYVSGPKFAKI 83 (349)
T ss_pred HHHHHHHHHHhhccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHhhHHHHHH
Confidence 345567788999999 455554 234566688888888888888888887754 34456899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHH-HHHHHHHHHhhhcccCcchhHHHHHHHHHHHHH
Q 044089 242 VAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIF-SITATLVVLPTVWLRDLTLLSYISVGGVITTGV 320 (521)
Q Consensus 242 ~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~ 320 (521)
.++.+.+.+++.+++-+.-.+..+.+-+.- +.++ +++..+++..+.++++.+.+-.+..+-+...++
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e~~~l------------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi 151 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEEMFGL------------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLII 151 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhCc------------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHH
Confidence 999999999999998888888787776532 2233 355556666666677676666555433333333
Q ss_pred HHHhhhheecccccccCC---CCcccCCCchhHHHHHHhhhc-ccccchhhhhhhccCCCChhhHHHHHHHHHHHHHHHH
Q 044089 321 VVLCLLWIGLVDAVGFHP---YGTALDLSNLPVTIGLYGFAY-AGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGV 396 (521)
Q Consensus 321 ~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~faf-~g~~~~~~i~~emk~p~k~~~~~~~a~~i~~~~Y~~v 396 (521)
..+.+.........++.. .+...+|... +++-..+.. .+..++.++-++|++++...++...+-.+.+++-.+.
T Consensus 152 ~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~--~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l~ 229 (349)
T COG3949 152 ILVLVTLSFQFTNLGNAAQIVLTKQGNWKAS--AVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFLI 229 (349)
T ss_pred HHHHHHHHHHHhhccchhhhcCCcCCChHHH--HHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHHH
Confidence 222222222222212111 1112233221 222222222 2445667777999998887776666666666666666
Q ss_pred HHHHHhHcc
Q 044089 397 GICGYLMFG 405 (521)
Q Consensus 397 g~~gy~~fG 405 (521)
+..-...++
T Consensus 230 nlsLi~~~~ 238 (349)
T COG3949 230 NLSLIALYD 238 (349)
T ss_pred HHHHHhhcc
Confidence 655444444
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.65 E-value=2.6e-05 Score=82.83 Aligned_cols=296 Identities=13% Similarity=0.041 Sum_probs=152.5
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKE--GGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~~~--~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
+|+.++++-...-.+..+...-+.+...... .++- +++..++..++.+.-..+....- .+.| -++..+.+..||.
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G-~r~G-l~~~v~sR~~FG~ 88 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAG-AKYG-LPFPVLSRASFGI 88 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhH-HHhC-CCcchhhhhhhhh
Confidence 3444655555554444444433333333222 2333 44444444444444444444322 2223 4677788999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCcc--cc-chhHHHHHHHHHHHhhhcccCcchhHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLH--LD-CHKIFSITATLVVLPTVWLRDLTLLSYISVG 313 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~--~~-~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~ 313 (521)
+|..+..++..+...+-......+.++.+..++........... .+ ......++..++.+++......+..++....
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~ 168 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWL 168 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999998888888888888888877766654432110000 00 1122233444444454444444444445554
Q ss_pred HHHHHHHHHHhhhheecccc-c-c-cCCC---CcccCCCchhHHHHHHh-hhcccccchhhhhhhccCCCChhhHHHHHH
Q 044089 314 GVITTGVVVLCLLWIGLVDA-V-G-FHPY---GTALDLSNLPVTIGLYG-FAYAGHSVFPNIYSSMQEPKKFPFVLMISF 386 (521)
Q Consensus 314 ~~~~~i~~~~~v~~~~~~~~-~-~-~~~~---~~~~~~~~~~~a~~~~~-faf~g~~~~~~i~~emk~p~k~~~~~~~a~ 386 (521)
+.+..+++.+.+++.....+ . + .+.. ........+..++...+ +.-..-.+.+...+.+|++++-.+....++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~~~ 248 (442)
T TIGR00800 169 AVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFLAL 248 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHHHH
Confidence 44443333322222211111 0 0 1111 11122334555555533 223444688999999999887777777788
Q ss_pred HHHHHHHHHHHHHHHhH----ccCCccchhc--cCCCch--hHHHh---HHHHHHHHhhh-hhccchhchHHHHHHhhcC
Q 044089 387 VFCSLLNAGVGICGYLM----FGDSIQSQFT--LNFPKE--FVASK---VAIWTTVLIPM-SKYAMTLTPIALSLEELMP 454 (521)
Q Consensus 387 ~i~~~~Y~~vg~~gy~~----fG~~~~~~i~--~n~p~~--~~~~~---i~~~~~~i~~~-~s~pl~~~p~~~~le~~l~ 454 (521)
....+...++|+.+-.. +|+...+... ..+... ..... ++.+..++..+ +.-..-.++....+.+.+|
T Consensus 249 ~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~ 328 (442)
T TIGR00800 249 PGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLP 328 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCc
Confidence 88888888888777765 7755433221 122111 10100 11112212222 3455567788888888887
Q ss_pred CCc
Q 044089 455 SKE 457 (521)
Q Consensus 455 ~~~ 457 (521)
+..
T Consensus 329 ~~~ 331 (442)
T TIGR00800 329 KYI 331 (442)
T ss_pred Ccc
Confidence 643
No 57
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.56 E-value=0.00011 Score=75.74 Aligned_cols=211 Identities=18% Similarity=0.198 Sum_probs=111.8
Q ss_pred HHHHhhhhhhhhHhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHHHH
Q 044089 171 NGINVLCGVGLLATPYAI-KEGG--WS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVL 246 (521)
Q Consensus 171 ~li~~iiG~GILslP~a~-~~~G--~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~~~ 246 (521)
.+..--+|+|.|-.|-.+ +++| |. +++.+++.++..-..+.+ +..+.+| +|.++. +.+||+..++..+.+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~gG--~~~~l~-~~~g~~f~~lf~~~~ 76 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVGG--GYDSLS-ARIGKVFGILFTVIL 76 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecCC--CHHHHH-HHhChHHHHHHHHHH
Confidence 345567899999999875 4666 34 666666666655555444 2233333 566665 577888888887776
Q ss_pred HHHHH-------HHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHH---HH
Q 044089 247 YLELF-------AASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGG---VI 316 (521)
Q Consensus 247 ~~~~~-------g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~---~~ 316 (521)
++... ...++|-+. +.++++... . .... .+..++.+-+++.=+++.-+....+| ..
T Consensus 77 ~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~------~---~~~l-~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 77 YLTIGPLFAIPRTATVSFEMG----IAPLLHSPT------S---LLAL-FIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHHhchhhhHHHHHHHHHH----HHhccCccc------c---hHHH-HHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 64422 122333322 445554211 0 1111 11222222221111444444444444 34
Q ss_pred HHHHHHHhhhheecccccccCC-CCcccCC-CchhHHHHHHhhhcc-------cccchhhhhh-hccCCCC-hhhHHHHH
Q 044089 317 TTGVVVLCLLWIGLVDAVGFHP-YGTALDL-SNLPVTIGLYGFAYA-------GHSVFPNIYS-SMQEPKK-FPFVLMIS 385 (521)
Q Consensus 317 ~~i~~~~~v~~~~~~~~~~~~~-~~~~~~~-~~~~~a~~~~~faf~-------g~~~~~~i~~-emk~p~k-~~~~~~~a 385 (521)
+.++.++.++..++....+... +.....- ..+..++-..-+.|. |+.++..+.+ ++|||+| .++++..+
T Consensus 143 ~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G 222 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAG 222 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4444444455555544322111 1111111 347777777888888 9999999999 9999975 55566555
Q ss_pred H-HHH--HHHHHHHHHHHH
Q 044089 386 F-VFC--SLLNAGVGICGY 401 (521)
Q Consensus 386 ~-~i~--~~~Y~~vg~~gy 401 (521)
+ ..+ ..+|...+..|.
T Consensus 223 ~ia~i~l~~vY~~L~~lGa 241 (378)
T TIGR00796 223 LIAAVLLAFIYLSLFYLGA 241 (378)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 5 344 444444444444
No 58
>PRK12488 acetate permease; Provisional
Probab=98.56 E-value=0.00017 Score=78.59 Aligned_cols=235 Identities=14% Similarity=0.086 Sum_probs=134.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHHHHHHHHHH-HHHHHHHhHhhCCCCCChHHHHHHHhC
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLFIFGIIAFY-TGILLQECLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl~~~~l~~~-t~~lL~~~~~~~~~~~sY~~i~~~~fG 235 (521)
-..|+.+++...+.+..+.+|++ .++.|......|+.++...+- ..+++. ...++.+-.+ +.+..|.+|..++-||
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g-~~~g~~~~~~~~a~~lr-~~g~~T~~d~l~~Rf~ 141 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALG-VLAGWPIILFLIAERLR-NLGKYTFADVVSYRLA 141 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHHHHHHHHHHHHH-HCCCcchHHHHHHHcC
Confidence 44788999999999999988887 678998877778765432221 111221 1233444444 4567999999998888
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHH
Q 044089 236 -ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGG 314 (521)
Q Consensus 236 -~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~ 314 (521)
|..|.+..++..+.........+...+..++.+++ .. ...-.++.+++++..+.+-.++...+...+.
T Consensus 142 s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g-i~----------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T PRK12488 142 QGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG-IS----------YLYAVVIVGALMVLYVTFGGMLATTWVQIIK 210 (549)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 56888888777666666666677777777777653 11 2233444555566666677899999998888
Q ss_pred HHHHHHHHHhhhheec--cc-cc--------ccCCC-----CcccCCCchhHHHH---HHhhhcccccchhhhhhhccCC
Q 044089 315 VITTGVVVLCLLWIGL--VD-AV--------GFHPY-----GTALDLSNLPVTIG---LYGFAYAGHSVFPNIYSSMQEP 375 (521)
Q Consensus 315 ~~~~i~~~~~v~~~~~--~~-~~--------~~~~~-----~~~~~~~~~~~a~~---~~~faf~g~~~~~~i~~emk~p 375 (521)
.+.+++..+.+.+... .. +. ..+.. .+...+......+. ...+++.|.+.+..=.-..||+
T Consensus 211 ~~im~~~~i~~~~~~l~~~g~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~lg~~~~p~~~qR~~aaks~ 290 (549)
T PRK12488 211 AVLLLSGTSFMAFMVLKHFGFSTEAMFASAVAVHAKGQAILAPGGLLSNPIDAISLGLGMMFGTAGLPHILMRFFTVSDA 290 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcCCcccccCHHHHHHHHHHHHHHhccCcHHHHHhhcCCCH
Confidence 6665543322211111 00 00 00000 00011111111111 1234445554444444455777
Q ss_pred CChhhHHHHHHHHHHHHHHHH---HHHHHhHcc
Q 044089 376 KKFPFVLMISFVFCSLLNAGV---GICGYLMFG 405 (521)
Q Consensus 376 ~k~~~~~~~a~~i~~~~Y~~v---g~~gy~~fG 405 (521)
|..+|...++..+..++|..+ |+.+...++
T Consensus 291 k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~l~~ 323 (549)
T PRK12488 291 REARKSVLYATGFIGYFYLLIIVVGFGAIVMVG 323 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888887766555555544 444555554
No 59
>PRK11375 allantoin permease; Provisional
Probab=98.51 E-value=0.00014 Score=77.96 Aligned_cols=274 Identities=15% Similarity=0.151 Sum_probs=135.6
Q ss_pred CChHHHHHHHhChhHHHHHHHHHH-HHHHHHHHHHHHHHHhHHhh----hccccCC---CCCCccccch-hHHHHHHHHH
Q 044089 224 TTYPDVGQAAFGITGRLIVAIVLY-LELFAASIEYLIMMSDNLAS----LFPHTSM---NFGGLHLDCH-KIFSITATLV 294 (521)
Q Consensus 224 ~sY~~i~~~~fG~~~~~l~~~~~~-~~~~g~~v~y~i~~~~~l~~----l~~~~~~---~~~~~~~~~~-~~~~i~~~li 294 (521)
-.+.-+.+..||.+|..+..++.. +...+-......+.++.+.. +++.... +......... ....++..++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 578889999999999888777763 34445455555555555553 3332211 0000111111 2222334455
Q ss_pred HHhhhcccCcchhHHHHHHHHHHHHHHHHhhh-heecccccc--cCCCCc-cc----CCCchhHHHHHHhhhcc-cccch
Q 044089 295 VLPTVWLRDLTLLSYISVGGVITTGVVVLCLL-WIGLVDAVG--FHPYGT-AL----DLSNLPVTIGLYGFAYA-GHSVF 365 (521)
Q Consensus 295 i~pl~~l~~l~~l~~~s~~~~~~~i~~~~~v~-~~~~~~~~~--~~~~~~-~~----~~~~~~~a~~~~~faf~-g~~~~ 365 (521)
..++.+. ..+.++++..++....++..+.+. +.....+.+ .+..+. .. ....+..++...+=++. +-.+.
T Consensus 169 ~~~~~~~-g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~ 247 (484)
T PRK11375 169 NVGIGFG-GGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSA 247 (484)
T ss_pred HHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccc
Confidence 5555543 666677666666555433222221 111111111 111111 00 11123333333333343 44588
Q ss_pred hhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHH----HhHccCCccch--hccCCCchhHHHhHHHHHHHHhhhhhc-
Q 044089 366 PNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICG----YLMFGDSIQSQ--FTLNFPKEFVASKVAIWTTVLIPMSKY- 438 (521)
Q Consensus 366 ~~i~~emk~p~k~~~~~~~a~~i~~~~Y~~vg~~g----y~~fG~~~~~~--i~~n~p~~~~~~~i~~~~~~i~~~~s~- 438 (521)
|...+..|++++..+.-.+++.+..++...+|++. ...+|+...+. +...+.. .....++.+..+++.+++-
T Consensus 248 ~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~a~~~tN~ 326 (484)
T PRK11375 248 SDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILMTTISTNA 326 (484)
T ss_pred cchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHH
Confidence 99999999988777766667777666665555443 45666544322 2222211 1222334444455555553
Q ss_pred cchhchHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHHhh--ccc---HHHHHHHHhHHHHHHHHHHH
Q 044089 439 AMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALT--LPY---FGIVMSLIGSLLAMLITLIF 504 (521)
Q Consensus 439 pl~~~p~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~va~~--vp~---~~~vi~l~G~~~~~~i~~il 504 (521)
..-.++....+.+.+|+...++ +...+. .++.++++.. +.+ |..++++.|++.....+..+
T Consensus 327 ~~N~ys~~~~l~~l~pk~i~~~--~~~~i~---~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 327 TGNIIPAGYQIAALAPTKLTYK--NGVLIA---SIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HhhcccHHHHHHHhCcCccchh--hHHHHH---HHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888889998752111 111111 1112222221 223 77788888887666554444
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.50 E-value=0.00022 Score=75.00 Aligned_cols=149 Identities=13% Similarity=0.026 Sum_probs=100.2
Q ss_pred CCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh-h
Q 044089 160 ARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI-T 237 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~-~ 237 (521)
.|+.+++...+.++.+.+|++ .++.|....+.|+.+....+...........+..+.. ++.+..|.+|+.+.-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIF-INNGAYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCchhHHHHHHhCchH
Confidence 467788888888888888876 6678887766676543332322333333444444544 345689999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHH
Q 044089 238 GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVIT 317 (521)
Q Consensus 238 ~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~ 317 (521)
.+.+..++..+......+..+...+..++.+++ .. .....++.+++++..+.+-.++...+...+..+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g-i~----------~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITG-LD----------LYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ch----------HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 777777776667777777777888888877763 11 2233444555555566677889999998888666
Q ss_pred HHH
Q 044089 318 TGV 320 (521)
Q Consensus 318 ~i~ 320 (521)
+++
T Consensus 150 ~~~ 152 (407)
T TIGR00813 150 MIL 152 (407)
T ss_pred HHH
Confidence 544
No 61
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.50 E-value=0.00034 Score=75.06 Aligned_cols=234 Identities=15% Similarity=0.038 Sum_probs=131.1
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHH-HHHHH--HHHHHHH-HHHHHHHHHhHhhCCCCCChHHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWS-SLSLL--FIFGIIA-FYTGILLQECLDSAPGLTTYPDVGQA 232 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~-g~ill--l~~~~l~-~~t~~lL~~~~~~~~~~~sY~~i~~~ 232 (521)
...|+.+++...+.+..+.+|++ +++.|....+.|+. ..... ...+.++ .+-+..+.+.. ++.+..|.+|+.++
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~T~~e~l~~ 115 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIIS-RKYNAITINDVLKA 115 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHH
Confidence 44778999999999999999987 55688766666653 11110 0111111 11122222222 45577999999999
Q ss_pred HhChh-HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHH
Q 044089 233 AFGIT-GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYIS 311 (521)
Q Consensus 233 ~fG~~-~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s 311 (521)
-||++ .+.+..+...+.+++..+.-+...+..++.+++ .+ .....++.+++++..+.+-.++...+..
T Consensus 116 Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GG~~av~~td 184 (471)
T TIGR02119 116 RYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG-LS----------YLTALFIFSSSVLIYTTFGGFRAVALTD 184 (471)
T ss_pred HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC----------HHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99965 466777776666666666666777777777653 11 2233444455566666777899999998
Q ss_pred HHHHHHHHHHHHhhhheeccccccc----------CC----CCcccCCC--chhHHHH-HHhhhcccccchhhhhhhccC
Q 044089 312 VGGVITTGVVVLCLLWIGLVDAVGF----------HP----YGTALDLS--NLPVTIG-LYGFAYAGHSVFPNIYSSMQE 374 (521)
Q Consensus 312 ~~~~~~~i~~~~~v~~~~~~~~~~~----------~~----~~~~~~~~--~~~~a~~-~~~faf~g~~~~~~i~~emk~ 374 (521)
.+..+.+++..+.+.........++ ++ +....++. .+..++. ...++..+.+....-.-..||
T Consensus 185 ~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~ 264 (471)
T TIGR02119 185 AIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKD 264 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCC
Confidence 8876665543322221111110000 00 00001111 1111221 122333344444445556677
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHhH
Q 044089 375 PKKFPFVLMISFVFCSLLNAGVGICGYLM 403 (521)
Q Consensus 375 p~k~~~~~~~a~~i~~~~Y~~vg~~gy~~ 403 (521)
++..+|....+..+..++++...+.|..+
T Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 265 SKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred HHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 77788888888777777776666666444
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.48 E-value=0.00018 Score=74.82 Aligned_cols=263 Identities=14% Similarity=0.099 Sum_probs=160.5
Q ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchh
Q 044089 228 DVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLL 307 (521)
Q Consensus 228 ~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l 307 (521)
.++++.||.++..+.++++.+.+.|-.....+..++..... +.+. ..++.++...++...+.. ..+.+
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~~----------~~~~ili~g~l~~l~~if-G~r~l 152 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGLP----------VWAGILIIGVLMTLVTIF-GYRAL 152 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCCc----------HHHHHHHHHHHHHHHHHH-hHHHH
Confidence 35688899999999999999999999999988888862211 1111 223334444444444443 55555
Q ss_pred HHHHHHHHHHHHHHHHhhhheecc--cccccCCCCcccCCCchhHHHHHHhhhcccc-cchhhhhhhccCCC--ChhhHH
Q 044089 308 SYISVGGVITTGVVVLCLLWIGLV--DAVGFHPYGTALDLSNLPVTIGLYGFAYAGH-SVFPNIYSSMQEPK--KFPFVL 382 (521)
Q Consensus 308 ~~~s~~~~~~~i~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~-~~~~~i~~emk~p~--k~~~~~ 382 (521)
..++..++...++..+..++.... +.........+..+.++..++....=.+..+ .......+-+|+|+ |.-...
T Consensus 153 ~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~ 232 (442)
T COG1457 153 HKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAA 232 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHH
Confidence 555555555444433333333222 1111223344667777888887766556555 56788888888887 666777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHccCCc-cchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCccccc
Q 044089 383 MISFVFCSLLNAGVGICGYLMFGDSI-QSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSY 461 (521)
Q Consensus 383 ~~a~~i~~~~Y~~vg~~gy~~fG~~~-~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~~ 461 (521)
..+......+-.++|.+...+-|+.. .......+.. ....+.+..+++.+++-..-+|+...+..+..++- ++
T Consensus 233 ~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l---~k 306 (442)
T COG1457 233 VLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKL---SK 306 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhh---hh
Confidence 77888888888888888888888776 4444444432 23345555666677777777888888887777652 23
Q ss_pred hhhhHHHHHHHHHHHHHHhh----cccHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 044089 462 SVSVIIRTILAISTLVVALT----LPYFGIVMSLIGSLLAMLITLIFPCVFYL 510 (521)
Q Consensus 462 ~~~~~~~~~~~~~~~~va~~----vp~~~~vi~l~G~~~~~~i~~ilP~l~~l 510 (521)
..+.....+. ..+++++. ..++...+.++|.......+..+--.+..
T Consensus 307 ~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~~ 357 (442)
T COG1457 307 VTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFIV 357 (442)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322 22333333 45788888888877655444444333333
No 63
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.46 E-value=0.00079 Score=72.45 Aligned_cols=233 Identities=15% Similarity=0.048 Sum_probs=126.9
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHH---HHHHHHH-HHHHHHHHHhHhhCCCCCChHHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLL---FIFGIIA-FYTGILLQECLDSAPGLTTYPDVGQA 232 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~ill---l~~~~l~-~~t~~lL~~~~~~~~~~~sY~~i~~~ 232 (521)
...|+.+++...+.+..+.+|++ .++.|....+.|+...... ...+.++ .+.+..+.+.. ++.+..|++|+.++
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~T~~e~l~~ 116 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILA-RKYNAVTLNDMLRA 116 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccHHHHHHH
Confidence 34677888888888888888875 6678866555564311111 1111111 12222233322 45577999999999
Q ss_pred HhChh-HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHH
Q 044089 233 AFGIT-GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYIS 311 (521)
Q Consensus 233 ~fG~~-~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s 311 (521)
-||++ .+.+..+...+..+......+...+..++.+++ .. .....++.+++++..+.+-.++...+..
T Consensus 117 Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g-i~----------~~~~iii~~~iv~iYt~~GGl~av~~TD 185 (483)
T PRK09442 117 RYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG-IS----------YETGLLIFGITVALYTAFGGFRAVVLTD 185 (483)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC----------HHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 99965 455555555555555556666677777776653 11 2233445555556677777999999988
Q ss_pred HHHHHHHHHHHHhhhheec--cccc-------c-cCC----CCcccCCCchhHHHH---HHhhhcccccchhhhhhhccC
Q 044089 312 VGGVITTGVVVLCLLWIGL--VDAV-------G-FHP----YGTALDLSNLPVTIG---LYGFAYAGHSVFPNIYSSMQE 374 (521)
Q Consensus 312 ~~~~~~~i~~~~~v~~~~~--~~~~-------~-~~~----~~~~~~~~~~~~a~~---~~~faf~g~~~~~~i~~emk~ 374 (521)
.+..+..++..+.+..... ..+. . .++ .....++......+. ...+...+++....=.-..|+
T Consensus 186 ~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks 265 (483)
T PRK09442 186 ALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKD 265 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCC
Confidence 8776665443322221111 1110 0 000 000111111111111 122333344433333344677
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHh
Q 044089 375 PKKFPFVLMISFVFCSLLNAGVGICGYL 402 (521)
Q Consensus 375 p~k~~~~~~~a~~i~~~~Y~~vg~~gy~ 402 (521)
+|..+|+..++..+..++++...+.|..
T Consensus 266 ~~~a~~~~~~~~~~~~~~~~~~~~~G~~ 293 (483)
T PRK09442 266 SKALHRGIIIGTIVVGFLMFGMHLAGAL 293 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888877777777766666643
No 64
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.42 E-value=0.00038 Score=72.55 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=147.4
Q ss_pred CChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccC
Q 044089 224 TTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRD 303 (521)
Q Consensus 224 ~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~ 303 (521)
-.+.-+.+..||++|..+..++..+...+-........++.+..+++..... .......++.+++.++.+.. .
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~------~~~~~~~~i~~~l~~~~~~~-G 130 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE------ESPMLWILIVGILVTLWLLS-G 130 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CchHHHHHHHHHHHHHHHHH-H
Confidence 4788899999999999999999888888888888888888888877542111 11222333334444444443 5
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhheec-ccccccCCCCcccCCCchhHHHHHHhhh-cccccchhhhhhhccCCCChhhH
Q 044089 304 LTLLSYISVGGVITTGVVVLCLLWIGL-VDAVGFHPYGTALDLSNLPVTIGLYGFA-YAGHSVFPNIYSSMQEPKKFPFV 381 (521)
Q Consensus 304 l~~l~~~s~~~~~~~i~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~fa-f~g~~~~~~i~~emk~p~k~~~~ 381 (521)
.+.++++..++....++..+.+.+... ..+.+..... +.+ ..+..++....-. -..-...+...+..|+|+|.-+.
T Consensus 131 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~ 208 (386)
T TIGR02358 131 PLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNR-AGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLG 208 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCC-CCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehH
Confidence 566666666665555443333222111 1111101111 111 2233333332211 12234578889999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHccCCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCccccc
Q 044089 382 LMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQSY 461 (521)
Q Consensus 382 ~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~~ 461 (521)
..+++.+...+-.++|.....+.++.....+..... ...++.+..++..+++-..-.++....+...+|+.. +
T Consensus 209 ~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~---~ 281 (386)
T TIGR02358 209 TVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG----LGIPALLIILLSTVTTTFMDIYSAAISTGNLLPRLK---V 281 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc---c
Confidence 888999999999999988877776542222222111 112333444445555566777888888888876532 1
Q ss_pred hhhhHHHHHHHHHHHHHHhh--cccHHHHHHHHhHHHHHHHHHHH
Q 044089 462 SVSVIIRTILAISTLVVALT--LPYFGIVMSLIGSLLAMLITLIF 504 (521)
Q Consensus 462 ~~~~~~~~~~~~~~~~va~~--vp~~~~vi~l~G~~~~~~i~~il 504 (521)
+++..+ ..++.++++.. ...+..++++.|.+.....+..+
T Consensus 282 ~~~~~i---~~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~i 323 (386)
T TIGR02358 282 KHLAIG---VGVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVVF 323 (386)
T ss_pred hHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122111 12222222222 23567777777776555444333
No 65
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.37 E-value=0.00094 Score=72.91 Aligned_cols=232 Identities=14% Similarity=0.143 Sum_probs=128.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhh-hhhHhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHHHhHhhCCCCCChHHHHHHHhC
Q 044089 158 PPARKCSLAQSCLNGINVLCGV-GLLATPYAIKEGGWSSLSLLFIFGIIAF-YTGILLQECLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~-GILslP~a~~~~G~~g~illl~~~~l~~-~t~~lL~~~~~~~~~~~sY~~i~~~~fG 235 (521)
-..|+.+++...+.+..+.+++ ..+..|......|+-++...+. ..+++ ....++.+-.+ +-+.+|.+|..++=||
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g-~~~~~~i~~~~~a~~lr-r~g~~T~~d~l~~Rf~ 141 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLG-FLVGWPIILFLIAERLR-NLGRYTFADVASYRLK 141 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHH-HHHHHHHHHHHHHHHHH-HcCCccHHHHHHHHcC
Confidence 3467788888777788887766 4778998777778765433321 11222 22344555554 4467999999998887
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHH
Q 044089 236 -ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGG 314 (521)
Q Consensus 236 -~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~ 314 (521)
|..|.+..+...+......+..+...+..++.+++- + ...-.++..++++..+.+-.++...+...+.
T Consensus 142 s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi---~--------~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T TIGR02711 142 QRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL---N--------YHVAVVLVGILMVMYVLFGGMLATTWVQIIK 210 (549)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---C--------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 556777666655555555566666677777766531 1 2233445555555666677888889988887
Q ss_pred HHHHHHHHHhhhhe-----e--cc---ccc-ccCCCC-cccC----CCchhHHHHH---HhhhcccccchhhhhhhccCC
Q 044089 315 VITTGVVVLCLLWI-----G--LV---DAV-GFHPYG-TALD----LSNLPVTIGL---YGFAYAGHSVFPNIYSSMQEP 375 (521)
Q Consensus 315 ~~~~i~~~~~v~~~-----~--~~---~~~-~~~~~~-~~~~----~~~~~~a~~~---~~faf~g~~~~~~i~~emk~p 375 (521)
.+.+++..+.+.+. + .. +.. ..++.. .... .......+.. ..+++.|++.+..=.-..||.
T Consensus 211 ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~taks~ 290 (549)
T TIGR02711 211 AVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFTVSDA 290 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeeeecCCH
Confidence 66554332222111 1 10 000 000000 0001 1111112221 223444443333222345677
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHh
Q 044089 376 KKFPFVLMISFVFCSLLNAGVGICGYL 402 (521)
Q Consensus 376 ~k~~~~~~~a~~i~~~~Y~~vg~~gy~ 402 (521)
|..+|...++..+..++|+..-+.|+.
T Consensus 291 k~ar~s~~~~~~~~~~~~~~~~~~G~~ 317 (549)
T TIGR02711 291 KEARKSVFYATGFMGYFYILTFIIGFG 317 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888877777777665555543
No 66
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.37 E-value=0.00015 Score=76.13 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=90.8
Q ss_pred CCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhH
Q 044089 160 ARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITG 238 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~ 238 (521)
.|+.+++...+.++.+.+|++ +++.|....+.|+.+....+............+.+.++ +.+..|.+|+.++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLR-RSGAVTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHH-HTT--SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhc-ccchhhhhhhhhhhcCCch
Confidence 567889999999999988886 77888887777766433333333333444455556554 5567899999999999998
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHH
Q 044089 239 --RLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVI 316 (521)
Q Consensus 239 --~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~ 316 (521)
+.+..+..++.........+...+..++.+++ .. .....++..++++..+.+-.++...+...+..+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~----------~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IP----------YNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccc-hh----------hhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 66666555555656667777778888777764 11 234445556666667777788888888877766
Q ss_pred HHHH
Q 044089 317 TTGV 320 (521)
Q Consensus 317 ~~i~ 320 (521)
.+++
T Consensus 153 i~~~ 156 (406)
T PF00474_consen 153 IMII 156 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 67
>PRK09395 actP acetate permease; Provisional
Probab=98.33 E-value=0.0013 Score=71.87 Aligned_cols=151 Identities=13% Similarity=0.057 Sum_probs=96.3
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhC-
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFG- 235 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG- 235 (521)
...|+.+++...+.+..+.+|++ .++.|......|+.+....+-..+.......++.+-.+ +.+.+|++|+.+.-||
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r-~~g~~T~~d~l~~Rygs 144 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLR-NLGKYTFADVASYRLKQ 144 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHcCC
Confidence 44778888888888888888876 67899887777876533222111111222333444443 4567999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGV 315 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~ 315 (521)
|..|.+..++..+.........+...+..++.+++ . + .....++.+++++..+.+-.++...+...+..
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g-i--~--------~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~ 213 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG-L--N--------YHVAVVLVGVLMMVYVLFGGMLATTWVQIIKA 213 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C--C--------HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 55788877766555555555556666666666653 1 1 23334455555666666778888888888776
Q ss_pred HHHHH
Q 044089 316 ITTGV 320 (521)
Q Consensus 316 ~~~i~ 320 (521)
+.++.
T Consensus 214 iim~~ 218 (551)
T PRK09395 214 VLLLS 218 (551)
T ss_pred HHHHH
Confidence 55443
No 68
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.29 E-value=0.0025 Score=68.65 Aligned_cols=150 Identities=19% Similarity=0.101 Sum_probs=103.9
Q ss_pred CCCCCCchHHHHHHHHHhhhh-hhhhHhHHHHHhhcHHHHHHHH----HHHHHHHHHHHHHHHhHhhCCCCCChHHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCG-VGLLATPYAIKEGGWSSLSLLF----IFGIIAFYTGILLQECLDSAPGLTTYPDVGQA 232 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG-~GILslP~a~~~~G~~g~illl----~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~ 232 (521)
...|+.+.+-..+...-+.++ .-++++|....+.|+.++...+ ...+...+-...+.+.. +..+..|.+|+.++
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~ 113 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEA 113 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHH
Confidence 345666666566666666666 6688999998888876333322 33344444445555544 67788999999999
Q ss_pred HhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHH
Q 044089 233 AFG-ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYIS 311 (521)
Q Consensus 233 ~fG-~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s 311 (521)
-|| +..|.+..++..+.....+..-+...+..++..++ .. ...-.++.+.+++..+.+-.++.+.+..
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~----------~~~~~~~~~~~v~~Yt~~gG~~av~~Td 182 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS----------YVTGILIGALIVALYTFLGGLRAVVWTD 182 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC----------HHHHHHHHHHHHHHHHHHcChhHHHHHH
Confidence 999 89999999999999889899899999988866664 22 2233334455555566666888888887
Q ss_pred HHHHHHHH
Q 044089 312 VGGVITTG 319 (521)
Q Consensus 312 ~~~~~~~i 319 (521)
.+.-..++
T Consensus 183 ~iqg~im~ 190 (493)
T COG0591 183 FIQGLIML 190 (493)
T ss_pred HHHHHHHH
Confidence 66655444
No 69
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.20 E-value=0.0047 Score=66.81 Aligned_cols=151 Identities=13% Similarity=0.007 Sum_probs=91.4
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHHHHHHHHH-HHHHHHH----HhHhhCCCCCChHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLFIFGIIAF-YTGILLQ----ECLDSAPGLTTYPDVGQ 231 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl~~~~l~~-~t~~lL~----~~~~~~~~~~sY~~i~~ 231 (521)
...|+.+++...+.+..+.+++. .++.|....+.|+.+....+ ...+.. ....++. .-..+..+..|.+|..+
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~ 115 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAI-GLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFT 115 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHH
Confidence 44788999999999998888887 56788877777865422111 111111 1112221 11123567789999999
Q ss_pred HHhChh---HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhH
Q 044089 232 AAFGIT---GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLS 308 (521)
Q Consensus 232 ~~fG~~---~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~ 308 (521)
+-||++ .+.+..++..+.....+..-+...+..++.+++ . + .....++.+++++..+.+-.++...
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g-i--~--------~~~~iii~~~iv~iYt~~GGl~aV~ 184 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG-M--S--------YETALWAGAAATILYTFIGGFLAVS 184 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C--C--------HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999964 344444444444444444445555666666553 1 1 2234455556666677777899999
Q ss_pred HHHHHHHHHHHH
Q 044089 309 YISVGGVITTGV 320 (521)
Q Consensus 309 ~~s~~~~~~~i~ 320 (521)
+.-.+..+.+++
T Consensus 185 ~TD~iQ~~imi~ 196 (502)
T PRK15419 185 WTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHH
Confidence 998888766543
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=98.17 E-value=0.0026 Score=66.74 Aligned_cols=258 Identities=15% Similarity=0.141 Sum_probs=129.5
Q ss_pred CChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccC
Q 044089 224 TTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRD 303 (521)
Q Consensus 224 ~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~ 303 (521)
-++.-+.+..||.+|..+..++..+...+-........+..+..+++ .. .. ...++..++..+..+. .
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~---------~~-~~~~i~~~l~~~~~~~-G 138 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LD---------IN-LLIVLSGLLMTVTAYF-G 138 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CC---------HH-HHHHHHHHHHHHHHHH-H
Confidence 57888999999999999988887777666666666666666665543 11 11 1333334444444443 3
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhheecccccccC--CCCcccCCCchhHHHHHHhhhc-ccccchhhhhhhccCCCChhh
Q 044089 304 LTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFH--PYGTALDLSNLPVTIGLYGFAY-AGHSVFPNIYSSMQEPKKFPF 380 (521)
Q Consensus 304 l~~l~~~s~~~~~~~i~~~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~faf-~g~~~~~~i~~emk~p~k~~~ 380 (521)
.+.++++..++....++..+...+.......+++ ....+.....+..++...+=.+ ..-.+.+...+..|++++.-.
T Consensus 139 ~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~ 218 (404)
T PRK11017 139 ISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVL 218 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceee
Confidence 4445555544444333322222211111111111 0111112235555665544333 345688899999998887666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHccCCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCcccc
Q 044089 381 VLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQS 460 (521)
Q Consensus 381 ~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~ 460 (521)
....++.+..++-.++|...-.+.|+......... ... .....+...++..++-....+....++.+..+. +
T Consensus 219 ~~~lg~~i~~~~~~~~G~~~a~~~~~~d~~~~~~~--~~~--~~~~l~~~~l~~~t~n~~~~ys~~l~~~~l~~~----~ 290 (404)
T PRK11017 219 ATMVAFFLGNSLMFIFGAAGAAVYGQADISDVMIA--QGL--LIPAIVMLGLNIWTTNDNALYASGLGFCNITRL----S 290 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH--hch--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC----c
Confidence 66777777777777777776667765322222111 111 112223333344444444445544555554321 1
Q ss_pred chhhhHHHHHHHHHHHHHHh-hcccHHHHHHHHhHHHHHHHHHHH
Q 044089 461 YSVSVIIRTILAISTLVVAL-TLPYFGIVMSLIGSLLAMLITLIF 504 (521)
Q Consensus 461 ~~~~~~~~~~~~~~~~~va~-~vp~~~~vi~l~G~~~~~~i~~il 504 (521)
++... .+..++.++++. +..++...+++.|.+.....+..+
T Consensus 291 ~~~~~---ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P~~gI~i 332 (404)
T PRK11017 291 SRTLT---VVNGIIGTVLALWLYNNFVGWLTLLGSAIPPVGGVII 332 (404)
T ss_pred chHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhh
Confidence 11111 112222222222 234567777777766555444433
No 71
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.09 E-value=0.016 Score=62.50 Aligned_cols=153 Identities=16% Similarity=0.089 Sum_probs=90.0
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhh----CCCCCChHHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDS----APGLTTYPDVGQA 232 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~----~~~~~sY~~i~~~ 232 (521)
-..|+.+++-..+.+..+.+++. +++.|......|+.+....+...+........+.+-.++ +.+..|.+|+.++
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~ 112 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFEN 112 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHH
Confidence 34778889888888888877765 566887766667754322221112122223334333331 5577899999999
Q ss_pred HhChh---HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHH
Q 044089 233 AFGIT---GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSY 309 (521)
Q Consensus 233 ~fG~~---~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~ 309 (521)
-||++ .+.+..++..+........-+...+..++.+++ .. .....++..++++..+.+-.++...+
T Consensus 113 Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g-i~----------~~~~iii~~~i~~~Yt~~GGl~av~~ 181 (487)
T TIGR02121 113 RFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG-LD----------YKTGLLIGALIIVIYTFFGGFLAVSW 181 (487)
T ss_pred HhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----------HHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99954 333444443333333344445555666666543 11 22334455555666666778889988
Q ss_pred HHHHHHHHHHHH
Q 044089 310 ISVGGVITTGVV 321 (521)
Q Consensus 310 ~s~~~~~~~i~~ 321 (521)
...+..+.+++.
T Consensus 182 TD~iQ~~i~~~~ 193 (487)
T TIGR02121 182 TDFVQGLLMFFA 193 (487)
T ss_pred HHHHHHHHHHHH
Confidence 888876665543
No 72
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.06 E-value=0.012 Score=64.39 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=94.5
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
...|+.+++...+.+..+.++++ .++.|......|+.+....+-..+.......++..-.+ +.+..|-+|+-++-||+
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~r-r~~~~T~~e~l~~Rf~s 107 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLR-KFGKYTVPDFIGDRYYS 107 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCccHHHHHHHHhCC
Confidence 44778999999999998888775 77888876666765433322111111223345555554 44678999988888985
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHH
Q 044089 237 T-GRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGV 315 (521)
Q Consensus 237 ~-~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~ 315 (521)
+ .+.+..+...+.........+...+..++.+++ . + .....++.+++++..+.+-.++...+.-.+..
T Consensus 108 ~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g-i--~--------~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ 176 (552)
T TIGR03648 108 NTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE-V--D--------FETGVFIGMAIVFFYAVLGGMKGVTWTQVAQY 176 (552)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C--C--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4 577666665555555555556666666666653 1 1 22334444555555666678888888887775
Q ss_pred HHHH
Q 044089 316 ITTG 319 (521)
Q Consensus 316 ~~~i 319 (521)
+.++
T Consensus 177 iim~ 180 (552)
T TIGR03648 177 IVLI 180 (552)
T ss_pred HHHH
Confidence 5544
No 73
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.05 E-value=0.011 Score=62.07 Aligned_cols=292 Identities=16% Similarity=0.165 Sum_probs=136.8
Q ss_pred CChHHHHHHHhChhHHHH---HHHHHHHHHHHHHHH-HHHHHHhHHhhhccccCCCCC-C--ccccchhHHHHHHHHHHH
Q 044089 224 TTYPDVGQAAFGITGRLI---VAIVLYLELFAASIE-YLIMMSDNLASLFPHTSMNFG-G--LHLDCHKIFSITATLVVL 296 (521)
Q Consensus 224 ~sY~~i~~~~fG~~~~~l---~~~~~~~~~~g~~v~-y~i~~~~~l~~l~~~~~~~~~-~--~~~~~~~~~~i~~~lii~ 296 (521)
-.|+.+++..||-+|..+ ...+..+..||.-+- --..+.-.|..+++....+.. . .......+...+..-++-
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~ 182 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQ 182 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHH
Confidence 589999999999887643 333333333333221 011222233444544221111 0 011112222222222233
Q ss_pred hhhcccCcchhHHHHHHHHHHHHHHHHhhh-heeccccc---ccCCC-CcccCCCchhHHHHHHhhhcc----cccchhh
Q 044089 297 PTVWLRDLTLLSYISVGGVITTGVVVLCLL-WIGLVDAV---GFHPY-GTALDLSNLPVTIGLYGFAYA----GHSVFPN 367 (521)
Q Consensus 297 pl~~l~~l~~l~~~s~~~~~~~i~~~~~v~-~~~~~~~~---~~~~~-~~~~~~~~~~~a~~~~~faf~----g~~~~~~ 367 (521)
.++..+..+.++++-.+.-.++.++++.+. |.....+. ..+.+ ............+........ ..-|+|.
T Consensus 183 ~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~D 262 (497)
T COG1953 183 LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPD 262 (497)
T ss_pred HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCch
Confidence 344456788888887666555554443332 22211111 11111 111121222222222222222 3357888
Q ss_pred hhhhccCCCChhh----HHHHHHHHHHHHHHHHHHHHHhHccCCccc--hhccCCCchhHHHhHHHHHH-HHhhhhhccc
Q 044089 368 IYSSMQEPKKFPF----VLMISFVFCSLLNAGVGICGYLMFGDSIQS--QFTLNFPKEFVASKVAIWTT-VLIPMSKYAM 440 (521)
Q Consensus 368 i~~emk~p~k~~~----~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~--~i~~n~p~~~~~~~i~~~~~-~i~~~~s~pl 440 (521)
..+.-|+|+...+ .+.+.+.+..++=+.++..++..||+...+ ++...++.......++.++. +.++-+...-
T Consensus 263 FsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~a 342 (497)
T COG1953 263 FTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAA 342 (497)
T ss_pred hhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHh
Confidence 8888888765333 333444444444444555677889988554 45566665443331222222 2223333444
Q ss_pred hhchHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCC
Q 044089 441 TLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKI 517 (521)
Q Consensus 441 ~~~p~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~ 517 (521)
-..+...-+..++|+.-..++.-.+...+.+++.++-+--.-..+...++..|++.+.+.+..+-- |+.++|++.
T Consensus 343 N~vsp~~D~s~l~Pk~in~krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaD--yflirk~~~ 417 (497)
T COG1953 343 NIVSPGYDLSALFPKYINIKRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIAD--YFLVRKGRL 417 (497)
T ss_pred ccCChHHHHHHhcccccchhhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHH--HHhhhcCcc
Confidence 455666666777887532222212222222222222222222357778888888888877766644 444445554
No 74
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=98.04 E-value=0.002 Score=69.49 Aligned_cols=111 Identities=20% Similarity=0.298 Sum_probs=79.5
Q ss_pred CCCchHHHHHHHHHhhhhhhhhH-hHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhh--CCCCCChHHHHHHHhCh
Q 044089 161 RKCSLAQSCLNGINVLCGVGLLA-TPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDS--APGLTTYPDVGQAAFGI 236 (521)
Q Consensus 161 ~~~s~~~~v~~li~~iiG~GILs-lP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~--~~~~~sY~~i~~~~fG~ 236 (521)
+-.+....++-.+..|.|.=.|. +-+.+..+|.. |.++++++++.+..|..-+...+.+ -+...+|.-|. +.+|+
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmIS-RsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMIS-RSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEe-cccCc
Confidence 33556666677788888886554 77888899999 9999999999998888877665432 33345787555 56777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh-hcccc
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLAS-LFPHT 272 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~-l~~~~ 272 (521)
-.+-.+.+++++-...+...|++-..+.+-. ++|..
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~a 228 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAA 228 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHh
Confidence 6666777777777667777788877776643 66543
No 75
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.00 E-value=0.0003 Score=75.01 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=111.7
Q ss_pred HhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHh--hCCCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH
Q 044089 183 ATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLD--SAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLI 259 (521)
Q Consensus 183 slP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~--~~~~~~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i 259 (521)
=.++.+.++|.+ .+..+++.-.+..+|..-++.... ...|...|..+. +.+|+-.+--+..+.++-....|..++.
T Consensus 89 R~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymIS-RsLGpEfGGSIGllFf~anV~~~am~is 167 (945)
T KOG1288|consen 89 RFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMIS-RSLGPEFGGSIGLLFFVANVFNCAMNIS 167 (945)
T ss_pred HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEE-cccCcccCCeeeehhhHHHHhcchhhhh
Confidence 356667788888 777777766777777666544321 122345666544 3445433223344444445555666777
Q ss_pred HHHhHHhhhccccC-CCCCCccccchhHHHHHHHH----HHHhhhcccCcchhHHHHHHHHHHHHHHHHhh----hheec
Q 044089 260 MMSDNLASLFPHTS-MNFGGLHLDCHKIFSITATL----VVLPTVWLRDLTLLSYISVGGVITTGVVVLCL----LWIGL 330 (521)
Q Consensus 260 ~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~i~~~l----ii~pl~~l~~l~~l~~~s~~~~~~~i~~~~~v----~~~~~ 330 (521)
-+.+-+-..|+.-. ...+...+....+|-++..- +++.+|++ .-.-.++.+.+-++.+......+ ++.+-
T Consensus 168 G~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~l-GsalfAkas~i~f~~is~s~~si~iS~ifvgp 246 (945)
T KOG1288|consen 168 GFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLL-GSALFAKASNILFVVISVSLFSIPISFIFVGP 246 (945)
T ss_pred hhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHh-hHHHHHhhhhhhhhHHHHHHhhhhheeEEecc
Confidence 66666655554221 11222233333334333222 22233333 22333333333222222212222 22222
Q ss_pred cccc-cc-------------CCCC------------------cccCCCchhHHHHHHhhhcccccchhhhhhhccCCCC-
Q 044089 331 VDAV-GF-------------HPYG------------------TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK- 377 (521)
Q Consensus 331 ~~~~-~~-------------~~~~------------------~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k- 377 (521)
.+.. +. +..+ +..+..++...|+++.=+=.|..-=-++-+|+|+|+|
T Consensus 247 ~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkS 326 (945)
T KOG1288|consen 247 FKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKS 326 (945)
T ss_pred ccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCcccc
Confidence 1111 00 0000 0011234445566655555565555678899999976
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHh
Q 044089 378 FPFVLMISFVFCSLLNAGVGICGYL 402 (521)
Q Consensus 378 ~~~~~~~a~~i~~~~Y~~vg~~gy~ 402 (521)
.|+-.+.++...+++|+++.+.--.
T Consensus 327 IP~GTl~ava~Tf~~Yvl~~flm~~ 351 (945)
T KOG1288|consen 327 IPKGTLSAVAFTFFVYVLVIFLMGC 351 (945)
T ss_pred CCccchHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999998876443
No 76
>PRK10484 putative transporter; Provisional
Probab=97.94 E-value=0.023 Score=61.83 Aligned_cols=161 Identities=14% Similarity=0.055 Sum_probs=86.3
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
-..|+.+++-..+.+..+.++++ .++.|....+.|+..+......++........+..-.+ +.+..|.+|+.++-||+
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~T~~e~l~~Ryg~ 113 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYL-KSGITTIPDFLEERYDK 113 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCccHHHHHHHhcCc
Confidence 44788999988888888888776 66788776666765322211111111123333333333 45778999999999999
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHhHHhhhccccCCCCCCccccchhHH-HHHHHHHHHhhhcccCcchhHHHHHHH
Q 044089 237 TGRLIVAIVLYLELFAA-SIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIF-SITATLVVLPTVWLRDLTLLSYISVGG 314 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~-~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~i~~~lii~pl~~l~~l~~l~~~s~~~ 314 (521)
+.+.+...+..+..... +...+...+-.+..++.... ..+.......+. .++..++++..+.+-.++...+.-.+.
T Consensus 114 ~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~--~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD~iQ 191 (523)
T PRK10484 114 TTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSE--LLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAVSDTIN 191 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--hcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 88776665543332222 22222222333333321100 011111001111 122234445566667889999998888
Q ss_pred HHHHHHH
Q 044089 315 VITTGVV 321 (521)
Q Consensus 315 ~~~~i~~ 321 (521)
.+.+++.
T Consensus 192 ~vim~i~ 198 (523)
T PRK10484 192 GIGLLIG 198 (523)
T ss_pred HHHHHHH
Confidence 6665443
No 77
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.89 E-value=0.0089 Score=62.49 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=85.6
Q ss_pred CCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHH---HHHHHHHHHHHHHHHhHhhCCCCCCh-----HHHH
Q 044089 160 ARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLF---IFGIIAFYTGILLQECLDSAPGLTTY-----PDVG 230 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl---~~~~l~~~t~~lL~~~~~~~~~~~sY-----~~i~ 230 (521)
++++|.+|+.+..+.+.+|+| |+.+|.+++.+|.-++..+- +++..+.|.-..|..-.++++++.+| ..+-
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 356999999999999999998 99999998777733533333 44444555555555555545554557 6777
Q ss_pred HHHhChhHHHHHHHHHHHHHHH-HHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHH
Q 044089 231 QAAFGITGRLIVAIVLYLELFA-ASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSY 309 (521)
Q Consensus 231 ~~~fG~~~~~l~~~~~~~~~~g-~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~ 309 (521)
+...|||...+..++ ++..++ ........+++.++..+. .+ .....++.+ ++.-...+..++.+..
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~----------~~-~~v~~i~l~-~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN----------VP-KLVTGIVLT-VLTALIIFGGLKRIAK 190 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC----------Cc-HHHHHHHHH-HHHHHHHhcCchHHHH
Confidence 777888877777666 333222 223233333344442221 11 222233322 2222334457777777
Q ss_pred HHHHHHHHHH
Q 044089 310 ISVGGVITTG 319 (521)
Q Consensus 310 ~s~~~~~~~i 319 (521)
++...+..+.
T Consensus 191 v~~~lvP~m~ 200 (425)
T TIGR00835 191 ISSVVVPFMA 200 (425)
T ss_pred HHHHHHHHHH
Confidence 7765555544
No 78
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.73 E-value=0.00052 Score=72.89 Aligned_cols=339 Identities=14% Similarity=0.054 Sum_probs=150.6
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHHHHHh--hcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPYAIKE--GGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~a~~~--~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
+|+.++++-+..-.+..+....+.+-..... .++- +++.+++..++...-..+....- .+.| .++..+++..||.
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G-~r~G-l~~~v~sR~~FG~ 83 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIG-PRTG-LPTMVLSRASFGY 83 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHH-HCC----HHHHTTTTS-T
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccc-cccC-CCchhcchhccCc
Confidence 3344566666655555555554444443322 2334 55555555555555555555433 3334 4677889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCcc-----ccchh-HHHHHHHHHHHhhhcccCcchhHHH
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLH-----LDCHK-IFSITATLVVLPTVWLRDLTLLSYI 310 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~-----~~~~~-~~~i~~~lii~pl~~l~~l~~l~~~ 310 (521)
+|..+..++..+...+-......+.++.+..++......+.... ..... ...++..++..+..+ ...+.++.+
T Consensus 84 ~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~g~~~l~~~ 162 (440)
T PF02133_consen 84 RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAI-YGMKALRRL 162 (440)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHC-THHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHh-cCHHHHHhH
Confidence 99999999988888888888888999999888765421000000 00011 111122222222222 244445444
Q ss_pred HHHHHHHHHHHHHh-hhheecccccc--cCCCCcccCCCchhHHHHHHhhhccc-ccchhhhhhhccCCCChhhHHHHHH
Q 044089 311 SVGGVITTGVVVLC-LLWIGLVDAVG--FHPYGTALDLSNLPVTIGLYGFAYAG-HSVFPNIYSSMQEPKKFPFVLMISF 386 (521)
Q Consensus 311 s~~~~~~~i~~~~~-v~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~faf~g-~~~~~~i~~emk~p~k~~~~~~~a~ 386 (521)
..+.........+. ..+.....+.+ .+..........+..++....-.+.. ..+.+...+.+|++++-.+....++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~ 242 (440)
T PF02133_consen 163 AVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLGF 242 (440)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHHH
T ss_pred HhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeehh
Confidence 44333332222111 12211111111 11111111111344555444433332 2456688899998877677777777
Q ss_pred HHHHHHHHHHHHHHHhH----ccCCccchh--ccCCCchhHHHhHHHHHHHHhhhhhccchhchHHHHHHhhcCCCcccc
Q 044089 387 VFCSLLNAGVGICGYLM----FGDSIQSQF--TLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIALSLEELMPSKELQS 460 (521)
Q Consensus 387 ~i~~~~Y~~vg~~gy~~----fG~~~~~~i--~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~le~~l~~~~~~~ 460 (521)
....+...++++++... .++...... +..+...........+.......+.-....++...++.+..+++. +
T Consensus 243 ~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~~~~--~ 320 (440)
T PF02133_consen 243 PGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNIFPKRI--S 320 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCCSTTT----
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHccceee--c
Confidence 77777777666665543 333322221 222211101111111222222233334556777778888877321 2
Q ss_pred chhhhHHHHHHHHHHHHHHhhccc----HHHHHHHHhHHHHHHHHHHH
Q 044089 461 YSVSVIIRTILAISTLVVALTLPY----FGIVMSLIGSLLAMLITLIF 504 (521)
Q Consensus 461 ~~~~~~~~~~~~~~~~~va~~vp~----~~~vi~l~G~~~~~~i~~il 504 (521)
++++..... ++.....+.....+ +...+++.|.+.....+.++
T Consensus 321 ~~~~~~~~~-~i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i 367 (440)
T PF02133_consen 321 RRRGVIIVG-VIGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMI 367 (440)
T ss_dssp HHHHHHHHH-HHHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHH
T ss_pred chHHHHHHH-HHHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHH
Confidence 222222222 22222222212233 55566677766655544444
No 79
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.19 E-value=0.16 Score=52.86 Aligned_cols=235 Identities=14% Similarity=0.114 Sum_probs=111.0
Q ss_pred CCchHHHHHHHHHhhhhhh-hhHhHHHHH-hhcHHHHHH----HHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhC
Q 044089 162 KCSLAQSCLNGINVLCGVG-LLATPYAIK-EGGWSSLSL----LFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 162 ~~s~~~~v~~li~~iiG~G-ILslP~a~~-~~G~~g~il----ll~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG 235 (521)
-.|-..-++..+++.+|-| |--.||... ++|-.=++. ++..++-....-..++|.. +.....+|..+.. +
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~-~~~~~~a~~~l~~---~ 83 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRG-RKNAVGAFRKLAP---K 83 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhc-CCChhHHHHHhcc---C
Confidence 3466777888999999999 778999865 455322222 2233333333333344432 2334556665554 3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCC--C--------cccc--chhHHHHHHHHHHHhhhcccC
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFG--G--------LHLD--CHKIFSITATLVVLPTVWLRD 303 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~--~--------~~~~--~~~~~~i~~~lii~pl~~l~~ 303 (521)
|++++ +.+..+...+..+.-|.++.+=.+..++......+. + .... .......+...++.-....|.
T Consensus 84 ~~~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~G 162 (439)
T COG0733 84 KKWEW-IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRG 162 (439)
T ss_pred ccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Confidence 43332 233333333344444555554444333322211100 0 0000 001111111111111112233
Q ss_pred cch-hHHHHHHHHHHHHHHHHhhhheec-----cccccc--CCCCcc-cCCCchhHHHHHHhhhcc-cccchhhhhhhcc
Q 044089 304 LTL-LSYISVGGVITTGVVVLCLLWIGL-----VDAVGF--HPYGTA-LDLSNLPVTIGLYGFAYA-GHSVFPNIYSSMQ 373 (521)
Q Consensus 304 l~~-l~~~s~~~~~~~i~~~~~v~~~~~-----~~~~~~--~~~~~~-~~~~~~~~a~~~~~faf~-g~~~~~~i~~emk 373 (521)
.++ +.+.+.+-+...+++.+.+..... .++..+ .++... .+++-+..|+|...|+.+ |...+..-.+.++
T Consensus 163 V~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~ 242 (439)
T COG0733 163 VKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLS 242 (439)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 322 555555444443333333332222 222221 122222 235667789999999884 6666777777788
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 044089 374 EPKKFPFVLMISFVFCSLLNAGVGICGY 401 (521)
Q Consensus 374 ~p~k~~~~~~~a~~i~~~~Y~~vg~~gy 401 (521)
|++++++........-+.+=++.|++-+
T Consensus 243 k~~~l~~sa~~v~~~n~~~s~lAGl~If 270 (439)
T COG0733 243 KKSDLVSSALSIVLLNTLISLLAGLVIF 270 (439)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888877666666666666666555544
No 80
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.09 E-value=0.49 Score=49.41 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=60.5
Q ss_pred CCCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHH---HHHHHHHHHHHHHHHhHhhCCCCCCh----HH
Q 044089 157 LPPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLF---IFGIIAFYTGILLQECLDSAPGLTTY----PD 228 (521)
Q Consensus 157 ~~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl---~~~~l~~~t~~lL~~~~~~~~~~~sY----~~ 228 (521)
+..++++|.+|+.+..+...+|+| |.....|+..+|.-.+..+- +++..+-|+-..|..-.+++.++..| .-
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 344668999999999999999999 88899999888866555544 55556667777777766654444333 23
Q ss_pred HHHHHhCh-hHHHHHHHH
Q 044089 229 VGQAAFGI-TGRLIVAIV 245 (521)
Q Consensus 229 i~~~~fG~-~~~~l~~~~ 245 (521)
+.++.+|. |...+..++
T Consensus 93 yi~~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIF 110 (416)
T ss_pred HHHHHhccchHHHHHHHH
Confidence 34566664 344444444
No 81
>PHA02764 hypothetical protein; Provisional
Probab=97.08 E-value=0.041 Score=54.23 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=63.2
Q ss_pred CCCCCCchHHHHH-HHHHhhhhhhhhHhHHHHH---hhc-HH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHH
Q 044089 158 PPARKCSLAQSCL-NGINVLCGVGLLATPYAIK---EGG-WS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQ 231 (521)
Q Consensus 158 ~~~~~~s~~~~v~-~li~~iiG~GILslP~a~~---~~G-~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~ 231 (521)
..-|+.|.+.+++ |+.+...|.++ +.|+-+. +++ .+ +.++..++++....|+..++..+++.+|.+.|. +
T Consensus 9 GLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYI---S 84 (399)
T PHA02764 9 GIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYI---R 84 (399)
T ss_pred CceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEh---H
Confidence 4467788888888 55555555544 5455222 122 22 555555777788889999999999999999999 8
Q ss_pred HHhChhHHHHHHHHHHHH
Q 044089 232 AAFGITGRLIVAIVLYLE 249 (521)
Q Consensus 232 ~~fG~~~~~l~~~~~~~~ 249 (521)
++||++++++..+..+..
T Consensus 85 RAFGP~~GFLvG~a~WLt 102 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLT 102 (399)
T ss_pred HhhCccHHHHHHHHHHHH
Confidence 999999999988876644
No 82
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.70 E-value=0.41 Score=52.06 Aligned_cols=67 Identities=22% Similarity=0.351 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhhhhhh-hhHhHHH-HHhhcHH----HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHH
Q 044089 164 SLAQSCLNGINVLCGVG-LLATPYA-IKEGGWS----SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQ 231 (521)
Q Consensus 164 s~~~~v~~li~~iiG~G-ILslP~a-~~~~G~~----g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~ 231 (521)
+..+-++..++..+|-| +.-.|+- .+++|.. -++.++++|+=..+.-..+++.. +.+....|.+++-
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~-~~~~~~~~~~~~p 78 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYS-RSGPIGAWKRLCP 78 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTSHHHS-HHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 55677888999999999 8889997 4577644 33344455666666667777764 4555555655543
No 83
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0068 Score=64.27 Aligned_cols=222 Identities=14% Similarity=0.199 Sum_probs=125.5
Q ss_pred CchHHHHHH-HHHhhhhhh-hhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHH---HHHH-hHhhCCCCCChHHHHHHHhC
Q 044089 163 CSLAQSCLN-GINVLCGVG-LLATPYAIKEGGWS-SLSLLFIFGIIAFYTGI---LLQE-CLDSAPGLTTYPDVGQAAFG 235 (521)
Q Consensus 163 ~s~~~~v~~-li~~iiG~G-ILslP~a~~~~G~~-g~illl~~~~l~~~t~~---lL~~-~~~~~~~~~sY~~i~~~~fG 235 (521)
-+|+.+++. .+-.|.|.= .|=+++-+.|+|.. |.+++.+...++..|.. -+++ |.-+.+| .|.-+ .+.+|
T Consensus 30 fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg--~yfli-s~slg 106 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG--VYFLI-SRSLG 106 (643)
T ss_pred EeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc--EEEEE-Eeccc
Confidence 455555432 222233432 34588889999998 88777755555554443 3322 3223444 44433 45667
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHH
Q 044089 236 ITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGV 315 (521)
Q Consensus 236 ~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~ 315 (521)
+..+--+++++.+.+.-.+..|++-+++.+..++..... ...+. +..++.++.+.+ +.-...|...+.+
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~----~~i~g---i~~vt~~ill~i----~~ag~~w~~k~q~ 175 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK----EMIDG---IGSVTVLILLAI----NVAGVEWEAKLQI 175 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH----HHhcc---hhHHHHHHHHHh----hhccchhHHHHHH
Confidence 766667777777777778888999999999999876532 11111 233333333333 3333444444443
Q ss_pred HHHHHHHHhh--hheecccc--------cccC----CCCcccCCC---chhHHHHHHhhhcccccchhhhhhhccCCCC-
Q 044089 316 ITTGVVVLCL--LWIGLVDA--------VGFH----PYGTALDLS---NLPVTIGLYGFAYAGHSVFPNIYSSMQEPKK- 377 (521)
Q Consensus 316 ~~~i~~~~~v--~~~~~~~~--------~~~~----~~~~~~~~~---~~~~a~~~~~faf~g~~~~~~i~~emk~p~k- 377 (521)
+..+++++.+ +..|..-. .++. .+....++. .++..|+++.=+..|.--=.++.+.+|+|++
T Consensus 176 ~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~ 255 (643)
T KOG2083|consen 176 VLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKA 255 (643)
T ss_pred HHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhh
Confidence 3332222221 22221111 0110 111111222 5555666666666666666788999999965
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 044089 378 FPFVLMISFVFCSLLNAGVGI 398 (521)
Q Consensus 378 ~~~~~~~a~~i~~~~Y~~vg~ 398 (521)
.|+....++...+.+|+.+..
T Consensus 256 IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 256 IPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred cccchhhhhhhhhhhhhhhhh
Confidence 999999999999999976543
No 84
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=96.59 E-value=1.2 Score=46.64 Aligned_cols=274 Identities=15% Similarity=0.147 Sum_probs=131.5
Q ss_pred CChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccC
Q 044089 224 TTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRD 303 (521)
Q Consensus 224 ~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~ 303 (521)
++..|.+++.|+++..++..+...+....++++..+..+-.++-++.-. ..+..+++++..+-....++
T Consensus 77 ~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip-----------~~~g~iItav~~~iil~~~~ 145 (416)
T COG1914 77 KGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIP-----------LIIGAVITAVDVLIILLLKG 145 (416)
T ss_pred CcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHHHHHHHhcc
Confidence 5788888999999999988888888888888888888877777765311 23444444444444444443
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhheecccccccC------CCCcccCCCchhHHHHHHhhhcccccchhhhhhhc----c
Q 044089 304 LTLLSYISVGGVITTGVVVLCLLWIGLVDAVGFH------PYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYSSM----Q 373 (521)
Q Consensus 304 l~~l~~~s~~~~~~~i~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~em----k 373 (521)
.+.+-.+... ..+.++++..+......+++. ..+...+......+++++.-.=..|.....-..-. +
T Consensus 146 ~r~~E~~v~~---l~~~~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~ 222 (416)
T COG1914 146 YRLLERVVLI---LGLVLVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIK 222 (416)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceecccccc
Confidence 4444443332 222222222222222222211 00111111223444444332222211111100000 1
Q ss_pred CC---CChhh---HHHHHHHHHHHHHHHHHHHHHhHccCCcc-chhc-------cCCCch----hHHHhHHHHHHHHhhh
Q 044089 374 EP---KKFPF---VLMISFVFCSLLNAGVGICGYLMFGDSIQ-SQFT-------LNFPKE----FVASKVAIWTTVLIPM 435 (521)
Q Consensus 374 ~p---~k~~~---~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~-~~i~-------~n~p~~----~~~~~i~~~~~~i~~~ 435 (521)
++ ++.++ -..+++.+..++.+.+-......|..... .+.. ...|.- .....++.+....+..
T Consensus 223 ~~~~~~~~~~~~~d~~i~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~ 302 (416)
T COG1914 223 GEENLRALRYSRIDTIIGMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSST 302 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHH
Confidence 21 11222 23333334444444444444444432222 1111 111110 0111111111111111
Q ss_pred hhccchhchHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCC
Q 044089 436 SKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKILQG 515 (521)
Q Consensus 436 ~s~pl~~~p~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~ 515 (521)
..-+ +.-....++.++.+ ...+.++...|....+++.++.+++.+...++.+.+.+.+..+-+..+.++++..+|+
T Consensus 303 ~~~~---~a~~~~~~g~~~~~-~~~~~r~~i~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~ 378 (416)
T COG1914 303 VVAT---YAGQIVMEGFLNWR-IPLWRRRLITRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKK 378 (416)
T ss_pred HHHh---hhhHHHHHhhhccc-CchHhhHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 1011 11112334444432 2356677788877777766666666699999999999999998888888888887776
No 85
>PRK00701 manganese transport protein MntH; Reviewed
Probab=96.37 E-value=1.8 Score=46.02 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=53.0
Q ss_pred hhhhhhhHh-----HHHH---HhhcHH-HHHH--HHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHH
Q 044089 176 LCGVGLLAT-----PYAI---KEGGWS-SLSL--LFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAI 244 (521)
Q Consensus 176 iiG~GILsl-----P~a~---~~~G~~-g~il--ll~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~ 244 (521)
.+|.|++.. |..+ .++|-- |.-+ .++.+.+..+....+.-.....+| ++..+++++-|||+..++..+
T Consensus 36 ~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG-~~l~~~ir~~~~~~~~~~~~~ 114 (439)
T PRK00701 36 FLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATG-RDLAQACRDRYPRPVVWFLWI 114 (439)
T ss_pred HcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcC-CCHHHHHHHHCCchHHHHHHH
Confidence 677777665 4443 355644 4333 334444444444333322222333 679999999999988877666
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhc
Q 044089 245 VLYLELFAASIEYLIMMSDNLASLF 269 (521)
Q Consensus 245 ~~~~~~~g~~v~y~i~~~~~l~~l~ 269 (521)
...+...++.+..+.-.+--++.++
T Consensus 115 ~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 115 QAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6555555556666655555555443
No 86
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.37 E-value=0.53 Score=47.92 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=80.3
Q ss_pred CchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHH
Q 044089 163 CSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLI 241 (521)
Q Consensus 163 ~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l 241 (521)
...+-.+.+=..+|-|+|-..=|-.-.+-||+ +++.+++-+++.---.....-.+.-+.+-++..+++++..||+++.+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 44556667778889999988888777899999 88777766666655555554444444455899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhh
Q 044089 242 VAIVLYLELFAASIEYLIMMSDNLAS 267 (521)
Q Consensus 242 ~~~~~~~~~~g~~v~y~i~~~~~l~~ 267 (521)
..+..++.+....+++....++.+..
T Consensus 132 f~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 132 FLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99998888877777777777776544
No 87
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.73 E-value=2.9 Score=43.02 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCc
Q 044089 200 FIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGL 279 (521)
Q Consensus 200 l~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~ 279 (521)
++.+.+..|....+.-.....+| ++..|..++.+||+..++..+...+......+..+...+.-++-++ ...
T Consensus 19 lll~~~~~~~~q~~~~R~~~~Tg-~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~------ 90 (358)
T PF01566_consen 19 LLLSNLLKYVFQEMAARLGIVTG-KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP------ 90 (358)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC-CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC------
Confidence 33344433433333322333333 6788888899999888887777766666666666666666666555 221
Q ss_pred cccchhHHHHHHHHHHHhhhc--ccCcchhHHHHHHH
Q 044089 280 HLDCHKIFSITATLVVLPTVW--LRDLTLLSYISVGG 314 (521)
Q Consensus 280 ~~~~~~~~~i~~~lii~pl~~--l~~l~~l~~~s~~~ 314 (521)
...+.++.+++.+.+.+ .++.+.+..+..+-
T Consensus 91 ----~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~l 123 (358)
T PF01566_consen 91 ----LWIWVLLVAVIAILLLWLSSGGYRRLERILKVL 123 (358)
T ss_pred ----cHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 23344444444443434 45566666555433
No 88
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=95.40 E-value=1 Score=47.13 Aligned_cols=291 Identities=17% Similarity=0.149 Sum_probs=133.6
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhc--HH-HHHHHHHHHHHHHHHHHHHHHhHhhCCC---CCChHHHHH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGG--WS-SLSLLFIFGIIAFYTGILLQECLDSAPG---LTTYPDVGQ 231 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G--~~-g~illl~~~~l~~~t~~lL~~~~~~~~~---~~sY~~i~~ 231 (521)
+.+|+=|+++-+..=+...++++---+..+-.+.| |- +++.+.+.- ....+-..+...+| +-+++-..+
T Consensus 51 ~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~-----~~~~~f~~lns~~G~~yhIsFpv~sR 125 (572)
T KOG2466|consen 51 PSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGY-----LFTAIFLVLNSRPGSDYHISFPVLSR 125 (572)
T ss_pred cccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHH-----HHHHHHHHHccCCCcccccceeeeee
Confidence 33566777777766666666666555555555555 22 433332221 11112222233444 235666667
Q ss_pred HHhChhHHH---HHHHHHHHHHHHHHHHHH--HHHHhHHhhhccccC--CCCCC-ccccch-hHHHHHHHHHHHhhhccc
Q 044089 232 AAFGITGRL---IVAIVLYLELFAASIEYL--IMMSDNLASLFPHTS--MNFGG-LHLDCH-KIFSITATLVVLPTVWLR 302 (521)
Q Consensus 232 ~~fG~~~~~---l~~~~~~~~~~g~~v~y~--i~~~~~l~~l~~~~~--~~~~~-~~~~~~-~~~~i~~~lii~pl~~l~ 302 (521)
..||-++.. +..+++.+..||.-+ |+ .-+.-.|..+++... ++..+ ...... ....++.-++.+|..+++
T Consensus 126 ~sFGiygS~~pIi~R~vma~vwYg~~a-wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~ 204 (572)
T KOG2466|consen 126 SSFGIYGSLWPIINRVVMACVWYGVNA-WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFP 204 (572)
T ss_pred eehhhhHhHHHHHHHHHHHHhhhhhhh-hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeecc
Confidence 777766553 333334333333221 11 111122333443322 11111 111112 222334445566666663
Q ss_pred --CcchhHHHHHHHHHHHHHHHHhhhheecc-cccc--cCCCCcccCCCchhHHHHHHhhhcccc----cchhhhhhhcc
Q 044089 303 --DLTLLSYISVGGVITTGVVVLCLLWIGLV-DAVG--FHPYGTALDLSNLPVTIGLYGFAYAGH----SVFPNIYSSMQ 373 (521)
Q Consensus 303 --~l~~l~~~s~~~~~~~i~~~~~v~~~~~~-~~~~--~~~~~~~~~~~~~~~a~~~~~faf~g~----~~~~~i~~emk 373 (521)
.++.+-..+.+......+ ..++|.... .+.+ .+...+..+....+.-+..+.+++.+. .|.|...+--|
T Consensus 205 p~~ir~lf~~ka~~t~fA~~--g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsRF~k 282 (572)
T KOG2466|consen 205 PYKIRHLFTWKAVLTPFAAF--GFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSRFAK 282 (572)
T ss_pred HHHhhhHHHHHHhhhHHHHH--HHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHhhcC
Confidence 333333333333222222 222222111 1111 222344455555555566666666655 46677777788
Q ss_pred CCCChhh----HHHHHHHHHHHHHHHHHHHHHhHccCCccch--hcc-----CCCchhHH--HhHHHHHHHHhhhhhccc
Q 044089 374 EPKKFPF----VLMISFVFCSLLNAGVGICGYLMFGDSIQSQ--FTL-----NFPKEFVA--SKVAIWTTVLIPMSKYAM 440 (521)
Q Consensus 374 ~p~k~~~----~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~~--i~~-----n~p~~~~~--~~i~~~~~~i~~~~s~pl 440 (521)
+|.+... ++.+.+.+.+++=++++.+++..||...-.+ ++. |+..+..+ ..++....+-++-+...-
T Consensus 283 sp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~RAgvFfi~~~f~laql~~NISa 362 (572)
T KOG2466|consen 283 SPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGARAGVFFIGFGFALAQLGTNISA 362 (572)
T ss_pred CCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhccccccccchhhhHHHHHHHHHHHhcchhc
Confidence 8866443 3445555555555566677888999765542 222 23322211 112222222233333344
Q ss_pred hhchHHHHHHhhcCCC
Q 044089 441 TLTPIALSLEELMPSK 456 (521)
Q Consensus 441 ~~~p~~~~le~~l~~~ 456 (521)
-..++..-+-.++|+-
T Consensus 363 n~vaagnDl~~L~Pky 378 (572)
T KOG2466|consen 363 NSVAAGNDLSALLPKY 378 (572)
T ss_pred cccccchhhHhhCcce
Confidence 4455666667777775
No 89
>PRK15015 carbon starvation protein A; Provisional
Probab=95.36 E-value=0.36 Score=52.49 Aligned_cols=98 Identities=11% Similarity=0.136 Sum_probs=71.9
Q ss_pred HHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHHHH
Q 044089 168 SCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVL 246 (521)
Q Consensus 168 ~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~~~ 246 (521)
.+-+=..+|-|+|-+.=|.--.+-||+ +++.+++.+++.-.-..+..-....+.+-++..+++++-.|++++.+..+..
T Consensus 88 LfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lfli~i 167 (701)
T PRK15015 88 LFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVAC 167 (701)
T ss_pred hhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHHHHHH
Confidence 344566778899999999887799999 8877776655555444444443333444479999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 044089 247 YLELFAASIEYLIMMSDNL 265 (521)
Q Consensus 247 ~~~~~g~~v~y~i~~~~~l 265 (521)
++.+.....++..++...+
T Consensus 168 ~~iliiviAvfalvvv~al 186 (701)
T PRK15015 168 FMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7776666666666666655
No 90
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.19 E-value=0.64 Score=48.80 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=58.7
Q ss_pred CCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcc
Q 044089 222 GLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWL 301 (521)
Q Consensus 222 ~~~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l 301 (521)
+..-...++++.||+.|..+..++..+.|+.+++.-....+++++.+++... ...+.++.+++-+.++.+
T Consensus 259 g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kis----------Y~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 259 GAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKIS----------YKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----------hHHHHHHHHHHHHHHHHh
Confidence 3445667889999999999999999999999999999999999999987432 445555555555555444
Q ss_pred cCcchhHHHH
Q 044089 302 RDLTLLSYIS 311 (521)
Q Consensus 302 ~~l~~l~~~s 311 (521)
.++.+-.++
T Consensus 329 -Gl~~Ii~~s 337 (427)
T PF05525_consen 329 -GLDQIIKIS 337 (427)
T ss_pred -CHHHHHHHH
Confidence 444444444
No 91
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.79 E-value=0.59 Score=48.47 Aligned_cols=51 Identities=18% Similarity=0.377 Sum_probs=45.6
Q ss_pred CCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccc
Q 044089 221 PGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPH 271 (521)
Q Consensus 221 ~~~~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~ 271 (521)
++..-..+++++.||+.|..+..+...+.|+++++..+...+++++.+.+.
T Consensus 252 ~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k 302 (378)
T TIGR00796 252 NGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK 302 (378)
T ss_pred CcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345567788999999999999999999999999999999999999998764
No 92
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.76 E-value=1.4 Score=47.03 Aligned_cols=103 Identities=13% Similarity=0.168 Sum_probs=73.5
Q ss_pred chHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHH
Q 044089 164 SLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIV 242 (521)
Q Consensus 164 s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~ 242 (521)
+.+..+-+=.-+|-|+|-+.=|---++-||+ |.+-+++-+++.---...+.-....+.+-++..+++++-+|+..+.+.
T Consensus 53 nk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~~ 132 (575)
T COG1966 53 NKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVFF 132 (575)
T ss_pred CchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHHH
Confidence 3344555566678899999999988999998 877777666665555555555444344558999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHh
Q 044089 243 AIVLYLELFAASIEYLIMMSDNLA 266 (521)
Q Consensus 243 ~~~~~~~~~g~~v~y~i~~~~~l~ 266 (521)
.+...+.+....+++.......+.
T Consensus 133 ~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 133 LLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887766665555555555555443
No 93
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=94.25 E-value=8.1 Score=40.33 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHhhcCCCccccchhhhHHHHHHHHHHHHHHhhc--ccHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 044089 449 LEELMPSKELQSYSVSVIIRTILAISTLVVALTL--PYFGIVMSLIGSLLAMLITLIFPCVFYLK 511 (521)
Q Consensus 449 le~~l~~~~~~~~~~~~~~~~~~~~~~~~va~~v--p~~~~vi~l~G~~~~~~i~~ilP~l~~l~ 511 (521)
.++.+..+. .++.++...|.+.++++.+++... .....++.+...+.+..+=+++=+++++-
T Consensus 321 ~~gfl~~~~-~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~l~LP~~~i~Ll~~~ 384 (390)
T TIGR01197 321 MEGFLNWRW-SPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLSLLLPFALIPLIMFT 384 (390)
T ss_pred HHHHcCCCC-cHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456655432 345556666666666666666653 45677777777776655545444444443
No 94
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=93.82 E-value=10 Score=39.85 Aligned_cols=318 Identities=16% Similarity=0.141 Sum_probs=155.1
Q ss_pred CCCCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHHHHHHHH---HHHHHHHHHHHHHHHhHhhCCCCCChH----HH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWSSLSLLF---IFGIIAFYTGILLQECLDSAPGLTTYP----DV 229 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~g~illl---~~~~l~~~t~~lL~~~~~~~~~~~sY~----~i 229 (521)
+.++..|.+|+.+..+.+-+|+| |-....|++-+|.-.+..+= ++|..+.|.--.|.+-.+++..+..|. -+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 45778999999999999999999 77899999888865444332 666777777778887766444333332 22
Q ss_pred HHHHhC-hhHHHHHHHHHHHHHH-HHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchh
Q 044089 230 GQAAFG-ITGRLIVAIVLYLELF-AASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLL 307 (521)
Q Consensus 230 ~~~~fG-~~~~~l~~~~~~~~~~-g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l 307 (521)
.++.+| ||...++.+.+.+.+. .....-.-.+++.++.-+.. + ..+..++.+++. -+..+..++.+
T Consensus 138 i~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~---~--------~~~~gi~la~l~-~~VI~GGi~rI 205 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGI---P--------PLVTGIVLALLV-ALVIFGGIKRI 205 (452)
T ss_pred HHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCC---c--------HHHHHHHHHHHH-HHHHHcchHHH
Confidence 344444 4444555533332222 13333334444444444321 1 223333333322 23344577777
Q ss_pred HHHHHHHHHHHH--HHHHhhhhee--ccccc---------ccCCCCcccCCC------chhHHHHHHhhhc-ccccchhh
Q 044089 308 SYISVGGVITTG--VVVLCLLWIG--LVDAV---------GFHPYGTALDLS------NLPVTIGLYGFAY-AGHSVFPN 367 (521)
Q Consensus 308 ~~~s~~~~~~~i--~~~~~v~~~~--~~~~~---------~~~~~~~~~~~~------~~~~a~~~~~faf-~g~~~~~~ 367 (521)
..++-.-+.++. +++.+++... ...-+ .+.......+.. -+...+.-.+||= .|....|.
T Consensus 206 a~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~ 285 (452)
T COG1115 206 AKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPI 285 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchh
Confidence 777654444432 2222222111 11111 111222222222 2334455566776 56777787
Q ss_pred hhhhcc--CCCC-----hhhHHHHHHHHHHHHHHHHHHHHHhHccCCccc-h-----hccCCCch-hHHHhHHHHHHHHh
Q 044089 368 IYSSMQ--EPKK-----FPFVLMISFVFCSLLNAGVGICGYLMFGDSIQS-Q-----FTLNFPKE-FVASKVAIWTTVLI 433 (521)
Q Consensus 368 i~~emk--~p~k-----~~~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~-~-----i~~n~p~~-~~~~~i~~~~~~i~ 433 (521)
.+..-+ ||.| +-.+..=.+++|++-=+.+=+.|-+..++...+ . +...++.. .....++..+.
T Consensus 286 aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lF--- 362 (452)
T COG1115 286 AAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLF--- 362 (452)
T ss_pred HHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHH---
Confidence 776654 6743 112222244455544444444444444432111 1 22233321 11112222222
Q ss_pred hhhhccchhchHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHHhh-cccHHHHHHHHhHH
Q 044089 434 PMSKYAMTLTPIALSLEELMPSKELQSYSVSVIIRTILAISTLVVALT-LPYFGIVMSLIGSL 495 (521)
Q Consensus 434 ~~~s~pl~~~p~~~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~va~~-vp~~~~vi~l~G~~ 495 (521)
.+++.---.+-...+++-+. + ++....+.|.+.+....+-+.. .+.++.+.++..++
T Consensus 363 afTTIlg~yyyge~~~~fl~-~----~k~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~~gl 420 (452)
T COG1115 363 AFTTILGWYYYGEKNIEFLF-G----SKKAILLYRLIVLAMVFLGAVLSLDLVWNLADLFMGL 420 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHh-C----CchHHHHHHHHHHHHHHHhccccHHHHHHHHHHhchH
Confidence 22333222333344444444 2 2255567777777766666654 24566666665554
No 95
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.08 E-value=2.2 Score=44.15 Aligned_cols=129 Identities=20% Similarity=0.299 Sum_probs=77.7
Q ss_pred HHHhhhhhhhhHhHHHHH---hhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHHHHH
Q 044089 172 GINVLCGVGLLATPYAIK---EGGWS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLY 247 (521)
Q Consensus 172 li~~iiG~GILslP~a~~---~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~~~~ 247 (521)
++|++=.-|+-.-..-++ .+|++ ++.+-++...+.+....--.......+|.+-...+.++.||+.|.++...+..
T Consensus 207 Iv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~ 286 (431)
T COG1114 207 IVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVF 286 (431)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 344444445444433333 45666 55554444444443311111111123344566778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHH
Q 044089 248 LELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYIS 311 (521)
Q Consensus 248 ~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s 311 (521)
+.|+.+++.-+..++|+.++++|... ...|.++..++.+....+ .++.+-..+
T Consensus 287 lACLTTaiGLi~a~aefF~~~~p~~S----------Y~~~v~if~i~sflvan~-GL~~Ii~is 339 (431)
T COG1114 287 LACLTTAVGLIVACAEFFSKLVPKLS----------YKTWVIIFTLISFLVANL-GLEQIIKIS 339 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc----------HHHHHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 99999999999999999999998543 344544544444444333 444444444
No 96
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=93.01 E-value=14 Score=39.07 Aligned_cols=173 Identities=14% Similarity=0.118 Sum_probs=98.4
Q ss_pred hCCCCCChHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHh
Q 044089 219 SAPGLTTYPDVGQAAF-GITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLP 297 (521)
Q Consensus 219 ~~~~~~sY~~i~~~~f-G~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~p 297 (521)
|+-|.+|.+|....=+ -++.|++..+...+.-+...+..+.-.+..+..+++-. ...-.++..++++.
T Consensus 99 Rk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~-----------~~vgv~ig~ilm~~ 167 (529)
T COG4147 99 RKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP-----------YHVGVVIGGILMMV 167 (529)
T ss_pred HhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC-----------ceeehhhHhHHHHH
Confidence 4667799998765544 45677776666555555566777777788777777521 11223334444445
Q ss_pred hhcccCcchhHHHHHHHHHHHH----HHHHhhhheeccccc-------ccC-------CCCcccCCCchhHHHHHHhhhc
Q 044089 298 TVWLRDLTLLSYISVGGVITTG----VVVLCLLWIGLVDAV-------GFH-------PYGTALDLSNLPVTIGLYGFAY 359 (521)
Q Consensus 298 l~~l~~l~~l~~~s~~~~~~~i----~~~~~v~~~~~~~~~-------~~~-------~~~~~~~~~~~~~a~~~~~faf 359 (521)
.+.+-.++...|.+++.-+..+ +..+.+.+....+.. ..+ ...+....++....++...--.
T Consensus 168 Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm 247 (529)
T COG4147 168 YVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALM 247 (529)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHH
Confidence 5556688888888866543322 222233322111100 001 0011111234444444443333
Q ss_pred ccccchhhhhhhccC-C--CChhhHHHHHHHHHHHHHHHHHHHHHh
Q 044089 360 AGHSVFPNIYSSMQE-P--KKFPFVLMISFVFCSLLNAGVGICGYL 402 (521)
Q Consensus 360 ~g~~~~~~i~~emk~-p--~k~~~~~~~a~~i~~~~Y~~vg~~gy~ 402 (521)
.|..-+|.+.-.--. | |.-++.+.++..+...+|+..-+.|+.
T Consensus 248 ~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 248 VGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred HccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666766544432 3 457899999999999999999888875
No 97
>PRK09928 choline transport protein BetT; Provisional
Probab=92.47 E-value=21 Score=39.79 Aligned_cols=24 Identities=17% Similarity=0.048 Sum_probs=18.8
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhH
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLA 183 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILs 183 (521)
+++-|.++-+..+..+-+|+|++.
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhhee
Confidence 456677777788899999999864
No 98
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=92.44 E-value=19 Score=39.15 Aligned_cols=86 Identities=22% Similarity=0.362 Sum_probs=57.6
Q ss_pred chHHHHHHHHHhhhhhh-hhHhHHH-HHhhcH---H-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChh
Q 044089 164 SLAQSCLNGINVLCGVG-LLATPYA-IKEGGW---S-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGIT 237 (521)
Q Consensus 164 s~~~~v~~li~~iiG~G-ILslP~a-~~~~G~---~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~ 237 (521)
+-++..+.+++..++.| +=-.||- ++++|+ + -.+++++.|+=-+|--..|++-+ +.+....+..++=+.-| .
T Consensus 83 ~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~-r~g~~gvw~ri~P~l~G-i 160 (629)
T KOG3659|consen 83 SKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYH-RQGCIGVWRRIAPALKG-I 160 (629)
T ss_pred hHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHh-cccchhHHHHhCHHhcC-C
Confidence 44677888888888888 5568986 677775 3 66777788888888888888865 56666677766654433 4
Q ss_pred HHHHHHHHHHHHHH
Q 044089 238 GRLIVAIVLYLELF 251 (521)
Q Consensus 238 ~~~l~~~~~~~~~~ 251 (521)
|.-++.+.++...|
T Consensus 161 gy~i~~i~~~~~~y 174 (629)
T KOG3659|consen 161 GYAICLIAFFVGLY 174 (629)
T ss_pred chhhhHHHHHHHHH
Confidence 44444444444433
No 99
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=91.35 E-value=24 Score=39.11 Aligned_cols=63 Identities=27% Similarity=0.454 Sum_probs=42.6
Q ss_pred chHHHHHHHHHhhhhhh-hhHhHHH-HHhhcH---H-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChH
Q 044089 164 SLAQSCLNGINVLCGVG-LLATPYA-IKEGGW---S-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYP 227 (521)
Q Consensus 164 s~~~~v~~li~~iiG~G-ILslP~a-~~~~G~---~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~ 227 (521)
+..+-++..++..+|-| +.=.|+. .+++|- + =+++++++|+=..+--..+++-. +.+....+.
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~-~~g~v~~wr 107 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFT-SQGPVSVWR 107 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhh-cCChHHHHH
Confidence 77888999999999999 6669987 567772 3 45555566666666666666643 344434443
No 100
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=90.64 E-value=2.5 Score=44.47 Aligned_cols=106 Identities=15% Similarity=0.183 Sum_probs=67.8
Q ss_pred hhcHH-HHHHHHHHHHHHHHHHHHHHHhHh-hCCCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 044089 190 EGGWS-SLSLLFIFGIIAFYTGILLQECLD-SAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLAS 267 (521)
Q Consensus 190 ~~G~~-g~illl~~~~l~~~t~~lL~~~~~-~~~~~~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~ 267 (521)
.+|.+ ++.+.++.+.+++.....-.. .+ ..++..-...+..+.+|+++.++..+++.+.|+.+++..+...++.+++
T Consensus 230 ~ag~ia~~~L~~vY~gL~~lGa~s~~~-~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 230 WAGLMAGVGLTLLYLALFRLGSDSASL-VDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccc-ccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555 444444444444443321111 11 1123334456688899999999999999999999999999999999998
Q ss_pred hccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhH
Q 044089 268 LFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLS 308 (521)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~ 308 (521)
.++ . +...+.++..++.++++.+ .++.+-
T Consensus 309 ~~~-i----------sY~~~v~i~~l~S~~lSn~-G~~~II 337 (439)
T PRK15433 309 YVP-L----------SYRTLVFILGGFSMVVSNL-GLSQLI 337 (439)
T ss_pred hcC-C----------cHHHHHHHHHHHHHHHHHh-HHHHHH
Confidence 875 1 1455666666666666554 333333
No 101
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=88.44 E-value=2.6 Score=45.80 Aligned_cols=229 Identities=14% Similarity=0.034 Sum_probs=121.4
Q ss_pred CCCCchHHHHHHHHHhhhhhh-hhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhH---hhCCCCCChHHHHHHHh
Q 044089 160 ARKCSLAQSCLNGINVLCGVG-LLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECL---DSAPGLTTYPDVGQAAF 234 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~G-ILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~---~~~~~~~sY~~i~~~~f 234 (521)
.|+.-++-..+.++.+-+|++ ++++|......|.- ....+..+. ...+++... ....+..+-.|..++-|
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~-----~~~~~~~~f~Pvf~~~~v~~~~eYl~~Rf 118 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALL-----SVLLLGWIFIPVFYRLGVTTMYEYLEKRF 118 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHH-----HHHhhheEEEEEEEecCeeehhHHHHHHh
Confidence 556677777777777777776 78888776666643 222211111 111111110 12345556666678888
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHH
Q 044089 235 GITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGG 314 (521)
Q Consensus 235 G~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~ 314 (521)
|+..|.+..+.+.+..+....+++..-+-.+.+..+ ... + +..++..+++...+..-.++.+-|.=.+.
T Consensus 119 ~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------~~~--~-l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q 187 (585)
T KOG2349|consen 119 GGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------INL--Y-LIVVILGLICVFYTALGGLKAVIWTDVVQ 187 (585)
T ss_pred cccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------cCc--e-eehHHHHHHHHHHHHhcCeeEEEEhhHHH
Confidence 888777666665544433332222222222222221 111 1 11122222233333444666777777777
Q ss_pred HHHHHHHHHhhhheecccccc-------------------cCCCC--cccCCCchhHHHHHHhhhcccccchhhhhhhcc
Q 044089 315 VITTGVVVLCLLWIGLVDAVG-------------------FHPYG--TALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQ 373 (521)
Q Consensus 315 ~~~~i~~~~~v~~~~~~~~~~-------------------~~~~~--~~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk 373 (521)
.+.++..++.++..+..+..+ +...+ ...-|.-+......-...|..+++...=+-.+|
T Consensus 188 ~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~ 267 (585)
T KOG2349|consen 188 TVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLP 267 (585)
T ss_pred HHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccc
Confidence 777776666666555432111 11111 112233222333444456677777777777777
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHhHc
Q 044089 374 EPKKFPFVLMISFVFCSLLNAGVGICGYLMF 404 (521)
Q Consensus 374 ~p~k~~~~~~~a~~i~~~~Y~~vg~~gy~~f 404 (521)
+-++.++++........++..+..+.|.++|
T Consensus 268 slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 268 SLKHAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred cHHHhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 7788888888888877777777776666655
No 102
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=86.37 E-value=14 Score=39.74 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhHh-------hCCCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 044089 195 SLSLLFIFGIIAFYTGILL-QECLD-------SAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLA 266 (521)
Q Consensus 195 g~illl~~~~l~~~t~~lL-~~~~~-------~~~~~~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~ 266 (521)
|++.-+..+.+..++..+. .-|+. +.....-..++-+.+.||++.+.+..+.++..+.++++-++..+..+.
T Consensus 288 gIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~ 367 (550)
T KOG1289|consen 288 GIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVY 367 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHh
Confidence 5555555554444444332 22222 223234567777889999999888888888999999999998888888
Q ss_pred hhccccCCC
Q 044089 267 SLFPHTSMN 275 (521)
Q Consensus 267 ~l~~~~~~~ 275 (521)
.+-.+-..|
T Consensus 368 afaRDg~LP 376 (550)
T KOG1289|consen 368 AFARDGGLP 376 (550)
T ss_pred hhhccCCCC
Confidence 776654433
No 103
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=85.17 E-value=59 Score=35.00 Aligned_cols=28 Identities=11% Similarity=-0.117 Sum_probs=20.5
Q ss_pred CCCCCCchHHHHHHHHHhhhhhhhhHhH
Q 044089 158 PPARKCSLAQSCLNGINVLCGVGLLATP 185 (521)
Q Consensus 158 ~~~~~~s~~~~v~~li~~iiG~GILslP 185 (521)
+.+++-|.++-+..+..+-+|+|++.-.
T Consensus 70 d~kPefS~~sW~aMlf~aGig~Givfwg 97 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFWG 97 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcch
Confidence 4466788888899999999999987543
No 104
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=81.63 E-value=75 Score=33.56 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhhhhhhhHhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHH
Q 044089 165 LAQSCLNGINVLCGVGLLATPYAI-KEGG--WS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRL 240 (521)
Q Consensus 165 ~~~~v~~li~~iiG~GILslP~a~-~~~G--~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~ 240 (521)
....-+.+..-..|+|=|..|-.. +++| |. +.+.+++.++.--.-+.+-. .+.++ ++.+++++. ||+...
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~---~~~~~--~~~~l~~~v-~~~f~~ 78 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV---AKSGG--GIEDLASRV-GPKFAL 78 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---hhcCC--CHHHHhccc-CcHHHH
Confidence 344556777788999988888776 3555 55 77766666655444443222 12332 788777644 344333
Q ss_pred HHHHH
Q 044089 241 IVAIV 245 (521)
Q Consensus 241 l~~~~ 245 (521)
+...+
T Consensus 79 if~~~ 83 (427)
T PF05525_consen 79 IFTIL 83 (427)
T ss_pred HHHHH
Confidence 33333
No 105
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=73.39 E-value=1.3e+02 Score=31.94 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=47.5
Q ss_pred ccccchhhhHHHHHHHHHHHHHHhhcc--cHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCC
Q 044089 457 ELQSYSVSVIIRTILAISTLVVALTLP--YFGIVMSLIGSLLAMLITLIFPCVFYLKILQGK 516 (521)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~va~~vp--~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~ 516 (521)
+..++.++...|.+.+++++++++... +++.+.++.-.+.+..+=|..-+++++.-.|+.
T Consensus 352 ~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~I 413 (503)
T KOG1291|consen 352 KLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKI 413 (503)
T ss_pred cchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHH
Confidence 445677889999999999999999875 789999998888887777776667776654443
No 106
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=70.91 E-value=1.5e+02 Score=31.62 Aligned_cols=47 Identities=13% Similarity=0.200 Sum_probs=33.1
Q ss_pred ChHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccc
Q 044089 225 TYPDVGQAAFGI-TGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPH 271 (521)
Q Consensus 225 sY~~i~~~~fG~-~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~ 271 (521)
.+.++.+.++|. .+..++.....+..+++..+++...+..+..+-.+
T Consensus 290 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 290 PIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777887 66666666666777777777877777777665443
No 107
>PRK09950 putative transporter; Provisional
Probab=70.66 E-value=1.6e+02 Score=31.86 Aligned_cols=163 Identities=14% Similarity=0.038 Sum_probs=75.4
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHhHH----H-HH------hhcHH-----HHHHHHHHHHHHHHHH-----HHHHH-hH
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLATPY----A-IK------EGGWS-----SLSLLFIFGIIAFYTG-----ILLQE-CL 217 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILslP~----a-~~------~~G~~-----g~illl~~~~l~~~t~-----~lL~~-~~ 217 (521)
+++-|.++-+..+..+-+|+|++.--- . +. +.|.. +.....+=..+..++. ..++. ..
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 566777788888999999999875322 1 11 11221 1111121112222222 22222 22
Q ss_pred hhCCCCCChHHHHHHHhChh----HHHHHHHHHHHHHHHHHHHHHHH----HHhHHhhhccccCCCCCCccccchhHHHH
Q 044089 218 DSAPGLTTYPDVGQAAFGIT----GRLIVAIVLYLELFAASIEYLIM----MSDNLASLFPHTSMNFGGLHLDCHKIFSI 289 (521)
Q Consensus 218 ~~~~~~~sY~~i~~~~fG~~----~~~l~~~~~~~~~~g~~v~y~i~----~~~~l~~l~~~~~~~~~~~~~~~~~~~~i 289 (521)
-++....+.....+-.+|++ .+.+++++.++...+..+.-+-+ ++.-++.++.... + . ......+
T Consensus 161 ~rk~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~----~--~-~~~~~ii 233 (506)
T PRK09950 161 VRKNKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPN----N--F-TVQAFVI 233 (506)
T ss_pred hhcCCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCC----c--h-HHHHHHH
Confidence 23444456777777777753 34466666444433333333333 3334444442110 0 0 1122222
Q ss_pred HHHHHHHhhhcccCc-chhHHHHHHHHHHHHHHHHhhhhee
Q 044089 290 TATLVVLPTVWLRDL-TLLSYISVGGVITTGVVVLCLLWIG 329 (521)
Q Consensus 290 ~~~lii~pl~~l~~l-~~l~~~s~~~~~~~i~~~~~v~~~~ 329 (521)
+...++..++....+ +.++++|.+.+...+.+++.++..|
T Consensus 234 ~vi~~if~~S~~~Gl~kGIk~LS~~N~~la~~ll~~vli~G 274 (506)
T PRK09950 234 LLSGVIFCLSSYIGIDNGLQRLSKMVGWGAFLFALLVLIVG 274 (506)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeecc
Confidence 223333333444455 5677777666666555555555443
No 108
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=69.40 E-value=1.6e+02 Score=31.37 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=17.2
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhH
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLA 183 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILs 183 (521)
+++-|.++-+..+..+-+|+|++.
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllf 57 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMF 57 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhh
Confidence 445666667778888888888764
No 109
>PLN03223 Polycystin cation channel protein; Provisional
Probab=65.86 E-value=2e+02 Score=34.73 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=13.1
Q ss_pred cCCCchhHHHHHHhhhccccc
Q 044089 343 LDLSNLPVTIGLYGFAYAGHS 363 (521)
Q Consensus 343 ~~~~~~~~a~~~~~faf~g~~ 363 (521)
..++++..++........|..
T Consensus 1357 e~FSTf~sSL~TLFqMLLGDf 1377 (1634)
T PLN03223 1357 VHFSDMTDSINSLFENLLGDI 1377 (1634)
T ss_pred hhhcCHHHHHHHHHHHHHcCc
Confidence 366777777766665555543
No 110
>PLN02680 carbon-monoxide oxygenase
Probab=64.32 E-value=81 Score=30.28 Aligned_cols=97 Identities=12% Similarity=0.209 Sum_probs=53.8
Q ss_pred ccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHhHccCCccchhccCCCchhH
Q 044089 342 ALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFV 421 (521)
Q Consensus 342 ~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~ 421 (521)
.++|-.+...+|.+. ..|...+. ++..+.+|+.+|.+=..+-...++...+|+.....+.++. ++...++....
T Consensus 46 ~Fn~HPlLM~~Gfi~--l~geAIL~--yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSW 119 (232)
T PLN02680 46 IFNVHPVLMVIGLVL--LNGEAMLA--YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSW 119 (232)
T ss_pred eEechHHHHHHHHHH--HHHHHHhc--cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHH
Confidence 567776766666554 22333332 3334445666677777777777777788886655555443 33333344444
Q ss_pred HHhHHHHHHHHhhhhhccchhch
Q 044089 422 ASKVAIWTTVLIPMSKYAMTLTP 444 (521)
Q Consensus 422 ~~~i~~~~~~i~~~~s~pl~~~p 444 (521)
......++..++.+..+....+|
T Consensus 120 lGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 120 LGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 44444455555555555555555
No 111
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=55.06 E-value=1.3e+02 Score=25.44 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=40.4
Q ss_pred CCCCCCCCchHHHHHHHHHhhhhhhhhHhHHHHHhhcHH-HHHH-HHHHHHHHHHHHHHHHHhHhhCCC
Q 044089 156 SLPPARKCSLAQSCLNGINVLCGVGLLATPYAIKEGGWS-SLSL-LFIFGIIAFYTGILLQECLDSAPG 222 (521)
Q Consensus 156 ~~~~~~~~s~~~~v~~li~~iiG~GILslP~a~~~~G~~-g~il-ll~~~~l~~~t~~lL~~~~~~~~~ 222 (521)
+...-|..|.-+......-+....-++++|.++..++|+ .... ++.+.+.-.++...|.+..+.+|.
T Consensus 11 ePvV~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe 79 (111)
T TIGR03750 11 EPVVFRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPE 79 (111)
T ss_pred CCceecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCc
Confidence 334466677766554444443333467788877666887 5444 444555566777778877655555
No 112
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=54.61 E-value=2e+02 Score=30.79 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=57.1
Q ss_pred ChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccCCCC----CCccccchhHHHHHHHHHHHhhhc
Q 044089 225 TYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPHTSMNF----GGLHLDCHKIFSITATLVVLPTVW 300 (521)
Q Consensus 225 sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~~~~~~----~~~~~~~~~~~~i~~~lii~pl~~ 300 (521)
--.+.+++.+|.+. +++-+...+.++|..-+.+...+..+......-+.+. .......+..-.++.+++.+.+.+
T Consensus 274 Vav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~ 352 (479)
T KOG1287|consen 274 VAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSL 352 (479)
T ss_pred HHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHH
Confidence 44567899999988 8888888888888777666666666655443332211 111111233334444555555555
Q ss_pred ccCcc-hhHHHHHHHHHHHHHHHHhhhhe
Q 044089 301 LRDLT-LLSYISVGGVITTGVVVLCLLWI 328 (521)
Q Consensus 301 l~~l~-~l~~~s~~~~~~~i~~~~~v~~~ 328 (521)
+.|.. -+.+++...-....+.++.+++.
T Consensus 353 ~~d~~~LIny~sf~~~l~~~l~~~gll~l 381 (479)
T KOG1287|consen 353 IGDFDQLINYVSFAYWLFRGLSMAGLLWL 381 (479)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 34555555544444444444444
No 113
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=52.97 E-value=9.7 Score=41.90 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=6.0
Q ss_pred HHHHHhhhhhhhh
Q 044089 170 LNGINVLCGVGLL 182 (521)
Q Consensus 170 ~~li~~iiG~GIL 182 (521)
+|+...+-|..-|
T Consensus 333 aNi~~I~~~i~~L 345 (822)
T KOG2141|consen 333 ANIIKIIAGIAEL 345 (822)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 114
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=52.00 E-value=1.4e+02 Score=27.40 Aligned_cols=109 Identities=9% Similarity=0.099 Sum_probs=53.7
Q ss_pred cccccCCCCcccCCCchhHHHHHHhhhcccccchhhh-hhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHhHccCCccc
Q 044089 332 DAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNI-YSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLMFGDSIQS 410 (521)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i-~~emk~p~k~~~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~ 410 (521)
++..++.+...++|-.+...++.+.. .|...+-.- ...-+.+++..|.+=..+-...++...+|+...+.+.+..
T Consensus 24 gG~~w~~~~~~Fn~HP~lMv~Gfi~L--~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~-- 99 (179)
T cd08762 24 GGFAWDGSSKNFNWHPVLMVTGMVVL--YGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH-- 99 (179)
T ss_pred CccCCCCCCCceeehHHHHHHHHHHH--HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--
Confidence 44455544446777666655554433 222222111 1111234556677777777778888888887777776553
Q ss_pred hhccCCCchhHHHhHHHHHHHHhhhhhccchhch
Q 044089 411 QFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTP 444 (521)
Q Consensus 411 ~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p 444 (521)
.+...++-.............++-+..+....+|
T Consensus 100 ~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 100 HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2332333333333333333344444444333333
No 115
>PLN00151 potassium transporter; Provisional
Probab=48.81 E-value=4.7e+02 Score=30.09 Aligned_cols=35 Identities=17% Similarity=0.112 Sum_probs=21.8
Q ss_pred ccchhhhHHHHHHHHHHHHHHhhcccHHHHHHHHh
Q 044089 459 QSYSVSVIIRTILAISTLVVALTLPYFGIVMSLIG 493 (521)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~va~~vp~~~~vi~l~G 493 (521)
..+..-..+.-++.+.++++.+.+-+-..+-+--|
T Consensus 466 ~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYG 500 (852)
T PLN00151 466 MGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYG 500 (852)
T ss_pred CCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhh
Confidence 44555556666666777777666666666655555
No 116
>TIGR00909 2A0306 amino acid transporter.
Probab=48.60 E-value=3.4e+02 Score=28.30 Aligned_cols=47 Identities=15% Similarity=0.023 Sum_probs=37.5
Q ss_pred ChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccc
Q 044089 225 TYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFPH 271 (521)
Q Consensus 225 sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~~ 271 (521)
...++.++..|+++..++.+...+..+++..+.+...+..+..+..+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567777888988888888888888888888888888888766543
No 117
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=44.15 E-value=1.5e+02 Score=30.28 Aligned_cols=129 Identities=18% Similarity=0.207 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHccCCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhchHHH-HH-----Hh
Q 044089 378 FPFVLMISFVFCSLLNAGVGICGYLMFGDSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTPIAL-SL-----EE 451 (521)
Q Consensus 378 ~~~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~-~l-----e~ 451 (521)
-++++..++..+...-+++..+||.........++...+..... ..+....++ ..++. .. +.
T Consensus 46 T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l~~~l~--~~a~~~~~~----------~~~~~l~rp~Gl~~~ 113 (340)
T PF12794_consen 46 TPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVALGAALL--AMALFWLVF----------EFFRRLLRPNGLAER 113 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHH--HHHHHHHHH----------HHHHHHHCCCCeEec
Confidence 67999999999999999999999988765555444433321111 111111111 01111 11 12
Q ss_pred hcCCC-ccccchhhhHHHHHHHHHHHHHHhhc---ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 044089 452 LMPSK-ELQSYSVSVIIRTILAISTLVVALTL---PYFGIVMSLIGSLLAMLITLIFPCVFYLKILQGKISK 519 (521)
Q Consensus 452 ~l~~~-~~~~~~~~~~~~~~~~~~~~~va~~v---p~~~~vi~l~G~~~~~~i~~ilP~l~~l~~~~~~~~r 519 (521)
++.-. +.....++..-+...++++.++...+ -+-...-+.+|=+ ..+++.+.-++++.++.++..+.
T Consensus 114 HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl-~~ii~~~~l~~~~~~l~~~~~~~ 184 (340)
T PF12794_consen 114 HFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRL-AFIILLLLLAVFLWRLLRPGWGL 184 (340)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHH-HHHHHHHHHHHHHHHHHcccccc
Confidence 22211 11223334444444433333333222 2445666666655 34566666677777877776654
No 118
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=43.79 E-value=2.4e+02 Score=25.19 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=20.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH
Q 044089 376 KKFPFVLMISFVFCSLLNAGVGICGY 401 (521)
Q Consensus 376 ~k~~~~~~~a~~i~~~~Y~~vg~~gy 401 (521)
+|+.+-+.........+|+++++..|
T Consensus 1 ~r~~~~i~~~~l~~~~~fl~~al~sy 26 (171)
T PF13491_consen 1 ERRKREILGIALLLLALFLLLALISY 26 (171)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45667777777888888888888888
No 119
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=42.72 E-value=3.2e+02 Score=28.76 Aligned_cols=152 Identities=18% Similarity=0.214 Sum_probs=80.0
Q ss_pred cccCcchhHHHHHHHHHHHHHHHHhhhhe-----e-cccccccCCCCcccCCCchhHHHHHHhhhcccccchhhhhh-hc
Q 044089 300 WLRDLTLLSYISVGGVITTGVVVLCLLWI-----G-LVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHSVFPNIYS-SM 372 (521)
Q Consensus 300 ~l~~l~~l~~~s~~~~~~~i~~~~~v~~~-----~-~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i~~-em 372 (521)
-+.+++..+.++..+++..+.+++..... . .....+..... ..-...++..+.-+..-..++....+..+ +.
T Consensus 147 ~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~ 225 (411)
T KOG1305|consen 147 NLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSF-SSLFYALPIFVFAFTCHSNVFPIYNELKDRSV 225 (411)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchh-hhhhhhhhhhheeeeccccceeeeeeeeCchH
Confidence 55577888888877776666555444333 1 11111111110 11223444444455555667777766643 34
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHHH-------hHcc-CCccchhccCCCchhHHHhHHHHHHHHhhhhhccchhch
Q 044089 373 QEPKKFPFVLMISFVFCSLLNAGVGICGY-------LMFG-DSIQSQFTLNFPKEFVASKVAIWTTVLIPMSKYAMTLTP 444 (521)
Q Consensus 373 k~p~k~~~~~~~a~~i~~~~Y~~vg~~gy-------~~fG-~~~~~~i~~n~p~~~~~~~i~~~~~~i~~~~s~pl~~~p 444 (521)
|+=++..+.......++..+-.+.|...+ +... ++...+.+.++|.......++.......++..||+...
T Consensus 226 ~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~- 304 (411)
T KOG1305|consen 226 KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN- 304 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH-
Confidence 45444333333222444444444443333 1111 23334455567888887788887777888899999988
Q ss_pred HHHHHHhhc
Q 044089 445 IALSLEELM 453 (521)
Q Consensus 445 ~~~~le~~l 453 (521)
+.+.+....
T Consensus 305 l~~~~~~~~ 313 (411)
T KOG1305|consen 305 LDELLFPYQ 313 (411)
T ss_pred HHHHhcccC
Confidence 554444433
No 120
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=41.94 E-value=23 Score=24.55 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHccCCc
Q 044089 378 FPFVLMISFVFCSLLNAGVGICGYLMFGDSI 408 (521)
Q Consensus 378 ~~~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~ 408 (521)
+..+..+++.+++++..+.|..-|.+||...
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 3456777888888888888888889999653
No 121
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=39.69 E-value=1.4e+02 Score=25.64 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=22.5
Q ss_pred ccCCCChhhHHHHHHHHHHHHHHHHHHHHHhHc
Q 044089 372 MQEPKKFPFVLMISFVFCSLLNAGVGICGYLMF 404 (521)
Q Consensus 372 mk~p~k~~~~~~~a~~i~~~~Y~~vg~~gy~~f 404 (521)
||+-+|.-+...+++.+..++++++.......+
T Consensus 1 Mk~~k~~i~~~~iGi~ig~~i~li~~~~~~~~~ 33 (136)
T PF11457_consen 1 MKIIKKIIKGFLIGIGIGSFISLIISLFYGQGF 33 (136)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444456666777888888888888776655533
No 122
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=39.52 E-value=36 Score=36.54 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=5.6
Q ss_pred CCCCCCCcc-chhc
Q 044089 55 DIQPTWPQS-YRQS 67 (521)
Q Consensus 55 ~~~~~~~~~-~~~~ 67 (521)
..++|-+++ |||+
T Consensus 153 ttS~q~~tt~~rqt 166 (727)
T PF05642_consen 153 TTSGQQLTTKQRQT 166 (727)
T ss_pred cccCCCCccccccc
Confidence 344444444 3443
No 123
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=37.91 E-value=5e+02 Score=27.25 Aligned_cols=159 Identities=16% Similarity=0.187 Sum_probs=86.9
Q ss_pred HHHHHHhhhcccccchhhhhhhccCCCChhhH-HHHHHHHHHHHHHH-HHHHHHhHccCCccchhccCCCchhHH---Hh
Q 044089 350 VTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFV-LMISFVFCSLLNAG-VGICGYLMFGDSIQSQFTLNFPKEFVA---SK 424 (521)
Q Consensus 350 ~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~-~~~a~~i~~~~Y~~-vg~~gy~~fG~~~~~~i~~n~p~~~~~---~~ 424 (521)
.....+-.+......-+++-+=.+.-++-.+. +..+..+..+.+++ ..+.++..|+ .+..+-+.+... ..
T Consensus 194 ~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~-----~~~~~~~~~il~~~~~~ 268 (415)
T COG0814 194 YLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFG-----CFGSLVFGNILAAKEQN 268 (415)
T ss_pred HHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCcccHHHHHHccCch
Confidence 34444444454444444444444444566675 66666555555443 4555666665 222222222211 11
Q ss_pred HHHHHHHH----hhhhhccchhchHHHHHHhhcCC----------Cccc-c-chhhhHHHHHHHHHHHHHHhhcc-cHHH
Q 044089 425 VAIWTTVL----IPMSKYAMTLTPIALSLEELMPS----------KELQ-S-YSVSVIIRTILAISTLVVALTLP-YFGI 487 (521)
Q Consensus 425 i~~~~~~i----~~~~s~pl~~~p~~~~le~~l~~----------~~~~-~-~~~~~~~~~~~~~~~~~va~~vp-~~~~ 487 (521)
........ +...+++...+++.......+.. ...+ . +..|..........+.+.++..| -+..
T Consensus 269 ~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~ 348 (415)
T COG0814 269 ISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAI 348 (415)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 22222211 22255677777766544332211 1111 1 11145566666777777888777 5778
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHh
Q 044089 488 VMSLIGSLLAMLITLIFPCVFYLKIL 513 (521)
Q Consensus 488 vi~l~G~~~~~~i~~ilP~l~~l~~~ 513 (521)
..+..|.+...+.+-++|.+++++-+
T Consensus 349 ~~~~~~~~~~~iga~i~~~ll~~~p~ 374 (415)
T COG0814 349 ALGYAGGLIATIGAPIIPALLFIKPR 374 (415)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889988899999999999999863
No 124
>PHA02664 hypothetical protein; Provisional
Probab=37.82 E-value=30 Score=34.29 Aligned_cols=12 Identities=25% Similarity=0.227 Sum_probs=4.3
Q ss_pred cchhhhhhhccc
Q 044089 6 EDLGRERQAETL 17 (521)
Q Consensus 6 ~~~~~~~~~~~~ 17 (521)
++-+-|..+|++
T Consensus 427 qdve~~~~~~~d 438 (534)
T PHA02664 427 QDVEAEAHDEFD 438 (534)
T ss_pred cccccccCCCCC
Confidence 333333333333
No 125
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=37.80 E-value=31 Score=23.65 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHccCCc
Q 044089 381 VLMISFVFCSLLNAGVGICGYLMFGDSI 408 (521)
Q Consensus 381 ~~~~a~~i~~~~Y~~vg~~gy~~fG~~~ 408 (521)
+...++.+.+++-.+.|..-|.+||...
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4566777888888888888899998543
No 126
>PF10488 PP1c_bdg: Phosphatase-1 catalytic subunit binding region; InterPro: IPR019523 This entry represents the conserved C terminus of the regulatory subunit (15A and 15B) of protein phosphatase 1. This C-terminal domain appears to be a binding region for the catalytic subunit (PP1C) of protein phosphatase-1, which may in some circumstances also be retroviral in origin since it is found in both herpes simplex virus and in mouse and man. This domain is found in Gadd-34 apoptosis-associated proteins as well as the constitutive repressor of eIF2-alpha phosphorylation/protein phosphatase 1, regulatory (inhibitor) subunit 15b, otherwise known as CReP. Diverse stressful conditions are associated with phosphorylation of the alpha-subunit of eukaryotic translation initiation factor 2 (eIF2-alpha) on serine 51. This signaling event, which is conserved from yeast to mammals, negatively regulates the guanine nucleotide exchange factor, eIF2-B and inhibits the recycling of eIF2 to its active GTP bound form. In mammalian cells eIF2-alpha phosphorylation emerges as an important event in stress signaling that impacts on gene expression at both the translational and transcriptional levels [].
Probab=37.06 E-value=16 Score=36.15 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=12.0
Q ss_pred CCCCCccchhcccccc
Q 044089 57 QPTWPQSYRQSMDIYS 72 (521)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (521)
-+-| .|+-+|+|+|-
T Consensus 64 ~~LW-~s~~~s~dpyn 78 (307)
T PF10488_consen 64 LHLW-NSFCESVDPYN 78 (307)
T ss_pred HHHH-HHhhhccCCCC
Confidence 4668 88888999985
No 127
>CHL00020 psbN photosystem II protein N
Probab=36.47 E-value=22 Score=24.26 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHccCCc
Q 044089 380 FVLMISFVFCSLLNAGVGICGYLMFGDSI 408 (521)
Q Consensus 380 ~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~ 408 (521)
.+..+++.+.+++..+.|..-|.+||...
T Consensus 3 ~A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 3 TATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred chhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 35667777888888888888888999653
No 128
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=35.13 E-value=1.4e+02 Score=31.87 Aligned_cols=157 Identities=12% Similarity=0.139 Sum_probs=87.3
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHhhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCc-chhHHHH
Q 044089 234 FGITGRLIVAIVLYLELFAASIEYL-IMMSDNLASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDL-TLLSYIS 311 (521)
Q Consensus 234 fG~~~~~l~~~~~~~~~~g~~v~y~-i~~~~~l~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l-~~l~~~s 311 (521)
-+|-+.+++.+.+.+.+++..++.- +..+.-|..++|.+.. ..+..++..+.+.+++|=.++.+- +.+..++
T Consensus 339 G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyin------IrRG~~~~a~ia~a~~PWnll~SSs~F~t~Ls 412 (572)
T KOG2466|consen 339 GARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYIN------IRRGALICAIIAWAICPWNLLSSSSKFLTALS 412 (572)
T ss_pred ccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceEE------ecccHHHHHHHHHHhCchHHhccccHHHHHHH
Confidence 3457778888888887777766544 4455667777776542 233456666778889998777643 3344444
Q ss_pred HHHHHHHHHHHHhhhheecc-c---ccc--cCC-CCccc-CCCch-hHHHHHHhhhcccccchhhhhhhccCCCC-----
Q 044089 312 VGGVITTGVVVLCLLWIGLV-D---AVG--FHP-YGTAL-DLSNL-PVTIGLYGFAYAGHSVFPNIYSSMQEPKK----- 377 (521)
Q Consensus 312 ~~~~~~~i~~~~~v~~~~~~-~---~~~--~~~-~~~~~-~~~~~-~~a~~~~~faf~g~~~~~~i~~emk~p~k----- 377 (521)
..+++..=+..+.+.=..+. . ++. +.. ++... ...++ +. ..+.|-....+++|-+..|..+..+
T Consensus 413 sysvfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G~NwR--A~vA~vcG~~P~lpG~a~~V~~~~~v~~G~ 490 (572)
T KOG2466|consen 413 SYSVFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKGINWR--AFVAYVCGMAPNLPGFAGSVGADIKVPDGA 490 (572)
T ss_pred HHHHHHhhccceEeehhheeecceeeeeeeeecCCCceeeeecCccHH--HHHHHHhccccCCcchhhhcCcccccccce
Confidence 44444433222222111111 1 111 111 11111 11111 12 2344556677899999988875433
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHH
Q 044089 378 ---FPFVLMISFVFCSLLNAGVGI 398 (521)
Q Consensus 378 ---~~~~~~~a~~i~~~~Y~~vg~ 398 (521)
+-.....++.+.++.|.....
T Consensus 491 ~~~yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 491 VKLYYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred EEEEechHHHHHHHHHHHHHHHHh
Confidence 334777888888888887654
No 129
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=33.21 E-value=26 Score=40.99 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=12.7
Q ss_pred CCCCchHHHHHHHHHhhhhhhh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGL 181 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GI 181 (521)
.+++|...+.....+..-|+|-
T Consensus 1940 d~s~Sqgaa~a~AAgeasgagS 1961 (3015)
T KOG0943|consen 1940 DGSISQGAAAAAAAGEASGAGS 1961 (3015)
T ss_pred cCccchHHHHHHHhhcccCCCc
Confidence 3445555566666666666653
No 130
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=32.64 E-value=6.3e+02 Score=26.85 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=41.8
Q ss_pred chHHHHHHHHHhhhhhhhhHhHHHH-Hhhc--HH-HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHH
Q 044089 164 SLAQSCLNGINVLCGVGLLATPYAI-KEGG--WS-SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGR 239 (521)
Q Consensus 164 s~~~~v~~li~~iiG~GILslP~a~-~~~G--~~-g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~ 239 (521)
..+..-+.+..--.|+|=|..|-.. +++| |. +.+.+++.++.--.-+.+-.- +.+ .++.+++++. ||+..
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava---~~~--g~~~~l~~rv-~~~f~ 82 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA---KVG--GGVDSLSTPI-GKVAG 82 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh---hcC--CCHHHHhhhc-chHHH
Confidence 3555667788889999988888776 3566 44 655555555433333222211 122 3677777643 34444
Q ss_pred HHHH
Q 044089 240 LIVA 243 (521)
Q Consensus 240 ~l~~ 243 (521)
.+..
T Consensus 83 ~~f~ 86 (439)
T PRK15433 83 VLLA 86 (439)
T ss_pred HHHH
Confidence 3333
No 131
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.06 E-value=6.5e+02 Score=26.84 Aligned_cols=16 Identities=44% Similarity=0.825 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 044089 387 VFCSLLNAGVGICGYL 402 (521)
Q Consensus 387 ~i~~~~Y~~vg~~gy~ 402 (521)
.++..+.+..|..||.
T Consensus 562 ~f~~~lgim~Gtigy~ 577 (593)
T KOG1277|consen 562 VFCYALGLMCGTIGYV 577 (593)
T ss_pred HHHHHHHHHHhhHhhh
Confidence 4555555666666554
No 132
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=30.29 E-value=6.6e+02 Score=26.31 Aligned_cols=53 Identities=8% Similarity=-0.003 Sum_probs=25.7
Q ss_pred ccCCCchhHHHHHHhhhcccccchhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHH
Q 044089 342 ALDLSNLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGI 398 (521)
Q Consensus 342 ~~~~~~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~~i~~~~Y~~vg~ 398 (521)
..+++++..++-...-...|..... ++..+.+.-..+........++++++++
T Consensus 361 ~~~f~s~~~s~~tl~~~l~g~~~~~----~~~~~~~~lg~l~~~~~~~~~~~illNl 413 (425)
T PF08016_consen 361 SEDFSSFSSSLVTLFRMLLGDFDYD----ELYQANPVLGPLFFFSFMFLVFFILLNL 413 (425)
T ss_pred ccccCCHHHHHHHHHHHhcCCCchh----hhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777765544444543332 5555554433333333333444444444
No 133
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=29.26 E-value=1.2e+02 Score=32.62 Aligned_cols=38 Identities=29% Similarity=0.658 Sum_probs=27.5
Q ss_pred HhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhhCC
Q 044089 183 ATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDSAP 221 (521)
Q Consensus 183 slP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~~~ 221 (521)
+.|.+- .+=|+ .+++++++++++++++...-+|.+..+
T Consensus 472 s~pKan-K~LWIsvAliVLLAaLlSfLtg~~fq~~vdaAp 510 (538)
T PF05781_consen 472 SFPKAN-KVLWISVALIVLLAALLSFLTGLFFQRCVDAAP 510 (538)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHhcccccchhccCC
Confidence 345444 55577 777788889999999987777776544
No 134
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=29.04 E-value=7.7e+02 Score=26.74 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=19.4
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLAT 184 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILsl 184 (521)
+++-|.++-+..+..+-+|+|++.-
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfw 107 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFW 107 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhh
Confidence 5667777778888888999998753
No 135
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=28.45 E-value=94 Score=20.43 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=16.1
Q ss_pred hhcHH--HHHHHHHHHHHHHHHH
Q 044089 190 EGGWS--SLSLLFIFGIIAFYTG 210 (521)
Q Consensus 190 ~~G~~--g~illl~~~~l~~~t~ 210 (521)
+=||+ |+.+++++.++..|+.
T Consensus 13 Er~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 13 ERGWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 55787 8888888888877775
No 136
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=28.04 E-value=8.2e+02 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.008 Sum_probs=17.9
Q ss_pred CCCCchHHHHHHHHHhhhhhhhhHh
Q 044089 160 ARKCSLAQSCLNGINVLCGVGLLAT 184 (521)
Q Consensus 160 ~~~~s~~~~v~~li~~iiG~GILsl 184 (521)
+.+-+..+-++.+..+-+|+|++.-
T Consensus 85 ~PEfs~~SW~aMLFaAGmGigl~fw 109 (537)
T COG1292 85 KPEFSTLSWLAMLFAAGMGIGLLFW 109 (537)
T ss_pred CCCcchhHHHHHHHHcccCceeeEe
Confidence 3445666667788888899997643
No 137
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=27.88 E-value=1.6e+02 Score=21.20 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHccCCcc
Q 044089 380 FVLMISFVFCSLLNAGVGICGYLMFGDSIQ 409 (521)
Q Consensus 380 ~~~~~a~~i~~~~Y~~vg~~gy~~fG~~~~ 409 (521)
+-+++=.++..++|++.|++-+..+.+++.
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~~~ 52 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSNDDK 52 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCccc
Confidence 455566778899999999998887776554
No 138
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=27.73 E-value=8e+02 Score=26.46 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=18.4
Q ss_pred HhhhcccccchhhhhhhccCCCChhhHHHH
Q 044089 355 YGFAYAGHSVFPNIYSSMQEPKKFPFVLMI 384 (521)
Q Consensus 355 ~~faf~g~~~~~~i~~emk~p~k~~~~~~~ 384 (521)
..|+..-...+|...... |+++.|....+
T Consensus 308 ~l~~~ardg~lP~~~~k~-nk~~~P~~a~~ 336 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKM-NKHEVPVPLVI 336 (507)
T ss_pred HHHHhcccCCcCHHHHhh-CcCCCcHHHHH
Confidence 456666677788777776 35566754443
No 139
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=27.58 E-value=7.2e+02 Score=25.93 Aligned_cols=187 Identities=17% Similarity=0.091 Sum_probs=0.0
Q ss_pred hhhhhhhHhHH------HHHhhcHH--HHHHHHHHHHHHHHHHHHHHHhHhh-----CCCCCChHHHHHHHhChhHHHHH
Q 044089 176 LCGVGLLATPY------AIKEGGWS--SLSLLFIFGIIAFYTGILLQECLDS-----APGLTTYPDVGQAAFGITGRLIV 242 (521)
Q Consensus 176 iiG~GILslP~------a~~~~G~~--g~illl~~~~l~~~t~~lL~~~~~~-----~~~~~sY~~i~~~~fG~~~~~l~ 242 (521)
.+|.|++++|. +++..--+ |+++--+.-.+-..++++.+-.-+. .+.+.--+.++-+.+-+....+.
T Consensus 243 lv~~gvlglP~t~vr~ia~kDskaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agif 322 (473)
T COG4145 243 LVCFGVLGLPHTAVRCIAFKDSKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIF 322 (473)
T ss_pred HHHHHHhcCcHHHHHHHhccchhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH-hhhccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHHHHHHHHHHHH
Q 044089 243 AIVLYLELFAASIEYLIMMSDNL-ASLFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYISVGGVITTGVV 321 (521)
Q Consensus 243 ~~~~~~~~~g~~v~y~i~~~~~l-~~l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s~~~~~~~i~~ 321 (521)
-.........+.=+.++..+..+ ..++.+.. + +.++=+.+..++.+++++.
T Consensus 323 l~apmaAiMSTIds~L~~~sstliKdLy~~~~-~---------------------------~~~~E~ki~~is~~~t~i~ 374 (473)
T COG4145 323 LAAPMAAIMSTINSQLLQSSSTLIKDLYLNVR-D---------------------------KLKNERKIKRISMIATLIF 374 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H---------------------------HhhhHHHHHHHHHHHHHHH
Q ss_pred HHhhhheecccccccCCCCcccCCCchhHHHHHHhhhccccc--chhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 044089 322 VLCLLWIGLVDAVGFHPYGTALDLSNLPVTIGLYGFAYAGHS--VFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGIC 399 (521)
Q Consensus 322 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~g~~--~~~~i~~emk~p~k~~~~~~~a~~i~~~~Y~~vg~~ 399 (521)
.+.++...+.... .-+-+-.|||.|.+ .++++.-.+--.+--......++....+.|+.....
T Consensus 375 ~~l~~i~al~Pp~---------------~iiwlnlfAfggle~~Fl~plvlgLYw~kaNa~ga~aSMi~g~~~y~~l~~~ 439 (473)
T COG4145 375 GALLLIAALNPPE---------------MIIWLNLFAFGGLEAVFLWPLVLGLYWEKANAAGALASMIVGLVLYVLLAFL 439 (473)
T ss_pred HHHHHHHhhCCcc---------------eeeeeehhhhcchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHcc
Q 044089 400 GYLMFG 405 (521)
Q Consensus 400 gy~~fG 405 (521)
++-.|+
T Consensus 440 ~~ki~~ 445 (473)
T COG4145 440 GIKILG 445 (473)
T ss_pred hhHhhe
No 140
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=27.51 E-value=65 Score=33.42 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=24.8
Q ss_pred CCCCCccchhccccccccCCCcc-cccCCCc-ccccc
Q 044089 57 QPTWPQSYRQSMDIYSTVTSPSL-GFLKPSS-LSALS 91 (521)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~-~~r~~ 91 (521)
+++-|.+..+..+....++-||+ ||+.+|. +-|++
T Consensus 271 ~a~lpp~~P~~f~P~~~ipfp~llGF~n~P~RiyRFf 307 (382)
T PF11711_consen 271 SAPLPPELPAEFQPSLPIPFPHLLGFLNTPRRIYRFF 307 (382)
T ss_pred CCCCCCCCCCCCCCceEecCcccccccccHHHHHHHH
Confidence 34455556666677788899998 9998776 65654
No 141
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.50 E-value=3.4e+02 Score=29.62 Aligned_cols=192 Identities=9% Similarity=0.046 Sum_probs=0.0
Q ss_pred hhcHH--HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 044089 190 EGGWS--SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLAS 267 (521)
Q Consensus 190 ~~G~~--g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~ 267 (521)
.+++. .+++.+++|+++-|....|-+.. -|+.++...-.+ ++..--+++..-.+-.
T Consensus 361 RGsLmT~~~~l~v~~G~~agY~s~rlyk~~----------------~g~~wk~~~~lt------a~l~PGivf~~~f~lN 418 (628)
T KOG1278|consen 361 RGSLMTAMVLLFVFMGFVAGYVSARLYKTF----------------KGREWKRNAILT------AFLFPGIVFAIFFVLN 418 (628)
T ss_pred cccHHHHHHHHHHHHHHhhhhhhhhhHhhh----------------cCCcchhhHHhh------hhhcchHHHHHHHHHH
Q ss_pred hccccCCCCCCccccchhHHHHHHHHHHHhhhcccCcchhHHHH------------------------------------
Q 044089 268 LFPHTSMNFGGLHLDCHKIFSITATLVVLPTVWLRDLTLLSYIS------------------------------------ 311 (521)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~i~~~lii~pl~~l~~l~~l~~~s------------------------------------ 311 (521)
++--.....+......-....++..++.+|++++-..-..+.-.
T Consensus 419 ~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg 498 (628)
T KOG1278|consen 419 FFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFG 498 (628)
T ss_pred HHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchH
Q ss_pred --------------------HHHHHHHHHHHHhhhheecccccccC---CCCcccCCCchhHHHHHHhhhcccccchhhh
Q 044089 312 --------------------VGGVITTGVVVLCLLWIGLVDAVGFH---PYGTALDLSNLPVTIGLYGFAYAGHSVFPNI 368 (521)
Q Consensus 312 --------------------~~~~~~~i~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~faf~g~~~~~~i 368 (521)
..|+.+.+++++++...-+.--..+. .+...+-|..+.++-+..+|-|..-......
T Consensus 499 ~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~ 578 (628)
T KOG1278|consen 499 AIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFT 578 (628)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhhe
Q ss_pred hhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHhH
Q 044089 369 YSSMQEPKKFPFVLMISFVFCSLLNAGVGICGYLM 403 (521)
Q Consensus 369 ~~emk~p~k~~~~~~~a~~i~~~~Y~~vg~~gy~~ 403 (521)
-=+.....-...-..-+.+++..+.++.|..||++
T Consensus 579 kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a 613 (628)
T KOG1278|consen 579 KLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLA 613 (628)
T ss_pred eeeecccchhHHHHHHHHHHHHHHHHHhccHHHHH
No 142
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.59 E-value=1.5e+02 Score=23.95 Aligned_cols=40 Identities=8% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHhhcccHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 044089 473 ISTLVVALTLPYFGIVMSLIGSLLAMLITLIFPCVFYLKI 512 (521)
Q Consensus 473 ~~~~~va~~vp~~~~vi~l~G~~~~~~i~~ilP~l~~l~~ 512 (521)
++.++.....-.++..+-.+|+-+......++|++=+++-
T Consensus 37 iVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 37 IVGFIYGFAQQQLSVTVYIVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhc
Confidence 3344555556678888888888888888899999988873
No 143
>PF07415 Herpes_LMP2: Gammaherpesvirus latent membrane protein (LMP2) protein; InterPro: IPR010881 This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) is a human gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear [].; GO: 0019042 latent virus infection, 0033644 host cell membrane; PDB: 2JO9_B 1UXW_C.
Probab=24.33 E-value=26 Score=35.22 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=0.0
Q ss_pred HhHHHHHhh
Q 044089 183 ATPYAIKEG 191 (521)
Q Consensus 183 slP~a~~~~ 191 (521)
..||-|--+
T Consensus 126 ~aPyLFWla 134 (489)
T PF07415_consen 126 IAPYLFWLA 134 (489)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 344444333
No 144
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=23.31 E-value=9.1e+02 Score=25.59 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=36.6
Q ss_pred hHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcc
Q 044089 226 YPDVGQAAFGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLFP 270 (521)
Q Consensus 226 Y~~i~~~~fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~~ 270 (521)
..++.++.+|+++..++.+...+..+++..+++...+..+..+-.
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amar 314 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAK 314 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788899999988888888888888888888888877766643
No 145
>PF05756 S-antigen: S-antigen protein; InterPro: IPR008825 S-antigens are heat stable proteins that are found in the blood of individuals infected with malaria [].
Probab=23.02 E-value=36 Score=26.31 Aligned_cols=13 Identities=46% Similarity=0.565 Sum_probs=6.8
Q ss_pred CCcCCCCCCCCCC
Q 044089 29 GEIEDDSGSESSS 41 (521)
Q Consensus 29 ~~~~~~~~~~~~~ 41 (521)
.|||+|+.++++.
T Consensus 68 nddeedsnsees~ 80 (94)
T PF05756_consen 68 NDDEEDSNSEESN 80 (94)
T ss_pred Ccccccccchhcc
Confidence 4555555555444
No 146
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=22.70 E-value=44 Score=40.72 Aligned_cols=15 Identities=20% Similarity=0.514 Sum_probs=7.4
Q ss_pred ccccchhhhhhhccC
Q 044089 360 AGHSVFPNIYSSMQE 374 (521)
Q Consensus 360 ~g~~~~~~i~~emk~ 374 (521)
....++|-...|-++
T Consensus 642 ~niem~p~~lke~~~ 656 (2849)
T PTZ00415 642 ANIEIFPKMLKDEKK 656 (2849)
T ss_pred cChhccchhhhhhhh
Confidence 344555655555433
No 147
>PHA03132 thymidine kinase; Provisional
Probab=22.41 E-value=6.5e+02 Score=27.83 Aligned_cols=16 Identities=19% Similarity=0.011 Sum_probs=7.5
Q ss_pred hHHHHHHHHHhhhhhh
Q 044089 165 LAQSCLNGINVLCGVG 180 (521)
Q Consensus 165 ~~~~v~~li~~iiG~G 180 (521)
+.+.+.+.++.=-+.+
T Consensus 213 ls~S~~~~l~~~~~~~ 228 (580)
T PHA03132 213 LSGSLKNLLHLDDSAE 228 (580)
T ss_pred hhHhhhhhhccCCCCC
Confidence 4445555555444433
No 148
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.82 E-value=68 Score=37.81 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.5
Q ss_pred HHHHhC
Q 044089 230 GQAAFG 235 (521)
Q Consensus 230 ~~~~fG 235 (521)
+++.||
T Consensus 2061 Aqrlfg 2066 (3015)
T KOG0943|consen 2061 AQRLFG 2066 (3015)
T ss_pred Hhhhhh
Confidence 344444
No 149
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=21.18 E-value=4.6e+02 Score=22.19 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=32.0
Q ss_pred chHHHHHHHHHhhhhhhhhHhHHHHH--h--hcHH-HHHHHH---HHHHHHHHHHHHHHHhHhhCCCCCChHHH
Q 044089 164 SLAQSCLNGINVLCGVGLLATPYAIK--E--GGWS-SLSLLF---IFGIIAFYTGILLQECLDSAPGLTTYPDV 229 (521)
Q Consensus 164 s~~~~v~~li~~iiG~GILslP~a~~--~--~G~~-g~illl---~~~~l~~~t~~lL~~~~~~~~~~~sY~~i 229 (521)
.|...++.+.--++|+..+.+...+. . ...- ++.+++ ++.+=++|-..++..+.+..+| ++|.+|
T Consensus 40 pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~G-ysf~~I 112 (115)
T PF05915_consen 40 PWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKG-YSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCC-CCHhhC
Confidence 45555555555566666666665432 1 1122 332222 2233344555666666655555 677654
No 150
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=21.13 E-value=7.5e+02 Score=23.81 Aligned_cols=49 Identities=16% Similarity=0.385 Sum_probs=27.4
Q ss_pred CchHHHHHHHHHhhhhhhhhHhHHHHHhhcHHHHHHHHHH---HHHHHHHHHHHH
Q 044089 163 CSLAQSCLNGINVLCGVGLLATPYAIKEGGWSSLSLLFIF---GIIAFYTGILLQ 214 (521)
Q Consensus 163 ~s~~~~v~~li~~iiG~GILslP~a~~~~G~~g~illl~~---~~l~~~t~~lL~ 214 (521)
.+..-+++.+++.++ +++.|+.=.+-||+|++..+-. .+.++.+-+.+.
T Consensus 104 l~~vl~~Lllvdlil---il~V~~~R~~eG~vGi~s~iWa~l~~l~~~~~D~~v~ 155 (232)
T PF10329_consen 104 LNIVLAGLLLVDLIL---ILAVPYTRHEEGWVGIASVIWAFLSSLWGILADRYVE 155 (232)
T ss_pred HHHHHHHHHHHHHHH---HHhhHhHHhHhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555544 4566666667788877776633 344444444453
No 151
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=21.04 E-value=9.8e+02 Score=25.12 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=16.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 044089 489 MSLIGSLLAMLITLIFPCVFYLK 511 (521)
Q Consensus 489 i~l~G~~~~~~i~~ilP~l~~l~ 511 (521)
+++.|+..+..++..+-+++.+.
T Consensus 188 ~Gi~Gaa~At~is~~~~~~~~~~ 210 (453)
T PRK09575 188 WGLTGAAIATALAQLVVTVLGLG 210 (453)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 67888887887777777665443
No 152
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.41 E-value=72 Score=32.81 Aligned_cols=8 Identities=13% Similarity=0.327 Sum_probs=4.2
Q ss_pred ccCCCccc
Q 044089 73 TVTSPSLG 80 (521)
Q Consensus 73 ~~~~p~~~ 80 (521)
..++|++.
T Consensus 355 Aq~lp~i~ 362 (514)
T KOG3130|consen 355 AQELPTIR 362 (514)
T ss_pred cccCCccC
Confidence 44556653
No 153
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=20.27 E-value=6.8e+02 Score=26.41 Aligned_cols=67 Identities=24% Similarity=0.190 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHhHh-hCCCCCChHHHHHHH----hChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhc
Q 044089 203 GIIAFYTGILLQECLD-SAPGLTTYPDVGQAA----FGITGRLIVAIVLYLELFAASIEYLIMMSDNLASLF 269 (521)
Q Consensus 203 ~~l~~~t~~lL~~~~~-~~~~~~sY~~i~~~~----fG~~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~~l~ 269 (521)
-++|..|+..+...-. ......+=..+.+++ +|.++..++.+++++..|.+.+.+......++..++
T Consensus 267 iiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 267 IIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455566665544321 111212223444444 567889999999999999999999999999999988
No 154
>PF08595 RXT2_N: RXT2-like, N-terminal; InterPro: IPR013904 The entry represents the N-terminal region of RXT2-like proteins. In Saccharomyces cerevisiae (Baker's yeast), RXT2 has been demonstrated to be involved in conjugation with cellular fusion (mating) and invasive growth []. A high throughput localisation study has localised RXT2 to the nucleus [].
Probab=20.23 E-value=43 Score=29.84 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=2.8
Q ss_pred CCccccc
Q 044089 84 PSSLSAL 90 (521)
Q Consensus 84 ~~~~~r~ 90 (521)
.|.+||-
T Consensus 106 HPaiS~~ 112 (149)
T PF08595_consen 106 HPAISRT 112 (149)
T ss_pred Ccccccc
Confidence 3444333
Done!