BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044091
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H8E|A Chain A, Structure Of S. Aureus Undecaprenyl Diphosphate Synthase
In Complex With Fpp And Sulfate
Length = 256
Score = 139 bits (350), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 114/189 (60%), Gaps = 2/189 (1%)
Query: 87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
EEL ++P H+A+IMDGN RWA R +P G+ G++++K + + G++ LT++A
Sbjct: 17 EELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYA 76
Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
FS++NW RPE EV ++M+L + +K I + +++ IG T KLPK E + N E
Sbjct: 77 FSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKE 136
Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
T NNT +LI A++Y G+ +LV + + + ++ + + + E+ I L T ++P
Sbjct: 137 KTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMT--KDYP 194
Query: 267 YPDLLIRTS 275
P+LLIRTS
Sbjct: 195 DPELLIRTS 203
>pdb|1UEH|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Triton X- 100, Magnesium And Sulfate
pdb|1UEH|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Triton X- 100, Magnesium And Sulfate
pdb|1V7U|A Chain A, Crystal Structure Of Undecaprenyl Pyrophosphate Synthase
With Farnesyl Pyrophosphate
pdb|1V7U|B Chain B, Crystal Structure Of Undecaprenyl Pyrophosphate Synthase
With Farnesyl Pyrophosphate
pdb|1X06|A Chain A, Crystal Structure Of Undecaprenyl Pyrophosphate Synthase
In Complex With Mg, Ipp And Fspp
pdb|1X07|A Chain A, Crystal Structure Of Undecaprenyl Pyrophosphate Synthase
In Complex With Mg And Ipp
pdb|2E98|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-629
pdb|2E98|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-629
pdb|2E99|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-608
pdb|2E99|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-608
pdb|2E9A|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-628
pdb|2E9A|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-628
pdb|2E9C|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-675
pdb|2E9C|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-675
pdb|2E9D|A Chain A, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-676
pdb|2E9D|B Chain B, E. Coli Undecaprenyl Pyrophosphate Synthase In Complex
With Bph-676
pdb|3QAS|B Chain B, Structure Of Undecaprenyl Diphosphate Synthase
pdb|3QAS|A Chain A, Structure Of Undecaprenyl Diphosphate Synthase
pdb|3TH8|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase
Complexed With Bph-1063
pdb|3TH8|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase
Complexed With Bph-1063
pdb|3SGT|B Chain B, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
Synthase In Complex With Bph-1299
pdb|3SGT|A Chain A, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
Synthase In Complex With Bph-1299
pdb|3SGV|B Chain B, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
Synthase In Complex With Bph-1290
pdb|3SGV|A Chain A, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
Synthase In Complex With Bph-1290
pdb|3SGX|A Chain A, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
Synthase In Complex With Bph-1100
pdb|3SGX|B Chain B, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
Synthase In Complex With Bph-1100
pdb|3SH0|B Chain B, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
Synthase In Complex With Bph-1065
pdb|3SH0|A Chain A, Crystal Structure Of E. Coli Undecaprenyl Pyrophosphate
Synthase In Complex With Bph-1065
pdb|4H2J|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1354
pdb|4H2J|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1354
pdb|4H2M|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1408
pdb|4H2M|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1408
pdb|4H2O|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1248
pdb|4H2O|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1248
pdb|4H38|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1297
pdb|4H38|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1297
pdb|4H3A|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1330
pdb|4H3A|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-1330
pdb|4H3C|A Chain A, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-987
pdb|4H3C|B Chain B, Structure Of E. Coli Undecaprenyl Diphosphate Synthase In
Complex With Bph-987
Length = 253
Score = 137 bits (344), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 105/181 (58%), Gaps = 4/181 (2%)
Query: 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
RHVA+IMDGN RWA +G G++AG KS++ V GI LT++AFSS+NW RP
Sbjct: 19 RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
EV LM L + E +S R +R+ +IGDTS+ L+E + T NT
Sbjct: 79 AQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLT 138
Query: 216 LIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP-DLLIRT 274
L +A +Y G++D+VQ +++A KV+ G ++P+ + E ++ Q + C P DL+IRT
Sbjct: 139 LNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHV---CMHELAPVDLVIRT 195
Query: 275 S 275
Sbjct: 196 G 196
>pdb|1X08|A Chain A, Crystal Structure Of D26a Mutant Upps In Complex With Mg,
Ipp And Fspp
pdb|1X09|A Chain A, Crystal Structure Of The D26a Mutant Upps In Complex With
Magnesium And Isopentenyl Pyrophosphate
Length = 253
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 104/181 (57%), Gaps = 4/181 (2%)
Query: 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
RHVA+IM GN RWA +G G++AG KS++ V GI LT++AFSS+NW RP
Sbjct: 19 RHVAIIMAGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
EV LM L + E +S R +R+ +IGDTS+ L+E + T NT
Sbjct: 79 AQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLT 138
Query: 216 LIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP-DLLIRT 274
L +A +Y G++D+VQ +++A KV+ G ++P+ + E ++ Q + C P DL+IRT
Sbjct: 139 LNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHV---CMHELAPVDLVIRT 195
Query: 275 S 275
Sbjct: 196 G 196
>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase
pdb|1JP3|B Chain B, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase
Length = 253
Score = 130 bits (327), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 102/181 (56%), Gaps = 4/181 (2%)
Query: 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
RHVA+I DGN RWA +G G++AG KS++ V GI LT++AFSS+NW RP
Sbjct: 19 RHVAIIXDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
EV L L + E +S R +R+ +IGDTS+ L+E + T NT
Sbjct: 79 AQEVSALXELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLT 138
Query: 216 LIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP-DLLIRT 274
L +A +Y G++D+VQ +++A KV+ G ++P+ + E + Q + C P DL+IRT
Sbjct: 139 LNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEXLNQHV---CXHELAPVDLVIRT 195
Query: 275 S 275
Sbjct: 196 G 196
>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase
From Micrococcus Luteus B-P 26
pdb|1F75|B Chain B, Crystal Structure Of Undecaprenyl Diphosphate Synthase
From Micrococcus Luteus B-P 26
Length = 249
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 107/182 (58%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P+H+A+IMDGN RWA + +P G+ G+++++ + G++ LT++AFS++NW
Sbjct: 20 IPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWS 79
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP+ EV +LM L + I + +++ IG LP ++ V+ E TK+NT
Sbjct: 80 RPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTG 139
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
L+ A++Y G+ +++ A Q IA + K G I +++SE+ + L T P P+LLIR
Sbjct: 140 LTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFT--ANMPDPELLIR 197
Query: 274 TS 275
TS
Sbjct: 198 TS 199
>pdb|3UGS|B Chain B, Crystal Structure Of A Probable Undecaprenyl Diphosphate
Synthase (Upps) From Campylobacter Jejuni
pdb|3UGS|A Chain A, Crystal Structure Of A Probable Undecaprenyl Diphosphate
Synthase (Upps) From Campylobacter Jejuni
Length = 225
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 91/143 (63%)
Query: 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
+H+AV+MDGNRRWA +G GY GVK+++ L+E+C + I L++FAFS++NW RP
Sbjct: 8 KHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRP 67
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
+ E++F+ LL+ + E E F + +R+ IGD S+L + E + V E TK+
Sbjct: 68 KDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALC 127
Query: 216 LIVAVSYSGQYDLVQACQRIAMK 238
+ +A+SY + ++++A +R+ K
Sbjct: 128 VNLAISYGARDEIIRAAKRVIEK 150
>pdb|2D2R|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl
Pyrophosphate Synthase
pdb|2D2R|B Chain B, Crystal Structure Of Helicobacter Pylori Undecaprenyl
Pyrophosphate Synthase
pdb|2DTN|A Chain A, Crystal Structure Of Helicobacter Pylori Undecaprenyl
Pyrophosphate Synthase Complexed With Pyrophosphate
pdb|2DTN|B Chain B, Crystal Structure Of Helicobacter Pylori Undecaprenyl
Pyrophosphate Synthase Complexed With Pyrophosphate
Length = 245
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 113/198 (57%), Gaps = 19/198 (9%)
Query: 85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
L+E+L +S +H+A+IMDGN RWA L+ G++ GVK+LK + C + LT+
Sbjct: 8 LSEKL--DSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTL 65
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
+AFS++NW RP+ EV+FLM +L+ +K+E+ +++ IR IGD K L + ++ +
Sbjct: 66 YAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILQL 125
Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIE--PNDVS-----ESLIEQE 257
T++ F ++A++Y + +L +A + L+E P+++S E+ I
Sbjct: 126 ENDTRHFKDFTQVLALNYGSKNELSRAFK--------SLLESPPSNISLLESLENEISNR 177
Query: 258 LETNCTEFPYPDLLIRTS 275
L+T P DLL+RT
Sbjct: 178 LDTR--NLPEVDLLLRTG 193
>pdb|2VG2|A Chain A, Rv2361 With Ipp
pdb|2VG2|B Chain B, Rv2361 With Ipp
pdb|2VG2|C Chain C, Rv2361 With Ipp
pdb|2VG2|D Chain D, Rv2361 With Ipp
pdb|2VG4|A Chain A, Rv2361 Native
pdb|2VG4|B Chain B, Rv2361 Native
pdb|2VG4|C Chain C, Rv2361 Native
pdb|2VG4|D Chain D, Rv2361 Native
pdb|2VG3|A Chain A, Rv2361 With Citronellyl Pyrophosphate
pdb|2VG3|B Chain B, Rv2361 With Citronellyl Pyrophosphate
pdb|2VG3|C Chain C, Rv2361 With Citronellyl Pyrophosphate
pdb|2VG3|D Chain D, Rv2361 With Citronellyl Pyrophosphate
Length = 284
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 2/192 (1%)
Query: 84 ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLT 143
A A + + +P HVA++MDGN RWA RGL G++ G + + + GI+ L+
Sbjct: 45 AAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLS 104
Query: 144 VFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVIN 203
++AFS++NW R EV FLM V+ +++ + +RI +G +L + + +
Sbjct: 105 LYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAV 164
Query: 204 VVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCT 263
E TK+N + V+Y G+ ++ +A + IA +V G + P ++ES I + L+
Sbjct: 165 AEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPERITESTIARHLQR--P 222
Query: 264 EFPYPDLLIRTS 275
+ P DL +RTS
Sbjct: 223 DIPDVDLFLRTS 234
>pdb|2VG1|A Chain A, Rv1086 E,E-Farnesyl Diphosphate Complex
pdb|2VG1|B Chain B, Rv1086 E,E-Farnesyl Diphosphate Complex
Length = 228
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGL-PVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
+PRH+AV+ DGNRRWA G V GY G + ++ C + GI + TV+ S++N
Sbjct: 2 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTEN 61
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
R E+ L+ ++ V+E +R +GD + + + VE+T
Sbjct: 62 LQRDPDELAALIEIITDVVEEICAPANHWSVR--TVGDLGLIGEEPARRLRGAVESTPEV 119
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMK-VKDGLIEPNDVSESLIEQELETNCTEF-PYPD 269
F + VAV Y G+ ++V A + + K + +G V +E E T P PD
Sbjct: 120 ASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPD 179
Query: 270 LLIRTS 275
L+IRTS
Sbjct: 180 LVIRTS 185
>pdb|2VFW|A Chain A, Rv1086 Native
pdb|2VFW|B Chain B, Rv1086 Native
pdb|2VG0|A Chain A, Rv1086 Citronelly Pyrophosphate Complex
pdb|2VG0|B Chain B, Rv1086 Citronelly Pyrophosphate Complex
Length = 227
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 5/186 (2%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGL-PVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
+PRH+AV+ DGNRRWA G V GY G + ++ C + GI + TV+ S++N
Sbjct: 1 DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTEN 60
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
R E+ L+ ++ V+E +R +GD + + + VE+T
Sbjct: 61 LQRDPDELAALIEIITDVVEEICAPANHWSVR--TVGDLGLIGEEPARRLRGAVESTPEV 118
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMK-VKDGLIEPNDVSESLIEQELETNCTEF-PYPD 269
F + VAV Y G+ ++V A + + K + +G V +E E T P PD
Sbjct: 119 ASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPD 178
Query: 270 LLIRTS 275
L+IRTS
Sbjct: 179 LVIRTS 184
>pdb|1X6M|A Chain A, Crystal Structure Of The Glutathione-dependent
Formaldehyde-activating Enzyme (gfa)
pdb|1X6M|B Chain B, Crystal Structure Of The Glutathione-dependent
Formaldehyde-activating Enzyme (gfa)
pdb|1X6M|C Chain C, Crystal Structure Of The Glutathione-dependent
Formaldehyde-activating Enzyme (gfa)
pdb|1X6M|D Chain D, Crystal Structure Of The Glutathione-dependent
Formaldehyde-activating Enzyme (gfa)
pdb|1XA8|A Chain A, Crystal Structure Analysis Of Glutathione-Dependent
Formaldehyde- Activating Enzyme (Gfa)
pdb|1XA8|B Chain B, Crystal Structure Analysis Of Glutathione-Dependent
Formaldehyde- Activating Enzyme (Gfa)
pdb|1XA8|C Chain C, Crystal Structure Analysis Of Glutathione-Dependent
Formaldehyde- Activating Enzyme (Gfa)
pdb|1XA8|D Chain D, Crystal Structure Analysis Of Glutathione-Dependent
Formaldehyde- Activating Enzyme (Gfa)
Length = 196
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 137 WGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIR 183
+G+ + D W PE F+ S++ESGV + IR R+R
Sbjct: 120 YGLDFVHTELSDEDGWSAPEFAA-FVSSIIESGVDPSRMEAIRARLR 165
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
pdb|3D36|B Chain B, How To Switch Off A Histidine Kinase: Crystal Structure Of
Geobacillus Stearothermophilus Kinb With The Inhibitor
Sda
Length = 244
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 185 SVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVS 221
SVIG+ K +CL ++ N +E N Q+ V++
Sbjct: 116 SVIGEREKFRQCLLNVMKNAIEAMPNGGTLQVYVSID 152
>pdb|2QF6|A Chain A, Hsp90 Complexed With A56322
pdb|2QF6|B Chain B, Hsp90 Complexed With A56322
pdb|2QF6|C Chain C, Hsp90 Complexed With A56322
pdb|2QF6|D Chain D, Hsp90 Complexed With A56322
pdb|2QG2|A Chain A, Hsp90 Complexed With A917985
pdb|3OW6|A Chain A, Crystal Structure Of Hsp90 With N-Aryl-Benzimidazolone I
pdb|3OWB|A Chain A, Crystal Structure Of Hsp90 With Ver-49009
pdb|3OWD|A Chain A, Crystal Structure Of Hsp90 With N-Aryl-Benzimidazolone Ii
Length = 207
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRE----------RIRISVIGDTSKLPKCLEELVI 202
F + E+ LMSL+ + KE F+RE +IR + D SKL +EL I
Sbjct: 4 FAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYETLTDPSKLDSG-KELHI 62
Query: 203 NVVETTKNNT 212
N++ ++ T
Sbjct: 63 NLIPNKQDRT 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,222,415
Number of Sequences: 62578
Number of extensions: 261449
Number of successful extensions: 621
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 50
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)