RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 044090
(279 letters)
>gnl|CDD|236468 PRK09330, PRK09330, cell division protein FtsZ; Validated.
Length = 384
Score = 302 bits (775), Expect = e-102
Identities = 108/169 (63%), Positives = 126/169 (74%), Gaps = 2/169 (1%)
Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
N A IKVIGVGGGG NAVNRMIE + GVEF NTDAQA+ S ++Q+G +
Sbjct: 9 EENQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKA--PVKIQLGEK 66
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
LTRGLGAG NP VG AA ES+ I EA+ GADM+F+TAGMGGGTGTGAAPV+A IAK +
Sbjct: 67 LTRGLGAGANPEVGRKAAEESREEIREALEGADMVFITAGMGGGTGTGAAPVVAEIAKEL 126
Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
GILTV + T PF FEG++R QA+EG+ LR +VDTLIVIPNDKLL V
Sbjct: 127 GILTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVV 175
>gnl|CDD|100021 cd02201, FtsZ_type1, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 304
Score = 278 bits (714), Expect = 7e-94
Identities = 112/164 (68%), Positives = 129/164 (78%), Gaps = 2/164 (1%)
Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
AKIKVIGVGGGG NAVNRMIES + GVEF NTDAQA+ S N++Q+G ELTRGL
Sbjct: 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKA--PNKIQLGKELTRGL 58
Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
GAGG+P VG AA ES+ I+EA+ GADM+F+TAGMGGGTGTGAAPVIA IAK MG LTV
Sbjct: 59 GAGGDPEVGRKAAEESREEIKEALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGALTV 118
Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
+ T PF FEG++R QA+EG+ LR +VDTLIVIPNDKLL V
Sbjct: 119 AVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVV 162
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 242 bits (620), Expect = 4e-79
Identities = 101/169 (59%), Positives = 127/169 (75%), Gaps = 2/169 (1%)
Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
+N+AKIKVIGVGGGG+N VNRM+E + GVEF +NTDAQ +K + + ++ IG +
Sbjct: 13 QPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKA--DKKILIGKK 70
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
LTRGLGAGGNP +G AA ES+ I + + GADM+F+TAGMGGGTGTGAAPV+A IAK +
Sbjct: 71 LTRGLGAGGNPEIGRKAAEESRDEIRKLLEGADMVFITAGMGGGTGTGAAPVVAKIAKEL 130
Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
G LTV + T PF FEG +R +A+EG+ L+ VDTLIVIPNDKLL V
Sbjct: 131 GALTVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVV 179
>gnl|CDD|237273 PRK13018, PRK13018, cell division protein FtsZ; Provisional.
Length = 378
Score = 234 bits (600), Expect = 9e-76
Identities = 93/187 (49%), Positives = 123/187 (65%), Gaps = 2/187 (1%)
Query: 92 KEGLGESVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151
KE L +S E + + ++ KI V+G GG G+N +NR+ E + G E +NTDAQ
Sbjct: 6 KEALIDSEQEKEEKKASDDDFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQ 65
Query: 152 AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMG 211
+ + + ++ IG LTRGLGAGG+P VG AA ES+ I+E + GAD++FVTAGMG
Sbjct: 66 HLAMIKA--DKKILIGKSLTRGLGAGGDPEVGRKAAEESRDEIKEVLKGADLVFVTAGMG 123
Query: 212 GGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271
GGTGTGAAPV+A IAK G L VG+ T PF FEGR R +A+EG+ LR DT+IVI N
Sbjct: 124 GGTGTGAAPVVAEIAKEQGALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDN 183
Query: 272 DKLLTAV 278
++LL V
Sbjct: 184 NRLLDIV 190
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 225 bits (576), Expect = 1e-72
Identities = 106/170 (62%), Positives = 124/170 (72%), Gaps = 2/170 (1%)
Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
P + +A+IKVIGVGG G NAVNRMIE + GVEF +NTDAQA+K S + ++ IG
Sbjct: 6 PEESLKARIKVIGVGGAGGNAVNRMIEEGVEGVEFIAINTDAQALKSSKA--DRKILIGE 63
Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
+TRGLGAG NP VG AA ES IEEA+ GADM+FVTAGMGGGTGTGAAPV+A IAK
Sbjct: 64 SITRGLGAGANPEVGRAAAEESIEEIEEALKGADMVFVTAGMGGGTGTGAAPVVAEIAKE 123
Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
+G LTV + T+PF FEG R A+EG+ LR VDTLIVIPNDKLL
Sbjct: 124 LGALTVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGK 173
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 214 bits (547), Expect = 4e-70
Identities = 89/160 (55%), Positives = 105/160 (65%), Gaps = 3/160 (1%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLG 175
KIKV GVGGGG NAVN +E ++ NTDAQA+ + ++Q G TRGLG
Sbjct: 1 KIKVFGVGGGGPNAVNVDLEP--GVIDGVRANTDAQALNPESLAS-GKIQAGNNWTRGLG 57
Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
AG +P VG AA ES I E + GAD +F+TAGMGGGTGTGAAPVIA IAK GILTV
Sbjct: 58 AGADPEVGREAAEESLDEIREELEGADGVFITAGMGGGTGTGAAPVIAEIAKEYGILTVA 117
Query: 236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLL 275
+ T PF FEG R A+ G+ LR +VD+LIVI ND LL
Sbjct: 118 VVTKPFSFEGVVRPYNAELGLEELREHVDSLIVIDNDALL 157
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 181 bits (460), Expect = 1e-55
Identities = 79/164 (48%), Positives = 99/164 (60%), Gaps = 2/164 (1%)
Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
AKI VIG GG G N V++ +E G VNTDAQ + + ENR+ IG T+GL
Sbjct: 1 AKIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLL--GLEAENRVLIGQARTKGL 58
Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
GAG NP +G AA E + AI+ DM+F+TAG+GGGTGTG APV+A K +G LTV
Sbjct: 59 GAGANPELGAEAAEEVQEAIDNIPVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTLTV 118
Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
+ T+PF EG R + A EG L VD L+VIPN+KL
Sbjct: 119 AVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIG 162
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 143 bits (364), Expect = 2e-42
Identities = 77/196 (39%), Positives = 97/196 (49%), Gaps = 39/196 (19%)
Query: 117 IKVIGVGGGGSNAVNRMIE----------------------------SSMTGVEFWIVNT 148
I VIGVGG G+N N + E + G F ++T
Sbjct: 1 IIVIGVGGAGNNIGNALWELLCKEHGIDPDGMLFHADKINVFFEESGDGVYGPRFIAIDT 60
Query: 149 DAQAMKVSPVIPENRLQIGCELTRGL-GAGGNPSVGMN----AANESKVAIEEAI---SG 200
D Q + N+L IG LT+GL GAG NP+VG AA ES I + + G
Sbjct: 61 DPQVLNEIKAG--NKLFIGNNLTKGLEGAGNNPAVGYYTHKEAAEESLEEIRKELEKCDG 118
Query: 201 ADMIFVTAGMGGGTGTGAAPVIAGIAKSM-GILTVGIATVPFCFEGRRRAIQAQEGVANL 259
D F+TAG+GGGTG+GAAPVIA I K + G LTV + T PF EG R A G+ L
Sbjct: 119 LDGFFITAGLGGGTGSGAAPVIAEILKELYGALTVAVVTFPFTSEGVVRPYNAILGLKEL 178
Query: 260 RNNVDTLIVIPNDKLL 275
+ D++IVI ND LL
Sbjct: 179 IEHSDSVIVIDNDALL 194
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 89.3 bits (222), Expect = 1e-20
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 12/173 (6%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTG-----VEFWIVNTDAQAMKVSPVIP-ENRLQIGCE 169
++ +IGVG G V+ + V +NT +K IP E+R+ IG
Sbjct: 2 RVLIIGVGQAGGRIVDALNRHDKRSGFGYCVGALAINTAKNDLKGLKHIPAEDRILIGQS 61
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAI-----SGADMIFVTAGMGGGTGTGAAPVIAG 224
+G G G + +G A E + AI S AD I V AG+GGGTG+G APV+A
Sbjct: 62 EVKGHGVGADRELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLAK 121
Query: 225 IAKSM-GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLT 276
K + +P EG R + A + L D +I+ ND
Sbjct: 122 ELKERYEEPVYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKR 174
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 71.3 bits (175), Expect = 3e-14
Identities = 47/176 (26%), Positives = 71/176 (40%), Gaps = 26/176 (14%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFW----IVNTDAQAMKVSPVIP-ENRLQIGCEL 170
+I I +G G+ G +FW +V+T+ + + P IG +
Sbjct: 1 EIVTIQLGQAGNQ----------IGAKFWEQLVLVDTEPGVIDETLSGPYRLLFCIGQLI 50
Query: 171 TRGLGAGGNPSVGMNAANESKV-AIEEAI-------SGADMIFVTAGMGGGTGTGAAPVI 222
T G GAG N + G A E I + I F+T +GGGTG+G PV+
Sbjct: 51 THGGGAGNNWAFGHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVL 110
Query: 223 AGIAKSM--GILTVGIATVPFCFEGRR-RAIQAQEGVANLRNNVDTLIVIPNDKLL 275
A K L + + +P EG R + + L + D L+VI N+ L
Sbjct: 111 AERLKDEYPKRLKITFSILPGPDEGVIVRPYNSILTLHTLTEHSDCLVVIDNEALF 166
>gnl|CDD|145385 pfam02200, STE, STE like transcription factor.
Length = 110
Score = 33.5 bits (77), Expect = 0.027
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 22 ISGASLVKILDYRSDSWGACLRNVKDFPR--------FKCSAKAHNVSPNHSKDPFLDL 72
I+G +V+ L +R ++G ++N K F K A P K PFLD
Sbjct: 26 ITGTDIVRCLSFRFQAFGRPVKNKKKFEEGIFSDLRNLKPGIDATLEEP---KSPFLDF 81
>gnl|CDD|222394 pfam13809, Tubulin_2, Tubulin like. Many of the residues conserved
in Tubulin, pfam00091, are also highly conserved in this
family.
Length = 345
Score = 33.1 bits (76), Expect = 0.15
Identities = 35/163 (21%), Positives = 49/163 (30%), Gaps = 64/163 (39%)
Query: 119 VIGVGGGGSN---AVNRMIESSMTG------VEFWIVNTDAQAM------------KVSP 157
+IG+GG GS+ + RMI G V F V+TD M +
Sbjct: 2 IIGLGGTGSDVLRRLRRMIVERYGGLENPPIVSFLYVDTDKNEMGESDKNSKGLGISLKE 61
Query: 158 VIPENRLQIGCELTRGL--------------------------GAGGNPSVG----MNAA 187
L + L GAG +VG +
Sbjct: 62 SEKIYAFVTSENLAKILDRLELYPHIAEWFPPELVENITSIEAGAGQIRAVGRLAFFHNY 121
Query: 188 NESKVAIEEAI-------------SGADMIFVTAGMGGGTGTG 217
+ AIE A+ G +FV + GGTG+G
Sbjct: 122 QAIRQAIETALKRTFLLSEGQKVGEGGVNVFVVGSLSGGTGSG 164
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 32.4 bits (74), Expect = 0.25
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 175 GAGGNPSVG-MNAANESKVAIEEAISGA----DMI---FVTAGMGGGTGTG 217
GAG N +VG M ++ +I E++ D + F+ +GGGTG+G
Sbjct: 97 GAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSG 147
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that
catalyzes the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 32.1 bits (74), Expect = 0.26
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 186 AANESKVAIEEAIS--GADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIATVPFCF 243
A + I ++ GAD I + G GGT GAAP+ +G+ T
Sbjct: 222 VAGHGEGDIAAGVAAAGADFITI-DGAEGGT--GAAPLT--FIDHVGLPTE--------- 267
Query: 244 EGRRRAIQAQEGVANLRNNVDTLIV 268
G RA QA LR+ V +LI
Sbjct: 268 LGLARAHQALVK-NGLRDRV-SLIA 290
>gnl|CDD|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal
catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate
aldolase (Also known as 4-hydroxy-2-ketovalerate
aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA))
converts 4-hydroxy-2-oxopentanoate to acetaldehyde and
pyruvate, the penultimate step in the meta-cleavage
pathway for the degradation of phenols, cresols and
catechol. This family includes the Escherichia coli
MhpE aldolase, the Pseudomonas DmpG aldolase, and the
Burkholderia xenovorans BphI pyruvate aldolase. In
Pseudomonas, the DmpG aldolase tightly associates with a
dehydrogenase (DmpF ) and is inactive without it. HOA
has a canonical TIM-barrel fold with a C-terminal
extension that forms a funnel leading to the active
site. This family belongs to the DRE-TIM metallolyase
superfamily. DRE-TIM metallolyases include
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 263
Score = 31.7 bits (73), Expect = 0.32
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 183 GMNAANESKVAIEEAISGADMIFVT-AGMGGGTGTGAAPVIAGIAKSMGILT 233
G+ AN S A+E GA I + AG+G G G V+ + + MGI T
Sbjct: 197 GLAVAN-SLAAVEA---GATRIDGSLAGLGAGAGNTPLEVLVAVLERMGIET 244
>gnl|CDD|203423 pfam06305, DUF1049, Protein of unknown function (DUF1049). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 68
Score = 28.7 bits (65), Expect = 0.59
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 212 GGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTL 266
G ++ IA ++G L + ++PF RRR + ++ + L ++ L
Sbjct: 13 FAQGEFPLSLLLLIAFALGFLLGWLLSLPFYLRLRRRLRRLKKQLKKLEKELEEL 67
>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport
and metabolism].
Length = 485
Score = 30.7 bits (70), Expect = 0.80
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 192 VAIEEAISGADMIFVTAGMGGGTGTGAAPVI----AGIAKSMGILTV 234
+A A +GAD+I + G G GTGA+P+ AGI +G+
Sbjct: 319 IAAGVAKAGADVITI-DGADG--GTGASPLTSIDHAGIPWELGLAET 362
>gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase.
Members of this protein family are
4-hydroxy-2-oxovalerate aldolase, also called
4-hydroxy-2-ketovalerate aldolase and
2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of
the pathway for the meta-cleavage of catechol, produces
pyruvate and acetaldehyde. Acetaldehyde is then
converted by acetaldehyde dehydrogenase (acylating)
(DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are
tightly associated [Energy metabolism, Other].
Length = 333
Score = 30.4 bits (69), Expect = 1.0
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 183 GMNAANESKVAIEEAISGADMIFVT-AGMGGGTGTGAAPVIAGIAKSMGILT 233
+ AN S AIE GA I + G+G G G V + +G T
Sbjct: 200 SLAVAN-SIAAIEA---GATRIDASLRGLGAGAGNAPLEVFVAVLDRLGWNT 247
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 30.4 bits (68), Expect = 1.1
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 114 EAKIKVIGVGGGGS-NAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
+ I V GVG GG+ V + ++ ++ +V S V+ Q G L +
Sbjct: 174 KVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVE-----SAVLSGG--QPGPHLIQ 226
Query: 173 GLGAGGNP-SVGMNAANES-KVAIEEAISGADMIFVTAGMGGGTGTGAAPVIA 223
G+G+G P ++ + +E +V EEAI A ++ + G+ G +GAA A
Sbjct: 227 GIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAA 279
>gnl|CDD|240242 PTZ00046, PTZ00046, rifin; Provisional.
Length = 358
Score = 30.3 bits (69), Expect = 1.2
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 17/80 (21%)
Query: 171 TRGLGAGGNPSVGM----------NAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAP 220
GLG G PS G+ AA AI+ AI AG G G
Sbjct: 144 GCGLG-GVAPSWGLIGGIAVNAWKKAA--LAAAIKAAIKAG----AAAGEAAGIAAGKKA 196
Query: 221 VIAGIAKSMGILTVGIATVP 240
VI G+ GI T+G +
Sbjct: 197 VIEGLKSIFGISTLGGKDLK 216
>gnl|CDD|182152 PRK09932, PRK09932, glycerate kinase II; Provisional.
Length = 381
Score = 30.3 bits (68), Expect = 1.2
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 192 VAIEEAISGADMIFVTAG-MGGGTGTGAAPV-IAGIAKSMGILTVGIATV 239
V +E+A+ GA ++ G + T G AP+ +A +AK + +GIA V
Sbjct: 276 VNLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV 325
>gnl|CDD|237732 PRK14498, PRK14498, putative molybdopterin biosynthesis protein
MoeA/LysR substrate binding-domain-containing protein;
Provisional.
Length = 633
Score = 30.2 bits (69), Expect = 1.3
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTVGIATVP 240
A+ +A+ D++ + GGT GA V + + +G +L G+A P
Sbjct: 245 ALRKALKECDLVLL----SGGTSAGAGDVTYRVIEELGEVLVHGVAIKP 289
>gnl|CDD|128701 smart00424, STE, STE like transcription factors.
Length = 111
Score = 28.6 bits (64), Expect = 1.5
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 22 ISGASLVKILDYRSDSWGACLRNVKDFPR--------FKCSAKAHNVSPNHSKDPFLDL 72
I+G +V+ L YR ++G + N K F KC A P K PFLD
Sbjct: 27 ITGTDIVRCLVYRFQAFGRPVVNRKKFEEGIFSDLRNLKCGTDATLEEP---KSPFLDF 82
>gnl|CDD|183086 PRK11320, prpB, 2-methylisocitrate lyase; Provisional.
Length = 292
Score = 29.5 bits (67), Expect = 1.9
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 183 GMNAANESKVAIEEAISGADMIFVTA 208
G++AA E A EA GADMIF A
Sbjct: 164 GLDAAIERAQAYVEA--GADMIFPEA 187
>gnl|CDD|183857 PRK13057, PRK13057, putative lipid kinase; Reviewed.
Length = 287
Score = 29.5 bits (67), Expect = 2.0
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 194 IEEAISGADMIFVTAGMGGGTGT--GAAPVIAGIAKSMGILTVGIA 237
IE G D++ V GGG GT AAP + +GIL +G A
Sbjct: 44 IEAYADGVDLVIV----GGGDGTLNAAAPALVETGLPLGILPLGTA 85
>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like,
2-hydroxycarboxylate dehydrogenase family. Members of
this family include ubiquitous enzymes like L-lactate
dehydrogenases (LDH), L-2-hydroxyisocaproate
dehydrogenases, and some malate dehydrogenases (MDH).
LDH catalyzes the last step of glycolysis in which
pyruvate is converted to L-lactate. MDH is one of the
key enzymes in the citric acid cycle, facilitating both
the conversion of malate to oxaloacetate and
replenishing levels of oxalacetate by reductive
carboxylation of pyruvate. The LDH/MDH-like proteins are
part of the NAD(P)-binding Rossmann fold superfamily,
which includes a wide variety of protein families
including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 263
Score = 29.2 bits (66), Expect = 2.2
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 24/104 (23%)
Query: 117 IKVIGVGGG-GSNAVNRMIE-SSMTGVEFWIVNTDAQAMKVSPVIPENRLQ-IGCELTRG 173
I VIG GG G + + S + +E + + I E +L+ + +L
Sbjct: 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYD-----------IDEEKLKGVAMDLQDA 49
Query: 174 LGAGGNPSV--GMNAANESKVAIEEAISGADMIFVTAGMGGGTG 215
+ + V + EA AD++ +TAG+G G
Sbjct: 50 VEPLADIKVSITDDP--------YEAFKDADVVIITAGVGRKPG 85
>gnl|CDD|226648 COG4185, COG4185, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 187
Score = 28.6 bits (64), Expect = 2.5
Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 119 VIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPE 161
V G G G + V + + VN D A ++SP P
Sbjct: 7 VAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQISPDNPT 48
>gnl|CDD|181282 PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic
acid aldolase,; Validated.
Length = 337
Score = 29.0 bits (66), Expect = 2.7
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 183 GMNAANESKVAIEEAISGADMIFVT-AGMGGGTGTGAAPVIAGIAKSMGILT 233
G+ AN S A+E GA I + AG+G G G V+ + MG T
Sbjct: 201 GLGVAN-SLAAVEA---GATRIDGSLAGLGAGAGNTPLEVLVAVLDRMGWET 248
>gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase.
Length = 473
Score = 28.9 bits (65), Expect = 3.5
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 14/60 (23%)
Query: 194 IEEAISGADMIFV-------TAGMGGGTGT------GAAPVIAGIAKSMGILTVGIATVP 240
+E+ ++ AD++FV T G+G G AA +IA ++KS I+ V +TVP
Sbjct: 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIV-VEKSTVP 130
>gnl|CDD|214856 smart00852, MoCF_biosynth, Probable molybdopterin binding domain.
This domain is found a variety of proteins involved in
biosynthesis of molybdopterin cofactor. The domain is
presumed to bind molybdopterin. The structure of this
domain is known, and it forms an alpha/beta structure.
In the known structure of Gephyrin this domain mediates
trimerisation.
Length = 138
Score = 27.6 bits (62), Expect = 4.1
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
Query: 193 AIEEAISGADMIFVTAGMGGGTGTGA 218
A+ EA++ AD++ T GGTG G
Sbjct: 52 ALREALAEADVVITT----GGTGPGP 73
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 28.4 bits (64), Expect = 4.9
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 175 GAGGNPSVG-MNAANESKVAIEEAISGA----DMI---FVTAGMGGGTGTG 217
GAG N +VG ++ +I E I A D + F+ +GGGTG+G
Sbjct: 65 GAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSG 115
>gnl|CDD|183473 PRK12361, PRK12361, hypothetical protein; Provisional.
Length = 547
Score = 27.7 bits (62), Expect = 7.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 195 EEAI-SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA 237
++A +GAD++ + G G GT T A + ++GI+ +G A
Sbjct: 291 KQARKAGADIV-IACG-GDGTVTEVASELVNTDITLGIIPLGTA 332
>gnl|CDD|183966 PRK13309, ureC, urease subunit alpha; Reviewed.
Length = 572
Score = 27.5 bits (61), Expect = 8.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 173 GLGAGGNPSVGMNAANESKV--AIEEAISGADMIFVTAGM 210
G+G GNPS M+ + V +AISG +I AG+
Sbjct: 98 GIGKSGNPST-MDGVTQGMVVGVSTDAISGEHLILTAAGI 136
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 27.6 bits (62), Expect = 8.9
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 33/119 (27%)
Query: 117 IKVIGVGGGGSNAVNRMIESSMTGVEFW----IVNTDAQAM------KVSPVIPENRLQI 166
I I +G G+ G +FW +V+ D + + ++S + N+L
Sbjct: 2 IISIQIGQCGN----------QIGNKFWELLILVDLDPRVINEILQGQLSKLFDPNQLVN 51
Query: 167 GCELTRGLGAGGNPSVGMN-AANESKVAIEEAI-------SGADMIFVTAGMGGGTGTG 217
G E G+G N + G E I + I +T +GGGTG+G
Sbjct: 52 GKE-----GSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSG 105
>gnl|CDD|226065 COG3535, COG3535, Uncharacterized conserved protein [Function
unknown].
Length = 357
Score = 27.3 bits (61), Expect = 10.0
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 173 GLGAGGNPSVG-------MNAANESKVAIEEAISGADMIFVTAGMG 211
G G GG+P +G M KV + I+ D + MG
Sbjct: 21 GTGGGGDPYIGKLMALRAMKEGGPIKVLDVDEIAEDDFVATVGMMG 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,703,236
Number of extensions: 1299840
Number of successful extensions: 1601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1583
Number of HSP's successfully gapped: 85
Length of query: 279
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 183
Effective length of database: 6,679,618
Effective search space: 1222370094
Effective search space used: 1222370094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (25.9 bits)