RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 044090
(279 letters)
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling
protein; HET: CIT; 1.86A {Mycobacterium tuberculosis}
SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A*
2q1x_A*
Length = 382
Score = 306 bits (785), Expect = e-103
Identities = 100/171 (58%), Positives = 126/171 (73%), Gaps = 2/171 (1%)
Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
P +N A IKV+G+GGGG NAVNRMIE + GVEF +NTDAQA+ +S + +L +G
Sbjct: 6 PPHNYLAVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGR 63
Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
+ TRGLGAG +P VG AA ++K IEE + GADM+FVTAG GGGTGTG APV+A IA+
Sbjct: 64 DSTRGLGAGADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARK 123
Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
+G LTVG+ T PF FEG+RR+ QA+ G+A LR + DTLIVIPND+LL
Sbjct: 124 LGALTVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGD 174
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding,
septation, cytoplasm, B.subtilis, cell cycle; HET: CIT;
1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A*
2rhl_A* 2rho_A*
Length = 382
Score = 304 bits (782), Expect = e-103
Identities = 110/170 (64%), Positives = 132/170 (77%), Gaps = 2/170 (1%)
Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
N + A IKVIGVGGGG+NAVNRMIE+ + GVE+ VNTDAQA+ +S E ++QIG +
Sbjct: 7 NIDGLASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKA--EVKMQIGAK 64
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM 229
LTRGLGAG NP VG AA ESK IEEA+ GADM+FVTAGMGGGTGTGAAPVIA IAK +
Sbjct: 65 LTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDL 124
Query: 230 GILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
G LTVG+ T PF FEGR+R +QA G++ ++ VDTLIVIPND++L V
Sbjct: 125 GALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVD 174
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding,
cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A
{Staphylococcus aureus}
Length = 396
Score = 304 bits (780), Expect = e-103
Identities = 106/171 (61%), Positives = 128/171 (74%), Gaps = 2/171 (1%)
Query: 109 PNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGC 168
N+ A +KVIGVGGGG+NAVNRMI+ M VEF +NTD QA+ +S E+++QIG
Sbjct: 12 QGFNHLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSKA--ESKIQIGE 69
Query: 169 ELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKS 228
+LTRGLGAG NP +G AA ES+ IE+AI GADM+FVT+GMGGGTGTGAAPV+A IAK
Sbjct: 70 KLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVTSGMGGGTGTGAAPVVAKIAKE 129
Query: 229 MGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
MG LTVG+ T PF FEGR+R QA GV ++ VDTLIVIPND+LL V
Sbjct: 130 MGALTVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVD 180
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding,
multigene family, septation, tubulin, filament, Z-ring,
GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga
maritima} SCOP: c.32.1.1 d.79.2.1
Length = 353
Score = 300 bits (771), Expect = e-102
Identities = 96/180 (53%), Positives = 120/180 (66%), Gaps = 2/180 (1%)
Query: 100 SESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVI 159
E +++ N KIKVIGVGG G+NA+NRMIE + GVEF VNTD Q ++ S
Sbjct: 7 VEKKKENRNIPQANNLKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNA- 65
Query: 160 PENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAA 219
+ ++QIG +TRGLGAGG P +G AA ES+ I E + M+F+TAG GGGTGTGA+
Sbjct: 66 -DVKIQIGENITRGLGAGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGAS 124
Query: 220 PVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
PVIA IAK MGILTV I T PF FEG R +A EG+ LR +VDTLI I N+KL+ +
Sbjct: 125 PVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELP 184
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin
homolog, GTPase, septation, cell cycle, GTP-binding;
HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A*
1fsz_A* 1w5e_A*
Length = 364
Score = 298 bits (766), Expect = e-101
Identities = 81/187 (43%), Positives = 117/187 (62%), Gaps = 2/187 (1%)
Query: 92 KEGLGESVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQ 151
+E +S ++ +AKI V+G GG G+N + R+ + G + +NTDAQ
Sbjct: 15 EEFNELELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQ 74
Query: 152 AMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMG 211
+ + + ++ IG +LTRGLGAGGNP +G AA ES I+ AI +DM+F+T G+G
Sbjct: 75 QLIRTKA--DKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLG 132
Query: 212 GGTGTGAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPN 271
GGTGTG+APV+A I+K +G LTV + T+PF EG+ R A EG+ L+ + DTL+VIPN
Sbjct: 133 GGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPN 192
Query: 272 DKLLTAV 278
+KL V
Sbjct: 193 EKLFEIV 199
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell
cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Length = 338
Score = 297 bits (763), Expect = e-101
Identities = 91/172 (52%), Positives = 116/172 (67%), Gaps = 2/172 (1%)
Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
+ N KIKVIGVGGGGSNAVNRM E + GVE + +NTD Q + V N++QIG
Sbjct: 1 MEEFVNPCKIKVIGVGGGGSNAVNRMYEDGIEGVELYAINTDVQHLSTLKV--PNKIQIG 58
Query: 168 CELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
++TRGLGAG P VG AA E I+E + DM+F++AG+GGGTGTGAAPVIA AK
Sbjct: 59 EKVTRGLGAGAKPEVGEEAALEDIDKIKEILRDTDMVFISAGLGGGTGTGAAPVIAKTAK 118
Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
MGILTV +AT+PF FEG R+ +A +G+ L+ + D IVI NDK+ +
Sbjct: 119 EMGILTVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSN 170
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division
inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas
aeruginosa} SCOP: c.32.1.1 d.79.2.1
Length = 320
Score = 291 bits (748), Expect = 5e-99
Identities = 98/171 (57%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
V N A IKVIGVGGGG NAVN M ++++ GVEF NTDAQA+K LQ+G
Sbjct: 5 VDNIAQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLG 62
Query: 168 CELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
+T+GLGAG NP VG AA E + I E + GADM+F+T GMGGGTGTGAAP+IA +AK
Sbjct: 63 PGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK 122
Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
MGILTV + T PF FEGR+R A EG+ L +VD+LI IPN+KLLT +
Sbjct: 123 EMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 173
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein,
tubulin homolog, nucleotide-binding, GTPase, septation,
cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa}
SCOP: c.32.1.1 d.79.2.1
Length = 394
Score = 293 bits (753), Expect = 1e-98
Identities = 98/171 (57%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Query: 108 VPNNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIG 167
V N A IKVIGVGGGG NAVN M ++++ GVEF NTDAQA+K LQ+G
Sbjct: 5 VDNIAQTAVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLG 62
Query: 168 CELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
+T+GLGAG NP VG AA E + I E + GADM+F+T GMGGGTGTGAAP+IA +AK
Sbjct: 63 PGVTKGLGAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAK 122
Query: 228 SMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
MGILTV + T PF FEGR+R A EG+ L +VD+LI IPN+KLLT +
Sbjct: 123 EMGILTVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 173
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 197 bits (502), Expect = 3e-61
Identities = 44/185 (23%), Positives = 72/185 (38%), Gaps = 17/185 (9%)
Query: 110 NNNNEAKIKVIGVGGGGSN------AVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENR 163
N K +G+G GG I+++ +VNT++Q + +N
Sbjct: 11 QGNISLKFGFLGLGMGGCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEI--KNT 68
Query: 164 LQIGCELTRGL--GAGGNPSVGMNAANESKVAIEEAIS----GADMIFVTAGMGGGTGTG 217
+ G GA NP VG A + + I EA+ D I++T G+GGGTGTG
Sbjct: 69 GNVRKIQLEGYEQGAARNPQVGEEAFVKHETKIFEAVKQEFEDRDFIWITCGLGGGTGTG 128
Query: 218 AAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNN---VDTLIVIPNDKL 274
A + + T+P E + A + ++ N ++++I N KL
Sbjct: 129 ALLKAIEMLYEHDYNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKL 188
Query: 275 LTAVS 279
Sbjct: 189 YRKFE 193
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 151 bits (383), Expect = 7e-44
Identities = 32/172 (18%), Positives = 58/172 (33%), Gaps = 9/172 (5%)
Query: 113 NEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTR 172
+ KI +G GG N V+ ++ +NT + + + I
Sbjct: 3 MKNKIVFAPIGQGGGNIVDTLLGIC-GDYNALFINTSKKDLDSLKHAK-HTYHIPYAEGC 60
Query: 173 GLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSM--G 230
G + I E S D++ A M GG G+G P I G+AK M
Sbjct: 61 GKERKKAVGYAQTYYKQIIAQIMEKFSSCDIVIFVATMAGGAGSGITPPILGLAKQMYPN 120
Query: 231 ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVD-----TLIVIPNDKLLTA 277
+ +P E + A ++ + + ++ ++ N+K
Sbjct: 121 KHFGFVGVLPKATEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNKREKE 172
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 75.7 bits (185), Expect = 9e-16
Identities = 31/212 (14%), Positives = 59/212 (27%), Gaps = 42/212 (19%)
Query: 101 ESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIE----SSMTGVEFWIVNTDAQ-AMKV 155
E + ++ N+ + VIG G G+ + + T VN M +
Sbjct: 29 EHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHL 88
Query: 156 SPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAI----------------- 198
+I E+R+ GA PSV + +
Sbjct: 89 QNIIKEDRIHFD----GLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEG 144
Query: 199 -SGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG--ILTVGIATVPFCFEGRRRAIQA--- 252
D + G GGG GTG ++ + + + ++P
Sbjct: 145 EVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLS 204
Query: 253 ----------QEGVANLRNNVDTLIVIPNDKL 274
+ + + +IV N ++
Sbjct: 205 EIDEFMREQDRLFGNSDIKPLANVIVNDNTQM 236
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 59.5 bits (143), Expect = 2e-10
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 9/159 (5%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLG 175
K+ +I GG G N ++++ + D + V + + G
Sbjct: 4 KVCLIFAGGTGMNVATKLVD--LGEAVHCFDTCDKNVVDVHRSVNVTLTK------GTRG 55
Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
AGGN V + A+ + I AD V +GGG+G+ P+I G V
Sbjct: 56 AGGNRKVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVS 115
Query: 236 IATVPF-CFEGRRRAIQAQEGVANLRNNVDTLIVIPNDK 273
+ I + + + N IV+
Sbjct: 116 FVVGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVP 154
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.002
Identities = 53/313 (16%), Positives = 91/313 (29%), Gaps = 120/313 (38%)
Query: 1 MATCISTCFSPSH--TCISKETQISGASLVKILDYRSDSWGACLRNVKDFPR--FKCSAK 56
+ T F+P + + T S + + +DSW + +V+ F +
Sbjct: 250 VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 57 AHNVSPNHSKDPFLDLHPEV-------------SMLS--G----------DGTN------ 85
+ PN S L P + MLS + TN
Sbjct: 310 CYEAYPNTS------LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 86 --------------VLFGSMKEGLGESVSESLRQSSVPNNNNEAKI-----KVIGVGGGG 126
V+ G + L ++ +LR++ P+ ++++I K+
Sbjct: 364 KQVEISLVNGAKNLVVSGP-PQSL-YGLNLTLRKAKAPSGLDQSRIPFSERKLKF----- 416
Query: 127 SNAVNRMIE------SS-MTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGN 179
NR + S + ++N D VS +QI T
Sbjct: 417 ---SNRFLPVASPFHSHLLVPASD-LINKDLVKNNVS--FNAKDIQIPVYDTFD------ 464
Query: 180 PSVGMNAANESKVAIEEAISGADMIFV-----------------------TAGMGGGT-- 214
G + S +I E I D I +G+G T
Sbjct: 465 ---GSDLRVLSG-SISERI--VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Query: 215 ---GTGAAPVIAG 224
GTG ++AG
Sbjct: 519 NKDGTGVRVIVAG 531
Score = 35.8 bits (82), Expect = 0.017
Identities = 27/130 (20%), Positives = 39/130 (30%), Gaps = 53/130 (40%)
Query: 172 RGL--------GAGGNPSVGMNAANESKVAI---EEAISGADMIFVTAGMGGGTGTGAAP 220
RG+ G + GM A N +VA +EA+
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-------------------- 1828
Query: 221 VIAGIAKSMGILTVGIA--------TVPFCFEGRRRAIQAQEGVAN---LRNNVDTLIVI 269
V+ + K G L V I V G RA+ V N L+ I
Sbjct: 1829 VVERVGKRTGWL-VEIVNYNVENQQYV--A-AGDLRALDTVTNVLNFIKLQK-------I 1877
Query: 270 PNDKLLTAVS 279
+L ++S
Sbjct: 1878 DIIELQKSLS 1887
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.5 bits (86), Expect = 0.004
Identities = 43/269 (15%), Positives = 77/269 (28%), Gaps = 94/269 (34%)
Query: 26 SLVKILDYRSDSWGACLRNVKDFPRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDGTN 85
+ V D C ++V+D P+ ++ D + VS GT
Sbjct: 28 AFVDNFD--------C-KDVQDMPK--------SILSKEEIDHIIMSKDAVS-----GTL 65
Query: 86 VLFGSM----KEGLGESVSESLRQSSVPNNNNE---AKIKVIGVGGGGSNAVNRMIESSM 138
LF ++ +E + + V E LR N + + IK + SM
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRI------NYKFLMSPIK------------TEQRQPSM 107
Query: 139 TGVEFWIVNTDAQAMKVSPVIPEN--RLQIGCELTRGLGAGGNPSVGMNAANESKVAIEE 196
+ I D N RLQ +L + L + V I+
Sbjct: 108 MTRMY-IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---------LELRPAKNVLID- 156
Query: 197 AISGADMIFVTAGMGGGTGTG----AAPVIA--GIAKSM--GI--LTVGIATVP------ 240
G+ G+G A V + M I L + P
Sbjct: 157 ------------GVL---GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 241 ---FCFEGRRRAIQAQEGVANLRNNVDTL 266
++ + +N++ + ++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylas; structural
genomics, APC62130.1, methyltransferase, PSI-2, P
structure initiative; 2.00A {Bacteroides fragilis} PDB:
3fq6_A
Length = 115
Score = 29.7 bits (68), Expect = 0.37
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 19/59 (32%)
Query: 216 TGAAPVIAGIAKSMGILTVGIATVPFCFEG-------RRRAIQAQEGVANLRNNVDTLI 267
+ A + + S G+ FCFEG R +++ L + T++
Sbjct: 1 SNATAFVPALVAS------GLPNEKFCFEGFLPQKKGRMTKLKS------LVDEHRTMV 47
>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein
structure initiative, MCSG glucosidase, NAD-dependent;
HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5
d.162.1.2
Length = 472
Score = 30.9 bits (69), Expect = 0.54
Identities = 14/107 (13%), Positives = 29/107 (27%), Gaps = 18/107 (16%)
Query: 110 NNNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPV----IPENRLQ 165
+N + I + GGGS ++ + + + + + R
Sbjct: 22 SNMKKKSFS-IVIAGGGSTFTPGIVLMLLD---------HLEEFPIRKLKLYDNDKERQD 71
Query: 166 IGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGG 212
P + A + EEA + D + +G
Sbjct: 72 RIAGACDVFIREKAPDIEFAATTD----PEEAFTDVDFVMAHIRVGK 114
>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+,
maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 480
Score = 30.2 bits (67), Expect = 0.72
Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 116 KIKVIGVGGGGSNAVNRMIES------SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
KI +IG GS + + S ++G +++ D E RL
Sbjct: 5 KIGIIG---AGSAVFSLRLVSDLCKTPGLSGSTVTLMDID-----------EERLDAILT 50
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGG 212
+ + VG + E + +++ I AD + TA +GG
Sbjct: 51 IAKKYVE----EVGADLKFEKTMNLDDVIIDADFVINTAMVGG 89
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.76
Identities = 7/42 (16%), Positives = 16/42 (38%), Gaps = 13/42 (30%)
Query: 149 DAQAMK-VSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANE 189
+ QA+K + + L++ P++ + A E
Sbjct: 18 EKQALKKL-----QASLKL-------YADDSAPALAIKATME 47
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
substrate channeling; HET: NAD; 1.70A {Pseudomonas SP}
SCOP: a.5.7.1 c.1.10.5
Length = 345
Score = 29.6 bits (67), Expect = 1.0
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 183 GMNAANESKVAIEEAISGADMIFVT-AGMGGGTGTGAAPVIAGIAKSMGILT 233
+ AN S VA+EE G D + + AGMG G G V +A+ +G
Sbjct: 206 SLGVAN-SIVAVEE---GCDRVDASLAGMGAGAGNAPLEVFIAVAERLGWNH 253
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initi midwest center for structural
genomics; 2.31A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.2
Length = 450
Score = 29.0 bits (64), Expect = 1.7
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 116 KIKVIGVGGGGSNAVNRMIES------SMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
KI IG GGS+ ++E + E W+V+ + +L+I
Sbjct: 9 KIATIG---GGSSYTPELVEGLIKRYHELPVGELWLVDIPEG---------KEKLEIVGA 56
Query: 170 LTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGT 216
L + + + ++ + A+ GAD + +GG
Sbjct: 57 LAKRMVEKAGVPIEIHLTLD----RRRALDGADFVTTQFRVGGLEAR 99
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis
MOEA protein; MOEA molybdopterin, MOCF biosynthesis;
2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1
c.57.1.2
Length = 402
Score = 28.3 bits (64), Expect = 2.9
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 193 AIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG-ILTVGIA 237
IE+A++ D++ ++ GG G + A + + +G + GIA
Sbjct: 239 LIEKAVNVGDVVVIS----GGASGGTKDLTASVIEELGEVKVHGIA 280
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 28.3 bits (62), Expect = 2.9
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLG 175
K+ V G G G V + D +A + + + + L + G
Sbjct: 4 KVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFAD-EAERWTKALGADELTVIVNEKDGTQ 62
Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVT 207
+ + E AISGAD++ +T
Sbjct: 63 TEVKSRPKVITKD-----PEIAISGADVVILT 89
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 27.9 bits (63), Expect = 3.1
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 184 MNAANESKVAIEEAISGADMIFVTAGM--GGGTGTGAAPVIAGIAKSMGILTVGIAT 238
MN K+A + A+ +V A G G+G+ I + + +A
Sbjct: 1 MNQLEMKKLAAQAALQ-----YVKADRIVGVGSGSTVNCFIEALGTIKDKIQGAVAA 52
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase;
post-translational modification, multiple
methyltransferase; HET: SAH 4MM; 1.75A {Thermus
thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A
2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K
2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K
2xtg_K ...
Length = 146
Score = 26.6 bits (58), Expect = 5.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 217 GAAPVIAGIAKSMGILTVG 235
AA +IAG A+SMG+ VG
Sbjct: 121 AAARMIAGSARSMGVEVVG 139
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 27.2 bits (61), Expect = 6.3
Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 33/98 (33%)
Query: 119 VIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVI-----PENRLQIGCELTRG 173
++GVGG G AV + M + VI E +L
Sbjct: 192 IVGVGGLGHIAVQL-----------------LKVMTPATVIALDVKEEKL-----KLAER 229
Query: 174 LGAGGNPSVGMNAANESKVAIEEAI--SGADMIFVTAG 209
LGA ++A + + E G ++ G
Sbjct: 230 LGA----DHVVDARRDPVKQVMELTRGRGVNVAMDFVG 263
>3l8u_A SMU.1707C, putative rRNA methylase; methyltransferase, knotted
protein; 2.00A {Streptococcus mutans}
Length = 182
Score = 26.8 bits (60), Expect = 6.8
Identities = 12/85 (14%), Positives = 23/85 (27%), Gaps = 20/85 (23%)
Query: 31 LDYRS-------DSWGACLRNVKDFPRFKCSAKAHNVSPNHSKDPFLDLHPEVSMLSGDG 83
LDY DS + + A+ + + + +
Sbjct: 65 LDYWDKLDVHFYDSLNDFMNICSG-KLHLITKFANKT------------YSDENYDDSEH 111
Query: 84 TNVLFGSMKEGLGESVSESLRQSSV 108
LFG +GL E + ++
Sbjct: 112 HYFLFGREDKGLPEEFMRQHSEKAL 136
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway,
isoprene biosynthesis, metal- NADP, oxidoreductase; HET:
NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A*
Length = 376
Score = 26.7 bits (60), Expect = 8.6
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 169 ELTRGLGAGGNPSVGMNAANESKVA 193
L + + NAA+E V
Sbjct: 294 FLLKEIKDSYALRTAFNAADEVAVE 318
>3kwp_A Predicted methyltransferase; putative methyltransferase, MCSG, STRU
genomics, PSI-2, protein structure initiative; 2.29A
{Lactobacillus brevis atcc 367}
Length = 296
Score = 26.8 bits (60), Expect = 8.7
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 20/59 (33%)
Query: 217 GAAPVIAGIAKSMGILTVGIATVPFCFEG--------RRRAIQAQEGVANLRNNVDTLI 267
GA + + S G+A PF F G R+ I L +TLI
Sbjct: 125 GANAGLTALIAS------GLAPQPFYFYGFLDRKPKDRKAEIAG------LAQRPETLI 171
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 224
Score = 26.3 bits (57), Expect = 9.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 217 GAAPVIAGIAKSMGILTVG 235
A +IAG A +MGI
Sbjct: 194 SAMRIIAGTAANMGIDIDP 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,147,974
Number of extensions: 256539
Number of successful extensions: 769
Number of sequences better than 10.0: 1
Number of HSP's gapped: 751
Number of HSP's successfully gapped: 59
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.2 bits)