RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 044090
(279 letters)
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 189 bits (482), Expect = 6e-61
Identities = 96/164 (58%), Positives = 117/164 (71%), Gaps = 2/164 (1%)
Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
A IKVIGVGGGG NAVN M ++++ GVEF NTDAQA+K LQ+G +T+GL
Sbjct: 2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAA--RTVLQLGPGVTKGL 59
Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
GAG NP VG AA E + I E + GADM+F+T GMGGGTGTGAAP+IA +AK MGILTV
Sbjct: 60 GAGANPEVGRQAALEDRERISEVLEGADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTV 119
Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
+ T PF FEGR+R A EG+ L +VD+LI IPN+KLLT +
Sbjct: 120 AVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTIL 163
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 198
Score = 175 bits (446), Expect = 1e-55
Identities = 98/164 (59%), Positives = 123/164 (75%), Gaps = 2/164 (1%)
Query: 115 AKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGL 174
A IKV+G+GGGG NAVNRMIE + GVEF +NTDAQA+ +S + +L +G + TRGL
Sbjct: 2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDA--DVKLDVGRDSTRGL 59
Query: 175 GAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTV 234
GAG +P VG AA ++K IEE + GADM+FVTAG GGGTGTG APV+A IA+ +G LTV
Sbjct: 60 GAGADPEVGRKAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTV 119
Query: 235 GIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
G+ T PF FEG+RR+ QA+ G+A LR + DTLIVIPND+LL
Sbjct: 120 GVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMG 163
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 173 bits (441), Expect = 1e-54
Identities = 79/168 (47%), Positives = 111/168 (66%), Gaps = 2/168 (1%)
Query: 111 NNNEAKIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCEL 170
+AKI V+G GG G+N + R+ + G + +NTDAQ + + + ++ IG +L
Sbjct: 12 QQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKA--DKKILIGKKL 69
Query: 171 TRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMG 230
TRGLGAGGNP +G AA ES I+ AI +DM+F+T G+GGGTGTG+APV+A I+K +G
Sbjct: 70 TRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIG 129
Query: 231 ILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAV 278
LTV + T+PF EG+ R A EG+ L+ + DTL+VIPN+KL V
Sbjct: 130 ALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIV 177
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 162 bits (411), Expect = 2e-50
Identities = 94/164 (57%), Positives = 115/164 (70%), Gaps = 2/164 (1%)
Query: 116 KIKVIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLG 175
KIKVIGVGG G+NA+NRMIE + GVEF VNTD Q ++ S + ++QIG +TRGLG
Sbjct: 2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNA--DVKIQIGENITRGLG 59
Query: 176 AGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVG 235
AGG P +G AA ES+ I E + M+F+TAG GGGTGTGA+PVIA IAK MGILTV
Sbjct: 60 AGGRPEIGEQAALESEEKIREVLQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVA 119
Query: 236 IATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLLTAVS 279
I T PF FEG R +A EG+ LR +VDTLI I N+KL+ +
Sbjct: 120 IVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELP 163
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 33.2 bits (75), Expect = 0.031
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 9/111 (8%)
Query: 119 VIGVGGGGSNAVNRMIESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGG 178
V GVG GG+ + + G IV + SPV+ + Q G +G+GAG
Sbjct: 164 VAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAK---SPVL--SGGQPGKHAIQGIGAGF 218
Query: 179 NPSVGMNAANESKVAI--EEAISGADMIFVTAGMGGGTGTGAAPVIAGIAK 227
P + + + + + EEA A + G+ G +GA +A K
Sbjct: 219 VPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGAN--VAAALK 267
>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 133
Score = 30.4 bits (68), Expect = 0.11
Identities = 20/119 (16%), Positives = 29/119 (24%), Gaps = 7/119 (5%)
Query: 157 PVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGT 216
P L+ G + L A + G + A G +I V
Sbjct: 3 PTFNPAALKAGEVIGSALPASPGAAAGK-VYFTADEAKAAHEKGERVILVRLETSPEDIE 61
Query: 217 GAAPVIAGIAKSMGILTVGIATVPFCFEGRRRAIQAQEGVANLRNNVDTLIVIPNDKLL 275
G GI G +T A V R G ++ N +
Sbjct: 62 G-MHAAEGILTVRGGMTSHAAVV-----ARGMGTCCVSGCGEIKINEEAKTFELGGHTF 114
>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus
jannaschii [TaxId: 2190]}
Length = 100
Score = 26.7 bits (59), Expect = 1.5
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 106 SSVPNNNNEAKIKVIGVGGGGSNAVNRMIESSMT--GVEFWIVNTDAQAMKVSPVIPENR 163
++ N A I + G G G + I ++ V +++ + +S V+ E
Sbjct: 7 KAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEED 66
Query: 164 LQ 165
+
Sbjct: 67 VD 68
>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide
synthetase PurK (AIRC), N-domain {Escherichia coli
[TaxId: 562]}
Length = 78
Score = 25.9 bits (57), Expect = 1.9
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Query: 117 IKVIGVGGGGSNAVNRM--IESSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCE 169
+K + V G G RM G+ W V DA+ +P + I E
Sbjct: 1 MKQVCVLGNGQLG--RMLRQAGEPLGIAVWPVGLDAE----PAAVPFQQSVITAE 49
>gi|226355464|ref|YP_002785204.1|(72-143:144) putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115]
gi|226317454|gb|ACO45450.1| putative 50S ribosomal
protein L11 [Deinococcus deserti VCD115] E=8e-31
s/c=1.88 id=89% cov=101%
Length = 72
Score = 25.0 bits (55), Expect = 3.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 217 GAAPVIAGIAKSMGILTVG 235
AA +AG A+SMG+ G
Sbjct: 51 AAANTVAGTARSMGVTIEG 69
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 135
Score = 25.8 bits (56), Expect = 3.6
Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 10/131 (7%)
Query: 76 VSMLSGDGTNVLFGSMKEGLGESVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVNRMIE 135
V+ + D T L + L ES ++++ IKV + G + +
Sbjct: 3 VTAVIFDKTGTLTKGKPDTLKESAKPAVQEL------KRMGIKVGMITGDNWRSAEAISR 56
Query: 136 SSMTGVEFWIVNTDAQAMKVSPVIPENRLQIGCELTRGLGAGGNPSVGMNAANESKVAIE 195
+ V ++ +V + + + + A +G+ + S VA+E
Sbjct: 57 ELNLDLVIAEVLPHQKSEEVKKLQAKEVVAFVGDGINDAPALAQADLGIAVGSGSDVAVE 116
Query: 196 EAISGADMIFV 206
D++ +
Sbjct: 117 ----SGDIVLI 123
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain
{Thermotoga maritima [TaxId: 2336]}
Length = 70
Score = 24.6 bits (54), Expect = 4.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 217 GAAPVIAGIAKSMGILTV 234
A +I G AKSMGI V
Sbjct: 53 AAMKIIEGTAKSMGIEVV 70
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain
{Thermus thermophilus [TaxId: 274]}
Length = 67
Score = 24.2 bits (53), Expect = 5.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 217 GAAPVIAGIAKSMGI 231
AA +IAG A+SMG+
Sbjct: 52 AAARMIAGSARSMGV 66
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 74
Score = 24.5 bits (54), Expect = 5.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 217 GAAPVIAGIAKSMGI 231
A +I G A+SMGI
Sbjct: 57 AAMRMIEGTARSMGI 71
>d1xa1a_ e.3.1.1 (A:) Regulatory protein BlaR1 {Staphylococcus
aureus [TaxId: 1280]}
Length = 246
Score = 25.9 bits (56), Expect = 5.9
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 210 MGGGTGTGAAPVIAGIAKSMGIL 232
G +G A + I K MG+L
Sbjct: 223 DGKPSGKNAELISEKILKEMGVL 245
>d1wdea_ c.90.1.1 (A:) Diphthine synthase, DphB {Aeropyrum pernix
[TaxId: 56636]}
Length = 289
Score = 25.5 bits (55), Expect = 7.0
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 10/90 (11%)
Query: 178 GNPSVGMNAANESKVAIEEAISGADMIFVTAGMGGGTGTGAAPVIAGIAKSMGILTVGIA 237
G+P V ++ + A+E + + G+ G AA ++ TV
Sbjct: 87 GDPMVATTHSSLAAEALEAGV----AVRYIPGVSGVQ---AARGATMLSFYRFGGTV--- 136
Query: 238 TVPFCFEGRRRAIQAQEGVANLRNNVDTLI 267
T+P + G A+ NL + T
Sbjct: 137 TLPGPWRGVTPISVARRIYLNLCAGLHTTA 166
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain
{Archaeon Haloarcula marismortui [TaxId: 2238]}
Length = 70
Score = 23.8 bits (52), Expect = 7.8
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 217 GAAPVIAGIAKSMGI 231
AA + G S+G+
Sbjct: 53 NAAKEVVGTCTSLGV 67
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 68
Score = 23.8 bits (52), Expect = 7.9
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 217 GAAPVIAGIAKSMGI 231
I G A+SMG+
Sbjct: 51 AMTRSIEGTARSMGL 65
>d1nrfa_ e.3.1.1 (A:) Penicillin receptor BlaR, C-terminal domain
{Bacillus licheniformis [TaxId: 1402]}
Length = 246
Score = 25.1 bits (54), Expect = 9.0
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 211 GGGTGTGAAPVIAGIAKSMGIL 232
G+ AA + I GI
Sbjct: 224 KRAAGSSAAEIALSILDKKGIY 245
>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic" alpha-amylase
(glucan 1,4-alpha-maltohydrolase), domain D {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 81
Score = 23.8 bits (51), Expect = 9.3
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 81 GDGTNVLFGSMKEGLGESVSESLRQSSVPNNNNEAKIKVIGVGGGGSNAVN 131
G + +S + + + VPN + GG SN +
Sbjct: 28 GTTQGTVTFGGVTATVKSWTSNRIEVYVPNMAAGLTDVKVTAGGVSSNLYS 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.381
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 979,729
Number of extensions: 43525
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 31
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)