BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044091
(275 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56Y11|DDPS2_ARATH Dehydrodolichyl diphosphate synthase 2 OS=Arabidopsis thaliana
GN=At5g58770 PE=2 SV=2
Length = 310
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 117/184 (63%), Positives = 145/184 (78%)
Query: 92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
E MP+HVA+IMDGN RWA RGL G+ AGV++LK +VELC KWGI+VLTVFAFS+DN
Sbjct: 75 ELMPKHVAIIMDGNGRWAKNRGLQPWDGHRAGVEALKEIVELCGKWGIQVLTVFAFSTDN 134
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
W RP +E++FL SL E +K E ++ + +RIS+IGD+SKLPK L ++ V E TKNN
Sbjct: 135 WIRPRIEIDFLFSLFERSLKTEFQNLAKNNVRISIIGDSSKLPKSLLRVINEVEEVTKNN 194
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL 271
TR QLIVAV YSG+YD++QAC+ IA +VKDG IE ++ E LIE+ELETNCTEFPYPDLL
Sbjct: 195 TRLQLIVAVGYSGKYDVLQACRGIARRVKDGEIEVEEIDERLIEEELETNCTEFPYPDLL 254
Query: 272 IRTS 275
IRTS
Sbjct: 255 IRTS 258
>sp|Q8RX73|DDPS3_ARATH Dehydrodolichyl diphosphate synthase 3 OS=Arabidopsis thaliana
GN=At5g58780 PE=2 SV=1
Length = 302
Score = 202 bits (513), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/190 (53%), Positives = 133/190 (70%)
Query: 86 AEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVF 145
EELQRE MPRHVAVIMDGNRRWA GL G+EAG K L ELC K GI ++ F
Sbjct: 62 VEELQRELMPRHVAVIMDGNRRWAKRAGLLTSQGHEAGAKRLIEFSELCFKLGIHTVSAF 121
Query: 146 AFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVV 205
AFS++NW R ++EV+ LMSL++ +K + + F RE R+SVIG+ +K+P+ L V +
Sbjct: 122 AFSTENWGRHKIEVKCLMSLIQHYLKSKIQYFQREETRVSVIGNLTKIPESLLRTVQEIE 181
Query: 206 ETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEF 265
E T++ + LI+A+ YSG+ D+++AC+ I K + GLI DV E+LIE+EL TNCTEF
Sbjct: 182 EATRSYKKKHLILAIDYSGRLDILRACKSIVKKSEKGLIREEDVDEALIERELLTNCTEF 241
Query: 266 PYPDLLIRTS 275
P PDLLIRTS
Sbjct: 242 PSPDLLIRTS 251
>sp|Q8GY03|DDPS4_ARATH Dehydrodolichyl diphosphate synthase 4 OS=Arabidopsis thaliana
GN=At5g58782 PE=2 SV=1
Length = 289
Score = 197 bits (501), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 130/189 (68%)
Query: 87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
+ELQRE MPRHVAVIMDGNRRWA GL GYEAG K L +LC K GI ++ FA
Sbjct: 50 KELQRELMPRHVAVIMDGNRRWAKQTGLLTSQGYEAGAKRLLEFADLCFKLGINTVSAFA 109
Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
FS++NW R ++EV+ LM L + +K + + F + IR+SVIG+ +K+P+ L V + E
Sbjct: 110 FSTENWGRHKIEVKCLMYLFQRYLKSKIQFFQSKEIRVSVIGNLAKIPESLLRTVHELEE 169
Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
TK+ + LI+A+ YSG++D++ AC+ I K + GLI DV E+L E+EL+T CTEFP
Sbjct: 170 ATKSYKKKHLILAIDYSGRFDILGACKNIVKKSEQGLIREEDVDETLFERELQTRCTEFP 229
Query: 267 YPDLLIRTS 275
PDLLIRTS
Sbjct: 230 SPDLLIRTS 238
>sp|Q570Q8|DDPS5_ARATH Dehydrodolichyl diphosphate synthase 5 OS=Arabidopsis thaliana
GN=At5g58784 PE=2 SV=2
Length = 302
Score = 189 bits (481), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 151/244 (61%), Gaps = 4/244 (1%)
Query: 32 LASHVCPSELLSIRKRPGSACAATTQHRRYLLFPAEEEEEEEREVKFTSDAPALAEELQR 91
LA + P L I +R + T R + ++ ++EEER K + ++ R
Sbjct: 12 LALFLIPG--LFISRRLNVPLSLTNILRFIKIIASKYDDEEERNEKRGTMGEK--QKRGR 67
Query: 92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
MP+HVAVI+DGNRRWA RGL G+EAG + L + C G +++FAFS++N
Sbjct: 68 NIMPKHVAVILDGNRRWAEKRGLGTSEGHEAGARRLMENAKDCFAMGTNTISLFAFSTEN 127
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
W RPE EV+ LM+L E + + ++I+ISVIG+ +KLP+ L L+ V E TK+
Sbjct: 128 WERPEDEVKCLMALFEKYLASDMPYLRSDKIKISVIGNRTKLPESLLGLIEEVEEATKSY 187
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL 271
LI+A+ YSG+YD++QAC+ +A KVKDGLI+ D++E +E+EL T C+EFP PDLL
Sbjct: 188 EGKNLIIAIDYSGRYDILQACKSLANKVKDGLIQVEDINEKAMEKELLTKCSEFPNPDLL 247
Query: 272 IRTS 275
IRTS
Sbjct: 248 IRTS 251
>sp|O80458|DDPS1_ARATH Dehydrodolichyl diphosphate synthase 1 OS=Arabidopsis thaliana
GN=DPS PE=1 SV=2
Length = 303
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 128/188 (68%), Gaps = 1/188 (0%)
Query: 89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
LQRE MPRHVA I+DGNRRWA GL G+EAG K L + ELC + G+ ++ FAFS
Sbjct: 65 LQRELMPRHVAFILDGNRRWAKRAGLTTSQGHEAGAKRLIDIAELCFELGVHTVSAFAFS 124
Query: 149 SDNWFRPEVEVEFLMSLLESGV-KEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
++NW R ++E++ LMSL++ K + F R +R+SVIG+ +K+P+ L + + + E
Sbjct: 125 TENWGRDKIEIDNLMSLIQHYRNKSNIKFFHRSEVRVSVIGNKTKIPESLLKEIHEIEEA 184
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
TK LI+AV YSG++D++ AC+ + K + GLI DV E+LIE+EL TNC++FP
Sbjct: 185 TKGYKNKHLIMAVDYSGKFDIMHACKSLVKKSEKGLIREEDVDEALIERELLTNCSDFPS 244
Query: 268 PDLLIRTS 275
PDL+IRTS
Sbjct: 245 PDLMIRTS 252
>sp|Q8DI29|ISPT_THEEB Isoprenyl transferase OS=Thermosynechococcus elongatus (strain
BP-1) GN=uppS PE=3 SV=1
Length = 251
Score = 180 bits (457), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 122/191 (63%), Gaps = 2/191 (1%)
Query: 85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
L +L R+ +PRHVAVIMDGN RWA R LP G++ GV +LK L+ C WGI LT
Sbjct: 13 LPADLDRDRLPRHVAVIMDGNGRWAKQRNLPRIMGHQRGVDTLKDLLRCCKDWGIEALTA 72
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
+AFS++NW RP EVEFLM+L E ++ E + E ++I +GD + LPK L+ +
Sbjct: 73 YAFSTENWGRPLPEVEFLMTLFEQVLRRELGEMVAEGVQIHFVGDLTCLPKSLQAEIERA 132
Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
V T NN + + +VA +Y G+ +++ AC+ IA +VK GL++P D+ E L E+ L T
Sbjct: 133 VAATANNQKIKFVVATNYGGRREIIHACRSIAAQVKAGLLDPADIDEVLFERHLYTGG-- 190
Query: 265 FPYPDLLIRTS 275
P PDLLIRTS
Sbjct: 191 LPDPDLLIRTS 201
>sp|Q9ZEJ7|ISPT_ANAVT Isoprenyl transferase OS=Anabaena variabilis (strain ATCC 29413 /
PCC 7937) GN=uppS PE=3 SV=2
Length = 249
Score = 176 bits (446), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 127/188 (67%), Gaps = 2/188 (1%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
+L+RE +P+HVAVIMDGN RWA +GLP G++ GV +LK L+ C WGI+ LT +AF
Sbjct: 14 DLKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAF 73
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
S++NW RP+ EVEFLM+L + +++E + E ++I +G+ + LP+ L+ + +E
Sbjct: 74 STENWKRPQEEVEFLMTLFQRVLRQELREMVEENVQIQFVGNLAALPRSLQAEISRSMEA 133
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
TKNN + VA +Y G+ +++QAC+ IA KV+ GL++P+++ E + E+ L T
Sbjct: 134 TKNNRGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQPDEIDEEVFERHLYT--AGIAD 191
Query: 268 PDLLIRTS 275
PDLLIRTS
Sbjct: 192 PDLLIRTS 199
>sp|P58563|ISPT1_NOSS1 Isoprenyl transferase 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=uppS1 PE=3 SV=1
Length = 249
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/188 (44%), Positives = 128/188 (68%), Gaps = 2/188 (1%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
+L+RE +P+HVAVIMDGN RWA +GLP G++ GV +LK L+ C WGI+ LT +AF
Sbjct: 14 DLKRELLPKHVAVIMDGNGRWAKRQGLPRIMGHKRGVDALKDLLRCCRDWGIQALTAYAF 73
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
S++NW RP+ EVEFLM+L + +++E + E ++I +G+ + LP+ L+ + +E
Sbjct: 74 STENWKRPQEEVEFLMTLFQRVLRQELREMVEENVQIQFVGNLTALPRSLQAEISRSMEE 133
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
TKNN + VA +Y G+ +++QAC+ IA KV+ GL++P++++E + E+ L T
Sbjct: 134 TKNNRGIRFSVATNYGGRQEILQACRAIAQKVQQGLLQPDEINEEVFERHLYT--AGISD 191
Query: 268 PDLLIRTS 275
PDLLIRTS
Sbjct: 192 PDLLIRTS 199
>sp|Q55482|ISPT_SYNY3 Isoprenyl transferase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=uppS PE=3 SV=1
Length = 249
Score = 175 bits (443), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/191 (43%), Positives = 124/191 (64%), Gaps = 2/191 (1%)
Query: 85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
L +L ++ +P+HVAVIMDGN RWA RG+P G++ GV SLK L+ C WGI LT
Sbjct: 11 LPPDLDQQRLPQHVAVIMDGNGRWAKQRGMPRIMGHQRGVDSLKNLLRCCDDWGIAALTA 70
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
+AFS++NW RP EVEFLM+L E ++ E + + E +RI +G+ + LP+ L++ +
Sbjct: 71 YAFSTENWGRPLEEVEFLMTLFERVLRRELKEMMAENVRIRFVGNLTSLPRSLQDEIARS 130
Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
+E TKNNT + VA +Y G+ ++V CQ IA +V+ G ++P + E ++E+ L T
Sbjct: 131 MEDTKNNTGIRFTVATNYGGRQEIVHVCQAIAREVQSGKLDPETIDEGVVEKYLYTEG-- 188
Query: 265 FPYPDLLIRTS 275
+PDLLIRTS
Sbjct: 189 LSHPDLLIRTS 199
>sp|B8XA40|ZFPS_SOLHA (2Z,6Z)-farnesyl diphosphate synthase, chloroplastic OS=Solanum
habrochaites GN=ZFPS PE=1 SV=1
Length = 303
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/188 (43%), Positives = 122/188 (64%), Gaps = 7/188 (3%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
+L E MP+H+A+IMDGNRRWA +GL V G++ LK + ++ K GI+V+T FAF
Sbjct: 71 DLDEELMPKHIALIMDGNRRWAKDKGLDVSEGHKHLFPKLKEICDISSKLGIQVITAFAF 130
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
S++NW R + EV+FLM + E E + F R +R+S+IG + LP L++ + ET
Sbjct: 131 STENWKRAKGEVDFLMQMFE----ELYDEFSRSGVRVSIIGCKTDLPMTLQKCIALTEET 186
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
TK N L++A++Y G YD++QA + I K +GL++ D++++L +QELE+ C P
Sbjct: 187 TKGNKGLHLVIALNYGGYYDILQATKSIVNKAMNGLLDVEDINKNLFDQELESKC---PN 243
Query: 268 PDLLIRTS 275
PDLLIRT
Sbjct: 244 PDLLIRTG 251
>sp|Q7NPE7|ISPT_GLOVI Isoprenyl transferase OS=Gloeobacter violaceus (strain PCC 7421)
GN=uppS PE=3 SV=1
Length = 249
Score = 166 bits (420), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 115/192 (59%), Gaps = 2/192 (1%)
Query: 84 ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLT 143
+L +L +PRHVA IMDGN RWA R LP G++AGV +LK L+ C WGI LT
Sbjct: 10 SLPSDLDPNRLPRHVAAIMDGNGRWASKRNLPRVMGHQAGVSALKELLRCCKDWGIGALT 69
Query: 144 VFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVIN 203
V+AFS++NW RP+ EVEFLM+L E + E + E +RI +G + LP L+ +
Sbjct: 70 VYAFSTENWKRPQYEVEFLMALFEKVLNHELSEMVDEGVRIRFVGALAHLPGALQSAIEG 129
Query: 204 VVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCT 263
+ T+ NT + VA +Y G+ ++V AC+ +A +V+ G + P + E L Q L T
Sbjct: 130 AMAATEANTAVEFTVATNYGGRQEIVNACRELAEQVRSGRLLPEQIDEKLFAQHLYTR-- 187
Query: 264 EFPYPDLLIRTS 275
E PDLLIRTS
Sbjct: 188 ELSDPDLLIRTS 199
>sp|C1K5M2|NDPS_SOLLC Dimethylallylcistransferase, chloroplastic OS=Solanum lycopersicum
GN=NDPS1 PE=1 SV=1
Length = 303
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/188 (42%), Positives = 123/188 (65%), Gaps = 7/188 (3%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
+L E MP+H+A+IMDGNRRWA +GL V G++ + LK + ++ K GI+++T FAF
Sbjct: 71 DLDEELMPKHIALIMDGNRRWAKDKGLEVYEGHKHIIPKLKEICDISSKLGIQIITAFAF 130
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
S++NW R + EV+FL+ + E E + F R +R+S+IG S LP L++ + ET
Sbjct: 131 STENWKRSKEEVDFLLQMFE----EIYDEFSRSGVRVSIIGCKSDLPMTLQKCIALTEET 186
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
TK N L++A++Y G YD++QA + I K +GL++ D++++L +QELE+ C P
Sbjct: 187 TKGNKGLHLVIALNYGGYYDILQATKSIVNKAMNGLLDVEDINKNLFDQELESKC---PN 243
Query: 268 PDLLIRTS 275
PDLLIRT
Sbjct: 244 PDLLIRTG 251
>sp|Q8YRL4|ISPT2_NOSS1 Isoprenyl transferase 2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=uppS2 PE=3 SV=1
Length = 258
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 82/188 (43%), Positives = 119/188 (63%), Gaps = 2/188 (1%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
+L + +P+H+AVIMDGN RWA RGLP +G+ G ++LK L+ C WGI+ LT +AF
Sbjct: 17 DLDPQKIPQHIAVIMDGNGRWATSRGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAF 76
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
S++NW RP EV+FLM L E ++ E RE +RIS IGD + LPK L+ + +
Sbjct: 77 STENWQRPIEEVDFLMLLFERLLRRELSQMHREGVRISFIGDLTALPKSLQTEMERSMTE 136
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
T NN VAV+Y + ++ +AC+++A V+ G + + V+E ++EQ L T T+
Sbjct: 137 TLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSADAVNEGIVEQHLYTTDTQ--P 194
Query: 268 PDLLIRTS 275
PDLLIRTS
Sbjct: 195 PDLLIRTS 202
>sp|Q7VBI9|ISPT_PROMA Isoprenyl transferase OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=uppS PE=3 SV=1
Length = 266
Score = 161 bits (408), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 80/182 (43%), Positives = 116/182 (63%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P H+A+IMDGN RWA+ + LP G+ AGV +LK + LC WGI VLTV+AFS++NW
Sbjct: 27 LPEHIAIIMDGNGRWANAKKLPRAMGHSAGVDALKQTLRLCNDWGIGVLTVYAFSTENWS 86
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP+ EV FLM+L E +K+E E+ E ++IS +GD +LP L++L+ E T N
Sbjct: 87 RPKEEVNFLMTLFERVLKKELEALNLEEVQISFLGDLDQLPTRLQDLINEATELTSGNNG 146
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
+ V +Y G+ +LV A Q++A +V G ++P+ + E EL T + + PDLLIR
Sbjct: 147 IRFNVCTNYGGRRELVLAAQKLAQRVLQGDLDPSFIDEHTFAGELLT--SSYADPDLLIR 204
Query: 274 TS 275
TS
Sbjct: 205 TS 206
>sp|Q7V6T7|ISPT_PROMM Isoprenyl transferase OS=Prochlorococcus marinus (strain MIT 9313)
GN=uppS PE=3 SV=1
Length = 265
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 111/182 (60%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P HVAVIMDGN RWA RGLP G+ AGV++LK + LC WGI LT +AFS++NW
Sbjct: 26 LPNHVAVIMDGNGRWAKARGLPRMVGHRAGVEALKRTLRLCSDWGIGALTAYAFSTENWS 85
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP EV FLM+L E ++ E ES RE++RI +GD LP L+EL+ E T N
Sbjct: 86 RPGDEVNFLMTLFERVLQRELESLEREKVRIRFLGDLEGLPSGLQELISEATELTVRNNG 145
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
V +Y G+ +LV A Q++A + G ++P + E+ E EL T E PDLLIR
Sbjct: 146 IHFNVCTNYGGRRELVLAAQKLAQRAARGDLDPTLIDENSFEAELLT-AGEVD-PDLLIR 203
Query: 274 TS 275
TS
Sbjct: 204 TS 205
>sp|Q88MH6|UPPS_PSEPK Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Pseudomonas
putida (strain KT2440) GN=uppS PE=3 SV=1
Length = 251
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 114/183 (62%), Gaps = 2/183 (1%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
S+PRHVA+IMDGN RWA R LP +G++AGV +++ ++E+C K G+ VLT+FAFSS+NW
Sbjct: 11 SVPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAKSGVEVLTLFAFSSENW 70
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV LM L S ++ E + I + +IGD S+ L+ + T N
Sbjct: 71 QRPAEEVGALMELFFSALRREAKRLDENNISLRIIGDRSRFHPELQAAMREAEAVTAGNN 130
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272
RF L +A +Y GQ+D+ QA QR+A +V+ G + P D++ L++ L T + P PDL I
Sbjct: 131 RFILQIAANYGGQWDIAQAAQRLAREVQAGHLRPEDITPGLLQTCLATG--DLPLPDLCI 188
Query: 273 RTS 275
RT
Sbjct: 189 RTG 191
>sp|Q7N8P2|UPPS_PHOLL Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=uppS PE=3
SV=1
Length = 254
Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 115/182 (63%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P+HVA+IMDGN RWA RG G+ AG+K++++ V K I LT++AFSS+NW
Sbjct: 16 LPKHVAIIMDGNGRWAKKRGKLRAFGHRAGIKAVRSAVSFSAKHNIESLTLYAFSSENWN 75
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RPE EV LM L + E +S + IR+SVIGD + + L++ + V+ T NNT
Sbjct: 76 RPEQEVSSLMELFIFALDSEIKSLHKHNIRLSVIGDIGRFSERLQDRIHRSVKLTANNTG 135
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
QL +A +Y G++D+VQ+ Q+IA ++KD +E D++E L+ + N ++ P DL+IR
Sbjct: 136 LQLNIAANYGGRWDIVQSVQKIAQQIKDNSLEQQDITEELVNNYM--NLSQQPQVDLVIR 193
Query: 274 TS 275
T
Sbjct: 194 TG 195
>sp|Q9HXY2|UPPS_PSEAE Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=uppS PE=3 SV=1
Length = 251
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+PRHVA+IMDGN RWA R LP +G++AGV +++ ++E+C + G+ VLT+FAFSS+NW
Sbjct: 10 VPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQ 69
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP EV LM L ++ E IR+ +IGD ++ L+ + T NTR
Sbjct: 70 RPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTR 129
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
F L VA +Y GQ+D+VQA QR+A +V+ G + +D+S L++ L T + P PDL IR
Sbjct: 130 FLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTG--DQPLPDLCIR 187
Query: 274 TS 275
T
Sbjct: 188 TG 189
>sp|Q8KFQ5|ISPT_CHLTE Isoprenyl transferase OS=Chlorobium tepidum (strain ATCC 49652 /
DSM 12025 / TLS) GN=uppS PE=3 SV=1
Length = 265
Score = 155 bits (392), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 115/182 (63%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+PRH+ +IMDGN RWA ++G +G+ AGV+S++ +VE + GI LT+F FS +NW
Sbjct: 26 LPRHIGIIMDGNGRWAKIKGKSRIAGHVAGVESVRDVVEASSQLGIENLTLFTFSIENWK 85
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP+ E+ LM LL +++E + IR+ VIGD +P + + + +E T+ N
Sbjct: 86 RPKPEISALMKLLIKVLRKEAVKLLENDIRLEVIGDMEMIPDDVRKTLDETIELTRKNRG 145
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
+ +A+SYSG++D+ QAC+ IA++VK GL++P + E+L L T P PDLLIR
Sbjct: 146 MAMTIALSYSGKWDITQACRHIALQVKQGLLDPETIDENLFASYLST--ASMPDPDLLIR 203
Query: 274 TS 275
TS
Sbjct: 204 TS 205
>sp|Q886N9|UPPS_PSESM Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=uppS PE=3 SV=1
Length = 251
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 115/183 (62%), Gaps = 2/183 (1%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
S+PRHVA+IMDGN RWA R LP +G++AGV +++ ++E+C + + VLT+FAFSS+NW
Sbjct: 11 SVPRHVAIIMDGNNRWARKRLLPGVAGHKAGVDAVRAVIEVCAEAKVEVLTLFAFSSENW 70
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV LM L + ++ E + I + +IGD S+ L+ + T N+
Sbjct: 71 QRPAEEVGALMELFFTALRRETKRLNENDISLRIIGDRSRFHPELQAAMREAEVRTSGNS 130
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272
RF L +A +Y GQ+D+ QA QR+A +V+ G ++P D++ L++ L T + P PDL I
Sbjct: 131 RFVLQIAANYGGQWDIAQAAQRLAREVQAGHLQPEDITPQLLQTCLATG--DLPLPDLCI 188
Query: 273 RTS 275
RT
Sbjct: 189 RTG 191
>sp|Q7V102|ISPT_PROMP Isoprenyl transferase OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=uppS PE=3 SV=1
Length = 272
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/186 (42%), Positives = 116/186 (62%), Gaps = 2/186 (1%)
Query: 90 QRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149
+E +P H+A+IMDGN RWA +GLP G+ GV LK +++ +VLTV+AFS+
Sbjct: 19 DKERIPEHIAIIMDGNGRWATKKGLPRSFGHNKGVSVLKEIIKASKNIDCKVLTVYAFST 78
Query: 150 DNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTK 209
+NW RP EV+FL++L E +K+E +E I+I IGD S LP L+ L+ + T
Sbjct: 79 ENWIRPSNEVDFLINLFEKVLKKEISEIHQESIKIKFIGDLSPLPNSLKLLIKSSEALTN 138
Query: 210 NNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPD 269
NN +F L + V+Y G+ ++V+A + IA+K G I+P+D+ E L EL T + P+
Sbjct: 139 NNKKFTLNICVNYGGRQEIVKAAKEIAIKSSSGKIKPSDIDEQLFNSELLTKGS--MDPE 196
Query: 270 LLIRTS 275
LLIRTS
Sbjct: 197 LLIRTS 202
>sp|Q7U7P7|ISPT_SYNPX Isoprenyl transferase OS=Synechococcus sp. (strain WH8102) GN=uppS
PE=3 SV=1
Length = 260
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/188 (44%), Positives = 117/188 (62%), Gaps = 2/188 (1%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
EL + +P HVAVIMDGN RWA RGLP G+ AGV++LK+ + LC WGI LT +AF
Sbjct: 20 ELDGDRLPVHVAVIMDGNGRWAEARGLPRMMGHRAGVEALKSTLRLCSDWGIAALTAYAF 79
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
S++NW RP EV FLM+L E +++E + E++RI +GD LP L+EL+ + E
Sbjct: 80 STENWSRPGDEVNFLMTLFERVLQKELRTLEEEQVRIRFLGDLDALPLKLQELIGDATER 139
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
T N V +Y G+ +LV+A QR+A + +G + P D+ E+ + EL T +
Sbjct: 140 TAANDGIHFNVCTNYGGRRELVRAAQRLARQAANGDLMPEDIDENSLAAELFTAGEQ--D 197
Query: 268 PDLLIRTS 275
PDLLIRTS
Sbjct: 198 PDLLIRTS 205
>sp|Q8GDY3|ISPT_HELMO Isoprenyl transferase OS=Heliobacillus mobilis GN=uppS PE=3 SV=1
Length = 260
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/201 (39%), Positives = 120/201 (59%), Gaps = 2/201 (0%)
Query: 75 EVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELC 134
+ K ++D AL+E++ +P+H+A+IMDGN RWA RGLP +G+ AGV+SL+ ++E+C
Sbjct: 10 QTKTSADEQALSEQIDPHRIPKHIAIIMDGNGRWAKRRGLPRVAGHRAGVESLRRVLEVC 69
Query: 135 CKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLP 194
+ I LTV+AFS++NW RP EV L LL + E + + +RI IG LP
Sbjct: 70 EDYNIAYLTVYAFSTENWKRPADEVNALFDLLVEYLHRELNTLHSKGVRIRAIGKIEDLP 129
Query: 195 KCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLI 254
+ + T NNTR L VA++Y G++++V+A + IA +G + P+ + E +
Sbjct: 130 GGPRRELEKAIAKTANNTRLVLNVALNYGGRFEIVEAVKSIARLAAEGKVNPDQIDEKYM 189
Query: 255 EQELETNCTEFPYPDLLIRTS 275
Q L T + P PDLLIR S
Sbjct: 190 SQYLYT--ADVPDPDLLIRPS 208
>sp|Q8XJQ9|ISPT_CLOPE Isoprenyl transferase OS=Clostridium perfringens (strain 13 / Type
A) GN=uppS PE=3 SV=1
Length = 253
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 119/187 (63%), Gaps = 2/187 (1%)
Query: 89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
L + MP+H+A+IMDGN RWA RGLP G+ AGVK++KT+V+ C K G++ LT++AFS
Sbjct: 18 LIEDKMPKHIAIIMDGNGRWAKKRGLPRTMGHRAGVKTIKTIVKECDKLGVKYLTLYAFS 77
Query: 149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
++NW RPE EV LM L+ +K E + + +R+ IGD S+ P+ ++ ++ +E T
Sbjct: 78 TENWKRPEDEVNALMKLVVEFIKNEIDELHQNGVRVQTIGDLSRFPEEPKKAILWAMEKT 137
Query: 209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP 268
K+NT L +A++Y G+ ++V+ + + VK G I +D++E + L T P P
Sbjct: 138 KDNTGVVLSLALNYGGRNEIVRGIKSVIEDVKAGKISIDDINEDMFNDYLYTKG--MPDP 195
Query: 269 DLLIRTS 275
DL+IR S
Sbjct: 196 DLIIRPS 202
>sp|Q92Q51|ISPT_RHIME Isoprenyl transferase OS=Rhizobium meliloti (strain 1021) GN=uppS
PE=3 SV=1
Length = 247
Score = 150 bits (380), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/189 (41%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Query: 87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
+E ++P HVA+IMDGN RWA+ RGLP G+ GV++++ V + GIR LT+FA
Sbjct: 2 QEFNPANVPAHVAIIMDGNGRWANARGLPRTMGHRKGVEAVRGAVRTAAEIGIRYLTLFA 61
Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
FSS+NW RPE EV LM LL++ ++ + RE +RI VIGD S L + L+I E
Sbjct: 62 FSSENWNRPENEVSDLMGLLKAFIRRDLADLHRENVRIRVIGDRSNLSGDILPLLIEAEE 121
Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
TT NT +++A +Y + +L +A +R+A +V G + P +++ I ++T P
Sbjct: 122 TTIANTGITVVIAFNYGARDELARAMRRLAGEVAAGRLRPEEITAERISSTIDT--AGIP 179
Query: 267 YPDLLIRTS 275
PDL+IRTS
Sbjct: 180 DPDLIIRTS 188
>sp|Q9X5F1|ISPT_ZYMMO Isoprenyl transferase OS=Zymomonas mobilis subsp. mobilis (strain
ATCC 31821 / ZM4 / CP4) GN=uppS PE=3 SV=2
Length = 248
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+PRHVA+IMDGN RWA R LP +G++ G ++KT V + GI VLT++AFSS+NW
Sbjct: 19 VPRHVAIIMDGNGRWASARHLPRIAGHKKGADAVKTTVRAAAEMGIEVLTLYAFSSENWR 78
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP EV LM LL +++E + I + VIGD ++L + L L+ +E T NNTR
Sbjct: 79 RPASEVADLMGLLRLCLRQEMHNIKERGICLKVIGDYTRLDQDLVALLNQAIEITANNTR 138
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
L+ A++Y Q +LV +RIA K K+G ++P ++ IE L T+ + P DL+IR
Sbjct: 139 LTLVFALNYGAQDELVHVTKRIAEKAKEGQLDPENIDVGTIESLLYTH--DLPPLDLVIR 196
Query: 274 TS 275
TS
Sbjct: 197 TS 198
>sp|Q83BV5|UPPS_COXBU Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=uppS
PE=3 SV=1
Length = 237
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 119/185 (64%), Gaps = 8/185 (4%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+PRHVA++MDGN RWA+ RGLP +G+ AG K ++ +VE + + VLT+FAFS +N
Sbjct: 2 IPRHVAIVMDGNGRWANRRGLPRVAGHRAGAKVVRRIVEYAAEKPLEVLTLFAFSIENRA 61
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP+ EV FLMSL +K+ E + +++ VIGD + K + + + TK+NT
Sbjct: 62 RPQSEVNFLMSLFLDSLKKNTEELHKNNVQLRVIGDHREFDKKMLAQIQTSQDLTKHNTG 121
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN---CTEFPYPDL 270
+LI+A++YSG++D++QA QR+A K+K+ +++ L+ EL N ++ P PDL
Sbjct: 122 LKLIIALNYSGRWDILQAVQRMAEKIKN-----QELTSELMSAELFQNYLCLSDLPEPDL 176
Query: 271 LIRTS 275
LIRTS
Sbjct: 177 LIRTS 181
>sp|Q8A1E0|ISPT_BACTN Isoprenyl transferase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=uppS
PE=3 SV=1
Length = 244
Score = 148 bits (373), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 119/189 (62%), Gaps = 4/189 (2%)
Query: 87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
E++ + +P+H+A+IMDGN RWA RG G++AG +++ ++E + G++ LT++
Sbjct: 5 EKIDKNRIPQHIAIIMDGNGRWAKQRGKERTYGHQAGAETVHKIIEDAARLGVKYLTLYT 64
Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
FS++NW RP+ EV LM+LL + E+E+ ++ IR +IGD KLP ++E + +E
Sbjct: 65 FSTENWNRPQEEVAALMNLLVDSI--EEETLMKNNIRFRIIGDIKKLPAEVQEGLSRCIE 122
Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
T NNT L++A+SYS ++++ +A ++IA K G I P +++ I L TN P
Sbjct: 123 HTANNTGTCLVLALSYSSRWEMTEAVRQIATLAKTGEISPEQITDEYITAHLTTNF--MP 180
Query: 267 YPDLLIRTS 275
PDLLIRT
Sbjct: 181 DPDLLIRTG 189
>sp|Q7VYC6|ISPT_BORPE Isoprenyl transferase OS=Bordetella pertussis (strain Tohama I /
ATCC BAA-589 / NCTC 13251) GN=uppS PE=3 SV=1
Length = 254
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 110/184 (59%), Gaps = 4/184 (2%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
+PRHVA+IMDGN RWA R LP +G+ GV +++ +VE C + G+R LT+FAFSS+NW
Sbjct: 14 DIPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENW 73
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV LM L ++ E + + +R+ V+GD S L+EL+ E T++N
Sbjct: 74 RRPADEVSLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHND 133
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLI-EPNDVSESLIEQELETNCTEFPYPDLL 271
R L VA +Y G++D++QA R ++ GL +P+ + E+ + + L P PDL
Sbjct: 134 RLHLTVAANYGGRWDILQAT-RAMLRADPGLAQDPDRIDEARLAEHLSMAWA--PEPDLF 190
Query: 272 IRTS 275
IRT
Sbjct: 191 IRTG 194
>sp|Q7WA56|ISPT_BORPA Isoprenyl transferase OS=Bordetella parapertussis (strain 12822 /
ATCC BAA-587 / NCTC 13253) GN=uppS PE=3 SV=2
Length = 254
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 110/184 (59%), Gaps = 4/184 (2%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
+PRHVA+IMDGN RWA R LP +G+ GV +++ +VE C + G+R LT+FAFSS+NW
Sbjct: 14 DIPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENW 73
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV LM L ++ E + + +R+ V+GD S L+EL+ E T++N
Sbjct: 74 RRPADEVSLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHND 133
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLI-EPNDVSESLIEQELETNCTEFPYPDLL 271
R L VA +Y G++D++QA R ++ GL +P+ + E+ + + L P PDL
Sbjct: 134 RLHLTVAANYGGRWDILQAT-RAMLRADPGLAQDPDRIDEARLAEHLSMAWA--PEPDLF 190
Query: 272 IRTS 275
IRT
Sbjct: 191 IRTG 194
>sp|Q7WJ90|ISPT_BORBR Isoprenyl transferase OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=uppS PE=3 SV=2
Length = 254
Score = 147 bits (372), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 110/184 (59%), Gaps = 4/184 (2%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
+PRHVA+IMDGN RWA R LP +G+ GV +++ +VE C + G+R LT+FAFSS+NW
Sbjct: 14 DIPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENW 73
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV LM L ++ E + + +R+ V+GD S L+EL+ E T++N
Sbjct: 74 RRPADEVSLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHND 133
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLI-EPNDVSESLIEQELETNCTEFPYPDLL 271
R L VA +Y G++D++QA R ++ GL +P+ + E+ + + L P PDL
Sbjct: 134 RLHLTVAANYGGRWDILQAT-RAMLRADPGLAQDPDRIDEARLAEHLSMAWA--PEPDLF 190
Query: 272 IRTS 275
IRT
Sbjct: 191 IRTG 194
>sp|Q5ZY69|UPPS_LEGPH Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=uppS PE=3 SV=1
Length = 238
Score = 147 bits (371), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P+H+AV+MDGN RWA RGLP G++AG+ S+K ++ C + I L++FAFSS+NW
Sbjct: 5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWS 64
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP EV FLM L +++E + + IR+ GD L + L++ + + TKNN +
Sbjct: 65 RPVTEVNFLMELFLEALRKEIDDLNQHGIRLKFTGDREPLSQILQKQMCDAEALTKNNQQ 124
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
L V V+Y G++D+V A +++ V DG + ++++E++ Q L+TN P PDL IR
Sbjct: 125 LILNVVVNYGGKWDIVTAARKLIRTVLDGKLAYDEINEAVFAQFLDTNGM--PEPDLFIR 182
Query: 274 TS 275
TS
Sbjct: 183 TS 184
>sp|Q9KPV6|UPPS_VIBCH Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=uppS PE=3 SV=2
Length = 250
Score = 146 bits (368), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/187 (38%), Positives = 115/187 (61%), Gaps = 2/187 (1%)
Query: 89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
L ++ +P+H+AVIMDGN RWA +G P G++ GV +++ + + GI+ +T+FAFS
Sbjct: 6 LSQDVLPKHIAVIMDGNGRWAKAQGKPRVFGHKNGVAAVRKTISTSARLGIKAVTLFAFS 65
Query: 149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
S+NW RPE EV LM L + + E + + +R+ VIGD S+ + L+ + + T
Sbjct: 66 SENWRRPEEEVGVLMELFMTVLSTEIKKLHKNNLRLRVIGDKSRFSERLQTKIAQAEQLT 125
Query: 209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP 268
+NT + +A +Y GQ+D++QA Q +A KV G ++P+D+ E + +Q L + P
Sbjct: 126 ASNTGMVVNIAANYGGQWDILQATQALAEKVTQGELQPSDIDEDVFKQHL--TMADLPDV 183
Query: 269 DLLIRTS 275
DLLIRTS
Sbjct: 184 DLLIRTS 190
>sp|Q8YHH3|ISPT_BRUME Isoprenyl transferase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=uppS PE=3 SV=1
Length = 254
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 112/183 (61%), Gaps = 2/183 (1%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
S PRH+A+IMDGN RWA RGLP +G+ AGV++L+ +V G+ LT+FAFSS+NW
Sbjct: 2 SDPRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENW 61
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV L+ LL+ ++ + R +R+++IG+ ++L + L+ T NT
Sbjct: 62 TRPSGEVSDLLGLLKLFIRRDLAELHRNNVRVNIIGERAELAANIRALLNEAESLTHRNT 121
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272
L++A +Y + ++V+A + +A V GL++P+ +S L+ L+T P PDL+I
Sbjct: 122 GLNLVIAFNYGSRDEIVRAVRSLARDVAAGLLDPSSISAELVSANLDT--AGIPDPDLII 179
Query: 273 RTS 275
RTS
Sbjct: 180 RTS 182
>sp|Q57CY1|ISPT_BRUAB Isoprenyl transferase OS=Brucella abortus biovar 1 (strain 9-941)
GN=uppS PE=3 SV=1
Length = 254
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 112/183 (61%), Gaps = 2/183 (1%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
S PRH+A+IMDGN RWA RGLP +G+ AGV++L+ +V G+ LT+FAFSS+NW
Sbjct: 2 SDPRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENW 61
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV L+ LL+ ++ + R +R+++IG+ ++L + L+ T NT
Sbjct: 62 TRPSGEVSDLLGLLKLFIRRDLAELHRNNVRVNIIGERAELAANIRALLNEAESLTHRNT 121
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272
L++A +Y + ++V+A + +A V GL++P+ +S L+ L+T P PDL+I
Sbjct: 122 GLNLVIAFNYGSRDEIVRAVRSLARDVAAGLLDPSSISAELVSANLDT--AGIPDPDLII 179
Query: 273 RTS 275
RTS
Sbjct: 180 RTS 182
>sp|Q58767|UPPS_METJA Tritrans,polycis-undecaprenyl-diphosphate synthase
(geranylgeranyl-diphosphate specific)
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=uppS PE=3
SV=1
Length = 280
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 120/193 (62%), Gaps = 2/193 (1%)
Query: 85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
L E + ++++P+HVA+IMDGNRR A + G G+ G + ++ ++ GI V+T+
Sbjct: 39 LEEAIDKDNLPKHVAIIMDGNRRAAEIYGKDRYYGHYLGAEKVREVLRWARDLGINVVTL 98
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKE--EKESFIRERIRISVIGDTSKLPKCLEELVI 202
+AFS++N+ RP+ EV+ LM L E E + E R +R+ IG + LPK +++ +
Sbjct: 99 YAFSTENFRRPKEEVDKLMELFEKKFYEIADDEEIHRYEVRVRAIGRINLLPKNVQKAIK 158
Query: 203 NVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNC 262
E TKN +F + +A++Y GQ +++ A ++IA KVK G IEP D+ + LI++ L T
Sbjct: 159 YAEERTKNYNKFFVNIAIAYGGQQEIIDAVKKIAEKVKRGEIEPEDIDKELIDKHLYTAN 218
Query: 263 TEFPYPDLLIRTS 275
FP PDL+IRTS
Sbjct: 219 LPFPNPDLIIRTS 231
>sp|Q8G0D9|ISPT_BRUSU Isoprenyl transferase OS=Brucella suis biovar 1 (strain 1330)
GN=uppS PE=3 SV=1
Length = 254
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 112/183 (61%), Gaps = 2/183 (1%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
S PRH+A+IMDGN RWA RGLP +G+ AGV++L+ +V G+ LT+FAFSS+NW
Sbjct: 2 SDPRHIAIIMDGNGRWAKARGLPRSAGHRAGVEALREIVRAAGDRGLGYLTLFAFSSENW 61
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV L+ LL+ ++ + R +R+++IG+ ++L + L+ T NT
Sbjct: 62 TRPSGEVSDLLGLLKLFIRRDLAELHRNNVRVNIIGERAELAADIRALLNEAESLTHRNT 121
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272
L++A +Y + ++V+A + +A V GL++P+ +S L+ L+T P PDL+I
Sbjct: 122 GLNLVIAFNYGSRDEIVRAVRSLARDVAAGLLDPSSISAELVSANLDT--AGIPDPDLII 179
Query: 273 RTS 275
RTS
Sbjct: 180 RTS 182
>sp|Q7MIG4|UPPS_VIBVY Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Vibrio
vulnificus (strain YJ016) GN=uppS PE=3 SV=1
Length = 251
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
+L ES+P+H+A+IMDGN RWA +G P G++ GV +++ + K I+ +T+FAF
Sbjct: 5 QLFTESLPKHIAIIMDGNGRWAKSKGQPRVFGHKKGVSAVRKTIAAASKLNIQAITLFAF 64
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
SS+NW RPE EV LM L + + E + + +R+ +IGDTS+ + L++ ++ E
Sbjct: 65 SSENWRRPEEEVGLLMELFITVLSSEVKKLHKNNLRLRIIGDTSRFSERLQKKIVEAQEL 124
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
T +NT + VA +Y G++D+ QA Q++A +V G + D++E I + L ++ P
Sbjct: 125 TASNTGMVINVAANYGGKWDITQAVQKVAQQVALGDLSAEDITEDDIAKHL--TMSDLPE 182
Query: 268 PDLLIRTS 275
DLLIRTS
Sbjct: 183 VDLLIRTS 190
>sp|Q8DBF7|UPPS_VIBVU Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Vibrio
vulnificus (strain CMCP6) GN=uppS PE=3 SV=1
Length = 251
Score = 145 bits (366), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
+L ES+P+H+A+IMDGN RWA +G P G++ GV +++ + K I+ +T+FAF
Sbjct: 5 QLFTESLPKHIAIIMDGNGRWAKSKGQPRVFGHKKGVSAVRKTIAAASKLNIQAITLFAF 64
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
SS+NW RPE EV LM L + + E + + +R+ +IGDTS+ + L++ ++ E
Sbjct: 65 SSENWRRPEEEVGLLMELFITVLSSEVKKLHKNNLRLRIIGDTSRFSERLQKKIVEAQEL 124
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
T +NT + VA +Y G++D+ QA Q++A +V G + D++E I + L ++ P
Sbjct: 125 TASNTGMVINVAANYGGKWDITQAVQKVAQQVALGDLSAEDITEDDIAKHL--TMSDLPE 182
Query: 268 PDLLIRTS 275
DLLIRTS
Sbjct: 183 VDLLIRTS 190
>sp|Q5X7N9|UPPS_LEGPA Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Legionella
pneumophila (strain Paris) GN=uppS PE=3 SV=1
Length = 238
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P+H+AV+MDGN RWA RGLP G++AG+ S+K ++ C + I L++FAFSS+NW
Sbjct: 5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWS 64
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP EV FLM L +++E + + IR+ GD L + L++ + + T+NN +
Sbjct: 65 RPVTEVNFLMELFLEALRKEIDDLNQHGIRLKFTGDREPLSQVLQKQMYDAEALTRNNQQ 124
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
L V V+Y G++D+V A +++ V DG + ++++E++ Q L+T + P PDL IR
Sbjct: 125 LILNVVVNYGGKWDIVTAAKKLIHSVLDGKLACDEINEAVFAQFLDT--SGMPEPDLFIR 182
Query: 274 TS 275
TS
Sbjct: 183 TS 184
>sp|Q5WFT2|ISPT_BACSK Isoprenyl transferase OS=Bacillus clausii (strain KSM-K16) GN=uppS
PE=3 SV=1
Length = 257
Score = 145 bits (365), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 112/184 (60%), Gaps = 2/184 (1%)
Query: 92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
+++PRHVA+IMDGN RWA +GLP +G+ G+K++ +V I +LT++AFS++N
Sbjct: 26 QNIPRHVAIIMDGNGRWAKEKGLPRIAGHREGMKTVNKIVRAANTLNIEILTLYAFSTEN 85
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
W RP+ EVEFL+ L E +K E + I E +++ ++G LP V +E TK+N
Sbjct: 86 WKRPKAEVEFLLKLPERYLKSELPTLIEENVQVRLMGSKDGLPSYTLHAVDEAIEKTKHN 145
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL 271
T L A++Y +++L A Q+IA KV+ G + P ++E I L +N PDLL
Sbjct: 146 TGLILNFALNYGSRFELTSAMQQIAKKVQQGELMPEHITEETISAHLMSN--HLRDPDLL 203
Query: 272 IRTS 275
IRTS
Sbjct: 204 IRTS 207
>sp|Q5WZ40|UPPS_LEGPL Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Legionella
pneumophila (strain Lens) GN=uppS PE=3 SV=1
Length = 238
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 113/182 (62%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P+H+AV+MDGN RWA RGLP G++AG+ S+K ++ C + I L++FAFSS+NW
Sbjct: 5 LPQHIAVVMDGNGRWAESRGLPRVEGHKAGLDSVKKIINCCLEKKISCLSLFAFSSENWS 64
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP EV FLM L +++E + + IR+ GD L + L++ + + TKNN +
Sbjct: 65 RPVTEVNFLMELFLEALRKEIDDLNQHGIRLKFTGDREPLSQVLQKQMSDAEALTKNNQQ 124
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
L V V+Y G++D+V A +++ V DG + ++++E++ Q L+T P PDL IR
Sbjct: 125 LILNVVVNYGGKWDIVTAARKLIRTVLDGKLAYDEINEAVFAQFLDTKG--MPEPDLFIR 182
Query: 274 TS 275
TS
Sbjct: 183 TS 184
>sp|Q5E3E3|UPPS_VIBF1 Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=uppS PE=3 SV=1
Length = 257
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 116/189 (61%), Gaps = 2/189 (1%)
Query: 87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
E L + +P+H+AVIMDGN RWA +G P G++AGV +++ + K GI +T+FA
Sbjct: 8 EFLSLDVLPKHIAVIMDGNGRWAKAQGKPRVFGHKAGVDAVRKTISAASKLGINAITLFA 67
Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
FSS+NW RPE EV LM L + + E + + I++ +IG+TS+ L++ ++
Sbjct: 68 FSSENWRRPEEEVSVLMELFITVLSREVKRLHKNNIQLRIIGETSQFSSRLQKKIVEAET 127
Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
T NT L VA +Y G++D+ QA +R+A +V+ G ++ +D+ E LI +L ++ P
Sbjct: 128 LTSENTGLVLNVAANYGGKWDITQAVRRLAYQVERGNLQADDIDEDLIASKL--TMSDLP 185
Query: 267 YPDLLIRTS 275
DL+IRTS
Sbjct: 186 EVDLMIRTS 194
>sp|Q5L0J8|ISPT_GEOKA Isoprenyl transferase OS=Geobacillus kaustophilus (strain HTA426)
GN=uppS PE=3 SV=1
Length = 257
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 113/195 (57%), Gaps = 2/195 (1%)
Query: 81 DAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIR 140
D P EE+ R MP HVA+IMDGN RWA R LP +G+ G++ ++ + + GI+
Sbjct: 12 DVPVTKEEVLRHPMPNHVAIIMDGNGRWAKKRALPRAAGHYEGMQVVRKITRFANELGIQ 71
Query: 141 VLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEEL 200
+L+++AFS++NW RP+ EV++LM L E + + E +++ VIG T LP
Sbjct: 72 ILSLYAFSTENWKRPKSEVDYLMKLPEQFLTTFLPELVAENVKVQVIGHTEALPDHTRRA 131
Query: 201 VINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELET 260
V V+ T NT L A++Y + ++ A ++IA V+ G++ P D++E LI L T
Sbjct: 132 VEKAVKETSGNTGLVLNFALNYGSRAEIAAAVKQIAKDVERGMLAPEDITEPLISSYLMT 191
Query: 261 NCTEFPYPDLLIRTS 275
+ PDLLIRTS
Sbjct: 192 SG--LADPDLLIRTS 204
>sp|Q8RA26|ISPT_THETN Isoprenyl transferase OS=Thermoanaerobacter tengcongensis (strain
DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=uppS PE=3
SV=1
Length = 247
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 120/191 (62%), Gaps = 2/191 (1%)
Query: 85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
L ++L + +P+HV +IMDGN RWA RG+P G++AGV +++ ++ C + GI+ LT+
Sbjct: 9 LIKKLDKTRLPQHVGIIMDGNGRWAQKRGMPRVYGHKAGVNAVREVIRSCRELGIKYLTL 68
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
+AFS++NW RP+ EV+FLM LL + +E + + + + IGD S+LP+ + +
Sbjct: 69 YAFSTENWKRPKEEVDFLMDLLVEYLSKEVDELNKNNVVVKFIGDISRLPEKCQIEIEKA 128
Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
+ T+ NT + +A++Y G+ ++V+A Q I KV + + P D++E I Q L T
Sbjct: 129 QKLTEKNTGLVVNIALNYGGRDEIVKATQNICKKVLNRELSPEDITEDTITQHLYTASQ- 187
Query: 265 FPYPDLLIRTS 275
P PDL+IRTS
Sbjct: 188 -PDPDLIIRTS 197
>sp|P60482|ISPT_GEOSL Isoprenyl transferase OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=uppS PE=3 SV=1
Length = 246
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 113/184 (61%), Gaps = 2/184 (1%)
Query: 92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
+ +PRH+A+IMDGN RWA R L G++ GV++++ +VE C + GI LT+FAFS++N
Sbjct: 7 DKLPRHLAIIMDGNGRWAQERMLTRIIGHQKGVETVRIIVEECSRLGIGYLTLFAFSAEN 66
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
W RP+ EV+ LM+LL+ + E IR +VIG+ +LP + + V ++ T N
Sbjct: 67 WLRPKTEVKALMALLKKYIASEAARMDANNIRFNVIGNRDELPPDVNKAVQGAIDRTSGN 126
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL 271
T L +A+SY + +++ A RIA + G+++ +D+SE+ L T+ P PD L
Sbjct: 127 TGMILTLALSYGARQEIMTAATRIASDIASGVLKADDLSETAFASYLFTSG--LPDPDFL 184
Query: 272 IRTS 275
IRTS
Sbjct: 185 IRTS 188
>sp|Q6FCH1|UPPS_ACIAD Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Acinetobacter
sp. (strain ADP1) GN=uppS PE=3 SV=1
Length = 249
Score = 144 bits (362), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 106/182 (58%), Gaps = 2/182 (1%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P+HVA+IMDGN R+A + G G+ G SL +VE CC G++ LTVFAFSS+NW
Sbjct: 9 LPKHVAIIMDGNNRFAKKNQMQKGDGHREGKNSLDPIVEHCCTRGVQALTVFAFSSENWN 68
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP EV+ LM LLE + E+ + I + IGD SKL + L +L+ + T + T
Sbjct: 69 RPAFEVDLLMKLLEEAIHEQLPRMRKFNIALRFIGDRSKLSEHLTDLMTHAENETAHFTS 128
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
L +A+SY G +D+ A ++IA V DG+++ + L + + N + P DLLIR
Sbjct: 129 MTLTIAISYGGMWDITDAAKQIAKDVSDGIVDIEQIDTHLFGRYVSLN--QLPPVDLLIR 186
Query: 274 TS 275
T
Sbjct: 187 TG 188
>sp|Q7VM20|UPPS_HAEDU Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific) OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=uppS PE=3 SV=1
Length = 242
Score = 143 bits (361), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 111/183 (60%), Gaps = 2/183 (1%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
+MP+HVA+IMDGN RWA +G G++ GV +++ V K+GI+VLT++AFSS+NW
Sbjct: 11 NMPQHVAIIMDGNGRWAKKQGKLRVFGHQNGVNAVRAAVHFAAKYGIKVLTLYAFSSENW 70
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP EV LMSL + E + IR++++GD ++ L++ +I T +NT
Sbjct: 71 NRPATEVSALMSLFIQALNTEVSKLHKHNIRLNILGDKTRFSDSLQKRIIESETLTAHNT 130
Query: 213 RFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272
R L +A +Y +D+ +A +++A KVK G I D++ +++ L T E P DLLI
Sbjct: 131 RLTLNIAANYGSHWDITEATKKLAEKVKLGKISVTDITPEKVQRALVT--AEQPPVDLLI 188
Query: 273 RTS 275
RTS
Sbjct: 189 RTS 191
>sp|Q6LN28|UPPS_PHOPR Ditrans,polycis-undecaprenyl-diphosphate synthase
((2E,6E)-farnesyl-diphosphate specific)
OS=Photobacterium profundum GN=uppS PE=3 SV=1
Length = 254
Score = 142 bits (359), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 116/188 (61%), Gaps = 2/188 (1%)
Query: 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAF 147
EL E +P+HVAVIMDGN RWA +G G++AGV++++ V + G++VLT+FAF
Sbjct: 9 ELSAECLPKHVAVIMDGNGRWAKAKGKARVFGHKAGVEAVRKSVTTANRLGVKVLTLFAF 68
Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
SS+NW RPE EV LM L + + E + + I++ +IGD S + L+ +
Sbjct: 69 SSENWRRPEDEVSLLMELFMTVLTREVKRLHKNNIQLRIIGDKSGFSERLQRKIATSEAL 128
Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPY 267
T NNT L +A +Y GQ+D++QA +++A+++ + + +D++E ++ + T + P
Sbjct: 129 TANNTGLVLNIAANYGGQWDILQATKKLAVQIAEQGLTASDITEDMLSAGMST--ADLPD 186
Query: 268 PDLLIRTS 275
DL+IRTS
Sbjct: 187 VDLMIRTS 194
>sp|Q8UFL9|ISPT_AGRT5 Isoprenyl transferase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=uppS PE=3 SV=1
Length = 247
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 2/185 (1%)
Query: 91 RESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSD 150
R S+P HVA+IMDGN RWA RGLP G+ GV++++ V GI LT+FAFSS+
Sbjct: 6 RSSIPEHVAIIMDGNGRWAKQRGLPRVMGHRRGVEAVRETVRAAGDCGISYLTLFAFSSE 65
Query: 151 NWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKN 210
NW RPE EV LM LL++ ++ + RE +R+ +IGD L + L+ + T
Sbjct: 66 NWRRPESEVSDLMGLLKAFIRRDLAELHRENVRVRIIGDRQGLKTDIRSLLEEAEQMTAG 125
Query: 211 NTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDL 270
NT+ L++A +Y + ++ +A IA V +G + + ++ +I L+T+ P PDL
Sbjct: 126 NTKLTLVIAFNYGSRDEITRATASIARDVAEGRLSADAITPEMISSRLDTSG--MPDPDL 183
Query: 271 LIRTS 275
+IRTS
Sbjct: 184 IIRTS 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,013,605
Number of Sequences: 539616
Number of extensions: 3996248
Number of successful extensions: 14184
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 13823
Number of HSP's gapped (non-prelim): 253
length of query: 275
length of database: 191,569,459
effective HSP length: 116
effective length of query: 159
effective length of database: 128,974,003
effective search space: 20506866477
effective search space used: 20506866477
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)