Query 044090
Match_columns 279
No_of_seqs 155 out of 1461
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 11:21:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044090.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044090hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09330 cell division protein 100.0 3.8E-47 8.2E-52 366.4 21.2 165 112-278 11-175 (384)
2 PRK13018 cell division protein 100.0 1.7E-45 3.7E-50 354.4 21.6 167 110-278 24-190 (378)
3 TIGR00065 ftsZ cell division p 100.0 2.1E-45 4.5E-50 350.6 21.6 169 108-278 11-179 (349)
4 cd02201 FtsZ_type1 FtsZ is a G 100.0 4.1E-45 8.9E-50 341.4 21.0 162 115-278 1-162 (304)
5 cd02191 FtsZ FtsZ is a GTPase 100.0 7.3E-45 1.6E-49 340.7 20.1 162 115-278 1-162 (303)
6 COG0206 FtsZ Cell division GTP 100.0 1.6E-44 3.4E-49 342.9 18.9 166 111-278 8-173 (338)
7 cd02202 FtsZ_type2 FtsZ is a G 100.0 5E-40 1.1E-44 313.3 20.2 164 115-278 1-176 (349)
8 smart00864 Tubulin Tubulin/Fts 100.0 8.6E-34 1.9E-38 248.6 17.0 160 116-278 1-160 (192)
9 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.3E-33 2.9E-38 251.2 14.4 163 116-278 1-203 (216)
10 cd00286 Tubulin_FtsZ Tubulin/F 100.0 6.6E-29 1.4E-33 233.0 14.6 157 116-278 1-169 (328)
11 cd06059 Tubulin The tubulin su 99.9 1.4E-24 3.1E-29 208.5 12.7 156 117-278 2-170 (382)
12 cd02190 epsilon_tubulin The tu 99.9 5.9E-22 1.3E-26 191.1 13.7 155 116-275 2-176 (379)
13 PTZ00387 epsilon tubulin; Prov 99.8 1.2E-20 2.5E-25 186.7 14.1 158 116-278 3-211 (465)
14 cd02187 beta_tubulin The tubul 99.8 3.1E-20 6.7E-25 181.5 16.4 158 116-278 2-210 (425)
15 PLN00220 tubulin beta chain; P 99.8 3.3E-20 7.1E-25 182.3 14.5 158 116-278 3-211 (447)
16 cd02186 alpha_tubulin The tubu 99.8 8.9E-20 1.9E-24 178.7 14.7 162 116-278 2-212 (434)
17 COG5023 Tubulin [Cytoskeleton] 99.8 1.6E-19 3.5E-24 172.9 14.7 158 116-278 3-211 (443)
18 cd02189 delta_tubulin The tubu 99.8 1.4E-19 2.9E-24 178.0 14.4 162 117-278 2-206 (446)
19 PTZ00335 tubulin alpha chain; 99.8 1E-19 2.2E-24 179.1 13.5 158 116-278 3-213 (448)
20 cd02188 gamma_tubulin Gamma-tu 99.8 2.8E-19 6E-24 175.3 15.0 160 116-278 2-212 (431)
21 PLN00222 tubulin gamma chain; 99.8 3.1E-19 6.8E-24 176.0 13.8 160 116-278 4-214 (454)
22 PTZ00010 tubulin beta chain; P 99.8 1.3E-18 2.8E-23 171.1 15.2 158 116-278 3-211 (445)
23 PLN00221 tubulin alpha chain; 99.8 1.1E-18 2.5E-23 171.8 14.7 158 116-278 3-213 (450)
24 KOG1374 Gamma tubulin [Cytoske 99.6 3.2E-14 6.8E-19 137.0 15.3 159 115-278 3-214 (448)
25 PF13809 Tubulin_2: Tubulin li 99.3 9E-11 1.9E-15 111.9 13.6 146 118-263 1-221 (345)
26 KOG1376 Alpha tubulin [Cytoske 98.6 1.6E-08 3.6E-13 97.5 1.2 109 171-279 93-213 (407)
27 KOG1375 Beta tubulin [Cytoskel 98.5 5.7E-08 1.2E-12 93.6 2.0 76 203-279 77-156 (369)
28 cd06060 misato Human Misato sh 98.4 1.4E-06 2.9E-11 87.7 10.6 98 174-272 121-229 (493)
29 PRK12475 thiamine/molybdopteri 95.5 0.093 2E-06 50.5 9.5 45 109-155 19-63 (338)
30 COG0569 TrkA K+ transport syst 95.5 0.1 2.2E-06 47.2 9.3 99 115-241 1-104 (225)
31 TIGR02356 adenyl_thiF thiazole 95.1 0.13 2.8E-06 45.7 8.5 43 109-153 16-58 (202)
32 PRK06153 hypothetical protein; 94.8 0.26 5.7E-06 48.8 10.5 42 112-155 174-215 (393)
33 PF14881 Tubulin_3: Tubulin do 94.8 0.2 4.4E-06 44.3 8.8 92 179-270 42-152 (180)
34 PF00056 Ldh_1_N: lactate/mala 94.7 0.13 2.9E-06 43.2 7.3 103 115-242 1-122 (141)
35 PTZ00082 L-lactate dehydrogena 94.6 0.26 5.6E-06 47.1 9.7 37 113-151 5-41 (321)
36 PRK07688 thiamine/molybdopteri 94.4 0.38 8.1E-06 46.4 10.4 46 109-156 19-64 (339)
37 PRK05086 malate dehydrogenase; 94.2 0.46 1E-05 45.1 10.4 35 115-149 1-36 (312)
38 PRK05690 molybdopterin biosynt 94.1 0.4 8.8E-06 44.0 9.6 45 109-155 27-71 (245)
39 PRK06223 malate dehydrogenase; 93.9 0.43 9.4E-06 44.4 9.6 37 115-153 3-39 (307)
40 PF13460 NAD_binding_10: NADH( 93.9 0.6 1.3E-05 39.1 9.5 96 117-238 1-97 (183)
41 PRK08328 hypothetical protein; 93.8 0.58 1.3E-05 42.5 9.8 45 109-155 22-66 (231)
42 PRK10886 DnaA initiator-associ 93.6 1.5 3.3E-05 39.3 12.1 123 112-273 39-167 (196)
43 PTZ00117 malate dehydrogenase; 93.2 0.93 2E-05 43.1 10.7 36 113-150 4-39 (319)
44 KOG2013 SMT3/SUMO-activating c 93.1 0.21 4.5E-06 51.0 6.2 43 113-155 11-54 (603)
45 cd01483 E1_enzyme_family Super 93.0 1.1 2.4E-05 36.9 9.7 36 116-153 1-36 (143)
46 PF05368 NmrA: NmrA-like famil 92.9 3.4 7.4E-05 36.2 13.1 99 117-241 1-105 (233)
47 PRK05597 molybdopterin biosynt 92.6 0.86 1.9E-05 44.1 9.7 45 109-155 23-67 (355)
48 cd00650 LDH_MDH_like NAD-depen 92.6 1.1 2.4E-05 41.0 9.9 88 117-228 1-105 (263)
49 PRK08223 hypothetical protein; 92.3 1.4 3.1E-05 41.9 10.5 46 109-156 22-67 (287)
50 KOG2015 NEDD8-activating compl 91.9 0.31 6.7E-06 47.7 5.5 40 115-154 41-81 (422)
51 cd01486 Apg7 Apg7 is an E1-lik 91.5 1.4 3E-05 42.5 9.4 107 116-235 1-138 (307)
52 cd05293 LDH_1 A subgroup of L- 91.3 2.1 4.6E-05 40.7 10.5 35 114-149 3-37 (312)
53 PF01488 Shikimate_DH: Shikima 90.9 0.56 1.2E-05 38.9 5.5 42 111-154 9-50 (135)
54 PRK09496 trkA potassium transp 90.7 1.8 3.8E-05 42.0 9.6 99 115-240 1-102 (453)
55 cd05298 GH4_GlvA_pagL_like Gly 90.7 2.9 6.3E-05 41.9 11.2 83 115-212 1-86 (437)
56 TIGR00561 pntA NAD(P) transhyd 90.7 4.6 9.9E-05 41.5 12.8 98 111-212 161-259 (511)
57 PRK08644 thiamine biosynthesis 90.5 0.75 1.6E-05 41.3 6.4 43 110-154 24-66 (212)
58 PF03721 UDPG_MGDP_dh_N: UDP-g 90.5 0.83 1.8E-05 40.2 6.5 77 115-209 1-85 (185)
59 cd01485 E1-1_like Ubiquitin ac 90.5 1.2 2.6E-05 39.5 7.5 146 110-271 15-190 (198)
60 PF00899 ThiF: ThiF family; I 90.4 1.3 2.8E-05 36.3 7.2 107 114-239 2-126 (135)
61 PRK00066 ldh L-lactate dehydro 90.4 4.1 9E-05 38.8 11.5 36 113-149 5-40 (315)
62 PLN00106 malate dehydrogenase 90.3 3 6.5E-05 40.1 10.6 83 112-216 16-102 (323)
63 PRK00414 gmhA phosphoheptose i 90.2 7 0.00015 34.5 12.1 61 193-271 104-164 (192)
64 TIGR02355 moeB molybdopterin s 90.0 0.92 2E-05 41.6 6.6 46 109-156 19-64 (240)
65 cd01488 Uba3_RUB Ubiquitin act 90.0 0.83 1.8E-05 43.5 6.4 38 116-155 1-38 (291)
66 cd01484 E1-2_like Ubiquitin ac 89.9 0.89 1.9E-05 41.8 6.4 38 116-155 1-38 (234)
67 PRK07634 pyrroline-5-carboxyla 89.7 0.8 1.7E-05 40.8 5.8 42 113-154 3-46 (245)
68 cd05290 LDH_3 A subgroup of L- 89.7 5.1 0.00011 38.2 11.5 33 116-149 1-33 (307)
69 cd01339 LDH-like_MDH L-lactate 89.4 3 6.6E-05 38.9 9.7 33 117-151 1-33 (300)
70 PF03446 NAD_binding_2: NAD bi 89.1 0.78 1.7E-05 38.9 5.1 38 115-155 2-39 (163)
71 PLN02602 lactate dehydrogenase 89.0 1.8 3.8E-05 42.1 8.0 35 115-150 38-72 (350)
72 cd05296 GH4_P_beta_glucosidase 88.7 2.1 4.5E-05 42.6 8.4 84 115-213 1-88 (419)
73 TIGR03736 PRTRC_ThiF PRTRC sys 88.7 0.79 1.7E-05 42.6 5.1 44 112-155 9-60 (244)
74 TIGR00441 gmhA phosphoheptose 88.4 10 0.00022 32.0 11.5 46 193-241 72-117 (154)
75 cd05291 HicDH_like L-2-hydroxy 88.3 5.3 0.00012 37.5 10.6 36 116-152 2-37 (306)
76 PTZ00325 malate dehydrogenase; 88.3 4.5 9.7E-05 38.9 10.2 35 113-148 7-42 (321)
77 PF03435 Saccharop_dh: Sacchar 88.2 4.9 0.00011 38.5 10.4 95 117-235 1-96 (386)
78 PF00289 CPSase_L_chain: Carba 88.0 0.68 1.5E-05 37.8 3.8 99 115-234 3-103 (110)
79 TIGR01381 E1_like_apg7 E1-like 88.0 1 2.2E-05 47.4 6.0 43 111-155 335-377 (664)
80 cd05294 LDH-like_MDH_nadp A la 87.6 8.6 0.00019 36.4 11.5 34 115-149 1-35 (309)
81 TIGR02354 thiF_fam2 thiamine b 87.6 0.6 1.3E-05 41.6 3.5 42 110-154 17-62 (200)
82 cd00757 ThiF_MoeB_HesA_family 87.4 1.3 2.8E-05 39.8 5.7 43 110-154 17-59 (228)
83 PRK07878 molybdopterin biosynt 87.4 1.2 2.6E-05 43.6 5.8 44 110-155 38-81 (392)
84 PRK14619 NAD(P)H-dependent gly 87.3 1.2 2.6E-05 41.7 5.5 34 112-148 2-35 (308)
85 cd01337 MDH_glyoxysomal_mitoch 87.1 6.5 0.00014 37.6 10.5 34 115-149 1-35 (310)
86 cd01489 Uba2_SUMO Ubiquitin ac 87.0 2 4.3E-05 41.3 6.9 39 116-156 1-39 (312)
87 PRK07411 hypothetical protein; 86.8 1.7 3.6E-05 42.7 6.5 54 109-168 33-86 (390)
88 COG0039 Mdh Malate/lactate deh 86.7 6 0.00013 38.2 10.0 34 115-149 1-34 (313)
89 TIGR01772 MDH_euk_gproteo mala 86.5 5.7 0.00012 38.0 9.7 78 116-215 1-82 (312)
90 TIGR01759 MalateDH-SF1 malate 86.3 7.8 0.00017 37.2 10.6 36 113-148 2-42 (323)
91 PF06908 DUF1273: Protein of u 86.1 2 4.4E-05 38.0 6.0 81 190-272 31-111 (177)
92 PLN02968 Probable N-acetyl-gam 86.0 4 8.7E-05 40.1 8.6 48 103-152 27-75 (381)
93 PRK05600 thiamine biosynthesis 85.9 2.1 4.5E-05 41.8 6.5 46 108-155 35-80 (370)
94 TIGR03693 ocin_ThiF_like putat 85.8 1.5 3.3E-05 45.9 5.8 42 108-151 123-164 (637)
95 cd01492 Aos1_SUMO Ubiquitin ac 85.7 1.8 3.9E-05 38.4 5.6 145 110-272 17-190 (197)
96 PRK15116 sulfur acceptor prote 85.7 2.5 5.4E-05 39.8 6.7 45 109-155 25-69 (268)
97 PRK04148 hypothetical protein; 85.7 2.1 4.5E-05 36.5 5.6 38 114-155 17-54 (134)
98 KOG1495 Lactate dehydrogenase 85.6 7 0.00015 37.7 9.6 59 111-170 17-83 (332)
99 PRK13936 phosphoheptose isomer 85.5 24 0.00051 31.2 12.5 46 192-240 103-148 (197)
100 cd00755 YgdL_like Family of ac 85.4 1.7 3.7E-05 39.8 5.4 41 112-154 9-49 (231)
101 cd01338 MDH_choloroplast_like 85.1 9.9 0.00021 36.4 10.6 35 114-148 2-41 (322)
102 PRK11064 wecC UDP-N-acetyl-D-m 84.9 24 0.00052 34.8 13.5 39 114-155 3-41 (415)
103 cd05292 LDH_2 A subgroup of L- 84.9 3.8 8.2E-05 38.7 7.6 36 115-151 1-36 (308)
104 CHL00194 ycf39 Ycf39; Provisio 84.7 15 0.00033 33.9 11.5 32 115-149 1-33 (317)
105 PRK15076 alpha-galactosidase; 84.6 3.3 7.1E-05 41.3 7.4 83 115-212 2-87 (431)
106 PRK00048 dihydrodipicolinate r 84.5 9.8 0.00021 35.0 10.0 34 115-150 2-37 (257)
107 PF03807 F420_oxidored: NADP o 84.4 2.1 4.5E-05 32.5 4.7 40 116-155 1-41 (96)
108 PRK05442 malate dehydrogenase; 84.2 10 0.00022 36.5 10.3 36 113-148 3-43 (326)
109 cd01487 E1_ThiF_like E1_ThiF_l 84.2 3.2 7E-05 36.0 6.3 34 116-151 1-34 (174)
110 PRK06545 prephenate dehydrogen 83.6 1.6 3.5E-05 42.0 4.6 37 116-153 2-38 (359)
111 cd01491 Ube1_repeat1 Ubiquitin 83.6 2.5 5.4E-05 40.1 5.8 44 110-155 15-58 (286)
112 PRK09496 trkA potassium transp 83.6 7.5 0.00016 37.7 9.2 103 112-241 229-334 (453)
113 PRK13937 phosphoheptose isomer 83.4 30 0.00065 30.2 12.1 103 112-241 36-144 (188)
114 cd00300 LDH_like L-lactate deh 83.1 12 0.00026 35.2 10.1 33 117-150 1-33 (300)
115 PLN02353 probable UDP-glucose 83.0 3.8 8.3E-05 41.4 7.2 41 115-156 2-42 (473)
116 cd01075 NAD_bind_Leu_Phe_Val_D 83.0 2.6 5.6E-05 37.4 5.3 43 110-155 24-66 (200)
117 PRK13302 putative L-aspartate 82.8 38 0.00082 31.5 13.2 40 112-152 4-44 (271)
118 cd01490 Ube1_repeat2 Ubiquitin 82.7 3.8 8.3E-05 41.2 6.9 40 116-155 1-43 (435)
119 PRK13938 phosphoheptose isomer 82.4 36 0.00078 30.4 13.3 102 112-240 43-150 (196)
120 PRK04207 glyceraldehyde-3-phos 82.2 8.1 0.00018 37.2 8.8 32 115-148 2-33 (341)
121 PRK08762 molybdopterin biosynt 82.2 3 6.6E-05 40.4 5.9 43 110-154 131-173 (376)
122 TIGR03026 NDP-sugDHase nucleot 82.2 6.8 0.00015 38.2 8.4 38 115-155 1-38 (411)
123 cd05297 GH4_alpha_glucosidase_ 82.1 5.2 0.00011 39.6 7.6 83 115-212 1-86 (423)
124 TIGR01763 MalateDH_bact malate 81.9 20 0.00044 33.9 11.2 33 115-149 2-34 (305)
125 PLN00141 Tic62-NAD(P)-related 81.9 23 0.0005 31.5 11.1 39 112-153 15-54 (251)
126 TIGR01757 Malate-DH_plant mala 81.8 11 0.00024 37.4 9.6 28 113-140 43-71 (387)
127 PRK02705 murD UDP-N-acetylmura 81.7 7.1 0.00015 38.2 8.4 31 115-148 1-31 (459)
128 PF02056 Glyco_hydro_4: Family 81.6 5.7 0.00012 35.5 7.0 40 116-155 1-43 (183)
129 PRK14851 hypothetical protein; 81.5 3.4 7.4E-05 43.7 6.4 45 109-155 38-82 (679)
130 PRK10669 putative cation:proto 81.5 4.9 0.00011 40.8 7.4 40 114-156 417-456 (558)
131 PTZ00345 glycerol-3-phosphate 81.4 5.5 0.00012 39.0 7.4 38 112-149 9-52 (365)
132 PRK00421 murC UDP-N-acetylmura 81.3 13 0.00028 36.7 10.1 34 112-148 5-39 (461)
133 PRK08818 prephenate dehydrogen 81.3 2.5 5.5E-05 41.5 5.0 34 113-148 3-37 (370)
134 PF01262 AlaDh_PNT_C: Alanine 81.1 2.3 4.9E-05 36.4 4.2 110 111-230 17-130 (168)
135 PRK14106 murD UDP-N-acetylmura 81.1 11 0.00023 36.8 9.3 35 112-149 3-37 (450)
136 PRK08507 prephenate dehydrogen 81.0 2.7 5.9E-05 38.5 4.9 39 115-154 1-39 (275)
137 TIGR02853 spore_dpaA dipicolin 81.0 4.6 0.0001 38.0 6.5 41 111-154 148-188 (287)
138 PLN02688 pyrroline-5-carboxyla 80.4 2.8 6.1E-05 37.9 4.8 40 115-154 1-42 (266)
139 TIGR01758 MDH_euk_cyt malate d 80.4 14 0.00031 35.4 9.7 34 116-149 1-39 (324)
140 COG1023 Gnd Predicted 6-phosph 80.3 2.3 5E-05 40.3 4.1 36 115-153 1-36 (300)
141 PRK13940 glutamyl-tRNA reducta 80.2 6.7 0.00015 39.0 7.6 41 110-152 177-217 (414)
142 cd01336 MDH_cytoplasmic_cytoso 80.2 3.4 7.3E-05 39.6 5.4 88 114-216 2-94 (325)
143 PLN02695 GDP-D-mannose-3',5'-e 80.1 21 0.00045 34.2 10.8 95 113-231 20-129 (370)
144 PRK07417 arogenate dehydrogena 80.0 3.4 7.4E-05 38.1 5.2 38 115-155 1-38 (279)
145 PLN02735 carbamoyl-phosphate s 80.0 7.4 0.00016 43.4 8.6 41 109-152 18-69 (1102)
146 PRK12549 shikimate 5-dehydroge 79.8 5.9 0.00013 37.1 6.8 40 112-153 125-164 (284)
147 PLN00112 malate dehydrogenase 79.7 13 0.00029 37.5 9.6 40 112-151 98-144 (444)
148 PRK13304 L-aspartate dehydroge 79.6 8.7 0.00019 35.5 7.7 39 115-154 2-41 (265)
149 TIGR03649 ergot_EASG ergot alk 79.5 27 0.00059 31.4 10.8 32 116-150 1-33 (285)
150 cd05197 GH4_glycoside_hydrolas 79.4 8.9 0.00019 38.3 8.2 83 115-212 1-86 (425)
151 COG1179 Dinucleotide-utilizing 79.0 2.5 5.4E-05 39.9 3.9 31 110-140 26-56 (263)
152 TIGR03589 PseB UDP-N-acetylglu 79.0 52 0.0011 30.7 12.9 80 113-212 3-86 (324)
153 PRK02006 murD UDP-N-acetylmura 78.9 15 0.00032 36.7 9.7 33 113-148 6-38 (498)
154 PF01210 NAD_Gly3P_dh_N: NAD-d 78.7 11 0.00025 31.7 7.7 35 116-153 1-35 (157)
155 PRK09424 pntA NAD(P) transhydr 78.7 9.9 0.00022 39.0 8.5 42 111-155 162-203 (509)
156 PLN03209 translocon at the inn 78.5 22 0.00048 37.1 11.0 41 110-153 76-117 (576)
157 PRK03659 glutathione-regulated 77.8 5.5 0.00012 41.2 6.4 95 114-237 400-498 (601)
158 cd00704 MDH Malate dehydrogena 77.7 11 0.00024 36.1 8.1 87 115-216 1-92 (323)
159 PF01073 3Beta_HSD: 3-beta hyd 77.7 14 0.00031 34.2 8.7 94 121-234 5-111 (280)
160 cd01080 NAD_bind_m-THF_DH_Cycl 77.3 7.8 0.00017 33.8 6.4 36 110-148 40-76 (168)
161 PRK12480 D-lactate dehydrogena 77.2 6.4 0.00014 37.8 6.3 38 110-150 142-179 (330)
162 PF13380 CoA_binding_2: CoA bi 76.7 39 0.00084 27.4 10.4 97 116-235 2-107 (116)
163 PRK12829 short chain dehydroge 76.7 14 0.0003 32.4 7.9 88 112-213 9-99 (264)
164 COG4185 Uncharacterized protei 76.5 43 0.00092 30.2 10.7 132 119-274 7-159 (187)
165 cd05311 NAD_bind_2_malic_enz N 75.9 4.3 9.3E-05 36.8 4.5 38 112-149 23-60 (226)
166 PRK08300 acetaldehyde dehydrog 75.7 7.9 0.00017 37.2 6.4 94 112-236 2-100 (302)
167 TIGR01082 murC UDP-N-acetylmur 75.7 22 0.00048 34.9 9.8 30 116-148 1-31 (448)
168 TIGR00872 gnd_rel 6-phosphoglu 75.2 4.8 0.0001 37.6 4.8 38 115-155 1-38 (298)
169 TIGR00518 alaDH alanine dehydr 75.0 11 0.00023 36.8 7.2 40 112-154 165-204 (370)
170 cd01065 NAD_bind_Shikimate_DH 74.9 6.3 0.00014 32.3 4.9 41 112-154 17-57 (155)
171 COG0476 ThiF Dinucleotide-util 74.8 11 0.00025 34.1 7.0 54 109-168 25-78 (254)
172 PRK10538 malonic semialdehyde 74.8 17 0.00036 32.0 7.9 83 115-211 1-85 (248)
173 PRK14852 hypothetical protein; 74.6 6.8 0.00015 43.3 6.3 44 110-155 328-371 (989)
174 PRK03562 glutathione-regulated 74.5 8.1 0.00018 40.2 6.7 87 114-229 400-488 (621)
175 PRK07877 hypothetical protein; 74.2 8.3 0.00018 41.2 6.7 107 109-235 102-226 (722)
176 TIGR03466 HpnA hopanoid-associ 74.2 55 0.0012 29.5 11.3 73 115-210 1-74 (328)
177 PRK08605 D-lactate dehydrogena 73.7 5.9 0.00013 37.9 5.1 38 110-149 142-179 (332)
178 PRK06182 short chain dehydroge 73.5 21 0.00046 31.8 8.4 82 114-211 3-85 (273)
179 PRK08125 bifunctional UDP-gluc 73.4 29 0.00062 36.1 10.3 92 102-213 303-395 (660)
180 PRK06718 precorrin-2 dehydroge 73.3 14 0.0003 32.9 7.1 36 111-149 7-42 (202)
181 COG1748 LYS9 Saccharopine dehy 73.3 9.9 0.00022 37.8 6.6 40 114-155 1-40 (389)
182 PRK11908 NAD-dependent epimera 73.0 38 0.00082 31.6 10.2 34 115-150 2-36 (347)
183 PRK12491 pyrroline-5-carboxyla 73.0 6.1 0.00013 36.8 4.8 42 114-155 2-44 (272)
184 PRK07178 pyruvate carboxylase 72.8 14 0.0003 36.9 7.6 75 115-206 3-79 (472)
185 PRK11880 pyrroline-5-carboxyla 72.7 6.2 0.00014 35.7 4.8 41 114-154 2-42 (267)
186 TIGR01918 various_sel_PB selen 72.4 16 0.00035 36.9 7.9 78 189-268 323-429 (431)
187 PF02737 3HCDH_N: 3-hydroxyacy 72.3 6.2 0.00013 34.4 4.5 37 116-155 1-37 (180)
188 PRK07530 3-hydroxybutyryl-CoA 72.2 6.5 0.00014 36.3 4.9 39 114-155 4-42 (292)
189 cd05006 SIS_GmhA Phosphoheptos 72.0 62 0.0013 27.6 11.3 43 196-241 97-139 (177)
190 PRK13660 hypothetical protein; 72.0 17 0.00038 32.4 7.3 77 191-272 32-111 (182)
191 cd05015 SIS_PGI_1 Phosphogluco 71.9 60 0.0013 27.5 10.4 38 115-152 21-62 (158)
192 COG1712 Predicted dinucleotide 71.9 17 0.00038 34.1 7.4 40 115-155 1-41 (255)
193 PRK06057 short chain dehydroge 71.7 21 0.00045 31.4 7.8 85 112-211 5-90 (255)
194 TIGR00514 accC acetyl-CoA carb 71.3 24 0.00052 34.8 8.8 51 115-168 3-53 (449)
195 PRK01710 murD UDP-N-acetylmura 71.2 23 0.0005 35.0 8.7 33 114-149 14-46 (458)
196 PRK12490 6-phosphogluconate de 71.2 7 0.00015 36.5 4.9 37 115-154 1-37 (299)
197 COG0287 TyrA Prephenate dehydr 70.8 8.3 0.00018 36.4 5.2 40 114-154 3-42 (279)
198 PRK09599 6-phosphogluconate de 70.8 7.2 0.00016 36.4 4.8 37 115-154 1-37 (301)
199 PRK05294 carB carbamoyl phosph 70.3 21 0.00045 39.5 8.9 37 113-152 6-53 (1066)
200 TIGR01850 argC N-acetyl-gamma- 70.3 32 0.00069 33.2 9.2 34 115-150 1-36 (346)
201 PRK12815 carB carbamoyl phosph 70.2 27 0.0006 38.7 9.8 39 112-153 5-54 (1068)
202 TIGR01771 L-LDH-NAD L-lactate 70.1 32 0.0007 32.5 9.1 29 119-148 1-29 (299)
203 PRK07679 pyrroline-5-carboxyla 70.1 6.3 0.00014 36.3 4.2 36 113-148 2-38 (279)
204 PF04816 DUF633: Family of unk 69.7 1.6 3.5E-05 39.3 0.2 65 201-277 67-134 (205)
205 TIGR01408 Ube1 ubiquitin-activ 69.7 13 0.00028 41.3 7.1 45 112-156 417-464 (1008)
206 PTZ00245 ubiquitin activating 69.3 17 0.00037 34.8 6.9 42 110-153 22-63 (287)
207 PRK00094 gpsA NAD(P)H-dependen 69.2 8.1 0.00018 35.6 4.8 37 115-154 2-38 (325)
208 PRK05653 fabG 3-ketoacyl-(acyl 69.1 43 0.00093 28.6 9.0 87 113-213 4-95 (246)
209 COG0279 GmhA Phosphoheptose is 69.1 79 0.0017 28.4 10.6 98 112-237 39-143 (176)
210 PRK05441 murQ N-acetylmuramic 68.7 96 0.0021 29.4 12.0 52 198-270 129-183 (299)
211 PLN00203 glutamyl-tRNA reducta 68.4 46 0.001 34.2 10.4 42 112-155 264-305 (519)
212 PLN02545 3-hydroxybutyryl-CoA 68.4 8.4 0.00018 35.6 4.7 37 115-154 5-41 (295)
213 PRK06130 3-hydroxybutyryl-CoA 68.1 8 0.00017 35.9 4.5 38 115-155 5-42 (311)
214 PLN02206 UDP-glucuronate decar 68.1 53 0.0011 32.7 10.5 35 111-148 116-151 (442)
215 PRK04663 murD UDP-N-acetylmura 68.1 26 0.00057 34.4 8.3 33 115-148 8-40 (438)
216 PRK07326 short chain dehydroge 67.8 29 0.00063 29.9 7.7 84 114-211 6-93 (237)
217 COG0451 WcaG Nucleoside-diphos 67.6 52 0.0011 29.4 9.6 79 115-217 1-81 (314)
218 PRK07825 short chain dehydroge 67.5 30 0.00064 30.8 7.9 85 113-212 4-90 (273)
219 PRK11559 garR tartronate semia 67.5 9 0.0002 35.2 4.7 36 115-153 3-38 (296)
220 PRK06476 pyrroline-5-carboxyla 67.2 8.8 0.00019 34.8 4.5 40 115-154 1-40 (258)
221 cd05213 NAD_bind_Glutamyl_tRNA 67.1 23 0.00051 33.4 7.5 40 112-153 176-215 (311)
222 KOG2530 Members of tubulin/Fts 67.0 20 0.00044 36.5 7.2 82 188-270 188-283 (483)
223 PTZ00431 pyrroline carboxylate 67.0 8.4 0.00018 35.3 4.3 38 113-150 2-40 (260)
224 PRK07774 short chain dehydroge 66.6 49 0.0011 28.7 9.0 87 113-213 5-96 (250)
225 PRK07819 3-hydroxybutyryl-CoA 66.1 9.5 0.00021 35.6 4.6 37 116-155 7-43 (286)
226 PF01118 Semialdhyde_dh: Semia 65.8 11 0.00023 30.4 4.3 93 116-236 1-96 (121)
227 PRK05866 short chain dehydroge 65.3 57 0.0012 29.9 9.6 88 112-213 38-130 (293)
228 PLN02819 lysine-ketoglutarate 65.2 69 0.0015 35.9 11.5 95 114-236 569-678 (1042)
229 PLN02256 arogenate dehydrogena 65.1 11 0.00024 35.8 4.9 35 112-149 34-68 (304)
230 PRK06841 short chain dehydroge 65.1 43 0.00093 29.2 8.4 87 112-212 13-101 (255)
231 PRK09260 3-hydroxybutyryl-CoA 65.0 9.3 0.0002 35.3 4.3 38 115-155 2-39 (288)
232 PF02254 TrkA_N: TrkA-N domain 64.9 13 0.00028 29.0 4.5 92 117-237 1-96 (116)
233 COG0794 GutQ Predicted sugar p 64.8 56 0.0012 29.8 9.1 49 202-271 88-139 (202)
234 PLN02427 UDP-apiose/xylose syn 64.8 36 0.00077 32.4 8.3 34 114-149 14-48 (386)
235 PRK07680 late competence prote 64.6 11 0.00023 34.6 4.5 40 115-154 1-41 (273)
236 PRK07502 cyclohexadienyl dehyd 64.6 13 0.00028 34.6 5.2 40 115-155 7-46 (307)
237 TIGR01369 CPSaseII_lrg carbamo 64.5 35 0.00076 37.8 9.2 39 112-153 4-53 (1050)
238 COG0796 MurI Glutamate racemas 64.5 1.3E+02 0.0027 28.7 11.7 97 112-241 3-100 (269)
239 PRK06035 3-hydroxyacyl-CoA deh 64.3 11 0.00024 34.8 4.6 37 115-154 4-40 (291)
240 PF01408 GFO_IDH_MocA: Oxidore 64.3 13 0.00028 29.0 4.4 94 115-243 1-97 (120)
241 PRK14573 bifunctional D-alanyl 64.1 38 0.00082 36.2 9.1 30 116-148 6-36 (809)
242 TIGR02717 AcCoA-syn-alpha acet 63.8 1.3E+02 0.0029 30.0 12.4 39 112-151 5-47 (447)
243 PRK07523 gluconate 5-dehydroge 63.7 28 0.00061 30.6 6.9 87 112-212 8-99 (255)
244 PRK11199 tyrA bifunctional cho 63.7 17 0.00038 35.3 6.1 33 113-148 97-130 (374)
245 PRK06180 short chain dehydroge 63.6 61 0.0013 29.1 9.2 84 114-211 4-89 (277)
246 KOG0409 Predicted dehydrogenas 63.5 19 0.00042 35.0 6.2 28 110-137 31-58 (327)
247 PRK12826 3-ketoacyl-(acyl-carr 63.5 77 0.0017 27.2 9.6 87 113-213 5-96 (251)
248 PRK14874 aspartate-semialdehyd 63.4 49 0.0011 31.6 9.0 35 115-149 2-37 (334)
249 TIGR01408 Ube1 ubiquitin-activ 63.2 13 0.00029 41.2 5.6 54 110-169 20-73 (1008)
250 PRK07831 short chain dehydroge 63.0 90 0.002 27.5 10.1 87 112-212 15-109 (262)
251 PTZ00489 glutamate 5-kinase; P 63.0 60 0.0013 30.4 9.3 36 227-262 92-127 (264)
252 PRK05671 aspartate-semialdehyd 62.9 60 0.0013 31.4 9.5 35 115-149 5-40 (336)
253 PRK06129 3-hydroxyacyl-CoA deh 62.7 12 0.00026 35.0 4.6 37 115-154 3-39 (308)
254 PRK14618 NAD(P)H-dependent gly 62.6 13 0.00027 35.0 4.7 37 114-153 4-40 (328)
255 PRK06522 2-dehydropantoate 2-r 62.5 13 0.00028 33.9 4.7 36 115-153 1-36 (304)
256 PRK06179 short chain dehydroge 62.4 61 0.0013 28.7 8.9 81 114-212 4-85 (270)
257 cd05007 SIS_Etherase N-acetylm 62.3 1.3E+02 0.0029 27.8 11.6 38 198-241 116-156 (257)
258 PRK15181 Vi polysaccharide bio 62.2 81 0.0018 29.6 10.1 33 113-148 14-47 (348)
259 cd01493 APPBP1_RUB Ubiquitin a 62.0 24 0.00052 35.4 6.8 37 112-150 18-54 (425)
260 PRK12429 3-hydroxybutyrate deh 61.7 62 0.0013 28.1 8.7 84 114-211 4-92 (258)
261 PRK06523 short chain dehydroge 61.5 97 0.0021 27.1 10.0 80 112-211 7-88 (260)
262 PRK06198 short chain dehydroge 61.4 61 0.0013 28.4 8.6 86 112-211 4-95 (260)
263 PRK08462 biotin carboxylase; V 61.2 31 0.00067 33.8 7.4 51 115-168 5-55 (445)
264 PLN02657 3,8-divinyl protochlo 61.1 1.6E+02 0.0036 28.5 14.5 37 110-149 56-93 (390)
265 PRK08293 3-hydroxybutyryl-CoA 61.0 13 0.00028 34.3 4.5 38 115-155 4-41 (287)
266 TIGR01505 tartro_sem_red 2-hyd 61.0 14 0.00029 34.1 4.6 36 116-154 1-36 (291)
267 COG1486 CelF Alpha-galactosida 61.0 48 0.001 33.7 8.7 43 113-155 2-47 (442)
268 PLN02712 arogenate dehydrogena 60.8 14 0.0003 39.1 5.1 38 109-149 47-84 (667)
269 PLN03139 formate dehydrogenase 60.8 17 0.00036 36.0 5.4 36 110-148 195-230 (386)
270 TIGR01832 kduD 2-deoxy-D-gluco 60.7 67 0.0015 27.9 8.7 87 112-212 3-92 (248)
271 PRK06949 short chain dehydroge 60.6 51 0.0011 28.7 8.0 86 112-211 7-97 (258)
272 PRK07074 short chain dehydroge 60.0 71 0.0015 27.9 8.8 84 115-212 3-89 (257)
273 PRK06194 hypothetical protein; 59.8 52 0.0011 29.4 8.1 87 113-213 5-96 (287)
274 PF00205 TPP_enzyme_M: Thiamin 59.6 7.5 0.00016 31.7 2.4 79 192-271 2-86 (137)
275 PLN02253 xanthoxin dehydrogena 59.4 1.1E+02 0.0023 27.3 10.0 89 111-213 15-107 (280)
276 PRK15461 NADH-dependent gamma- 59.3 16 0.00035 34.0 4.8 37 115-154 2-38 (296)
277 PRK08040 putative semialdehyde 59.2 28 0.0006 33.8 6.5 37 113-149 3-40 (336)
278 COG0373 HemA Glutamyl-tRNA red 59.2 36 0.00077 34.3 7.4 65 110-206 174-244 (414)
279 PF13580 SIS_2: SIS domain; PD 59.2 1E+02 0.0022 25.4 9.2 41 191-237 92-137 (138)
280 PRK03868 glucose-6-phosphate i 59.1 80 0.0017 31.5 9.9 41 115-155 59-103 (410)
281 COG0702 Predicted nucleoside-d 59.1 57 0.0012 28.5 8.1 74 115-212 1-75 (275)
282 PRK05808 3-hydroxybutyryl-CoA 59.0 18 0.00038 33.3 5.0 37 115-154 4-40 (282)
283 PRK12936 3-ketoacyl-(acyl-carr 59.0 55 0.0012 28.1 7.8 86 113-212 5-92 (245)
284 TIGR01214 rmlD dTDP-4-dehydror 58.8 60 0.0013 28.9 8.3 30 116-148 1-31 (287)
285 PRK12384 sorbitol-6-phosphate 58.7 49 0.0011 29.0 7.6 85 115-213 3-94 (259)
286 PLN02383 aspartate semialdehyd 58.5 74 0.0016 30.9 9.3 38 111-148 4-42 (344)
287 PRK15059 tartronate semialdehy 58.4 15 0.00032 34.4 4.4 32 115-149 1-32 (292)
288 PRK08217 fabG 3-ketoacyl-(acyl 58.1 79 0.0017 27.2 8.7 84 113-210 4-92 (253)
289 PF01113 DapB_N: Dihydrodipico 57.7 13 0.00028 30.4 3.4 99 115-241 1-101 (124)
290 cd00758 MoCF_BD MoCF_BD: molyb 57.6 16 0.00035 30.1 4.0 37 189-229 47-83 (133)
291 PRK08654 pyruvate carboxylase 57.6 48 0.001 33.7 8.2 51 115-168 3-53 (499)
292 PLN02662 cinnamyl-alcohol dehy 57.5 55 0.0012 29.7 7.9 33 114-149 4-37 (322)
293 PRK02318 mannitol-1-phosphate 57.3 42 0.00092 32.6 7.5 100 115-228 1-106 (381)
294 PRK07067 sorbitol dehydrogenas 57.2 68 0.0015 28.1 8.2 84 114-211 6-91 (257)
295 PRK05867 short chain dehydroge 57.1 85 0.0018 27.5 8.8 86 112-211 7-97 (253)
296 PRK10675 UDP-galactose-4-epime 57.1 97 0.0021 28.4 9.5 30 115-147 1-31 (338)
297 TIGR01915 npdG NADPH-dependent 57.0 20 0.00043 31.8 4.8 36 115-153 1-37 (219)
298 PRK12939 short chain dehydroge 57.0 98 0.0021 26.6 9.1 85 113-211 6-95 (250)
299 PRK12862 malic enzyme; Reviewe 56.8 31 0.00067 37.2 6.9 39 111-149 190-228 (763)
300 PF10649 DUF2478: Protein of u 56.8 93 0.002 27.3 8.8 73 160-237 55-130 (159)
301 PRK06249 2-dehydropantoate 2-r 56.8 14 0.00031 34.5 4.0 41 112-154 3-43 (313)
302 TIGR01181 dTDP_gluc_dehyt dTDP 56.4 44 0.00094 29.9 7.0 32 116-148 1-33 (317)
303 COG4962 CpaF Flp pilus assembl 56.4 17 0.00037 35.8 4.6 59 211-269 179-255 (355)
304 cd01078 NAD_bind_H4MPT_DH NADP 56.4 75 0.0016 27.3 8.2 39 112-153 26-65 (194)
305 PRK05875 short chain dehydroge 56.3 58 0.0013 28.9 7.7 39 112-153 5-44 (276)
306 PRK06111 acetyl-CoA carboxylas 56.3 64 0.0014 31.4 8.6 35 115-152 3-37 (450)
307 PRK09186 flagellin modificatio 56.1 93 0.002 27.1 8.9 37 114-153 4-41 (256)
308 PRK11337 DNA-binding transcrip 56.0 1.4E+02 0.003 27.4 10.4 54 200-271 187-240 (292)
309 PRK11543 gutQ D-arabinose 5-ph 56.0 1.7E+02 0.0036 27.2 11.0 52 202-271 91-142 (321)
310 PRK09242 tropinone reductase; 55.9 67 0.0015 28.2 8.0 85 112-210 7-98 (257)
311 COG1004 Ugd Predicted UDP-gluc 55.8 61 0.0013 32.7 8.3 96 115-228 1-105 (414)
312 TIGR00177 molyb_syn molybdenum 55.8 20 0.00044 30.0 4.4 37 189-229 55-91 (144)
313 PLN02260 probable rhamnose bio 55.7 1.7E+02 0.0036 30.3 11.9 111 109-239 1-132 (668)
314 TIGR01142 purT phosphoribosylg 55.7 28 0.0006 33.0 5.8 34 116-152 1-34 (380)
315 PRK12439 NAD(P)H-dependent gly 55.6 1.3E+02 0.0029 28.6 10.5 32 114-147 7-38 (341)
316 PRK08591 acetyl-CoA carboxylas 55.5 56 0.0012 32.0 8.1 51 115-168 3-53 (451)
317 PRK08213 gluconate 5-dehydroge 55.5 1E+02 0.0022 27.1 9.0 86 112-211 10-100 (259)
318 PRK05865 hypothetical protein; 55.4 77 0.0017 34.7 9.7 31 115-148 1-32 (854)
319 PRK12320 hypothetical protein; 55.3 76 0.0017 34.0 9.5 30 115-147 1-31 (699)
320 PF02826 2-Hacid_dh_C: D-isome 55.3 24 0.00052 30.3 4.9 42 108-152 30-71 (178)
321 PRK06500 short chain dehydroge 55.2 87 0.0019 27.0 8.5 86 113-212 5-92 (249)
322 KOG2337 Ubiquitin activating E 55.2 25 0.00055 36.7 5.7 105 112-228 338-475 (669)
323 COG2910 Putative NADH-flavin r 55.0 1.7E+02 0.0038 26.9 13.4 24 115-138 1-25 (211)
324 KOG0685 Flavin-containing amin 54.8 13 0.00028 38.1 3.6 63 114-180 21-85 (498)
325 PF00004 AAA: ATPase family as 54.7 68 0.0015 24.7 7.0 62 211-272 4-67 (132)
326 PRK00683 murD UDP-N-acetylmura 54.6 18 0.00039 35.3 4.5 34 115-151 4-37 (418)
327 COG2084 MmsB 3-hydroxyisobutyr 54.6 19 0.00042 34.3 4.5 35 115-152 1-35 (286)
328 PRK08263 short chain dehydroge 54.4 94 0.002 27.7 8.8 84 114-211 3-88 (275)
329 PRK05717 oxidoreductase; Valid 54.4 1.1E+02 0.0024 26.8 9.1 85 114-212 10-96 (255)
330 PRK07024 short chain dehydroge 54.3 82 0.0018 27.8 8.3 85 115-213 3-91 (257)
331 COG0771 MurD UDP-N-acetylmuram 54.3 20 0.00042 36.4 4.7 38 112-152 5-42 (448)
332 PRK07232 bifunctional malic en 54.2 26 0.00057 37.8 5.9 40 110-149 181-220 (752)
333 PRK08265 short chain dehydroge 53.9 76 0.0016 28.2 8.1 86 112-211 4-91 (261)
334 PLN02214 cinnamoyl-CoA reducta 53.8 76 0.0016 29.8 8.4 31 113-146 9-40 (342)
335 PTZ00142 6-phosphogluconate de 53.7 22 0.00048 36.0 5.0 36 115-153 2-37 (470)
336 KOG2336 Molybdopterin biosynth 53.7 1.8E+02 0.004 28.6 10.8 126 115-260 83-211 (422)
337 PRK11544 hycI hydrogenase 3 ma 53.7 22 0.00047 30.5 4.3 39 115-153 1-46 (156)
338 PLN02251 pyrophosphate-depende 53.6 2.4E+02 0.0051 29.7 12.5 47 189-242 177-228 (568)
339 PRK05429 gamma-glutamyl kinase 53.5 1E+02 0.0022 30.2 9.4 39 224-262 93-131 (372)
340 PLN02350 phosphogluconate dehy 53.5 20 0.00044 36.6 4.7 39 112-153 4-42 (493)
341 TIGR03325 BphB_TodD cis-2,3-di 53.4 1.2E+02 0.0026 26.7 9.3 85 113-211 4-90 (262)
342 PRK00436 argC N-acetyl-gamma-g 53.4 49 0.0011 31.8 7.1 31 115-147 3-34 (343)
343 PRK15057 UDP-glucose 6-dehydro 53.3 18 0.00039 35.5 4.2 37 115-155 1-37 (388)
344 PRK05784 phosphoribosylamine-- 53.3 1.2E+02 0.0025 31.0 10.1 33 115-148 1-33 (486)
345 PRK08220 2,3-dihydroxybenzoate 53.2 1.1E+02 0.0023 26.6 8.8 79 112-210 6-86 (252)
346 PRK07531 bifunctional 3-hydrox 53.0 21 0.00046 36.0 4.8 37 115-154 5-41 (495)
347 TIGR01327 PGDH D-3-phosphoglyc 53.0 25 0.00054 35.9 5.3 36 110-148 134-169 (525)
348 PRK05650 short chain dehydroge 52.8 1E+02 0.0022 27.4 8.7 84 115-212 1-89 (270)
349 PF00670 AdoHcyase_NAD: S-aden 52.7 30 0.00064 30.5 5.1 40 112-154 21-60 (162)
350 PTZ00188 adrenodoxin reductase 52.7 62 0.0013 33.4 8.0 24 113-136 38-61 (506)
351 PRK05472 redox-sensing transcr 52.5 1.2E+02 0.0027 26.7 9.2 87 113-232 83-172 (213)
352 cd05191 NAD_bind_amino_acid_DH 52.4 24 0.00052 26.7 4.0 35 112-148 21-55 (86)
353 PRK08306 dipicolinate synthase 52.3 29 0.00062 32.7 5.3 41 111-154 149-189 (296)
354 TIGR01296 asd_B aspartate-semi 52.3 69 0.0015 30.8 8.0 88 116-234 1-89 (339)
355 PRK07097 gluconate 5-dehydroge 52.3 1.1E+02 0.0024 27.1 8.8 87 112-212 8-99 (265)
356 TIGR02279 PaaC-3OHAcCoADH 3-hy 52.3 21 0.00046 36.3 4.7 38 115-155 6-43 (503)
357 PRK07066 3-hydroxybutyryl-CoA 52.2 24 0.00051 34.0 4.7 37 115-154 8-44 (321)
358 PRK15182 Vi polysaccharide bio 52.2 26 0.00056 34.9 5.2 41 112-156 4-44 (425)
359 TIGR01917 gly_red_sel_B glycin 52.2 57 0.0012 33.1 7.5 77 190-268 324-429 (431)
360 PRK12861 malic enzyme; Reviewe 52.2 30 0.00065 37.4 5.9 39 111-149 186-224 (764)
361 PLN02166 dTDP-glucose 4,6-dehy 52.1 75 0.0016 31.5 8.4 32 114-148 120-152 (436)
362 TIGR01027 proB glutamate 5-kin 52.1 1.4E+02 0.0031 29.0 10.2 39 224-262 85-123 (363)
363 PRK12828 short chain dehydroge 52.0 90 0.0019 26.5 8.0 85 113-211 6-93 (239)
364 COG4015 Predicted dinucleotide 51.9 78 0.0017 28.7 7.5 37 112-148 16-53 (217)
365 PRK08268 3-hydroxy-acyl-CoA de 51.8 20 0.00044 36.5 4.4 38 115-155 8-45 (507)
366 PRK07806 short chain dehydroge 51.6 1.6E+02 0.0034 25.5 9.5 31 113-146 5-36 (248)
367 smart00846 Gp_dh_N Glyceraldeh 51.4 21 0.00045 30.5 3.8 38 115-154 1-40 (149)
368 PF02401 LYTB: LytB protein; 51.1 52 0.0011 31.3 6.8 47 186-236 195-241 (281)
369 PRK05993 short chain dehydroge 50.8 94 0.002 27.9 8.2 38 115-155 5-43 (277)
370 PLN00198 anthocyanidin reducta 50.7 72 0.0016 29.5 7.6 35 111-148 6-41 (338)
371 PLN02712 arogenate dehydrogena 50.6 24 0.00052 37.3 4.9 36 112-150 367-402 (667)
372 PRK07231 fabG 3-ketoacyl-(acyl 50.5 95 0.0021 26.7 8.0 87 113-213 4-94 (251)
373 PRK13303 L-aspartate dehydroge 50.5 2.1E+02 0.0045 26.4 11.4 22 115-136 2-23 (265)
374 TIGR00196 yjeF_cterm yjeF C-te 49.8 1.1E+02 0.0023 28.1 8.5 94 110-230 20-119 (272)
375 PRK08340 glucose-1-dehydrogena 49.8 97 0.0021 27.3 8.0 83 115-211 1-87 (259)
376 TIGR03376 glycerol3P_DH glycer 49.7 22 0.00049 34.4 4.2 32 116-147 1-39 (342)
377 PLN02896 cinnamyl-alcohol dehy 49.7 80 0.0017 29.5 7.8 34 113-149 9-43 (353)
378 PRK07478 short chain dehydroge 49.4 1.2E+02 0.0027 26.4 8.6 86 113-212 5-95 (254)
379 KOG1252 Cystathionine beta-syn 49.1 26 0.00057 34.6 4.5 41 112-153 210-252 (362)
380 PRK09072 short chain dehydroge 49.1 97 0.0021 27.3 7.9 39 113-154 4-43 (263)
381 PRK08463 acetyl-CoA carboxylas 49.0 79 0.0017 31.7 8.1 51 115-168 3-53 (478)
382 COG1010 CobJ Precorrin-3B meth 48.9 1.2E+02 0.0025 28.7 8.5 96 115-230 3-100 (249)
383 PF03853 YjeF_N: YjeF-related 48.9 65 0.0014 27.7 6.6 56 184-241 6-63 (169)
384 TIGR00873 gnd 6-phosphoglucona 48.7 25 0.00054 35.5 4.5 37 116-155 1-37 (467)
385 PRK06138 short chain dehydroge 48.6 92 0.002 26.9 7.6 84 114-211 5-92 (252)
386 PRK06482 short chain dehydroge 48.4 1.1E+02 0.0023 27.3 8.1 84 115-212 3-88 (276)
387 PLN02306 hydroxypyruvate reduc 48.3 23 0.0005 35.0 4.1 38 110-149 161-198 (386)
388 cd01076 NAD_bind_1_Glu_DH NAD( 48.3 35 0.00075 31.1 5.0 36 110-148 27-63 (227)
389 cd05312 NAD_bind_1_malic_enz N 48.2 23 0.00049 33.8 3.9 39 111-149 22-68 (279)
390 PLN02274 inosine-5'-monophosph 48.1 3E+02 0.0066 28.2 12.2 36 110-148 232-268 (505)
391 PRK07666 fabG 3-ketoacyl-(acyl 48.1 1.5E+02 0.0032 25.6 8.8 86 113-212 6-96 (239)
392 PRK06200 2,3-dihydroxy-2,3-dih 47.7 1.2E+02 0.0025 26.8 8.2 85 113-211 5-91 (263)
393 PRK13394 3-hydroxybutyrate deh 47.7 1.5E+02 0.0033 25.7 8.9 86 112-211 5-95 (262)
394 PRK05565 fabG 3-ketoacyl-(acyl 47.7 1.4E+02 0.0031 25.5 8.6 85 113-211 4-94 (247)
395 PRK08264 short chain dehydroge 47.6 1.7E+02 0.0037 25.1 9.1 39 113-154 5-45 (238)
396 TIGR03594 GTPase_EngA ribosome 47.6 1.5E+02 0.0033 28.6 9.6 109 116-238 1-115 (429)
397 PRK00973 glucose-6-phosphate i 47.4 2E+02 0.0044 29.1 10.7 41 115-155 72-124 (446)
398 COG0345 ProC Pyrroline-5-carbo 47.2 32 0.00069 32.5 4.7 40 115-154 2-42 (266)
399 PRK07890 short chain dehydroge 47.1 1.2E+02 0.0027 26.3 8.2 84 114-211 5-93 (258)
400 smart00852 MoCF_biosynth Proba 47.1 18 0.00039 29.6 2.7 36 189-228 46-81 (135)
401 PRK07060 short chain dehydroge 47.0 82 0.0018 27.1 7.0 40 112-154 7-47 (245)
402 COG0281 SfcA Malic enzyme [Ene 47.0 26 0.00057 35.4 4.3 39 110-148 195-233 (432)
403 PLN02989 cinnamyl-alcohol dehy 47.0 83 0.0018 28.8 7.4 31 114-147 5-36 (325)
404 cd06259 YdcF-like YdcF-like. Y 46.7 1.1E+02 0.0024 25.0 7.4 68 201-271 35-103 (150)
405 PRK06181 short chain dehydroge 46.7 1.5E+02 0.0032 26.0 8.7 84 115-212 2-90 (263)
406 PRK05708 2-dehydropantoate 2-r 46.7 24 0.00052 33.1 3.8 32 114-146 2-33 (305)
407 COG1105 FruK Fructose-1-phosph 46.5 1.4E+02 0.0031 28.9 9.1 54 180-233 109-162 (310)
408 PRK10264 hydrogenase 1 maturat 46.2 37 0.0008 30.4 4.8 41 114-154 3-52 (195)
409 PRK12367 short chain dehydroge 46.2 93 0.002 28.0 7.4 40 108-150 8-48 (245)
410 PRK12314 gamma-glutamyl kinase 46.1 2.4E+02 0.0051 26.2 10.3 79 185-264 31-134 (266)
411 PRK00141 murD UDP-N-acetylmura 46.0 32 0.00069 34.4 4.7 37 111-150 12-48 (473)
412 PRK05294 carB carbamoyl phosph 45.8 2.2E+02 0.0047 31.8 11.5 39 112-153 552-601 (1066)
413 PRK14982 acyl-ACP reductase; P 45.7 69 0.0015 31.3 6.8 43 111-155 152-196 (340)
414 PRK12921 2-dehydropantoate 2-r 45.6 33 0.00071 31.4 4.4 23 115-137 1-23 (305)
415 PRK06171 sorbitol-6-phosphate 45.5 1.6E+02 0.0034 25.9 8.7 82 112-212 7-89 (266)
416 COG0031 CysK Cysteine synthase 45.4 2.9E+02 0.0063 26.7 11.5 112 115-244 170-295 (300)
417 KOG2018 Predicted dinucleotide 45.1 27 0.00059 34.5 3.9 41 112-154 72-112 (430)
418 PLN02463 lycopene beta cyclase 45.1 41 0.00089 33.6 5.4 31 115-148 29-59 (447)
419 TIGR01369 CPSaseII_lrg carbamo 45.0 1.5E+02 0.0032 33.1 10.0 38 113-153 553-601 (1050)
420 PRK05693 short chain dehydroge 45.0 1.2E+02 0.0025 27.1 7.8 80 116-211 3-83 (274)
421 PRK06928 pyrroline-5-carboxyla 44.9 33 0.0007 31.7 4.3 34 115-148 2-36 (277)
422 PRK07454 short chain dehydroge 44.9 1.8E+02 0.0038 25.1 8.8 83 115-211 7-94 (241)
423 PRK00258 aroE shikimate 5-dehy 44.7 41 0.00089 31.1 5.0 41 112-154 121-161 (278)
424 PLN03096 glyceraldehyde-3-phos 44.6 28 0.00061 34.7 4.1 36 113-148 59-94 (395)
425 PRK06196 oxidoreductase; Provi 44.6 1E+02 0.0022 28.4 7.6 85 112-212 24-111 (315)
426 PRK08277 D-mannonate oxidoredu 44.4 1.2E+02 0.0025 27.1 7.7 86 112-211 8-98 (278)
427 PRK14072 6-phosphofructokinase 43.8 1.2E+02 0.0027 30.3 8.4 65 188-259 89-169 (416)
428 PRK08655 prephenate dehydrogen 43.7 39 0.00084 33.7 4.9 35 115-152 1-36 (437)
429 PRK06019 phosphoribosylaminoim 43.6 63 0.0014 31.1 6.2 35 115-152 3-37 (372)
430 PRK06701 short chain dehydroge 43.5 1.4E+02 0.0031 27.2 8.3 88 110-211 42-135 (290)
431 PRK08703 short chain dehydroge 43.4 2.2E+02 0.0047 24.6 9.2 89 112-212 4-99 (239)
432 PRK07063 short chain dehydroge 43.4 1.7E+02 0.0037 25.6 8.6 86 112-211 5-97 (260)
433 TIGR00507 aroE shikimate 5-deh 43.1 46 0.001 30.5 5.0 39 113-154 116-154 (270)
434 PRK08229 2-dehydropantoate 2-r 43.0 29 0.00063 32.4 3.8 32 115-149 3-34 (341)
435 PLN02358 glyceraldehyde-3-phos 42.6 34 0.00073 33.4 4.2 38 114-153 5-45 (338)
436 PRK14620 NAD(P)H-dependent gly 42.5 41 0.0009 31.4 4.7 34 115-151 1-34 (326)
437 PRK13512 coenzyme A disulfide 42.5 30 0.00066 33.9 3.9 22 115-136 2-23 (438)
438 PRK07856 short chain dehydroge 42.5 2.3E+02 0.005 24.7 9.5 80 113-211 5-86 (252)
439 TIGR02198 rfaE_dom_I rfaE bifu 42.4 2.7E+02 0.0058 25.4 11.4 46 188-233 131-176 (315)
440 PLN02686 cinnamoyl-CoA reducta 42.3 80 0.0017 30.1 6.7 35 110-147 49-84 (367)
441 TIGR00215 lpxB lipid-A-disacch 42.2 2.6E+02 0.0056 27.0 10.3 110 115-241 6-123 (385)
442 COG2074 2-phosphoglycerate kin 41.9 94 0.002 29.9 6.8 24 210-233 94-117 (299)
443 PRK01045 ispH 4-hydroxy-3-meth 41.7 76 0.0016 30.5 6.4 47 186-236 196-242 (298)
444 PRK09288 purT phosphoribosylgl 41.7 77 0.0017 30.2 6.5 36 113-151 11-46 (395)
445 PRK05557 fabG 3-ketoacyl-(acyl 41.4 2.2E+02 0.0048 24.2 9.6 86 113-212 4-95 (248)
446 COG1064 AdhP Zn-dependent alco 41.3 47 0.001 32.5 5.0 40 112-154 165-204 (339)
447 cd00887 MoeA MoeA family. Memb 41.3 65 0.0014 31.6 6.0 37 189-229 223-259 (394)
448 PRK07814 short chain dehydroge 41.3 1.7E+02 0.0037 25.8 8.3 86 112-211 8-98 (263)
449 PRK08664 aspartate-semialdehyd 41.3 2.5E+02 0.0054 26.9 9.9 36 114-151 3-39 (349)
450 COG1062 AdhC Zn-dependent alco 41.1 1.3E+02 0.0028 30.0 7.9 42 112-155 184-225 (366)
451 PLN02948 phosphoribosylaminoim 41.0 1E+02 0.0022 32.1 7.6 38 112-152 20-57 (577)
452 PRK08618 ornithine cyclodeamin 41.0 1.6E+02 0.0035 27.9 8.5 40 113-154 126-166 (325)
453 PLN02696 1-deoxy-D-xylulose-5- 40.9 2.6E+02 0.0056 28.7 10.2 43 112-155 55-100 (454)
454 cd05014 SIS_Kpsf KpsF-like pro 40.9 1.8E+02 0.0038 22.8 10.0 37 202-241 49-85 (128)
455 TIGR02632 RhaD_aldol-ADH rhamn 40.8 1.9E+02 0.0041 30.5 9.6 89 110-212 410-505 (676)
456 PRK01390 murD UDP-N-acetylmura 40.8 39 0.00085 33.2 4.4 33 113-148 8-40 (460)
457 COG1052 LdhA Lactate dehydroge 40.8 43 0.00094 32.3 4.6 36 110-148 142-177 (324)
458 PRK07832 short chain dehydroge 40.7 1.9E+02 0.0042 25.7 8.6 82 116-211 2-89 (272)
459 TIGR03206 benzo_BadH 2-hydroxy 40.5 1.9E+02 0.0042 24.8 8.4 83 114-210 3-90 (250)
460 PRK13508 tagatose-6-phosphate 40.4 1.8E+02 0.004 26.6 8.6 45 189-233 115-159 (309)
461 PRK13243 glyoxylate reductase; 40.4 39 0.00085 32.4 4.3 37 110-149 146-182 (333)
462 PRK08251 short chain dehydroge 40.4 1.4E+02 0.0031 25.8 7.5 85 115-213 3-94 (248)
463 TIGR03254 oxalate_oxc oxalyl-C 40.2 1.1E+02 0.0024 31.1 7.6 77 189-271 194-274 (554)
464 PRK06882 acetolactate synthase 40.2 1.2E+02 0.0026 30.9 7.9 77 190-271 195-281 (574)
465 COG2085 Predicted dinucleotide 39.9 48 0.001 30.5 4.5 31 115-148 2-32 (211)
466 PRK14497 putative molybdopteri 39.6 35 0.00075 35.5 4.0 37 189-229 234-270 (546)
467 COG4821 Uncharacterized protei 39.6 62 0.0013 30.1 5.1 66 198-273 102-168 (243)
468 COG0303 MoeA Molybdopterin bio 39.5 71 0.0015 31.9 6.0 39 188-230 230-269 (404)
469 PRK10466 hybD hydrogenase 2 ma 39.5 54 0.0012 28.1 4.6 39 115-153 1-48 (164)
470 PRK03806 murD UDP-N-acetylmura 39.5 47 0.001 32.4 4.7 33 113-148 5-37 (438)
471 PF03949 Malic_M: Malic enzyme 39.4 35 0.00075 32.1 3.6 38 112-149 23-68 (255)
472 PRK14096 pgi glucose-6-phospha 39.1 1.1E+02 0.0023 31.9 7.3 41 115-155 115-158 (528)
473 PRK06463 fabG 3-ketoacyl-(acyl 39.1 1.7E+02 0.0036 25.7 7.8 83 113-211 6-90 (255)
474 PLN02649 glucose-6-phosphate i 38.9 93 0.002 32.5 6.9 52 115-166 148-210 (560)
475 PRK06113 7-alpha-hydroxysteroi 38.8 2.4E+02 0.0052 24.7 8.8 87 112-212 9-100 (255)
476 PRK07576 short chain dehydroge 38.7 2.1E+02 0.0045 25.5 8.5 38 113-153 8-46 (264)
477 TIGR01777 yfcH conserved hypot 38.6 91 0.002 27.6 6.1 32 117-151 1-33 (292)
478 PRK14690 molybdopterin biosynt 38.6 50 0.0011 33.0 4.8 36 190-229 249-284 (419)
479 COG0677 WecC UDP-N-acetyl-D-ma 38.4 1.2E+02 0.0026 30.8 7.3 39 115-156 10-48 (436)
480 PTZ00314 inosine-5'-monophosph 38.3 3.2E+02 0.007 27.9 10.6 34 112-148 227-261 (495)
481 COG1058 CinA Predicted nucleot 38.3 49 0.0011 31.2 4.4 25 188-212 48-72 (255)
482 PRK05858 hypothetical protein; 38.3 1.5E+02 0.0031 30.1 8.1 78 190-271 192-271 (542)
483 PRK06186 hypothetical protein; 38.1 41 0.0009 31.1 3.9 40 197-237 50-89 (229)
484 PRK12815 carB carbamoyl phosph 37.8 1.7E+02 0.0037 32.7 9.2 92 113-234 554-658 (1068)
485 PRK05872 short chain dehydroge 37.7 2.1E+02 0.0045 26.1 8.4 87 112-212 7-97 (296)
486 PRK13301 putative L-aspartate 37.6 40 0.00087 32.0 3.7 33 115-147 3-35 (267)
487 PF07992 Pyr_redox_2: Pyridine 37.6 45 0.00098 27.9 3.8 29 116-147 1-29 (201)
488 COG0703 AroK Shikimate kinase 37.5 1.1E+02 0.0023 27.2 6.2 93 114-230 2-96 (172)
489 PRK08267 short chain dehydroge 37.5 1.6E+02 0.0035 25.8 7.5 37 116-155 3-40 (260)
490 COG0371 GldA Glycerol dehydrog 37.5 65 0.0014 31.8 5.3 51 184-241 66-119 (360)
491 PRK05732 2-octaprenyl-6-methox 37.4 44 0.00095 31.4 4.0 36 113-148 2-37 (395)
492 TIGR01921 DAP-DH diaminopimela 37.4 48 0.001 32.2 4.3 35 113-149 2-37 (324)
493 PRK06124 gluconate 5-dehydroge 37.4 2.7E+02 0.006 24.2 8.9 86 112-211 9-99 (256)
494 PRK05855 short chain dehydroge 37.1 1.7E+02 0.0036 28.8 8.2 89 110-212 311-404 (582)
495 PRK04308 murD UDP-N-acetylmura 37.0 52 0.0011 32.2 4.6 33 113-148 4-36 (445)
496 COG1893 ApbA Ketopantoate redu 36.9 39 0.00084 32.1 3.6 29 115-144 1-29 (307)
497 PRK12937 short chain dehydroge 36.9 2.7E+02 0.0059 23.8 8.8 86 113-212 4-95 (245)
498 PRK08198 threonine dehydratase 36.8 72 0.0016 31.1 5.5 80 194-278 164-265 (404)
499 PRK13535 erythrose 4-phosphate 36.8 43 0.00094 32.6 3.9 34 115-148 2-36 (336)
500 PRK06077 fabG 3-ketoacyl-(acyl 36.8 2.8E+02 0.006 23.9 8.8 85 114-212 6-96 (252)
No 1
>PRK09330 cell division protein FtsZ; Validated
Probab=100.00 E-value=3.8e-47 Score=366.41 Aligned_cols=165 Identities=65% Similarity=0.998 Sum_probs=160.3
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
...++|+||||||||||+||+|++.++.+++|||+|||.++|..++ +++||+||+..|+|+|+|+||++|++++++++
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~--a~~ki~lG~~~t~GlGaG~~pe~G~~aaee~~ 88 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSK--APVKIQLGEKLTRGLGAGANPEVGRKAAEESR 88 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCC--CCeEEEcCCcccccCCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999875 58999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN 271 (279)
++|+++|++||+|||+||||||||||++|+|++++|++++++++|||+||.|||.+|++||.++|++|++++|++|+|||
T Consensus 89 e~I~~~l~~~D~vfI~AGmGGGTGTGaapvIA~iake~g~ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~N 168 (384)
T PRK09330 89 EEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKELGILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPN 168 (384)
T ss_pred HHHHHHHcCCCEEEEEecCCCcccHHHHHHHHHHHHHcCCcEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhh
Q 044090 272 DKLLTAV 278 (279)
Q Consensus 272 d~L~~i~ 278 (279)
|+|++++
T Consensus 169 d~L~~~~ 175 (384)
T PRK09330 169 DKLLEVV 175 (384)
T ss_pred HHHHhhc
Confidence 9999876
No 2
>PRK13018 cell division protein FtsZ; Provisional
Probab=100.00 E-value=1.7e-45 Score=354.37 Aligned_cols=167 Identities=53% Similarity=0.863 Sum_probs=161.2
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
++...+||+||||||||+|+||+|++.+..+++|+|+|||.++|..++ +++|++||++.|+|+|+|+||++|++++++
T Consensus 24 ~~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L~~~~--a~~ki~iG~~~t~G~GaG~dp~~G~~aaee 101 (378)
T PRK13018 24 DDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHLAMIK--ADKKILIGKSLTRGLGAGGDPEVGRKAAEE 101 (378)
T ss_pred cccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCC--CCcEEecCCccCCCCCCCCChHHHHHHHHH
Confidence 446678999999999999999999999999999999999999999875 489999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEE
Q 044090 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVI 269 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~ 269 (279)
+.++|++++++||+|||+||||||||||++|+|++++++++++++++||+||.+||.+|++||.++|++|++++|++|+|
T Consensus 102 ~~d~I~~~le~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vivi 181 (378)
T PRK13018 102 SRDEIKEVLKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVI 181 (378)
T ss_pred HHHHHHHHhcCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred echHHHhhh
Q 044090 270 PNDKLLTAV 278 (279)
Q Consensus 270 DNd~L~~i~ 278 (279)
|||+|+++|
T Consensus 182 dNd~L~~i~ 190 (378)
T PRK13018 182 DNNRLLDIV 190 (378)
T ss_pred ecHHHHHHH
Confidence 999999875
No 3
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=100.00 E-value=2.1e-45 Score=350.56 Aligned_cols=169 Identities=60% Similarity=0.958 Sum_probs=162.7
Q ss_pred CCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHH
Q 044090 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 108 ~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa 187 (279)
..++..++||+||||||||||+||+|++.++.+++|||+|||.++|..++ +++|++||++.|+|+|+|+||++|++++
T Consensus 11 ~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~--a~~ki~iG~~~t~G~GaG~~~~~G~~~a 88 (349)
T TIGR00065 11 LIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTK--ADKKILIGKKLTRGLGAGGNPEIGRKAA 88 (349)
T ss_pred hcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCC--CCeEEEcCCCCCCCCCCCCCHHHHHHHH
Confidence 34566778999999999999999999999999999999999999999876 5899999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEE
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vI 267 (279)
++++++|++++++||+|||+||||||||||++|+|+++++++++++++|+|+||.+|+.+|+|||.++|++|++++|++|
T Consensus 89 ee~~d~Ir~~le~~D~vfI~aglGGGTGSG~apvia~~ake~~~l~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vi 168 (349)
T TIGR00065 89 EESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLI 168 (349)
T ss_pred HHHHHHHHHHHhCCCEEEEEEeccCccchhHHHHHHHHHHHcCCCEEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEechHHHhhh
Q 044090 268 VIPNDKLLTAV 278 (279)
Q Consensus 268 v~DNd~L~~i~ 278 (279)
+||||+|+++|
T Consensus 169 vidNd~L~~~~ 179 (349)
T TIGR00065 169 VIPNDKLLEVV 179 (349)
T ss_pred EEeCHHHHHhh
Confidence 99999999876
No 4
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=4.1e-45 Score=341.35 Aligned_cols=162 Identities=69% Similarity=1.047 Sum_probs=157.8
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI 194 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I 194 (279)
.||+||||||||||+||+|++.+.++++|||+|||.++|..++ +++|++||++.|+|+|+|+||++|++++++.+++|
T Consensus 1 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~--~~~k~~ig~~~t~g~Gag~~~~~g~~~a~~~~~~I 78 (304)
T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSK--APNKIQLGKELTRGLGAGGDPEVGRKAAEESREEI 78 (304)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCC--CCcEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999876 58999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHH
Q 044090 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKL 274 (279)
Q Consensus 195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L 274 (279)
++++++||+|||+||||||||||++|+|+++++++++++++|+|+||.+|+.+|+|||.++|++|++++|.+|+||||+|
T Consensus 79 ~~~l~~~d~v~i~aglGGGTGSG~ap~ia~~a~e~g~~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L 158 (304)
T cd02201 79 KEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKL 158 (304)
T ss_pred HHHHhCCCEEEEeeccCCCcchhHHHHHHHHHHHcCCCEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 044090 275 LTAV 278 (279)
Q Consensus 275 ~~i~ 278 (279)
+++|
T Consensus 159 ~~~~ 162 (304)
T cd02201 159 LEVV 162 (304)
T ss_pred HHhh
Confidence 9876
No 5
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=7.3e-45 Score=340.67 Aligned_cols=162 Identities=49% Similarity=0.727 Sum_probs=157.7
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI 194 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I 194 (279)
+||+|||+||||+|+||+|++.+..+++|+|+|||.++|..+. +++|+++|++.|+|+|+|+||++|++++++.+++|
T Consensus 1 ~~i~viGvGg~G~n~v~~~~~~~~~~~~~iainTd~~~L~~~~--a~~ki~iG~~~t~g~GaG~~~~~G~~~a~e~~~~I 78 (303)
T cd02191 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLE--AENRVLIGQARTKGLGAGANPELGAEAAEEVQEAI 78 (303)
T ss_pred CEEEEEEECchHHHHHHHHHHcCCCCccEEEEECcHHHHhcCC--CCcEEecCCccccCCCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999888999999999999999875 58999999999999999999999999999999999
Q ss_pred HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHH
Q 044090 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKL 274 (279)
Q Consensus 195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L 274 (279)
++++++||+|||+||||||||||++|+|+++++++++++++|+|+||.+|+.+|+|||.++|++|++++|.+|+||||+|
T Consensus 79 ~~~le~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L 158 (303)
T cd02191 79 DNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKL 158 (303)
T ss_pred HHHHcCCCEEEEEeccCCccchhHHHHHHHHHHHhCCCEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhh
Q 044090 275 LTAV 278 (279)
Q Consensus 275 ~~i~ 278 (279)
++++
T Consensus 159 ~~~~ 162 (303)
T cd02191 159 RQIG 162 (303)
T ss_pred HHHh
Confidence 9876
No 6
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.6e-44 Score=342.95 Aligned_cols=166 Identities=63% Similarity=0.957 Sum_probs=161.8
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
....+||+|||+||||+|+||+|++.++++++|+++|||.|+|+.++ +++|++||+..|+|+|+|+||++|+++|+++
T Consensus 8 ~~~~~~I~VIGvGg~G~n~v~~m~~~~~~gve~ia~nTD~q~L~~~~--a~~ki~iG~~~t~GlGaGa~P~vG~~aAee~ 85 (338)
T COG0206 8 ESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSK--ADRKILIGESITRGLGAGANPEVGRAAAEES 85 (338)
T ss_pred cccCceEEEEEeCCcchHHHHHHHHhhhCceEEEEeccCHHHHhccc--cCeEEEeccceeeccCCCCCcHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999886 4899999999999999999999999999999
Q ss_pred HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEe
Q 044090 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIP 270 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~D 270 (279)
+++|++.|+++|++||++|||||||||++|+|++++|+++++|++|+|+||++||.+|+.||.++|++|++++|++|+||
T Consensus 86 ~~~I~~~l~g~dmvfitaG~GGGTGtGaaPVvakiake~g~ltvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~ 165 (338)
T COG0206 86 IEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKELGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIP 165 (338)
T ss_pred HHHHHHHhccCCeEEEEeeecCCccccccHHHHHHHHhcCCcEEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHhhh
Q 044090 271 NDKLLTAV 278 (279)
Q Consensus 271 Nd~L~~i~ 278 (279)
||+|++..
T Consensus 166 Ndkll~~~ 173 (338)
T COG0206 166 NDKLLKGK 173 (338)
T ss_pred cHHHHhcc
Confidence 99999864
No 7
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=100.00 E-value=5e-40 Score=313.27 Aligned_cols=164 Identities=30% Similarity=0.456 Sum_probs=154.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCc-----ceEEEEeCcHHHHhcC-CCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTG-----VEFWIVNTDAQAMKVS-PVIPENRLQIGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~-----ve~iavNTD~~~L~~s-~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
|||+|||+||||+||||+|++.+.++ ++++++|||.++|..+ ..++++|+++|++.++|+|+|+||++|+++++
T Consensus 1 m~i~viGvGg~G~niv~~l~~~~~~~~~~~~~~~iavntD~~~L~~l~~~~~~~ki~~g~~~t~G~GaG~~~~~G~~~ae 80 (349)
T cd02202 1 MRVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQSEVKGHGVGADRELGAEVAE 80 (349)
T ss_pred CEEEEEEeCCcHHHHHHHHHHhCCCcCCccceeEEEEECCHHHHHhhhcCCCCCEEEecCcccCCCCCCCChHHHHHHHH
Confidence 79999999999999999999988766 8999999999999865 34568999999999999999999999999999
Q ss_pred HHHHHHHHHhcC-----CCEEEEEeecCCCcccCHHHHHHHHHHHc-CCcEEEEEccCCCCchhHHHHHHHHHHHHHHHh
Q 044090 189 ESKVAIEEAISG-----ADMIFVTAGMGGGTGTGAAPVIAGIAKSM-GILTVGIATVPFCFEGRRRAIQAQEGVANLRNN 262 (279)
Q Consensus 189 e~~e~I~~~Le~-----~D~vfIvAGLGGGTGSG~aPvIaeiake~-gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~ 262 (279)
+++++|++++++ +|+|||+||||||||||++|+|+++++++ ++++++++++||.+|+..++|||.++|++|+++
T Consensus 81 e~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~iae~lke~~~~~~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~ 160 (349)
T cd02202 81 EDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAKELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEE 160 (349)
T ss_pred HHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHHHHHHHhCCccEEEEEEecCCCCCchhhHHHHHHHHHHHHh
Confidence 999999999987 77999999999999999999999999985 579999999999999999999999999999999
Q ss_pred CCEEEEEechHHHhhh
Q 044090 263 VDTLIVIPNDKLLTAV 278 (279)
Q Consensus 263 aD~vIv~DNd~L~~i~ 278 (279)
+|.+|+||||+|++++
T Consensus 161 ~D~viv~dNd~L~~~~ 176 (349)
T cd02202 161 ADAIILFDNDAWKRKG 176 (349)
T ss_pred CCEEEEEehHHHhhhc
Confidence 9999999999998865
No 8
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=8.6e-34 Score=248.61 Aligned_cols=160 Identities=54% Similarity=0.778 Sum_probs=149.5
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHH
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIE 195 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~ 195 (279)
||+|+|+|++|+|+|+.+.+.+ .++++++|||...|+.... ..+++.+|...++|+|+|+||+.|++++++.+++|+
T Consensus 1 ~i~~~g~g~~g~r~v~~d~e~~--~i~~i~~~t~~~~l~~~~~-~~~k~~~Gn~~~~G~~~~~~~~~g~~~~~~~~~~ir 77 (192)
T smart00864 1 KIKVFGVGGYGPNAVLVDLEPG--VVDEVRANTDAQALNPESL-ASGKIGAGNNWTRGLGAGADPEVGREAAEESLDEIR 77 (192)
T ss_pred CeEEEEeCCchhhHHhhhcccC--CceEEEECCHHHHhCCccc-ccchhcccccccccCCCCCChHHHHHHHHHHHHHHH
Confidence 6899999999999999998764 6888999999988887322 368889999999999999999999999999999999
Q ss_pred HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHH
Q 044090 196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLL 275 (279)
Q Consensus 196 ~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~ 275 (279)
+++++||+|||+||||||||||++|+|++++++++..+++++++||.+|+..++|||.++|++|++++|.+|+||||+|+
T Consensus 78 ~~le~~d~~~i~~slgGGTGsG~~~~i~~~~~~~~~~~~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~ 157 (192)
T smart00864 78 EELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVAVVTKPFVFEGVVRPYNAELGLEELREHVDSLIVIDNDALL 157 (192)
T ss_pred HHhcCCCEEEEeccCCCCccccHHHHHHHHHHHcCCcEEEEEEEeEeecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHH
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred hhh
Q 044090 276 TAV 278 (279)
Q Consensus 276 ~i~ 278 (279)
++|
T Consensus 158 ~~~ 160 (192)
T smart00864 158 DIC 160 (192)
T ss_pred HHH
Confidence 876
No 9
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.3e-33 Score=251.24 Aligned_cols=163 Identities=28% Similarity=0.408 Sum_probs=142.3
Q ss_pred eEEEEeeCcchHHHHHHHHH-----------------------------cCCCcceEEEEeCcHHHHhcCCCCCCCeEEc
Q 044090 116 KIKVIGVGGGGSNAVNRMIE-----------------------------SSMTGVEFWIVNTDAQAMKVSPVIPENRLQI 166 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~-----------------------------~~~~~ve~iavNTD~~~L~~s~v~a~~ri~i 166 (279)
+|.+|||||||++|++++.+ .+...+++++||||.+.|........++++.
T Consensus 1 eii~i~iGq~G~qIg~~~~~~l~~e~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~ 80 (216)
T PF00091_consen 1 EIIVIGIGQCGNQIGDAFWELLCREHGINPDSKSQYNRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFD 80 (216)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHHHHCTBTTTSSSSTTSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHhhccccccccccccccccceeeeccccccccccccccccccccccccccccccccc
Confidence 58999999999999999998 1122378899999999999854322234777
Q ss_pred CcccccCC-CCCCCchhhHH-----HHHHHHHHHHHHh---cCCCEEEEEeecCCCcccCHHHHHHHHHHHc--CCcEEE
Q 044090 167 GCELTRGL-GAGGNPSVGMN-----AANESKVAIEEAI---SGADMIFVTAGMGGGTGTGAAPVIAGIAKSM--GILTVG 235 (279)
Q Consensus 167 G~~~t~G~-GaG~np~~G~e-----aa~e~~e~I~~~L---e~~D~vfIvAGLGGGTGSG~aPvIaeiake~--gi~tva 235 (279)
+...+.|. |+|+||++|+. ++++.+++|++++ +.+|+|||++|||||||||++|+|++.+++. ++++++
T Consensus 81 ~~~~~~~~~g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~ 160 (216)
T PF00091_consen 81 PNNLISGQEGSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIIS 160 (216)
T ss_dssp GGGEEETSSTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceee
Confidence 77766665 99999999987 8899999999999 5556999999999999999999999999986 799999
Q ss_pred EEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 236 IvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
++++|+.+|+..++|||.++|++|.+++|.+|+|||++|+++|
T Consensus 161 ~~ilP~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~ 203 (216)
T PF00091_consen 161 FSILPFSSEGVVEPYNALLSLSELQEYADSVILFDNDALYKIC 203 (216)
T ss_dssp EEEE-CGGGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHH
T ss_pred ccccccccccccccceehhHHHHHHHhCCEEEEEcHHHHHHHH
Confidence 9999998899999999999999999999999999999999886
No 10
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.96 E-value=6.6e-29 Score=233.00 Aligned_cols=157 Identities=29% Similarity=0.386 Sum_probs=135.3
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCC-CCeEEcCcccccCCCCCCCchhhHHHH-----HH
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIP-ENRLQIGCELTRGLGAGGNPSVGMNAA-----NE 189 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a-~~ri~iG~~~t~G~GaG~np~~G~eaa-----~e 189 (279)
+|++||+||||++|++++.+.. ++||||.+.|....... .+.+.++...+++.|+|+||++|+.++ ++
T Consensus 1 eii~i~iG~~G~~i~~~~~~~~------v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~~gag~n~~~G~~~~~~~~~e~ 74 (328)
T cd00286 1 EIVTIQLGQAGNQIGAKFWEQL------VLVDTEPGVIDETLSGPYRLLFCIGQLITHGGGAGNNWAFGHETAGEEYQEE 74 (328)
T ss_pred CeEEEecCccHhHHHHHHHHhh------heecCCHHHHHHHhCcccccccCccceeecCCCCCCCcceeeccccHHHHHH
Confidence 4899999999999999998863 89999999988754322 233456777788899999999987543 55
Q ss_pred HHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-cC-CcEEEEEccCCCCch-hHHHHHHHHHHHHHHHhC
Q 044090 190 SKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-MG-ILTVGIATVPFCFEG-RRRAIQAQEGVANLRNNV 263 (279)
Q Consensus 190 ~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~g-i~tvaIvtlPf~~Eg-~~r~~NA~~gL~~L~e~a 263 (279)
..+.|++.+|.|| +|+|+|+||||||||++|+|++.+++ |+ .++++++++|+.+|+ ..++|||..+|++|.+++
T Consensus 75 i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~~~~~~~~~~yNa~l~l~~L~e~~ 154 (328)
T cd00286 75 ILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHS 154 (328)
T ss_pred HHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCCCCCcchhhhhHHHHHHHHHHhcC
Confidence 6677788888887 89999999999999999999999987 43 688999999999998 899999999999999999
Q ss_pred CEEEEEechHHHhhh
Q 044090 264 DTLIVIPNDKLLTAV 278 (279)
Q Consensus 264 D~vIv~DNd~L~~i~ 278 (279)
|.+|+|||++|+++|
T Consensus 155 d~~i~~dN~~l~~~~ 169 (328)
T cd00286 155 DCLVVIDNEALFDIC 169 (328)
T ss_pred CeEEEecchhHHHHh
Confidence 999999999999876
No 11
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.91 E-value=1.4e-24 Score=208.52 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=130.1
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhH-----HHHHHH
Q 044090 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGM-----NAANES 190 (279)
Q Consensus 117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~-----eaa~e~ 190 (279)
|.+|+|||||++|.+++.+.- +.||+|.+.+.........++ ......+...|+|++|+.|+ +++++.
T Consensus 2 ii~i~vGq~G~qig~~~w~~~------i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~e~~ 75 (382)
T cd06059 2 IISIQIGQCGNQIGNKFWELL------ILVDLDPRVINEILQGQLSKLFDPNQLVNGKEGSGNNWARGYYTIGPELIDEI 75 (382)
T ss_pred eEEEecCCcHHHHHHHHHHHH------HcccCCcchhhhhhcccccccCCcccEEeccccccccccccccccCHHHHHHH
Confidence 789999999999999998753 889999998876533111111 11222345569999998764 788999
Q ss_pred HHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-c-CCcEEEEEccCCCCch--hHHHHHHHHHHHHHHHhC
Q 044090 191 KVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-M-GILTVGIATVPFCFEG--RRRAIQAQEGVANLRNNV 263 (279)
Q Consensus 191 ~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~-gi~tvaIvtlPf~~Eg--~~r~~NA~~gL~~L~e~a 263 (279)
.+.|++.+|.|| +|+|+++||||||||+++.|++.+++ + +..++++++.|+..++ ..++||+..+|++|.+++
T Consensus 76 ~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~s 155 (382)
T cd06059 76 LDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSPQGSSNVVEPYNSILSLNHLLENS 155 (382)
T ss_pred HHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEeccCccCCccccchHHHHhHHHHHhcC
Confidence 999999999999 66999999999999999999999986 5 3667888888998876 789999999999999999
Q ss_pred CEEEEEechHHHhhh
Q 044090 264 DTLIVIPNDKLLTAV 278 (279)
Q Consensus 264 D~vIv~DNd~L~~i~ 278 (279)
|.+|++||++|.++|
T Consensus 156 d~~i~~~N~~l~~~~ 170 (382)
T cd06059 156 DSVILFDNEALYNIL 170 (382)
T ss_pred CeeEEeehHHHHHHH
Confidence 999999999999876
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.87 E-value=5.9e-22 Score=191.06 Aligned_cols=155 Identities=19% Similarity=0.267 Sum_probs=123.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcC---CCcceEEEEeCcHHHHhcCCCC------CCCeEEcCcccccCCCCCCCchhh---
Q 044090 116 KIKVIGVGGGGSNAVNRMIESS---MTGVEFWIVNTDAQAMKVSPVI------PENRLQIGCELTRGLGAGGNPSVG--- 183 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~---~~~ve~iavNTD~~~L~~s~v~------a~~ri~iG~~~t~G~GaG~np~~G--- 183 (279)
.|..|.+||||++|.+++.+.- .--...+.||+|...++..... .++.+..++ .|+|+||+.|
T Consensus 2 Eii~i~~GqcGnqig~~~w~~~~~eh~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~-----~gaGnn~a~G~~~ 76 (379)
T cd02190 2 EIIVVQVGQCGNQIGCRFWDLALREHLKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDV-----SGAGNNWAVGYHQ 76 (379)
T ss_pred ceEEEecCcHHHHHHHHHHHHHHHhhcCCcceeccCChhHHHHHhcCccccccCcccccccC-----CCCCCCccceeec
Confidence 4789999999999999986542 1236778999998877754221 123333332 4899999876
Q ss_pred --HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-cC-CcEEEEEccCCCCch-hHHHHHHHHH
Q 044090 184 --MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-MG-ILTVGIATVPFCFEG-RRRAIQAQEG 255 (279)
Q Consensus 184 --~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~g-i~tvaIvtlPf~~Eg-~~r~~NA~~g 255 (279)
.++.++.+|+|++++|.|| +|+|++|||||||||+++.|++.+++ |+ ...+.+++.|+..++ ..++||+..+
T Consensus 77 ~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~~v~P~~~~~~~v~~yN~~ls 156 (379)
T cd02190 77 YGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADDDVITSPYNSVLA 156 (379)
T ss_pred cchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEEeecCCCCCCceecccHHHHH
Confidence 4678889999999999999 67999999999999999999999875 54 445556667776544 5689999999
Q ss_pred HHHHHHhCCEEEEEechHHH
Q 044090 256 VANLRNNVDTLIVIPNDKLL 275 (279)
Q Consensus 256 L~~L~e~aD~vIv~DNd~L~ 275 (279)
|+.|.+++|.+|+|||++|.
T Consensus 157 l~~l~~~~d~~i~~~N~~l~ 176 (379)
T cd02190 157 LRELIEHADCVLPIENQALV 176 (379)
T ss_pred HHHHHHhCCeeEEeccHHHH
Confidence 99999999999999999986
No 13
>PTZ00387 epsilon tubulin; Provisional
Probab=99.84 E-value=1.2e-20 Score=186.66 Aligned_cols=158 Identities=19% Similarity=0.290 Sum_probs=124.5
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC---Cc--------------------------ceEEEEeCcHHHHhcCCC---
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM---TG--------------------------VEFWIVNTDAQAMKVSPV--- 158 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~---~~--------------------------ve~iavNTD~~~L~~s~v--- 158 (279)
.|..|-|||||+.|-+++.+. .. .+ ...+.||++...++....
T Consensus 3 EiI~iqvGQCGnQIG~~fW~~l~~Eh~~i~~~g~~~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~~~~ 82 (465)
T PTZ00387 3 EIVTVQVGQCGNQLGHRFWDVALKEHKKINANPQYDDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILKSPL 82 (465)
T ss_pred cEEEEEcCchHHHHHHHHHHHHHHHhCccCCCCcccccccceecccccccccCCCccccCcccccCCCccHHHHhhcCCc
Confidence 488999999999999877432 21 00 223567887766654321
Q ss_pred ---CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHH
Q 044090 159 ---IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAK 227 (279)
Q Consensus 159 ---~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiak 227 (279)
..++.+..+ -.|+|+||+.| .++.++..|.|++++|.|| +|+|++|||||||||+++.|++.++
T Consensus 83 ~~~f~~~~~i~~-----~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~ 157 (465)
T PTZ00387 83 GDLFDENFFVSD-----VSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLE 157 (465)
T ss_pred ccccCccccccc-----CCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHH
Confidence 112233333 35999999987 7889999999999999999 6699999999999999999999988
Q ss_pred H-cC-CcEEEEEccCCCCch-hHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 228 S-MG-ILTVGIATVPFCFEG-RRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 228 e-~g-i~tvaIvtlPf~~Eg-~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
+ |+ ..++++++.|+..++ ..++||+.++|+.|.+++|.+|+||||+|+++|
T Consensus 158 d~y~~~~~~~~~V~P~~~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~ 211 (465)
T PTZ00387 158 DEFPHVFRFCPVVFPSAVDDVITSPYNSFFALRELIEHADCVLPLDNDALANIA 211 (465)
T ss_pred HhcccCceeeeEecCCCCCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHH
Confidence 6 54 556778888886544 578999999999999999999999999999987
No 14
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.84 E-value=3.1e-20 Score=181.45 Aligned_cols=158 Identities=20% Similarity=0.267 Sum_probs=124.8
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--C------------c--------------ceEEEEeCcHHHHhcCCC----
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM--T------------G--------------VEFWIVNTDAQAMKVSPV---- 158 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~--~------------~--------------ve~iavNTD~~~L~~s~v---- 158 (279)
.|..|-+||||+.|-+.+.+. .. . . ...++||+|...|.....
T Consensus 2 eii~i~vGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~ 81 (425)
T cd02187 2 EIVHIQAGQCGNQIGAKFWEVISDEHGLDPTGTYKGDSDLQLERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFG 81 (425)
T ss_pred ceEEEeCCccHhHHHHHHHHHHHHHcCCCCCCCccCCccccccccceeEEecCCCceeeeeeeccCChhhhhhhhcCccc
Confidence 478899999999998877543 11 0 0 234789999887775422
Q ss_pred --CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090 159 --IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS 228 (279)
Q Consensus 159 --~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake 228 (279)
..+++++.|+ .|+|++|+.| .++.++.++.|++++|.|| +|+|+++||||||||+++.|++.+++
T Consensus 82 ~l~~~~~~~~~~-----~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d 156 (425)
T cd02187 82 QLFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIRE 156 (425)
T ss_pred ceecCcceeecc-----CCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHH
Confidence 1234555554 3899999864 5888999999999999999 88999999999999999999998875
Q ss_pred -cC-CcEEEEEccCC--CCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 229 -MG-ILTVGIATVPF--CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 229 -~g-i~tvaIvtlPf--~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
|+ ..++++.+.|+ ..|...++||+..+|+.|.+++|.+|+|||++|+++|
T Consensus 157 ~y~~~~~~~~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~ 210 (425)
T cd02187 157 EYPDRIMATFSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDIC 210 (425)
T ss_pred hcCCcceEEEEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHH
Confidence 65 33455555565 3488899999999999999999999999999999987
No 15
>PLN00220 tubulin beta chain; Provisional
Probab=99.83 E-value=3.3e-20 Score=182.30 Aligned_cols=158 Identities=20% Similarity=0.271 Sum_probs=127.0
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CCC--------------c--------------ceEEEEeCcHHHHhcCCC----
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SMT--------------G--------------VEFWIVNTDAQAMKVSPV---- 158 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~~--------------~--------------ve~iavNTD~~~L~~s~v---- 158 (279)
.|..|-+||||+.|-+.+.+. ... . ...+.||+|...+.....
T Consensus 3 Eii~i~iGqcGnqiG~~~w~~l~~eh~~~~~g~~~~~~~~~~~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~ 82 (447)
T PLN00220 3 EILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYG 82 (447)
T ss_pred ceEEEecCccHhHHHHHHHHHHHHHhCCCCCCCcCCCcccccccccceeccCCCCcccceeEecCCcHHHHHHHhcCccc
Confidence 478899999999998877432 110 0 233678888776654211
Q ss_pred --CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090 159 --IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS 228 (279)
Q Consensus 159 --~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake 228 (279)
..++.+..++ .|+|+||+.| .+..++.++.|++.+|.|| +|+|++|||||||||+++.|++.+++
T Consensus 83 ~~~~~~~~~~~~-----~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~ 157 (447)
T PLN00220 83 QIFRPDNFVFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIRE 157 (447)
T ss_pred cccCccceEecc-----cCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHH
Confidence 1233444443 4899999975 5788999999999999999 99999999999999999999988765
Q ss_pred -cC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 229 -MG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 229 -~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
|+ +.+++|+|.|+..|...++||+.++|+.|.+++|.+|+|||++|+++|
T Consensus 158 ~y~~~~~~~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~ 211 (447)
T PLN00220 158 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 211 (447)
T ss_pred hccccceeeeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHH
Confidence 64 666778877777899999999999999999999999999999999987
No 16
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.82 E-value=8.9e-20 Score=178.75 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=125.6
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc----------------------------ceEEEEeCcHHHHhcCCCCC
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG----------------------------VEFWIVNTDAQAMKVSPVIP 160 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~----------------------------ve~iavNTD~~~L~~s~v~a 160 (279)
.|..|-+||||+.|-.++.+. .. .+ ...+.||+|...+..... .
T Consensus 2 EiI~i~iGqcGnqiG~~~w~~l~~Eh~~~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~-~ 80 (434)
T cd02186 2 EVISIHIGQAGIQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRT-G 80 (434)
T ss_pred ceEEEeCCchHhHHHHHHHHHHHHHhCcCCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhcc-C
Confidence 478899999999998876432 11 00 234788999888876432 1
Q ss_pred CCeEEcCcc-c-ccCCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-c
Q 044090 161 ENRLQIGCE-L-TRGLGAGGNPSV-----GMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-M 229 (279)
Q Consensus 161 ~~ri~iG~~-~-t~G~GaG~np~~-----G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~ 229 (279)
+.+-+++++ . .+-.|+|+||+. |.++.++.+++|++++|.|| +|+|+++||||||||+++.|++.+++ |
T Consensus 81 ~~~~l~~~~~~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y 160 (434)
T cd02186 81 TYRQLFHPEQLISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDY 160 (434)
T ss_pred ccccccCccceeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhc
Confidence 122233332 1 222478999976 56788999999999999998 79999999999999999999998875 6
Q ss_pred C-CcEEEEEccCCCC--chhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 230 G-ILTVGIATVPFCF--EGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 230 g-i~tvaIvtlPf~~--Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
+ ..++++++.|+.. |...++||+..+|+.|.+++|.+++|||++|+++|
T Consensus 161 ~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~ 212 (434)
T cd02186 161 GKKSKLEFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDIC 212 (434)
T ss_pred CccceeeEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHH
Confidence 6 5566666677753 77889999999999999999999999999999987
No 17
>COG5023 Tubulin [Cytoskeleton]
Probab=99.82 E-value=1.6e-19 Score=172.88 Aligned_cols=158 Identities=21% Similarity=0.310 Sum_probs=128.3
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHHHhcCC-----
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSP----- 157 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~--------------------------ve~iavNTD~~~L~~s~----- 157 (279)
.|.-|=+||||+-|=+++.+. ++ .| ...|.||..+.-+....
T Consensus 3 EIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~y~ 82 (443)
T COG5023 3 EIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYG 82 (443)
T ss_pred eeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCccc
Confidence 366678999999998887654 21 11 11255666544444311
Q ss_pred -CCCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHH-
Q 044090 158 -VIPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAK- 227 (279)
Q Consensus 158 -v~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiak- 227 (279)
...+.++.+|++ |||+||+.| ++..+..++.|+++.++|| +|+|+|++|||||||++.++++.++
T Consensus 83 ~lf~Pen~i~gke-----gAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~ 157 (443)
T COG5023 83 SLFHPENIIFGKE-----GAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLRE 157 (443)
T ss_pred cccChhheeeccc-----cccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHH
Confidence 123557777776 799999986 7888999999999999999 8899999999999999999987665
Q ss_pred HcC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 228 SMG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 228 e~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
||+ +.+|+|++-|..++...++||+.+++++|.+++|+++++||++|++||
T Consensus 158 eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~ 211 (443)
T COG5023 158 EYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDIC 211 (443)
T ss_pred hcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHH
Confidence 576 888999999999999999999999999999999999999999999998
No 18
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.82 E-value=1.4e-19 Score=178.01 Aligned_cols=162 Identities=16% Similarity=0.260 Sum_probs=125.3
Q ss_pred EEEEeeCcchHHHHHHHHHc-----CC--C----------------------cceEEEEeCcHHHHhcCCCCC-CCeEEc
Q 044090 117 IKVIGVGGGGSNAVNRMIES-----SM--T----------------------GVEFWIVNTDAQAMKVSPVIP-ENRLQI 166 (279)
Q Consensus 117 I~VIGIGgaG~NIVd~l~~~-----~~--~----------------------~ve~iavNTD~~~L~~s~v~a-~~ri~i 166 (279)
|..|-|||||+.|-+++.+. .. . -+..+.||+|...++...... ..+.++
T Consensus 2 iItiqvGQCGNQIG~~fw~~l~~Eh~~~~~g~~~~~~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f 81 (446)
T cd02189 2 VVTVQLGQCGNQLGHELFDTLAKEASSSDDEGYKYERDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKY 81 (446)
T ss_pred eEEEEcCcchhHHHHHHHHHHHHHhCCCCCCCccccccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCccccc
Confidence 67899999999999877432 11 0 033478999988877642211 011111
Q ss_pred Ccc--cccCCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-cC-CcEE
Q 044090 167 GCE--LTRGLGAGGNPSV-----GMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS-MG-ILTV 234 (279)
Q Consensus 167 G~~--~t~G~GaG~np~~-----G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake-~g-i~tv 234 (279)
-++ .++..|+|+||+. |.++.++.+|.|++.+|.|| +|+++++||||||||+++.|++.+++ ++ ..++
T Consensus 82 ~~~~~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~ 161 (446)
T cd02189 82 DKKNVICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLL 161 (446)
T ss_pred CchheeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCcccee
Confidence 111 2334599999996 56888999999999999888 89999999999999999999998875 55 4466
Q ss_pred EEEccCCC-CchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 235 GIATVPFC-FEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 235 aIvtlPf~-~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
++++.|+. .|...++||+.++|+.|.+++|.+|+|||++|.++|
T Consensus 162 ~~~v~P~~~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~ 206 (446)
T cd02189 162 NIVVWPYTTGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRIC 206 (446)
T ss_pred eeeccCCCCCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHH
Confidence 77778864 366789999999999999999999999999999987
No 19
>PTZ00335 tubulin alpha chain; Provisional
Probab=99.82 E-value=1e-19 Score=179.11 Aligned_cols=158 Identities=16% Similarity=0.221 Sum_probs=123.4
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc----------------------------ceEEEEeCcHHHHhcCCC--
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG----------------------------VEFWIVNTDAQAMKVSPV-- 158 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~----------------------------ve~iavNTD~~~L~~s~v-- 158 (279)
.|..|-+||||+.|-+++.+. +. .+ ...+.||+|...+.....
T Consensus 3 EiI~iqiGqcGnqiG~~fW~~~~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 82 (448)
T PTZ00335 3 EVISIHIGQAGIQVGNACWELFCLEHGIQPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGT 82 (448)
T ss_pred cEEEEeCCccHHHHHHHHHHHHHHHhCcCCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcccCc
Confidence 488999999999999877432 11 00 122667887776654321
Q ss_pred ----CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHH
Q 044090 159 ----IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA 226 (279)
Q Consensus 159 ----~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeia 226 (279)
..++.+..|+ .|+|+||+.| .+..++.+|.|++++|.|| +|+|++|||||||||+++.|++.+
T Consensus 83 ~~~l~~~~~~i~~~-----~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l 157 (448)
T PTZ00335 83 YRQLFHPEQLISGK-----EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERL 157 (448)
T ss_pred cccccCchheeecC-----CCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHH
Confidence 1233444443 4899999875 5678999999999999999 779999999999999999999988
Q ss_pred HH-cC-CcEEEEEccCC--CCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 227 KS-MG-ILTVGIATVPF--CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 227 ke-~g-i~tvaIvtlPf--~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
++ |+ ..++++++.|+ ..|...++||+..+|+.|.+++|.+++|||++|+++|
T Consensus 158 ~d~yp~~~~~~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~ 213 (448)
T PTZ00335 158 SVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDIC 213 (448)
T ss_pred HHhccccceeeEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHH
Confidence 75 54 45566666776 4578899999999999999999999999999999887
No 20
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.81 E-value=2.8e-19 Score=175.32 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=121.4
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHHHhcCCC----
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSPV---- 158 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~--------------------------ve~iavNTD~~~L~~s~v---- 158 (279)
.|..|-|||||+.|-+++.+. .. .+ ...+.||+|...++....
T Consensus 2 EiI~i~iGQcGnqIG~~~We~l~~eh~~~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~ 81 (431)
T cd02188 2 EIITLQVGQCGNQIGSEFWKQLCAEHGISPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYR 81 (431)
T ss_pred cEEEEEcCchHhHHHHHHHHHHHHHhCCCCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCccc
Confidence 478899999999999877432 11 00 223678888776654321
Q ss_pred --CCCCeEEcCcccccCCCCCCCchhhHHH----HHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-
Q 044090 159 --IPENRLQIGCELTRGLGAGGNPSVGMNA----ANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS- 228 (279)
Q Consensus 159 --~a~~ri~iG~~~t~G~GaG~np~~G~ea----a~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake- 228 (279)
..++.+..+++ |.|+|+||+.|+.. .++.++.|++.+|.|| +|+|++|||||||||+++.|++.+++
T Consensus 82 ~lf~~~~~~~~~~---~~gagnnwa~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~SlgGGTGSG~gs~l~e~L~d~ 158 (431)
T cd02188 82 NLYNPENIFLSKH---GGGAGNNWASGYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLERLNDR 158 (431)
T ss_pred cccCccceEeecc---CCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeEEEecCCCCcchhHHHHHHHHHHhH
Confidence 12344544432 34999999998654 4566777788888897 99999999999999999999998875
Q ss_pred cC-CcEEEEEccCCCCc---hhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 229 MG-ILTVGIATVPFCFE---GRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 229 ~g-i~tvaIvtlPf~~E---g~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
|+ ..++++++.|+..+ ...++||+..+|+.|.+++|.+++||||+|+++|
T Consensus 159 y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~ 212 (431)
T cd02188 159 YPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIA 212 (431)
T ss_pred cCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHH
Confidence 65 44566666787543 4689999999999999999999999999999987
No 21
>PLN00222 tubulin gamma chain; Provisional
Probab=99.80 E-value=3.1e-19 Score=176.02 Aligned_cols=160 Identities=17% Similarity=0.254 Sum_probs=122.0
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHHHhcCCC----
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSPV---- 158 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~--------------------------ve~iavNTD~~~L~~s~v---- 158 (279)
.|..|-+||||+.|-+++.+. .. .+ ...+.||++...++....
T Consensus 4 EiI~i~vGQcGnqiG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~ 83 (454)
T PLN00222 4 EIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYR 83 (454)
T ss_pred cEEEEecCchHHHHHHHHHHHHHHHhCCCCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCccc
Confidence 488999999999999877432 11 00 234678888776654321
Q ss_pred --CCCCeEEcCcccccCCCCCCCchhhH----HHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH-
Q 044090 159 --IPENRLQIGCELTRGLGAGGNPSVGM----NAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS- 228 (279)
Q Consensus 159 --~a~~ri~iG~~~t~G~GaG~np~~G~----eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake- 228 (279)
..++.+..|++ |.|+|+||+.|+ +..++.++.|++.+|.|| +|++++|||||||||+++.|++.+++
T Consensus 84 ~lf~~~~~~~~~~---~~gagnn~a~Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~GGTGSGlgs~lle~L~d~ 160 (454)
T PLN00222 84 NLYNHENIFVSDH---GGGAGNNWASGYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDR 160 (454)
T ss_pred cccCccceeeccc---CCCcccchHHhHHHHHHHHHHHHHHHHHHHHhCCCccceEEeecCCCCccchHHHHHHHHHHhh
Confidence 12334555543 338999999985 445666777788888888 99999999999999999999998875
Q ss_pred cC-CcEEEEEccCCCC---chhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 229 MG-ILTVGIATVPFCF---EGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 229 ~g-i~tvaIvtlPf~~---Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
|+ ..++++.+.|+.. +...++||+..+|+.|.+++|.+|+|||++|+++|
T Consensus 161 y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic 214 (454)
T PLN00222 161 YSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA 214 (454)
T ss_pred cCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHH
Confidence 65 4466666678743 34589999999999999999999999999999998
No 22
>PTZ00010 tubulin beta chain; Provisional
Probab=99.79 E-value=1.3e-18 Score=171.10 Aligned_cols=158 Identities=20% Similarity=0.301 Sum_probs=122.8
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc--------------------------ceEEEEeCcHHHHhcCCC----
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG--------------------------VEFWIVNTDAQAMKVSPV---- 158 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~--------------------------ve~iavNTD~~~L~~s~v---- 158 (279)
.|..|-+||||+.|-+.+.+. .. .+ ...+.||+|...+.....
T Consensus 3 Eii~i~vGqcGnqiG~~~we~l~~eh~~~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~ 82 (445)
T PTZ00010 3 EIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYG 82 (445)
T ss_pred cEEEEeccchHhHHHHHHHHHHHHHhCCCCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccchh
Confidence 478899999999988766432 11 00 134778998887764321
Q ss_pred --CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090 159 --IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS 228 (279)
Q Consensus 159 --~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake 228 (279)
..++++.+|+ .|+|+||+.| .+..++..+.|++++|.|| +|+|+++||||||||++..|++.+++
T Consensus 83 ~lf~~~~~~~~~-----~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~d 157 (445)
T PTZ00010 83 QLFRPDNFIFGQ-----SGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLRE 157 (445)
T ss_pred hhcCccceeecc-----cCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHh
Confidence 1234555554 4899999875 5788999999999999998 99999999999999999999998874
Q ss_pred -cC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 229 -MG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 229 -~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
|+ +.+++|++.|...+...++||+..+++.|.+++|.+|+|||++|+++|
T Consensus 158 ey~~~~~~~~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~ 211 (445)
T PTZ00010 158 EYPDRIMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDIC 211 (445)
T ss_pred hCCccceeeeEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHH
Confidence 65 344455443344567899999999999999999999999999999998
No 23
>PLN00221 tubulin alpha chain; Provisional
Probab=99.79 E-value=1.1e-18 Score=171.83 Aligned_cols=158 Identities=16% Similarity=0.205 Sum_probs=123.9
Q ss_pred eEEEEeeCcchHHHHHHHHHc-----CC--Cc----------------------------ceEEEEeCcHHHHhcCCC--
Q 044090 116 KIKVIGVGGGGSNAVNRMIES-----SM--TG----------------------------VEFWIVNTDAQAMKVSPV-- 158 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~-----~~--~~----------------------------ve~iavNTD~~~L~~s~v-- 158 (279)
.|..|-|||||+.|-+++.+. +. .+ ...+.||+|...++....
T Consensus 3 EiItiqvGQcGnQIG~~fW~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~ 82 (450)
T PLN00221 3 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT 82 (450)
T ss_pred eEEEEeCCchHHHHHHHHHHHHHHHhCcCCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhccCc
Confidence 488999999999999876433 11 00 223668888777665321
Q ss_pred ----CCCCeEEcCcccccCCCCCCCchhh-----HHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHH
Q 044090 159 ----IPENRLQIGCELTRGLGAGGNPSVG-----MNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIA 226 (279)
Q Consensus 159 ----~a~~ri~iG~~~t~G~GaG~np~~G-----~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeia 226 (279)
..++.+..++ .|+|+||+.| .+..++.++.|++++|.|| +|+|+++||||||||.+..|++.+
T Consensus 83 ~~~lf~~~~~i~~~-----~gagNnwa~Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~Sl~GGtGSGlgs~~le~l 157 (450)
T PLN00221 83 YRQLFHPEQLISGK-----EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERL 157 (450)
T ss_pred cccccCccceeccC-----CCccccccccccchhHHHHHHHHHHHHHHHHhccCccceeEeeccCCCccchHHHHHHHHH
Confidence 1223444443 4899999985 5788999999999999999 889999999999999999999888
Q ss_pred HH-cC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 227 KS-MG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 227 ke-~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
++ |+ +.+++|+|.|...+...++||+.++|+.|.+++|.+++|||++|+++|
T Consensus 158 ~d~y~~~~~~~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~ 213 (450)
T PLN00221 158 SVDYGKKSKLGFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDIC 213 (450)
T ss_pred HHhcccccceeeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHH
Confidence 75 65 555666655545567789999999999999999999999999999987
No 24
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=99.58 E-value=3.2e-14 Score=137.00 Aligned_cols=159 Identities=16% Similarity=0.235 Sum_probs=118.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHc-----CC----------------Cc------------ceEEEEeCcHHHHhcCCC---
Q 044090 115 AKIKVIGVGGGGSNAVNRMIES-----SM----------------TG------------VEFWIVNTDAQAMKVSPV--- 158 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~-----~~----------------~~------------ve~iavNTD~~~L~~s~v--- 158 (279)
..|.-+=+||||+-|--++.++ +. ++ ...+.||-.+..++...-
T Consensus 3 ~eIiTlQ~GQCGNQiG~efwk~L~~Ehgis~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~~ 82 (448)
T KOG1374|consen 3 REIITLQLGQCGNQIGFEFWKQLCLEHGISPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSPY 82 (448)
T ss_pred ceeEEEeccccccHHHHHHHHHHHHhcCCCcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccchh
Confidence 4577788999999988776654 11 00 112556666555554211
Q ss_pred ---CCCCeEEcCcccccCCCCCCCchhhH----HHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHH
Q 044090 159 ---IPENRLQIGCELTRGLGAGGNPSVGM----NAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKS 228 (279)
Q Consensus 159 ---~a~~ri~iG~~~t~G~GaG~np~~G~----eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake 228 (279)
..+.++.+- -.|.|||+||+-|+ +.-++.++.|++.+++|| +|+++|++.||||||.+..+.|.+++
T Consensus 83 s~l~n~eni~~s---~~ggGAGNNWA~GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~d 159 (448)
T KOG1374|consen 83 SGLYNPENIFLS---DHGGGAGNNWASGYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLND 159 (448)
T ss_pred hcccCccceEEe---cCCCCcccccccccccchhhHHHHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHH
Confidence 122334432 24779999999865 555666777788888999 89999999999999999999998876
Q ss_pred -cC---CcEEEEEccCCCC---chhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 229 -MG---ILTVGIATVPFCF---EGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 229 -~g---i~tvaIvtlPf~~---Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
|. +.+++|+ |... |-...+||..++|++|.+++|+++|+||.+|.+||
T Consensus 160 rypkkliqtysVf--Pn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria 214 (448)
T KOG1374|consen 160 RYPKKLVQTYSVF--PNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIA 214 (448)
T ss_pred hchhhhheeeeec--cCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHH
Confidence 54 6778885 6654 44679999999999999999999999999999886
No 25
>PF13809 Tubulin_2: Tubulin like
Probab=99.25 E-value=9e-11 Score=111.92 Aligned_cols=146 Identities=25% Similarity=0.339 Sum_probs=99.1
Q ss_pred EEEeeCcchHHHHHHHHHc--------C-CCcceEEEEeCcHH-------------HHhcC-CCCC---C---C------
Q 044090 118 KVIGVGGGGSNAVNRMIES--------S-MTGVEFWIVNTDAQ-------------AMKVS-PVIP---E---N------ 162 (279)
Q Consensus 118 ~VIGIGgaG~NIVd~l~~~--------~-~~~ve~iavNTD~~-------------~L~~s-~v~a---~---~------ 162 (279)
+|||+||.|..++.+|.++ + ++.++|++||||.. .+... .... . .
T Consensus 1 lvIGlGGTG~~~l~~l~~~l~~~~~~~~~~~~v~Fl~iDt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (345)
T PF13809_consen 1 LVIGLGGTGGKILARLRRRLREELGGLELPPCVQFLYIDTDENSGLADGRSHGVGISLDEIEKLYAFITSSDLSQRLDRL 80 (345)
T ss_pred CEEEeCchHHHHHHHHHHHHHHHhcCcCCCCcEEEEEEEcCcccccccccccccccccCchhhcccccchhhHHHHHhcc
Confidence 4899999999999988765 1 34599999999988 11110 0000 0 0
Q ss_pred ------eEEcCccc-----ccCCCCCCCchhhHHHHHHHHHHH----HHHhc---------CC-C---EEEEEeecCCCc
Q 044090 163 ------RLQIGCEL-----TRGLGAGGNPSVGMNAANESKVAI----EEAIS---------GA-D---MIFVTAGMGGGT 214 (279)
Q Consensus 163 ------ri~iG~~~-----t~G~GaG~np~~G~eaa~e~~e~I----~~~Le---------~~-D---~vfIvAGLGGGT 214 (279)
+-++..+. .-..|||.-+.+|+.+.-...++| +++++ .. + .|||++||+|||
T Consensus 81 ~~~~~i~~W~p~~~~~~~~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGT 160 (345)
T PF13809_consen 81 SAYPEIAEWLPPELERNNTPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGT 160 (345)
T ss_pred cCCchhhhcCCccccccCCchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCcc
Confidence 01222222 124689999999987764444444 33333 11 1 799999999999
Q ss_pred ccCHHHHHHHHHHH-c------CCcEEEEEccCCCCch-----hHHHHHHHHHHHHHHHhC
Q 044090 215 GTGAAPVIAGIAKS-M------GILTVGIATVPFCFEG-----RRRAIQAQEGVANLRNNV 263 (279)
Q Consensus 215 GSG~aPvIaeiake-~------gi~tvaIvtlPf~~Eg-----~~r~~NA~~gL~~L~e~a 263 (279)
|||+..-|+.+++. + ...+.+++.+|..|++ .+...||..+|.+|..+.
T Consensus 161 GSG~~lDia~~lr~~~~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~~~~ 221 (345)
T PF13809_consen 161 GSGMFLDIAYLLRDILKQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELDYLM 221 (345)
T ss_pred chhHHHHHHHHHHHHhhcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHHHHh
Confidence 99998888877765 2 3777888889986654 466779999999998543
No 26
>KOG1376 consensus Alpha tubulin [Cytoskeleton]
Probab=98.57 E-value=1.6e-08 Score=97.49 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=93.4
Q ss_pred ccCCCCCCCchh-----hHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHH-HHHcC---CcEEEEEc
Q 044090 171 TRGLGAGGNPSV-----GMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGI-AKSMG---ILTVGIAT 238 (279)
Q Consensus 171 t~G~GaG~np~~-----G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaei-ake~g---i~tvaIvt 238 (279)
+....+.+|+++ |+|.++...++|++..+.|. .|++++++|||||||.+..+.+. ..++| .+-+++.+
T Consensus 93 tGkedAannyArghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lmerls~~~GKkskl~fsiyp 172 (407)
T KOG1376|consen 93 TGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLMERLSVDYGKKSKLEFSIYP 172 (407)
T ss_pred CcchHhhhhHHhhhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhhhhhhhhhhhcccccccccc
Confidence 334467788877 56788999999999999888 68999999999999998877765 45666 56688888
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhhC
Q 044090 239 VPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279 (279)
Q Consensus 239 lPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~~ 279 (279)
.|-.++....+||+...-+...+++|+.+.+||++++++|.
T Consensus 173 apqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr 213 (407)
T KOG1376|consen 173 APQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICR 213 (407)
T ss_pred CccccccccCCccccccceeecccCcceeecCchhhcchhh
Confidence 88888889999999999999999999999999999999983
No 27
>KOG1375 consensus Beta tubulin [Cytoskeleton]
Probab=98.47 E-value=5.7e-08 Score=93.60 Aligned_cols=76 Identities=22% Similarity=0.315 Sum_probs=66.6
Q ss_pred EEEEEeecCCCcccCHHHHHHHHHHH-cC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 203 MIFVTAGMGGGTGTGAAPVIAGIAKS-MG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 203 ~vfIvAGLGGGTGSG~aPvIaeiake-~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
.++++|+||||||+|....+.+.+++ +. ..++++++.|. .....++|||..++.+|.+++|.++++||++|++||
T Consensus 77 gfql~hs~gggtGsg~gt~l~~k~~ee~~d~i~~~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic 155 (369)
T KOG1375|consen 77 GFQLTHSLGGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDIC 155 (369)
T ss_pred cceeeeeccCccccCcchhhHHHHHHhccchhcccccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHH
Confidence 88999999999999999888766654 43 56677877777 777899999999999999999999999999999998
Q ss_pred C
Q 044090 279 S 279 (279)
Q Consensus 279 ~ 279 (279)
.
T Consensus 156 ~ 156 (369)
T KOG1375|consen 156 F 156 (369)
T ss_pred h
Confidence 4
No 28
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=98.42 E-value=1.4e-06 Score=87.70 Aligned_cols=98 Identities=15% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHH-HcC---CcEEEEEccCCC----
Q 044090 174 LGAGGNPSVGMNAANESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAK-SMG---ILTVGIATVPFC---- 242 (279)
Q Consensus 174 ~GaG~np~~G~eaa~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiak-e~g---i~tvaIvtlPf~---- 242 (279)
.|.|.+.-.+.+..++..++|++.+|.|| +|+|+++++||| +|.+..+++.++ |++ +.++++.+.|..
T Consensus 121 fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~ 199 (493)
T cd06060 121 FGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASS 199 (493)
T ss_pred cccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCcc-cchHHHHHHHHHHhcCccceeEEEeCCCccccccc
Confidence 34455544555677889999999999999 889999999999 999999988766 566 333333333321
Q ss_pred CchhHHHHHHHHHHHHHHHhCCEEEEEech
Q 044090 243 FEGRRRAIQAQEGVANLRNNVDTLIVIPND 272 (279)
Q Consensus 243 ~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd 272 (279)
.+...++||+..++..|.+++|.+++|.-.
T Consensus 200 ~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~ 229 (493)
T cd06060 200 DKNSIRVLNTALGLAQLSEHSSLFVPLSLS 229 (493)
T ss_pred chhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 145689999999999999999999988754
No 29
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.46 E-value=0.093 Score=50.53 Aligned_cols=45 Identities=13% Similarity=0.276 Sum_probs=35.0
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+....+.+|.|||+|+.|+.++..|...+. -++..||-|.-++.+
T Consensus 19 Q~~L~~~~VlIiG~GglGs~va~~La~aGv--g~i~lvD~D~ve~sN 63 (338)
T PRK12475 19 QRKIREKHVLIVGAGALGAANAEALVRAGI--GKLTIADRDYVEWSN 63 (338)
T ss_pred HHhhcCCcEEEECCCHHHHHHHHHHHHcCC--CEEEEEcCCcccccc
Confidence 455677899999999999999999998643 155668888765544
No 30
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.1 Score=47.25 Aligned_cols=99 Identities=25% Similarity=0.368 Sum_probs=67.7
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc-CCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-SPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA 193 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~-s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~ 193 (279)
|++.|||+|..|..++..|.+. +.+.++|+.|.+..+. .....+-....|.. . +.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~---g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~--------t-----------~~~~ 58 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE---GHNVVLIDRDEERVEEFLADELDTHVVIGDA--------T-----------DEDV 58 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC---CCceEEEEcCHHHHHHHhhhhcceEEEEecC--------C-----------CHHH
Confidence 6899999999999999999884 5688899999888766 11001233444322 1 2344
Q ss_pred HHHH-hcCCCEEEEEeecCCCcccCH-HHHHHHHHHH-cCCcE-EEEEccCC
Q 044090 194 IEEA-ISGADMIFVTAGMGGGTGTGA-APVIAGIAKS-MGILT-VGIATVPF 241 (279)
Q Consensus 194 I~~~-Le~~D~vfIvAGLGGGTGSG~-aPvIaeiake-~gi~t-vaIvtlPf 241 (279)
++++ ++++|+|+.+ ||... ..+++.++++ ++++. ++-+..|.
T Consensus 59 L~~agi~~aD~vva~------t~~d~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 59 LEEAGIDDADAVVAA------TGNDEVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred HHhcCCCcCCEEEEe------eCCCHHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 5555 7899999884 77754 4556777755 88554 66666664
No 31
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.08 E-value=0.13 Score=45.69 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
+....+.||.|||+||.|+.++..|...+.. ++..+|-|.-..
T Consensus 16 q~kl~~~~VlviG~GglGs~ia~~La~~Gv~--~i~lvD~d~ve~ 58 (202)
T TIGR02356 16 QQRLLNSHVLIIGAGGLGSPAALYLAGAGVG--TIVIVDDDHVDL 58 (202)
T ss_pred HHHhcCCCEEEECCCHHHHHHHHHHHHcCCC--eEEEecCCEEcc
Confidence 3456778999999999999999999886532 566677765443
No 32
>PRK06153 hypothetical protein; Provisional
Probab=94.80 E-value=0.26 Score=48.83 Aligned_cols=42 Identities=21% Similarity=0.386 Sum_probs=33.6
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
..+.+|.|||+||.|+.+++.|.+.+. -++..||-|.-...+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GV--geI~LVD~D~Ve~SN 215 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPV--REIHLFDGDDFLQHN 215 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCC--CEEEEECCCEecccc
Confidence 456799999999999999999999764 367778887555443
No 33
>PF14881 Tubulin_3: Tubulin domain
Probab=94.78 E-value=0.2 Score=44.29 Aligned_cols=92 Identities=11% Similarity=0.063 Sum_probs=61.3
Q ss_pred CchhhHHHHH------HHHH-HHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHHHHHcCCcEE--EEEccCCCC-ch
Q 044090 179 NPSVGMNAAN------ESKV-AIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV--GIATVPFCF-EG 245 (279)
Q Consensus 179 np~~G~eaa~------e~~e-~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaeiake~gi~tv--aIvtlPf~~-Eg 245 (279)
++..|.+..+ +..+ .|+..+|.|| +|.|+..+-+|=|.=++-+|-.+..||+...+ +....+... ..
T Consensus 42 ~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwgGfas~~Le~L~DEy~k~~i~~~~~~~~~~~~~~ 121 (180)
T PF14881_consen 42 TFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWGGFASSLLEHLRDEYPKKPIIWVWGLRDPSSSSR 121 (180)
T ss_pred cccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchHhHHHHHHHHHHHHcCCCceEEeecCCCcccccc
Confidence 3555665543 3344 3999999999 88999988888754445555556668886554 222121111 11
Q ss_pred ------hHHHHHHHHHHHHHHHhCCEEEEEe
Q 044090 246 ------RRRAIQAQEGVANLRNNVDTLIVIP 270 (279)
Q Consensus 246 ------~~r~~NA~~gL~~L~e~aD~vIv~D 270 (279)
..|..|...++.+|.++++.++.+.
T Consensus 122 ~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~ 152 (180)
T PF14881_consen 122 DAPRKRRLRLLNKALSLSELSEQSSLFVPLS 152 (180)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhCCEEEecC
Confidence 2356799999999999999999886
No 34
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=94.75 E-value=0.13 Score=43.21 Aligned_cols=103 Identities=22% Similarity=0.303 Sum_probs=62.0
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc-------CCCCCCCeEEcCcccccCCCCCCCchhhHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV-------SPVIPENRLQIGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~-------s~v~a~~ri~iG~~~t~G~GaG~np~~G~ea 186 (279)
|||.|||. |..|..++-.|...++ .-|...+|.+.+.++. ...+......+...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~----------------- 62 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG----------------- 62 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES-----------------
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcccceeeehhhhhhhhhcccccccccc-----------------
Confidence 79999999 9999999999888743 5567788987443221 11011122332211
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH---cC-CcEEEEEccCCC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS---MG-ILTVGIATVPFC 242 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake---~g-i~tvaIvtlPf~ 242 (279)
..+.+++||.|++++|.--.-|.-- ++++.+++++ +. --.+.+++-|-.
T Consensus 63 -------~~~~~~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd 122 (141)
T PF00056_consen 63 -------DYEALKDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD 122 (141)
T ss_dssp -------SGGGGTTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH
T ss_pred -------cccccccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH
Confidence 1356789999999998754333322 4555444433 33 345667777863
No 35
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.58 E-value=0.26 Score=47.06 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
+..||.|||.|..|..++..+...++ .+.+.+|.|.+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl--~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNL--GDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEeCCCc
Confidence 34799999999999999998877655 35666777655
No 36
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.40 E-value=0.38 Score=46.41 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=36.0
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s 156 (279)
+......||.|||+|+-|+.++..|.+.+.. ++..||.|.-.+.+.
T Consensus 19 Q~~L~~~~VlVvG~GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL 64 (339)
T PRK07688 19 QQKLREKHVLIIGAGALGTANAEMLVRAGVG--KVTIVDRDYVEWSNL 64 (339)
T ss_pred HHHhcCCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCccCHHHc
Confidence 4556778999999999999999999886432 567789887666553
No 37
>PRK05086 malate dehydrogenase; Provisional
Probab=94.17 E-value=0.46 Score=45.12 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=26.1
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
|||.|||. |+.|..++-.|........++.+++.+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~ 36 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIA 36 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecC
Confidence 79999999 999999998875533334566666653
No 38
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.11 E-value=0.4 Score=43.95 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=34.5
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+....+.||.|||+||-|+.++..|...+.. ++..+|-|.-.+.+
T Consensus 27 Q~~L~~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sN 71 (245)
T PRK05690 27 QEKLKAARVLVVGLGGLGCAASQYLAAAGVG--TLTLVDFDTVSLSN 71 (245)
T ss_pred HHHhcCCeEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEECcch
Confidence 3456778999999999999999999986542 45667887555443
No 39
>PRK06223 malate dehydrogenase; Reviewed
Probab=93.92 E-value=0.43 Score=44.42 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=29.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
+||.|||.|..|..++..+...+.. +.+.+|.|.+.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~--ev~L~D~~~~~~ 39 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELG--DVVLFDIVEGVP 39 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCe--EEEEEECCCchh
Confidence 6999999999999999998876542 888888765543
No 40
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=93.87 E-value=0.6 Score=39.10 Aligned_cols=96 Identities=23% Similarity=0.226 Sum_probs=63.2
Q ss_pred EEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHH
Q 044090 117 IKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIE 195 (279)
Q Consensus 117 I~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~ 195 (279)
|.|+|. |..|..++..|++.+ .+..++--+.+.+... ..-.+..+. + .+.+.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~R~~~~~~~~---~~~~~~~~d-----------~--------~d~~~~~ 55 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALVRSPSKAEDS---PGVEIIQGD-----------L--------FDPDSVK 55 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEESSGGGHHHC---TTEEEEESC-----------T--------TCHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEecCchhcccc---cccccceee-----------e--------hhhhhhh
Confidence 689997 999999999999965 6777776666655541 122232221 1 2347788
Q ss_pred HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEc
Q 044090 196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIAT 238 (279)
Q Consensus 196 ~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvt 238 (279)
+++.++|.||.+.+-...- .-.+..+++.+++.++.-+.++.
T Consensus 56 ~al~~~d~vi~~~~~~~~~-~~~~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 56 AALKGADAVIHAAGPPPKD-VDAAKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp HHHTTSSEEEECCHSTTTH-HHHHHHHHHHHHHTTSSEEEEEE
T ss_pred hhhhhcchhhhhhhhhccc-ccccccccccccccccccceeee
Confidence 9999999999988554442 22234556667777766555544
No 41
>PRK08328 hypothetical protein; Provisional
Probab=93.77 E-value=0.58 Score=42.51 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=33.6
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+....+.+|.|||+||.|+.++..|...+.. ++..+|-|.-.+.+
T Consensus 22 q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg--~i~lvD~D~ve~sN 66 (231)
T PRK08328 22 QEKLKKAKVAVVGVGGLGSPVAYYLAAAGVG--RILLIDEQTPELSN 66 (231)
T ss_pred HHHHhCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCccChhh
Confidence 3445677999999999999999999987643 34557777655544
No 42
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=93.64 E-value=1.5 Score=39.26 Aligned_cols=123 Identities=16% Similarity=0.117 Sum_probs=71.0
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHc------CCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIES------SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMN 185 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~------~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~e 185 (279)
.++.||.++|+|+.|...-+.-.+. ...+...+++.+|..-+..... +. |
T Consensus 39 ~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~an--------------------d~--~-- 94 (196)
T PRK10886 39 LNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIAN--------------------DR--L-- 94 (196)
T ss_pred HcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhc--------------------cc--c--
Confidence 3457999999999888754333221 1245666667667665443210 00 0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCE
Q 044090 186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDT 265 (279)
Q Consensus 186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~ 265 (279)
..+-...+++..+..-|.+|++.. .|.| -..-.+++++|+.|+++++|...|.+ -|.++...+|.
T Consensus 95 ~~~~f~~ql~~~~~~gDvli~iS~-SG~s--~~v~~a~~~Ak~~G~~vI~IT~~~~s------------~l~~l~~~~D~ 159 (196)
T PRK10886 95 HDEVYAKQVRALGHAGDVLLAIST-RGNS--RDIVKAVEAAVTRDMTIVALTGYDGG------------ELAGLLGPQDV 159 (196)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEeC-CCCC--HHHHHHHHHHHHCCCEEEEEeCCCCC------------hhhhccccCCE
Confidence 122334556666677788877644 2222 22344467889999999999755441 22333334677
Q ss_pred EEEEechH
Q 044090 266 LIVIPNDK 273 (279)
Q Consensus 266 vIv~DNd~ 273 (279)
+|.++.+.
T Consensus 160 ~i~ip~~~ 167 (196)
T PRK10886 160 EIRIPSHR 167 (196)
T ss_pred EEEcCCCc
Confidence 77777654
No 43
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.23 E-value=0.93 Score=43.10 Aligned_cols=36 Identities=19% Similarity=0.309 Sum_probs=28.8
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
.++||.|||.|..|..++..+...++ .+...+|.|.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~--~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL--GDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC--CeEEEEECCC
Confidence 56799999999999999988877654 4666778764
No 44
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.07 E-value=0.21 Score=50.98 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=35.1
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC-cHHHHhc
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMKV 155 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT-D~~~L~~ 155 (279)
...||+|||.||.||-.+..|...+...++.+=+|| |...|++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNR 54 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNR 54 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhh
Confidence 467999999999999999999998888888766666 6655554
No 45
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.04 E-value=1.1 Score=36.88 Aligned_cols=36 Identities=19% Similarity=0.433 Sum_probs=28.5
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
||.|||+|+.|+.++..|...+. -++..+|-|.-..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv--~~i~ivD~d~v~~ 36 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV--GKITLIDFDTVEL 36 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEEEcCCCcCc
Confidence 68999999999999999998654 2566778765443
No 46
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=92.86 E-value=3.4 Score=36.23 Aligned_cols=99 Identities=14% Similarity=0.216 Sum_probs=63.1
Q ss_pred EEEEee-CcchHHHHHHHHHcCCCcceEEEE--eCcHH---HHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090 117 IKVIGV-GGGGSNAVNRMIESSMTGVEFWIV--NTDAQ---AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 117 I~VIGI-GgaG~NIVd~l~~~~~~~ve~iav--NTD~~---~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
|.|+|. |.-|..+++.|.+ .+.+..++ |.+.. .|... ...+..+. + .+
T Consensus 1 I~V~GatG~~G~~v~~~L~~---~~~~V~~l~R~~~~~~~~~l~~~----g~~vv~~d-----------~--------~~ 54 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS---AGFSVRALVRDPSSDRAQQLQAL----GAEVVEAD-----------Y--------DD 54 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH---TTGCEEEEESSSHHHHHHHHHHT----TTEEEES------------T--------T-
T ss_pred CEEECCccHHHHHHHHHHHh---CCCCcEEEEeccchhhhhhhhcc----cceEeecc-----------c--------CC
Confidence 789997 9999999999999 45555554 33222 22222 12232211 1 25
Q ss_pred HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 191 KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
.+.+.++++++|.||++-+.-.........-+++.+++.|+.-|....+..
T Consensus 55 ~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~ 105 (233)
T PF05368_consen 55 PESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA 105 (233)
T ss_dssp HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred HHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence 688999999999998775543344456778889999998877665433333
No 47
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.62 E-value=0.86 Score=44.07 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=34.5
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+....+.++.|||+||.|+.++..|...+.. ++..+|-|.-.+.+
T Consensus 23 q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg--~i~lvD~D~ve~sN 67 (355)
T PRK05597 23 QQSLFDAKVAVIGAGGLGSPALLYLAGAGVG--HITIIDDDTVDLSN 67 (355)
T ss_pred HHHHhCCeEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEEcccc
Confidence 3456678999999999999999999886543 35567887655544
No 48
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=92.58 E-value=1.1 Score=40.95 Aligned_cols=88 Identities=26% Similarity=0.461 Sum_probs=54.7
Q ss_pred EEEEee-CcchHHHHHHHHHcCC-CcceEEEEeCcHHHHhcCC-----CCC---CCeEEcCcccccCCCCCCCchhhHHH
Q 044090 117 IKVIGV-GGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMKVSP-----VIP---ENRLQIGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 117 I~VIGI-GgaG~NIVd~l~~~~~-~~ve~iavNTD~~~L~~s~-----v~a---~~ri~iG~~~t~G~GaG~np~~G~ea 186 (279)
|.|||. |..|..++-.+...+. ...+...+|.|.+.++... ... ..++...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~------------------- 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSIT------------------- 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEEC-------------------
Confidence 579999 8889999988877642 2367788888764443310 000 1122211
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCCCcccCH-------HHHHHHHHHH
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGA-------APVIAGIAKS 228 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~-------aPvIaeiake 228 (279)
+...+.+++||.|+++++-++..|-+- +|++.+++++
T Consensus 62 -----~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~ 105 (263)
T cd00650 62 -----DDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDN 105 (263)
T ss_pred -----CchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 113566789999999998888877544 3555555544
No 49
>PRK08223 hypothetical protein; Validated
Probab=92.31 E-value=1.4 Score=41.92 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=35.2
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s 156 (279)
+....+.+|.|||+||-|+.++..|...+.. ++..+|-|.-++.+.
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG--~i~lvD~D~Ve~SNL 67 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARLGIG--KFTIADFDVFELRNF 67 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHhCCC--eEEEEeCCCcchhcc
Confidence 3446678999999999999999999997653 345678876665543
No 50
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.86 E-value=0.31 Score=47.72 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=31.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC-cHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT-D~~~L~ 154 (279)
-||+|||.||-||-++..|.-.+..+++.+-+|| |...|+
T Consensus 41 ~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLN 81 (422)
T KOG2015|consen 41 CKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLN 81 (422)
T ss_pred CcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccch
Confidence 6999999999999999999888877777666665 544443
No 51
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=91.51 E-value=1.4 Score=42.50 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=59.9
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCC-----------Cchh--
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGG-----------NPSV-- 182 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~-----------np~~-- 182 (279)
|++|||+||-|+.++..|...+.. ++..+|-|.-+..+. .+.+++..+.. ..|..+ ||.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg--~ItlvD~D~Ve~sNL----~RQ~L~~~~D~-~iGk~Ka~aaa~~L~~iNP~v~v 73 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVR--HITFVDSGKVSYSNP----VRQSLFTFEDC-KGGKPKAEAAAERLKEIFPSIDA 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEeccccC----Ccccccccchh-hcCccHHHHHHHHHHHHCCCcEE
Confidence 689999999999999999987653 344566665444332 12222222110 001000 0000
Q ss_pred ---------------hH--HHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHH-HHHHHcCCcEEE
Q 044090 183 ---------------GM--NAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIA-GIAKSMGILTVG 235 (279)
Q Consensus 183 ---------------G~--eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIa-eiake~gi~tva 235 (279)
.. +-.++..+.+.+.++++|.||. .|.+=.+-.+. .++..++++.+.
T Consensus 74 ~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d------~tDn~esR~L~~~~~~~~~k~~I~ 138 (307)
T cd01486 74 TGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFL------LTDSRESRWLPTLLSAAKNKLVIN 138 (307)
T ss_pred EEeeeeccccccccccccccccccCHHHHHHHHhhCCEEEE------CCCCHHHHHHHHHHHHHhCCcEEE
Confidence 00 0012345567788889998887 46665565554 566777777775
No 52
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.30 E-value=2.1 Score=40.75 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=27.8
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
.+||.|||.|..|..++-.|...++ ..++..+|.+
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~-~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGL-ADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence 5699999999999999998876643 4567777763
No 53
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.90 E-value=0.56 Score=38.89 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=32.0
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
+..+.++.|||.||+|..++.+|.+.+.+ +...+|=+.+..+
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~--~i~i~nRt~~ra~ 50 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAK--EITIVNRTPERAE 50 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSS--EEEEEESSHHHHH
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCC--EEEEEECCHHHHH
Confidence 45678999999999999999999986432 2566776655443
No 54
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.69 E-value=1.8 Score=42.01 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=61.4
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI 194 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I 194 (279)
|+|.|+|.|..|..++..|.+. +.++++++.|.+.++...-....++..|.. . ..+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~---g~~v~vid~~~~~~~~~~~~~~~~~~~gd~--------~-----------~~~~l 58 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE---NNDVTVIDTDEERLRRLQDRLDVRTVVGNG--------S-----------SPDVL 58 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHhhcCEEEEEeCC--------C-----------CHHHH
Confidence 6899999999999999999874 568899999888766531101123333311 1 12334
Q ss_pred HHH-hcCCCEEEEEeecCCCcccCHHHHHHHHHHHc-C-CcEEEEEccC
Q 044090 195 EEA-ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM-G-ILTVGIATVP 240 (279)
Q Consensus 195 ~~~-Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~-g-i~tvaIvtlP 240 (279)
+++ ++++|.++++.. .-...-.++..+|++ + ..+++.+..+
T Consensus 59 ~~~~~~~a~~vi~~~~-----~~~~n~~~~~~~r~~~~~~~ii~~~~~~ 102 (453)
T PRK09496 59 REAGAEDADLLIAVTD-----SDETNMVACQIAKSLFGAPTTIARVRNP 102 (453)
T ss_pred HHcCCCcCCEEEEecC-----ChHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 444 789998887632 123344566778875 5 4445544333
No 55
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=90.68 E-value=2.9 Score=41.87 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=49.7
Q ss_pred ceEEEEeeCcchH-HHHHHHHHc--CCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 115 AKIKVIGVGGGGS-NAVNRMIES--SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 115 ~kI~VIGIGgaG~-NIVd~l~~~--~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
|||.|||-|..=. .++.-|++. .+..-+.+.+|.|.+.|+.....+. ++ .+-.|. ++. -+.-
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~-~~------~~~~g~--~~~------v~~T 65 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVK-IL------FKENYP--EIK------FVYT 65 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHH-HH------HHhhCC--CeE------EEEE
Confidence 7999999776521 367777766 3667888999999988875211000 00 000000 000 0011
Q ss_pred HHHHHHhcCCCEEEEEeecCC
Q 044090 192 VAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGG 212 (279)
...+++|++||.||...-.||
T Consensus 66 tdr~eAl~gADfVi~~irvGg 86 (437)
T cd05298 66 TDPEEAFTDADFVFAQIRVGG 86 (437)
T ss_pred CCHHHHhCCCCEEEEEeeeCC
Confidence 235789999999998887776
No 56
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.66 E-value=4.6 Score=41.47 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCc-hhhHHHHHH
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNP-SVGMNAANE 189 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np-~~G~eaa~e 189 (279)
.....|+.|+|.|.+|...+..+... ++..++++.+...++.......+-+.+... ..|.+.|+.. ....+..+.
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~l---GA~V~v~d~~~~rle~a~~lGa~~v~v~~~-e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSL---GAIVRAFDTRPEVKEQVQSMGAEFLELDFK-EEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHcCCeEEecccc-ccccccccceeecCHHHHHH
Confidence 34568999999999999999888774 456778888877766532111122333321 1233333322 223444555
Q ss_pred HHHHHHHHhcCCCEEEEEeecCC
Q 044090 190 SKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
..+.+.+.++++|.+|-++-.-|
T Consensus 237 ~~~~~~e~~~~~DIVI~TalipG 259 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALIPG 259 (511)
T ss_pred HHHHHHHHhCCCCEEEECcccCC
Confidence 56667778889999966665555
No 57
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.53 E-value=0.75 Score=41.34 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=33.0
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
......+|.|||+||.|+.++..|...+.. ++..+|-|.-++.
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg--~i~lvD~D~ve~s 66 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVG--NLKLVDFDVVEPS 66 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCEeccc
Confidence 345677999999999999999999986542 4667888754443
No 58
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=90.52 E-value=0.83 Score=40.21 Aligned_cols=77 Identities=30% Similarity=0.414 Sum_probs=43.4
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH---
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK--- 191 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~--- 191 (279)
|||.|||+|-.|.-.+-.|.+. |.+.+.+|.|.+.++... ..+..+. .|.+. ++..+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~---G~~V~g~D~~~~~v~~l~---~g~~p~~-----------E~~l~-~ll~~~~~~~ 62 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK---GHQVIGVDIDEEKVEALN---NGELPIY-----------EPGLD-ELLKENVSAG 62 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT---TSEEEEE-S-HHHHHHHH---TTSSSS------------CTTHH-HHHHHHHHTT
T ss_pred CEEEEECCCcchHHHHHHHHhC---CCEEEEEeCChHHHHHHh---hcccccc-----------ccchh-hhhccccccc
Confidence 7999999999999999998884 689999999988665531 1222221 12222 2222222
Q ss_pred -----HHHHHHhcCCCEEEEEee
Q 044090 192 -----VAIEEAISGADMIFVTAG 209 (279)
Q Consensus 192 -----e~I~~~Le~~D~vfIvAG 209 (279)
..+.+.++++|.+||+-+
T Consensus 63 ~l~~t~~~~~ai~~adv~~I~Vp 85 (185)
T PF03721_consen 63 RLRATTDIEEAIKDADVVFICVP 85 (185)
T ss_dssp SEEEESEHHHHHHH-SEEEE---
T ss_pred cchhhhhhhhhhhccceEEEecC
Confidence 235666789999998774
No 59
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.50 E-value=1.2 Score=39.55 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=80.2
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
....+.+|.|||+||.|+.++..|...+.. ++..+|.|.-..... .+.+++..+.. ..|.. +...+++.
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg--~i~lvD~d~ve~snl----~rq~~~~~~~~---~iG~~--Ka~~~~~~ 83 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGID--SITIVDHRLVSTEDL----GSNFFLDAEVS---NSGMN--RAAASYEF 83 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEECCcCChhcC----cccEecccchh---hcCch--HHHHHHHH
Confidence 345678999999999999999999987653 356788876554432 22333332100 01111 11111110
Q ss_pred -------------------HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE--------EccCCC
Q 044090 190 -------------------SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI--------ATVPFC 242 (279)
Q Consensus 190 -------------------~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI--------vtlPf~ 242 (279)
..+.+.+.++.+|.|+.+.. + ....-.+.+++++.+++.+.. +...+.
T Consensus 84 L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d----~-~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~p 158 (198)
T cd01485 84 LQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEE----N-YERTAKVNDVCRKHHIPFISCATYGLIGYAFFDFP 158 (198)
T ss_pred HHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCC----C-HHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEchh
Confidence 02234455678887765411 1 223345567888876555432 223333
Q ss_pred CchhHHHHHHHHHHHHHHHh---CCEEEEEec
Q 044090 243 FEGRRRAIQAQEGVANLRNN---VDTLIVIPN 271 (279)
Q Consensus 243 ~Eg~~r~~NA~~gL~~L~e~---aD~vIv~DN 271 (279)
.-+..-...|.+.|+-|... ...++++|.
T Consensus 159 ~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~ 190 (198)
T cd01485 159 IAAFLGGVVAQEAIKSISGKFTPLNNLYIYDG 190 (198)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCccCcEEEEEC
Confidence 33445567788888877543 244666664
No 60
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.39 E-value=1.3 Score=36.29 Aligned_cols=107 Identities=20% Similarity=0.253 Sum_probs=59.5
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHH---HHH
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA---NES 190 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa---~e~ 190 (279)
+.||.|+|+|+-|+.++..|...+. -++..+|-|.-...... +.+++..+. .|. .+...+. .+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv--~~i~lvD~d~v~~~nl~----r~~~~~~~~-----vG~--~Ka~~~~~~l~~~ 68 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV--GKITLVDDDIVEPSNLN----RQFLYTEED-----VGK--NKAEAAKERLQEI 68 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT--SEEEEEESSBB-GGGCC----TCTTS-GGG-----TTS--BHHHHHHHHHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC--CceeecCCcceeecccc----ccccccccc-----chh--HHHHHHHHHHHHh
Confidence 4699999999999999999999754 35667887655544421 111222111 111 1111111 111
Q ss_pred --------------HHHHHHHhcCCCEEEEEeecCCCcccC-HHHHHHHHHHHcCCcEEEEEcc
Q 044090 191 --------------KVAIEEAISGADMIFVTAGMGGGTGTG-AAPVIAGIAKSMGILTVGIATV 239 (279)
Q Consensus 191 --------------~e~I~~~Le~~D~vfIvAGLGGGTGSG-~aPvIaeiake~gi~tvaIvtl 239 (279)
.+.+.+.++++|.||.+ +.+- .-..|.+++++.+++.+..-+.
T Consensus 69 np~~~v~~~~~~~~~~~~~~~~~~~d~vi~~------~d~~~~~~~l~~~~~~~~~p~i~~~~~ 126 (135)
T PF00899_consen 69 NPDVEVEAIPEKIDEENIEELLKDYDIVIDC------VDSLAARLLLNEICREYGIPFIDAGVN 126 (135)
T ss_dssp STTSEEEEEESHCSHHHHHHHHHTSSEEEEE------SSSHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred cCceeeeeeecccccccccccccCCCEEEEe------cCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence 23445566788877654 3342 3345667888888877766443
No 61
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.36 E-value=4.1 Score=38.76 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=27.7
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
..+||.|||.|+.|..++-.|...+. --+...+|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~-~~el~L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGI-ADELVIIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence 45699999999999999998887643 2356677764
No 62
>PLN00106 malate dehydrogenase
Probab=90.27 E-value=3 Score=40.14 Aligned_cols=83 Identities=23% Similarity=0.366 Sum_probs=49.3
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH---HHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~---~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa 187 (279)
....||.|||. |..|..++..|..++.- -++..+|-+. +.|+..+..+..++. + . .
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~-~el~L~Di~~~~g~a~Dl~~~~~~~~i~-~--~------~---------- 75 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPLV-SELHLYDIANTPGVAADVSHINTPAQVR-G--F------L---------- 75 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCC-CEEEEEecCCCCeeEchhhhCCcCceEE-E--E------e----------
Confidence 34469999999 99999999988766532 2556666543 112211111111221 0 0 0
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCCccc
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGGTGT 216 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTGS 216 (279)
.-+.+.+.+.++|.|++++|.....|.
T Consensus 76 --~~~d~~~~l~~aDiVVitAG~~~~~g~ 102 (323)
T PLN00106 76 --GDDQLGDALKGADLVIIPAGVPRKPGM 102 (323)
T ss_pred --CCCCHHHHcCCCCEEEEeCCCCCCCCC
Confidence 011245678899999999998766553
No 63
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=90.17 E-value=7 Score=34.50 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=38.0
Q ss_pred HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271 (279)
Q Consensus 193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN 271 (279)
.+...+..-|.+|++.. .|- |.-...+++.+|+.|+++++|...+. ..|.+++|.+|.++.
T Consensus 104 ~~~~~~~~~Dv~I~iS~-SG~--t~~~i~~~~~ak~~g~~iI~iT~~~~---------------s~l~~~ad~~l~~~~ 164 (192)
T PRK00414 104 YVEAVGREGDVLLGIST-SGN--SGNIIKAIEAARAKGMKVITLTGKDG---------------GKMAGLADIEIRVPH 164 (192)
T ss_pred HHHHhCCCCCEEEEEeC-CCC--CHHHHHHHHHHHHCCCeEEEEeCCCC---------------ChhHHhCCEEEEeCC
Confidence 34444566677777643 222 22344556788999999999975543 234456777777766
No 64
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.97 E-value=0.92 Score=41.58 Aligned_cols=46 Identities=13% Similarity=0.325 Sum_probs=35.2
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s 156 (279)
+......||.|+|+||.|+.++..|...+.. ++..+|-|.-.+.+.
T Consensus 19 q~~L~~~~VlvvG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL 64 (240)
T TIGR02355 19 QEALKASRVLIVGLGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNL 64 (240)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCc
Confidence 3456678999999999999999999987543 455678876665543
No 65
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=89.96 E-value=0.83 Score=43.47 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=30.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
||+|||+||-||-++..|...+.. ++..+|-|.-++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg--~I~IvD~D~Ve~SN 38 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFR--NIHVIDMDTIDVSN 38 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecccc
Confidence 689999999999999999987653 44567877666554
No 66
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=89.92 E-value=0.89 Score=41.80 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=29.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
||.|||+||.|+.++..|...+.. ++..+|-|.-++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg--~i~ivD~D~Ve~sN 38 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFG--QIHVIDMDTIDVSN 38 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEEcchh
Confidence 689999999999999999987643 34556776655544
No 67
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=89.68 E-value=0.8 Score=40.79 Aligned_cols=42 Identities=17% Similarity=0.347 Sum_probs=30.5
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcce-EEEEe-CcHHHHh
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVE-FWIVN-TDAQAMK 154 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve-~iavN-TD~~~L~ 154 (279)
..+||.|||.|..|..++..+.+.+...++ .+++| .+.+.++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~ 46 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLD 46 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHH
Confidence 457999999999999999999877544454 55565 3444443
No 68
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.66 E-value=5.1 Score=38.16 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=26.2
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
||.|||.|..|..++-.|...++ .-+++.+|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGL-FSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence 79999999999999999887654 2366667763
No 69
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.38 E-value=3 Score=38.91 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=27.0
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
|.|||.|..|..++..+...++. +.+.+|.|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~--eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELG--DVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCc--EEEEEeCCCc
Confidence 57999999999999988776543 8888888754
No 70
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=89.13 E-value=0.78 Score=38.94 Aligned_cols=38 Identities=24% Similarity=0.410 Sum_probs=29.7
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+||.+||+|-.|..|+.+|.+. +.+.++.|-+.+.++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~---g~~v~~~d~~~~~~~~ 39 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA---GYEVTVYDRSPEKAEA 39 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT---TTEEEEEESSHHHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc---CCeEEeeccchhhhhh
Confidence 6899999999999999999885 5677888887665543
No 71
>PLN02602 lactate dehydrogenase
Probab=88.99 E-value=1.8 Score=42.14 Aligned_cols=35 Identities=23% Similarity=0.488 Sum_probs=27.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
.||.|||.|..|..++-.|...++ .-++..+|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDL-ADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCC
Confidence 699999999999999998887654 33666777643
No 72
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=88.69 E-value=2.1 Score=42.63 Aligned_cols=84 Identities=21% Similarity=0.421 Sum_probs=51.7
Q ss_pred ceEEEEeeCcchH-HHHHHHHHc--CCCcceEEEEeCc-HHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090 115 AKIKVIGVGGGGS-NAVNRMIES--SMTGVEFWIVNTD-AQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 115 ~kI~VIGIGgaG~-NIVd~l~~~--~~~~ve~iavNTD-~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
+||.|||-|..-. .++..|+.. .+..-+.+.+|.| .+.|+.....+. ++ + +-.|. ++. -+.
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~-~~-~-----~~~~~--~~~------v~~ 65 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAK-RM-V-----KKAGL--PIK------VHL 65 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHH-HH-H-----HhhCC--CeE------EEE
Confidence 6999999888755 477777764 3566888999999 787754210000 00 0 00000 000 001
Q ss_pred HHHHHHHhcCCCEEEEEeecCCC
Q 044090 191 KVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
-...+++++++|.||++...||-
T Consensus 66 t~d~~~al~gadfVi~~~~vg~~ 88 (419)
T cd05296 66 TTDRREALEGADFVFTQIRVGGL 88 (419)
T ss_pred eCCHHHHhCCCCEEEEEEeeCCc
Confidence 12368899999999999999884
No 73
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=88.66 E-value=0.79 Score=42.58 Aligned_cols=44 Identities=16% Similarity=0.339 Sum_probs=34.7
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCC--------CcceEEEEeCcHHHHhc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSM--------TGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~--------~~ve~iavNTD~~~L~~ 155 (279)
....||.|||+||-||.++..|.+.+. .+.++..+|-|.-+..+
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sN 60 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEAN 60 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccch
Confidence 467899999999999999999998641 14577888887665544
No 74
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=88.41 E-value=10 Score=32.00 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=28.7
Q ss_pred HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
++...+..-|.+|++.. .|- +...-.+++.+|+.|+++++|...|.
T Consensus 72 ~~~~~~~~~D~~i~iS~-sG~--t~~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 72 QVEALGQKGDVLLGIST-SGN--SKNVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred HHHHhCCCCCEEEEEcC-CCC--CHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 34445566677777643 222 22344456788999999999965443
No 75
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=88.34 E-value=5.3 Score=37.50 Aligned_cols=36 Identities=19% Similarity=0.443 Sum_probs=27.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
||.|||.|+.|..++..|...+. ..+++.+|-+.+.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~-~~ei~l~D~~~~~ 37 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGI-ADELVLIDINEEK 37 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCcch
Confidence 89999999999999999987643 1366777765443
No 76
>PTZ00325 malate dehydrogenase; Provisional
Probab=88.32 E-value=4.5 Score=38.92 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=25.9
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
...||.|||. |..|..++..|...+. ..+...+|-
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di 42 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDI 42 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEec
Confidence 3449999999 9999999988875432 345666665
No 77
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=88.16 E-value=4.9 Score=38.51 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=59.2
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCC-CCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHH
Q 044090 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVI-PENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIE 195 (279)
Q Consensus 117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~-a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~ 195 (279)
|.|+|.|..|.-++..|.++.... ++++.+-+.+.++..... ...++..- ++--.+.+.+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~-~v~va~r~~~~~~~~~~~~~~~~~~~~-----------------~~d~~~~~~l~ 62 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFE-EVTVADRNPEKAERLAEKLLGDRVEAV-----------------QVDVNDPESLA 62 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE--EEEEEESSHHHHHHHHT--TTTTEEEE-----------------E--TTTHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCC-cEEEEECCHHHHHHHHhhccccceeEE-----------------EEecCCHHHHH
Confidence 789999999999999998764211 777788888876553110 01122111 11112455689
Q ss_pred HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEE
Q 044090 196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (279)
Q Consensus 196 ~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tva 235 (279)
++++++|.|+-+++-- ..+.|++.+-+.++..+-
T Consensus 63 ~~~~~~dvVin~~gp~------~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 63 ELLRGCDVVINCAGPF------FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp HHHTTSSEEEE-SSGG------GHHHHHHHHHHHT-EEEE
T ss_pred HHHhcCCEEEECCccc------hhHHHHHHHHHhCCCeec
Confidence 9999999888765432 567788888888877665
No 78
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=88.00 E-value=0.68 Score=37.75 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=59.4
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI 194 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I 194 (279)
.||+|+|=|..+.+++..+.+. ++++++|||+.+......-.+++-+.++... +...+. ..++|
T Consensus 3 kkvLIanrGeia~r~~ra~r~~---Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~---------~~~~yl----~~e~I 66 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALREL---GIETVAVNSNPDTVSTHVDMADEAYFEPPGP---------SPESYL----NIEAI 66 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHT---TSEEEEEEEGGGTTGHHHHHSSEEEEEESSS---------GGGTTT----SHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHh---CCcceeccCchhcccccccccccceecCcch---------hhhhhc----cHHHH
Confidence 5899999999999999999884 7899999996654332111246666665211 111121 22333
Q ss_pred HHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEE
Q 044090 195 EEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (279)
Q Consensus 195 ~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tv 234 (279)
.+.+ +++|.++ +|=+.---.+.+++...+.|+..+
T Consensus 67 ~~ia~~~g~~~i~-----pGyg~lse~~~fa~~~~~~gi~fi 103 (110)
T PF00289_consen 67 IDIARKEGADAIH-----PGYGFLSENAEFAEACEDAGIIFI 103 (110)
T ss_dssp HHHHHHTTESEEE-----STSSTTTTHHHHHHHHHHTT-EES
T ss_pred hhHhhhhcCcccc-----cccchhHHHHHHHHHHHHCCCEEE
Confidence 3333 2666543 444444567888888777776544
No 79
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=87.98 E-value=1 Score=47.41 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=32.6
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.....|++|||+||-||.++..|...+.. ++..||-|.-++.+
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg--~ItlVD~D~Ve~SN 377 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVR--HITFVDNGKVSYSN 377 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCC--eEEEEcCCEECCCc
Confidence 35588999999999999999999997653 34456776555443
No 80
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.59 E-value=8.6 Score=36.42 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=27.1
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
|||.|||. |..|..++..|...+. ..+.+++|.+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~ 35 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRP 35 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECc
Confidence 69999998 9999999999988754 2256677764
No 81
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.57 E-value=0.6 Score=41.63 Aligned_cols=42 Identities=24% Similarity=0.517 Sum_probs=32.8
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcc-eEEEEeCc---HHHHh
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGV-EFWIVNTD---AQAMK 154 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~v-e~iavNTD---~~~L~ 154 (279)
......+|.|||+|+.|+.|+..|.+. |+ ++..+|.| ..+|.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D~ve~sNL~ 62 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA---GIGKLILVDFDVVEPSNLN 62 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCCEEcccccc
Confidence 345678999999999999999999886 45 46678888 44444
No 82
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.44 E-value=1.3 Score=39.84 Aligned_cols=43 Identities=23% Similarity=0.434 Sum_probs=33.0
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
....+.+|.|||+||.|+.++..|...+.. ++..+|-|.-...
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg--~i~lvD~D~ve~s 59 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVG--KLGLVDDDVVELS 59 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCC--EEEEEcCCEEcCc
Confidence 456678999999999999999999987542 4566777655443
No 83
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=87.40 E-value=1.2 Score=43.63 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=34.0
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
....+.||.|||+||.|+.++..|...+.. ++..+|-|.-.+.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg--~i~lvD~D~ve~sN 81 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVG--TLGIVEFDVVDESN 81 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCCEecCcc
Confidence 445678999999999999999999987653 45567877655544
No 84
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=87.31 E-value=1.2 Score=41.72 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=26.6
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
..+|||.|||.|..|..++..|.+.+ .+..+.|.
T Consensus 2 ~~~m~I~iiG~G~~G~~lA~~l~~~G---~~V~~~~r 35 (308)
T PRK14619 2 TQPKTIAILGAGAWGSTLAGLASANG---HRVRVWSR 35 (308)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCC---CEEEEEeC
Confidence 35689999999999999999998864 34444554
No 85
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.12 E-value=6.5 Score=37.65 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=26.7
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
|||.|||. |..|..++-.|...++ ..+.+.+|.+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecC
Confidence 69999999 9999999988876654 3466667664
No 86
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=86.98 E-value=2 Score=41.30 Aligned_cols=39 Identities=23% Similarity=0.466 Sum_probs=29.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s 156 (279)
||.|||+||-|+.++..|...+.. ++..+|-|.-.+.+.
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg--~ItIvD~D~Ve~sNL 39 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFG--EIHIIDLDTIDLSNL 39 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCC--eEEEEcCCCcchhhc
Confidence 689999999999999999987653 344567776665543
No 87
>PRK07411 hypothetical protein; Validated
Probab=86.82 E-value=1.7 Score=42.68 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=39.1
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~ 168 (279)
+......+|.|||+||-|+.++..|...+.. ++..+|-|.-.+.+. .++++++.
T Consensus 33 q~~L~~~~VlivG~GGlG~~va~~La~~Gvg--~l~lvD~D~ve~sNL----~RQ~l~~~ 86 (390)
T PRK07411 33 QKRLKAASVLCIGTGGLGSPLLLYLAAAGIG--RIGIVDFDVVDSSNL----QRQVIHGT 86 (390)
T ss_pred HHHHhcCcEEEECCCHHHHHHHHHHHHcCCC--EEEEECCCEeccccc----CcCcccCh
Confidence 4557788999999999999999999987543 345678776666553 23455444
No 88
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=86.75 E-value=6 Score=38.23 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=26.1
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
+||.|||.|+.|...+-.|....+ +-|+..+|-+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~-~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGL-GSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccc-cceEEEEEcc
Confidence 589999999999999988854433 3366666665
No 89
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=86.51 E-value=5.7 Score=38.01 Aligned_cols=78 Identities=23% Similarity=0.347 Sum_probs=45.9
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH---HHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~---~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
||.|||. |..|..++-.|...+. ..+.+.+|.+. ++|+..+.....++.- . .+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~a~g~a~DL~~~~~~~~i~~-~-------~~~------------- 58 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAGAAGVAADLSHIPTAASVKG-F-------SGE------------- 58 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCCCcEEEchhhcCCcCceEEE-e-------cCC-------------
Confidence 7999999 9999999998876542 34666676543 1111111111112210 0 000
Q ss_pred HHHHHHhcCCCEEEEEeecCCCcc
Q 044090 192 VAIEEAISGADMIFVTAGMGGGTG 215 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGGGTG 215 (279)
+...+.++++|.|++++|..-..|
T Consensus 59 ~~~~~~~~daDivvitaG~~~~~g 82 (312)
T TIGR01772 59 EGLENALKGADVVVIPAGVPRKPG 82 (312)
T ss_pred CchHHHcCCCCEEEEeCCCCCCCC
Confidence 113457889999999998876655
No 90
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=86.28 E-value=7.8 Score=37.24 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=28.8
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeC
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~----ve~iavNT 148 (279)
+..||.|||. |..|.+++-.|...++-+ .+...+|.
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 4679999999 999999999998776422 37777776
No 91
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=86.14 E-value=2 Score=38.01 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEE
Q 044090 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVI 269 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~ 269 (279)
..++|.++++. ..-+++.|+.-|.-.=++-++.++-++++-+.++++ +||...+..-....++-+..|.+.+|.++++
T Consensus 31 L~~~i~~lie~-G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v-~Pf~~q~~~W~~~~q~~y~~il~~aD~v~~v 108 (177)
T PF06908_consen 31 LKKQIIELIEE-GVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALV-LPFENQGNNWNEANQERYQSILEQADFVVVV 108 (177)
T ss_dssp HHHHHHHHHTT-T--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEE-ESSB-TTTTS-HHHHHHHHHHHHH-SEEEES
T ss_pred HHHHHHHHHHC-CCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEE-EcccchhhcCCHHHHHHHHHHHHhCCEEEEc
Confidence 44557777764 333444444444444445555555556664444433 7997666554556677789999999999988
Q ss_pred ech
Q 044090 270 PND 272 (279)
Q Consensus 270 DNd 272 (279)
..+
T Consensus 109 s~~ 111 (177)
T PF06908_consen 109 SER 111 (177)
T ss_dssp SSS
T ss_pred cCC
Confidence 764
No 92
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=85.97 E-value=4 Score=40.11 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=32.5
Q ss_pred ccCCCCCCCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 103 LRQSSVPNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 103 ~~~~~~~~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
+..++......++||.|||. |..|..+++.|.++ +.++..++-.+..+
T Consensus 27 ~~~~~~~~~~~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~sa 75 (381)
T PLN02968 27 SSASSSVKSEEKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKA 75 (381)
T ss_pred ccCCCccccccccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhc
Confidence 33333333356779999999 77888888877776 56777677655443
No 93
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=85.86 E-value=2.1 Score=41.83 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=35.3
Q ss_pred CCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 108 ~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.+....+.+|.|||+||.|+.++..|...+. -++..+|-|.-.+.+
T Consensus 35 ~q~~l~~~~VliiG~GglG~~v~~~La~~Gv--g~i~ivD~D~ve~sN 80 (370)
T PRK05600 35 QQERLHNARVLVIGAGGLGCPAMQSLASAGV--GTITLIDDDTVDVSN 80 (370)
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHcCC--CEEEEEeCCEEcccc
Confidence 3456777899999999999999999998654 245667887655544
No 94
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=85.85 E-value=1.5 Score=45.95 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=33.3
Q ss_pred CCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 108 ~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
.+..+...||.|||.|+.|+++|-.|++.+...+. +++||..
T Consensus 123 rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~--~vd~D~v 164 (637)
T TIGR03693 123 KFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFH--AIVTDAE 164 (637)
T ss_pred hhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEE--EEecccc
Confidence 44557899999999999999999999998765444 5666544
No 95
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.70 E-value=1.8 Score=38.38 Aligned_cols=145 Identities=16% Similarity=0.188 Sum_probs=77.0
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
......||.|||+|+-|+.++..|...+.. ++..+|.|.-+.... .+.+++..+. .|. .+.+.+++.
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg--~i~lvD~d~ve~snL----~rqfl~~~~d-----iG~--~Ka~a~~~~ 83 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIG--SLTILDDRTVTEEDL----GAQFLIPAED-----LGQ--NRAEASLER 83 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCC--EEEEEECCcccHhhC----CCCccccHHH-----cCc--hHHHHHHHH
Confidence 345677999999999999999999986542 345678875544332 1233333221 111 111111111
Q ss_pred H----------------HHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCC----------C
Q 044090 190 S----------------KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC----------F 243 (279)
Q Consensus 190 ~----------------~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~----------~ 243 (279)
. .+...+.++++|.|+.+.. . -...-.+.+++++.+++.+..-+.-+. .
T Consensus 84 L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~----~-~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~~~p~ 158 (197)
T cd01492 84 LRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATEL----S-RAELVKINELCRKLGVKFYATGVHGLFGFVFADLLAPV 158 (197)
T ss_pred HHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCC----C-HHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEeccccH
Confidence 1 0112344578887776421 1 122344567778876555443322221 1
Q ss_pred chhHHHHHHHHHHHHHHHhC---CEEEEEech
Q 044090 244 EGRRRAIQAQEGVANLRNNV---DTLIVIPND 272 (279)
Q Consensus 244 Eg~~r~~NA~~gL~~L~e~a---D~vIv~DNd 272 (279)
-+..-...|.+.++-|...- ..++.+|-.
T Consensus 159 ~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~ 190 (197)
T cd01492 159 AAVVGGILAQDVINALSKRESPLNNFFVFDGE 190 (197)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCcEEEEECC
Confidence 23445667788888777542 335556543
No 96
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.70 E-value=2.5 Score=39.80 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=34.4
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.......+|.|||+||.|+.++..|.+.+.. ++..+|-|.-...+
T Consensus 25 ~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg--~itLiD~D~V~~sN 69 (268)
T PRK15116 25 LQLFADAHICVVGIGGVGSWAAEALARTGIG--AITLIDMDDVCVTN 69 (268)
T ss_pred HHHhcCCCEEEECcCHHHHHHHHHHHHcCCC--EEEEEeCCEecccc
Confidence 3456678999999999999999999997643 45567777655443
No 97
>PRK04148 hypothetical protein; Provisional
Probab=85.66 E-value=2.1 Score=36.50 Aligned_cols=38 Identities=18% Similarity=0.389 Sum_probs=32.5
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+.|+.+||+| .|.+++..|.+ .+.+.+++|.|..+.+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~---~G~~ViaIDi~~~aV~~ 54 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKE---SGFDVIVIDINEKAVEK 54 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHH---CCCEEEEEECCHHHHHH
Confidence 4789999999 99999999886 36799999999887764
No 98
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=85.62 E-value=7 Score=37.70 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=37.7
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc--------CCCCCCCeEEcCccc
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV--------SPVIPENRLQIGCEL 170 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~--------s~v~a~~ri~iG~~~ 170 (279)
+....||.|+|+|+.|..++-.++.+++. -|...+|-+...|+. +......++..+.++
T Consensus 17 ~~~~~KItVVG~G~VGmAca~siL~k~La-del~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy 83 (332)
T KOG1495|consen 17 EFKHNKITVVGVGQVGMACAISILLKGLA-DELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY 83 (332)
T ss_pred cccCceEEEEccchHHHHHHHHHHHhhhh-hceEEEecCcchhhhhhhhhccccccccCCceEecCcc
Confidence 34578999999999999999888887652 344555554432222 222234566666543
No 99
>PRK13936 phosphoheptose isomerase; Provisional
Probab=85.47 E-value=24 Score=31.19 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccC
Q 044090 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP 240 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlP 240 (279)
+++...+..-|.+|++..-| . |--...+++.+|+.|.++++|...+
T Consensus 103 ~~~a~~~~~~Dv~i~iS~sG-~--t~~~~~~~~~ak~~g~~iI~IT~~~ 148 (197)
T PRK13936 103 KQVRALGQPGDVLLAISTSG-N--SANVIQAIQAAHEREMHVVALTGRD 148 (197)
T ss_pred HHHHHhCCCCCEEEEEeCCC-C--cHHHHHHHHHHHHCCCeEEEEECCC
Confidence 33445556778777764322 2 1223334677889999999996533
No 100
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.44 E-value=1.7 Score=39.83 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=31.8
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
..+.+|.|||+||.|+.++..|.+.+. -++..+|-|.-...
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GV--g~i~LvD~D~V~~s 49 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGV--GKLTLIDFDVVCVS 49 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCC--CEEEEECCCEECch
Confidence 456799999999999999999998754 25566777654443
No 101
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.11 E-value=9.9 Score=36.44 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=27.5
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeC
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNT 148 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~----~ve~iavNT 148 (279)
..||.|||. |..|..++-.|...++- ..+...+|.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 359999999 99999999998876542 246677776
No 102
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=84.93 E-value=24 Score=34.83 Aligned_cols=39 Identities=21% Similarity=0.206 Sum_probs=33.2
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.+||.|||+|-.|..++-.|.+. +.+.+.+|.|.+.++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~---G~~V~~~D~~~~~v~~ 41 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR---QKQVIGVDINQHAVDT 41 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC---CCEEEEEeCCHHHHHH
Confidence 47999999999999999999885 5678889998876664
No 103
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.91 E-value=3.8 Score=38.68 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=28.0
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
|||.|||.|..|..++-.|...++ ..+.+.+|.+.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~-~~ev~l~D~~~~ 36 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGL-ASEIVLVDINKA 36 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CCEEEEEECCch
Confidence 689999999999999998887643 245667776543
No 104
>CHL00194 ycf39 Ycf39; Provisional
Probab=84.70 E-value=15 Score=33.92 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=24.8
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
|||.|+|. |-.|..++.+|.+++ .+..++.-+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g---~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEG---YQVRCLVRN 33 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC---CeEEEEEcC
Confidence 68999995 999999999999864 455555433
No 105
>PRK15076 alpha-galactosidase; Provisional
Probab=84.65 E-value=3.3 Score=41.30 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=47.3
Q ss_pred ceEEEEeeCcchHH--HHHHHH-HcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSN--AVNRMI-ESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 115 ~kI~VIGIGgaG~N--IVd~l~-~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
+||.|||.|..|.- ++..+. ...+.+.+.+.+|.|.+.++.... . +-... .-.+. +..+ ..-
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~----l--~~~~~-~~~~~--~~~i------~~t 66 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEI----V--ARKLA-ESLGA--SAKI------TAT 66 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHH----H--HHHHH-HhcCC--CeEE------EEE
Confidence 69999999987744 333554 234556789999999877763100 0 00000 00000 0000 001
Q ss_pred HHHHHHhcCCCEEEEEeecCC
Q 044090 192 VAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGG 212 (279)
....+++++||.||++++.||
T Consensus 67 tD~~eal~dADfVv~ti~vg~ 87 (431)
T PRK15076 67 TDRREALQGADYVINAIQVGG 87 (431)
T ss_pred CCHHHHhCCCCEEeEeeeeCC
Confidence 124678899999999999985
No 106
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=84.46 E-value=9.8 Score=34.97 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=26.6
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEE-EeCcH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWI-VNTDA 150 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~ia-vNTD~ 150 (279)
+||.|||+ |..|..++..+.+. ++++..+ ++.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCC
Confidence 79999999 99999999877654 4678765 56554
No 107
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=84.40 E-value=2.1 Score=32.54 Aligned_cols=40 Identities=28% Similarity=0.388 Sum_probs=30.7
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCcHHHHhc
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NTD~~~L~~ 155 (279)
||.|||.|..|..++..|.+.+....+.+.+ +-+.+.+..
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~ 41 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAE 41 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHH
Confidence 7999999999999999999987544666645 666665543
No 108
>PRK05442 malate dehydrogenase; Provisional
Probab=84.23 E-value=10 Score=36.51 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=27.7
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeC
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~----ve~iavNT 148 (279)
+..||.|||. |..|..++-.|...++-+ .++..+|.
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 4569999999 999999998887765422 46777776
No 109
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.21 E-value=3.2 Score=36.03 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=27.3
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
|+.|||+|+.|+.++..|.+.+.. ++..+|-|.-
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg--~i~lvD~D~v 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVG--NLKLVDFDVV 34 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCCEE
Confidence 689999999999999999886532 3666788763
No 110
>PRK06545 prephenate dehydrogenase; Validated
Probab=83.58 E-value=1.6 Score=41.98 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=27.3
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
+|.|||.|-.|..++..|.+.+. .+..+..|-+...+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~~~~~~ 38 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDPSAAQL 38 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCCCHHHH
Confidence 79999999999999999988653 34445555444433
No 111
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=83.58 E-value=2.5 Score=40.14 Aligned_cols=44 Identities=14% Similarity=0.259 Sum_probs=33.0
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
....+.+++|+|+||.|+-|+..|...+.. ++..+|.|.-.+..
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg--~itI~D~d~ve~sn 58 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVK--SVTLHDTKPCSWSD 58 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCCccchhh
Confidence 345677999999999999999999986553 23457877655543
No 112
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=83.55 E-value=7.5 Score=37.70 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=62.3
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCC-CCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPENRLQIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v-~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
...++|.|+|.|..|..+++.|.+ .+.++++++.|.+.++...- ..+-.+..|.. .++
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~---~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~--------~~~---------- 287 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEK---EGYSVKLIERDPERAEELAEELPNTLVLHGDG--------TDQ---------- 287 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHCCCCeEEECCC--------CCH----------
Confidence 357899999999999999999987 46788999999876654210 01122333321 111
Q ss_pred HHHHH-HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCc-EEEEEccCC
Q 044090 191 KVAIE-EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL-TVGIATVPF 241 (279)
Q Consensus 191 ~e~I~-~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~-tvaIvtlPf 241 (279)
+.++ ..++.+|.|+++.. . ....-.++.++++++.. +++.+..|.
T Consensus 288 -~~L~~~~~~~a~~vi~~~~---~--~~~n~~~~~~~~~~~~~~ii~~~~~~~ 334 (453)
T PRK09496 288 -ELLEEEGIDEADAFIALTN---D--DEANILSSLLAKRLGAKKVIALVNRPA 334 (453)
T ss_pred -HHHHhcCCccCCEEEECCC---C--cHHHHHHHHHHHHhCCCeEEEEECCcc
Confidence 2222 24678898876432 1 12334445667887643 455555554
No 113
>PRK13937 phosphoheptose isomerase; Provisional
Probab=83.39 E-value=30 Score=30.21 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=53.4
Q ss_pred CCCceEEEEeeCcchHHH---HHHHHH-cC--CCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090 112 NNEAKIKVIGVGGGGSNA---VNRMIE-SS--MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMN 185 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NI---Vd~l~~-~~--~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~e 185 (279)
.+..||-++|.|..+... +..+.. .. ..+...+++..|...+.... .+ + +.
T Consensus 36 ~~a~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~----------~d----------~--~~- 92 (188)
T PRK13937 36 ANGGKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIG----------ND----------Y--GF- 92 (188)
T ss_pred HCCCEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHh----------cc----------C--CH-
Confidence 356689999999887643 223331 21 23455555555655432210 00 0 00
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
.......+...+..-|.+|++. -.|-| --.--+++.+|+.|+++++|...|.
T Consensus 93 -~~~~~~~~~~~~~~~Dl~i~iS-~sG~t--~~~~~~~~~ak~~g~~~I~iT~~~~ 144 (188)
T PRK13937 93 -ERVFSRQVEALGRPGDVLIGIS-TSGNS--PNVLAALEKARELGMKTIGLTGRDG 144 (188)
T ss_pred -HHHHHHHHHhhCCCCCEEEEEe-CCCCc--HHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 0011223334455667776663 33322 2333346778889999999975443
No 114
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=83.13 E-value=12 Score=35.24 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=25.0
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
|.|||.|..|..++-.+...++ --++..+|.+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~-~~el~l~D~~~ 33 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGL-ASELVLVDVNE 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence 5799999999999988776543 23677778754
No 115
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=83.00 E-value=3.8 Score=41.41 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=34.7
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s 156 (279)
|||.|||.|-.|.-.+-.|.+.+ .+++.+.+|.|.+.++..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g-~g~~V~gvD~~~~~v~~l 42 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKC-PDIEVVVVDISVPRIDAW 42 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHH
Confidence 79999999999999998887754 267888999998887764
No 116
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=82.97 E-value=2.6 Score=37.45 Aligned_cols=43 Identities=16% Similarity=0.377 Sum_probs=35.3
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.+..++++.|+|+|..|..++.+|.+. +.+.++.|.+.+.+..
T Consensus 24 ~~l~gk~v~I~G~G~vG~~~A~~L~~~---G~~Vvv~D~~~~~~~~ 66 (200)
T cd01075 24 DSLEGKTVAVQGLGKVGYKLAEHLLEE---GAKLIVADINEEAVAR 66 (200)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEcCCHHHHHH
Confidence 346778999999999999999999884 6688888888776554
No 117
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=82.82 E-value=38 Score=31.52 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=30.0
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQA 152 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~ 152 (279)
+..+||.|||+|..|..++..|.+. ..+++..+ .|.+.+.
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~-~~~~el~aV~dr~~~~ 44 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRG-LPGLTLSAVAVRDPQR 44 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhc-CCCeEEEEEECCCHHH
Confidence 4568999999999999999988763 34677654 4666544
No 118
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=82.68 E-value=3.8 Score=41.20 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=31.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCC---CcceEEEEeCcHHHHhc
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSM---TGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~---~~ve~iavNTD~~~L~~ 155 (279)
|+.|||+||.||-++..|...+. .+-++..+|-|.-++.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SN 43 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSN 43 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccc
Confidence 68999999999999999998764 12366677877666554
No 119
>PRK13938 phosphoheptose isomerase; Provisional
Probab=82.45 E-value=36 Score=30.41 Aligned_cols=102 Identities=15% Similarity=0.204 Sum_probs=53.0
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcC------CCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESS------MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMN 185 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~------~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~e 185 (279)
.++.||.++|+|+.|....+.-.+-- .+....+++..|...+... + ++. .
T Consensus 43 ~~g~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~----------~----------nd~----~ 98 (196)
T PRK13938 43 RAGARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAV----------A----------NDY----D 98 (196)
T ss_pred HCCCEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHh----------h----------ccc----c
Confidence 35679999999999887654443321 1123334443343322211 0 000 0
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccC
Q 044090 186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP 240 (279)
Q Consensus 186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlP 240 (279)
..+-...++...+..-|++|++ +..|-| --.-.+++.+|+.|+++++|...|
T Consensus 99 ~~~~~~~~~~~~~~~~DllI~i-S~SG~t--~~vi~a~~~Ak~~G~~vI~iT~~~ 150 (196)
T PRK13938 99 YDTVFARALEGSARPGDTLFAI-STSGNS--MSVLRAAKTARELGVTVVAMTGES 150 (196)
T ss_pred HHHHHHHHHHhcCCCCCEEEEE-cCCCCC--HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 1122234445555666766665 333332 122334577888999999997544
No 120
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=82.18 E-value=8.1 Score=37.23 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=27.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
+||.|+|.|..|-++++.+.++ ++++..+++.
T Consensus 2 ikVaI~G~GrIGr~va~al~~~--~d~eLvav~d 33 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQ--PDMELVGVAK 33 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcC--CCcEEEEEEC
Confidence 6999999999999999888764 6789888764
No 121
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.18 E-value=3 Score=40.39 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=32.9
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
......+|.|||+||.|+.++..|...+.. ++..+|-|.-.+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg--~i~lvD~d~v~~s 173 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVG--TLGIVDHDVVDRS 173 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCEecch
Confidence 346778999999999999999999887643 4566777754433
No 122
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=82.17 E-value=6.8 Score=38.23 Aligned_cols=38 Identities=29% Similarity=0.311 Sum_probs=31.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
|||.|||+|-.|.-++..|.+. +.+.+.+|.|.+.++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~---G~~V~~~d~~~~~v~~ 38 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL---GHEVTGVDIDQEKVDK 38 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc---CCeEEEEECCHHHHHH
Confidence 5899999999999999999874 5577888888776654
No 123
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=82.11 E-value=5.2 Score=39.61 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=47.5
Q ss_pred ceEEEEeeCcchHH--HHHHHHHc-CCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSN--AVNRMIES-SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 115 ~kI~VIGIGgaG~N--IVd~l~~~-~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
+||.|||.|..|.. ++..+... ...+.+.+.+|.|.+.++.... .+ .......+...+. ..-
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~----~~---~~~~~~~~~~~~I--------~~t 65 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEI----LA---KKIVEELGAPLKI--------EAT 65 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHH----HH---HHHHHhcCCCeEE--------EEe
Confidence 58999999987876 33345544 4566788889998877654210 00 0000000000000 001
Q ss_pred HHHHHHhcCCCEEEEEeecCC
Q 044090 192 VAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGG 212 (279)
..+++++++||+|+++...||
T Consensus 66 tD~~eal~~AD~Vi~ai~~~~ 86 (423)
T cd05297 66 TDRREALDGADFVINTIQVGG 86 (423)
T ss_pred CCHHHHhcCCCEEEEeeEecC
Confidence 224678899999999998654
No 124
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=81.93 E-value=20 Score=33.89 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=26.8
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
+||.|||.|..|.-++-.+...+.- +.+.+|.+
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~--~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELA--DLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCC--eEEEEeCC
Confidence 6999999999999999988876542 66677763
No 125
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=81.88 E-value=23 Score=31.46 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=28.3
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
...++|+|+|. |+.|..++.+|.+. +.+.+++.-+...+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~---g~~V~~~~R~~~~~ 54 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAK---GFAVKAGVRDVDKA 54 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhC---CCEEEEEecCHHHH
Confidence 34579999996 88999999999885 45666654444433
No 126
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=81.80 E-value=11 Score=37.39 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCc
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTG 140 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ 140 (279)
+..||.|||. |..|.+++-.|...++-+
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~ 71 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFG 71 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccC
Confidence 3589999999 999999999998887643
No 127
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.68 E-value=7.1 Score=38.18 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=24.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
.|+.|||+|++|-.++..|.+. |.+....|.
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~---G~~V~~~D~ 31 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQ---GWEVVVSDR 31 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHC---CCEEEEECC
Confidence 4799999999999998877764 566666664
No 128
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=81.58 E-value=5.7 Score=35.45 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=27.2
Q ss_pred eEEEEeeCcchHH-HHHHHHHc--CCCcceEEEEeCcHHHHhc
Q 044090 116 KIKVIGVGGGGSN-AVNRMIES--SMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGIGgaG~N-IVd~l~~~--~~~~ve~iavNTD~~~L~~ 155 (279)
||.|||-|..-.- .+..++.. .+...+++.+|.|.+.|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~ 43 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEI 43 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHH
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHH
Confidence 7999997776554 33333333 3566788899999998875
No 129
>PRK14851 hypothetical protein; Provisional
Probab=81.54 E-value=3.4 Score=43.70 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=34.8
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+....+.+|.|||+||.|+.++..|...+. -++..+|-|.-.+.+
T Consensus 38 Q~kL~~~~VlIvG~GGlGs~va~~Lar~GV--G~l~LvD~D~ve~sN 82 (679)
T PRK14851 38 QERLAEAKVAIPGMGGVGGVHLITMVRTGI--GRFHIADFDQFEPVN 82 (679)
T ss_pred HHHHhcCeEEEECcCHHHHHHHHHHHHhCC--CeEEEEcCCEecccc
Confidence 345678899999999999999999999765 245667776655544
No 130
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=81.51 E-value=4.9 Score=40.83 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=34.6
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s 156 (279)
+-.+.|+|.|.-|.+++++|.++ +.++++||.|.+..+..
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~---g~~vvvId~d~~~~~~~ 456 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA---GIPLVVIETSRTRVDEL 456 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC---CCCEEEEECCHHHHHHH
Confidence 56899999999999999999874 56899999998876653
No 131
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=81.37 E-value=5.5 Score=39.03 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=31.7
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCC------CcceEEEEeCc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSM------TGVEFWIVNTD 149 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~------~~ve~iavNTD 149 (279)
.+++||.|||-|.-|.-++..+.+... ..+..|..|.+
T Consensus 9 ~~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~ 52 (365)
T PTZ00345 9 CGPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEI 52 (365)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEeccc
Confidence 567899999999999999999987642 36788888875
No 132
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=81.35 E-value=13 Score=36.71 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=25.8
Q ss_pred CCCceEEEEeeCcchHH-HHHHHHHcCCCcceEEEEeC
Q 044090 112 NNEAKIKVIGVGGGGSN-AVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~N-IVd~l~~~~~~~ve~iavNT 148 (279)
....+|.|||+|+.|.. ++..|.+ .|.+..+.|.
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~---~G~~V~~~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLN---LGYKVSGSDL 39 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHh---CCCeEEEECC
Confidence 34568999999999999 5666665 4677777665
No 133
>PRK08818 prephenate dehydrogenase; Provisional
Probab=81.29 E-value=2.5 Score=41.45 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=27.9
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
..++|.|||+ |..|+.++..|.+. .+.+.+.+|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~--~~~~V~g~D~ 37 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTR--MQLEVIGHDP 37 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhc--CCCEEEEEcC
Confidence 3579999999 99999999999875 2667777765
No 134
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=81.15 E-value=2.3 Score=36.41 Aligned_cols=110 Identities=18% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEc--CcccccCCCCCCCchhhHHHHH
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQI--GCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~i--G~~~t~G~GaG~np~~G~eaa~ 188 (279)
.....|+.|+|.|-+|..++.-+... +++...++.....++.......+.+.+ +.... +...+.+.-.+..+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~l---Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~ 90 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGL---GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLE---RKDFDKADYYEHPE 90 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHT---T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTT---SB-CCHHHCHHHCC
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHC---CCEEEeccCCHHHHHhhhcccCceEEEccccccc---ccccchhhhhHHHH
Confidence 34568999999999999999988874 678888998776665421111233333 12111 11134444445555
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHH--HHHHHcC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIA--GIAKSMG 230 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIa--eiake~g 230 (279)
.....+.+.+..+|.|+..+-.-|.- +|.|. +.+++|.
T Consensus 91 ~~~~~f~~~i~~~d~vI~~~~~~~~~----~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 91 SYESNFAEFIAPADIVIGNGLYWGKR----APRLVTEEMVKSMK 130 (168)
T ss_dssp HHHHHHHHHHHH-SEEEEHHHBTTSS-------SBEHHHHHTSS
T ss_pred HhHHHHHHHHhhCcEEeeecccCCCC----CCEEEEhHHhhccC
Confidence 66677888999999887755444433 67664 6777775
No 135
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=81.15 E-value=11 Score=36.79 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
..+.++.|+|.|+.|..++..|.+. |.+.++++.+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~---G~~V~~~d~~ 37 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKL---GAKVILTDEK 37 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 3567999999999999999999885 5676777664
No 136
>PRK08507 prephenate dehydrogenase; Validated
Probab=80.96 E-value=2.7 Score=38.53 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.4
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
|||.|||.|..|..++..|.+.+. ..+.+++|.+.+.++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~-~~~v~~~d~~~~~~~ 39 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGL-ISKVYGYDHNELHLK 39 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHH
Confidence 589999999999999999987653 346777888776654
No 137
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=80.96 E-value=4.6 Score=37.98 Aligned_cols=41 Identities=10% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
+..+.++.|||.|.+|..++..+...+ .+.+++|.+.+.+.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G---~~V~v~~R~~~~~~ 188 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALG---ARVFVGARSSADLA 188 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCC---CEEEEEeCCHHHHH
Confidence 556789999999999999999998754 57777888766543
No 138
>PLN02688 pyrroline-5-carboxylate reductase
Probab=80.42 E-value=2.8 Score=37.88 Aligned_cols=40 Identities=10% Similarity=0.199 Sum_probs=30.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCC-CcceEEEE-eCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSM-TGVEFWIV-NTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~-~~ve~iav-NTD~~~L~ 154 (279)
|||.+||+|..|..|+..|.+.+. ...++++. |.+.+..+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~ 42 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRD 42 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH
Confidence 689999999999999999998753 33466777 76665543
No 139
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=80.38 E-value=14 Score=35.36 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=26.3
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeCc
Q 044090 116 KIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNTD 149 (279)
Q Consensus 116 kI~VIGI-GgaG~NIVd~l~~~~~~----~ve~iavNTD 149 (279)
||.|||. |..|..++..|...++- ..+...+|.+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~ 39 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIP 39 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecC
Confidence 6899999 99999999998876642 2356677763
No 140
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=80.27 E-value=2.3 Score=40.34 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=28.5
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
|+|.+||+|-.|.|+|.+++.++ -++++.|-|+.+.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~g---hdvV~yD~n~~av 36 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGG---HDVVGYDVNQTAV 36 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCC---CeEEEEcCCHHHH
Confidence 68999999999999999999864 4666666655443
No 141
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=80.18 E-value=6.7 Score=38.97 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
.+..+.++.|||.|++|.-++..|.+.+. .+++.+|-+...
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~--~~I~V~nRt~~r 217 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAP--KQIMLANRTIEK 217 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCC--CEEEEECCCHHH
Confidence 34667899999999999999999987543 356778876443
No 142
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=80.16 E-value=3.4 Score=39.56 Aligned_cols=88 Identities=15% Similarity=0.183 Sum_probs=51.3
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCC----cceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMT----GVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~----~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
..||.|+|. |..|..++..|...++- +.+.+++|.+.. ..... ...+-+-.- + .|..+ ..
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~-~~~~~---g~~~Dl~d~------~--~~~~~-~~-- 66 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA-LKALE---GVVMELQDC------A--FPLLK-SV-- 66 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc-ccccc---ceeeehhhc------c--ccccC-Cc--
Confidence 468999999 99999999999887642 357777876432 11110 111111100 0 00000 00
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCccc
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGT 216 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGS 216 (279)
.......+.+++||.|+++||.--..|-
T Consensus 67 ~~~~~~~~~l~~aDiVI~tAG~~~~~~~ 94 (325)
T cd01336 67 VATTDPEEAFKDVDVAILVGAMPRKEGM 94 (325)
T ss_pred eecCCHHHHhCCCCEEEEeCCcCCCCCC
Confidence 0113355678899999999999755543
No 143
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=80.09 E-value=21 Score=34.20 Aligned_cols=95 Identities=17% Similarity=0.140 Sum_probs=55.2
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHH-HhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQA-MKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~-L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
.+|+|+|.|. |-.|.+++.+|.+. +.+.++++-.... +..... ...+..+. . ..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~---G~~V~~v~r~~~~~~~~~~~--~~~~~~~D-----------l--------~d 75 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAE---GHYIIASDWKKNEHMSEDMF--CHEFHLVD-----------L--------RV 75 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhC---CCEEEEEEeccccccccccc--cceEEECC-----------C--------CC
Confidence 5689999998 99999999999985 5577776532111 110000 01122111 0 11
Q ss_pred HHHHHHHhcCCCEEEEEeecCCCccc-------------CHHHHHHHHHHHcCC
Q 044090 191 KVAIEEAISGADMIFVTAGMGGGTGT-------------GAAPVIAGIAKSMGI 231 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGGGTGS-------------G~aPvIaeiake~gi 231 (279)
.+.+.+.++++|.||-+++..++.+. -++..|++.+++.++
T Consensus 76 ~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~v 129 (370)
T PLN02695 76 MENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGV 129 (370)
T ss_pred HHHHHHHHhCCCEEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCC
Confidence 23455666789999888876554332 123445677777664
No 144
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.04 E-value=3.4 Score=38.11 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=31.4
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
|||.|||.|..|..++..|.+. +.+.+++|.+.+.++.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~---g~~V~~~d~~~~~~~~ 38 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL---GHTVYGVSRRESTCER 38 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC---CCEEEEEECCHHHHHH
Confidence 5899999999999999999875 4577888887766553
No 145
>PLN02735 carbamoyl-phosphate synthase
Probab=79.98 E-value=7.4 Score=43.36 Aligned_cols=41 Identities=24% Similarity=0.442 Sum_probs=31.9
Q ss_pred CCCCCCceEEEEeeCcc-----------hHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 109 PNNNNEAKIKVIGVGGG-----------GSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGga-----------G~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
+...+-.||+|||-|.. |..++.+|.+ .|++.+++|++...
T Consensus 18 ~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke---~G~~Vi~vd~np~t 69 (1102)
T PLN02735 18 GKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKE---EGYEVVLINSNPAT 69 (1102)
T ss_pred CcccCCCEEEEECCCccccccceeecchHHHHHHHHHH---cCCEEEEEeCCccc
Confidence 33445679999999973 7789999987 47799999998653
No 146
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=79.82 E-value=5.9 Score=37.11 Aligned_cols=40 Identities=15% Similarity=0.383 Sum_probs=30.3
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
....++.|||.||+|..++..|.+.+.. +...+|-|.+..
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~--~I~I~nR~~~ka 164 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVE--RLTIFDVDPARA 164 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCC--EEEEECCCHHHH
Confidence 3456899999999999999999876432 456678765543
No 147
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=79.67 E-value=13 Score=37.48 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=29.6
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCC----c--ceEEEEeCcHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMT----G--VEFWIVNTDAQ 151 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~----~--ve~iavNTD~~ 151 (279)
-+..||.|||. |..|..++-.|...++- + .+++.+|.+.+
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~ 144 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQ 144 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcc
Confidence 34689999999 99999999998877331 2 36666776433
No 148
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=79.57 E-value=8.7 Score=35.47 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=29.1
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEE-EEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFW-IVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~i-avNTD~~~L~ 154 (279)
|||.|||+|..|..++..+.+... +++.. ++|.+.+...
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~-~~elv~v~d~~~~~a~ 41 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRI-NAELYAFYDRNLEKAE 41 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCC-CeEEEEEECCCHHHHH
Confidence 699999999999999999876432 56644 4677765543
No 149
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=79.48 E-value=27 Score=31.43 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=24.5
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
+|.|+|. |.-|..++.+|.+. +.+..++.-+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~---g~~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA---SVPFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC---CCcEEEEeCCC
Confidence 5889998 99999999999885 44555655443
No 150
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=79.37 E-value=8.9 Score=38.27 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=48.6
Q ss_pred ceEEEEeeCcc-hHHHHHHHHHcC--CCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 115 AKIKVIGVGGG-GSNAVNRMIESS--MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 115 ~kI~VIGIGga-G~NIVd~l~~~~--~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
+||.|||-|.. .-.++..|++.. ++.-+++.+|.|.+.|+.....+. ++ .+-.|. +.. -+.-
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~-~~------~~~~g~--~~~------v~~t 65 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAK-RY------VEEVGA--DIK------FEKT 65 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHH-HH------HHhhCC--CeE------EEEe
Confidence 69999996664 124677776654 677889999999988765210000 00 000000 000 0011
Q ss_pred HHHHHHhcCCCEEEEEeecCC
Q 044090 192 VAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGG 212 (279)
...+++|++||.||...-.||
T Consensus 66 tD~~~Al~gADfVi~~irvGg 86 (425)
T cd05197 66 MDLEDAIIDADFVINQFRVGG 86 (425)
T ss_pred CCHHHHhCCCCEEEEeeecCC
Confidence 225788999999988877776
No 151
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=79.02 E-value=2.5 Score=39.86 Aligned_cols=31 Identities=32% Similarity=0.510 Sum_probs=25.7
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTG 140 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ 140 (279)
......++.|||+||.|+-+|++|.+.+...
T Consensus 26 ekl~~~~V~VvGiGGVGSw~veALaRsGig~ 56 (263)
T COG1179 26 EKLKQAHVCVVGIGGVGSWAVEALARSGIGR 56 (263)
T ss_pred HHHhhCcEEEEecCchhHHHHHHHHHcCCCe
Confidence 3355678999999999999999999976533
No 152
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=78.95 E-value=52 Score=30.66 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=45.7
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC--CCCCCCeEEc-CcccccCCCCCCCchhhHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS--PVIPENRLQI-GCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s--~v~a~~ri~i-G~~~t~G~GaG~np~~G~eaa~ 188 (279)
.+++|.|.|- |+.|..++.+|.+.+ ...+.++++-+....... .. ...++.+ --+.
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~~r~~~~~~~~~~~~-~~~~~~~v~~Dl------------------ 62 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENY-NPKKIIIYSRDELKQWEMQQKF-PAPCLRFFIGDV------------------ 62 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEEcCChhHHHHHHHHh-CCCcEEEEEccC------------------
Confidence 4568999996 889999999999864 124556665443322110 00 0112211 1111
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.+.+.+.++++++|.||-+|++..
T Consensus 63 ~d~~~l~~~~~~iD~Vih~Ag~~~ 86 (324)
T TIGR03589 63 RDKERLTRALRGVDYVVHAAALKQ 86 (324)
T ss_pred CCHHHHHHHHhcCCEEEECcccCC
Confidence 123445666778999988887754
No 153
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.87 E-value=15 Score=36.73 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=25.6
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
...+|.|+|+|+.|..++..|.+. |.+..+.|.
T Consensus 6 ~~~~i~v~G~G~sG~s~a~~L~~~---G~~v~~~D~ 38 (498)
T PRK02006 6 QGPMVLVLGLGESGLAMARWCARH---GARLRVADT 38 (498)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHC---CCEEEEEcC
Confidence 345899999999999988887764 556666664
No 154
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=78.72 E-value=11 Score=31.70 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=25.6
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
||.|||-|..|.-++..|...+ .+......|.+.+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g---~~V~l~~~~~~~~ 35 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG---HEVTLWGRDEEQI 35 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT---EEEEEETSCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHcC---CEEEEEeccHHHH
Confidence 7999999999999999988754 4444444454443
No 155
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.67 E-value=9.9 Score=39.00 Aligned_cols=42 Identities=24% Similarity=0.251 Sum_probs=34.5
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
...+.|+.|+|.|.+|.-++..+... |++.+++|.+...++.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l---GA~V~a~D~~~~rle~ 203 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSL---GAIVRAFDTRPEVAEQ 203 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHH
Confidence 34688999999999999999887664 5578899998877765
No 156
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=78.46 E-value=22 Score=37.14 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=30.3
Q ss_pred CCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 110 NNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 110 ~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
+.+.+..|.|.|. |+.|..++.+|++. +.+.+++.-+.+.+
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~---G~~Vval~Rn~ekl 117 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKL---GFRVRAGVRSAQRA 117 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHC---CCeEEEEeCCHHHH
Confidence 4456678999997 89999999999985 55666665555444
No 157
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=77.80 E-value=5.5 Score=41.20 Aligned_cols=95 Identities=12% Similarity=0.153 Sum_probs=61.3
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA 193 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~ 193 (279)
+..+.|+|.|..|..+++.|.++ +.+++++|.|.+..+.... ...++..|.- .++ +-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d~~~v~~~~~-~g~~v~~GDa--------t~~-----------~~ 456 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN---KMRITVLERDISAVNLMRK-YGYKVYYGDA--------TQL-----------EL 456 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHh-CCCeEEEeeC--------CCH-----------HH
Confidence 57899999999999999998874 6789999999988765321 2345555421 122 22
Q ss_pred HHH-HhcCCCEEEEEeecCCCccc-CHHHHHHHHHHHcC--CcEEEEE
Q 044090 194 IEE-AISGADMIFVTAGMGGGTGT-GAAPVIAGIAKSMG--ILTVGIA 237 (279)
Q Consensus 194 I~~-~Le~~D~vfIvAGLGGGTGS-G~aPvIaeiake~g--i~tvaIv 237 (279)
+++ -+++||+++++ |+. -..-.+++.+|++. ..+++-+
T Consensus 457 L~~agi~~A~~vv~~------~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 457 LRAAGAEKAEAIVIT------CNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred HHhcCCccCCEEEEE------eCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 222 35788987775 333 23445667777653 4555443
No 158
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.72 E-value=11 Score=36.09 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=48.8
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCc----ceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTG----VEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~----ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
.||.|||. |..|..++-.|...++-+ .+...+|.+.. +.... -..+-+-...+.. ..+. .
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~-~~~~~---g~~~Dl~d~~~~~---~~~~--------~ 65 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPA-MKALE---GVVMELQDCAFPL---LKGV--------V 65 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCc-cCccc---eeeeehhhhcccc---cCCc--------E
Confidence 48999999 999999999888765422 35666776541 11100 0111111100000 0000 0
Q ss_pred HHHHHHHHhcCCCEEEEEeecCCCccc
Q 044090 190 SKVAIEEAISGADMIFVTAGMGGGTGT 216 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGGGTGS 216 (279)
......+.+++||.|+++||.--..|.
T Consensus 66 i~~~~~~~~~~aDiVVitAG~~~~~g~ 92 (323)
T cd00704 66 ITTDPEEAFKDVDVAILVGAFPRKPGM 92 (323)
T ss_pred EecChHHHhCCCCEEEEeCCCCCCcCC
Confidence 112346788999999999998766553
No 159
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=77.69 E-value=14 Score=34.19 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=53.6
Q ss_pred eeCcchHHHHHHHHHcCC-CcceEEEEeCcHHHHhcCCCCCCCe-EEcCcccccCCCCCCCchhhHHHHHHHHHHHHHHh
Q 044090 121 GVGGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMKVSPVIPENR-LQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAI 198 (279)
Q Consensus 121 GIGgaG~NIVd~l~~~~~-~~ve~iavNTD~~~L~~s~v~a~~r-i~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~~~L 198 (279)
|.|--|.+||.+|++++. ..+..+....+...+..... .+.. +..|. + .+.+.+.+++
T Consensus 5 gsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~-~~~~~~~~~D-i------------------~d~~~l~~a~ 64 (280)
T PF01073_consen 5 GSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQK-SGVKEYIQGD-I------------------TDPESLEEAL 64 (280)
T ss_pred CCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhc-ccceeEEEec-c------------------ccHHHHHHHh
Confidence 457789999999999763 22333222322222111100 0111 22211 1 2457789999
Q ss_pred cCCCEEEEEeecCCCccc-----------CHHHHHHHHHHHcCCcEE
Q 044090 199 SGADMIFVTAGMGGGTGT-----------GAAPVIAGIAKSMGILTV 234 (279)
Q Consensus 199 e~~D~vfIvAGLGGGTGS-----------G~aPvIaeiake~gi~tv 234 (279)
++||.||-+|++..-.+. .++--|++.+++.++..+
T Consensus 65 ~g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~Vkrl 111 (280)
T PF01073_consen 65 EGVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRL 111 (280)
T ss_pred cCCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 999999999998766551 234556677777664433
No 160
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=77.29 E-value=7.8 Score=33.81 Aligned_cols=36 Identities=11% Similarity=0.171 Sum_probs=27.5
Q ss_pred CCCCCceEEEEeeCcc-hHHHHHHHHHcCCCcceEEEEeC
Q 044090 110 NNNNEAKIKVIGVGGG-GSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 110 ~~~~~~kI~VIGIGga-G~NIVd~l~~~~~~~ve~iavNT 148 (279)
.+..+.++.|||.|.. |.-++..|.+. +++.+.+|-
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~---g~~V~v~~r 76 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNR---NATVTVCHS 76 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhC---CCEEEEEEC
Confidence 4578889999999985 77788888874 456666663
No 161
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=77.21 E-value=6.4 Score=37.76 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=30.5
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
....+++|.|||+|..|..++..|... +.+.+++|.+.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~---G~~V~~~d~~~ 179 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGF---GATITAYDAYP 179 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEEeCCh
Confidence 456788999999999999999998764 55777777543
No 162
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=76.74 E-value=39 Score=27.41 Aligned_cols=97 Identities=19% Similarity=0.264 Sum_probs=52.8
Q ss_pred eEEEEe----eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchh-----hHHH
Q 044090 116 KIKVIG----VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSV-----GMNA 186 (279)
Q Consensus 116 kI~VIG----IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~-----G~ea 186 (279)
+|.||| -+..|..+++.|.+ .+.+.+.||-..+.+...+..+ .+. . ....++. ..+.
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~---~G~~v~~Vnp~~~~i~G~~~y~--sl~--e-------~p~~iDlavv~~~~~~ 67 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKA---AGYEVYPVNPKGGEILGIKCYP--SLA--E-------IPEPIDLAVVCVPPDK 67 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHH---TT-EEEEESTTCSEETTEE-BS--SGG--G-------CSST-SEEEE-S-HHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHh---CCCEEEEECCCceEECcEEeec--ccc--C-------CCCCCCEEEEEcCHHH
Confidence 688999 56779999999988 5678899987654433211100 000 0 0011211 1223
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEE
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tva 235 (279)
..+..+++.+. ++..+++..| ...+.+.+++++.++.+++
T Consensus 68 ~~~~v~~~~~~--g~~~v~~~~g-------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 68 VPEIVDEAAAL--GVKAVWLQPG-------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHHHHHHHH--T-SEEEE-TT-------S--HHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHc--CCCEEEEEcc-------hHHHHHHHHHHHcCCEEEe
Confidence 33333333322 7889998876 5678888999998877654
No 163
>PRK12829 short chain dehydrogenase; Provisional
Probab=76.65 E-value=14 Score=32.36 Aligned_cols=88 Identities=16% Similarity=0.307 Sum_probs=53.2
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCC-CCCCeEE-cCcccccCCCCCCCchhhHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPENRLQ-IGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v-~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
....+++|+|. |+.|..++.+|.++ +.+.+.+..+...+..... ..+.++. +--+. .+ .+..+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~-------~~----~~~~~ 74 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEA---GARVHVCDVSEAALAATAARLPGAKVTATVADV-------AD----PAQVE 74 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHhcCceEEEEccC-------CC----HHHHH
Confidence 45579999997 77788899999885 5577777766554432100 0111111 11111 11 23345
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
+..+++.+.+..+|.||..+|....
T Consensus 75 ~~~~~~~~~~~~~d~vi~~ag~~~~ 99 (264)
T PRK12829 75 RVFDTAVERFGGLDVLVNNAGIAGP 99 (264)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCC
Confidence 5666777777899999888876533
No 164
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.53 E-value=43 Score=30.20 Aligned_cols=132 Identities=23% Similarity=0.234 Sum_probs=76.0
Q ss_pred EEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHHHHh
Q 044090 119 VIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAI 198 (279)
Q Consensus 119 VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~~~L 198 (279)
|-|.-|.|-.-+-......+.+ .++.||+|.-+...++. .+-...-+|++.....|...+
T Consensus 7 vaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~i~p~-------------------~p~~~~i~A~r~ai~~i~~~I 66 (187)
T COG4185 7 VAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQISPD-------------------NPTSAAIQAARVAIDRIARLI 66 (187)
T ss_pred EecCCCCCceeeeeccchhhcC-CeEEECHHHHhhhcCCC-------------------CchHHHHHHHHHHHHHHHHHH
Confidence 3456666655443333222222 56889999877655432 112334466677777777777
Q ss_pred cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEE-EEccCCC------------------Cch--hHHHHHHHHHHH
Q 044090 199 SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG-IATVPFC------------------FEG--RRRAIQAQEGVA 257 (279)
Q Consensus 199 e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tva-IvtlPf~------------------~Eg--~~r~~NA~~gL~ 257 (279)
+.=-.|.+=..|.|-+ ..+ +++.||+.|..++= .+.++.- -|. ++|.+...+-|.
T Consensus 67 ~~~~~F~~ETtLS~~s---~~~-~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rsle~l~ 142 (187)
T COG4185 67 DLGRPFIAETTLSGPS---ILE-LIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRSLELLA 142 (187)
T ss_pred HcCCCcceEEeeccch---HHH-HHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 6544555555666555 333 33667776733322 2223331 122 235566777777
Q ss_pred HHHHhCCEEEEEechHH
Q 044090 258 NLRNNVDTLIVIPNDKL 274 (279)
Q Consensus 258 ~L~e~aD~vIv~DNd~L 274 (279)
.....+|..++.||..+
T Consensus 143 ~~l~l~dr~~IydNS~~ 159 (187)
T COG4185 143 QALTLADRATIYDNSRL 159 (187)
T ss_pred HHHhhcceeEEecCCCC
Confidence 77789999999999764
No 165
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=75.94 E-value=4.3 Score=36.81 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=30.4
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
....|+.|+|.|++|.-|+..|.+.+...-++|.+|.+
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 45679999999999999999998764432257888886
No 166
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=75.70 E-value=7.9 Score=37.20 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=55.5
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHH--HHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQ--AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~--~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
+.++||.|||.|..|...+..+.+ .++++..+ ++.|.+ .+... .+ .|-..+ .
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~--~~~velvAVvdid~es~gla~A-----~~--~Gi~~~----------------~ 56 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILR--SEHLEPGAMVGIDPESDGLARA-----RR--LGVATS----------------A 56 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhc--CCCcEEEEEEeCChhhHHHHHH-----HH--cCCCcc----------------c
Confidence 357899999999999998888776 35677654 466553 23221 11 111100 0
Q ss_pred HHHHHHHHH--hcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090 189 ESKVAIEEA--ISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (279)
Q Consensus 189 e~~e~I~~~--Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI 236 (279)
+..+.+.+. +++.|+||++ |+...-...+..+.+.|+.++..
T Consensus 57 ~~ie~LL~~~~~~dIDiVf~A------T~a~~H~e~a~~a~eaGk~VID~ 100 (302)
T PRK08300 57 EGIDGLLAMPEFDDIDIVFDA------TSAGAHVRHAAKLREAGIRAIDL 100 (302)
T ss_pred CCHHHHHhCcCCCCCCEEEEC------CCHHHHHHHHHHHHHcCCeEEEC
Confidence 112222221 3578899985 45666666677777778666554
No 167
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=75.66 E-value=22 Score=34.94 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=22.9
Q ss_pred eEEEEeeCcchHH-HHHHHHHcCCCcceEEEEeC
Q 044090 116 KIKVIGVGGGGSN-AVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 116 kI~VIGIGgaG~N-IVd~l~~~~~~~ve~iavNT 148 (279)
+|.|||+|+.|.. ++..|.+ .|.+..+.|.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~---~G~~v~~~D~ 31 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLN---RGYQVSGSDI 31 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHH---CCCeEEEECC
Confidence 5889999999998 6666665 4667766664
No 168
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=75.22 E-value=4.8 Score=37.60 Aligned_cols=38 Identities=29% Similarity=0.473 Sum_probs=30.8
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
|||.|||+|-.|.+++..|.+. +.+..+.|-+.+..+.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~---g~~V~~~dr~~~~~~~ 38 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR---GHDCVGYDHDQDAVKA 38 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC---CCEEEEEECCHHHHHH
Confidence 5899999999999999999885 4566677887766543
No 169
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=74.99 E-value=11 Score=36.83 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=32.1
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
....++.|||.|.+|..++..+... +++..++|.+.+.++
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l---Ga~V~v~d~~~~~~~ 204 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL---GATVTILDINIDRLR 204 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC---CCeEEEEECCHHHHH
Confidence 3567899999999999999999875 456778888766554
No 170
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=74.89 E-value=6.3 Score=32.25 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=31.5
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
....+|.|||.|+.|..++..+.+.+ ..+..++|.+.+.+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g--~~~v~v~~r~~~~~~ 57 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELG--AAKIVIVNRTLEKAK 57 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCC--CCEEEEEcCCHHHHH
Confidence 44678999999999999999998754 345666777766554
No 171
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=74.84 E-value=11 Score=34.13 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~ 168 (279)
+......+++|||.||-|+-++.+|...+... ...+|-|.-++.+. .+.+++..
T Consensus 25 q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~--l~i~D~d~v~~snL----~rq~~~~~ 78 (254)
T COG0476 25 QQKLKDSRVLVVGAGGLGSPAAKYLALAGVGK--LTIVDFDTVELSNL----QRQFLFTE 78 (254)
T ss_pred HHHHhhCCEEEEecChhHHHHHHHHHHcCCCe--EEEEcCCccccccc----Cceeeecc
Confidence 45567789999999999999999999876543 56788888877664 35555544
No 172
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=74.78 E-value=17 Score=32.01 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=49.1
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANESKV 192 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~~e 192 (279)
|++.|+|. |+.|..++.+|.++ +.+.++++.+...+.........++. +--+. .++ +..++..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~i~~~~~ 66 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ---GHKVIATGRRQERLQELKDELGDNLYIAQLDV-------RNR----AAIEEMLA 66 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhccceEEEEecC-------CCH----HHHHHHHH
Confidence 57899996 77899999999875 56777777766655432100001111 11111 112 23344555
Q ss_pred HHHHHhcCCCEEEEEeecC
Q 044090 193 AIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 193 ~I~~~Le~~D~vfIvAGLG 211 (279)
++.+.+..+|.++..+|..
T Consensus 67 ~~~~~~~~id~vi~~ag~~ 85 (248)
T PRK10538 67 SLPAEWRNIDVLVNNAGLA 85 (248)
T ss_pred HHHHHcCCCCEEEECCCcc
Confidence 6666677899988877654
No 173
>PRK14852 hypothetical protein; Provisional
Probab=74.62 E-value=6.8 Score=43.27 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=34.0
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
....+.||.|||+||.|+.++..|...+.. ++..+|-|.-++.+
T Consensus 328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG--~I~L~D~D~Ve~SN 371 (989)
T PRK14852 328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIG--NFNLADFDAYSPVN 371 (989)
T ss_pred HHHhcCcEEEECCcHHHHHHHHHHHHcCCC--eEEEEcCCEecccc
Confidence 446688999999999999999999997652 45567776555544
No 174
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=74.50 E-value=8.1 Score=40.19 Aligned_cols=87 Identities=13% Similarity=0.198 Sum_probs=56.9
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA 193 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~ 193 (279)
..++.|+|.|..|..++..|.++ +.+++++|.|.+..+.... ...++..|.- .++ +-
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~---g~~vvvID~d~~~v~~~~~-~g~~v~~GDa--------t~~-----------~~ 456 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS---GVKMTVLDHDPDHIETLRK-FGMKVFYGDA--------TRM-----------DL 456 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHh-cCCeEEEEeC--------CCH-----------HH
Confidence 56899999999999999999874 6789999999887765421 2455655531 222 11
Q ss_pred HH-HHhcCCCEEEEEeecCCCccc-CHHHHHHHHHHHc
Q 044090 194 IE-EAISGADMIFVTAGMGGGTGT-GAAPVIAGIAKSM 229 (279)
Q Consensus 194 I~-~~Le~~D~vfIvAGLGGGTGS-G~aPvIaeiake~ 229 (279)
++ .-++.+|.++++ |+. -..-.++..+|+.
T Consensus 457 L~~agi~~A~~vvv~------~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 457 LESAGAAKAEVLINA------IDDPQTSLQLVELVKEH 488 (621)
T ss_pred HHhcCCCcCCEEEEE------eCCHHHHHHHHHHHHHh
Confidence 22 235678877764 233 3345556677764
No 175
>PRK07877 hypothetical protein; Provisional
Probab=74.21 E-value=8.3 Score=41.23 Aligned_cols=107 Identities=17% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
+....+.+|.|||+| .|+.++..|...+.- -++..+|-|.-++.+. ||++..... .| .+ +...+++
T Consensus 102 Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvv-G~l~lvD~D~ve~sNL-----nRq~~~~~d---iG---~~-Kv~~a~~ 167 (722)
T PRK07877 102 QERLGRLRIGVVGLS-VGHAIAHTLAAEGLC-GELRLADFDTLELSNL-----NRVPAGVFD---LG---VN-KAVVAAR 167 (722)
T ss_pred HHHHhcCCEEEEEec-HHHHHHHHHHHccCC-CeEEEEcCCEEccccc-----ccccCChhh---cc---cH-HHHHHHH
Confidence 445678899999997 899999999885420 1567788887666553 454322111 11 11 1111111
Q ss_pred HH-----------------HHHHHHHhcCCCEEEEEeecCCCcccCHHHHH-HHHHHHcCCcEEE
Q 044090 189 ES-----------------KVAIEEAISGADMIFVTAGMGGGTGTGAAPVI-AGIAKSMGILTVG 235 (279)
Q Consensus 189 e~-----------------~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvI-aeiake~gi~tva 235 (279)
.. .+.+.+.++++|+|+= +|-+=.+-++ -+.+.+.+++.|.
T Consensus 168 ~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD------~~D~~~~R~~ln~~a~~~~iP~i~ 226 (722)
T PRK07877 168 RIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVE------ECDSLDVKVLLREAARARRIPVLM 226 (722)
T ss_pred HHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEE------CCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11 2446667788997765 3444445444 4677888877765
No 176
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=74.17 E-value=55 Score=29.49 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=43.6
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA 193 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~ 193 (279)
|+|.|.|. |..|..++.+|.+. +.+.++++.+...+..... ..-.+..+ |. ...+.
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~~-~~~~~~~~-----------D~--------~~~~~ 57 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ---GEEVRVLVRPTSDRRNLEG-LDVEIVEG-----------DL--------RDPAS 57 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC---CCEEEEEEecCcccccccc-CCceEEEe-----------eC--------CCHHH
Confidence 57999986 88999999999985 4577777654332211100 01111111 11 12345
Q ss_pred HHHHhcCCCEEEEEeec
Q 044090 194 IEEAISGADMIFVTAGM 210 (279)
Q Consensus 194 I~~~Le~~D~vfIvAGL 210 (279)
+.++++.+|.||-+++.
T Consensus 58 l~~~~~~~d~vi~~a~~ 74 (328)
T TIGR03466 58 LRKAVAGCRALFHVAAD 74 (328)
T ss_pred HHHHHhCCCEEEEecee
Confidence 77778889988877754
No 177
>PRK08605 D-lactate dehydrogenase; Validated
Probab=73.72 E-value=5.9 Score=37.89 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=29.9
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
.+..+++|.|||.|..|..++..+.+ . -+++.++.|..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~-~-~g~~V~~~d~~ 179 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAK-G-YGSDVVAYDPF 179 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHh-c-CCCEEEEECCC
Confidence 45778899999999999999999843 2 35677777754
No 178
>PRK06182 short chain dehydrogenase; Validated
Probab=73.50 E-value=21 Score=31.81 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=50.0
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV 192 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e 192 (279)
+.++.|.|. |+.|..++.++.+. +.+.+++.-+.+.++.... ..-....+ +. .++ +..++..+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~---G~~V~~~~r~~~~l~~~~~-~~~~~~~~-Dv-------~~~----~~~~~~~~ 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ---GYTVYGAARRVDKMEDLAS-LGVHPLSL-DV-------TDE----ASIKAAVD 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-CCCeEEEe-eC-------CCH----HHHHHHHH
Confidence 468999996 78899999999874 5677777777666653210 01111111 11 122 23344455
Q ss_pred HHHHHhcCCCEEEEEeecC
Q 044090 193 AIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 193 ~I~~~Le~~D~vfIvAGLG 211 (279)
++.+.....|.++..+|.+
T Consensus 67 ~~~~~~~~id~li~~ag~~ 85 (273)
T PRK06182 67 TIIAEEGRIDVLVNNAGYG 85 (273)
T ss_pred HHHHhcCCCCEEEECCCcC
Confidence 5555667899998888765
No 179
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=73.39 E-value=29 Score=36.10 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=54.5
Q ss_pred cccCCCCCCCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCc
Q 044090 102 SLRQSSVPNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNP 180 (279)
Q Consensus 102 ~~~~~~~~~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np 180 (279)
.+.+.+.-.--+.++|+|.|. |-.|..++.+|.+.+ +.+.++++-+...+.... ...++.+ ..| |.
T Consensus 303 ~~~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~--g~~V~~l~r~~~~~~~~~--~~~~~~~----~~g-----Dl 369 (660)
T PRK08125 303 RLNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDD--NYEVYGLDIGSDAISRFL--GHPRFHF----VEG-----DI 369 (660)
T ss_pred EecccchhhhhcCCEEEEECCCchHHHHHHHHHHhCC--CcEEEEEeCCchhhhhhc--CCCceEE----Eec-----cc
Confidence 355555555567889999995 999999999998752 567777765433222110 1112211 000 11
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 181 SVGMNAANESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 181 ~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
. +....++++++++|.||=+|+..+.
T Consensus 370 ~-------d~~~~l~~~l~~~D~ViHlAa~~~~ 395 (660)
T PRK08125 370 S-------IHSEWIEYHIKKCDVVLPLVAIATP 395 (660)
T ss_pred c-------CcHHHHHHHhcCCCEEEECccccCc
Confidence 0 0112245667899999888877654
No 180
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=73.30 E-value=14 Score=32.93 Aligned_cols=36 Identities=6% Similarity=0.263 Sum_probs=28.9
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
+..+.+++|||-|..|...+..|.+.+ .+..+|+-+
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g---a~V~VIs~~ 42 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG---AHIVVISPE 42 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC---CeEEEEcCC
Confidence 456779999999999999999999854 566666654
No 181
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.25 E-value=9.9 Score=37.79 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=31.6
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.++|.|||.|+.|..++..|.+++- .+..+.+.....+.+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d--~~V~iAdRs~~~~~~ 40 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGD--GEVTIADRSKEKCAR 40 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCC--ceEEEEeCCHHHHHH
Confidence 3789999999999999999988753 666667776666555
No 182
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=73.00 E-value=38 Score=31.55 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=26.7
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
|+|.|.|. |..|+.++.+|++.. +.+.++++-+.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~--~~~V~~~~r~~ 36 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETT--DWEVYGMDMQT 36 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCC--CCeEEEEeCcH
Confidence 58999997 999999999998752 45667776443
No 183
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.98 E-value=6.1 Score=36.76 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=32.7
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCC-CcceEEEEeCcHHHHhc
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~-~~ve~iavNTD~~~L~~ 155 (279)
.+||.+||+|..|..|+..|.+.+. ...++++.|-+.+.++.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~ 44 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKN 44 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHH
Confidence 3589999999999999999998763 34467777766666543
No 184
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=72.76 E-value=14 Score=36.93 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=49.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI 194 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I 194 (279)
.||+|+|=|..+.+++..+.+. |++.+++++|..........++..+.+|... ... -...+.|
T Consensus 3 ~kvLi~~~geia~~ii~a~~~~---Gi~~v~v~~~~d~~a~~~~~aD~~~~i~~~~----------~~~----y~d~~~i 65 (472)
T PRK07178 3 KKILIANRGEIAVRIVRACAEM---GIRSVAIYSEADRHALHVKRADEAYSIGADP----------LAG----YLNPRRL 65 (472)
T ss_pred cEEEEECCcHHHHHHHHHHHHc---CCeEEEEeCCCccCCccHhhCCEEEEcCCCc----------hhh----hcCHHHH
Confidence 4899999999999999999884 6789999998665332211256677776421 000 0123455
Q ss_pred HHHh--cCCCEEEE
Q 044090 195 EEAI--SGADMIFV 206 (279)
Q Consensus 195 ~~~L--e~~D~vfI 206 (279)
.+.. +++|+|+-
T Consensus 66 ~~~a~~~~~D~I~p 79 (472)
T PRK07178 66 VNLAVETGCDALHP 79 (472)
T ss_pred HHHHHHHCCCEEEe
Confidence 5555 48898775
No 185
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.70 E-value=6.2 Score=35.67 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=30.8
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
.++|.|||.|..|..++..|.+.+....+.++++-+.+.++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~ 42 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRA 42 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHH
Confidence 36899999999999999999886532245566776655543
No 186
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=72.43 E-value=16 Score=36.88 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=50.2
Q ss_pred HHHHHHHHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEc------------------cCC-------
Q 044090 189 ESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIAT------------------VPF------- 241 (279)
Q Consensus 189 e~~e~I~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvt------------------lPf------- 241 (279)
+.-.+|-+.| ++.|+++++..=|=-|=+| ..+++.+.+.|++++-+.+ .|+
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~--a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp~~~ip~PlGnp~l 400 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUGTCTRCG--ATMVKEIERAGIPVVHMCTVIPIALTVGANRIVPTIAIPHPLGDPAL 400 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcchhHH--HHHHHHHHHcCCCEEEEeecccHhhhcCccceecccCcCCCCCCCCC
Confidence 4444454444 5999999986554444444 4477888888999888776 122
Q ss_pred --CCchhHHHHHHHHHHHHHHHhCCEEEE
Q 044090 242 --CFEGRRRAIQAQEGVANLRNNVDTLIV 268 (279)
Q Consensus 242 --~~Eg~~r~~NA~~gL~~L~e~aD~vIv 268 (279)
..|-..|......+|+.|..-.+.-.+
T Consensus 401 ~~~~e~~~Rr~~v~~AL~aL~t~~~~qt~ 429 (431)
T TIGR01918 401 SKAEEKKLRRKRVEKALKALETEVEEQTV 429 (431)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCcCcc
Confidence 122344677788888888876654433
No 187
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=72.31 E-value=6.2 Score=34.39 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
||.|||.|..|..|+-.+... |.+...+|.|.+.++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~l~~ 37 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA---GYEVTLYDRSPEALER 37 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT---TSEEEEE-SSHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhC---CCcEEEEECChHHHHh
Confidence 689999999999999888874 6788889998887765
No 188
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.23 E-value=6.5 Score=36.29 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=31.9
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
-.||.|||.|..|..|+..+... +.+.+.+|.+.+.++.
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~---G~~V~l~d~~~~~~~~ 42 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA---GYDVLLNDVSADRLEA 42 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC---CCeEEEEeCCHHHHHH
Confidence 35899999999999999999875 4577788888776653
No 189
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=72.00 E-value=62 Score=27.56 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=26.3
Q ss_pred HHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 196 EAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 196 ~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
..+..-|++|++ +..|-| --.-.+++.+|+.|+++++|...+.
T Consensus 97 ~~~~~~Dv~I~i-S~SG~t--~~~i~~~~~ak~~Ga~vI~IT~~~~ 139 (177)
T cd05006 97 ALGQPGDVLIGI-STSGNS--PNVLKALEAAKERGMKTIALTGRDG 139 (177)
T ss_pred HhCCCCCEEEEE-eCCCCC--HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 345555666555 444443 2334446778889999999975543
No 190
>PRK13660 hypothetical protein; Provisional
Probab=71.98 E-value=17 Score=32.41 Aligned_cols=77 Identities=22% Similarity=0.326 Sum_probs=47.7
Q ss_pred HHHHHHHhc-CCCEEEEEeecCCCcccC--HHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEE
Q 044090 191 KVAIEEAIS-GADMIFVTAGMGGGTGTG--AAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267 (279)
Q Consensus 191 ~e~I~~~Le-~~D~vfIvAGLGGGTGSG--~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vI 267 (279)
.++|.+.++ +.+-|++ ||..|.- ++-++.++-++++-+.++++ +||..-+.+=....++=+..|.+.+|.+.
T Consensus 32 ~~~l~~~~e~G~~wfi~----ggalG~d~wAaEvvl~LK~~yp~lkL~~~-~PF~~q~~~W~e~~q~~y~~i~~~aD~v~ 106 (182)
T PRK13660 32 KRKLIALLEEGLEWVII----SGQLGVELWAAEVVLELKEEYPDLKLAVI-TPFEEHGENWNEANQEKLANILKQADFVK 106 (182)
T ss_pred HHHHHHHHHCCCCEEEE----CCcchHHHHHHHHHHHHHhhCCCeEEEEE-eCccchhhcCCHHHHHHHHHHHHhCCEEE
Confidence 345666664 5555544 4454443 44555566667665555544 79976665434455666788999999999
Q ss_pred EEech
Q 044090 268 VIPND 272 (279)
Q Consensus 268 v~DNd 272 (279)
.+...
T Consensus 107 ~vs~~ 111 (182)
T PRK13660 107 SISKR 111 (182)
T ss_pred EecCC
Confidence 88654
No 191
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=71.94 E-value=60 Score=27.55 Aligned_cols=38 Identities=26% Similarity=0.566 Sum_probs=22.0
Q ss_pred ceEEEEeeCcchH--HHHHHHHHcCC-CcceE-EEEeCcHHH
Q 044090 115 AKIKVIGVGGGGS--NAVNRMIESSM-TGVEF-WIVNTDAQA 152 (279)
Q Consensus 115 ~kI~VIGIGgaG~--NIVd~l~~~~~-~~ve~-iavNTD~~~ 152 (279)
-+|.++|+||-.. .++..+..... .+.++ +..|+|...
T Consensus 21 ~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~ 62 (158)
T cd05015 21 TDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDD 62 (158)
T ss_pred CEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHH
Confidence 4799999999544 34444433322 24443 446778754
No 192
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=71.92 E-value=17 Score=34.12 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=30.5
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~~ 155 (279)
++|.+||+|..|.-++..+. .+...+++++ .|+|.+....
T Consensus 1 l~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D~~~ek~~~ 41 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVR-DGRVDFELVAVYDRDEEKAKE 41 (255)
T ss_pred CeEEEEeccHHHHHHHHHHh-cCCcceeEEEEecCCHHHHHH
Confidence 58999999999999887664 4446788766 4887776653
No 193
>PRK06057 short chain dehydrogenase; Provisional
Probab=71.74 E-value=21 Score=31.45 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
..+.++.|+|. |+-|..++.+|.++ +.+.++++.+...+..........++. .+. .+ .+..+..
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~-~D~-------~~----~~~~~~~ 69 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAE---GATVVVGDIDPEAGKAAADEVGGLFVP-TDV-------TD----EDAVNAL 69 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHcCCcEEE-eeC-------CC----HHHHHHH
Confidence 55678999999 88999999999885 567777766554443210000111111 111 11 1234445
Q ss_pred HHHHHHHhcCCCEEEEEeecC
Q 044090 191 KVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+++.+.....|.++..+|..
T Consensus 70 ~~~~~~~~~~id~vi~~ag~~ 90 (255)
T PRK06057 70 FDTAAETYGSVDIAFNNAGIS 90 (255)
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 555666667789988887654
No 194
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=71.30 E-value=24 Score=34.78 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=35.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~ 168 (279)
.||+|+|-|+.+..++.+..+. |++++++++|...-......+++.+.+++
T Consensus 3 kkili~g~g~~~~~~~~aa~~l---G~~vv~~~~~~d~~a~~~~~aD~~~~~~~ 53 (449)
T TIGR00514 3 DKILIANRGEIALRILRACKEL---GIKTVAVHSTADRDALHVLLADEAVCIGP 53 (449)
T ss_pred ceEEEeCCCHHHHHHHHHHHHc---CCeEEEEEChhhhcccccccCCEEEEcCC
Confidence 4899999999999999998884 77899998854422111112566666653
No 195
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=71.24 E-value=23 Score=35.03 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=26.0
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
..||.|+|+|..|..+++.|.+. +.+..+.|.+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~---G~~V~~~D~~ 46 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKL---GAKVTAFDKK 46 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHC---CCEEEEECCC
Confidence 46899999999999998888774 4566666653
No 196
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=71.20 E-value=7 Score=36.46 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=29.5
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
|+|.|||+|..|..++..|.+. +.+.++.|-+.+..+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~---g~~v~v~dr~~~~~~ 37 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED---GHEVVGYDVNQEAVD 37 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC---CCEEEEEECCHHHHH
Confidence 5899999999999999999885 456667787665543
No 197
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=70.83 E-value=8.3 Score=36.42 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=29.8
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
.++|.|+|+|..|+.++..|.+.+. .+..+-.+-+...+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~-~v~i~g~d~~~~~~~ 42 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGL-VVRIIGRDRSAATLK 42 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCC-eEEEEeecCcHHHHH
Confidence 5799999999999999999988652 344555665555443
No 198
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=70.76 E-value=7.2 Score=36.36 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=29.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
|||.|||+|-.|..++..|.+. +.+..+.|-+.+..+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~---g~~v~v~dr~~~~~~ 37 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG---GHEVVGYDRNPEAVE 37 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC---CCeEEEEECCHHHHH
Confidence 5899999999999999999885 456677787765543
No 199
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=70.31 E-value=21 Score=39.54 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=29.3
Q ss_pred CCceEEEEeeCcc-----------hHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 113 NEAKIKVIGVGGG-----------GSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 113 ~~~kI~VIGIGga-----------G~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
+-.||+|||-|.. |..++.+|.+ .|++.+++|++...
T Consensus 6 ~~~kvLiig~G~~~igq~~e~d~sg~~~~~aLke---~G~~vi~v~~~p~~ 53 (1066)
T PRK05294 6 DIKKILIIGSGPIVIGQACEFDYSGTQACKALRE---EGYRVVLVNSNPAT 53 (1066)
T ss_pred CCCEEEEECCchhhhcccccccchHHHHHHHHHH---cCCEEEEEcCCccc
Confidence 4569999999973 5678888877 47899999988754
No 200
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=70.30 E-value=32 Score=33.16 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=26.7
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEE-eCcH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIV-NTDA 150 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iav-NTD~ 150 (279)
+||.|||. |-.|..++..|.++ +.++..++ .++.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~ 36 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRE 36 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccch
Confidence 58999999 89999999988754 67787754 6553
No 201
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=70.21 E-value=27 Score=38.74 Aligned_cols=39 Identities=31% Similarity=0.432 Sum_probs=30.8
Q ss_pred CCCceEEEEeeCcc-----------hHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGVGGG-----------GSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGIGga-----------G~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
.+-.||+|||-|.. |.-++.+|.+ .|.+.+++|++....
T Consensus 5 ~~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e---~G~~vi~v~~np~~~ 54 (1068)
T PRK12815 5 TDIQKILVIGSGPIVIGQAAEFDYSGTQACLALKE---EGYQVVLVNPNPATI 54 (1068)
T ss_pred CCCCEEEEECCCcchhcchhhhhhHHHHHHHHHHH---cCCEEEEEeCCcchh
Confidence 34569999999975 6778888877 478999999987543
No 202
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=70.09 E-value=32 Score=32.53 Aligned_cols=29 Identities=21% Similarity=0.472 Sum_probs=22.8
Q ss_pred EEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 119 VIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 119 VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
|||.|..|..++..|...++- -++..+|.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~-~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIA-DEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCC-CEEEEEeC
Confidence 699999999999988876542 36666775
No 203
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=70.06 E-value=6.3 Score=36.29 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=28.3
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcC-CCcceEEEEeC
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESS-MTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~-~~~ve~iavNT 148 (279)
+.|||.|||.|..|..|+..|.+.+ ....++++.|-
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r 38 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNR 38 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 4689999999999999999999875 23345566664
No 204
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=69.74 E-value=1.6 Score=39.34 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=38.3
Q ss_pred CCEEEEEeecCCCcccCHHHHHHHHHHHcC---CcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechHHHhh
Q 044090 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSMG---ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTA 277 (279)
Q Consensus 201 ~D~vfIvAGLGGGTGSG~aPvIaeiake~g---i~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~L~~i 277 (279)
+| .+|+|||||.| |++++.+.. ...--++.-|-......|.+-...++ ...|--+|.||.++|.+
T Consensus 67 ~d-~ivIAGMGG~l-------I~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf----~I~~E~lv~e~~~~YeI 134 (205)
T PF04816_consen 67 VD-TIVIAGMGGEL-------IIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGF----EIIDEDLVEENGRFYEI 134 (205)
T ss_dssp ---EEEEEEE-HHH-------HHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTE----EEEEEEEEEETTEEEEE
T ss_pred CC-EEEEecCCHHH-------HHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCC----EEEEeEEEeECCEEEEE
Confidence 44 45668999997 677766522 11223445788777766654333332 46788999999888765
No 205
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=69.65 E-value=13 Score=41.26 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=34.6
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCC---cceEEEEeCcHHHHhcC
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMT---GVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~---~ve~iavNTD~~~L~~s 156 (279)
..+.||.|||+||-||.++..|...+.. .-++..+|-|.-.+.+.
T Consensus 417 L~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL 464 (1008)
T TIGR01408 417 LQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL 464 (1008)
T ss_pred HhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc
Confidence 3468999999999999999999887641 23667788877666553
No 206
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=69.28 E-value=17 Score=34.81 Aligned_cols=42 Identities=10% Similarity=0.209 Sum_probs=31.1
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
....+.++.|||+||-|+-++.+|...+.. .+..+|.|.-.+
T Consensus 22 ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVG--sItIvDdD~Ve~ 63 (287)
T PTZ00245 22 QQLMHTSVALHGVAGAAAEAAKNLVLAGVR--AVAVADEGLVTD 63 (287)
T ss_pred HHHhhCeEEEECCCchHHHHHHHHHHcCCC--eEEEecCCccch
Confidence 445677999999999999999999886543 234466655444
No 207
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=69.18 E-value=8.1 Score=35.61 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
|||.|||.|..|+.++..|.+. +.+..+++.+.+.++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~---g~~V~~~~r~~~~~~ 38 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN---GHDVTLWARDPEQAA 38 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCEEEEEECCHHHHH
Confidence 6899999999999999999875 345566677655443
No 208
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=69.12 E-value=43 Score=28.62 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEEc-CcccccCCCCCCCchhhHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQI-GCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~i-G~~~t~G~GaG~np~~G~eaa 187 (279)
..+++.|.|. |+.|..++.++.++ +.+.+++..+...+.... +. ...++.+ --+. .++ +..
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~ 69 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAAD---GAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDV-------SDE----AAV 69 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccC-------CCH----HHH
Confidence 4468999996 88899999999985 456777777655443210 00 0011111 0111 122 223
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
....+.+.+.+...|.|+..+|....
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag~~~~ 95 (246)
T PRK05653 70 RALIEAAVEAFGALDILVNNAGITRD 95 (246)
T ss_pred HHHHHHHHHHhCCCCEEEECCCcCCC
Confidence 44455566666788998888776544
No 209
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=69.06 E-value=79 Score=28.36 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=57.6
Q ss_pred CCCceEEEEeeCcchHH---HHHHHHHc---CCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHH
Q 044090 112 NNEAKIKVIGVGGGGSN---AVNRMIES---SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMN 185 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~N---IVd~l~~~---~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~e 185 (279)
.++.||.+.|-||--++ ++.+|.-+ +.+....+++.||...|.... .+ + |
T Consensus 39 ~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~----------ND----------y--~-- 94 (176)
T COG0279 39 LNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIA----------ND----------Y--G-- 94 (176)
T ss_pred HcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhh----------cc----------c--c--
Confidence 35778999998888877 34444322 235677899999998886531 11 1 1
Q ss_pred HHHHHHHHHHHHh-cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEE
Q 044090 186 AANESKVAIEEAI-SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA 237 (279)
Q Consensus 186 aa~e~~e~I~~~L-e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIv 237 (279)
.++...+--+++ ..=|.++=+...| -|.-.-..++.|++.++.|+++.
T Consensus 95 -yd~vFsRqveA~g~~GDvLigISTSG---NS~nVl~Ai~~Ak~~gm~vI~lt 143 (176)
T COG0279 95 -YDEVFSRQVEALGQPGDVLIGISTSG---NSKNVLKAIEAAKEKGMTVIALT 143 (176)
T ss_pred -HHHHHHHHHHhcCCCCCEEEEEeCCC---CCHHHHHHHHHHHHcCCEEEEEe
Confidence 123333333333 4556655554333 13333333567888999998873
No 210
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=68.73 E-value=96 Score=29.40 Aligned_cols=52 Identities=25% Similarity=0.437 Sum_probs=34.7
Q ss_pred hcCCCEEEEEeecCCCcccCHHHHHH---HHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEe
Q 044090 198 ISGADMIFVTAGMGGGTGTGAAPVIA---GIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIP 270 (279)
Q Consensus 198 Le~~D~vfIvAGLGGGTGSG~aPvIa---eiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~D 270 (279)
+..-|.+|++ +.||-+|.+. +.+++.|.++++|...|.+ .|.+.+|.+|..+
T Consensus 129 l~~~DvvI~I------S~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s---------------~La~~aD~~I~~~ 183 (299)
T PRK05441 129 LTAKDVVVGI------AASGRTPYVIGALEYARERGALTIGISCNPGS---------------PLSKEADIAIEVV 183 (299)
T ss_pred CCCCCEEEEE------eCCCCCHHHHHHHHHHHHCCCeEEEEECCCCC---------------hhhHhCCEEEEcC
Confidence 5666777666 3455566665 5567899999999866543 3455677776665
No 211
>PLN00203 glutamyl-tRNA reductase
Probab=68.45 E-value=46 Score=34.25 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
....+|.|||.|..|..++..|...+. -+.+++|-+.+....
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~--~~V~V~nRs~era~~ 305 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGC--TKMVVVNRSEERVAA 305 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCC--CeEEEEeCCHHHHHH
Confidence 567899999999999999999987542 246777877655443
No 212
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=68.37 E-value=8.4 Score=35.61 Aligned_cols=37 Identities=27% Similarity=0.634 Sum_probs=31.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
.||.|||.|..|..|+..+... +.+.+++|.+.+.++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~---G~~V~~~d~~~~~~~ 41 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA---GMDVWLLDSDPAALS 41 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc---CCeEEEEeCCHHHHH
Confidence 4799999999999999999875 568888998877764
No 213
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=68.10 E-value=8 Score=35.91 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=31.1
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.||.|||.|..|+.|+..|.+. +.+.+++|.+.+.++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~---g~~V~~~d~~~~~~~~ 42 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK---GLQVVLIDVMEGALER 42 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC---CCeEEEEECCHHHHHH
Confidence 4799999999999999999875 4577788887766654
No 214
>PLN02206 UDP-glucuronate decarboxylase
Probab=68.07 E-value=53 Score=32.66 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=28.3
Q ss_pred CCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 111 NNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 111 ~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
....|||+|.|. |-.|+.++.+|++. +.+.++++.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~---G~~V~~ld~ 151 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMAR---GDSVIVVDN 151 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHC---cCEEEEEeC
Confidence 345689999996 99999999999985 557777764
No 215
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=68.07 E-value=26 Score=34.36 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=25.8
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
.+|.|||+|+.|-..+..|.+.+ .+++....|.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~-~~~~v~~~D~ 40 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQ-PQLTVKVIDT 40 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcC-CCCeEEEEeC
Confidence 57999999999999999998863 1256556564
No 216
>PRK07326 short chain dehydrogenase; Provisional
Probab=67.76 E-value=29 Score=29.86 Aligned_cols=84 Identities=17% Similarity=0.289 Sum_probs=49.9
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCCCCeEE-cCcccccCCCCCCCchhhHHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRLQ-IGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
+.++.|+|. |+.|..++.+|.++ +.+.++++.+...+.... +....++. +--+. .+ .+..++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~-------~~----~~~~~~ 71 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAE---GYKVAITARDQKELEEAAAELNNKGNVLGLAADV-------RD----EADVQR 71 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC---CCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccC-------CC----HHHHHH
Confidence 468999986 88999999999874 567778887765544310 00001121 11011 11 223344
Q ss_pred HHHHHHHHhcCCCEEEEEeecC
Q 044090 190 SKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLG 211 (279)
..+++.+.+..+|.||..+|.+
T Consensus 72 ~~~~~~~~~~~~d~vi~~ag~~ 93 (237)
T PRK07326 72 AVDAIVAAFGGLDVLIANAGVG 93 (237)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 5556666677899988887544
No 217
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=67.58 E-value=52 Score=29.38 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=49.6
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA 193 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~ 193 (279)
++|+|.|. |-.|++++++|.+. +.+.++++.......... ..-....+. . ...+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~---g~~V~~~~r~~~~~~~~~--~~~~~~~~d-~------------------~~~~~ 56 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAA---GHDVRGLDRLRDGLDPLL--SGVEFVVLD-L------------------TDRDL 56 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhC---CCeEEEEeCCCccccccc--cccceeeec-c------------------cchHH
Confidence 34999995 99999999999986 677788876433322210 000111110 0 11145
Q ss_pred HHHHhcCC-CEEEEEeecCCCcccC
Q 044090 194 IEEAISGA-DMIFVTAGMGGGTGTG 217 (279)
Q Consensus 194 I~~~Le~~-D~vfIvAGLGGGTGSG 217 (279)
+.+.++.+ |+||-+++.....+..
T Consensus 57 ~~~~~~~~~d~vih~aa~~~~~~~~ 81 (314)
T COG0451 57 VDELAKGVPDAVIHLAAQSSVPDSN 81 (314)
T ss_pred HHHHHhcCCCEEEEccccCchhhhh
Confidence 56666666 9999999988877664
No 218
>PRK07825 short chain dehydrogenase; Provisional
Probab=67.54 E-value=30 Score=30.82 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=51.6
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
.++++.|.|- |+.|..++.+|.+. +.+.+++.-+.+.+........ ++. +--+. .+ .+..++.
T Consensus 4 ~~~~ilVtGasggiG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~D~-------~~----~~~~~~~ 68 (273)
T PRK07825 4 RGKVVAITGGARGIGLATARALAAL---GARVAIGDLDEALAKETAAELG-LVVGGPLDV-------TD----PASFAAF 68 (273)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhc-cceEEEccC-------CC----HHHHHHH
Confidence 3568999997 77888999999874 5677777767666543210000 111 11111 12 2334555
Q ss_pred HHHHHHHhcCCCEEEEEeecCC
Q 044090 191 KVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.+++.+.....|.++..+|.+.
T Consensus 69 ~~~~~~~~~~id~li~~ag~~~ 90 (273)
T PRK07825 69 LDAVEADLGPIDVLVNNAGVMP 90 (273)
T ss_pred HHHHHHHcCCCCEEEECCCcCC
Confidence 6667777778998888887653
No 219
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=67.49 E-value=9 Score=35.23 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=28.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
++|.|||.|..|..++..+.+. +.+.++.|.+...+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~---g~~v~~~d~~~~~~ 38 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA---GYSLVVYDRNPEAV 38 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC---CCeEEEEcCCHHHH
Confidence 6899999999999999999874 45666677665544
No 220
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=67.20 E-value=8.8 Score=34.77 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=29.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
|||.|||.|-.|..++..|.+.+..-..+++.|-+.+.++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~ 40 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAA 40 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHH
Confidence 5899999999999999999886542233455666655443
No 221
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=67.10 E-value=23 Score=33.37 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
..+++|.|||.|..|..++..+...+ ..+.+++|.+.+..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g--~~~V~v~~r~~~ra 215 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKG--VAEITIANRTYERA 215 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcC--CCEEEEEeCCHHHH
Confidence 46889999999999999998887633 24567788876543
No 222
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton]
Probab=66.97 E-value=20 Score=36.49 Aligned_cols=82 Identities=15% Similarity=0.193 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhcCCC---EEEEEeecCCCcccCHHHHHHHH-HHHcC---CcEEEEEccCCCC-chhHH------HHHHH
Q 044090 188 NESKVAIEEAISGAD---MIFVTAGMGGGTGTGAAPVIAGI-AKSMG---ILTVGIATVPFCF-EGRRR------AIQAQ 253 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D---~vfIvAGLGGGTGSG~aPvIaei-ake~g---i~tvaIvtlPf~~-Eg~~r------~~NA~ 253 (279)
+|..++++-.+|.|| +|.++.=+-+|-| |.|...++. ..|++ +++.+..+-|++. +..++ ..|-.
T Consensus 188 eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~a 266 (483)
T KOG2530|consen 188 EEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQDEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKA 266 (483)
T ss_pred HHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHHHhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHH
Confidence 556777899999999 7888899999884 555555554 45664 6777777777754 33333 44677
Q ss_pred HHHHHHHHhCCEEEEEe
Q 044090 254 EGVANLRNNVDTLIVIP 270 (279)
Q Consensus 254 ~gL~~L~e~aD~vIv~D 270 (279)
.++.+|.+.++..+.+.
T Consensus 267 ls~~qLs~~~~l~~PL~ 283 (483)
T KOG2530|consen 267 LSLSQLSQECSLYFPLS 283 (483)
T ss_pred HHHHHHhhhcceeeccc
Confidence 78889998888776653
No 223
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=66.95 E-value=8.4 Score=35.26 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=27.9
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCC-CcceEEEEeCcH
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSM-TGVEFWIVNTDA 150 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~-~~ve~iavNTD~ 150 (279)
..|||.|||+|-.|+.++..|.+.+. ..-+.++.+-+.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~ 40 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSK 40 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCCh
Confidence 45899999999999999999998752 222355555443
No 224
>PRK07774 short chain dehydrogenase; Provisional
Probab=66.56 E-value=49 Score=28.69 Aligned_cols=87 Identities=17% Similarity=0.317 Sum_probs=52.8
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeE-EcCcccccCCCCCCCchhhHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRL-QIGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri-~iG~~~t~G~GaG~np~~G~eaa 187 (279)
.+.++.|.|- |+.|..++..|.+. +.+.+.++.+...+.... +. ...++ .+-.+.+ + .+..
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~---g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~----~~~~ 70 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALARE---GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVS-------D----PDSA 70 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------C----HHHH
Confidence 4468999997 89999999999885 567777877654432210 00 01111 1211111 1 2234
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
++..+++.+.+...|.||-.+|..+.
T Consensus 71 ~~~~~~~~~~~~~id~vi~~ag~~~~ 96 (250)
T PRK07774 71 KAMADATVSAFGGIDYLVNNAAIYGG 96 (250)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCcCC
Confidence 44556666677789999999887653
No 225
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=66.13 E-value=9.5 Score=35.63 Aligned_cols=37 Identities=19% Similarity=0.405 Sum_probs=32.2
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
||.|||.|..|..|+-.+... +.+...+|.+.+.++.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~---G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA---GVDVLVFETTEELATA 43 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC---CCEEEEEECCHHHHHH
Confidence 899999999999999888774 6788889998888765
No 226
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=65.81 E-value=11 Score=30.38 Aligned_cols=93 Identities=22% Similarity=0.321 Sum_probs=53.1
Q ss_pred eEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHH--HHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090 116 KIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQ--AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV 192 (279)
Q Consensus 116 kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~--~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e 192 (279)
||.||| -|-.|..+++.|.++ +.++...+=.... ....... .....+. .+... ++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~~---~~~~~~~---------~~~~~-----~~--- 58 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSEV---FPHPKGF---------EDLSV-----ED--- 58 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHHT---TGGGTTT---------EEEBE-----EE---
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeehh---ccccccc---------cceeE-----ee---
Confidence 789999 888999999888884 5677555432222 1110000 0000000 00000 00
Q ss_pred HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (279)
Q Consensus 193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI 236 (279)
.-.+.+.++|.+|++ |+++.+..++..+.+.|+.+|..
T Consensus 59 ~~~~~~~~~Dvvf~a------~~~~~~~~~~~~~~~~g~~ViD~ 96 (121)
T PF01118_consen 59 ADPEELSDVDVVFLA------LPHGASKELAPKLLKAGIKVIDL 96 (121)
T ss_dssp TSGHHHTTESEEEE-------SCHHHHHHHHHHHHHTTSEEEES
T ss_pred cchhHhhcCCEEEec------CchhHHHHHHHHHhhCCcEEEeC
Confidence 112344899999996 77788888887777788877665
No 227
>PRK05866 short chain dehydrogenase; Provisional
Probab=65.25 E-value=57 Score=29.93 Aligned_cols=88 Identities=18% Similarity=0.325 Sum_probs=52.1
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeE-EcCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRL-QIGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri-~iG~~~t~G~GaG~np~~G~ea 186 (279)
..+.++.|.|. ||.|..++..|.++ +.+.+++.-+.+.++... .. ...++ .+--+. .|+ +.
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~---G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl-------~d~----~~ 103 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARR---GATVVAVARREDLLDAVADRITRAGGDAMAVPCDL-------SDL----DA 103 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccC-------CCH----HH
Confidence 45568999997 88899999999885 567777766555443310 00 00011 111111 122 33
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
.++..+.+.+.+...|.++..+|.+..
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~~~~ 130 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGRSIR 130 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 445566666677789999988876543
No 228
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=65.21 E-value=69 Score=35.91 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=57.3
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcce-------------EEEEeCcHHHHhcCCCCCCC--eEEcCcccccCCCCCC
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVE-------------FWIVNTDAQAMKVSPVIPEN--RLQIGCELTRGLGAGG 178 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve-------------~iavNTD~~~L~~s~v~a~~--ri~iG~~~t~G~GaG~ 178 (279)
..||.|||.|..|..+++.|.+. .+++ ..+.|.+.+..+......++ -+.+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD----------- 635 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD----------- 635 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC--cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee-----------
Confidence 55899999999999999999765 3333 33345554443321000000 01000
Q ss_pred CchhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090 179 NPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (279)
Q Consensus 179 np~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI 236 (279)
-.+.+++.+.++++|+|+++ +..-.-+.+++.+-+.|+.++..
T Consensus 636 ---------v~D~e~L~~~v~~~DaVIsa------lP~~~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 636 ---------VSDSESLLKYVSQVDVVISL------LPASCHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred ---------cCCHHHHHHhhcCCCEEEEC------CCchhhHHHHHHHHHcCCCEEEC
Confidence 01345677777889998884 33445677888888888766543
No 229
>PLN02256 arogenate dehydrogenase
Probab=65.11 E-value=11 Score=35.77 Aligned_cols=35 Identities=17% Similarity=0.340 Sum_probs=28.3
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
...++|.|||.|..|..++..+.+. +.+.++++.+
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~---G~~V~~~d~~ 68 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ---GHTVLATSRS 68 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC---CCEEEEEECc
Confidence 4668999999999999999999874 3566777654
No 230
>PRK06841 short chain dehydrogenase; Provisional
Probab=65.11 E-value=43 Score=29.23 Aligned_cols=87 Identities=14% Similarity=0.236 Sum_probs=49.9
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhHHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
..+.++.|.|. |+.|..++.+|.+. +.+.+++..+.............++ .+-.+.+ + .+..++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~---G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~-------~----~~~~~~ 78 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAK---GARVALLDRSEDVAEVAAQLLGGNAKGLVCDVS-------D----SQSVEA 78 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHhhCCceEEEEecCC-------C----HHHHHH
Confidence 45668999996 88999999999885 5576666655432211100001111 1111111 1 223344
Q ss_pred HHHHHHHHhcCCCEEEEEeecCC
Q 044090 190 SKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
..+++.+.+...|.|+..+|...
T Consensus 79 ~~~~~~~~~~~~d~vi~~ag~~~ 101 (255)
T PRK06841 79 AVAAVISAFGRIDILVNSAGVAL 101 (255)
T ss_pred HHHHHHHHhCCCCEEEECCCCCC
Confidence 55566666678899988887653
No 231
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.98 E-value=9.3 Score=35.27 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=31.7
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.||.|||.|-.|..|+..+.+. +.+.+++|.|.+.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~---G~~V~~~d~~~~~~~~ 39 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS---GFQTTLVDIKQEQLES 39 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC---CCcEEEEeCCHHHHHH
Confidence 3799999999999999998875 5677888988777765
No 232
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=64.86 E-value=13 Score=28.97 Aligned_cols=92 Identities=18% Similarity=0.330 Sum_probs=57.6
Q ss_pred EEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHHHH
Q 044090 117 IKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEE 196 (279)
Q Consensus 117 I~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~~ 196 (279)
|.|+|.|..|-.+++.|.+. +.++++++.|.+......- ..-.+..|. ..++ +.+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~---~~~vvvid~d~~~~~~~~~-~~~~~i~gd--------~~~~-----------~~l~~ 57 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG---GIDVVVIDRDPERVEELRE-EGVEVIYGD--------ATDP-----------EVLER 57 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT---TSEEEEEESSHHHHHHHHH-TTSEEEES---------TTSH-----------HHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhC---CCEEEEEECCcHHHHHHHh-ccccccccc--------chhh-----------hHHhh
Confidence 67999999999999999883 4789999999877655211 112333332 1222 22222
Q ss_pred -HhcCCCEEEEEeecCCCccc-CHHHHHHHHHHHc-C-CcEEEEE
Q 044090 197 -AISGADMIFVTAGMGGGTGT-GAAPVIAGIAKSM-G-ILTVGIA 237 (279)
Q Consensus 197 -~Le~~D~vfIvAGLGGGTGS-G~aPvIaeiake~-g-i~tvaIv 237 (279)
-++.++.++++.. . -..-.++..+|++ + ..+++.+
T Consensus 58 a~i~~a~~vv~~~~------~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 58 AGIEKADAVVILTD------DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp TTGGCESEEEEESS------SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred cCccccCEEEEccC------CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 4679998888643 3 3345567788874 4 5656654
No 233
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=64.82 E-value=56 Score=29.79 Aligned_cols=49 Identities=29% Similarity=0.488 Sum_probs=33.5
Q ss_pred CEEEEEeecCCCcccCHH---HHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090 202 DMIFVTAGMGGGTGTGAA---PVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271 (279)
Q Consensus 202 D~vfIvAGLGGGTGSG~a---PvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN 271 (279)
|.|+.+. |||-+ -.++..+|++++.+++|...|-+ .|-+.+|.+++++-
T Consensus 88 DvviaiS------~SGeT~el~~~~~~aK~~g~~liaiT~~~~S---------------sLak~aDvvl~ip~ 139 (202)
T COG0794 88 DVVIAIS------GSGETKELLNLAPKAKRLGAKLIAITSNPDS---------------SLAKAADVVLVIPV 139 (202)
T ss_pred CEEEEEe------CCCcHHHHHHHHHHHHHcCCcEEEEeCCCCC---------------hHHHhcCeEEEccC
Confidence 6666653 34433 44567789999999999888873 34556777777764
No 234
>PLN02427 UDP-apiose/xylose synthase
Probab=64.76 E-value=36 Score=32.36 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=27.0
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
.|||+|.|. |-.|++++.+|++.+ +.+.++++.+
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~r~ 48 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTET--PHKVLALDVY 48 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEecC
Confidence 479999995 999999999999863 3566777643
No 235
>PRK07680 late competence protein ComER; Validated
Probab=64.65 E-value=11 Score=34.62 Aligned_cols=40 Identities=23% Similarity=0.308 Sum_probs=29.8
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCC-CcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSM-TGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~-~~ve~iavNTD~~~L~ 154 (279)
|+|.|||.|..|..++..|.+.+. ...+.+++|-+.+.++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~ 41 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAY 41 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHH
Confidence 589999999999999999988752 2234566676655543
No 236
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=64.65 E-value=13 Score=34.60 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=30.8
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
++|.|||.|..|..++..+.+.+. ..+.+++|.+.+.++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~-~~~V~~~dr~~~~~~~ 46 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGL-AGEIVGADRSAETRAR 46 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCC-CcEEEEEECCHHHHHH
Confidence 589999999999999999987642 2366777887665543
No 237
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=64.53 E-value=35 Score=37.83 Aligned_cols=39 Identities=33% Similarity=0.518 Sum_probs=30.1
Q ss_pred CCCceEEEEeeCc-----------chHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGVGG-----------GGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGIGg-----------aG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
.+-.||+|||-|. .|.-++.+|.+ .|++.+++|++....
T Consensus 4 ~~~~kvlviG~g~~~igq~~e~d~sg~q~~kalke---~G~~vi~v~~np~~~ 53 (1050)
T TIGR01369 4 TDIKKILVIGSGPIVIGQAAEFDYSGSQACKALKE---EGYRVILVNSNPATI 53 (1050)
T ss_pred CCCcEEEEECCCcchhcchhcccchHHHHHHHHHH---cCCEEEEEecchhhc
Confidence 3456999999886 36678888876 478999999987653
No 238
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=64.52 E-value=1.3e+02 Score=28.73 Aligned_cols=97 Identities=16% Similarity=0.313 Sum_probs=59.6
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
...++|.|+=-|-+|-.++.+++++ +++-+|+++= |.. +.-.|.. -.++..+..+
T Consensus 3 ~~~~~IgvFDSGVGGLsVlrei~~~-LP~e~~iY~~-D~a-----------~~PYG~k------------s~e~I~~~~~ 57 (269)
T COG0796 3 EPQPPIGVFDSGVGGLSVLREIRRQ-LPDEDIIYVG-DTA-----------RFPYGEK------------SEEEIRERTL 57 (269)
T ss_pred ccCCeEEEEECCCCcHHHHHHHHHH-CCCCcEEEEe-cCC-----------CCCCCCC------------CHHHHHHHHH
Confidence 3567899999999999999999775 4566776652 211 1112211 1123333344
Q ss_pred HHHHHHh-cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 192 VAIEEAI-SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 192 e~I~~~L-e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
+-+..++ .++++++|.|- |-.+-.+-++.+++++++++++ |-
T Consensus 58 ~i~~~l~~~~ik~lVIACN------TASa~al~~LR~~~~iPVvGvi--Pa 100 (269)
T COG0796 58 EIVDFLLERGIKALVIACN------TASAVALEDLREKFDIPVVGVI--PA 100 (269)
T ss_pred HHHHHHHHcCCCEEEEecc------hHHHHHHHHHHHhCCCCEEEec--cc
Confidence 4444444 36999988763 3334444455566889999987 65
No 239
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=64.30 E-value=11 Score=34.83 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=31.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
.||.|||.|-.|..|+..+... +.+.+.+|.+.+.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~ 40 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVDVSEEILK 40 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc---CCeEEEEeCCHHHHH
Confidence 4799999999999999998875 457888898887765
No 240
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=64.28 E-value=13 Score=29.01 Aligned_cols=94 Identities=18% Similarity=0.302 Sum_probs=57.4
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA 193 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~ 193 (279)
+||.|||+|..|...+..+.+.. .+++..+ +|.|.+....... ...+. ....
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~-~~~~v~~v~d~~~~~~~~~~~--~~~~~------------------------~~~~ 53 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS-PDFEVVAVCDPDPERAEAFAE--KYGIP------------------------VYTD 53 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT-TTEEEEEEECSSHHHHHHHHH--HTTSE------------------------EESS
T ss_pred CEEEEECCcHHHHHHHHHHHhcC-CCcEEEEEEeCCHHHHHHHHH--Hhccc------------------------chhH
Confidence 58999999999999998888763 4567654 5777765543200 00000 0011
Q ss_pred HHHHhc--CCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCC
Q 044090 194 IEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCF 243 (279)
Q Consensus 194 I~~~Le--~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~ 243 (279)
++++++ ..|+++|+ |.+..=..+++.+-+.|+.+ ++-.|+..
T Consensus 54 ~~~ll~~~~~D~V~I~------tp~~~h~~~~~~~l~~g~~v--~~EKP~~~ 97 (120)
T PF01408_consen 54 LEELLADEDVDAVIIA------TPPSSHAEIAKKALEAGKHV--LVEKPLAL 97 (120)
T ss_dssp HHHHHHHTTESEEEEE------SSGGGHHHHHHHHHHTTSEE--EEESSSSS
T ss_pred HHHHHHhhcCCEEEEe------cCCcchHHHHHHHHHcCCEE--EEEcCCcC
Confidence 444554 78999996 34444555555555668754 44477743
No 241
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=64.11 E-value=38 Score=36.23 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=23.1
Q ss_pred eEEEEeeCcchHHH-HHHHHHcCCCcceEEEEeC
Q 044090 116 KIKVIGVGGGGSNA-VNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 116 kI~VIGIGgaG~NI-Vd~l~~~~~~~ve~iavNT 148 (279)
+|.|||+|+.|-.. +..|.+ .|++....|.
T Consensus 6 ~i~viG~G~sG~salA~~L~~---~G~~V~~sD~ 36 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLD---RGYSVSGSDL 36 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHH---CCCeEEEECC
Confidence 59999999999998 555554 4677777665
No 242
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=63.82 E-value=1.3e+02 Score=29.96 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=29.9
Q ss_pred CCCceEEEEee----CcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 112 NNEAKIKVIGV----GGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 112 ~~~~kI~VIGI----GgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
++..+|.|||. |.-|..++..|.+.+.++ +.+.||-...
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g-~v~~Vnp~~~ 47 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKG-KIYPVNPKAG 47 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCC-cEEEECCCCC
Confidence 45568999999 668999999998876544 5678887544
No 243
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=63.70 E-value=28 Score=30.57 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=51.6
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCC-CCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIP-ENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a-~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
..+.++.|.|. |+.|..++.+|.+. +.+.+.++.+...++... +.. ..++. +--+. .| .+.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~-------~~----~~~ 73 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQA---GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDV-------TD----HDA 73 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccC-------CC----HHH
Confidence 44678999996 88999999999884 567777777665543210 000 01111 11111 11 233
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.++..+++.+.+...|.||..+|...
T Consensus 74 ~~~~~~~~~~~~~~~d~li~~ag~~~ 99 (255)
T PRK07523 74 VRAAIDAFEAEIGPIDILVNNAGMQF 99 (255)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 44455566666778898888776643
No 244
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=63.69 E-value=17 Score=35.28 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=26.1
Q ss_pred CCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
..++|.||| .|..|..++..|.+.+ .+..++|.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G---~~V~~~d~ 130 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSG---YQVRILEQ 130 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCC---CeEEEeCC
Confidence 457999999 9999999999998854 44555553
No 245
>PRK06180 short chain dehydrogenase; Provisional
Probab=63.64 E-value=61 Score=29.07 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=49.7
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
..++.|.|. |+.|..++.+|.+. +.+.+++..+...+.........++. +--+. .++ +...+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~---G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~-------~d~----~~~~~~~ 69 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA---GHRVVGTVRSEAARADFEALHPDRALARLLDV-------TDF----DAIDAVV 69 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC---cCEEEEEeCCHHHHHHHHhhcCCCeeEEEccC-------CCH----HHHHHHH
Confidence 457999997 77899999999874 56777887776655432110011111 11111 112 2334445
Q ss_pred HHHHHHhcCCCEEEEEeecC
Q 044090 192 VAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLG 211 (279)
+.+.+.+...|.++-.+|..
T Consensus 70 ~~~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 70 ADAEATFGPIDVLVNNAGYG 89 (277)
T ss_pred HHHHHHhCCCCEEEECCCcc
Confidence 56666667899988887764
No 246
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=63.49 E-value=19 Score=35.00 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=24.5
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcC
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESS 137 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~ 137 (279)
.+....+|.+||+|-.|..|+..|++.+
T Consensus 31 ~~~s~~~iGFIGLG~MG~~M~~nLik~G 58 (327)
T KOG0409|consen 31 ITPSKTRIGFIGLGNMGSAMVSNLIKAG 58 (327)
T ss_pred CCcccceeeEEeeccchHHHHHHHHHcC
Confidence 3446789999999999999999999975
No 247
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=63.49 E-value=77 Score=27.24 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=50.4
Q ss_pred CCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCC-CCeEEc-CcccccCCCCCCCchhhHHHH
Q 044090 113 NEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIP-ENRLQI-GCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 113 ~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a-~~ri~i-G~~~t~G~GaG~np~~G~eaa 187 (279)
..+++.|.| -|+.|..++.+|.++ +.+.+++..+...+.... ... ..++.+ --+. .++ +..
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl-------~~~----~~~ 70 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAAD---GAEVIVVDICGDDAAATAELVEAAGGKARARQVDV-------RDR----AAL 70 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC-------CCH----HHH
Confidence 346899999 578899999999885 467777776644332210 000 011211 0011 122 233
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
++..+++.+.+..+|.|+..++..+.
T Consensus 71 ~~~~~~~~~~~~~~d~vi~~ag~~~~ 96 (251)
T PRK12826 71 KAAVAAGVEDFGRLDILVANAGIFPL 96 (251)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 44555666666789999888876654
No 248
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=63.44 E-value=49 Score=31.63 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=24.6
Q ss_pred ceEEEEeeC-cchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGVG-GGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGIG-gaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
+||.|||.- ..|..+++.|.+++.+.++..++-++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~ 37 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA 37 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc
Confidence 689999974 45666777776666666776667554
No 249
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=63.24 E-value=13 Score=41.17 Aligned_cols=54 Identities=9% Similarity=0.187 Sum_probs=36.9
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~ 169 (279)
....+.+|+|||+||-|+.|+..|...+.. .+..+|.|.-.+... ..++++..+
T Consensus 20 ~kL~~s~VLIiG~gGLG~EiaKnL~laGVg--~iti~D~d~v~~sdL----~rQf~~~~~ 73 (1008)
T TIGR01408 20 QKMAKSNVLISGMGGLGLEIAKNLVLAGVK--SVTLHDTEKCQAWDL----SSNFFLSED 73 (1008)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCC--eEEEEeCCeecHhhC----CCceecchH
Confidence 345677999999999999999999886543 234467765554443 235555543
No 250
>PRK07831 short chain dehydrogenase; Provisional
Probab=63.02 E-value=90 Score=27.50 Aligned_cols=87 Identities=21% Similarity=0.361 Sum_probs=50.4
Q ss_pred CCCceEEEEee-C-cchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--C---CCCCeEE-cCcccccCCCCCCCchhh
Q 044090 112 NNEAKIKVIGV-G-GGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V---IPENRLQ-IGCELTRGLGAGGNPSVG 183 (279)
Q Consensus 112 ~~~~kI~VIGI-G-gaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v---~a~~ri~-iG~~~t~G~GaG~np~~G 183 (279)
..+.++.|.|. | |.|..++..|.+. +.+.++++.+.+.++... + ....++. +--+. .++
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~---G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~--- 81 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEE---GARVVISDIHERRLGETADELAAELGLGRVEAVVCDV-------TSE--- 81 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccC-------CCH---
Confidence 44578999997 6 7999999999885 455666665554443210 0 0011221 11111 122
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 184 MNAANESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
+..++..+++.+.+...|.||-.+|...
T Consensus 82 -~~~~~~~~~~~~~~g~id~li~~ag~~~ 109 (262)
T PRK07831 82 -AQVDALIDAAVERLGRLDVLVNNAGLGG 109 (262)
T ss_pred -HHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 2344455556566678899999888643
No 251
>PTZ00489 glutamate 5-kinase; Provisional
Probab=63.00 E-value=60 Score=30.36 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=27.9
Q ss_pred HHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHh
Q 044090 227 KSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNN 262 (279)
Q Consensus 227 ke~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~ 262 (279)
.++++++..++..-..++.+.+..|+...+++|.+.
T Consensus 92 ~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~ 127 (264)
T PTZ00489 92 QKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISH 127 (264)
T ss_pred HhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHC
Confidence 346778877776667777778888999999999865
No 252
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=62.94 E-value=60 Score=31.41 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=27.4
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
+||.|+|. |-.|..+++-|.+++.+.++...+-+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~ 40 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS 40 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc
Confidence 79999998 888888998888777677776666443
No 253
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=62.68 E-value=12 Score=34.99 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=30.1
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
++|.|||.|-.|..++..+.+. +.+.+++|-+.+.++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~---G~~V~v~d~~~~~~~ 39 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA---GHEVRLWDADPAAAA 39 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC---CCeeEEEeCCHHHHH
Confidence 5899999999999999999885 457777887765444
No 254
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=62.56 E-value=13 Score=35.00 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=29.4
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
.|||.|||.|..|.-++..|.+. +.+...+|.+.+..
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~---G~~V~~~~r~~~~~ 40 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK---GVPVRLWARRPEFA 40 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC---CCeEEEEeCCHHHH
Confidence 47999999999999999999875 45566677765543
No 255
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=62.54 E-value=13 Score=33.88 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=27.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
|||.|||.|..|+-++..|.+.+ .+...++.+.+.+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g---~~V~~~~r~~~~~ 36 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAG---HDVTLVARRGAHL 36 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCC---CeEEEEECChHHH
Confidence 68999999999999999998754 4555555544443
No 256
>PRK06179 short chain dehydrogenase; Provisional
Probab=62.43 E-value=61 Score=28.66 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=49.1
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV 192 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e 192 (279)
..++.|.|. |+-|..++.+|.+. +.+.+++.-+...+... ..-.+..+ +. .|+ +..++..+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~---g~~V~~~~r~~~~~~~~---~~~~~~~~-D~-------~d~----~~~~~~~~ 65 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA---GYRVFGTSRNPARAAPI---PGVELLEL-DV-------TDD----ASVQAAVD 65 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC---CCEEEEEeCChhhcccc---CCCeeEEe-ec-------CCH----HHHHHHHH
Confidence 346888885 67788899999875 56777777665554321 11111111 11 122 23344555
Q ss_pred HHHHHhcCCCEEEEEeecCC
Q 044090 193 AIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 193 ~I~~~Le~~D~vfIvAGLGG 212 (279)
.+.+.+...|.++..+|.+.
T Consensus 66 ~~~~~~g~~d~li~~ag~~~ 85 (270)
T PRK06179 66 EVIARAGRIDVLVNNAGVGL 85 (270)
T ss_pred HHHHhCCCCCEEEECCCCCC
Confidence 66666778999998887654
No 257
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=62.28 E-value=1.3e+02 Score=27.76 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=24.6
Q ss_pred hcCCCEEEEEeecCCCcccCHHHHHH---HHHHHcCCcEEEEEccCC
Q 044090 198 ISGADMIFVTAGMGGGTGTGAAPVIA---GIAKSMGILTVGIATVPF 241 (279)
Q Consensus 198 Le~~D~vfIvAGLGGGTGSG~aPvIa---eiake~gi~tvaIvtlPf 241 (279)
+..-|.+|++ +. ||-+|.+. +.+|+.|.++++|.-.|.
T Consensus 116 l~~~DvvI~I-S~-----SG~T~~vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 116 LTERDVVIGI-AA-----SGRTPYVLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCCEEEEE-eC-----CCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 3566766554 33 44445554 567889999999975554
No 258
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=62.23 E-value=81 Score=29.60 Aligned_cols=33 Identities=15% Similarity=0.152 Sum_probs=26.9
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
..+||.|.|. |-.|..++.+|++. +.+.++++-
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~---g~~V~~~d~ 47 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFL---NQTVIGLDN 47 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHC---CCEEEEEeC
Confidence 3479999996 99999999999986 457777764
No 259
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=61.98 E-value=24 Score=35.35 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=28.7
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
....+|.|||+|+.|+.++-.|...+.. .|..+|.|.
T Consensus 18 L~~s~VlliG~gglGsEilKNLvL~GIg--~~tIvD~~~ 54 (425)
T cd01493 18 LESAHVCLLNATATGTEILKNLVLPGIG--SFTIVDGSK 54 (425)
T ss_pred HhhCeEEEEcCcHHHHHHHHHHHHcCCC--eEEEECCCc
Confidence 4567999999999999999999886542 345567653
No 260
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.68 E-value=62 Score=28.05 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=49.6
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeE-EcCcccccCCCCCCCchhhHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRL-QIGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri-~iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
..++.|.|. |+.|..++.+|.++ +.+.+++..+...+.... +. ...++ .+--++ .++ +..+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~~~ 69 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKE---GAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDV-------TDE----EAIN 69 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC-------CCH----HHHH
Confidence 358999995 89999999999885 567777776555443210 00 00111 111111 122 2334
Q ss_pred HHHHHHHHHhcCCCEEEEEeecC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
+..+.+.+.+...|.||..++..
T Consensus 70 ~~~~~~~~~~~~~d~vi~~a~~~ 92 (258)
T PRK12429 70 AGIDYAVETFGGVDILVNNAGIQ 92 (258)
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 44556666677899988887754
No 261
>PRK06523 short chain dehydrogenase; Provisional
Probab=61.54 E-value=97 Score=27.14 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=48.8
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhHHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
..+.++.|.|. |+-|..++.+|.+. +.+.+++.-+..... ..++ .+--+. .++ +..+.
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~---G~~v~~~~r~~~~~~------~~~~~~~~~D~-------~~~----~~~~~ 66 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEA---GARVVTTARSRPDDL------PEGVEFVAADL-------TTA----EGCAA 66 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHC---CCEEEEEeCChhhhc------CCceeEEecCC-------CCH----HHHHH
Confidence 55678999996 68899999999875 567777765544321 1122 111111 122 23344
Q ss_pred HHHHHHHHhcCCCEEEEEeecC
Q 044090 190 SKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLG 211 (279)
..+++.+.+...|.++..+|..
T Consensus 67 ~~~~~~~~~~~id~vi~~ag~~ 88 (260)
T PRK06523 67 VARAVLERLGGVDILVHVLGGS 88 (260)
T ss_pred HHHHHHHHcCCCCEEEECCccc
Confidence 4556666677899888887753
No 262
>PRK06198 short chain dehydrogenase; Provisional
Probab=61.36 E-value=61 Score=28.35 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=49.0
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcce-EEEEeCcHHHHhcC--CC-CCCCeEE-cCcccccCCCCCCCchhhHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVE-FWIVNTDAQAMKVS--PV-IPENRLQ-IGCELTRGLGAGGNPSVGMN 185 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve-~iavNTD~~~L~~s--~v-~a~~ri~-iG~~~t~G~GaG~np~~G~e 185 (279)
....++.|+|. |+.|..++.++.+. +.+ .++++.+...+... .+ ....++. +--+. .++ +
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~---G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~~----~ 69 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAER---GAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADL-------SDV----E 69 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHC---CCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccC-------CCH----H
Confidence 45568999996 68899999999875 456 66676655443310 00 0011221 11111 122 3
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 186 AANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 186 aa~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
...+..+.+.+.+...|.++..+|..
T Consensus 70 ~~~~~~~~~~~~~g~id~li~~ag~~ 95 (260)
T PRK06198 70 DCRRVVAAADEAFGRLDALVNAAGLT 95 (260)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 34445556666667899988887653
No 263
>PRK08462 biotin carboxylase; Validated
Probab=61.16 E-value=31 Score=33.82 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=36.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~ 168 (279)
.||+|+|=|..+..++.++.+. |++.+++.++..........+++.+.+|.
T Consensus 5 k~ili~~~g~~~~~~~~~~~~~---G~~~v~~~~~~d~~~~~~~~ad~~~~~~~ 55 (445)
T PRK08462 5 KRILIANRGEIALRAIRTIQEM---GKEAIAIYSTADKDALYLKYADAKICIGG 55 (445)
T ss_pred CEEEEECCcHHHHHHHHHHHHc---CCCEEEEechhhcCCchhhhCCEEEEeCC
Confidence 5899999999999999998874 67889997755431111112577777764
No 264
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=61.06 E-value=1.6e+02 Score=28.47 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=27.9
Q ss_pred CCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 110 NNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 110 ~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
....+++|.|+|- |..|..++.+|.++ +.+.+++.-+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~---G~~V~~l~R~ 93 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRR---GYNVVAVARE 93 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEEec
Confidence 4466789999997 88899999999885 4555555443
No 265
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=61.02 E-value=13 Score=34.33 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=30.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.||.|||.|-.|..|+..+.+. +.+.+.+|-|.+.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~ 41 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH---GFDVTIYDISDEALEK 41 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc---CCeEEEEeCCHHHHHH
Confidence 5899999999999999888764 4577778877665543
No 266
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=61.01 E-value=14 Score=34.11 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=28.8
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
||.|||.|-.|..++..|.+. +.+.+++|.+.+.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~---G~~V~~~dr~~~~~~ 36 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA---GYQLHVTTIGPEVAD 36 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC---CCeEEEEcCCHHHHH
Confidence 589999999999999999885 456677777765544
No 267
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=60.98 E-value=48 Score=33.70 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=30.3
Q ss_pred CCceEEEEeeCcchHH-HHHHHHHc--CCCcceEEEEeCcHHHHhc
Q 044090 113 NEAKIKVIGVGGGGSN-AVNRMIES--SMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~N-IVd~l~~~--~~~~ve~iavNTD~~~L~~ 155 (279)
.++||.+||-|..+-- +|.-++.+ .++..+++.+|-|.+.|+.
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~ 47 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKI 47 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHH
Confidence 4679999996665543 33344444 3677899999999998874
No 268
>PLN02712 arogenate dehydrogenase
Probab=60.80 E-value=14 Score=39.08 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=30.3
Q ss_pred CCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 109 ~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
++...+++|.|||+|..|..++..|.+.+ .+.++++.+
T Consensus 47 ~~~~~~~kIgIIG~G~mG~slA~~L~~~G---~~V~~~dr~ 84 (667)
T PLN02712 47 PDNTTQLKIAIIGFGNYGQFLAKTLISQG---HTVLAHSRS 84 (667)
T ss_pred CccCCCCEEEEEccCHHHHHHHHHHHHCC---CEEEEEeCC
Confidence 35566789999999999999999998764 566666654
No 269
>PLN03139 formate dehydrogenase; Provisional
Probab=60.79 E-value=17 Score=36.04 Aligned_cols=36 Identities=11% Similarity=0.180 Sum_probs=29.7
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
.+..+.+|.|||+|..|..++.++... +++.+++|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~af---G~~V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPF---NCNLLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHC---CCEEEEECC
Confidence 457888999999999999999999764 556677764
No 270
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=60.74 E-value=67 Score=27.87 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=47.6
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH-HHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA-QAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~-~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
..+.++.|.|. |+.|..++.+|.+. +.+.++++.+. +.+.........++. +-.+. .++ +..+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~---G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~ 68 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEA---GADIVGAGRSEPSETQQQVEALGRRFLSLTADL-------SDI----EAIK 68 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEcCchHHHHHHHHHhcCCceEEEECCC-------CCH----HHHH
Confidence 34568999998 67799999999985 56766665432 122110000011221 11111 122 2233
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
...+++.+.....|.++..+|...
T Consensus 69 ~~~~~~~~~~~~~d~li~~ag~~~ 92 (248)
T TIGR01832 69 ALVDSAVEEFGHIDILVNNAGIIR 92 (248)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCC
Confidence 445556666678999888877643
No 271
>PRK06949 short chain dehydrogenase; Provisional
Probab=60.63 E-value=51 Score=28.73 Aligned_cols=86 Identities=10% Similarity=0.172 Sum_probs=50.4
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCC--C-CCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV--I-PENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v--~-a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
....+|.|.|. |+.|..++..+.+. +.+.+++..+.+.++.... . ...++. +--+. .++ +.
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~---G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~~----~~ 72 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQA---GAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDV-------TDY----QS 72 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecC-------CCH----HH
Confidence 55678999996 88999999999874 5677777766655432100 0 011221 10011 112 23
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
.++..+++.+.....|.++..+|..
T Consensus 73 ~~~~~~~~~~~~~~~d~li~~ag~~ 97 (258)
T PRK06949 73 IKAAVAHAETEAGTIDILVNNSGVS 97 (258)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3444555666667899888887753
No 272
>PRK07074 short chain dehydrogenase; Provisional
Probab=60.04 E-value=71 Score=27.94 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=48.6
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCC-CCCCeEE-cCcccccCCCCCCCchhhHHHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV-IPENRLQ-IGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v-~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
.++.|.|. |+.|..++.+|.+. +.+.++++.+...++.... ....++. +.-+. .++ +......
T Consensus 3 k~ilItGat~~iG~~la~~L~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~~ 68 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAA---GDRVLALDIDAAALAAFADALGDARFVPVACDL-------TDA----ASLAAAL 68 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhcCCceEEEEecC-------CCH----HHHHHHH
Confidence 37899997 78999999999885 5577777776665432100 0111221 11111 122 2233344
Q ss_pred HHHHHHhcCCCEEEEEeecCC
Q 044090 192 VAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGG 212 (279)
+++.+.....|.|+..+|..+
T Consensus 69 ~~~~~~~~~~d~vi~~ag~~~ 89 (257)
T PRK07074 69 ANAAAERGPVDVLVANAGAAR 89 (257)
T ss_pred HHHHHHcCCCCEEEECCCCCC
Confidence 455555567899888887654
No 273
>PRK06194 hypothetical protein; Provisional
Probab=59.82 E-value=52 Score=29.42 Aligned_cols=87 Identities=14% Similarity=0.232 Sum_probs=50.5
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCC-CCeEE-cCcccccCCCCCCCchhhHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIP-ENRLQ-IGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a-~~ri~-iG~~~t~G~GaG~np~~G~eaa 187 (279)
...+++|.|- |+.|..++.+|.+. +.+.++++.+...+.... ... ..++. +--+. .|+ +..
T Consensus 5 ~~k~vlVtGasggIG~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~d~----~~~ 70 (287)
T PRK06194 5 AGKVAVITGAASGFGLAFARIGAAL---GMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDV-------SDA----AQV 70 (287)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHC---CCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCC-------CCH----HHH
Confidence 3457899985 78899999999885 567777776654443210 000 11221 11111 122 233
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
++..+.+.+.....|.||-.||..+.
T Consensus 71 ~~~~~~~~~~~g~id~vi~~Ag~~~~ 96 (287)
T PRK06194 71 EALADAALERFGAVHLLFNNAGVGAG 96 (287)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 44455556666778999998887654
No 274
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=59.59 E-value=7.5 Score=31.69 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=46.0
Q ss_pred HHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHH------HHHHHHHHHHHHhCCE
Q 044090 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRA------IQAQEGVANLRNNVDT 265 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~------~NA~~gL~~L~e~aD~ 265 (279)
+++.++|+++.-.+|+.|-|... .++.+.+.++++..+++++.-..-.-.+...... ........++.+.+|.
T Consensus 2 ~~~~~~L~~A~rP~il~G~g~~~-~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDl 80 (137)
T PF00205_consen 2 DEAADLLSSAKRPVILAGRGARR-SGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADL 80 (137)
T ss_dssp HHHHHHHHH-SSEEEEE-HHHHH-TTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSE
T ss_pred HHHHHHHHhCCCEEEEEcCCcCh-hhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCE
Confidence 56777787777444444444332 4889999999999999976543322111100000 0112344555688999
Q ss_pred EEEEec
Q 044090 266 LIVIPN 271 (279)
Q Consensus 266 vIv~DN 271 (279)
+|++-.
T Consensus 81 vl~iG~ 86 (137)
T PF00205_consen 81 VLAIGT 86 (137)
T ss_dssp EEEESS
T ss_pred EEEECC
Confidence 999874
No 275
>PLN02253 xanthoxin dehydrogenase
Probab=59.43 E-value=1.1e+02 Score=27.30 Aligned_cols=89 Identities=16% Similarity=0.172 Sum_probs=51.4
Q ss_pred CCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC--CCCCCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 111 NNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS--PVIPENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 111 ~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s--~v~a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
...+.++.|.|. |+.|..++.+|.+. +.+.++++-+.+.+... ......++. +--+. .++ +.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~---G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~d~----~~ 80 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKH---GAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDV-------TVE----DD 80 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeec-------CCH----HH
Confidence 355678999986 56789999999885 56777776554433221 000011111 11111 122 23
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
.++..+.+.+.+...|.++-.+|..+.
T Consensus 81 ~~~~~~~~~~~~g~id~li~~Ag~~~~ 107 (280)
T PLN02253 81 VSRAVDFTVDKFGTLDIMVNNAGLTGP 107 (280)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcCCC
Confidence 444555666667789999988887543
No 276
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=59.31 E-value=16 Score=34.02 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=29.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
.||.|||+|-.|..++..|.+.+ .+.+++|-+.+.++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G---~~V~v~d~~~~~~~ 38 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQG---HQLQVFDVNPQAVD 38 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCC---CeEEEEcCCHHHHH
Confidence 38999999999999999998864 46667777655544
No 277
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=59.21 E-value=28 Score=33.81 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=28.7
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
.+++|.|||. |-.|..++.-|.++..+..+...+-++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~ 40 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE 40 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc
Confidence 5789999999 677777888777766777887777555
No 278
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=59.18 E-value=36 Score=34.26 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=45.1
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
.+....+++|||.|-.|.-++..|.+++. .+...+|=..+ ++.++|++
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~--~~i~IaNRT~e------------------------------rA~~La~~ 221 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGV--KKITIANRTLE------------------------------RAEELAKK 221 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCC--CEEEEEcCCHH------------------------------HHHHHHHH
Confidence 33567889999999999999999988654 23334454322 22222222
Q ss_pred ------HHHHHHHHhcCCCEEEE
Q 044090 190 ------SKVAIEEAISGADMIFV 206 (279)
Q Consensus 190 ------~~e~I~~~Le~~D~vfI 206 (279)
.++++...+..+|.||.
T Consensus 222 ~~~~~~~l~el~~~l~~~DvVis 244 (414)
T COG0373 222 LGAEAVALEELLEALAEADVVIS 244 (414)
T ss_pred hCCeeecHHHHHHhhhhCCEEEE
Confidence 35788999999999987
No 279
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=59.17 E-value=1e+02 Score=25.43 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=23.8
Q ss_pred HHHHHHH--hcCCCEEEEEeecCCCcccCHHHHHH---HHHHHcCCcEEEEE
Q 044090 191 KVAIEEA--ISGADMIFVTAGMGGGTGTGAAPVIA---GIAKSMGILTVGIA 237 (279)
Q Consensus 191 ~e~I~~~--Le~~D~vfIvAGLGGGTGSG~aPvIa---eiake~gi~tvaIv 237 (279)
.+++.+. +..=|.++++. .||-.|.++ +.+|+.|+.|++|.
T Consensus 92 ~~~~~~~~~~~~gDvli~iS------~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 92 ARQLLALYDIRPGDVLIVIS------NSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp HHHHHHHTT--TT-EEEEEE------SSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEEC------CCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3445555 66778887763 344445554 56788999999984
No 280
>PRK03868 glucose-6-phosphate isomerase; Provisional
Probab=59.13 E-value=80 Score=31.47 Aligned_cols=41 Identities=29% Similarity=0.522 Sum_probs=26.8
Q ss_pred ceEEEEeeCc--chHHHHHHHHHcCC-CcceE-EEEeCcHHHHhc
Q 044090 115 AKIKVIGVGG--GGSNAVNRMIESSM-TGVEF-WIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGg--aG~NIVd~l~~~~~-~~ve~-iavNTD~~~L~~ 155 (279)
-.|.+||||| .|..++.++++... ...++ +.-|+|...+..
T Consensus 59 ~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~ 103 (410)
T PRK03868 59 KNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINK 103 (410)
T ss_pred CEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHH
Confidence 4799999998 67777777654311 12344 356889877665
No 281
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=59.05 E-value=57 Score=28.49 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=46.9
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA 193 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~ 193 (279)
++|+|.|- |..|..++.+|.++ +.+..++.-+...+.... ..-.+.++.- ...+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~---~~~v~~~~r~~~~~~~~~--~~v~~~~~d~-------------------~~~~~ 56 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR---GHEVRAAVRNPEAAAALA--GGVEVVLGDL-------------------RDPKS 56 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC---CCEEEEEEeCHHHHHhhc--CCcEEEEecc-------------------CCHhH
Confidence 57888874 88899999999986 667666666666554432 1222332211 23455
Q ss_pred HHHHhcCCCEEEEEeecCC
Q 044090 194 IEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 194 I~~~Le~~D~vfIvAGLGG 212 (279)
+...+++.|.++++.++-.
T Consensus 57 l~~a~~G~~~~~~i~~~~~ 75 (275)
T COG0702 57 LVAGAKGVDGVLLISGLLD 75 (275)
T ss_pred HHHHhccccEEEEEecccc
Confidence 6677788887777766554
No 282
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=59.02 E-value=18 Score=33.25 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=30.7
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
.||.|||.|-.|..++-.+.+. +.+.+.+|-|.+.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~---g~~V~~~d~~~~~~~ 40 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA---GYDVVMVDISDAAVD 40 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC---CCceEEEeCCHHHHH
Confidence 4799999999999999999876 457778888777663
No 283
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=59.02 E-value=55 Score=28.14 Aligned_cols=86 Identities=16% Similarity=0.245 Sum_probs=50.1
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
...++.|.|. |+.|..++.+|.+++ ...+....+.+.++........++. +.-+.+ + .+..++.
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~----~~~~~~~ 70 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQG---AIVGLHGTRVEKLEALAAELGERVKIFPANLS-------D----RDEVKAL 70 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC---CEEEEEcCCHHHHHHHHHHhCCceEEEEccCC-------C----HHHHHHH
Confidence 3568999985 778999999998864 4555555555554431100011111 111111 1 2344555
Q ss_pred HHHHHHHhcCCCEEEEEeecCC
Q 044090 191 KVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.+++.+.+...|.+|-.+|.+.
T Consensus 71 ~~~~~~~~~~id~vi~~ag~~~ 92 (245)
T PRK12936 71 GQKAEADLEGVDILVNNAGITK 92 (245)
T ss_pred HHHHHHHcCCCCEEEECCCCCC
Confidence 6667777778999888887643
No 284
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=58.76 E-value=60 Score=28.92 Aligned_cols=30 Identities=20% Similarity=0.341 Sum_probs=23.9
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
||.|+|. |..|..++.+|.+. +.+.++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~---g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE---GRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc---CCEEEEeCC
Confidence 6899996 99999999999885 456666653
No 285
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=58.75 E-value=49 Score=29.00 Aligned_cols=85 Identities=15% Similarity=0.229 Sum_probs=49.5
Q ss_pred ceEEEEeeC-cchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC---CCCeE-EcCcccccCCCCCCCchhhHHHH
Q 044090 115 AKIKVIGVG-GGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI---PENRL-QIGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 115 ~kI~VIGIG-gaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~---a~~ri-~iG~~~t~G~GaG~np~~G~eaa 187 (279)
.++.|.|.+ +.|..++.+|.+. +.+.+.++.+...++... +. ...++ .+--+. .++ +..
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~---g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~i 68 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEE---GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADA-------TSE----QSV 68 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccC-------CCH----HHH
Confidence 468888874 5699999999885 567788887655443311 00 00112 111111 122 233
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
+...+++.+.+...|.++..+|.+..
T Consensus 69 ~~~~~~~~~~~~~id~vv~~ag~~~~ 94 (259)
T PRK12384 69 LALSRGVDEIFGRVDLLVYNAGIAKA 94 (259)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCC
Confidence 34455666667788999888876543
No 286
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=58.49 E-value=74 Score=30.87 Aligned_cols=38 Identities=13% Similarity=0.369 Sum_probs=25.3
Q ss_pred CCCCceEEEEeeCcc-hHHHHHHHHHcCCCcceEEEEeC
Q 044090 111 NNNEAKIKVIGVGGG-GSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 111 ~~~~~kI~VIGIGga-G~NIVd~l~~~~~~~ve~iavNT 148 (279)
+.+++||.|||.-|. |..+++.|.+++.+..+..++-+
T Consensus 4 ~~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las 42 (344)
T PLN02383 4 TENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLAS 42 (344)
T ss_pred cCCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEc
Confidence 345689999998665 55577666665566666655633
No 287
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=58.42 E-value=15 Score=34.42 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=25.5
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
|||.|||+|-.|..++..|.+.+ .+.++.|.+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G---~~v~v~~~~ 32 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAG---HQLHVTTIG 32 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCC---CeEEEEeCC
Confidence 58999999999999999999864 354455554
No 288
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.09 E-value=79 Score=27.21 Aligned_cols=84 Identities=11% Similarity=0.213 Sum_probs=49.1
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeE-EcCcccccCCCCCCCchhhHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRL-QIGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri-~iG~~~t~G~GaG~np~~G~eaa 187 (279)
.+.++.|+|. |+.|..++.++.+. +...+.++.+...+.... +. ...++ .+--+. .++ +..
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~---G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~ 69 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQK---GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANV-------TDE----EDV 69 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC-------CCH----HHH
Confidence 4568999998 99999999999885 457777777765543310 00 00111 111111 112 233
Q ss_pred HHHHHHHHHHhcCCCEEEEEeec
Q 044090 188 NESKVAIEEAISGADMIFVTAGM 210 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGL 210 (279)
++..+.+.+.....|.||-.+|.
T Consensus 70 ~~~~~~~~~~~~~id~vi~~ag~ 92 (253)
T PRK08217 70 EATFAQIAEDFGQLNGLINNAGI 92 (253)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 44455555555678988877764
No 289
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=57.72 E-value=13 Score=30.38 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=53.0
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEE-EeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV 192 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e 192 (279)
|||.|+|. |..|..|+..+.++ ++++..+ ++....++....+ .-++|. + ..|. ...+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~g~d~----g~~~~~------~-----~~~~----~v~~ 59 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKVGKDV----GELAGI------G-----PLGV----PVTD 59 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTTTSBC----HHHCTS------S-----T-SS----BEBS
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccccchh----hhhhCc------C-----Cccc----ccch
Confidence 68999999 99999999999885 5677644 5655422211100 001110 0 1111 0123
Q ss_pred HHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 193 ~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
.+++.++.+|.++-+. -.-++...++++.+.+++.+. -|+=+
T Consensus 60 ~l~~~~~~~DVvIDfT------~p~~~~~~~~~~~~~g~~~Vi-GTTG~ 101 (124)
T PF01113_consen 60 DLEELLEEADVVIDFT------NPDAVYDNLEYALKHGVPLVI-GTTGF 101 (124)
T ss_dssp -HHHHTTH-SEEEEES-------HHHHHHHHHHHHHHT-EEEE-E-SSS
T ss_pred hHHHhcccCCEEEEcC------ChHHhHHHHHHHHhCCCCEEE-ECCCC
Confidence 4556666699777763 234455566777777776543 34444
No 290
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=57.62 E-value=16 Score=30.06 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHc
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~ 229 (279)
+..+.|+++++.+|+|+.+ ||||-|-.-+..+.++++
T Consensus 47 ~i~~~i~~~~~~~Dlvitt----GG~g~g~~D~t~~ai~~~ 83 (133)
T cd00758 47 SIRAALIEASREADLVLTT----GGTGVGRRDVTPEALAEL 83 (133)
T ss_pred HHHHHHHHHHhcCCEEEEC----CCCCCCCCcchHHHHHHh
Confidence 3456677777789988775 678877654454544443
No 291
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=57.61 E-value=48 Score=33.68 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=36.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~ 168 (279)
.||+|+|=|..+.+++..+.+. +++++++.+|...-......+++.+.+|+
T Consensus 3 ~kvLIan~Geia~~iiraar~l---Gi~~V~v~s~~d~~a~~~~~AD~~~~i~~ 53 (499)
T PRK08654 3 KKILIANRGEIAIRVMRACREL---GIKTVAVYSEADKNALFVKYADEAYPIGP 53 (499)
T ss_pred ceEEEECCcHHHHHHHHHHHHc---CCeEEEEeccccccccchhhCCEEEEcCC
Confidence 4899999999999999988774 77888887754321111112577777775
No 292
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=57.47 E-value=55 Score=29.71 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=25.4
Q ss_pred CceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 114 EAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 114 ~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
.++|+|.| -|..|.+++.+|.+. +.+..++..|
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~---g~~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQR---GYTVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHC---CCEEEEEEcC
Confidence 47899999 599999999999986 4455555443
No 293
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=57.28 E-value=42 Score=32.58 Aligned_cols=100 Identities=22% Similarity=0.292 Sum_probs=55.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCC--eEEc-CcccccCCCCCCCchhhH-HHH--H
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPEN--RLQI-GCELTRGLGAGGNPSVGM-NAA--N 188 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~--ri~i-G~~~t~G~GaG~np~~G~-eaa--~ 188 (279)
|||.++|.|..|+-.++.++... +.+.+.++.+....+... ++. ++.+ |.. +....++. .+. .
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~--~qglY~v~~~~~~-------~~~~~i~~v~~~~~~ 69 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALN--KRKSYQVIVVGEN-------EQVETVSNVSAINSA 69 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHh--cCCCeEEEEecCC-------CcEEEEeeEeeeCCC
Confidence 79999999999998888887653 566777887665554432 122 2222 211 11111110 111 1
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHH
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake 228 (279)
.. +++.+.+..+|+|.++. |-..=..+.+.|++.+++
T Consensus 70 ~~-~~~~~~~~~~dlvt~~v--~~~~~~s~~~~l~~~L~~ 106 (381)
T PRK02318 70 DE-EAVIEAIAEADLVTTAV--GPNILPFIAPLIAKGLKK 106 (381)
T ss_pred CH-HHHHHHhcCCCEEEeCC--CcccchhHHHHHHHHHHH
Confidence 22 66777888899665544 211112456677776543
No 294
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=57.18 E-value=68 Score=28.14 Aligned_cols=84 Identities=14% Similarity=0.237 Sum_probs=50.1
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
..++.|.|. |+.|..++.+|.++ +.+.+.++.+...+.........++. +--+. .++ +..++..
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~~ 71 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE---GARVVIADIKPARARLAALEIGPAAIAVSLDV-------TRQ----DSIDRIV 71 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHHhCCceEEEEccC-------CCH----HHHHHHH
Confidence 457899986 77799999999885 56777777777655432100011111 11111 122 2334455
Q ss_pred HHHHHHhcCCCEEEEEeecC
Q 044090 192 VAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLG 211 (279)
+++.+.+...|.++-.++..
T Consensus 72 ~~~~~~~~~id~li~~ag~~ 91 (257)
T PRK07067 72 AAAVERFGGIDILFNNAALF 91 (257)
T ss_pred HHHHHHcCCCCEEEECCCcC
Confidence 55666677899888777654
No 295
>PRK05867 short chain dehydrogenase; Provisional
Probab=57.10 E-value=85 Score=27.53 Aligned_cols=86 Identities=14% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
..+..+.|.|. |+.|..++.+|.+. +.+.+++..+.+.++... +. ...++. +--+. .++ +.
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~~----~~ 72 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEA---GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDV-------SQH----QQ 72 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccC-------CCH----HH
Confidence 34568999998 67899999999885 557777777666554321 00 011221 11111 122 23
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
.++..+++.+.+...|.++..+|..
T Consensus 73 ~~~~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 73 VTSMLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 3445556666677899988887764
No 296
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=57.06 E-value=97 Score=28.37 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=24.6
Q ss_pred ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEe
Q 044090 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVN 147 (279)
Q Consensus 115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavN 147 (279)
|||.|+| -|..|..++.+|.+. +.+.++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~---g~~V~~~~ 31 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN---GHDVVILD 31 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHC---CCeEEEEe
Confidence 6899999 599999999999985 45666664
No 297
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=56.97 E-value=20 Score=31.82 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=27.3
Q ss_pred ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
|||.||| .|..|..++..|.+.+ .+.+.++-+.+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G---~~V~v~~r~~~~~ 37 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAG---NKIIIGSRDLEKA 37 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCC---CEEEEEEcCHHHH
Confidence 6899997 8999999999998864 4545556555444
No 298
>PRK12939 short chain dehydrogenase; Provisional
Probab=56.97 E-value=98 Score=26.65 Aligned_cols=85 Identities=18% Similarity=0.198 Sum_probs=49.6
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEEc-CcccccCCCCCCCchhhHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQI-GCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~i-G~~~t~G~GaG~np~~G~eaa 187 (279)
..+++.|+|. |+.|..++..|.+. +.+.+++..+...+.... .. ...++.+ --+. .+ .+..
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~----~~~~ 71 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEA---GATVAFNDGLAAEARELAAALEAAGGRAHAIAADL-------AD----PASV 71 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC-------CC----HHHH
Confidence 4578999996 89999999999885 457777776655443210 00 0011111 0011 11 2334
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
+...+++.+.+...|.|+..+|..
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 72 QRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 445566666667899988887654
No 299
>PRK12862 malic enzyme; Reviewed
Probab=56.83 E-value=31 Score=37.23 Aligned_cols=39 Identities=10% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
+....||.|.|.|.||..|++-|...+++.-++|.+|+.
T Consensus 190 ~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 228 (763)
T PRK12862 190 DIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIK 228 (763)
T ss_pred ChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 455789999999999999999998865543367888854
No 300
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=56.76 E-value=93 Score=27.26 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=48.1
Q ss_pred CCCeEEcCcccccC-CCCCCCchhhHHHHHHHHHHHHHHhc-CCCEEEE-EeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090 160 PENRLQIGCELTRG-LGAGGNPSVGMNAANESKVAIEEAIS-GADMIFV-TAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (279)
Q Consensus 160 a~~ri~iG~~~t~G-~GaG~np~~G~eaa~e~~e~I~~~Le-~~D~vfI-vAGLGGGTGSG~aPvIaeiake~gi~tvaI 236 (279)
.-.++.|-+++..| .|+--||. +..+....|+.+++ ++|.+|| =.|=-...|.|+.+.|.+.+. .++|++..
T Consensus 55 ~G~~~~IsQ~LG~gs~gCrLD~~----~La~A~~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~-~giPVLt~ 129 (159)
T PF10649_consen 55 SGRRIRISQDLGPGSRGCRLDPG----ALAEASAALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALA-AGIPVLTA 129 (159)
T ss_pred CCCEEEEeeccCCCCcccccCHH----HHHHHHHHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHH-CCCCEEEE
Confidence 35677777776433 44444553 33444556777775 6997776 235556788999999988554 58998776
Q ss_pred E
Q 044090 237 A 237 (279)
Q Consensus 237 v 237 (279)
|
T Consensus 130 V 130 (159)
T PF10649_consen 130 V 130 (159)
T ss_pred E
Confidence 6
No 301
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=56.75 E-value=14 Score=34.48 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=30.5
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
...|||.|||.|..|+-++-+|.+.+ ..+.+++-+. .+.+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~-~~~~~ 43 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD-YEAVR 43 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC-HHHHH
Confidence 34589999999999999999998865 3566666543 44443
No 302
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=56.42 E-value=44 Score=29.86 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=24.2
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
+|.|+|. |..|..++.+|.+.+. ..+.++++.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~-~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHP-DAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCC-CCEEEEecC
Confidence 5889997 8999999999988642 256666653
No 303
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=56.38 E-value=17 Score=35.82 Aligned_cols=59 Identities=25% Similarity=0.314 Sum_probs=41.3
Q ss_pred CCCcccCHHHHHHHHHHHc------------------CCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEE
Q 044090 211 GGGTGTGAAPVIAGIAKSM------------------GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVI 269 (279)
Q Consensus 211 GGGTGSG~aPvIaeiake~------------------gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~ 269 (279)
+||||||-+..+-.++... ...++-+.|.|-..||..+.--..+--+.|+.-=|.+||-
T Consensus 179 sGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~~ph~vrL~TR~~n~Eg~gevtm~dLvkn~LRmRPDRIiVG 255 (355)
T COG4962 179 SGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLAHPHVVRLETRPPNVEGTGEVTMRDLVKNALRMRPDRIIVG 255 (355)
T ss_pred eCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccCCCceEEEeecCCCCCCcceEEHHHHHHHHhhcCccceEEE
Confidence 7999999998886665431 3666789999998898655434444445556666888774
No 304
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=56.36 E-value=75 Score=27.32 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=28.5
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
..+.++.|+|- |+.|..++..+.+. +.+.+.++-+.+.+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~---g~~V~l~~R~~~~~ 65 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLARE---GARVVLVGRDLERA 65 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEcCCHHHH
Confidence 35679999996 99999999888774 44666666555544
No 305
>PRK05875 short chain dehydrogenase; Provisional
Probab=56.31 E-value=58 Score=28.91 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=29.8
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
+...++.|.|. |+.|..++.+|.+. +.+.+++..+...+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~---G~~V~~~~r~~~~~ 44 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAA---GAAVMIVGRNPDKL 44 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC---CCeEEEEeCCHHHH
Confidence 44578999997 89999999999885 55767776665444
No 306
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=56.26 E-value=64 Score=31.44 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=29.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
.||+|||-|+.|-.++.++.+. |.++++++++...
T Consensus 3 ~~ililg~g~~~~~~~~~a~~l---G~~~v~~~~~~~~ 37 (450)
T PRK06111 3 QKVLIANRGEIAVRIIRTCQKL---GIRTVAIYSEADR 37 (450)
T ss_pred ceEEEECCcHHHHHHHHHHHHc---CCeEEEEechhhc
Confidence 5899999999999999988774 7888889876543
No 307
>PRK09186 flagellin modification protein A; Provisional
Probab=56.14 E-value=93 Score=27.05 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=27.8
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
+.++.|.|. |+.|..++..|.+. +.+.+.+..+...+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~---g~~v~~~~r~~~~~ 41 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA---GGIVIAADIDKEAL 41 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC---CCEEEEEecChHHH
Confidence 468899997 78899999999885 45666666655444
No 308
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=56.05 E-value=1.4e+02 Score=27.44 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090 200 GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271 (279)
Q Consensus 200 ~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN 271 (279)
.-|.+++ -+..|-|- ..-.+++.|++.|+.+++|...|.+ .|.+++|.+|.+..
T Consensus 187 ~~Dl~I~-iS~sG~t~--~~~~~~~~ak~~g~~ii~IT~~~~s---------------~la~~ad~~l~~~~ 240 (292)
T PRK11337 187 EGDVVLV-VSHSGRTS--DVIEAVELAKKNGAKIICITNSYHS---------------PIAKLADYVICSTA 240 (292)
T ss_pred CCCEEEE-EeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCCC---------------hhHHhCCEEEEcCC
Confidence 3355544 45655552 2444567888899999988655542 34456666666554
No 309
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=56.04 E-value=1.7e+02 Score=27.20 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=31.2
Q ss_pred CEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEec
Q 044090 202 DMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271 (279)
Q Consensus 202 D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DN 271 (279)
|.+|+ -+..|-|- -.-.+++.+|+.|+++++|...|.+ .|.+++|.++.+..
T Consensus 91 d~~i~-iS~sG~t~--~~~~~~~~ak~~g~~vI~iT~~~~s---------------~la~~ad~~l~~~~ 142 (321)
T PRK11543 91 DVMLF-ISYSGGAK--ELDLIIPRLEDKSIALLAMTGKPTS---------------PLGLAAKAVLDISV 142 (321)
T ss_pred CEEEE-EeCCCCcH--HHHHHHHHHHHcCCeEEEEECCCCC---------------hhHHhCCEEEEcCC
Confidence 45444 34444441 2333457778889999998755552 45667777776553
No 310
>PRK09242 tropinone reductase; Provisional
Probab=55.90 E-value=67 Score=28.17 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=51.0
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--C---CCCCeEE-cCcccccCCCCCCCchhhH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V---IPENRLQ-IGCELTRGLGAGGNPSVGM 184 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v---~a~~ri~-iG~~~t~G~GaG~np~~G~ 184 (279)
....++.|.|. |+-|..++.++.+. +.+.+++..+...++... + .+..++. +--++ .+ .
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~---G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl-------~~----~ 72 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGL---GADVLIVARDADALAQARDELAEEFPEREVHGLAADV-------SD----D 72 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCC-------CC----H
Confidence 34568899986 67899999999885 567777776655543310 0 0012221 11111 11 2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeec
Q 044090 185 NAANESKVAIEEAISGADMIFVTAGM 210 (279)
Q Consensus 185 eaa~e~~e~I~~~Le~~D~vfIvAGL 210 (279)
+..++..+++.+.+...|.|+..+|.
T Consensus 73 ~~~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 73 EDRRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 33455566677777889998888765
No 311
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=55.82 E-value=61 Score=32.67 Aligned_cols=96 Identities=26% Similarity=0.349 Sum_probs=56.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHH--
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKV-- 192 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e-- 192 (279)
|||.|||.|=.|.-..--|.+. |-+.+.+|-|....+... ..+.-|= +|.+ +++.++...
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~---GHeVv~vDid~~KV~~ln---~g~~PI~-----------EpgL-e~ll~~~~~~g 62 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL---GHEVVCVDIDESKVELLN---KGISPIY-----------EPGL-EELLKENLASG 62 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHh---CCCCCCc-----------CccH-HHHHHhccccC
Confidence 7999999999998877677664 468888999887766531 1222221 1111 112222211
Q ss_pred ------HHHHHhcCCCEEEEEeecCCC-cccCHHHHHHHHHHH
Q 044090 193 ------AIEEAISGADMIFVTAGMGGG-TGTGAAPVIAGIAKS 228 (279)
Q Consensus 193 ------~I~~~Le~~D~vfIvAGLGGG-TGSG~aPvIaeiake 228 (279)
..+++++++|.+||+-|.--. +|+-=...+-..+++
T Consensus 63 Rl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~ 105 (414)
T COG1004 63 RLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKD 105 (414)
T ss_pred cEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHH
Confidence 256678899999998766544 444333444333433
No 312
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=55.79 E-value=20 Score=29.97 Aligned_cols=37 Identities=30% Similarity=0.542 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHc
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~ 229 (279)
+..+.|+++++.+|+||++ ||||.|---...+.++++
T Consensus 55 ~i~~~l~~~~~~~DliItt----GG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 55 EIREILRKAVDEADVVLTT----GGTGVGPRDVTPEALEEL 91 (144)
T ss_pred HHHHHHHHHHhCCCEEEEC----CCCCCCCCccHHHHHHHh
Confidence 4455567777899999886 566666554444555443
No 313
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=55.74 E-value=1.7e+02 Score=30.34 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCCCCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEe-----CcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchh
Q 044090 109 PNNNNEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVN-----TDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSV 182 (279)
Q Consensus 109 ~~~~~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavN-----TD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~ 182 (279)
...|..+||+|.| -|..|.+++.+|++.+ .+.+.++++ .+...+........-++..+.-
T Consensus 1 ~~~~~~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl------------- 66 (668)
T PLN02260 1 MATYEPKNILITGAAGFIASHVANRLIRNY-PDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDI------------- 66 (668)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCC-------------
Q ss_pred hHHHHHHHHHHHHHHh--cCCCEEEEEeecCCCcccCH------------HHHHHHHHHHcC-CcEEEEEcc
Q 044090 183 GMNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGA------------APVIAGIAKSMG-ILTVGIATV 239 (279)
Q Consensus 183 G~eaa~e~~e~I~~~L--e~~D~vfIvAGLGGGTGSG~------------aPvIaeiake~g-i~tvaIvtl 239 (279)
.+.+.+...+ .++|.||=+|+.-....+-. +-.+++.+++.+ +..+-.+..
T Consensus 67 ------~d~~~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS 132 (668)
T PLN02260 67 ------ASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVST 132 (668)
T ss_pred ------CChHHHHHHHhhcCCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcc
No 314
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=55.67 E-value=28 Score=33.04 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=28.1
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
||.|||-|+.|..++.++.+. |+++++++.+..+
T Consensus 1 kililG~g~~~~~l~~aa~~~---G~~v~~~d~~~~~ 34 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL---GVEVIAVDRYANA 34 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCEEEEEeCCCCC
Confidence 799999999999999888774 7788888886543
No 315
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=55.58 E-value=1.3e+02 Score=28.62 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.2
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEe
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVN 147 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavN 147 (279)
.|||.|||.|-.|+-++..|.+.+ .+..|..|
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~ 38 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRS 38 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCC
Confidence 479999999999999999998765 34445433
No 316
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=55.53 E-value=56 Score=31.99 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=35.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~ 168 (279)
.||+|+|-|..|..++.++.+. |++.+++++|..........++..+.+++
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~---G~~vv~~~~~~d~~a~~~~~ad~~~~~~~ 53 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKEL---GIKTVAVHSTADRDALHVQLADEAVCIGP 53 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHc---CCeEEEEcChhhccCCCHhHCCEEEEeCC
Confidence 5899999999999999998884 67888887764432111112466666653
No 317
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=55.50 E-value=1e+02 Score=27.10 Aligned_cols=86 Identities=14% Similarity=0.140 Sum_probs=50.1
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
..+.++.|.|. |+-|..++.+|.++ +.+.+.+..+...++... +. ...++. +--+. .++ +.
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl-------~d~----~~ 75 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEA---GARVVLSARKAEELEEAAAHLEALGIDALWIAADV-------ADE----AD 75 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccC-------CCH----HH
Confidence 34578999985 88899999999885 557777776655443210 00 011221 11111 122 23
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+...+++.+.....|.|+..+|..
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~~ 100 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGAT 100 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4445556666667889988887653
No 318
>PRK05865 hypothetical protein; Provisional
Probab=55.41 E-value=77 Score=34.74 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=24.8
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
|||.|.|. |..|..++.+|.+. +.+.++++.
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~---G~~Vv~l~R 32 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQ---GHEVVGIAR 32 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC---cCEEEEEEC
Confidence 68999996 99999999999885 456666554
No 319
>PRK12320 hypothetical protein; Provisional
Probab=55.27 E-value=76 Score=33.98 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=24.0
Q ss_pred ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEe
Q 044090 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVN 147 (279)
Q Consensus 115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavN 147 (279)
|||+|.| -|..|.+++.+|++.+ .+.++++
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G---~~Vi~ld 31 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAG---HTVSGIA 31 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CEEEEEe
Confidence 6899999 6999999999999854 4555554
No 320
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=55.25 E-value=24 Score=30.35 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=32.9
Q ss_pred CCCCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 108 ~~~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
...+..+.++.|||.|..|..++.++... +.+.+++|.....
T Consensus 30 ~~~~l~g~tvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~~~~~ 71 (178)
T PF02826_consen 30 PGRELRGKTVGIIGYGRIGRAVARRLKAF---GMRVIGYDRSPKP 71 (178)
T ss_dssp TBS-STTSEEEEESTSHHHHHHHHHHHHT---T-EEEEEESSCHH
T ss_pred CccccCCCEEEEEEEcCCcCeEeeeeecC---CceeEEecccCCh
Confidence 34567788999999999999999999875 5688888875543
No 321
>PRK06500 short chain dehydrogenase; Provisional
Probab=55.18 E-value=87 Score=27.02 Aligned_cols=86 Identities=19% Similarity=0.299 Sum_probs=49.8
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhHHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
.+.++.|.|. |+-|..++.+|.++ +.+.+++..+...+......-..++ .+-.+. .++ +..+..
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~ 70 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAE---GARVAITGRDPASLEAARAELGESALVIRADA-------GDV----AAQKAL 70 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEecCCHHHHHHHHHHhCCceEEEEecC-------CCH----HHHHHH
Confidence 3568999996 88899999999985 5677777666544432100000111 111111 111 223445
Q ss_pred HHHHHHHhcCCCEEEEEeecCC
Q 044090 191 KVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.+.+.+.....|.++-.+|...
T Consensus 71 ~~~~~~~~~~id~vi~~ag~~~ 92 (249)
T PRK06500 71 AQALAEAFGRLDAVFINAGVAK 92 (249)
T ss_pred HHHHHHHhCCCCEEEECCCCCC
Confidence 5666667778999888876543
No 322
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=55.17 E-value=25 Score=36.73 Aligned_cols=105 Identities=19% Similarity=0.222 Sum_probs=60.4
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEE-----EE-eCcHHHHhc---------------------CC--CC-CC
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFW-----IV-NTDAQAMKV---------------------SP--VI-PE 161 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~i-----av-NTD~~~L~~---------------------s~--v~-a~ 161 (279)
....|.+++|.|.-||+++..|+.-+.+.+.|+ .. |-=.|+|.. .. +. .-
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG 417 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATG 417 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccccccc
Confidence 457789999999999999999998776555542 11 111222221 00 00 01
Q ss_pred CeEEcCcccccCCCCCCCchhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCCccc---CHHHHHHHHHHH
Q 044090 162 NRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGT---GAAPVIAGIAKS 228 (279)
Q Consensus 162 ~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGS---G~aPvIaeiake 228 (279)
.++.|... |+-. .+.+.+..+++.++++++++.-|.||+. |-| =..|.++..+++
T Consensus 418 ~~lsIPMp---GH~I---~e~~~e~~~~D~~~Le~LI~~HDviFLL------tDsRESRWLPtll~a~~~ 475 (669)
T KOG2337|consen 418 YVLSIPMP---GHPI---GESLLEQTKKDLKRLEQLIKDHDVIFLL------TDSRESRWLPTLLAAAKN 475 (669)
T ss_pred eEEeccCC---CCcc---chhhHHHHHHHHHHHHHHHhhcceEEEE------eccchhhhhHHHHHhhhc
Confidence 12222211 1100 1123456677889999999999988886 334 345666555544
No 323
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=55.00 E-value=1.7e+02 Score=26.89 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.8
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCC
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSM 138 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~ 138 (279)
|||.|||. |.+|+.|+++..+++.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH 25 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH 25 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC
Confidence 79999996 8899999999988653
No 324
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=54.82 E-value=13 Score=38.10 Aligned_cols=63 Identities=29% Similarity=0.567 Sum_probs=40.2
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEe-CcHHHHhcCCC-CCCCeEEcCcccccCCCCCCCc
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVN-TDAQAMKVSPV-IPENRLQIGCELTRGLGAGGNP 180 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavN-TD~~~L~~s~v-~a~~ri~iG~~~t~G~GaG~np 180 (279)
..||.|||.|-||...+.+|++.+..++. ++- +|...=+-..+ .+++.|.+|..-.. |..+||
T Consensus 21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~--IlEa~dRIGGRI~ti~~~d~~ielGAqwih--G~~gNp 85 (498)
T KOG0685|consen 21 NAKIVIIGAGIAGLAAATRLLENGFIDVL--ILEASDRIGGRIHTIPFADGVIELGAQWIH--GEEGNP 85 (498)
T ss_pred CceEEEECCchHHHHHHHHHHHhCCceEE--EEEeccccCceEeeEEcCCCeEeecceeec--CCCCCh
Confidence 34999999999999999999977544333 332 23222111112 25778888887554 445565
No 325
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=54.67 E-value=68 Score=24.72 Aligned_cols=62 Identities=13% Similarity=0.203 Sum_probs=41.6
Q ss_pred CCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCc-hhHHHHHHHHHHHHHHHhC-CEEEEEech
Q 044090 211 GGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFE-GRRRAIQAQEGVANLRNNV-DTLIVIPND 272 (279)
Q Consensus 211 GGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~E-g~~r~~NA~~gL~~L~e~a-D~vIv~DNd 272 (279)
=|-.|+|=+-++-.+++.++...+-+-..-...+ ...........+++..+.. ..+++|||=
T Consensus 4 ~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred ECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 3778999888888889999877766643322211 1123335556667777776 899999983
No 326
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.62 E-value=18 Score=35.27 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=26.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
.+|.|||+|+.|..++..|.+.+ .+.+..|.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G---~~V~g~D~~~~ 37 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKG---VYVIGVDKSLE 37 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCC---CEEEEEeCCcc
Confidence 58999999999999888887754 45666665433
No 327
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=54.56 E-value=19 Score=34.33 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=28.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
+||.+||+|..|..|+.+|.+. +.+..+.|=+.+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a---G~~v~v~~r~~~k 35 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA---GHEVTVYNRTPEK 35 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC---CCEEEEEeCChhh
Confidence 5899999999999999999995 4566666665444
No 328
>PRK08263 short chain dehydrogenase; Provisional
Probab=54.44 E-value=94 Score=27.74 Aligned_cols=84 Identities=18% Similarity=0.188 Sum_probs=48.9
Q ss_pred CceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 114 EAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 114 ~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
...+.|.| -|+-|..++.+|.++ +.+.+++.-+.+.+.........++ .+--+. .++ +..++..
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~---g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~~ 68 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALER---GDRVVATARDTATLADLAEKYGDRLLPLALDV-------TDR----AAVFAAV 68 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhccCCeeEEEccC-------CCH----HHHHHHH
Confidence 34688888 477899999999885 4566666666555543110001111 111111 122 2334455
Q ss_pred HHHHHHhcCCCEEEEEeecC
Q 044090 192 VAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLG 211 (279)
+.+.+.+...|.++.++|..
T Consensus 69 ~~~~~~~~~~d~vi~~ag~~ 88 (275)
T PRK08263 69 ETAVEHFGRLDIVVNNAGYG 88 (275)
T ss_pred HHHHHHcCCCCEEEECCCCc
Confidence 66666778899988888765
No 329
>PRK05717 oxidoreductase; Validated
Probab=54.38 E-value=1.1e+02 Score=26.85 Aligned_cols=85 Identities=12% Similarity=0.129 Sum_probs=47.4
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
+.++.|.|. |+.|..++.+|.+. +.+.+.++.+...+.........++ .+--+. .++ +..++..
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~~~~~~ 75 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAE---GWQVVLADLDRERGSKVAKALGENAWFIAMDV-------ADE----AQVAAGV 75 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHc---CCEEEEEcCCHHHHHHHHHHcCCceEEEEccC-------CCH----HHHHHHH
Confidence 457999996 78899999999885 4576767654433222100001121 111111 112 2233344
Q ss_pred HHHHHHhcCCCEEEEEeecCC
Q 044090 192 VAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 192 e~I~~~Le~~D~vfIvAGLGG 212 (279)
+++.+.....|.+|-.+|...
T Consensus 76 ~~~~~~~g~id~li~~ag~~~ 96 (255)
T PRK05717 76 AEVLGQFGRLDALVCNAAIAD 96 (255)
T ss_pred HHHHHHhCCCCEEEECCCccc
Confidence 555555667898888887654
No 330
>PRK07024 short chain dehydrogenase; Provisional
Probab=54.35 E-value=82 Score=27.75 Aligned_cols=85 Identities=16% Similarity=0.271 Sum_probs=50.2
Q ss_pred ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC--CCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHH
Q 044090 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS--PVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s--~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
+++.|.| -|+.|..++.+|.+. +.+.++++.+.+.+... ......++. +.-+. .++ +..++.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~i~~~ 68 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQ---GATLGLVARRTDALQAFAARLPKAARVSVYAADV-------RDA----DALAAA 68 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCC-------CCH----HHHHHH
Confidence 4788888 578899999999875 56777777766655431 111011221 11111 122 334455
Q ss_pred HHHHHHHhcCCCEEEEEeecCCC
Q 044090 191 KVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
.+++.+.....|.++..+|...+
T Consensus 69 ~~~~~~~~g~id~lv~~ag~~~~ 91 (257)
T PRK07024 69 AADFIAAHGLPDVVIANAGISVG 91 (257)
T ss_pred HHHHHHhCCCCCEEEECCCcCCC
Confidence 55666666678988888876543
No 331
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=54.32 E-value=20 Score=36.39 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
+..+||.|+|+|.-|..+++.|.+. ++++.+.|++...
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~---G~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKL---GAEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHC---CCeEEEEcCCCCc
Confidence 4488999999999999999999985 5788888875444
No 332
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=54.16 E-value=26 Score=37.75 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=31.8
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
.+....||.+.|.|.||..|++-|...+++.-++|.+|+.
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 220 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK 220 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 3456789999999999999999998865543367888863
No 333
>PRK08265 short chain dehydrogenase; Provisional
Probab=53.91 E-value=76 Score=28.16 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=50.5
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhHHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
..+.++.|.|. |+-|..++.+|.+. +.+.++++-+.+.+.........++ .+--+. .+ .+..++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl-------~~----~~~~~~ 69 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAA---GARVAIVDIDADNGAAVAASLGERARFIATDI-------TD----DAAIER 69 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhCCeeEEEEecC-------CC----HHHHHH
Confidence 34568999997 77899999999885 5577777666554432110001122 111111 11 233444
Q ss_pred HHHHHHHHhcCCCEEEEEeecC
Q 044090 190 SKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLG 211 (279)
..+++.+.+...|.++..+|..
T Consensus 70 ~~~~~~~~~g~id~lv~~ag~~ 91 (261)
T PRK08265 70 AVATVVARFGRVDILVNLACTY 91 (261)
T ss_pred HHHHHHHHhCCCCEEEECCCCC
Confidence 5566666777889888877653
No 334
>PLN02214 cinnamoyl-CoA reductase
Probab=53.76 E-value=76 Score=29.84 Aligned_cols=31 Identities=19% Similarity=0.077 Sum_probs=24.3
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEE
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIV 146 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iav 146 (279)
..++|.|.|. |..|..++++|.+++ .+..++
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G---~~V~~~ 40 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERG---YTVKGT 40 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCc---CEEEEE
Confidence 3568999998 899999999999864 454444
No 335
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=53.73 E-value=22 Score=35.98 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=29.5
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
.+|.|||+|-.|.+++..|.++ +.+..+.|-+.+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~---G~~V~v~dr~~~~~ 37 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR---GFKISVYNRTYEKT 37 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC---CCeEEEEeCCHHHH
Confidence 5899999999999999999985 45666777776654
No 336
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=53.70 E-value=1.8e+02 Score=28.55 Aligned_cols=126 Identities=19% Similarity=0.208 Sum_probs=75.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI 194 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I 194 (279)
..+.|+||||.|+-.++-|.+.+. -+.+.+|-|.-.|.+. ||+.+-+... |+. --+||..-+..|
T Consensus 83 ~aVAiVGvGGVGSV~AeMLTRCGI--GkLlLfDYDkVElANM-----NRLFf~P~Qa-Gls-------Kv~AA~~TL~~i 147 (422)
T KOG2336|consen 83 FAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKVELANM-----NRLFFQPDQA-GLS-------KVDAAVQTLAEI 147 (422)
T ss_pred heeEEEecCchhHHHHHHHHhcCc--ceEEEeecchhhhhcc-----cccccCcccc-cch-------HHHHHHHHHHhc
Confidence 358999999999999988887653 3567789998888763 7888765421 100 012233222222
Q ss_pred HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHH---cCCcEEEEEccCCCCchhHHHHHHHHHHHHHH
Q 044090 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS---MGILTVGIATVPFCFEGRRRAIQAQEGVANLR 260 (279)
Q Consensus 195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake---~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~ 260 (279)
+.|.+|=++.+.=-|=-++-..+-++.+- -|.++==++..--.||-+-....|..-+++.+
T Consensus 148 -----NPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~W 211 (422)
T KOG2336|consen 148 -----NPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTW 211 (422)
T ss_pred -----CCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHH
Confidence 77888888887766655665555444432 24443334444556776654444544444433
No 337
>PRK11544 hycI hydrogenase 3 maturation protease; Provisional
Probab=53.68 E-value=22 Score=30.46 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=29.5
Q ss_pred ceEEEEeeC-------cchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 115 AKIKVIGVG-------GGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 115 ~kI~VIGIG-------gaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
||++|+|+| |.|-.++++|.+...++++++-..|....+
T Consensus 1 ~~~lVlGiGN~L~gDDGvG~~v~~~L~~~~~~~v~vid~gt~~~~~ 46 (156)
T PRK11544 1 MTDVVLTVGNSMMGDDGAGPLLAEKLAAAPKGGWVVIDGGSAPEND 46 (156)
T ss_pred CcEEEEEeCccccccCcHHHHHHHHHhccCCCCeEEEECCCCHHHH
Confidence 578999999 689999999977666667766666654433
No 338
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=53.64 E-value=2.4e+02 Score=29.69 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=30.9
Q ss_pred HHHHHHHHHhc--CCCEEEEEeecCCCccc-CHHHHHHHHHHHcC--CcEEEEEccCCC
Q 044090 189 ESKVAIEEAIS--GADMIFVTAGMGGGTGT-GAAPVIAGIAKSMG--ILTVGIATVPFC 242 (279)
Q Consensus 189 e~~e~I~~~Le--~~D~vfIvAGLGGGTGS-G~aPvIaeiake~g--i~tvaIvtlPf~ 242 (279)
+..+++.+.++ +-|.++++ ||-|| -.+-.|++.+++.+ +.+|+| |..
T Consensus 177 e~~~~~~~~l~~l~Id~LViI----GGddS~~~A~~Lae~~~~~g~~i~VIGV---PKT 228 (568)
T PLN02251 177 EQFKQAEETATKLDLDGLVVI----GGDDSNTNACLLAEYFRAKNLKTRVIGC---PKT 228 (568)
T ss_pred HHHHHHHHHHHHcCCCEEEEe----CCchHHHHHHHHHHHHHhcCCCeeEEEe---Cce
Confidence 44555555554 77888886 55566 35667888887766 666666 664
No 339
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=53.51 E-value=1e+02 Score=30.16 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=28.2
Q ss_pred HHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHh
Q 044090 224 GIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNN 262 (279)
Q Consensus 224 eiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~ 262 (279)
+.++++|+....+..++..+..+.+..|+...|..|.+.
T Consensus 93 ~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~ 131 (372)
T PRK05429 93 ELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLEL 131 (372)
T ss_pred HHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHC
Confidence 556678999888776676665555556888888888754
No 340
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=53.50 E-value=20 Score=36.61 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
.+..+|.+||+|-.|.+++..|.++ +.+..+.|-+.+..
T Consensus 4 ~~~~~IG~IGLG~MG~~mA~nL~~~---G~~V~V~NRt~~k~ 42 (493)
T PLN02350 4 AALSRIGLAGLAVMGQNLALNIAEK---GFPISVYNRTTSKV 42 (493)
T ss_pred CCCCCEEEEeeHHHHHHHHHHHHhC---CCeEEEECCCHHHH
Confidence 3556899999999999999999985 56777778765443
No 341
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=53.39 E-value=1.2e+02 Score=26.73 Aligned_cols=85 Identities=15% Similarity=0.261 Sum_probs=49.0
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
.+.++.|.|. |+.|..++.+|.+. +.+.++++-+.+.++...-....++. +-.+. .+ .+..++.
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~-------~~----~~~~~~~ 69 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAE---GARVAVLDKSAAGLQELEAAHGDAVVGVEGDV-------RS----LDDHKEA 69 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHhhcCCceEEEEecc-------CC----HHHHHHH
Confidence 3467888887 56799999999885 56777776655544432100011221 11111 11 1233444
Q ss_pred HHHHHHHhcCCCEEEEEeecC
Q 044090 191 KVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+++.+.+...|.++-.+|..
T Consensus 70 ~~~~~~~~g~id~li~~Ag~~ 90 (262)
T TIGR03325 70 VARCVAAFGKIDCLIPNAGIW 90 (262)
T ss_pred HHHHHHHhCCCCEEEECCCCC
Confidence 555666667889998888764
No 342
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=53.38 E-value=49 Score=31.81 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=24.4
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEe
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN 147 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavN 147 (279)
+||.|||. |..|..+++.|.++ ++++.+++=
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~ 34 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH--PEVEIVAVT 34 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC--CCceEEEEE
Confidence 79999998 77888999888754 567776653
No 343
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=53.28 E-value=18 Score=35.51 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=30.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
|||.|||.|-.|.-++. ++.. +.+.+.+|.|.+.++.
T Consensus 1 mkI~VIGlGyvGl~~A~-~lA~---G~~VigvD~d~~kv~~ 37 (388)
T PRK15057 1 MKITISGTGYVGLSNGL-LIAQ---NHEVVALDILPSRVAM 37 (388)
T ss_pred CEEEEECCCHHHHHHHH-HHHh---CCcEEEEECCHHHHHH
Confidence 68999999999999994 4443 5788899998887765
No 344
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=53.25 E-value=1.2e+02 Score=30.97 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=26.5
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
|||+|||-|+..--++.+|.+. ..+.+.+++..
T Consensus 1 mkVLviG~Ggrehal~~~l~~s-~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKS-TKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhC-CCCCEEEEEEC
Confidence 7999999999999999999765 24677777644
No 345
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=53.21 E-value=1.1e+02 Score=26.59 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=47.1
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
....++.|.|. |+-|..++.+|.+. +.+.++++.+. +... ..++. +-.+. .+ .+..++
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~---G~~v~~~~~~~--~~~~----~~~~~~~~~D~-------~~----~~~~~~ 65 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEA---GAKVIGFDQAF--LTQE----DYPFATFVLDV-------SD----AAAVAQ 65 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEecch--hhhc----CCceEEEEecC-------CC----HHHHHH
Confidence 34568999987 57899999999885 56777776554 2211 11221 11111 11 233444
Q ss_pred HHHHHHHHhcCCCEEEEEeec
Q 044090 190 SKVAIEEAISGADMIFVTAGM 210 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGL 210 (279)
..+++.+.+...|.|+-.+|.
T Consensus 66 ~~~~~~~~~~~id~vi~~ag~ 86 (252)
T PRK08220 66 VCQRLLAETGPLDVLVNAAGI 86 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 556666667788988777654
No 346
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=53.05 E-value=21 Score=35.97 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=30.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
+||.|||.|-.|..|+..+... +.+..+.|-+.+.++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~---G~~V~v~D~~~~~~~ 41 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA---GIDVAVFDPHPEAER 41 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHH
Confidence 5899999999999999999875 567778888776654
No 347
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=53.03 E-value=25 Score=35.86 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=29.2
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
.+..+.+|.|||+|..|..++.++... +.+.+++|.
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~f---G~~V~~~d~ 169 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAF---GMKVLAYDP 169 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhC---CCEEEEECC
Confidence 357788999999999999999999764 456677763
No 348
>PRK05650 short chain dehydrogenase; Provisional
Probab=52.76 E-value=1e+02 Score=27.40 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=48.3
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--C-CCCCeEE-cCcccccCCCCCCCchhhHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V-IPENRLQ-IGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v-~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
+++.|.|. |+.|..++..|.+. +.+.+++.-+...++... . ....++. +.-+. .++ +..++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~~----~~~~~ 66 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWARE---GWRLALADVNEEGGEETLKLLREAGGDGFYQRCDV-------RDY----SQLTA 66 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccC-------CCH----HHHHH
Confidence 36788885 78899999999885 556666666554443210 0 0011221 21111 122 22344
Q ss_pred HHHHHHHHhcCCCEEEEEeecCC
Q 044090 190 SKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
..+.+.+.+...|.+|..+|...
T Consensus 67 ~~~~i~~~~~~id~lI~~ag~~~ 89 (270)
T PRK05650 67 LAQACEEKWGGIDVIVNNAGVAS 89 (270)
T ss_pred HHHHHHHHcCCCCEEEECCCCCC
Confidence 55666777778998888877543
No 349
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=52.71 E-value=30 Score=30.47 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
..+.++.|+|.|..|..++.+|.. .++...+.++|+...-
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~---~Ga~V~V~e~DPi~al 60 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRG---LGARVTVTEIDPIRAL 60 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHH---TT-EEEEE-SSHHHHH
T ss_pred eCCCEEEEeCCCcccHHHHHHHhh---CCCEEEEEECChHHHH
Confidence 457789999999999999999987 4678888999876543
No 350
>PTZ00188 adrenodoxin reductase; Provisional
Probab=52.66 E-value=62 Score=33.42 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCceEEEEeeCcchHHHHHHHHHc
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIES 136 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~ 136 (279)
...||.|||-|-||...+.++.++
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~ 61 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH 61 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh
Confidence 467999999999999999988764
No 351
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=52.53 E-value=1.2e+02 Score=26.74 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=50.9
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHH
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESK 191 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~ 191 (279)
...+|.|||.|..|..++..+.. ...+++.++ +|.|.+.... .+ + | .|. . ..
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~-~~~g~~ivgv~D~d~~~~~~-------~i--~-----g-----~~v-~------~~ 135 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGF-EKRGFKIVAAFDVDPEKIGT-------KI--G-----G-----IPV-Y------HI 135 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhc-ccCCcEEEEEEECChhhcCC-------Ee--C-----C-----eEE-c------CH
Confidence 35689999999999999986532 335677765 5766443211 11 0 0 010 0 12
Q ss_pred HHHHHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCc
Q 044090 192 VAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGIL 232 (279)
Q Consensus 192 e~I~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~ 232 (279)
+.+.+.+ .++|.++|+... .....+.+.+.+.|+.
T Consensus 136 ~~l~~li~~~~iD~ViIa~P~------~~~~~i~~~l~~~Gi~ 172 (213)
T PRK05472 136 DELEEVVKENDIEIGILTVPA------EAAQEVADRLVEAGIK 172 (213)
T ss_pred HHHHHHHHHCCCCEEEEeCCc------hhHHHHHHHHHHcCCC
Confidence 2344444 368999997543 3445666777777753
No 352
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=52.44 E-value=24 Score=26.69 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=27.3
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
..+.++.|+|.|..|..++..+.+.+ ..+.+..|.
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~--~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEG--GKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC--CCEEEEEcC
Confidence 55679999999999999999998864 334455555
No 353
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=52.31 E-value=29 Score=32.74 Aligned_cols=41 Identities=12% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
+..+.|+.|||.|.+|.-++..+... +++.+++|.+.+.+.
T Consensus 149 ~l~g~kvlViG~G~iG~~~a~~L~~~---Ga~V~v~~r~~~~~~ 189 (296)
T PRK08306 149 TIHGSNVLVLGFGRTGMTLARTLKAL---GANVTVGARKSAHLA 189 (296)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC---CCEEEEEECCHHHHH
Confidence 44578999999999999999998774 567788888766543
No 354
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=52.30 E-value=69 Score=30.84 Aligned_cols=88 Identities=17% Similarity=0.319 Sum_probs=50.2
Q ss_pred eEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090 116 KIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI 194 (279)
Q Consensus 116 kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I 194 (279)
||.||| -|..|..+++.|.+++.+.++...+-++... ...+.+. | .+..... .+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~--------g~~~~~~-------~--~~~~~~~------~~-- 55 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSA--------GRKVTFK-------G--KELEVNE------AK-- 55 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccC--------CCeeeeC-------C--eeEEEEe------CC--
Confidence 578999 6778888999887766666665555444221 1122111 0 0111000 01
Q ss_pred HHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEE
Q 044090 195 EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (279)
Q Consensus 195 ~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tv 234 (279)
...+.++|.+|++ ||++.+-.++..+.+.|..+|
T Consensus 56 ~~~~~~~D~v~~a------~g~~~s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 56 IESFEGIDIALFS------AGGSVSKEFAPKAAKCGAIVI 89 (339)
T ss_pred hHHhcCCCEEEEC------CCHHHHHHHHHHHHHCCCEEE
Confidence 1234789999884 577777777766656676544
No 355
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=52.28 E-value=1.1e+02 Score=27.10 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=50.6
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
..+.++.|.|. |+.|..++.+|.+. +.+.+.++.+.+.+.... .. ...++. +-.+. .+ .+.
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~---G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~----~~~ 73 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKA---GATIVFNDINQELVDKGLAAYRELGIEAHGYVCDV-------TD----EDG 73 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCC-------CC----HHH
Confidence 34557888887 56788899999885 567777777665553310 00 011111 11111 11 223
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
++...+++.+.+...|.++..+|..+
T Consensus 74 ~~~~~~~~~~~~~~id~li~~ag~~~ 99 (265)
T PRK07097 74 VQAMVSQIEKEVGVIDILVNNAGIIK 99 (265)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCC
Confidence 44455566666677899998888754
No 356
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=52.26 E-value=21 Score=36.33 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=32.4
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.||.|||.|-.|..|+..+.+. +.+.+.+|.+.+.++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a---G~~V~l~d~~~e~l~~ 43 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA---GHQVLLYDIRAEALAR 43 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHH
Confidence 4799999999999999998874 6788888998888764
No 357
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.20 E-value=24 Score=34.01 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=31.2
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
.||.|||.|-.|..|+-.+... |.+..++|.+.+.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~ 44 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEA 44 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHH
Confidence 4799999999999999988774 678888998877654
No 358
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=52.19 E-value=26 Score=34.85 Aligned_cols=41 Identities=17% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s 156 (279)
...|||.|||+|-.|.-++-.+.+ +.+.+.+|.|.+..+..
T Consensus 4 ~~~mkI~vIGlGyvGlpmA~~la~----~~~V~g~D~~~~~ve~l 44 (425)
T PRK15182 4 IDEVKIAIIGLGYVGLPLAVEFGK----SRQVVGFDVNKKRILEL 44 (425)
T ss_pred CCCCeEEEECcCcchHHHHHHHhc----CCEEEEEeCCHHHHHHH
Confidence 445999999999999999988654 37888899988776653
No 359
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=52.18 E-value=57 Score=33.07 Aligned_cols=77 Identities=21% Similarity=0.262 Sum_probs=48.1
Q ss_pred HHHHHHHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccC------------------CC-------
Q 044090 190 SKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVP------------------FC------- 242 (279)
Q Consensus 190 ~~e~I~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlP------------------f~------- 242 (279)
.-++|-+.| ++.|+++++..=|=-|=+| ..+++.+.+.|++++-|.+++ +.
T Consensus 324 ~g~eIa~~Lk~dgVDAvILtstCgtCtrcg--a~m~keiE~~GIPvV~i~~~~pI~~~vGanRiv~~~~i~~PlGnp~l~ 401 (431)
T TIGR01917 324 FAKEFSKELLAAGVDAVILTSTUGTCTRCG--ATMVKEIERAGIPVVHICTVTPIALTVGANRIIPAIAIPHPLGDPALD 401 (431)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCCcchhHH--HHHHHHHHHcCCCEEEEeechhHHHhcCCCceecCCCCCCCCCCCCCC
Confidence 333454444 6999999986654444444 447788888888887765432 21
Q ss_pred --CchhHHHHHHHHHHHHHHHhCCEEEE
Q 044090 243 --FEGRRRAIQAQEGVANLRNNVDTLIV 268 (279)
Q Consensus 243 --~Eg~~r~~NA~~gL~~L~e~aD~vIv 268 (279)
.|-..|......+|+.|..-.+.-.+
T Consensus 402 ~~~e~~~rr~~v~~AL~aL~t~~~~qt~ 429 (431)
T TIGR01917 402 AAEEKALRRKIVEKALKALETEIEDQTV 429 (431)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 12234666777888888766554433
No 360
>PRK12861 malic enzyme; Reviewed
Probab=52.16 E-value=30 Score=37.42 Aligned_cols=39 Identities=13% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
+....||.+.|.|-||..|++-|...+++.-++|.+|+.
T Consensus 186 ~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~ 224 (764)
T PRK12861 186 SIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIE 224 (764)
T ss_pred ChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCC
Confidence 455789999999999999999998866543378888854
No 361
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=52.13 E-value=75 Score=31.53 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=26.8
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
.|||.|.|. |-.|.+++.+|.+. +.+.++++.
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~---G~~V~~ldr 152 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGR---GDEVIVIDN 152 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHC---CCEEEEEeC
Confidence 469999996 88999999999985 567777764
No 362
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=52.07 E-value=1.4e+02 Score=29.02 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=26.1
Q ss_pred HHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHh
Q 044090 224 GIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNN 262 (279)
Q Consensus 224 eiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~ 262 (279)
+.+.++|+.+..++.+-..+..+.+..|+...|..|.+.
T Consensus 85 ~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~~ 123 (363)
T TIGR01027 85 QLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLEL 123 (363)
T ss_pred HHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHhC
Confidence 345667888765554444455555677898999988874
No 363
>PRK12828 short chain dehydrogenase; Provisional
Probab=52.02 E-value=90 Score=26.53 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=47.9
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC--CCCCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS--PVIPENRLQIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s--~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
.+.+++|.|- |+-|..++..|.++ +.+.++++.+.+.+... ...+.....+..+. .|+ +..++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~ 71 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAAR---GARVALIGRGAAPLSQTLPGVPADALRIGGIDL-------VDP----QAARR 71 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHC---CCeEEEEeCChHhHHHHHHHHhhcCceEEEeec-------CCH----HHHHH
Confidence 3568999986 88899999999875 56777776654432211 00001101111111 112 23344
Q ss_pred HHHHHHHHhcCCCEEEEEeecC
Q 044090 190 SKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLG 211 (279)
..+++.+....+|.|+-.++..
T Consensus 72 ~~~~~~~~~~~~d~vi~~ag~~ 93 (239)
T PRK12828 72 AVDEVNRQFGRLDALVNIAGAF 93 (239)
T ss_pred HHHHHHHHhCCcCEEEECCccc
Confidence 5556666667889888776643
No 364
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=51.89 E-value=78 Score=28.68 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=26.8
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeC
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNT 148 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNT 148 (279)
..+-.+.+||+|--|-+++=.|++.-.-+.+-+. +|.
T Consensus 16 ~PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dg 53 (217)
T COG4015 16 KPRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDG 53 (217)
T ss_pred CCCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecC
Confidence 3455789999999999998888776544566443 443
No 365
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=51.81 E-value=20 Score=36.47 Aligned_cols=38 Identities=24% Similarity=0.363 Sum_probs=33.0
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.+|.|||.|-.|..|+..+... +.+.+.+|.+.+.++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a---G~~V~l~D~~~e~l~~ 45 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA---GHTVLLYDARAGAAAA 45 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHH
Confidence 4799999999999999998874 6788899999888765
No 366
>PRK07806 short chain dehydrogenase; Provisional
Probab=51.59 E-value=1.6e+02 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEE
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIV 146 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iav 146 (279)
...++.|.|. |+.|..++.+|.++ +.+.+++
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~---G~~V~~~ 36 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGA---GAHVVVN 36 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHC---CCEEEEE
Confidence 3468999997 89999999999885 4555554
No 367
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=51.40 E-value=21 Score=30.49 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=28.9
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC--cHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT--DAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT--D~~~L~ 154 (279)
+||.|+|.|..|..+++.+.+. ++++..+++. |.+.+.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a 40 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLER--PDIEVVAINDLTDPETLA 40 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHH
Confidence 5899999999999998887754 5788888763 544443
No 368
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=51.09 E-value=52 Score=31.31 Aligned_cols=47 Identities=30% Similarity=0.354 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090 186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (279)
Q Consensus 186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI 236 (279)
+..+-.+.++++.+.+|+++|+ ||.-|.-+-.|++++++.+.+++-|
T Consensus 195 aT~~RQ~a~~~La~~vD~miVI----Gg~~SsNT~kL~eia~~~~~~t~~I 241 (281)
T PF02401_consen 195 ATQNRQEAARELAKEVDAMIVI----GGKNSSNTRKLAEIAKEHGKPTYHI 241 (281)
T ss_dssp HHHHHHHHHHHHHCCSSEEEEE----S-TT-HHHHHHHHHHHHCTTCEEEE
T ss_pred hHHHHHHHHHHHHhhCCEEEEe----cCCCCccHHHHHHHHHHhCCCEEEe
Confidence 3344567778888999988887 4556888999999999988777766
No 369
>PRK05993 short chain dehydrogenase; Provisional
Probab=50.85 E-value=94 Score=27.92 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=29.5
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
.++.|.|. |+.|..++.+|.+. +.+.+++.-+.+.+..
T Consensus 5 k~vlItGasggiG~~la~~l~~~---G~~Vi~~~r~~~~~~~ 43 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSD---GWRVFATCRKEEDVAA 43 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEECCHHHHHH
Confidence 47899998 88999999999874 5677777776665543
No 370
>PLN00198 anthocyanidin reductase; Provisional
Probab=50.65 E-value=72 Score=29.51 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=26.3
Q ss_pred CCCCceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 111 NNNEAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 111 ~~~~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
++.+++|.|.| -|..|..++.+|.+. +.+.+++..
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~---g~~V~~~~r 41 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQK---GYAVNTTVR 41 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHC---CCEEEEEEC
Confidence 34577899999 778999999999985 445554433
No 371
>PLN02712 arogenate dehydrogenase
Probab=50.57 E-value=24 Score=37.29 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=29.3
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
...+||.|||+|..|..++..|.+. +.+.+++|.+.
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~---G~~V~~~dr~~ 402 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQ---GHTVLAYSRSD 402 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHC---cCEEEEEECCh
Confidence 4668999999999999999999875 45677777653
No 372
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=50.49 E-value=95 Score=26.75 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=49.4
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC--CCCCCCeEE-cCcccccCCCCCCCchhhHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS--PVIPENRLQ-IGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s--~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
.+.++.|+|. |+.|..++..|.+. +.+++++..+...+... .+....++. +-.+. .++ +..+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~ 69 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAE---GARVVVTDRNEEAAERVAAEILAGGRAIAVAADV-------SDE----ADVE 69 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCC-------CCH----HHHH
Confidence 4568999996 78899999999875 56777777665444321 000001111 11111 122 2233
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
...+++.+.....|.||..+|....
T Consensus 70 ~~~~~~~~~~~~~d~vi~~ag~~~~ 94 (251)
T PRK07231 70 AAVAAALERFGSVDILVNNAGTTHR 94 (251)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCC
Confidence 3444555556788998888876433
No 373
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=50.46 E-value=2.1e+02 Score=26.41 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.8
Q ss_pred ceEEEEeeCcchHHHHHHHHHc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIES 136 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~ 136 (279)
+||.|||+|..|..++..+.+.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 6999999999999999888665
No 374
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=49.82 E-value=1.1e+02 Score=28.08 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=50.4
Q ss_pred CCCCCceEEEEee--CcchHHHHHHHHHcCCCcceEEEEeCcH---HHHhcCCCCCCCeEEcCcccccCCCCCCCchhhH
Q 044090 110 NNNNEAKIKVIGV--GGGGSNAVNRMIESSMTGVEFWIVNTDA---QAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGM 184 (279)
Q Consensus 110 ~~~~~~kI~VIGI--GgaG~NIVd~l~~~~~~~ve~iavNTD~---~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~ 184 (279)
.+++.-++++||= +..|.-+...+..... +..++.+.+.. ..+... .-.+..
T Consensus 20 ~K~~~G~vliiaGs~~~~GA~ila~l~~~~~-g~~~v~~~~~~~~~~~i~~~----~pe~~~------------------ 76 (272)
T TIGR00196 20 HKGQYGRVLIIGGSDDYSGAPLLAALAALRA-GAGLVTVAAPENVITLINSV----SPELIV------------------ 76 (272)
T ss_pred CCCCCCeEEEEeCCCCCCcHHHHHHHHHHHh-CCCeEEEEEchhhHHHHhhc----CCEEEE------------------
Confidence 5677788988873 2344555555544432 55555554432 112111 111111
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHH-HHHHHHHHHcC
Q 044090 185 NAANESKVAIEEAISGADMIFVTAGMGGGTGTGAA-PVIAGIAKSMG 230 (279)
Q Consensus 185 eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~a-PvIaeiake~g 230 (279)
.-.++..+++++.++.+|.+.| |+|++++.. -.+++.+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~davvi----g~Gl~~~~~~~~l~~~~~~~~ 119 (272)
T TIGR00196 77 HRLGWKVDEDEELLERYDVVVI----GPGLGQDPSFKKAVEEVLELD 119 (272)
T ss_pred ecchhhHHHHHhhhccCCEEEE----cCCCCCCHHHHHHHHHHHhcC
Confidence 0011345667777889998877 777888764 33455556554
No 375
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=49.77 E-value=97 Score=27.32 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=48.1
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCCCCeE-EcCcccccCCCCCCCchhhHHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRL-QIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a~~ri-~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
|++.|.|- ||-|..++.++.+. +.+.+.++.+...+.... +....++ .+--+. .+ .+..++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~---G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv-------~d----~~~~~~~ 66 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKK---GARVVISSRNEENLEKALKELKEYGEVYAVKADL-------SD----KDDLKNL 66 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCC-------CC----HHHHHHH
Confidence 57889986 66788899999885 567777776665554310 0000111 111111 12 2334445
Q ss_pred HHHHHHHhcCCCEEEEEeecC
Q 044090 191 KVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+++.+.+...|.++..+|..
T Consensus 67 ~~~~~~~~g~id~li~naG~~ 87 (259)
T PRK08340 67 VKEAWELLGGIDALVWNAGNV 87 (259)
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 566666677889888877753
No 376
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=49.74 E-value=22 Score=34.43 Aligned_cols=32 Identities=22% Similarity=0.570 Sum_probs=25.7
Q ss_pred eEEEEeeCcchHHHHHHHHHcCC-------CcceEEEEe
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSM-------TGVEFWIVN 147 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~-------~~ve~iavN 147 (279)
||.|||-|.-|..++..|..... ..+..|..+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~ 39 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFE 39 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEec
Confidence 68999999999999999877541 457778773
No 377
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=49.67 E-value=80 Score=29.53 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
..++|+|.|. |..|..++.+|.+. +.+.+++.-+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~---G~~V~~~~r~ 43 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQR---GYTVHATLRD 43 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC---CCEEEEEeCC
Confidence 4568999995 88999999999985 4566665443
No 378
>PRK07478 short chain dehydrogenase; Provisional
Probab=49.39 E-value=1.2e+02 Score=26.44 Aligned_cols=86 Identities=16% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCC-CCeE-EcCcccccCCCCCCCchhhHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIP-ENRL-QIGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a-~~ri-~iG~~~t~G~GaG~np~~G~eaa 187 (279)
.+.++.|.|. |+.|..++.+|.+. +.+.+++..+...++... +.. ..++ .+--+. .++ +..
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~ 70 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFARE---GAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDV-------RDE----AYA 70 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCC-------CCH----HHH
Confidence 3457889986 56799999999885 557777766555544310 000 0111 111111 122 233
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
++..+++.+.....|.++..+|..+
T Consensus 71 ~~~~~~~~~~~~~id~li~~ag~~~ 95 (254)
T PRK07478 71 KALVALAVERFGGLDIAFNNAGTLG 95 (254)
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCC
Confidence 4445556666678899988887654
No 379
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=49.10 E-value=26 Score=34.59 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCceEEEEeeCcchHH--HHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGVGGGGSN--AVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~N--IVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
..+..|.|.|+|.+|.= +-.++.+++ .+++.+.++.-...+
T Consensus 210 ~g~vDi~V~gaGTGGTitgvGRylke~~-~~~kVv~vdp~~S~~ 252 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTITGVGRYLKEQN-PNIKVVGVDPQESIV 252 (362)
T ss_pred cCCCCEEEeccCCCceeechhHHHHHhC-CCCEEEEeCCCccee
Confidence 55778999999999964 667777665 578888888754444
No 380
>PRK09072 short chain dehydrogenase; Provisional
Probab=49.09 E-value=97 Score=27.33 Aligned_cols=39 Identities=18% Similarity=0.487 Sum_probs=29.7
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
.+.++.|.|. |+.|..++..+.+. +.+.+++..+...+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~---G~~V~~~~r~~~~~~ 43 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAA---GARLLLVGRNAEKLE 43 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEECCHHHHH
Confidence 3567999995 88999999999884 567777777665543
No 381
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=49.03 E-value=79 Score=31.69 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=36.1
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~ 168 (279)
.||+|+|=|..+.+++....+. |.+.++++++..........++..+.++.
T Consensus 3 kkiLi~~~ge~a~~~i~aa~~l---G~~~v~v~~~~d~~~~~~~~AD~~~~i~~ 53 (478)
T PRK08463 3 HKILIANRGEIAVRVIRACRDL---HIKSVAIYTEPDRECLHVKIADEAYRIGT 53 (478)
T ss_pred cEEEEECCCHHHHHHHHHHHHc---CCeEEEEECCCccCCcchhhcCEEEEcCC
Confidence 5899999999999999988774 68889998854331111112577777764
No 382
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=48.93 E-value=1.2e+02 Score=28.75 Aligned_cols=96 Identities=22% Similarity=0.334 Sum_probs=51.0
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEE-EeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWI-VNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVA 193 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~ia-vNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~ 193 (279)
-|+-|||+|.+.....---.+.-+..+++++ .+| +.++-. ..+.+..+..|. . +=.+..++.
T Consensus 3 G~L~VVGiGPG~~~~mT~~A~~al~~ad~ivGY~~-Y~d~i~-l~~~k~v~~s~m--------~-------~Ei~Ra~~A 65 (249)
T COG1010 3 GKLYVVGIGPGDPELMTPEARRALEEADVIVGYTT-YLDLIE-LRPGKEVIRSGM--------R-------EEIERAKEA 65 (249)
T ss_pred ceEEEEEeCCCChhhCCHHHHHHHHhCCEEEecHH-HHHHHh-cCCCCEEEeCCc--------H-------hHHHHHHHH
Confidence 4789999999986643222222234466554 444 222222 111112222211 1 112334555
Q ss_pred HHHHhcCCCEEEEEeecCCCccc-CHHHHHHHHHHHcC
Q 044090 194 IEEAISGADMIFVTAGMGGGTGT-GAAPVIAGIAKSMG 230 (279)
Q Consensus 194 I~~~Le~~D~vfIvAGLGGGTGS-G~aPvIaeiake~g 230 (279)
|+.+.++-+..+|- +|-.|- |.|.++.+++.+.+
T Consensus 66 ielA~~G~~ValVS---sGDpgVYgMA~lv~E~~~~~~ 100 (249)
T COG1010 66 IELAAEGRDVALVS---SGDPGVYGMAGLVLEAAEEEG 100 (249)
T ss_pred HHHHhcCCeEEEEe---CCCccHHHhHHHHHHHHHhcC
Confidence 66666666655554 566666 88999999987643
No 383
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=48.87 E-value=65 Score=27.67 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 184 MNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 184 ~eaa~e~~e~I~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
+.|+....+.|++.+ .....|+|++|-| .--|=+-++++.+.+.|..+..++..|.
T Consensus 6 E~Ag~~~a~~i~~~~~~~~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~~~~ 63 (169)
T PF03853_consen 6 ENAGRAIAELIRKLFGSPKGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLVGPP 63 (169)
T ss_dssp HHHHHHHHHHHHHHSTCCTT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEEecc
Confidence 456666777788888 4555666666543 3345567789999999988766555554
No 384
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=48.68 E-value=25 Score=35.55 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=30.0
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+|.|||+|-.|.+++..|.+. +.+.++.|-+.+..+.
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~---G~~V~v~drt~~~~~~ 37 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH---GFTVSVYNRTPEKTDE 37 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHH
Confidence 488999999999999999886 4577778877665543
No 385
>PRK06138 short chain dehydrogenase; Provisional
Probab=48.64 E-value=92 Score=26.93 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=48.6
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCCCCeEE-cCcccccCCCCCCCchhhHHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRLQ-IGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
+.++.|.|. |+-|..++.+|.+. +.+.+++..+.+.+.... +....++. +--+. .|+ +..++
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~ 70 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE---GARVVVADRDAEAAERVAAAIAAGGRAFARQGDV-------GSA----EAVEA 70 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC---CCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCC-------CCH----HHHHH
Confidence 457899987 78899999999885 567777766554443210 00011111 11111 122 33445
Q ss_pred HHHHHHHHhcCCCEEEEEeecC
Q 044090 190 SKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLG 211 (279)
..+++.+.+...|.|+-.+|..
T Consensus 71 ~~~~i~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 71 LVDFVAARWGRLDVLVNNAGFG 92 (252)
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 5566666677899888877653
No 386
>PRK06482 short chain dehydrogenase; Provisional
Probab=48.44 E-value=1.1e+02 Score=27.28 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=48.4
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANESKV 192 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~~e 192 (279)
+++.|.|. |+.|..++.+|.+. +.+.+++..+.+.+.........++. +--+. .++ +..++..+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~~~ 68 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLAR---GDRVAATVRRPDALDDLKARYGDRLWVLQLDV-------TDS----AAVRAVVD 68 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHhccCceEEEEccC-------CCH----HHHHHHHH
Confidence 46889985 88999999999885 45666776665555432100011221 11111 122 22334445
Q ss_pred HHHHHhcCCCEEEEEeecCC
Q 044090 193 AIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 193 ~I~~~Le~~D~vfIvAGLGG 212 (279)
++.+.+...|.||..+|...
T Consensus 69 ~~~~~~~~id~vi~~ag~~~ 88 (276)
T PRK06482 69 RAFAALGRIDVVVSNAGYGL 88 (276)
T ss_pred HHHHHcCCCCEEEECCCCCC
Confidence 55566678899988887653
No 387
>PLN02306 hydroxypyruvate reductase
Probab=48.32 E-value=23 Score=34.96 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=30.1
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
.+..+.++.|||.|..|..++.++.+ . -+++.+++|..
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~-~-fGm~V~~~d~~ 198 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVE-G-FKMNLIYYDLY 198 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHh-c-CCCEEEEECCC
Confidence 45778899999999999999988752 1 26688888753
No 388
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=48.26 E-value=35 Score=31.09 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eC
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NT 148 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NT 148 (279)
.+..++++.|.|+|..|.+++..|.+. ++..++| |+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~---g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEA---GAKVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEECC
Confidence 445789999999999999999999885 6777754 55
No 389
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=48.23 E-value=23 Score=33.78 Aligned_cols=39 Identities=15% Similarity=0.527 Sum_probs=29.0
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHc----CCCc----ceEEEEeCc
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIES----SMTG----VEFWIVNTD 149 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~----~~~~----ve~iavNTD 149 (279)
+....||.++|.|.||..|++.|... ++.. -++|.+|.+
T Consensus 22 ~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 22 PLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred ChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 35568999999999999999888765 4321 257777763
No 390
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=48.12 E-value=3e+02 Score=28.21 Aligned_cols=36 Identities=11% Similarity=0.407 Sum_probs=24.1
Q ss_pred CCCCCceEEE-EeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 110 NNNNEAKIKV-IGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 110 ~~~~~~kI~V-IGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
+...+..+.. ||++.-.---++.|.+. +++++++|+
T Consensus 232 d~~~~l~vgaavg~~~~~~~r~~~l~~a---g~d~i~iD~ 268 (505)
T PLN02274 232 GKDGKLLVGAAIGTRESDKERLEHLVKA---GVDVVVLDS 268 (505)
T ss_pred CCCCCEEEEEEEcCCccHHHHHHHHHHc---CCCEEEEeC
Confidence 3444444433 67666666777888874 789999998
No 391
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=48.10 E-value=1.5e+02 Score=25.60 Aligned_cols=86 Identities=12% Similarity=0.235 Sum_probs=49.1
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--C-CCCCeEE-cCcccccCCCCCCCchhhHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V-IPENRLQ-IGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v-~a~~ri~-iG~~~t~G~GaG~np~~G~eaa 187 (279)
...++.|.|. |+-|..++.+|.++ +.+.++++.+.+.+.... . ....++. +--+. .++ +..
T Consensus 6 ~~~~vlVtG~sg~iG~~l~~~L~~~---G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~ 71 (239)
T PRK07666 6 QGKNALITGAGRGIGRAVAIALAKE---GVNVGLLARTEENLKAVAEEVEAYGVKVVIATADV-------SDY----EEV 71 (239)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCC-------CCH----HHH
Confidence 3457888884 46788899998874 567777777655443210 0 0011221 11111 122 233
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
++..+++.+.+..+|.||..+|...
T Consensus 72 ~~~~~~~~~~~~~id~vi~~ag~~~ 96 (239)
T PRK07666 72 TAAIEQLKNELGSIDILINNAGISK 96 (239)
T ss_pred HHHHHHHHHHcCCccEEEEcCcccc
Confidence 4455566666778999888887643
No 392
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=47.69 E-value=1.2e+02 Score=26.82 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=49.7
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeE-EcCcccccCCCCCCCchhhHHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRL-QIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri-~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
.+.++.|.|. |+.|..++.+|.+. +.+.++++-+.+.++........++ .+-.+. .++ +..++.
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~~ 70 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAE---GARVAVLERSAEKLASLRQRFGDHVLVVEGDV-------TSY----ADNQRA 70 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhCCcceEEEccC-------CCH----HHHHHH
Confidence 3567889986 67899999999885 5677777766555543210001111 111111 122 233445
Q ss_pred HHHHHHHhcCCCEEEEEeecC
Q 044090 191 KVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+++.+.+...|.++-.+|..
T Consensus 71 ~~~~~~~~g~id~li~~ag~~ 91 (263)
T PRK06200 71 VDQTVDAFGKLDCFVGNAGIW 91 (263)
T ss_pred HHHHHHhcCCCCEEEECCCCc
Confidence 555666667889888888764
No 393
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=47.68 E-value=1.5e+02 Score=25.68 Aligned_cols=86 Identities=16% Similarity=0.269 Sum_probs=49.0
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
..+.++.|.|. |+.|..++.+|.++ +.+.+++.-+...+.... +. ...++. +--++ .++ +.
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~ 70 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARA---GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDV-------TNE----DA 70 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC---CCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCC-------CCH----HH
Confidence 34568999998 88999999999885 456666666554333210 00 011221 11111 112 22
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
.++..+++++.....|.++-++|..
T Consensus 71 ~~~~~~~~~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 71 VNAGIDKVAERFGSVDILVSNAGIQ 95 (262)
T ss_pred HHHHHHHHHHHcCCCCEEEECCccC
Confidence 3344555666667889888887764
No 394
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=47.67 E-value=1.4e+02 Score=25.47 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=47.9
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEE-eCcHHHHhcCC--CC-CCCeEEc-CcccccCCCCCCCchhhHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIV-NTDAQAMKVSP--VI-PENRLQI-GCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iav-NTD~~~L~~s~--v~-a~~ri~i-G~~~t~G~GaG~np~~G~ea 186 (279)
...+|.|+|. |+-|..++.++.+. +.+.+++ ..+...+.... .. ...++.+ --+. .+++ .
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~---g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~~----~ 69 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKE---GAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADV-------SSEE----D 69 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCC-------CCHH----H
Confidence 4458999996 89999999999875 5676666 66554443210 00 0111211 0111 1222 2
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
..+..+.+.+.+...|.||..+|..
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 70 VENLVEQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcC
Confidence 2333444555566899998888765
No 395
>PRK08264 short chain dehydrogenase; Validated
Probab=47.57 E-value=1.7e+02 Score=25.10 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=29.4
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcc-eEEEEeCcHHHHh
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGV-EFWIVNTDAQAMK 154 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~v-e~iavNTD~~~L~ 154 (279)
...++.|+|- |+.|..++.+|.+. +. ..+++..+...+.
T Consensus 5 ~~~~vlItGgsg~iG~~la~~l~~~---G~~~V~~~~r~~~~~~ 45 (238)
T PRK08264 5 KGKVVLVTGANRGIGRAFVEQLLAR---GAAKVYAAARDPESVT 45 (238)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CcccEEEEecChhhhh
Confidence 4457999995 88899999999885 45 6677777766554
No 396
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=47.57 E-value=1.5e+02 Score=28.60 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=56.1
Q ss_pred eEEEEeeCcchHH-HHHHHHHcCCCcceEEEEeCcHHHHhcCCC-----CCCCeEEcCcccccCCCCCCCchhhHHHHHH
Q 044090 116 KIKVIGVGGGGSN-AVNRMIESSMTGVEFWIVNTDAQAMKVSPV-----IPENRLQIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 116 kI~VIGIGgaG~N-IVd~l~~~~~~~ve~iavNTD~~~L~~s~v-----~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
+|.|||-.++|=. ++++|..... ++-.|......... ....++.+ -.|.|.. .+. ....++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~------~~v~~~~g~t~d~~~~~~~~~~~~~~l--iDTpG~~--~~~---~~~~~~ 67 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD------AIVSDTPGVTRDRKYGDAEWGGREFIL--IDTGGIE--EDD---DGLDKQ 67 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc------ceecCCCCcccCceEEEEEECCeEEEE--EECCCCC--Ccc---hhHHHH
Confidence 5889999999954 7899876531 11111111110000 00112221 1244432 111 223345
Q ss_pred HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEc
Q 044090 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIAT 238 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvt 238 (279)
..++....++++|+++++.-.--|- +-..-.+++++++.+.+++-++.
T Consensus 68 ~~~~~~~~~~~ad~vl~vvD~~~~~-~~~d~~i~~~l~~~~~piilVvN 115 (429)
T TIGR03594 68 IREQAEIAIEEADVILFVVDGREGL-TPEDEEIAKWLRKSGKPVILVAN 115 (429)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCC-CHHHHHHHHHHHHhCCCEEEEEE
Confidence 5666777889999776665432221 22234567788888888776654
No 397
>PRK00973 glucose-6-phosphate isomerase; Provisional
Probab=47.36 E-value=2e+02 Score=29.10 Aligned_cols=41 Identities=22% Similarity=0.498 Sum_probs=25.7
Q ss_pred ceEEEEeeCc--chHHHHHHHHHcC----C-----CcceEEEE-eCcHHHHhc
Q 044090 115 AKIKVIGVGG--GGSNAVNRMIESS----M-----TGVEFWIV-NTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGg--aG~NIVd~l~~~~----~-----~~ve~iav-NTD~~~L~~ 155 (279)
-.|.|||||| -|..++.+.+... . .+..++++ |+|...+..
T Consensus 72 ~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~ 124 (446)
T PRK00973 72 DNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTAS 124 (446)
T ss_pred CEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHH
Confidence 5799999998 5777776655432 0 11234444 778777754
No 398
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=47.18 E-value=32 Score=32.48 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=32.7
Q ss_pred ceEEEEeeCcchHHHHHHHHHcC-CCcceEEEEeCcHHHHh
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESS-MTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~-~~~ve~iavNTD~~~L~ 154 (279)
+||.+||.|..|.-|+..|++.+ .+..+.++.|-+.+.+.
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~ 42 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA 42 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH
Confidence 68999999999999999999988 45567777777655553
No 399
>PRK07890 short chain dehydrogenase; Provisional
Probab=47.11 E-value=1.2e+02 Score=26.32 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=48.9
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeE-EcCcccccCCCCCCCchhhHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRL-QIGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri-~iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
++++.|.|- |+-|..++.+|.++ +.+.+.++-+...++... +. ...++ .+--+. .+ .+..+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~----~~~~~ 70 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARA---GADVVLAARTAERLDEVAAEIDDLGRRALAVPTDI-------TD----EDQCA 70 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCC-------CC----HHHHH
Confidence 468899996 68899999999885 457777776555443210 00 01111 111111 11 22334
Q ss_pred HHHHHHHHHhcCCCEEEEEeecC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
...+++.+.+...|.+|..+|..
T Consensus 71 ~~~~~~~~~~g~~d~vi~~ag~~ 93 (258)
T PRK07890 71 NLVALALERFGRVDALVNNAFRV 93 (258)
T ss_pred HHHHHHHHHcCCccEEEECCccC
Confidence 45555666677899998888754
No 400
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=47.11 E-value=18 Score=29.57 Aligned_cols=36 Identities=36% Similarity=0.550 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHH
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake 228 (279)
+..+.|+++++.+|+|+.+ ||||-|---+..+.+++
T Consensus 46 ~I~~~l~~~~~~~dliitt----GG~g~g~~D~t~~~l~~ 81 (135)
T smart00852 46 AIKEALREALERADLVITT----GGTGPGPDDVTPEAVAE 81 (135)
T ss_pred HHHHHHHHHHhCCCEEEEc----CCCCCCCCcCcHHHHHH
Confidence 4456667777789977765 66776655444444444
No 401
>PRK07060 short chain dehydrogenase; Provisional
Probab=47.00 E-value=82 Score=27.11 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=30.9
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
..+.++.|.|. |+.|..++..+.+. +.+.+.++.+.+.+.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~---g~~V~~~~r~~~~~~ 47 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQR---GARVVAAARNAAALD 47 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHC---CCEEEEEeCCHHHHH
Confidence 44568999998 78999999999885 567777877665553
No 402
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=46.99 E-value=26 Score=35.40 Aligned_cols=39 Identities=15% Similarity=0.396 Sum_probs=33.5
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
......||.+.|.|-||..+++.|.+.+.+.-++|.+|+
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~ 233 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDR 233 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEec
Confidence 346678999999999999999999998877667888886
No 403
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=46.97 E-value=83 Score=28.79 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=23.9
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEe
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN 147 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavN 147 (279)
+++++|.|. |+.|..++.+|.+. +.+.+++.
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~---G~~V~~~~ 36 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFR---GYTINATV 36 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHC---CCEEEEEE
Confidence 468999995 88899999999985 45554443
No 404
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=46.73 E-value=1.1e+02 Score=24.99 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=42.4
Q ss_pred CCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhC-CEEEEEec
Q 044090 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNV-DTLIVIPN 271 (279)
Q Consensus 201 ~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~a-D~vIv~DN 271 (279)
+..+++..|.+.+.+---+.+..+++.+.+++.-.|+.-|.+.. -..||..+...+.+.- ..++++-+
T Consensus 35 ~~~ii~sGg~~~~~~~~ea~~m~~~l~~~gv~~~~I~~e~~s~~---T~ena~~~~~~~~~~~~~~i~lVTs 103 (150)
T cd06259 35 APKLIVSGGQGPGEGYSEAEAMARYLIELGVPAEAILLEDRSTN---TYENARFSAELLRERGIRSVLLVTS 103 (150)
T ss_pred CCEEEEcCCCCCCCCCCHHHHHHHHHHHcCCCHHHeeecCCCCC---HHHHHHHHHHHHHhcCCCeEEEECC
Confidence 55666643333333445788888999998876656665565444 3457777777777653 45555544
No 405
>PRK06181 short chain dehydrogenase; Provisional
Probab=46.69 E-value=1.5e+02 Score=26.01 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=48.0
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEE-cCcccccCCCCCCCchhhHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
.+++|.|. |+.|..++..+.+. +.+.++++.+...++... .. ...++. +-.+. .+ .+..++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~---g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl-------~~----~~~~~~ 67 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA---GAQLVLAARNETRLASLAQELADHGGEALVVPTDV-------SD----AEACER 67 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC-------CC----HHHHHH
Confidence 46889998 88899999999875 467778877655443210 00 011221 11111 12 223444
Q ss_pred HHHHHHHHhcCCCEEEEEeecCC
Q 044090 190 SKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
..+++.+.+...|.|+-++|...
T Consensus 68 ~~~~~~~~~~~id~vi~~ag~~~ 90 (263)
T PRK06181 68 LIEAAVARFGGIDILVNNAGITM 90 (263)
T ss_pred HHHHHHHHcCCCCEEEECCCccc
Confidence 45556556667898888776543
No 406
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=46.66 E-value=24 Score=33.10 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=25.3
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEE
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV 146 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav 146 (279)
.|||.|||.|..|+-++-+|.+.+. .+.+++=
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r 33 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILR 33 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEe
Confidence 5799999999999999999987642 4555444
No 407
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=46.52 E-value=1.4e+02 Score=28.88 Aligned_cols=54 Identities=11% Similarity=0.228 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcE
Q 044090 180 PSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILT 233 (279)
Q Consensus 180 p~~G~eaa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~t 233 (279)
|.+-.+-.++.++++++.++..|+|++..+|=-|-+...=--+++++++.++.+
T Consensus 109 p~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~v 162 (310)
T COG1105 109 PEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKV 162 (310)
T ss_pred CCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeE
Confidence 556667778888889999999999999878887877776666778888866443
No 408
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=46.24 E-value=37 Score=30.42 Aligned_cols=41 Identities=24% Similarity=0.298 Sum_probs=30.3
Q ss_pred CceEEEEeeC-------cchHHHHHHHHHcC--CCcceEEEEeCcHHHHh
Q 044090 114 EAKIKVIGVG-------GGGSNAVNRMIESS--MTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 114 ~~kI~VIGIG-------gaG~NIVd~l~~~~--~~~ve~iavNTD~~~L~ 154 (279)
.+||+|+|+| |.|..++++|.+.. ..+++++-..|....|-
T Consensus 3 ~~rilVlGiGN~L~gDDGvG~~va~~L~~~~~~~~~V~vid~Gt~g~~ll 52 (195)
T PRK10264 3 EQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDGGTQGLNLL 52 (195)
T ss_pred CCCEEEEEeCccccccCcHHHHHHHHHHhhcCCCCCeEEEECCCCHHHHH
Confidence 4689999999 68999999997653 34577766667655553
No 409
>PRK12367 short chain dehydrogenase; Provisional
Probab=46.17 E-value=93 Score=27.97 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=29.6
Q ss_pred CCCCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 108 VPNNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 108 ~~~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
.+.+..+.++.|.|. ||.|..++.++.+. +.+.+++.-+.
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~---G~~Vi~~~r~~ 48 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAK---GAKVIGLTHSK 48 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHC---CCEEEEEECCc
Confidence 455667778999987 67899999999875 56766665543
No 410
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=46.11 E-value=2.4e+02 Score=26.18 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhc-CCCEEEEEeecCCCccc----------CH------H----H----HHHHHHHHcCCcEEEEEcc
Q 044090 185 NAANESKVAIEEAIS-GADMIFVTAGMGGGTGT----------GA------A----P----VIAGIAKSMGILTVGIATV 239 (279)
Q Consensus 185 eaa~e~~e~I~~~Le-~~D~vfIvAGLGGGTGS----------G~------a----P----vIaeiake~gi~tvaIvtl 239 (279)
+..++..++|.+..+ +-+.|+|++|.+|. |. +. + + ++.++++++|+.+--++.+
T Consensus 31 ~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~-g~~~l~~~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~~q~llT 109 (266)
T PRK12314 31 ERIEQLVFVISDLMNKGKEVILVSSGAIGA-GLTKLKLDKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVVAQILLT 109 (266)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEeeCcccc-cceeeccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 445555666666553 34466666765542 22 11 1 1 1223344568776334333
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhCC
Q 044090 240 PFCFEGRRRAIQAQEGVANLRNNVD 264 (279)
Q Consensus 240 Pf~~Eg~~r~~NA~~gL~~L~e~aD 264 (279)
-..|+...+..|+...|++|.+.-.
T Consensus 110 ~~~~~~~~~~~~~~~~l~~ll~~g~ 134 (266)
T PRK12314 110 RDDFDSPKSRANVKNTFESLLELGI 134 (266)
T ss_pred cccccchHHHHHHHHHHHHHHHCCC
Confidence 3456777777899999999887543
No 411
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.04 E-value=32 Score=34.36 Aligned_cols=37 Identities=16% Similarity=0.335 Sum_probs=28.2
Q ss_pred CCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcH
Q 044090 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDA 150 (279)
Q Consensus 111 ~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~ 150 (279)
.....|+.|+|+|+.|-.++..|.+. +++..+.|.+.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~---G~~V~~~D~~~ 48 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSEL---GCDVVVADDNE 48 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHC---CCEEEEECCCh
Confidence 34556899999999999999888775 45666677543
No 412
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=45.78 E-value=2.2e+02 Score=31.76 Aligned_cols=39 Identities=31% Similarity=0.503 Sum_probs=28.7
Q ss_pred CCCceEEEEeeCcc--h---------HHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 112 NNEAKIKVIGVGGG--G---------SNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 112 ~~~~kI~VIGIGga--G---------~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
.++.||.|+|-|.- | -.++.++.+ .|.+.+++|.+.+..
T Consensus 552 ~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~---~G~~vi~v~~npetv 601 (1066)
T PRK05294 552 SDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALRE---AGYETIMVNCNPETV 601 (1066)
T ss_pred CCCceEEEECccccccccccccchhHHHHHHHHHH---CCCEEEEEeCCcccc
Confidence 35679999998863 2 445777766 478899999987754
No 413
>PRK14982 acyl-ACP reductase; Provisional
Probab=45.72 E-value=69 Score=31.29 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=31.9
Q ss_pred CCCCceEEEEee-CcchHHHHHHHHHcCCCc-ceEEEEeCcHHHHhc
Q 044090 111 NNNEAKIKVIGV-GGGGSNAVNRMIESSMTG-VEFWIVNTDAQAMKV 155 (279)
Q Consensus 111 ~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~-ve~iavNTD~~~L~~ 155 (279)
...+.++.|+|. |..|..++..|.+. .+ .+.+.+|-+...+..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~--~gv~~lilv~R~~~rl~~ 196 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAK--TGVAELLLVARQQERLQE 196 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhh--CCCCEEEEEcCCHHHHHH
Confidence 466789999999 89999999999754 12 356777877665544
No 414
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=45.57 E-value=33 Score=31.37 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.0
Q ss_pred ceEEEEeeCcchHHHHHHHHHcC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESS 137 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~ 137 (279)
|||.|||.|..|+-++..|.+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g 23 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAG 23 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC
Confidence 68999999999999999998864
No 415
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=45.52 E-value=1.6e+02 Score=25.95 Aligned_cols=82 Identities=18% Similarity=0.187 Sum_probs=48.2
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
..+..+.|.|. |+-|..++.+|.+. +.+.+.++.+...+.. .+-..+.-+. .+ .+..++.
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~---G~~v~~~~~~~~~~~~-----~~~~~~~~D~-------~~----~~~~~~~ 67 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLAN---GANVVNADIHGGDGQH-----ENYQFVPTDV-------SS----AEEVNHT 67 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCcccccc-----CceEEEEccC-------CC----HHHHHHH
Confidence 44567888885 67889999999885 5676666654433221 1111111111 11 2334445
Q ss_pred HHHHHHHhcCCCEEEEEeecCC
Q 044090 191 KVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.+++.+.....|.++-.+|...
T Consensus 68 ~~~~~~~~g~id~li~~Ag~~~ 89 (266)
T PRK06171 68 VAEIIEKFGRIDGLVNNAGINI 89 (266)
T ss_pred HHHHHHHcCCCCEEEECCcccC
Confidence 5556666678899988887653
No 416
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=45.40 E-value=2.9e+02 Score=26.68 Aligned_cols=112 Identities=25% Similarity=0.306 Sum_probs=62.2
Q ss_pred ceEEEEeeCcchHH--HHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhH-HHH----
Q 044090 115 AKIKVIGVGGGGSN--AVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGM-NAA---- 187 (279)
Q Consensus 115 ~kI~VIGIGgaG~N--IVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~-eaa---- 187 (279)
....|.|+|.+|.- +..+|.++. ++++.++++..-..+... .. |+....|.|.+.-|..-. ++.
T Consensus 170 ~d~fVagvGTGGTitGvar~Lk~~~-p~i~iv~vdP~~S~~~~~-----G~---g~~~i~GIG~~~ip~~~~~~~iD~v~ 240 (300)
T COG0031 170 VDAFVAGVGTGGTITGVARYLKERN-PNVRIVAVDPEGSVLLSG-----GE---GPHKIEGIGAGFVPENLDLDLIDEVI 240 (300)
T ss_pred CCEEEEeCCcchhHHHHHHHHHhhC-CCcEEEEECCCCCcccCC-----CC---CCcccCCCCCCcCCcccccccCceEE
Confidence 78999999999986 667776665 459999998753332211 11 344455677766663211 111
Q ss_pred ----HHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHH-HHHHHcC--CcEEEEEccCCCCc
Q 044090 188 ----NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIA-GIAKSMG--ILTVGIATVPFCFE 244 (279)
Q Consensus 188 ----~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIa-eiake~g--i~tvaIvtlPf~~E 244 (279)
++..+..+++.+ -+++++ |--||++-..+ +++++++ ..++.| +|-+-|
T Consensus 241 ~V~d~~A~~~~r~La~-~eGilv------G~SsGA~~~aa~~~a~~~~~g~~IVti--~pD~G~ 295 (300)
T COG0031 241 RVSDEEAIATARRLAR-EEGLLV------GISSGAALAAALKLAKELPAGKTIVTI--LPDSGE 295 (300)
T ss_pred EECHHHHHHHHHHHHH-HhCeee------cccHHHHHHHHHHHHHhcCCCCeEEEE--ECCCcc
Confidence 222333333332 234443 43466665554 7788875 444444 565433
No 417
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=45.14 E-value=27 Score=34.53 Aligned_cols=41 Identities=27% Similarity=0.426 Sum_probs=28.7
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
..+--+.|||+||.|+-+++.|++++..- ...||-|+-+|.
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qK--i~iVDfdqVSls 112 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQK--IRIVDFDQVSLS 112 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCce--EEEechhhccHh
Confidence 33446999999999999999999976432 234555544443
No 418
>PLN02463 lycopene beta cyclase
Probab=45.07 E-value=41 Score=33.64 Aligned_cols=31 Identities=19% Similarity=0.432 Sum_probs=24.4
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
..+.|||-|-||..++..+.+. +.+...++.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~---Gl~V~liE~ 59 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEA---GLSVCCIDP 59 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHC---CCeEEEecc
Confidence 5799999999999999998775 455555543
No 419
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=44.99 E-value=1.5e+02 Score=33.08 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=28.2
Q ss_pred CCceEEEEeeCcc-----------hHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 113 NEAKIKVIGVGGG-----------GSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 113 ~~~kI~VIGIGga-----------G~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
++.||.|+|.|.- +..++.++.+ .|.+.+++|.+....
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~---~G~~vI~v~~npetv 601 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRE---LGYETIMINYNPETV 601 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHh---CCCEEEEEecCCccc
Confidence 4579999998854 3456777766 478999999986653
No 420
>PRK05693 short chain dehydrogenase; Provisional
Probab=44.96 E-value=1.2e+02 Score=27.09 Aligned_cols=80 Identities=18% Similarity=0.327 Sum_probs=45.6
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHHHHHH
Q 044090 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAI 194 (279)
Q Consensus 116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~~e~I 194 (279)
++.|.|. |+.|..++..|.+. +.+.+++.-+.+.+.... ..+-..+--+. .++ +..++..+.+
T Consensus 3 ~vlItGasggiG~~la~~l~~~---G~~V~~~~r~~~~~~~~~--~~~~~~~~~Dl-------~~~----~~~~~~~~~~ 66 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAA---GYEVWATARKAEDVEALA--AAGFTAVQLDV-------NDG----AALARLAEEL 66 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHH--HCCCeEEEeeC-------CCH----HHHHHHHHHH
Confidence 5788886 77888899998774 567777765555444321 01101110111 112 2334445555
Q ss_pred HHHhcCCCEEEEEeecC
Q 044090 195 EEAISGADMIFVTAGMG 211 (279)
Q Consensus 195 ~~~Le~~D~vfIvAGLG 211 (279)
.+.....|.++-.+|.+
T Consensus 67 ~~~~~~id~vi~~ag~~ 83 (274)
T PRK05693 67 EAEHGGLDVLINNAGYG 83 (274)
T ss_pred HHhcCCCCEEEECCCCC
Confidence 55667899998888764
No 421
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=44.93 E-value=33 Score=31.75 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=26.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcC-CCcceEEEEeC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESS-MTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~-~~~ve~iavNT 148 (279)
++|.|||.|..|..++..|.+.+ ....+.++++-
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 57999999999999999998865 22345566654
No 422
>PRK07454 short chain dehydrogenase; Provisional
Probab=44.93 E-value=1.8e+02 Score=25.13 Aligned_cols=83 Identities=18% Similarity=0.306 Sum_probs=46.7
Q ss_pred ceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCC-CCeE-EcCcccccCCCCCCCchhhHHHHHH
Q 044090 115 AKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIP-ENRL-QIGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 115 ~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a-~~ri-~iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
.++.|.|. |+.|..++.+|.++ +.+.++++-+...+.... +.. ..++ .+--+. .++ +..+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~ 72 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKA---GWDLALVARSQDALEALAAELRSTGVKAAAYSIDL-------SNP----EAIAP 72 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccC-------CCH----HHHHH
Confidence 46888886 88899999999885 456777776555443210 000 0111 111111 122 22333
Q ss_pred HHHHHHHHhcCCCEEEEEeecC
Q 044090 190 SKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLG 211 (279)
..+.+.+.....|.++-.+|..
T Consensus 73 ~~~~~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 73 GIAELLEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHHHHHHcCCCCEEEECCCcc
Confidence 4555555666799888877654
No 423
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=44.72 E-value=41 Score=31.10 Aligned_cols=41 Identities=20% Similarity=0.399 Sum_probs=31.4
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
..+.++.|+|.||+|..++..|.+.+. .+..++|-+.+..+
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~--~~V~v~~R~~~~a~ 161 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGV--AEITIVNRTVERAE 161 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCC--CEEEEEeCCHHHHH
Confidence 455689999999999999999987542 46667787665543
No 424
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=44.60 E-value=28 Score=34.73 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=30.9
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
..+||.|.|.|..|-.++..|.++..+..+.++||-
T Consensus 59 ~~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd 94 (395)
T PLN03096 59 AKIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND 94 (395)
T ss_pred cccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 347999999999999999998886666789999984
No 425
>PRK06196 oxidoreductase; Provisional
Probab=44.56 E-value=1e+02 Score=28.37 Aligned_cols=85 Identities=11% Similarity=0.142 Sum_probs=48.8
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC--CCCCCCeEEcCcccccCCCCCCCchhhHHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS--PVIPENRLQIGCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s--~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~ 188 (279)
..+.++.|.|. |+.|..++.+|.+. +.+.+++.-+...+... .+ ..-.+ +--++ .++ +..+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~---G~~Vv~~~R~~~~~~~~~~~l-~~v~~-~~~Dl-------~d~----~~v~ 87 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQA---GAHVIVPARRPDVAREALAGI-DGVEV-VMLDL-------ADL----ESVR 87 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHh-hhCeE-EEccC-------CCH----HHHH
Confidence 34568999998 67899999999885 55666666554444321 01 00011 11111 122 2233
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
+..+++.+.....|.|+..||...
T Consensus 88 ~~~~~~~~~~~~iD~li~nAg~~~ 111 (315)
T PRK06196 88 AFAERFLDSGRRIDILINNAGVMA 111 (315)
T ss_pred HHHHHHHhcCCCCCEEEECCCCCC
Confidence 444555555678999998887643
No 426
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=44.38 E-value=1.2e+02 Score=27.09 Aligned_cols=86 Identities=12% Similarity=0.187 Sum_probs=48.8
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
..+.++.|.|. |+.|..++.+|.+. +.+.++++-+.+.++... +. ...++. +--+. .++ +.
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~---G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~ 73 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARA---GAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADV-------LDK----ES 73 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCC-------CCH----HH
Confidence 34567899987 78899999999875 456677766554443210 00 011221 11111 111 22
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+...+++.+.+...|.++-.+|..
T Consensus 74 v~~~~~~~~~~~g~id~li~~ag~~ 98 (278)
T PRK08277 74 LEQARQQILEDFGPCDILINGAGGN 98 (278)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3344555666677899888877643
No 427
>PRK14072 6-phosphofructokinase; Provisional
Probab=43.75 E-value=1.2e+02 Score=30.27 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhc--CCCEEEEEeecCCCccc-CHHHHHHHHHHHcC--CcEEEEEccCCCCc----------hh-HHHHH
Q 044090 188 NESKVAIEEAIS--GADMIFVTAGMGGGTGT-GAAPVIAGIAKSMG--ILTVGIATVPFCFE----------GR-RRAIQ 251 (279)
Q Consensus 188 ~e~~e~I~~~Le--~~D~vfIvAGLGGGTGS-G~aPvIaeiake~g--i~tvaIvtlPf~~E----------g~-~r~~N 251 (279)
++..+++.+.|+ +.|.++++ ||-|| -.+-.|++.+++.+ +++++| |..-+ |. .....
T Consensus 89 ~~~~~~~~~~l~~~~Id~LivI----GGdgS~~~a~~L~e~~~~~g~~i~vIgI---PkTIDNDl~gtD~t~GF~TA~~~ 161 (416)
T PRK14072 89 RAEYERLLEVFKAHDIGYFFYN----GGNDSMDTALKVSQLAKKMGYPIRCIGI---PKTIDNDLPGTDHCPGFGSAAKY 161 (416)
T ss_pred hHHHHHHHHHHHHcCCCEEEEE----CChHHHHHHHHHHHHHHHhCCCceEEEe---eecccCCCCCCCCCCChHHHHHH
Confidence 345566666664 77888886 56667 45667788887766 787777 66422 21 23345
Q ss_pred HHHHHHHH
Q 044090 252 AQEGVANL 259 (279)
Q Consensus 252 A~~gL~~L 259 (279)
+.+++.+|
T Consensus 162 i~~ai~~l 169 (416)
T PRK14072 162 IATSVLEA 169 (416)
T ss_pred HHHHHHHH
Confidence 66677777
No 428
>PRK08655 prephenate dehydrogenase; Provisional
Probab=43.68 E-value=39 Score=33.69 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=27.6
Q ss_pred ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
|||.||| .|..|..++..|.+.+ .+.++++.|.+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G---~~V~v~~r~~~~ 36 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKG---FEVIVTGRDPKK 36 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCC---CEEEEEECChHH
Confidence 6899997 8999999999998754 456666766554
No 429
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=43.61 E-value=63 Score=31.08 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=28.1
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
++|.|||-|+-|--++.+..+ .|+++++++.|..+
T Consensus 3 ~~igilG~Gql~~ml~~aa~~---lG~~v~~~d~~~~~ 37 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAP---LGYKVIVLDPDPDS 37 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHH---cCCEEEEEeCCCCC
Confidence 579999999999888877766 37889999876544
No 430
>PRK06701 short chain dehydrogenase; Provisional
Probab=43.51 E-value=1.4e+02 Score=27.23 Aligned_cols=88 Identities=14% Similarity=0.121 Sum_probs=47.9
Q ss_pred CCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCc----HHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhh
Q 044090 110 NNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTD----AQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVG 183 (279)
Q Consensus 110 ~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD----~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G 183 (279)
....++++.|.|. |+-|..++.+|.+. +.+.+.+..+ .+.+.........++. +--+. .+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~---G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~---- 107 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKE---GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDV-------SD---- 107 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHC---CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccC-------CC----
Confidence 3455678999985 77899999999985 4565555332 1222111000011121 11111 11
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 184 MNAANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 184 ~eaa~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+..++..+++.+.+...|.++..+|.+
T Consensus 108 ~~~~~~~~~~i~~~~~~iD~lI~~Ag~~ 135 (290)
T PRK06701 108 EAFCKDAVEETVRELGRLDILVNNAAFQ 135 (290)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccc
Confidence 2334455666666667889888777654
No 431
>PRK08703 short chain dehydrogenase; Provisional
Probab=43.44 E-value=2.2e+02 Score=24.61 Aligned_cols=89 Identities=18% Similarity=0.171 Sum_probs=49.6
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--C---CCCCeEEcCcccccCCCCCCCchhhHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V---IPENRLQIGCELTRGLGAGGNPSVGMN 185 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v---~a~~ri~iG~~~t~G~GaG~np~~G~e 185 (279)
+.+.++.|.|. |+.|..++..|.++ +.+.+++.-+.+.++... + .......+.-+.. +. -.+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~---g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~-------~~--~~~ 71 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAA---GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM-------SA--EEK 71 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHc---CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec-------cc--chH
Confidence 45568999996 78899999999875 557677766554443210 0 0000111111110 00 012
Q ss_pred HHHHHHHHHHHHh-cCCCEEEEEeecCC
Q 044090 186 AANESKVAIEEAI-SGADMIFVTAGMGG 212 (279)
Q Consensus 186 aa~e~~e~I~~~L-e~~D~vfIvAGLGG 212 (279)
..++..+++.+.+ ...|.|+..+|..+
T Consensus 72 ~~~~~~~~i~~~~~~~id~vi~~ag~~~ 99 (239)
T PRK08703 72 EFEQFAATIAEATQGKLDGIVHCAGYFY 99 (239)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEeccccc
Confidence 2344455666666 67899988887644
No 432
>PRK07063 short chain dehydrogenase; Provisional
Probab=43.44 E-value=1.7e+02 Score=25.64 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC---CCCeEE-cCcccccCCCCCCCchhhH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI---PENRLQ-IGCELTRGLGAGGNPSVGM 184 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~---a~~ri~-iG~~~t~G~GaG~np~~G~ 184 (279)
..+.++.|.|. |+.|..++.+|.+. +.+.++++-+...++... +. ...++. +-.+. .+ .
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~---G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~----~ 70 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFARE---GAAVALADLDAALAERAAAAIARDVAGARVLAVPADV-------TD----A 70 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccC-------CC----H
Confidence 34567888886 57788899999885 567777766655544310 00 011221 11111 11 2
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 185 NAANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 185 eaa~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
+..++..+++.+.....|.++-.+|..
T Consensus 71 ~~~~~~~~~~~~~~g~id~li~~ag~~ 97 (260)
T PRK07063 71 ASVAAAVAAAEEAFGPLDVLVNNAGIN 97 (260)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence 334455666666777899998888754
No 433
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=43.10 E-value=46 Score=30.51 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=30.3
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
...++.|+|.|++|..++..|.+. +.+.+++|-+.+..+
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~---g~~v~v~~R~~~~~~ 154 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKA---DCNVIIANRTVSKAE 154 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHC---CCEEEEEeCCHHHHH
Confidence 356899999999999999999874 457777787655443
No 434
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=42.98 E-value=29 Score=32.43 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=25.5
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
|||.|||.|..|+-++-.|.+.+ .+...++-+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G---~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAG---ADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC---CcEEEEecH
Confidence 78999999999999999998864 344445543
No 435
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=42.57 E-value=34 Score=33.36 Aligned_cols=38 Identities=24% Similarity=0.345 Sum_probs=30.7
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC---cHHHH
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT---DAQAM 153 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT---D~~~L 153 (279)
++||.|+|+|..|-..+..+.+. ++++.++||. |.+.|
T Consensus 5 ~lrVaI~G~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~ 45 (338)
T PLN02358 5 KIRIGINGFGRIGRLVARVVLQR--DDVELVAVNDPFITTEYM 45 (338)
T ss_pred ceEEEEEeecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHH
Confidence 58999999999999999887764 6799999874 44444
No 436
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=42.55 E-value=41 Score=31.44 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=25.5
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
|||.|||.|..|+.++..|.+.+ ..+. .+..|.+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g-~~V~--l~~r~~~ 34 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKK-ISVN--LWGRNHT 34 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC-CeEE--EEecCHH
Confidence 68999999999999999998764 2343 4444443
No 437
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=42.55 E-value=30 Score=33.87 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=20.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHc
Q 044090 115 AKIKVIGVGGGGSNAVNRMIES 136 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~ 136 (279)
+||.|||-|-||..++.+|.+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~ 23 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL 23 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh
Confidence 5899999999999999999765
No 438
>PRK07856 short chain dehydrogenase; Provisional
Probab=42.52 E-value=2.3e+02 Score=24.70 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=46.8
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEE-cCcccccCCCCCCCchhhHHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
...++.|.|. |+.|..++.+|.+. +.+.+++..+... .. ...++. +--+. .++ +..++.
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~---g~~v~~~~r~~~~-~~----~~~~~~~~~~D~-------~~~----~~~~~~ 65 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAA---GATVVVCGRRAPE-TV----DGRPAEFHAADV-------RDP----DQVAAL 65 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC---CCEEEEEeCChhh-hh----cCCceEEEEccC-------CCH----HHHHHH
Confidence 4568889886 56799999999885 5576666655433 11 011221 11111 122 233445
Q ss_pred HHHHHHHhcCCCEEEEEeecC
Q 044090 191 KVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+.+.+.....|.||-.+|..
T Consensus 66 ~~~~~~~~~~id~vi~~ag~~ 86 (252)
T PRK07856 66 VDAIVERHGRLDVLVNNAGGS 86 (252)
T ss_pred HHHHHHHcCCCCEEEECCCCC
Confidence 556666667889998888654
No 439
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=42.39 E-value=2.7e+02 Score=25.36 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcE
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILT 233 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~t 233 (279)
.+..+.+.+.++++|.|++....-++.-.-....+++.+++.++++
T Consensus 131 ~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~g~~v 176 (315)
T TIGR02198 131 ARLLAAIREQLASADAVVLSDYAKGVLTPRVVQEVIAAARKHGKPV 176 (315)
T ss_pred HHHHHHHHhhhhhCCEEEEecCCCCccCHHHHHHHHHHHHhcCCCE
Confidence 4445566777899998888532212221122345567777777654
No 440
>PLN02686 cinnamoyl-CoA reductase
Probab=42.35 E-value=80 Score=30.14 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=27.1
Q ss_pred CCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEe
Q 044090 110 NNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN 147 (279)
Q Consensus 110 ~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavN 147 (279)
..+..++|+|.|. |..|..++.+|.+. +.+.+++.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~---G~~V~~~~ 84 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRH---GYSVRIAV 84 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHC---CCEEEEEe
Confidence 4456779999997 89999999999985 55655543
No 441
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=42.22 E-value=2.6e+02 Score=27.00 Aligned_cols=110 Identities=14% Similarity=0.050 Sum_probs=56.4
Q ss_pred ceEEEEeeCcch----HHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHH--HHH
Q 044090 115 AKIKVIGVGGGG----SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMN--AAN 188 (279)
Q Consensus 115 ~kI~VIGIGgaG----~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~e--aa~ 188 (279)
.||.|+|-|.+| ..++++|.+.+ .+++|+.+-.. .+....++. .+... .....+-++.-.. -..
T Consensus 6 ~ki~i~aGgtsGhi~paal~~~l~~~~-~~~~~~g~gg~--~m~~~g~~~----~~~~~---~l~v~G~~~~l~~~~~~~ 75 (385)
T TIGR00215 6 PTIALVAGEASGDILGAGLRQQLKEHY-PNARFIGVAGP--RMAAEGCEV----LYSME---ELSVMGLREVLGRLGRLL 75 (385)
T ss_pred CeEEEEeCCccHHHHHHHHHHHHHhcC-CCcEEEEEccH--HHHhCcCcc----ccChH---HhhhccHHHHHHHHHHHH
Confidence 577777655554 46778887643 46777776543 233322210 11111 0111111111000 012
Q ss_pred HHHHHHHHHhc--CCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 189 ESKVAIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 189 e~~e~I~~~Le--~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
....++++.++ ..|.|+.+ | +.++...++..++.++++++-.+ .|.
T Consensus 76 ~~~~~~~~~l~~~kPd~vi~~---g---~~~~~~~~a~aa~~~gip~v~~i-~P~ 123 (385)
T TIGR00215 76 KIRKEVVQLAKQAKPDLLVGI---D---APDFNLTKELKKKDPGIKIIYYI-SPQ 123 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEe---C---CCCccHHHHHHHhhCCCCEEEEe-CCc
Confidence 23334555553 68877655 3 35666778888999999988443 565
No 442
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=41.86 E-value=94 Score=29.95 Aligned_cols=24 Identities=29% Similarity=0.751 Sum_probs=20.9
Q ss_pred cCCCcccCHHHHHHHHHHHcCCcE
Q 044090 210 MGGGTGTGAAPVIAGIAKSMGILT 233 (279)
Q Consensus 210 LGGGTGSG~aPvIaeiake~gi~t 233 (279)
+||.+|.|-+.+-.++|+++|+..
T Consensus 94 IGGasGVGkStIA~ElA~rLgI~~ 117 (299)
T COG2074 94 IGGASGVGKSTIAGELARRLGIRS 117 (299)
T ss_pred ecCCCCCChhHHHHHHHHHcCCce
Confidence 499999999998899999988654
No 443
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=41.71 E-value=76 Score=30.51 Aligned_cols=47 Identities=21% Similarity=0.332 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEE
Q 044090 186 AANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGI 236 (279)
Q Consensus 186 aa~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaI 236 (279)
+..+-.+.++++.+.+|+++|+ ||.-|+-+-.|++++++.+..++-|
T Consensus 196 aT~~RQ~a~~~La~~vD~miVV----Gg~~SsNT~kL~~i~~~~~~~t~~I 242 (298)
T PRK01045 196 ATQNRQEAVKELAPQADLVIVV----GSKNSSNSNRLREVAEEAGAPAYLI 242 (298)
T ss_pred hhHHHHHHHHHHHhhCCEEEEE----CCCCCccHHHHHHHHHHHCCCEEEE
Confidence 3445566788888899988887 5667888999999999876555443
No 444
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=41.66 E-value=77 Score=30.19 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=28.3
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
.+++|.|||-|+-|..++..+.+ .+.++++++.+..
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~---~G~~v~~~~~~~~ 46 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQR---LGVEVIAVDRYAN 46 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCCC
Confidence 56799999999888888877766 3778888887654
No 445
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=41.41 E-value=2.2e+02 Score=24.17 Aligned_cols=86 Identities=13% Similarity=0.223 Sum_probs=45.6
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC-cHHHHhcC--CC-CCCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMKVS--PV-IPENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT-D~~~L~~s--~v-~a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
.+.++.|.|. |+.|..++..|.+. +.+.+++.. +...+... .. ....++. +-.+. .++ +.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~---G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~ 69 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQ---GANVVINYASSEAGAEALVAEIGALGGKALAVQGDV-------SDA----ES 69 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCC-------CCH----HH
Confidence 4568999986 78899999999885 456544432 22111110 00 0011221 11111 122 22
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
..+..+++.+.+...|.|+..+|...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~~~ 95 (248)
T PRK05557 70 VERAVDEAKAEFGGVDILVNNAGITR 95 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCC
Confidence 33445566666678899888876544
No 446
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=41.34 E-value=47 Score=32.55 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=32.6
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHh
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMK 154 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~ 154 (279)
..+-++.|+|+||-|.-.+...... +++.+|+++..+.++
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~---ga~Via~~~~~~K~e 204 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM---GAEVIAITRSEEKLE 204 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc---CCeEEEEeCChHHHH
Confidence 5578999999999999998887664 489999998666553
No 447
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=41.31 E-value=65 Score=31.58 Aligned_cols=37 Identities=24% Similarity=0.497 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHc
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~ 229 (279)
+..+.|+++++.+|+|+.+ ||||.|---++.+.+++.
T Consensus 223 ~i~~~l~~a~~~~Dliitt----GG~s~g~~D~~~~al~~~ 259 (394)
T cd00887 223 ALREALEEALEEADVVITS----GGVSVGDYDFVKEVLEEL 259 (394)
T ss_pred HHHHHHHHHhhCCCEEEEe----CCCCCCcchhHHHHHHhC
Confidence 3456677777889988876 778888777777777765
No 448
>PRK07814 short chain dehydrogenase; Provisional
Probab=41.30 E-value=1.7e+02 Score=25.85 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=50.1
Q ss_pred CCCceEEEEeeC-cchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGVG-GGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGIG-gaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
..+.++.|.|.+ +.|..++..|.++ +.+.+.+..+...++... +. ...++. +.-+. .+ .+.
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~---G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~----~~~ 73 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEA---GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADL-------AH----PEA 73 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC-------CC----HHH
Confidence 456789999976 5788899999874 567777776665544310 00 011221 11111 11 233
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
.++..+++.+.+...|.+|-.+|..
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag~~ 98 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVGGT 98 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4445566666667889888877643
No 449
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=41.27 E-value=2.5e+02 Score=26.93 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=27.7
Q ss_pred CceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 114 EAKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 114 ~~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
.+||.|+| -|..|..+++.|.++ +.++..++.++..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~ 39 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASER 39 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChh
Confidence 57999998 899999999988754 5667777745443
No 450
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=41.14 E-value=1.3e+02 Score=29.96 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=32.3
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
..+-.+.|+|+|+.|-+.+......+ --..+|||++...|+.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~ag--A~~IiAvD~~~~Kl~~ 225 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAG--AGRIIAVDINPEKLEL 225 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcC--CceEEEEeCCHHHHHH
Confidence 44668999999999999998876643 2345889988777664
No 451
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=40.99 E-value=1e+02 Score=32.09 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=31.5
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHH
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQA 152 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~ 152 (279)
.+.+||.|||-|+-|.-++.+..+ .|.++++++.|..+
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~---lG~~Vi~ld~~~~a 57 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQ---MGIKVKVLDPLEDC 57 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH---CCCEEEEEeCCCCC
Confidence 677899999999999999888876 46888888887543
No 452
>PRK08618 ornithine cyclodeaminase; Validated
Probab=40.99 E-value=1.6e+02 Score=27.89 Aligned_cols=40 Identities=13% Similarity=0.308 Sum_probs=27.5
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcce-EEEEeCcHHHHh
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVE-FWIVNTDAQAMK 154 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve-~iavNTD~~~L~ 154 (279)
+..++.|||.|+.|-.++..+... .+++ ..++|-+.+...
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~--~~~~~v~v~~r~~~~a~ 166 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAV--RDIERVRVYSRTFEKAY 166 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhc--CCccEEEEECCCHHHHH
Confidence 355899999999999998777653 2333 344576655543
No 453
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=40.87 E-value=2.6e+02 Score=28.65 Aligned_cols=43 Identities=12% Similarity=0.217 Sum_probs=31.5
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcc--eEEEEeCcHHHHhc
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGV--EFWIVNTDAQAMKV 155 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~v--e~iavNTD~~~L~~ 155 (279)
....||.|+|. |-.|.+.++=+.++ ...+ ..++.+++.+-|..
T Consensus 55 ~~~KkI~ILGSTGSIGtqtLdVI~~~-pd~f~vvaLaag~Ni~lL~~ 100 (454)
T PLN02696 55 DGPKPISLLGSTGSIGTQTLDIVAEN-PDKFKVVALAAGSNVTLLAD 100 (454)
T ss_pred CCccEEEEecCCcHhhHHHHHHHHhC-ccccEEEEEECCCCHHHHHH
Confidence 33469999999 99999999887765 2334 44666778777665
No 454
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=40.85 E-value=1.8e+02 Score=22.85 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=21.5
Q ss_pred CEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCC
Q 044090 202 DMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPF 241 (279)
Q Consensus 202 D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf 241 (279)
|.+|++ +..|-| --.-..++.+|+.++++++|...|.
T Consensus 49 d~vi~i-S~sG~t--~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 49 DVVIAI-SNSGET--DELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CEEEEE-eCCCCC--HHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 454444 555543 2233345667788888888865444
No 455
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=40.84 E-value=1.9e+02 Score=30.50 Aligned_cols=89 Identities=18% Similarity=0.287 Sum_probs=52.9
Q ss_pred CCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC---CCCeE-EcCcccccCCCCCCCchh
Q 044090 110 NNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI---PENRL-QIGCELTRGLGAGGNPSV 182 (279)
Q Consensus 110 ~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~---a~~ri-~iG~~~t~G~GaG~np~~ 182 (279)
....+.++.|.|. |+.|..++.+|.+. +.+.++++.+...+.... +. ...++ .+--+.+ +
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~---Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvt-------d--- 476 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAE---GAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVT-------D--- 476 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhC---CCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCC-------C---
Confidence 3455678899987 77899999999875 567777777665544310 00 00111 1111111 1
Q ss_pred hHHHHHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 183 GMNAANESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 183 G~eaa~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.+..++..+++.+.+...|.++-.+|...
T Consensus 477 -~~~v~~a~~~i~~~~g~iDilV~nAG~~~ 505 (676)
T TIGR02632 477 -EQAVKAAFADVALAYGGVDIVVNNAGIAT 505 (676)
T ss_pred -HHHHHHHHHHHHHhcCCCcEEEECCCCCC
Confidence 22344455566666778999988888654
No 456
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.84 E-value=39 Score=33.21 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=25.9
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
.+.||.|||+|+.|-.+++.|.+. |++....|.
T Consensus 8 ~~~~i~viG~G~~G~~~a~~l~~~---G~~v~~~D~ 40 (460)
T PRK01390 8 AGKTVAVFGLGGSGLATARALVAG---GAEVIAWDD 40 (460)
T ss_pred CCCEEEEEeecHhHHHHHHHHHHC---CCEEEEECC
Confidence 346899999999999998888774 556666664
No 457
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=40.79 E-value=43 Score=32.29 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=27.8
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
....+.++.|||.|..|..++.++... +.+.++.|-
T Consensus 142 ~~l~gktvGIiG~GrIG~avA~r~~~F---gm~v~y~~~ 177 (324)
T COG1052 142 FDLRGKTLGIIGLGRIGQAVARRLKGF---GMKVLYYDR 177 (324)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhcC---CCEEEEECC
Confidence 456788999999999999999988643 456555554
No 458
>PRK07832 short chain dehydrogenase; Provisional
Probab=40.73 E-value=1.9e+02 Score=25.67 Aligned_cols=82 Identities=18% Similarity=0.313 Sum_probs=46.5
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--C--CCCCeEE-cCcccccCCCCCCCchhhHHHHHH
Q 044090 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V--IPENRLQ-IGCELTRGLGAGGNPSVGMNAANE 189 (279)
Q Consensus 116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v--~a~~ri~-iG~~~t~G~GaG~np~~G~eaa~e 189 (279)
++.|+|- |+-|..++..+.+. +.+.+++..+.+.++... + ...+.+. +--+. .++ +..++
T Consensus 2 ~vlItGas~giG~~la~~la~~---G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~~----~~~~~ 67 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQ---GAELFLTDRDADGLAQTVADARALGGTVPEHRALDI-------SDY----DAVAA 67 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeC-------CCH----HHHHH
Confidence 6788884 77888999998874 567677766655443210 0 0001111 10011 122 33444
Q ss_pred HHHHHHHHhcCCCEEEEEeecC
Q 044090 190 SKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLG 211 (279)
..+++.+.....|.++..+|.+
T Consensus 68 ~~~~~~~~~~~id~lv~~ag~~ 89 (272)
T PRK07832 68 FAADIHAAHGSMDVVMNIAGIS 89 (272)
T ss_pred HHHHHHHhcCCCCEEEECCCCC
Confidence 5566666677899998888764
No 459
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=40.54 E-value=1.9e+02 Score=24.84 Aligned_cols=83 Identities=20% Similarity=0.376 Sum_probs=46.9
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEEc-CcccccCCCCCCCchhhHHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQI-GCELTRGLGAGGNPSVGMNAAN 188 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~i-G~~~t~G~GaG~np~~G~eaa~ 188 (279)
..+++|.|. |+.|..++.+|.+. +.+.+.++.+...+.... +. ...++.+ --+. .++ +..+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~-------~~~----~~~~ 68 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE---GAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDI-------TDR----DSVD 68 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC---CCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCC-------CCH----HHHH
Confidence 467899985 77899999999885 557666766554433210 00 0112211 1111 122 2334
Q ss_pred HHHHHHHHHhcCCCEEEEEeec
Q 044090 189 ESKVAIEEAISGADMIFVTAGM 210 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGL 210 (279)
+..+.+.+.+...|.+|..+|.
T Consensus 69 ~~~~~~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 69 TAVAAAEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 4455566666788988887764
No 460
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=40.43 E-value=1.8e+02 Score=26.58 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcE
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILT 233 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~t 233 (279)
+..+.+.+.++++|.|++...+.++......-.+.+.+++.++++
T Consensus 115 ~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~a~~~g~~v 159 (309)
T PRK13508 115 GFLHHFKQLLESVEVVAISGSLPAGLPVDYYAQLIELANQAGKPV 159 (309)
T ss_pred HHHHHHHHhccCCCEEEEeCCCCCCcCHHHHHHHHHHHHHCCCEE
Confidence 344566778899999888755544432233444567778877654
No 461
>PRK13243 glyoxylate reductase; Reviewed
Probab=40.42 E-value=39 Score=32.36 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCCCCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCc
Q 044090 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTD 149 (279)
Q Consensus 110 ~~~~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD 149 (279)
.+..+.+|.|||+|..|..++.++...+ .+.+++|..
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G---~~V~~~d~~ 182 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFG---MRILYYSRT 182 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCC---CEEEEECCC
Confidence 4678899999999999999999997654 466677653
No 462
>PRK08251 short chain dehydrogenase; Provisional
Probab=40.36 E-value=1.4e+02 Score=25.77 Aligned_cols=85 Identities=18% Similarity=0.384 Sum_probs=50.5
Q ss_pred ceEEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--C---CCCCeEEcCc-ccccCCCCCCCchhhHHHH
Q 044090 115 AKIKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V---IPENRLQIGC-ELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 115 ~kI~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v---~a~~ri~iG~-~~t~G~GaG~np~~G~eaa 187 (279)
.++.|.| -|+-|..++.+|.++ +.+++++.-+...++... . .+..++.+-+ +. .+ .+..
T Consensus 3 k~vlItGas~giG~~la~~l~~~---g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~----~~~~ 68 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAK---GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDV-------ND----HDQV 68 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCC-------CC----HHHH
Confidence 4678887 677888899999885 457777766554443210 0 0011222211 11 11 2344
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGG 213 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGG 213 (279)
+...+++.+.+...|.+|..+|.+..
T Consensus 69 ~~~~~~~~~~~~~id~vi~~ag~~~~ 94 (248)
T PRK08251 69 FEVFAEFRDELGGLDRVIVNAGIGKG 94 (248)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCC
Confidence 55666777778899999998887544
No 463
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=40.24 E-value=1.1e+02 Score=31.06 Aligned_cols=77 Identities=14% Similarity=0.146 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCC----CchhHHHHHHHHHHHHHHHhCC
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC----FEGRRRAIQAQEGVANLRNNVD 264 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~----~Eg~~r~~NA~~gL~~L~e~aD 264 (279)
+..+++.++|..+.--+|++|-|.- .+++...|.++++.++++++ +++.. .|. -+.+.-...+++.+.+|
T Consensus 194 ~~~~~~~~~L~~AkrPvi~~G~g~~-~~~a~~~l~~lae~~~~pv~---tt~~gkg~~p~~--hp~~~g~~~~~~~~~aD 267 (554)
T TIGR03254 194 DSVDRAVELLKDAKRPLILLGKGAA-YAQADEEIREFVEKTGIPFL---PMSMAKGLLPDT--HPQSAAAARSFALAEAD 267 (554)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCcc-ccChHHHHHHHHHHHCCCEE---EcCCcceeCCCC--CchhhhHHHHHHHhcCC
Confidence 4566677788888744444454443 35788899999999998876 33421 011 11122233456677899
Q ss_pred EEEEEec
Q 044090 265 TLIVIPN 271 (279)
Q Consensus 265 ~vIv~DN 271 (279)
.+|++-.
T Consensus 268 lvl~lG~ 274 (554)
T TIGR03254 268 VVMLVGA 274 (554)
T ss_pred EEEEECC
Confidence 9998763
No 464
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=40.19 E-value=1.2e+02 Score=30.90 Aligned_cols=77 Identities=10% Similarity=0.074 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCC---C-chhHHHH------HHHHHHHHH
Q 044090 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFC---F-EGRRRAI------QAQEGVANL 259 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~---~-Eg~~r~~------NA~~gL~~L 259 (279)
..+++.++|..+.--+|++|-|. ..+++...+.++++.++++++.- |.. + |. ...+ .......++
T Consensus 195 ~i~~~~~~l~~A~rPvi~~G~g~-~~~~a~~~l~~lae~~~~pv~tt---~~gkg~~~~~-hp~~~G~~G~~~~~~~~~~ 269 (574)
T PRK06882 195 QIKKALKALLVAKKPVLFVGGGV-ITAECSEQLTQFAQKLNLPVTSS---LMGLGAYPST-DKQFLGMLGMHGTYEANNA 269 (574)
T ss_pred HHHHHHHHHHhCCCCEEEECCCc-cccchHHHHHHHHHHhCCCEEEc---CccCcCCCCC-ChhhcCCCcccccHHHHHH
Confidence 35566667777785555555433 45688899999999999986542 221 1 11 1111 112233445
Q ss_pred HHhCCEEEEEec
Q 044090 260 RNNVDTLIVIPN 271 (279)
Q Consensus 260 ~e~aD~vIv~DN 271 (279)
.+.+|.+|++-.
T Consensus 270 l~~aDlvl~lG~ 281 (574)
T PRK06882 270 MHESDLILGIGV 281 (574)
T ss_pred HHhCCEEEEECC
Confidence 567899988763
No 465
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=39.88 E-value=48 Score=30.46 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=26.1
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
|+|.|+|.|..|.-++.++.+. +.+.+.-++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~a---g~eV~igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKA---GHEVIIGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhC---CCeEEEecC
Confidence 7899999999999999999885 467666666
No 466
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=39.61 E-value=35 Score=35.49 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHc
Q 044090 189 ESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229 (279)
Q Consensus 189 e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~ 229 (279)
+..+.|+++++.||+|+++ |||+.|.--++.+.++++
T Consensus 234 ~i~~~l~~al~~~DlVItt----GGtS~G~~D~~~~al~~l 270 (546)
T PRK14497 234 SIKNEIKRAISVADVLILT----GGTSAGEKDFVHQAIREL 270 (546)
T ss_pred HHHHHHHHhhhcCCEEEEc----CCccCCCCccHHHHHhhc
Confidence 3445566777889988886 667777766666666664
No 467
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=39.59 E-value=62 Score=30.11 Aligned_cols=66 Identities=20% Similarity=0.323 Sum_probs=43.0
Q ss_pred hcCCCEEEEEeecCCCcccCHHHH-HHHHHHHcCCcEEEEEccCCCCchhHHHHHHHHHHHHHHHhCCEEEEEechH
Q 044090 198 ISGADMIFVTAGMGGGTGTGAAPV-IAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDK 273 (279)
Q Consensus 198 Le~~D~vfIvAGLGGGTGSG~aPv-Iaeiake~gi~tvaIvtlPf~~Eg~~r~~NA~~gL~~L~e~aD~vIv~DNd~ 273 (279)
+..-|.+||+..-|=.+ .|+ +|+++|+.|..++++..+-.+..-.-|.. +=+.|.+++|. |+||.+
T Consensus 102 i~~~DVliviSnSGrNp----vpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~----SGK~Ly~~aDv--VlDN~a 168 (243)
T COG4821 102 IRPNDVLIVISNSGRNP----VPIEVAEYAREKGAKVIAVTSLDYSQSQASRHK----SGKLLYEFADV--VLDNGA 168 (243)
T ss_pred CCCCCEEEEEeCCCCCC----cchHHHHHHHhcCCeEEEEehhhhhhhchhccc----chhHHhhhcce--eeeCCC
Confidence 45778888875444333 443 57889999999999988777533322221 23567788885 567754
No 468
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=39.55 E-value=71 Score=31.92 Aligned_cols=39 Identities=33% Similarity=0.557 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHH-HcC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK-SMG 230 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiak-e~g 230 (279)
++..+.|+++++.||.|+++ ||+..|-.-++-++++ ++|
T Consensus 230 ~~l~~~i~~a~~~~DviIts----GG~SvG~~D~v~~~l~~~lG 269 (404)
T COG0303 230 EALREAIEKALSEADVIITS----GGVSVGDADYVKAALERELG 269 (404)
T ss_pred HHHHHHHHHhhhcCCEEEEe----CCccCcchHhHHHHHHhcCC
Confidence 34566788888899999885 6777788888888888 454
No 469
>PRK10466 hybD hydrogenase 2 maturation endopeptidase; Provisional
Probab=39.54 E-value=54 Score=28.13 Aligned_cols=39 Identities=26% Similarity=0.302 Sum_probs=28.8
Q ss_pred ceEEEEeeC-------cchHHHHHHHHHc-CC-CcceEEEEeCcHHHH
Q 044090 115 AKIKVIGVG-------GGGSNAVNRMIES-SM-TGVEFWIVNTDAQAM 153 (279)
Q Consensus 115 ~kI~VIGIG-------gaG~NIVd~l~~~-~~-~~ve~iavNTD~~~L 153 (279)
||+.|+|+| |.|..++++|.+. .. .+++++-..|....|
T Consensus 1 m~ilVlGiGN~l~gDDGvG~~va~~L~~~~~~~~~v~vid~gt~~~~l 48 (164)
T PRK10466 1 MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTAGMEL 48 (164)
T ss_pred CceEEEEECchhhccCcHHHHHHHHHHHhcCCCCCeEEEeccccHHHH
Confidence 689999999 6899999999764 22 467776667755444
No 470
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=39.46 E-value=47 Score=32.39 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=24.9
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
...+|.|||+|+.|-.++..|.+. |.+....|.
T Consensus 5 ~~~~i~v~G~G~sG~s~~~~l~~~---G~~v~~~D~ 37 (438)
T PRK03806 5 QGKKVVIIGLGLTGLSCVDFFLAR---GVTPRVIDT 37 (438)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHHC---CCeEEEEcC
Confidence 345899999999999999766654 456666664
No 471
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=39.39 E-value=35 Score=32.14 Aligned_cols=38 Identities=16% Similarity=0.514 Sum_probs=27.6
Q ss_pred CCCceEEEEeeCcchHHHHHHHHHc----CCCc----ceEEEEeCc
Q 044090 112 NNEAKIKVIGVGGGGSNAVNRMIES----SMTG----VEFWIVNTD 149 (279)
Q Consensus 112 ~~~~kI~VIGIGgaG~NIVd~l~~~----~~~~----ve~iavNTD 149 (279)
....||.++|.|.||.-|++-|.+. +++. -++|.+|.+
T Consensus 23 l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 23 LSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred HHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 4567999999999999999888776 5432 457888863
No 472
>PRK14096 pgi glucose-6-phosphate isomerase; Provisional
Probab=39.12 E-value=1.1e+02 Score=31.90 Aligned_cols=41 Identities=27% Similarity=0.516 Sum_probs=24.9
Q ss_pred ceEEEEeeCc--chHHHHHHHHHcCCCcceE-EEEeCcHHHHhc
Q 044090 115 AKIKVIGVGG--GGSNAVNRMIESSMTGVEF-WIVNTDAQAMKV 155 (279)
Q Consensus 115 ~kI~VIGIGg--aG~NIVd~l~~~~~~~ve~-iavNTD~~~L~~ 155 (279)
..|.+||||| -|-.++-..+........+ +.=|+|...+..
T Consensus 115 ~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~ 158 (528)
T PRK14096 115 TDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDR 158 (528)
T ss_pred CeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHH
Confidence 4799999998 3555555444432122333 334889888765
No 473
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.10 E-value=1.7e+02 Score=25.68 Aligned_cols=83 Identities=18% Similarity=0.323 Sum_probs=46.3
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC-cHHHHhcCCCCCCCeEEcCcccccCCCCCCCchhhHHHHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANES 190 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT-D~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~~G~eaa~e~ 190 (279)
.++++.|.|. |+.|..++.+|.+. +.+.+++.. +...++... ...-..+--+. .++ +..++.
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~---G~~v~~~~~~~~~~~~~l~--~~~~~~~~~Dl-------~~~----~~~~~~ 69 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLRE---GAKVAVLYNSAENEAKELR--EKGVFTIKCDV-------GNR----DQVKKS 69 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCcHHHHHHHH--hCCCeEEEecC-------CCH----HHHHHH
Confidence 3568999986 78899999999885 456555433 222222111 01111111111 122 334445
Q ss_pred HHHHHHHhcCCCEEEEEeecC
Q 044090 191 KVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 191 ~e~I~~~Le~~D~vfIvAGLG 211 (279)
.+++.+.+...|.++..+|..
T Consensus 70 ~~~~~~~~~~id~li~~ag~~ 90 (255)
T PRK06463 70 KEVVEKEFGRVDVLVNNAGIM 90 (255)
T ss_pred HHHHHHHcCCCCEEEECCCcC
Confidence 556666677889998888764
No 474
>PLN02649 glucose-6-phosphate isomerase
Probab=38.86 E-value=93 Score=32.50 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=30.4
Q ss_pred ceEEEEeeCc--chHHHHHHHHHcCCC------cceEE-EEeCcHHHHhcC--CCCCCCeEEc
Q 044090 115 AKIKVIGVGG--GGSNAVNRMIESSMT------GVEFW-IVNTDAQAMKVS--PVIPENRLQI 166 (279)
Q Consensus 115 ~kI~VIGIGg--aG~NIVd~l~~~~~~------~ve~i-avNTD~~~L~~s--~v~a~~ri~i 166 (279)
-.|.+||||| -|-.++-..+..... +.++. +=|+|...+... .+.++..+.|
T Consensus 148 ~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~p~~TL~i 210 (560)
T PLN02649 148 TNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLDPETTLVV 210 (560)
T ss_pred ceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCCcccEEEE
Confidence 3699999998 788887665443211 11333 347898876652 2334444443
No 475
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=38.79 E-value=2.4e+02 Score=24.67 Aligned_cols=87 Identities=15% Similarity=0.216 Sum_probs=47.6
Q ss_pred CCCceEEEEeeC-cchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--C-CCCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGVG-GGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--V-IPENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGIG-gaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v-~a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
..+.++.|+|.. +.|..++.+|.++ +.+.+.++-+.+.+.... + ....++. +-.+. .++ +.
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~---G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-------~~~----~~ 74 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATA---GASVVVSDINADAANHVVDEIQQLGGQAFACRCDI-------TSE----QE 74 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC-------CCH----HH
Confidence 456789999865 4488999999885 456666665544433210 0 0001111 11111 122 22
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.++..+.+.+.+...|.++..+|...
T Consensus 75 i~~~~~~~~~~~~~~d~li~~ag~~~ 100 (255)
T PRK06113 75 LSALADFALSKLGKVDILVNNAGGGG 100 (255)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 33344455555677899988887643
No 476
>PRK07576 short chain dehydrogenase; Provisional
Probab=38.75 E-value=2.1e+02 Score=25.45 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAM 153 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L 153 (279)
.+.++.|.|. |+.|..++.+|.+. +.+.++++-+...+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~---G~~V~~~~r~~~~~ 46 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARA---GANVAVASRSQEKV 46 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHH
Confidence 4458999988 78899999999874 56777776554444
No 477
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=38.61 E-value=91 Score=27.57 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=24.5
Q ss_pred EEEEe-eCcchHHHHHHHHHcCCCcceEEEEeCcHH
Q 044090 117 IKVIG-VGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151 (279)
Q Consensus 117 I~VIG-IGgaG~NIVd~l~~~~~~~ve~iavNTD~~ 151 (279)
|+|.| .|..|.+++..|.+. +.+.++++-+..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~---g~~V~~~~r~~~ 33 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD---GHEVTILTRSPP 33 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc---CCEEEEEeCCCC
Confidence 45676 488999999999884 567777776544
No 478
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=38.61 E-value=50 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHc
Q 044090 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~ 229 (279)
..+.|+++++++|+|+++ ||++.|---++.+.++++
T Consensus 249 i~~~l~~a~~~~DlIItT----GG~S~G~~D~v~~~l~~~ 284 (419)
T PRK14690 249 LAARLDRAAAEADVILTS----GGASAGDEDHVSALLREA 284 (419)
T ss_pred HHHHHHHhCccCCEEEEc----CCccCCCcchHHHHHHhc
Confidence 345566667789977775 778888665665665554
No 479
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=38.36 E-value=1.2e+02 Score=30.83 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=33.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVS 156 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s 156 (279)
++|.|||+|-.|-=.+-.+.+ .|++.+-+|-|.+..++.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~---~G~~ViG~DIn~~~Vd~l 48 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFAS---AGFKVIGVDINQKKVDKL 48 (436)
T ss_pred eEEEEEccccccHHHHHHHHH---cCCceEeEeCCHHHHHHH
Confidence 899999999999998877766 467888999998887764
No 480
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=38.33 E-value=3.2e+02 Score=27.87 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=21.4
Q ss_pred CCCceE-EEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 112 NNEAKI-KVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 112 ~~~~kI-~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
..+..+ ..||+..---..++.|++ .++++++||+
T Consensus 227 ~GrL~Vgaavg~~~~~~~~~~~l~~---ag~d~i~id~ 261 (495)
T PTZ00314 227 NGQLLVGAAISTRPEDIERAAALIE---AGVDVLVVDS 261 (495)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHH---CCCCEEEEec
Confidence 333333 345554444567777777 4789999987
No 481
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=38.29 E-value=49 Score=31.19 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
++..+.++.+++.+|.||++.|||=
T Consensus 48 ~~I~~~l~~a~~r~D~vI~tGGLGP 72 (255)
T COG1058 48 DRIVEALREASERADVVITTGGLGP 72 (255)
T ss_pred HHHHHHHHHHHhCCCEEEECCCcCC
Confidence 4567788889999999999877763
No 482
>PRK05858 hypothetical protein; Provisional
Probab=38.26 E-value=1.5e+02 Score=30.12 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEEccCCCCch--hHHHHHHHHHHHHHHHhCCEEE
Q 044090 190 SKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEG--RRRAIQAQEGVANLRNNVDTLI 267 (279)
Q Consensus 190 ~~e~I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIvtlPf~~Eg--~~r~~NA~~gL~~L~e~aD~vI 267 (279)
..+++-++|.++.--+|++|-|. .-+++...|.++++.++++++. .|....- ...+...-....++.+.+|.+|
T Consensus 192 ~i~~~~~~L~~AkrPvil~G~g~-~~~~a~~~l~~lae~lg~pV~t---t~~~kg~~~~~hpl~~~~~~~~~l~~aD~vl 267 (542)
T PRK05858 192 ALARAAGLLAEAQRPVIMAGTDV-WWGHAEAALLRLAEELGIPVLM---NGMGRGVVPADHPLAFSRARGKALGEADVVL 267 (542)
T ss_pred HHHHHHHHHHhCCCcEEEECCCc-cccChHHHHHHHHHHhCCCEEE---cCCcCCCCCCCCchhhhHHHHHHHHhCCEEE
Confidence 35666677778874444444333 2357788899999999988663 3332100 0112222334455667899999
Q ss_pred EEec
Q 044090 268 VIPN 271 (279)
Q Consensus 268 v~DN 271 (279)
.+.-
T Consensus 268 ~vG~ 271 (542)
T PRK05858 268 VVGV 271 (542)
T ss_pred EECC
Confidence 9873
No 483
>PRK06186 hypothetical protein; Validated
Probab=38.10 E-value=41 Score=31.10 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=32.1
Q ss_pred HhcCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEEEEE
Q 044090 197 AISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA 237 (279)
Q Consensus 197 ~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tvaIv 237 (279)
.|+++|+|+|.-|.| --|.-+.-..++.|++.+++.++|+
T Consensus 50 ~l~~~dgilvpgGfg-~rg~~Gki~ai~~Are~~iP~LGIC 89 (229)
T PRK06186 50 DLAGFDGIWCVPGSP-YRNDDGALTAIRFARENGIPFLGTC 89 (229)
T ss_pred hHhhCCeeEeCCCCC-cccHhHHHHHHHHHHHcCCCeEeec
Confidence 488999999988764 3566666667899999999999986
No 484
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=37.78 E-value=1.7e+02 Score=32.65 Aligned_cols=92 Identities=20% Similarity=0.289 Sum_probs=51.8
Q ss_pred CCceEEEEeeCcc--h---------HHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCch
Q 044090 113 NEAKIKVIGVGGG--G---------SNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPS 181 (279)
Q Consensus 113 ~~~kI~VIGIGga--G---------~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np~ 181 (279)
++.||.|+|.|.- | ..++..|.+ .|.+.+.+|.+.+........+ .++.+- |.
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~---~G~~vI~vn~npetvs~~~~~a-D~~y~e------------p~ 617 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKK---EGYETIMINNNPETVSTDYDTA-DRLYFE------------PL 617 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHH---cCCEEEEEeCCccccccccccC-ceEEEc------------cC
Confidence 5789999998852 2 234666655 4789999999877543221112 233331 11
Q ss_pred hhHHHHHHHHHHHHHHh--cCCCEEEEEeecCCCcccCHHHHHHHHHHHcCCcEE
Q 044090 182 VGMNAANESKVAIEEAI--SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234 (279)
Q Consensus 182 ~G~eaa~e~~e~I~~~L--e~~D~vfIvAGLGGGTGSG~aPvIaeiake~gi~tv 234 (279)
..|.|.+.+ ++.|+|+. ++||-| ...+++.+.+.|+.++
T Consensus 618 --------~~e~vl~I~~~e~~dgVI~--~~g~~~----~~~la~~le~~Gi~il 658 (1068)
T PRK12815 618 --------TLEDVLNVAEAENIKGVIV--QFGGQT----AINLAKGLEEAGLTIL 658 (1068)
T ss_pred --------CHHHHHHHHhhcCCCEEEE--ecCcHH----HHHHHHHHHHCCCeEE
Confidence 123344443 47887776 345543 3345555666665544
No 485
>PRK05872 short chain dehydrogenase; Provisional
Probab=37.66 E-value=2.1e+02 Score=26.13 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=52.3
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCCCCeEEc-CcccccCCCCCCCchhhHHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIPENRLQI-GCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a~~ri~i-G~~~t~G~GaG~np~~G~eaa 187 (279)
..+.++.|.|. ||.|..++..+.+. +.+.++++-+.+.++... .....++.. --+. .| .+..
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~---G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv-------~d----~~~v 72 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHAR---GAKLALVDLEEAELAALAAELGGDDRVLTVVADV-------TD----LAAM 72 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecC-------CC----HHHH
Confidence 45668899986 77899999999875 567777777766654310 100111111 0111 11 2334
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
++..+++.+.+...|.++..+|...
T Consensus 73 ~~~~~~~~~~~g~id~vI~nAG~~~ 97 (296)
T PRK05872 73 QAAAEEAVERFGGIDVVVANAGIAS 97 (296)
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCC
Confidence 4555667677778899988887643
No 486
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=37.64 E-value=40 Score=32.00 Aligned_cols=33 Identities=15% Similarity=0.314 Sum_probs=26.6
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEEEEe
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVN 147 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavN 147 (279)
+||.+||+|-.|.-+++.|......+++..+|+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~ 35 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALT 35 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEe
Confidence 699999999999999999866545567766653
No 487
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=37.56 E-value=45 Score=27.87 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.7
Q ss_pred eEEEEeeCcchHHHHHHHHHcCCCcceEEEEe
Q 044090 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVN 147 (279)
Q Consensus 116 kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavN 147 (279)
+|.|||-|.||..++.+|.. .+.+.+.++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~---~~~~v~ii~ 29 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR---PGAKVLIIE 29 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH---TTSEEEEES
T ss_pred CEEEEecHHHHHHHHHHHhc---CCCeEEEEe
Confidence 68999999999999999985 467777774
No 488
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=37.51 E-value=1.1e+02 Score=27.25 Aligned_cols=93 Identities=19% Similarity=0.371 Sum_probs=53.0
Q ss_pred CceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCCCCCCCeEEcCcccccCCCCCCCc-hhhHHHHHHHHH
Q 044090 114 EAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNP-SVGMNAANESKV 192 (279)
Q Consensus 114 ~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~v~a~~ri~iG~~~t~G~GaG~np-~~G~eaa~e~~e 192 (279)
.++|..||.=|||-.-+=+.+...+ +..| +|||.. +..- ....|. + -+ ..|++...+...
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L-~~~F--~D~D~~-Ie~~-----~g~sI~-e---------IF~~~GE~~FR~~E~ 62 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKAL-NLPF--IDTDQE-IEKR-----TGMSIA-E---------IFEEEGEEGFRRLET 62 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHc-CCCc--ccchHH-HHHH-----HCcCHH-H---------HHHHHhHHHHHHHHH
Confidence 4689999999999987776666432 4454 788854 4331 011110 0 01 126777777666
Q ss_pred HHHHHhcCCC-EEEEEeecCCCcccCHHHHHHHHHHHcC
Q 044090 193 AIEEAISGAD-MIFVTAGMGGGTGTGAAPVIAGIAKSMG 230 (279)
Q Consensus 193 ~I~~~Le~~D-~vfIvAGLGGGTGSG~aPvIaeiake~g 230 (279)
++.+.+...+ .|+ ++|||+ -..+..-+.+++.+
T Consensus 63 ~vl~~l~~~~~~Vi---aTGGG~--v~~~enr~~l~~~g 96 (172)
T COG0703 63 EVLKELLEEDNAVI---ATGGGA--VLSEENRNLLKKRG 96 (172)
T ss_pred HHHHHHhhcCCeEE---ECCCcc--ccCHHHHHHHHhCC
Confidence 6655554444 433 567765 22344455666666
No 489
>PRK08267 short chain dehydrogenase; Provisional
Probab=37.51 E-value=1.6e+02 Score=25.79 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=27.8
Q ss_pred eEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhc
Q 044090 116 KIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKV 155 (279)
Q Consensus 116 kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~ 155 (279)
+++|+|. |+.|..++.+|.+. +.+.++++-+...++.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~---G~~V~~~~r~~~~~~~ 40 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAE---GWRVGAYDINEAGLAA 40 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHC---CCeEEEEeCCHHHHHH
Confidence 5888885 66799999999885 5677777777666543
No 490
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=37.50 E-value=65 Score=31.83 Aligned_cols=51 Identities=25% Similarity=0.420 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhc--CCCEEEEEeecCCCcccCHHHHHHHHH-HHcCCcEEEEEccCC
Q 044090 184 MNAANESKVAIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIA-KSMGILTVGIATVPF 241 (279)
Q Consensus 184 ~eaa~e~~e~I~~~Le--~~D~vfIvAGLGGGTGSG~aPvIaeia-ke~gi~tvaIvtlPf 241 (279)
.++..+..+++.+.+. ++|.|+ |+|||+ +--+++++ .+++.+.++|-|.|.
T Consensus 66 ~~a~~~ev~~~~~~~~~~~~d~vI---GVGGGk----~iD~aK~~A~~~~~pfIsvPT~AS 119 (360)
T COG0371 66 GEASEEEVERLAAEAGEDGADVVI---GVGGGK----TIDTAKAAAYRLGLPFISVPTIAS 119 (360)
T ss_pred CccCHHHHHHHHHHhcccCCCEEE---EecCcH----HHHHHHHHHHHcCCCEEEecCccc
Confidence 3455667777877764 677554 667776 66666654 568999999887776
No 491
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=37.43 E-value=44 Score=31.41 Aligned_cols=36 Identities=14% Similarity=0.276 Sum_probs=26.8
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
...+|.|||-|-+|...+-.|.+....+.++..++-
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~ 37 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeC
Confidence 457899999999999999998775223555555554
No 492
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=37.43 E-value=48 Score=32.23 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=27.9
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEE-eCc
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIV-NTD 149 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iav-NTD 149 (279)
.++||.|||.|..|..++..+.++ ++++.+++ +.+
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~--pd~ELVgV~dr~ 37 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQ--PDMELVGVFSRR 37 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhC--CCcEEEEEEcCC
Confidence 368999999999999998888654 57888765 555
No 493
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=37.36 E-value=2.7e+02 Score=24.17 Aligned_cols=86 Identities=12% Similarity=0.190 Sum_probs=48.9
Q ss_pred CCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CC-CCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 112 NNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VI-PENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 112 ~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~-a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
....++.|.|. |+-|..++.+|.++ +.+.+.++.+...+.... +. ...++. +--+. .++ +.
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~ 74 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGA---GAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDI-------ADE----EA 74 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccC-------CCH----HH
Confidence 45668889886 56788899999875 567777777655443210 00 011111 10011 122 23
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMG 211 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLG 211 (279)
.....+++.+.+...|.++..+|..
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~~ 99 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGAR 99 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCC
Confidence 3445556666667788888777643
No 494
>PRK05855 short chain dehydrogenase; Validated
Probab=37.05 E-value=1.7e+02 Score=28.75 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=53.2
Q ss_pred CCCCCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeCcHHHHhcCC--CCC-CCeE-EcCcccccCCCCCCCchhhH
Q 044090 110 NNNNEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSP--VIP-ENRL-QIGCELTRGLGAGGNPSVGM 184 (279)
Q Consensus 110 ~~~~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNTD~~~L~~s~--v~a-~~ri-~iG~~~t~G~GaG~np~~G~ 184 (279)
..+..+++.|+|- ||.|..++.+|.+. +.+.+.+.-+...++... +.. ..++ .+--+. .++
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~---G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv-------~~~---- 376 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFARE---GAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDV-------SDA---- 376 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCC-------CCH----
Confidence 4466778999986 88999999999885 556666666655443210 000 0111 111111 122
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 185 NAANESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 185 eaa~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
+..++..+++.+.....|.++-.||.+.
T Consensus 377 ~~~~~~~~~~~~~~g~id~lv~~Ag~~~ 404 (582)
T PRK05855 377 DAMEAFAEWVRAEHGVPDIVVNNAGIGM 404 (582)
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCccCC
Confidence 2344455666666678899999988754
No 495
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.96 E-value=52 Score=32.17 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=25.9
Q ss_pred CCceEEEEeeCcchHHHHHHHHHcCCCcceEEEEeC
Q 044090 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNT 148 (279)
Q Consensus 113 ~~~kI~VIGIGgaG~NIVd~l~~~~~~~ve~iavNT 148 (279)
...+|.|+|+|+.|-.++..|.+. +.+..+.|.
T Consensus 4 ~~~~~~v~G~g~~G~~~a~~l~~~---g~~v~~~d~ 36 (445)
T PRK04308 4 QNKKILVAGLGGTGISMIAYLRKN---GAEVAAYDA 36 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCEEEEEeC
Confidence 456899999999999998888775 456556664
No 496
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=36.86 E-value=39 Score=32.15 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcCCCcceEE
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFW 144 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~~~~ve~i 144 (279)
|||.|+|.|..|+-..-+|.+.+ ..+.++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 79999999999999999998876 444443
No 497
>PRK12937 short chain dehydrogenase; Provisional
Probab=36.86 E-value=2.7e+02 Score=23.84 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=46.8
Q ss_pred CCceEEEEee-CcchHHHHHHHHHcCCCcceEEEEeC-cHHHHhcC--CC-CCCCeEE-cCcccccCCCCCCCchhhHHH
Q 044090 113 NEAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVNT-DAQAMKVS--PV-IPENRLQ-IGCELTRGLGAGGNPSVGMNA 186 (279)
Q Consensus 113 ~~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavNT-D~~~L~~s--~v-~a~~ri~-iG~~~t~G~GaG~np~~G~ea 186 (279)
.+.++.|.|. |+-|..++..|.+.+ .+.+.+.. +...++.. .. ....++. +-.+. .++ +.
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl-------~~~----~~ 69 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADG---FAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADV-------ADA----AA 69 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCC---CEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCC-------CCH----HH
Confidence 3468999986 889999999998854 45544432 21111110 00 0011221 11111 122 33
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 187 ANESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 187 a~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
.++..+++.+.+...|.+|..+|...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~~~ 95 (245)
T PRK12937 70 VTRLFDAAETAFGRIDVLVNNAGVMP 95 (245)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCC
Confidence 44555666666778999988887643
No 498
>PRK08198 threonine dehydratase; Provisional
Probab=36.83 E-value=72 Score=31.05 Aligned_cols=80 Identities=21% Similarity=0.366 Sum_probs=43.4
Q ss_pred HHHHhcCCCEEEEEeecCCCcccCHHHHHHHHHHHc--CCcEEEEEccCCC--------------------CchhHHHHH
Q 044090 194 IEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM--GILTVGIATVPFC--------------------FEGRRRAIQ 251 (279)
Q Consensus 194 I~~~Le~~D~vfIvAGLGGGTGSG~aPvIaeiake~--gi~tvaIvtlPf~--------------------~Eg~~r~~N 251 (279)
|.+.+.+.|.||+..| ||||=+|.+ ..+|++ .+.+++|-+.... .+|......
T Consensus 164 I~~q~~~~d~vv~~vG-~GG~~~Gi~----~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~ 238 (404)
T PRK08198 164 ILEDLPDVDTVVVPIG-GGGLISGVA----TAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRP 238 (404)
T ss_pred HHHhCCCCCEEEEEeC-HhHHHHHHH----HHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCc
Confidence 3344456788888665 334434444 444543 3666776542211 011100011
Q ss_pred HHHHHHHHHHhCCEEEEEechHHHhhh
Q 044090 252 AQEGVANLRNNVDTLIVIPNDKLLTAV 278 (279)
Q Consensus 252 A~~gL~~L~e~aD~vIv~DNd~L~~i~ 278 (279)
....+.-++++.|.++.++.+..+..+
T Consensus 239 ~~~~~~~~~~~~d~~v~V~d~e~~~a~ 265 (404)
T PRK08198 239 GDLTFEIIRELVDDVVTVSDEEIARAI 265 (404)
T ss_pred CHHHHHHHHHhCCEEEEECHHHHHHHH
Confidence 123455667899999999999877543
No 499
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=36.77 E-value=43 Score=32.61 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=29.3
Q ss_pred ceEEEEeeCcchHHHHHHHHHcC-CCcceEEEEeC
Q 044090 115 AKIKVIGVGGGGSNAVNRMIESS-MTGVEFWIVNT 148 (279)
Q Consensus 115 ~kI~VIGIGgaG~NIVd~l~~~~-~~~ve~iavNT 148 (279)
+||.|.|.|..|-.++..|.+++ ..+++.++||.
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind 36 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINE 36 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 58999999999999999988864 35799999994
No 500
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.77 E-value=2.8e+02 Score=23.91 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=45.4
Q ss_pred CceEEEEee-CcchHHHHHHHHHcCCCcceEEEEe-CcHHHHhcC--CCC-CCCeE-EcCcccccCCCCCCCchhhHHHH
Q 044090 114 EAKIKVIGV-GGGGSNAVNRMIESSMTGVEFWIVN-TDAQAMKVS--PVI-PENRL-QIGCELTRGLGAGGNPSVGMNAA 187 (279)
Q Consensus 114 ~~kI~VIGI-GgaG~NIVd~l~~~~~~~ve~iavN-TD~~~L~~s--~v~-a~~ri-~iG~~~t~G~GaG~np~~G~eaa 187 (279)
..+++|.|. |+.|..++.+|.+. +.+.+.+. .+.+.+... ... ...++ .+-.+. .+ .+..
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~---g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-------~~----~~~~ 71 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKE---GSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADV-------ST----REGC 71 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHC---CCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEecc-------CC----HHHH
Confidence 458889885 45899999999875 44543332 222222210 000 00111 111111 11 1233
Q ss_pred HHHHHHHHHHhcCCCEEEEEeecCC
Q 044090 188 NESKVAIEEAISGADMIFVTAGMGG 212 (279)
Q Consensus 188 ~e~~e~I~~~Le~~D~vfIvAGLGG 212 (279)
+...+++.+.+...|.||..+|.+.
T Consensus 72 ~~~~~~~~~~~~~~d~vi~~ag~~~ 96 (252)
T PRK06077 72 ETLAKATIDRYGVADILVNNAGLGL 96 (252)
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCC
Confidence 4456666777788999999988743
Done!