Query 044089
Match_columns 521
No_of_seqs 251 out of 1699
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 19:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 97.7 0.026 1.9E-06 57.1 31.8 103 163-266 5-113 (509)
2 d1xmec1 f.23.9.1 (C:2-34) Bact 10.6 61 0.0044 17.8 1.6 18 312-329 7-24 (33)
3 d1xmeb2 f.17.2.1 (B:3-36) Bact 10.2 1.2E+02 0.0089 16.4 2.8 18 190-207 13-32 (34)
4 d1nekd_ f.21.2.2 (D:) Succinat 4.3 3.3E+02 0.024 19.5 3.7 53 347-399 56-108 (113)
5 d1qkla_ a.143.1.2 (A:) RPB6 {H 3.6 2E+02 0.015 21.6 1.8 6 74-79 52-57 (127)
6 d1vf5c3 f.23.23.1 (C:250-286) 3.5 4.4E+02 0.032 15.0 2.9 21 500-520 13-33 (37)
7 d1mv8a2 c.2.1.6 (A:1-202) GDP- 2.5 2E+02 0.014 23.0 0.6 14 175-188 4-17 (202)
8 d1g40a1 g.18.1.1 (A:1-64) Comp 2.4 1.5E+02 0.011 18.3 -0.2 6 1-6 11-16 (64)
9 d2axtm1 f.23.35.1 (M:1-36) Pho 2.4 6E+02 0.043 14.2 3.1 20 494-513 7-26 (36)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 2.2 1.2E+03 0.087 19.2 6.1 61 159-219 373-436 (447)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=97.73 E-value=0.026 Score=57.10 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=65.6
Q ss_pred CchHHHHHHHHHhhhhhh-hhHhHHHH-HhhcHH----HHHHHHHHHHHHHHHHHHHHHhHhhCCCCCChHHHHHHHhCh
Q 044089 163 CSLAQSCLNGINVLCGVG-LLATPYAI-KEGGWS----SLSLLFIFGIIAFYTGILLQECLDSAPGLTTYPDVGQAAFGI 236 (521)
Q Consensus 163 ~s~~~~v~~li~~iiG~G-ILslP~a~-~~~G~~----g~illl~~~~l~~~t~~lL~~~~~~~~~~~sY~~i~~~~fG~ 236 (521)
.|..+-++..++..+|-| +-=.||-. +++|.. =+++++++|+=..+.-..++|.. +.+....+..+.....+.
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~-~~g~i~~~~~i~~~~~~~ 83 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYG-GAQGHGTTPAIFYLLWRN 83 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTTCCSHHHHHHHHSCS
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHhccC
Confidence 366788999999999999 77799974 677743 34444455555556666777754 566778888877766553
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 044089 237 TGRLIVAIVLYLELFAASIEYLIMMSDNLA 266 (521)
Q Consensus 237 ~~~~l~~~~~~~~~~g~~v~y~i~~~~~l~ 266 (521)
+.-..+.+..++..+..++-|.++.+-.+.
T Consensus 84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l~ 113 (509)
T d2a65a1 84 RFAKILGVFGLWIPLVVAIYYVYIESWTLG 113 (509)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322333444444444455555555555443
No 2
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=10.61 E-value=61 Score=17.81 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhhhhee
Q 044089 312 VGGVITTGVVVLCLLWIG 329 (521)
Q Consensus 312 ~~~~~~~i~~~~~v~~~~ 329 (521)
.++++.++...+.++|.|
T Consensus 7 al~vi~il~l~ilvfw~g 24 (33)
T d1xmec1 7 ALAVILVLTLTILVFWLG 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 3
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=10.21 E-value=1.2e+02 Score=16.45 Aligned_cols=18 Identities=44% Similarity=0.866 Sum_probs=9.1
Q ss_pred hhcHH--HHHHHHHHHHHHH
Q 044089 190 EGGWS--SLSLLFIFGIIAF 207 (521)
Q Consensus 190 ~~G~~--g~illl~~~~l~~ 207 (521)
+-||+ ++.++.++-.+..
T Consensus 13 ekgwlafslamlfvfialia 32 (34)
T d1xmeb2 13 EKGWLAFSLAMLFVFIALIA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHh
Confidence 56887 4444444433333
No 4
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.30 E-value=3.3e+02 Score=19.46 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=33.2
Q ss_pred chhHHHHHHhhhcccccchhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHH
Q 044089 347 NLPVTIGLYGFAYAGHSVFPNIYSSMQEPKKFPFVLMISFVFCSLLNAGVGIC 399 (521)
Q Consensus 347 ~~~~a~~~~~faf~g~~~~~~i~~emk~p~k~~~~~~~a~~i~~~~Y~~vg~~ 399 (521)
.+...+......|-++.-+-.+.++--++++.++.+.....+..+.+.+.++.
T Consensus 56 ~il~~l~l~~~~~H~~lGl~~IieDYi~~~~~r~~~~~~~~~~~~~~~~~~i~ 108 (113)
T d1nekd_ 56 KVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFV 108 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566667777777777777777766666666666655543
No 5
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.64 E-value=2e+02 Score=21.63 Aligned_cols=6 Identities=33% Similarity=0.866 Sum_probs=2.8
Q ss_pred cCCCcc
Q 044089 74 VTSPSL 79 (521)
Q Consensus 74 ~~~p~~ 79 (521)
.++|-+
T Consensus 52 ~T~p~l 57 (127)
T d1qkla_ 52 ITTPYM 57 (127)
T ss_dssp SCCSSC
T ss_pred ccCCcc
Confidence 344544
No 6
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.53 E-value=4.4e+02 Score=15.03 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCC
Q 044089 500 ITLIFPCVFYLKILQGKISKL 520 (521)
Q Consensus 500 i~~ilP~l~~l~~~~~~~~r~ 520 (521)
++.++.+=..+.++|++..|-
T Consensus 13 ~~~v~laQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 13 ICLVMLAQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677776654
No 7
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.54 E-value=2e+02 Score=22.99 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=10.6
Q ss_pred hhhhhhhhHhHHHH
Q 044089 175 VLCGVGLLATPYAI 188 (521)
Q Consensus 175 ~iiG~GILslP~a~ 188 (521)
++||.|-+++|.|.
T Consensus 4 ~ViGlG~vGl~~a~ 17 (202)
T d1mv8a2 4 SIFGLGYVGAVCAG 17 (202)
T ss_dssp EEECCSTTHHHHHH
T ss_pred EEECCCHhHHHHHH
Confidence 46788888888764
No 8
>d1g40a1 g.18.1.1 (A:1-64) Complement control protein {Vaccinia virus [TaxId: 10245]}
Probab=2.45 E-value=1.5e+02 Score=18.32 Aligned_cols=6 Identities=33% Similarity=0.722 Sum_probs=2.6
Q ss_pred CCCCCc
Q 044089 1 MKMQDE 6 (521)
Q Consensus 1 ~~~~~~ 6 (521)
||+++.
T Consensus 11 mkfkns 16 (64)
T d1g40a1 11 MKFKNS 16 (64)
T ss_dssp CCEECS
T ss_pred cccccc
Confidence 444443
No 9
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.38 E-value=6e+02 Score=14.22 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 044089 494 SLLAMLITLIFPCVFYLKIL 513 (521)
Q Consensus 494 ~~~~~~i~~ilP~l~~l~~~ 513 (521)
++....+..++|..+.+.++
T Consensus 7 g~iAt~LFilvPt~FLliLy 26 (36)
T d2axtm1 7 GLIATALFVLVPSVFLIILY 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.17 E-value=1.2e+03 Score=19.21 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=0.0
Q ss_pred CCCCCchHHHHHHHHHhhhhh--hhhHhHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhHhh
Q 044089 159 PARKCSLAQSCLNGINVLCGV--GLLATPYAIKEGGWS-SLSLLFIFGIIAFYTGILLQECLDS 219 (521)
Q Consensus 159 ~~~~~s~~~~v~~li~~iiG~--GILslP~a~~~~G~~-g~illl~~~~l~~~t~~lL~~~~~~ 219 (521)
.++..+...++.+.++.+.|. |-+..++.....|+- ...++..+++++......+..-.++
T Consensus 373 p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (447)
T d1pw4a_ 373 PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436 (447)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhccc
Done!