Query 044091
Match_columns 275
No_of_seqs 141 out of 1103
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 11:21:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044091.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044091hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14832 undecaprenyl pyrophos 100.0 1.2E-65 2.7E-70 468.4 22.1 188 86-275 10-197 (253)
2 PRK14837 undecaprenyl pyrophos 100.0 2.7E-65 6E-70 460.3 22.2 180 90-275 2-181 (230)
3 PRK14840 undecaprenyl pyrophos 100.0 4.2E-65 9.1E-70 464.2 23.0 191 83-275 7-201 (250)
4 PRK14842 undecaprenyl pyrophos 100.0 5.1E-65 1.1E-69 461.7 23.3 185 89-275 3-188 (241)
5 TIGR00055 uppS undecaprenyl di 100.0 3.5E-65 7.5E-70 459.0 22.0 178 96-275 1-178 (226)
6 PRK14831 undecaprenyl pyrophos 100.0 4.5E-65 9.7E-70 464.4 22.4 192 82-275 8-199 (249)
7 PRK14829 undecaprenyl pyrophos 100.0 4.2E-65 9.1E-70 463.2 22.0 187 87-275 7-193 (243)
8 PRK14834 undecaprenyl pyrophos 100.0 2.2E-64 4.7E-69 459.6 23.3 186 88-275 8-193 (249)
9 PRK14838 undecaprenyl pyrophos 100.0 1.7E-64 3.8E-69 458.6 22.0 183 89-275 5-187 (242)
10 PRK14827 undecaprenyl pyrophos 100.0 1.6E-64 3.5E-69 469.5 21.7 193 81-275 54-246 (296)
11 PRK14836 undecaprenyl pyrophos 100.0 1.5E-64 3.2E-69 461.8 21.1 188 86-275 6-193 (253)
12 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 2.1E-64 4.7E-69 453.0 21.8 179 95-275 1-179 (221)
13 PRK14830 undecaprenyl pyrophos 100.0 6.2E-64 1.3E-68 457.4 22.1 187 87-275 15-201 (251)
14 PRK14841 undecaprenyl pyrophos 100.0 1.5E-63 3.2E-68 450.5 22.7 179 93-275 2-180 (233)
15 PRK14833 undecaprenyl pyrophos 100.0 4E-63 8.7E-68 447.6 22.2 181 92-275 2-182 (233)
16 PTZ00349 dehydrodolichyl dipho 100.0 3.9E-63 8.5E-68 462.8 22.3 192 82-275 7-263 (322)
17 PRK14835 undecaprenyl pyrophos 100.0 6E-63 1.3E-67 455.6 22.9 193 81-275 28-226 (275)
18 PRK14828 undecaprenyl pyrophos 100.0 4.6E-62 9.9E-67 446.2 23.6 189 82-275 14-207 (256)
19 PRK14839 undecaprenyl pyrophos 100.0 1.2E-61 2.6E-66 438.3 20.8 172 93-275 8-179 (239)
20 KOG1602 Cis-prenyltransferase 100.0 5.2E-61 1.1E-65 433.9 22.2 185 88-275 30-217 (271)
21 COG0020 UppS Undecaprenyl pyro 100.0 7.6E-60 1.6E-64 428.8 21.5 181 93-275 15-195 (245)
22 PRK10240 undecaprenyl pyrophos 100.0 1.1E-58 2.3E-63 417.8 20.7 172 102-275 1-172 (229)
23 PF01255 Prenyltransf: Putativ 100.0 2.9E-58 6.3E-63 413.5 16.9 172 101-275 1-174 (223)
24 KOG2818 Predicted undecaprenyl 99.0 4.2E-10 9.2E-15 103.1 5.3 154 89-275 59-215 (263)
25 PF01261 AP_endonuc_2: Xylose 87.9 3.4 7.4E-05 34.8 8.3 117 120-238 66-185 (213)
26 PRK09856 fructoselysine 3-epim 84.9 16 0.00034 32.9 11.4 114 120-237 85-201 (275)
27 PRK13210 putative L-xylulose 5 84.6 11 0.00025 33.9 10.4 66 119-188 88-153 (284)
28 cd00950 DHDPS Dihydrodipicolin 79.9 16 0.00034 33.6 9.6 105 122-238 18-124 (284)
29 TIGR03249 KdgD 5-dehydro-4-deo 79.4 12 0.00027 34.8 8.8 124 122-258 23-152 (296)
30 TIGR00674 dapA dihydrodipicoli 77.2 18 0.00039 33.4 9.2 124 122-257 16-148 (285)
31 TIGR00629 uvde UV damage endon 76.9 49 0.0011 31.7 12.1 110 122-234 49-177 (312)
32 PRK13209 L-xylulose 5-phosphat 75.1 45 0.00098 30.1 11.1 91 119-214 93-184 (283)
33 PLN02417 dihydrodipicolinate s 74.7 37 0.0008 31.4 10.5 104 122-238 19-125 (280)
34 PF00701 DHDPS: Dihydrodipicol 73.9 70 0.0015 29.4 12.1 103 122-238 19-125 (289)
35 cd00019 AP2Ec AP endonuclease 72.9 40 0.00087 30.5 10.2 66 118-188 78-143 (279)
36 PRK03170 dihydrodipicolinate s 72.5 24 0.00052 32.6 8.7 106 122-239 19-126 (292)
37 PF03851 UvdE: UV-endonuclease 72.2 44 0.00096 31.5 10.4 106 121-230 41-164 (275)
38 cd00951 KDGDH 5-dehydro-4-deox 71.2 38 0.00082 31.4 9.8 122 122-257 18-146 (289)
39 PF01661 Macro: Macro domain; 70.7 34 0.00074 26.4 8.0 64 93-163 52-118 (118)
40 TIGR00542 hxl6Piso_put hexulos 69.5 36 0.00079 30.9 9.1 65 119-188 88-153 (279)
41 cd03770 SR_TndX_transposase Se 69.3 44 0.00095 27.5 8.8 72 125-209 22-96 (140)
42 cd00408 DHDPS-like Dihydrodipi 69.1 46 0.001 30.3 9.7 105 122-238 15-121 (281)
43 TIGR02313 HpaI-NOT-DapA 2,4-di 68.1 58 0.0013 30.4 10.3 106 122-239 18-125 (294)
44 PF02739 5_3_exonuc_N: 5'-3' e 67.8 31 0.00068 29.8 7.9 83 93-192 49-137 (169)
45 PF13788 DUF4180: Domain of un 66.4 48 0.001 27.3 8.2 84 122-218 19-102 (113)
46 cd00954 NAL N-Acetylneuraminic 66.3 53 0.0012 30.4 9.6 105 122-239 18-126 (288)
47 smart00633 Glyco_10 Glycosyl h 62.3 1.2E+02 0.0026 27.4 11.5 33 122-154 13-48 (254)
48 PRK03620 5-dehydro-4-deoxygluc 62.0 85 0.0018 29.4 10.2 105 122-239 25-131 (303)
49 COG1856 Uncharacterized homolo 61.6 29 0.00064 32.3 6.7 106 123-239 96-218 (275)
50 TIGR00330 glpX fructose-1,6-bi 60.4 1.1E+02 0.0023 29.6 10.5 106 134-272 148-266 (321)
51 TIGR03586 PseI pseudaminic aci 59.3 81 0.0018 30.4 9.7 88 119-237 71-158 (327)
52 cd00953 KDG_aldolase KDG (2-ke 56.0 1.1E+02 0.0024 28.2 9.8 102 121-237 16-120 (279)
53 PRK04147 N-acetylneuraminate l 54.7 91 0.002 28.9 9.0 121 123-257 22-154 (293)
54 cd00952 CHBPH_aldolase Trans-o 54.3 82 0.0018 29.7 8.7 106 122-239 26-133 (309)
55 cd01516 FBPase_glpX Bacterial 53.8 1.7E+02 0.0037 28.2 10.6 105 134-272 148-254 (309)
56 PRK12415 fructose 1,6-bisphosp 51.7 1.5E+02 0.0032 28.8 9.9 105 134-272 149-255 (322)
57 PRK09482 flap endonuclease-lik 51.3 48 0.001 30.8 6.5 76 83-170 36-119 (256)
58 PRK02842 light-independent pro 51.2 2.5E+02 0.0054 27.6 13.2 77 180-272 289-365 (427)
59 cd00008 53EXOc 5'-3' exonuclea 49.7 56 0.0012 29.7 6.6 74 84-168 40-118 (240)
60 TIGR03569 NeuB_NnaB N-acetylne 48.7 1.8E+02 0.004 28.0 10.2 85 121-236 72-156 (329)
61 PRK09479 glpX fructose 1,6-bis 47.4 2.3E+02 0.005 27.5 10.4 105 134-272 151-257 (319)
62 cd02905 Macro_GDAP2_like Macro 46.5 64 0.0014 27.0 6.0 39 125-163 94-132 (140)
63 TIGR00683 nanA N-acetylneurami 46.1 1.8E+02 0.0039 27.0 9.6 123 122-257 18-152 (290)
64 PRK02308 uvsE putative UV dama 45.0 1.1E+02 0.0025 28.9 8.1 98 122-230 45-166 (303)
65 cd07947 DRE_TIM_Re_CS Clostrid 44.7 96 0.0021 29.0 7.5 85 132-223 81-174 (279)
66 PF10566 Glyco_hydro_97: Glyco 44.7 1.7E+02 0.0037 27.5 9.1 105 121-244 28-151 (273)
67 PRK13745 anaerobic sulfatase-m 43.8 2.5E+02 0.0055 27.3 10.6 95 122-233 48-143 (412)
68 cd01967 Nitrogenase_MoFe_alpha 42.8 2.9E+02 0.0063 26.5 10.8 45 98-145 189-238 (406)
69 KOG0207 Cation transport ATPas 42.5 32 0.00069 37.6 4.3 86 101-190 672-794 (951)
70 cd00959 DeoC 2-deoxyribose-5-p 42.3 2.3E+02 0.0049 24.8 9.2 97 122-239 14-114 (203)
71 PRK12388 fructose-1,6-bisphosp 42.0 2.4E+02 0.0053 27.3 9.7 73 134-235 148-220 (321)
72 PF07736 CM_1: Chorismate muta 42.0 26 0.00056 29.2 2.8 32 218-249 8-40 (118)
73 PF13302 Acetyltransf_3: Acety 41.6 66 0.0014 25.0 5.1 34 117-151 95-129 (142)
74 TIGR03551 F420_cofH 7,8-dideme 41.2 3.2E+02 0.0069 25.9 12.7 116 119-237 67-219 (343)
75 PRK02551 flavoprotein NrdI; Pr 40.3 87 0.0019 27.0 5.9 56 97-171 96-151 (154)
76 cd04120 Rab12 Rab12 subfamily. 40.1 1.2E+02 0.0026 26.5 7.0 104 142-257 75-178 (202)
77 PF08901 DUF1847: Protein of u 40.0 16 0.00035 31.8 1.4 45 103-149 20-64 (157)
78 cd02908 Macro_Appr_pase_like M 40.0 1.9E+02 0.0041 24.4 8.1 48 124-171 91-139 (165)
79 PRK13397 3-deoxy-7-phosphohept 39.3 3.2E+02 0.007 25.4 10.3 84 122-237 63-147 (250)
80 COG1082 IolE Sugar phosphate i 39.0 2.5E+02 0.0054 24.8 9.0 113 119-237 78-197 (274)
81 COG4294 Uve UV damage repair e 38.2 3.9E+02 0.0084 26.0 12.1 113 119-234 67-195 (347)
82 PF07894 DUF1669: Protein of u 38.1 90 0.002 29.7 6.1 68 96-191 148-215 (284)
83 COG0329 DapA Dihydrodipicolina 38.1 3.5E+02 0.0075 25.4 10.7 106 122-239 22-129 (299)
84 KOG0086 GTPase Rab4, small G p 37.2 3E+02 0.0065 24.4 11.7 118 121-250 65-185 (214)
85 smart00857 Resolvase Resolvase 36.5 1.1E+02 0.0023 24.7 5.8 51 126-189 53-103 (148)
86 PRK05799 coproporphyrinogen II 36.1 1.4E+02 0.0029 28.6 7.2 29 122-150 163-191 (374)
87 cd02907 Macro_Af1521_BAL_like 36.1 2.2E+02 0.0047 24.2 7.9 48 124-171 98-146 (175)
88 PRK08508 biotin synthase; Prov 35.2 1.9E+02 0.004 26.8 7.8 41 123-166 135-175 (279)
89 PRK08207 coproporphyrinogen II 34.8 1.3E+02 0.0027 30.6 7.0 51 122-172 333-394 (488)
90 TIGR03521 GldG gliding-associa 34.8 3.9E+02 0.0085 27.3 10.7 51 140-196 48-98 (552)
91 KOG2368 Hydroxymethylglutaryl- 34.2 80 0.0017 29.6 5.0 67 132-206 100-180 (316)
92 PRK09989 hypothetical protein; 33.9 3.4E+02 0.0073 24.2 9.1 63 122-188 82-144 (258)
93 cd02904 Macro_H2A_like Macro d 33.7 1.5E+02 0.0033 26.2 6.6 48 124-171 113-161 (186)
94 cd02903 Macro_BAL_like Macro d 33.6 97 0.0021 25.5 5.1 40 125-164 92-131 (137)
95 TIGR01861 ANFD nitrogenase iro 33.6 5.4E+02 0.012 26.3 12.5 157 100-273 233-404 (513)
96 cd03770 SR_TndX_transposase Se 33.6 2.2E+02 0.0047 23.3 7.2 53 121-189 54-107 (140)
97 TIGR00063 folE GTP cyclohydrol 33.5 38 0.00082 30.0 2.7 25 96-135 82-106 (180)
98 PLN03044 GTP cyclohydrolase I; 33.5 43 0.00093 29.9 3.1 59 96-189 87-145 (188)
99 CHL00073 chlN photochlorophyll 33.2 5.3E+02 0.011 26.1 14.8 78 180-272 313-396 (457)
100 cd00642 GTP_cyclohydro1 GTP cy 33.1 37 0.0008 30.2 2.6 59 96-190 87-145 (185)
101 TIGR03234 OH-pyruv-isom hydrox 32.7 3.5E+02 0.0076 23.9 10.5 62 122-187 81-142 (254)
102 PRK09347 folE GTP cyclohydrola 32.4 43 0.00093 29.8 2.9 26 96-136 90-115 (188)
103 PRK05481 lipoyl synthase; Prov 31.2 1.7E+02 0.0036 27.4 6.8 31 119-149 205-235 (289)
104 TIGR00538 hemN oxygen-independ 31.1 1.4E+02 0.0029 29.6 6.5 50 122-171 215-276 (455)
105 PRK13347 coproporphyrinogen II 30.7 1.3E+02 0.0029 29.8 6.4 50 122-171 216-277 (453)
106 PRK09997 hydroxypyruvate isome 30.3 2E+02 0.0042 25.8 6.9 60 124-187 84-143 (258)
107 PRK07238 bifunctional RNase H/ 30.2 2.7E+02 0.0058 26.6 8.2 46 117-162 43-95 (372)
108 cd07948 DRE_TIM_HCS Saccharomy 30.0 4.4E+02 0.0096 24.2 10.7 96 131-237 77-181 (262)
109 PF02585 PIG-L: GlcNAc-PI de-N 29.8 2.7E+02 0.0058 21.9 7.0 56 93-154 25-82 (128)
110 PRK13505 formate--tetrahydrofo 29.0 5.5E+02 0.012 26.8 10.5 100 115-240 349-457 (557)
111 cd07945 DRE_TIM_CMS Leptospira 28.7 4.6E+02 0.01 24.4 9.3 97 130-237 79-187 (280)
112 PRK12928 lipoyl synthase; Prov 28.7 79 0.0017 29.7 4.2 31 119-149 213-243 (290)
113 PRK05301 pyrroloquinoline quin 28.2 4.6E+02 0.01 24.9 9.5 66 122-202 46-111 (378)
114 KOG0013 Uncharacterized conser 28.1 96 0.0021 28.5 4.4 24 219-242 55-78 (231)
115 PF06962 rRNA_methylase: Putat 28.0 90 0.002 26.5 4.0 38 118-155 94-131 (140)
116 smart00518 AP2Ec AP endonuclea 27.9 4.4E+02 0.0095 23.5 13.0 27 127-153 12-38 (273)
117 PF01227 GTP_cyclohydroI: GTP 27.7 58 0.0012 28.8 2.9 26 96-136 82-107 (179)
118 PRK12677 xylose isomerase; Pro 27.7 5.9E+02 0.013 24.9 12.4 55 126-187 32-86 (384)
119 PF13420 Acetyltransf_4: Acety 27.6 1.4E+02 0.0031 23.7 5.1 31 119-149 90-121 (155)
120 PF11977 RNase_Zc3h12a: Zc3h12 27.6 53 0.0012 27.7 2.6 44 100-149 5-49 (155)
121 PRK04143 hypothetical protein; 27.3 2.1E+02 0.0046 26.7 6.7 47 125-171 187-234 (264)
122 PLN03230 acetyl-coenzyme A car 27.0 1.2E+02 0.0027 30.4 5.3 31 119-149 202-232 (431)
123 PF02472 ExbD: Biopolymer tran 27.0 1.6E+02 0.0035 23.2 5.2 55 74-144 71-125 (130)
124 COG1564 THI80 Thiamine pyropho 27.0 78 0.0017 28.8 3.7 46 186-231 47-110 (212)
125 cd01461 vWA_interalpha_trypsin 27.0 2.4E+02 0.0053 22.7 6.5 46 94-150 1-48 (171)
126 smart00857 Resolvase Resolvase 26.9 3.3E+02 0.0071 21.7 8.6 74 125-211 19-95 (148)
127 CHL00200 trpA tryptophan synth 26.9 3.6E+02 0.0078 25.0 8.1 42 187-232 180-221 (263)
128 cd02906 Macro_1 Macro domain, 26.9 1.6E+02 0.0034 24.7 5.3 40 124-163 103-142 (147)
129 TIGR02635 RhaI_grampos L-rhamn 26.3 3.9E+02 0.0084 26.3 8.6 62 122-186 113-175 (378)
130 PRK14976 5'-3' exonuclease; Pr 26.1 1.8E+02 0.004 27.2 6.1 76 83-170 44-125 (281)
131 PRK06267 hypothetical protein; 26.0 2.4E+02 0.0052 27.0 7.1 42 108-149 161-206 (350)
132 COG0302 FolE GTP cyclohydrolas 26.0 61 0.0013 29.2 2.7 58 96-189 96-153 (195)
133 PTZ00484 GTP cyclohydrolase I; 26.0 57 0.0012 30.6 2.6 26 96-136 161-186 (259)
134 PF14871 GHL6: Hypothetical gl 25.9 72 0.0016 26.5 3.0 28 124-151 43-70 (132)
135 COG4887 Uncharacterized metal- 25.4 1.2E+02 0.0026 26.6 4.3 44 123-171 50-93 (191)
136 PRK12606 GTP cyclohydrolase I; 25.3 67 0.0015 29.0 2.9 25 96-135 102-126 (201)
137 PRK08599 coproporphyrinogen II 25.1 2.8E+02 0.0061 26.5 7.4 29 122-150 164-192 (377)
138 PF03102 NeuB: NeuB family; I 25.0 4.6E+02 0.0099 24.1 8.4 85 120-235 51-135 (241)
139 cd01968 Nitrogenase_NifE_I Nit 24.9 6.4E+02 0.014 24.4 12.5 78 180-274 286-363 (410)
140 cd03330 Macro_2 Macro domain, 24.8 2E+02 0.0043 23.2 5.5 41 125-165 90-130 (133)
141 PF07972 Flavodoxin_NdrI: NrdI 24.5 98 0.0021 25.6 3.5 40 96-149 73-112 (122)
142 TIGR01361 DAHP_synth_Bsub phos 24.5 5.6E+02 0.012 23.6 10.1 22 123-144 74-95 (260)
143 TIGR01796 CM_mono_aroH monofun 24.5 57 0.0012 27.1 2.1 30 220-249 10-40 (117)
144 PLN02706 glucosamine 6-phospha 24.4 1E+02 0.0022 24.7 3.6 32 119-151 99-130 (150)
145 PRK07094 biotin synthase; Prov 24.3 1.9E+02 0.0041 26.9 5.9 64 107-170 172-247 (323)
146 cd06831 PLPDE_III_ODC_like_AZI 24.2 6.7E+02 0.015 24.4 10.3 27 129-164 93-119 (394)
147 cd02185 AroH Chorismate mutase 24.2 58 0.0013 27.0 2.1 30 220-249 10-40 (117)
148 TIGR01282 nifD nitrogenase mol 24.1 5.5E+02 0.012 25.7 9.4 150 102-273 240-410 (466)
149 TIGR02354 thiF_fam2 thiamine b 23.8 83 0.0018 27.8 3.2 28 129-156 35-65 (200)
150 cd04301 NAT_SF N-Acyltransfera 23.8 92 0.002 19.5 2.7 26 119-144 39-64 (65)
151 PF04430 DUF498: Protein of un 23.7 51 0.0011 26.2 1.7 24 245-272 35-58 (110)
152 PF04055 Radical_SAM: Radical 23.7 2.4E+02 0.0053 21.9 5.7 61 95-165 101-165 (166)
153 PRK12319 acetyl-CoA carboxylas 23.7 1.1E+02 0.0023 28.5 4.0 31 120-150 80-110 (256)
154 TIGR00238 KamA family protein. 23.6 5.4E+02 0.012 24.5 8.9 41 124-166 144-185 (331)
155 TIGR00593 pola DNA polymerase 23.6 1.9E+02 0.0041 31.7 6.4 75 83-169 38-118 (887)
156 TIGR01279 DPOR_bchN light-inde 23.5 7E+02 0.015 24.3 13.4 75 180-272 273-348 (407)
157 TIGR03581 EF_0839 conserved hy 23.1 2.3E+02 0.005 26.2 5.9 46 122-167 186-235 (236)
158 TIGR00639 PurN phosphoribosylg 23.1 3.4E+02 0.0074 23.8 6.9 22 82-103 14-36 (190)
159 COG3946 VirJ Type IV secretory 23.0 8.1E+02 0.018 24.9 11.4 119 96-235 260-394 (456)
160 TIGR01862 N2-ase-Ialpha nitrog 22.9 7.5E+02 0.016 24.5 11.9 78 180-274 316-394 (443)
161 cd01457 vWA_ORF176_type VWA OR 22.8 2.9E+02 0.0062 23.7 6.4 52 95-150 2-57 (199)
162 KOG4388 Hormone-sensitive lipa 22.8 2E+02 0.0044 30.6 6.1 58 130-191 419-478 (880)
163 COG0678 AHP1 Peroxiredoxin [Po 22.8 54 0.0012 28.7 1.7 20 97-116 99-118 (165)
164 smart00518 AP2Ec AP endonuclea 22.7 5.5E+02 0.012 22.9 11.1 61 119-186 78-138 (273)
165 cd00945 Aldolase_Class_I Class 22.7 4.4E+02 0.0095 21.7 8.3 24 123-146 11-34 (201)
166 TIGR00513 accA acetyl-CoA carb 22.7 1.1E+02 0.0025 29.4 4.1 30 120-149 133-162 (316)
167 PHA00439 exonuclease 22.5 3.6E+02 0.0077 25.7 7.3 92 83-192 50-149 (286)
168 TIGR02629 L_rham_iso_rhiz L-rh 22.3 3.4E+02 0.0074 27.2 7.3 55 93-147 88-172 (412)
169 smart00729 Elp3 Elongator prot 22.1 1.5E+02 0.0033 24.3 4.4 63 97-167 113-177 (216)
170 PF09314 DUF1972: Domain of un 22.0 2.3E+02 0.0051 25.0 5.7 42 96-149 2-44 (185)
171 TIGR00539 hemN_rel putative ox 21.8 2.8E+02 0.0061 26.4 6.6 30 122-151 164-193 (360)
172 PF00682 HMGL-like: HMGL-like 21.6 4.7E+02 0.01 22.9 7.7 97 96-210 82-181 (237)
173 PRK06294 coproporphyrinogen II 21.6 2.9E+02 0.0063 26.6 6.7 50 122-171 167-229 (370)
174 PRK11382 frlB fructoselysine-6 21.4 3.9E+02 0.0084 25.3 7.4 87 124-237 29-117 (340)
175 COG0369 CysJ Sulfite reductase 21.3 3.6E+02 0.0079 28.2 7.7 68 134-207 493-560 (587)
176 smart00470 ParB ParB-like nucl 21.3 43 0.00094 25.1 0.8 13 99-111 48-60 (89)
177 KOG1290 Serine/threonine prote 21.2 1.9E+02 0.004 30.1 5.3 91 101-194 395-507 (590)
178 PRK12677 xylose isomerase; Pro 21.1 4.4E+02 0.0096 25.8 7.9 64 121-187 110-178 (384)
179 PRK08898 coproporphyrinogen II 21.1 3.3E+02 0.0071 26.4 7.0 50 122-171 185-243 (394)
180 cd01979 Pchlide_reductase_N Pc 20.9 7.7E+02 0.017 23.8 13.5 75 180-272 275-350 (396)
181 PF10138 vWA-TerF-like: vWA fo 20.8 6.3E+02 0.014 22.8 10.3 51 97-156 3-56 (200)
182 COG2759 MIS1 Formyltetrahydrof 20.6 8.4E+02 0.018 25.3 9.7 106 117-240 348-454 (554)
183 PF01261 AP_endonuc_2: Xylose 20.4 4.4E+02 0.0094 21.7 6.9 42 107-148 2-50 (213)
184 smart00549 TAFH TAF homology. 20.4 1.1E+02 0.0024 24.4 2.9 42 224-270 20-61 (92)
185 COG4001 Predicted metal-bindin 20.3 1.2E+02 0.0027 24.2 3.1 40 220-259 42-84 (102)
186 PRK12595 bifunctional 3-deoxy- 20.0 8.1E+02 0.018 23.8 10.0 83 123-237 167-250 (360)
No 1
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.2e-65 Score=468.40 Aligned_cols=188 Identities=44% Similarity=0.759 Sum_probs=182.6
Q ss_pred HHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHH
Q 044091 86 AEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSL 165 (275)
Q Consensus 86 ~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l 165 (275)
...+..+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|
T Consensus 10 ~~~~~~~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L 89 (253)
T PRK14832 10 PPDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLL 89 (253)
T ss_pred cccCCCCCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHH
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCC
Q 044091 166 LESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIE 245 (275)
Q Consensus 166 ~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~ 245 (275)
+.+++.+..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.++
T Consensus 90 ~~~~l~~~~~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~~g~~~ 169 (253)
T PRK14832 90 FERLLRRELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLS 169 (253)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 246 PNDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 246 ~edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+++||++.|+++|+++ ++||||||||||
T Consensus 170 ~~~i~e~~i~~~L~~~--~~Pd~DLlIRTs 197 (253)
T PRK14832 170 ADAVNEQLVEQHLYTA--DTPPPDLLIRTS 197 (253)
T ss_pred hhhCCHHHHHHhhCcC--CCCCCCEEEECC
Confidence 9999999999999997 899999999998
No 2
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.7e-65 Score=460.30 Aligned_cols=180 Identities=33% Similarity=0.590 Sum_probs=174.5
Q ss_pred cCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHh
Q 044091 90 QRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESG 169 (275)
Q Consensus 90 ~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~ 169 (275)
+.+++|+||||||||||||||++|+++.+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|+.++
T Consensus 2 ~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~ 81 (230)
T PRK14837 2 NKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADY 81 (230)
T ss_pred CCCCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Q 044091 170 VKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDV 249 (275)
Q Consensus 170 l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI 249 (275)
|.+..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++ +.+++++|
T Consensus 82 l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~----~~~~~~~i 157 (230)
T PRK14837 82 LSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLS----SGLDLETL 157 (230)
T ss_pred HHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHh----cCCChhhC
Confidence 99888889999999999999999999999999999999999999999999999999999999999983 57889999
Q ss_pred CHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 250 SESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 250 ~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
||+.|+++||+. ++||||||||||
T Consensus 158 ~e~~~~~~L~~~--~~p~~DLlIRTs 181 (230)
T PRK14837 158 NENVFSKFLDNP--ELPDLDLLIRTG 181 (230)
T ss_pred CHHHHHHhhccC--CCCCCCEEEECC
Confidence 999999999998 999999999998
No 3
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.2e-65 Score=464.20 Aligned_cols=191 Identities=39% Similarity=0.595 Sum_probs=184.0
Q ss_pred hHHHHhccCCCCCCEEEEEecCCchHHHHcC----CCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHH
Q 044091 83 PALAEELQRESMPRHVAVIMDGNRRWAHLRG----LPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVE 158 (275)
Q Consensus 83 ~~l~~~l~~~~iPrHIAiImDGNRRwAk~~g----l~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~E 158 (275)
+.-..-|+.+++|+||||||||||||||++| ++..+||++|++++.++++||.++||++|||||||+|||+||++|
T Consensus 7 ~~~~~~~~~~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~E 86 (250)
T PRK14840 7 QAQENFPSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEE 86 (250)
T ss_pred hhhhhhcccCCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHH
Confidence 3444557899999999999999999999975 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHH
Q 044091 159 VEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMK 238 (275)
Q Consensus 159 V~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~ 238 (275)
|+.||+|+.++|.+..+.+.++||+|+|+||+++||++++++++++|+.|++|++++||||++||||+||++|+++++++
T Consensus 87 V~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~ 166 (250)
T PRK14840 87 VAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQD 166 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 239 VKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 239 v~~g~l~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+.+|.++++||++++|+++|++. ++||||||||||
T Consensus 167 v~~~~~~~~~i~~~~i~~~L~~~--~~pdpDLlIRTs 201 (250)
T PRK14840 167 LANKKISSDDISEELISSYLDTS--GLPDPDLLIRTG 201 (250)
T ss_pred HHhCCCChhhCCHHHHHHHhccC--CCCCCCEEEeCC
Confidence 99999999999999999999987 899999999998
No 4
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.1e-65 Score=461.69 Aligned_cols=185 Identities=29% Similarity=0.503 Sum_probs=180.0
Q ss_pred ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHH
Q 044091 89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLES 168 (275)
Q Consensus 89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~ 168 (275)
|..+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|+.+
T Consensus 3 ~~~~~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~ 82 (241)
T PRK14842 3 LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVE 82 (241)
T ss_pred CCCCCCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCC-
Q 044091 169 GVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPN- 247 (275)
Q Consensus 169 ~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~e- 247 (275)
++.+..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.+|.++++
T Consensus 83 ~l~~~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~~~ 162 (241)
T PRK14842 83 FIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTLEK 162 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCccc
Confidence 9998888899999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 248 DVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 248 dI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+||++.|+++||++ ++||||||||||
T Consensus 163 ~i~e~~~~~~L~t~--~~p~pDLlIRTs 188 (241)
T PRK14842 163 PLKEKEFEKFLYTS--PLPPVDLLIRTA 188 (241)
T ss_pred cCCHHHHHHHhCcC--CCCCCCEEEECC
Confidence 89999999999997 899999999998
No 5
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=3.5e-65 Score=458.96 Aligned_cols=178 Identities=46% Similarity=0.767 Sum_probs=175.5
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKE 175 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~ 175 (275)
+||||||||||||||++|+++.+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|+.++|.+..+
T Consensus 1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~ 80 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK 80 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHH
Q 044091 176 SFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIE 255 (275)
Q Consensus 176 ~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~ 255 (275)
.+.++||||+++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.+++++||++.|+
T Consensus 81 ~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~~i~e~~~~ 160 (226)
T TIGR00055 81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLN 160 (226)
T ss_pred HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCChhhCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCCCCcEEEecC
Q 044091 256 QELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 256 ~~L~t~~~~~PdPDLLIRTs 275 (275)
++||++ ++||||||||||
T Consensus 161 ~~L~t~--~~pdpDLlIRTs 178 (226)
T TIGR00055 161 KHLYTA--NLPPVDLLIRTS 178 (226)
T ss_pred HhhccC--CCCCCCEEEeCC
Confidence 999998 899999999998
No 6
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.5e-65 Score=464.40 Aligned_cols=192 Identities=45% Similarity=0.769 Sum_probs=185.2
Q ss_pred hhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHH
Q 044091 82 APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEF 161 (275)
Q Consensus 82 ~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~ 161 (275)
...+...++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.
T Consensus 8 ~~~~~~~~~~~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~ 87 (249)
T PRK14831 8 LQDLPADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNF 87 (249)
T ss_pred chhhhhhcccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHH
Confidence 34455567778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhc
Q 044091 162 LMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKD 241 (275)
Q Consensus 162 Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~ 241 (275)
||+|+.++|.+..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++
T Consensus 88 Lm~L~~~~l~~~~~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v~~ 167 (249)
T PRK14831 88 LMTLFERVLRRELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQ 167 (249)
T ss_pred HHHHHHHHHHHHHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHc
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 242 GLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 242 g~l~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
|.+++++||++.|+++||+. ++||||||||||
T Consensus 168 g~l~~~~i~e~~~~~~L~t~--~~pdpDLlIRTs 199 (249)
T PRK14831 168 GELDPSEIDENLFESELYTA--GIKDPDLLIRTS 199 (249)
T ss_pred CCCChHhCCHHHHHHhhccC--CCCCCCEEEeCC
Confidence 99999999999999999987 899999999998
No 7
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.2e-65 Score=463.22 Aligned_cols=187 Identities=34% Similarity=0.568 Sum_probs=182.2
Q ss_pred HhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHH
Q 044091 87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLL 166 (275)
Q Consensus 87 ~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~ 166 (275)
..++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|+
T Consensus 7 ~~~~~~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~ 86 (243)
T PRK14829 7 PDIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFS 86 (243)
T ss_pred cccccCCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCC
Q 044091 167 ESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEP 246 (275)
Q Consensus 167 ~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~ 246 (275)
++++....+.+.++||||+++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.+++
T Consensus 87 ~~~l~~~~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~g~~~~ 166 (243)
T PRK14829 87 RDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISG 166 (243)
T ss_pred HHHHHHHHHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCh
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 247 NDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 247 edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
++||++.|+++|++. ++||||||||||
T Consensus 167 ~~i~e~~i~~~L~~~--~~pdpDLlIRTs 193 (243)
T PRK14829 167 DRVTEKMISDHLYNP--DMPDVDLFLRTS 193 (243)
T ss_pred HhCCHHHHHHHhccC--CCCCCCEEEEcC
Confidence 999999999999997 899999999998
No 8
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.2e-64 Score=459.64 Aligned_cols=186 Identities=40% Similarity=0.689 Sum_probs=182.1
Q ss_pred hccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHH
Q 044091 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLE 167 (275)
Q Consensus 88 ~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~ 167 (275)
+++++++|+||||||||||||||++|++..+||.+|++++.++++||.++||++||||+||+|||+||++||+.||+|+.
T Consensus 8 ~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~ 87 (249)
T PRK14834 8 ESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLR 87 (249)
T ss_pred CCCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCC
Q 044091 168 SGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPN 247 (275)
Q Consensus 168 ~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~e 247 (275)
.++.+..+.+.++||+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.+|.++++
T Consensus 88 ~~l~~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~~g~~~~~ 167 (249)
T PRK14834 88 LFIRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPA 167 (249)
T ss_pred HHHHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChh
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 248 DVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 248 dI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
|||++.|+++|++. ++||||||||||
T Consensus 168 dI~e~~i~~~L~~~--~~pdpDLLIRTs 193 (249)
T PRK14834 168 SIDAETISANLDTA--DIPDPDLIIRTS 193 (249)
T ss_pred hCCHHHHHHHhccC--CCCCCCEEEEcC
Confidence 99999999999987 899999999997
No 9
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.7e-64 Score=458.59 Aligned_cols=183 Identities=40% Similarity=0.725 Sum_probs=177.5
Q ss_pred ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHH
Q 044091 89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLES 168 (275)
Q Consensus 89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~ 168 (275)
+..+++|+||||||||||||||++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+++.+
T Consensus 5 ~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~ 84 (242)
T PRK14838 5 IDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLD 84 (242)
T ss_pred ccCCCCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCC
Q 044091 169 GVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPND 248 (275)
Q Consensus 169 ~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~ed 248 (275)
+|.+. .+.++||+|+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.+++++
T Consensus 85 ~l~~~--~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~~ 162 (242)
T PRK14838 85 SIEEE--TFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEE 162 (242)
T ss_pred HHHHH--HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHHHhCCCChhh
Confidence 99764 4788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 249 VSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 249 I~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
||++.|+++|++. ++||||||||||
T Consensus 163 i~e~~~~~~L~~~--~~pd~DLlIRTs 187 (242)
T PRK14838 163 ITEESISEHLTTN--FMPDPDLLIRTG 187 (242)
T ss_pred CCHHHHHHHhccC--CCCCCCEEEeCC
Confidence 9999999999997 899999999998
No 10
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.6e-64 Score=469.48 Aligned_cols=193 Identities=31% Similarity=0.534 Sum_probs=187.2
Q ss_pred chhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHH
Q 044091 81 DAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVE 160 (275)
Q Consensus 81 ~~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~ 160 (275)
....+...|+.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+||||||++||+
T Consensus 54 ~~~~~~~~l~~~~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~ 133 (296)
T PRK14827 54 TSKAAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVR 133 (296)
T ss_pred cccccccccCCCCCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHH
Confidence 45566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHh
Q 044091 161 FLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVK 240 (275)
Q Consensus 161 ~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~ 240 (275)
.||+|++++|.+..+.+.++||||+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|+++++++|+
T Consensus 134 ~Lm~L~~~~l~~~~~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v~ 213 (296)
T PRK14827 134 FLMGFNRDVVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREAA 213 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 241 DGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 241 ~g~l~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+|.+++++||++.|+++|++. ++||||||||||
T Consensus 214 ~g~l~~~~I~e~~i~~~L~t~--~~PdpDLlIRTs 246 (296)
T PRK14827 214 AGRLNPERITESTIARHLQRP--DIPDVDLFLRTS 246 (296)
T ss_pred cCCCChhhccHHHHHHHhccC--CCCCCCEEEecC
Confidence 999999999999999999997 999999999998
No 11
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-64 Score=461.81 Aligned_cols=188 Identities=43% Similarity=0.725 Sum_probs=183.4
Q ss_pred HHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHH
Q 044091 86 AEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSL 165 (275)
Q Consensus 86 ~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l 165 (275)
...|+.+++|+|||||||||||||+++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||++
T Consensus 6 ~~~~~~~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l 85 (253)
T PRK14836 6 QMIPANENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMEL 85 (253)
T ss_pred ccccccCCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCC
Q 044091 166 LESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIE 245 (275)
Q Consensus 166 ~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~ 245 (275)
+.++|.+..+.+.++||+|+++||++.||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.++
T Consensus 86 ~~~~l~~~~~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~~g~l~ 165 (253)
T PRK14836 86 FLKALDREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLA 165 (253)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 246 PNDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 246 ~edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+++||++.|+++|++. ++||||||||||
T Consensus 166 ~~~i~e~~i~~~L~~~--~~pdpDLlIRTs 193 (253)
T PRK14836 166 PDEIDEALLAQHLALA--DLPEPDLFIRTS 193 (253)
T ss_pred hHhCCHHHHHHHhccC--CCCCCCEEEEcC
Confidence 9999999999999997 899999999998
No 12
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=2.1e-64 Score=452.97 Aligned_cols=179 Identities=44% Similarity=0.759 Sum_probs=176.5
Q ss_pred CCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHH
Q 044091 95 PRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEK 174 (275)
Q Consensus 95 PrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~ 174 (275)
|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+++++++.+..
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHH
Q 044091 175 ESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLI 254 (275)
Q Consensus 175 ~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i 254 (275)
+.+.++||+||++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.++++|||++.|
T Consensus 81 ~~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~~~~~~~~~~i~~~~~ 160 (221)
T cd00475 81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPEDIDESTL 160 (221)
T ss_pred HHHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHhCCHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCCCCCcEEEecC
Q 044091 255 EQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 255 ~~~L~t~~~~~PdPDLLIRTs 275 (275)
+++|++. ++||||||||||
T Consensus 161 ~~~L~~~--~~p~pDLlIRTs 179 (221)
T cd00475 161 NKHLYTH--DSPDPDLLIRTS 179 (221)
T ss_pred HHhhCcC--CCCCCCEEEecC
Confidence 9999987 899999999998
No 13
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6.2e-64 Score=457.36 Aligned_cols=187 Identities=42% Similarity=0.718 Sum_probs=182.1
Q ss_pred HhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHH
Q 044091 87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLL 166 (275)
Q Consensus 87 ~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~ 166 (275)
..++.+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|+
T Consensus 15 ~~~~~~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~ 94 (251)
T PRK14830 15 EELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLP 94 (251)
T ss_pred cccCCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCC
Q 044091 167 ESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEP 246 (275)
Q Consensus 167 ~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~ 246 (275)
.++|.+..+.+.+++|+|+|+||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++++|.+++
T Consensus 95 ~~~l~~~~~~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~~g~l~~ 174 (251)
T PRK14830 95 VEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNP 174 (251)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCh
Confidence 99999888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 247 NDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 247 edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+||+++.|+++|++. ++||||||||||
T Consensus 175 ~~I~e~~i~~~L~~~--~~pdpDLlIRTs 201 (251)
T PRK14830 175 EDITEELISNYLMTK--GLPDPDLLIRTS 201 (251)
T ss_pred HhCCHHHHHHHhCcC--CCCCCCEEEeCC
Confidence 999999999999997 899999999997
No 14
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-63 Score=450.48 Aligned_cols=179 Identities=40% Similarity=0.662 Sum_probs=174.2
Q ss_pred CCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHH
Q 044091 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKE 172 (275)
Q Consensus 93 ~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~ 172 (275)
++|+||||||||||||||++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|++++|.+
T Consensus 2 ~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 81 (233)
T PRK14841 2 RIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDR 81 (233)
T ss_pred CCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 044091 173 EKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSES 252 (275)
Q Consensus 173 ~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~ 252 (275)
..+.+.++||+||++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++++.+|.. ++|+++
T Consensus 82 ~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~--~~i~~~ 159 (233)
T PRK14841 82 EMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGKK--IELTEE 159 (233)
T ss_pred HHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCc--CCCCHH
Confidence 888899999999999999999999999999999999999999999999999999999999999999988864 689999
Q ss_pred HHHhhhhcCCCCCCCCcEEEecC
Q 044091 253 LIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 253 ~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
.|+++|++. ++||||||||||
T Consensus 160 ~~~~~L~~~--~~pdpDLlIRTs 180 (233)
T PRK14841 160 TFRQYLYLP--DVPDPDLIIRTS 180 (233)
T ss_pred HHHHHhccC--CCCCCCEEEeCC
Confidence 999999997 899999999998
No 15
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4e-63 Score=447.63 Aligned_cols=181 Identities=34% Similarity=0.633 Sum_probs=172.0
Q ss_pred CCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHH
Q 044091 92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVK 171 (275)
Q Consensus 92 ~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~ 171 (275)
+++|+||||||||||||||++|++..+||++|++++.++++||.++||++|||||||+|||+||++||+.||+|+.++|.
T Consensus 2 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 81 (233)
T PRK14833 2 DNTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLK 81 (233)
T ss_pred CCCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCH
Q 044091 172 EEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSE 251 (275)
Q Consensus 172 ~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e 251 (275)
+..+.+.++||+||++||+++||++++++++++|+.|++|++++||||++||||+||++|++++++++.. .....+|++
T Consensus 82 ~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~-~~~~~~i~e 160 (233)
T PRK14833 82 DERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPS-HIGELESLE 160 (233)
T ss_pred HHHHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhc-ccCcccCCH
Confidence 8888899999999999999999999999999999999999999999999999999999999999988631 122348999
Q ss_pred HHHHhhhhcCCCCCCCCcEEEecC
Q 044091 252 SLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 252 ~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+.|+++|+++ ++||||||||||
T Consensus 161 ~~l~~~L~~~--~~p~pDLlIRTs 182 (233)
T PRK14833 161 EEISNCLDTA--DLPEVDLLIRTG 182 (233)
T ss_pred HHHHHHhccC--CCCCCCEEEECC
Confidence 9999999997 899999999998
No 16
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=3.9e-63 Score=462.75 Aligned_cols=192 Identities=28% Similarity=0.463 Sum_probs=178.0
Q ss_pred hhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHH
Q 044091 82 APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEF 161 (275)
Q Consensus 82 ~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~ 161 (275)
++.+...|+.+++|+||||||||||||||++|+++.+||++|++++.++++||.++||++|||||||+|||+||++||++
T Consensus 7 ~~~~~~~l~~g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~ 86 (322)
T PTZ00349 7 ERFITSLLRDFINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHF 86 (322)
T ss_pred HHHHHHHhhcCCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHH
Confidence 35666779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHH---HHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHH---------
Q 044091 162 LMSLLESGVKEE---KESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLV--------- 229 (275)
Q Consensus 162 Lm~l~~~~l~~~---~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv--------- 229 (275)
||+|+..++.+. .+.+.++||||||+||++.||+++++.++++|+.|++|++++||||++||||+||+
T Consensus 87 Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~~~~~ 166 (322)
T PTZ00349 87 LFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLY 166 (322)
T ss_pred HHHHHHHHHHHhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcccchH
Confidence 999999999876 57788999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHH-------------HhcCCC---------------------------------------CCCCCCHHHHHh
Q 044091 230 -QACQRIAMK-------------VKDGLI---------------------------------------EPNDVSESLIEQ 256 (275)
Q Consensus 230 -~A~r~l~~~-------------v~~g~l---------------------------------------~~edI~e~~i~~ 256 (275)
+|+++++++ +.+|.+ ++++|+++.|.+
T Consensus 167 ~~A~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~~~~~ 246 (322)
T PTZ00349 167 FDTYKNLLEEKKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEIVNYHK 246 (322)
T ss_pred HHHHHHHHHHhccccccccccccccccccccchhcccccccccccccccccccccccccccccccccCChhhccHHHHHH
Confidence 799999887 455654 334566667999
Q ss_pred hhhcCCCCCCCCcEEEecC
Q 044091 257 ELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 257 ~L~t~~~~~PdPDLLIRTs 275 (275)
+||++ ++||||||||||
T Consensus 247 ~Lyt~--~~PdpDLlIRTS 263 (322)
T PTZ00349 247 KLLTS--DLPPPNILIRTS 263 (322)
T ss_pred hccCC--CCCCCCEEEECC
Confidence 99998 999999999998
No 17
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=6e-63 Score=455.59 Aligned_cols=193 Identities=32% Similarity=0.528 Sum_probs=183.7
Q ss_pred chhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHH
Q 044091 81 DAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVE 160 (275)
Q Consensus 81 ~~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~ 160 (275)
|.+.+...+..+++|+||||||||||||||++|++..+||.+|++++.++++||.++||++||||+||+|||+||++||+
T Consensus 28 ~~~~l~~~~~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~ 107 (275)
T PRK14835 28 YEQRLEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVE 107 (275)
T ss_pred HHHHHHhhcccCCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHH
Confidence 34566677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHH--HhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHH
Q 044091 161 FLMSLLESGVKEEKE--SFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMK 238 (275)
Q Consensus 161 ~Lm~l~~~~l~~~~~--~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~ 238 (275)
.||+++.+++.+..+ .+.++||+|+++||++.||+++++.++++|+.|++|++++||||++||||+||++|+++++++
T Consensus 108 ~Lm~L~~~~l~~~~~~~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~i~~~ 187 (275)
T PRK14835 108 TLMNLFEREARRMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLE 187 (275)
T ss_pred HHHHHHHHHHHHHhchhhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHH
Confidence 999999999987653 688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCC----CHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 239 VKDGLIEPNDV----SESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 239 v~~g~l~~edI----~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+++|.++++|| ||+.|+++|++. ++||||||||||
T Consensus 188 ~~~g~~~~~~i~~~~~e~~i~~~L~~~--~~p~pDLLIRTs 226 (275)
T PRK14835 188 AAATGKSPEEVAAELTPEHISAHLYTA--GVPDPDFIIRTS 226 (275)
T ss_pred HHcCCCChHHhcccCCHHHHHHHhccC--CCCCCCEEEecC
Confidence 99999999877 789999999997 899999999998
No 18
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.6e-62 Score=446.19 Aligned_cols=189 Identities=32% Similarity=0.475 Sum_probs=178.9
Q ss_pred hhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCC-cchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHH
Q 044091 82 APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVG-SGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVE 160 (275)
Q Consensus 82 ~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~-~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~ 160 (275)
.+.+...++.+++|+||||||||||||||++|++.. +||++|++++.++++||.++||++|||||||+|||+||++||+
T Consensus 14 ~~~~~~~~~~~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~ 93 (256)
T PRK14828 14 ARRLLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELN 93 (256)
T ss_pred HHHHHhhcccCCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHH
Confidence 345666778889999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHh
Q 044091 161 FLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVK 240 (275)
Q Consensus 161 ~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~ 240 (275)
.||+|+.+++.+.. .+++|+|+++||++.||++++++++++|+.|++|++++||||++||||+||++|++++++++.
T Consensus 94 ~Lm~L~~~~l~~~~---~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~ 170 (256)
T PRK14828 94 PLLDIIEDVVRQLA---PDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHK 170 (256)
T ss_pred HHHHHHHHHHHHHH---HhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHH
Confidence 99999999997643 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC----CCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 241 DGLIEPN----DVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 241 ~g~l~~e----dI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+|.++++ +||++.|+++|++. ++||||||||||
T Consensus 171 ~~~~~~~~~~~~i~e~~i~~~L~~~--~~P~pDLlIRTs 207 (256)
T PRK14828 171 DKGTSIDELAESVTVDAISTHLYTG--GQPDPDLVIRTS 207 (256)
T ss_pred hCCCChhhccccCCHHHHHHHhccC--CCCCCCEEEeCC
Confidence 9999876 67889999999997 899999999997
No 19
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.2e-61 Score=438.34 Aligned_cols=172 Identities=39% Similarity=0.610 Sum_probs=166.3
Q ss_pred CCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHH
Q 044091 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKE 172 (275)
Q Consensus 93 ~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~ 172 (275)
.-|+|||||||||||||+++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|++++|.+
T Consensus 8 ~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~ 87 (239)
T PRK14839 8 RSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRN 87 (239)
T ss_pred CCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHH
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 044091 173 EKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSES 252 (275)
Q Consensus 173 ~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~ 252 (275)
..+.+.++||||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|+++++ .+++||++
T Consensus 88 ~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~--------~~~~i~e~ 159 (239)
T PRK14839 88 ETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL--------GPEGLSRE 159 (239)
T ss_pred HHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc--------CcccCCHH
Confidence 8888999999999999999999999999999999999999999999999999999999999864 57899999
Q ss_pred HHHhhhhcCCCCCCCCcEEEecC
Q 044091 253 LIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 253 ~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
.|+++|+ . ++||||||||||
T Consensus 160 ~~~~~l~-~--~~p~~DLlIRTs 179 (239)
T PRK14839 160 AFSDLLT-G--DGGDVDLLIRTG 179 (239)
T ss_pred HHHHHhc-c--CCCCCCEEEeCC
Confidence 9999998 5 899999999998
No 20
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=5.2e-61 Score=433.87 Aligned_cols=185 Identities=46% Similarity=0.676 Sum_probs=177.9
Q ss_pred hccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHH
Q 044091 88 ELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLE 167 (275)
Q Consensus 88 ~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~ 167 (275)
.+..+++|+||||||||||||||++|++..+||++|+.++.++++||.++||++||+||||+||||||++||+.||+|+.
T Consensus 30 ~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~ 109 (271)
T KOG1602|consen 30 LLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLAL 109 (271)
T ss_pred HHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHH---HHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCC
Q 044091 168 SGVKEEK---ESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLI 244 (275)
Q Consensus 168 ~~l~~~~---~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l 244 (275)
++++... +.++++||||||+||+++||+++++.+.++|+.|++|++++||||++|+||+||++|+|+++..+++|.+
T Consensus 110 ~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~~~g~~ 189 (271)
T KOG1602|consen 110 EKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRVKDGDI 189 (271)
T ss_pred HHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHHHHHhhhcCCC
Confidence 9998533 4688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 245 EPNDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 245 ~~edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
++ ||++..|+++||++ +.|.||||||||
T Consensus 190 ~~-~i~~~~~e~~l~~~--~~p~pDLlIRTS 217 (271)
T KOG1602|consen 190 DV-DINLSDIEECLYTS--DVPHPDLLIRTS 217 (271)
T ss_pred cc-chhhHHHHHhhccC--CCCCCCEEEEcC
Confidence 88 99999999999998 779999999998
No 21
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=7.6e-60 Score=428.78 Aligned_cols=181 Identities=48% Similarity=0.828 Sum_probs=178.9
Q ss_pred CCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHH
Q 044091 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKE 172 (275)
Q Consensus 93 ~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~ 172 (275)
.+|+||||||||||||||++|+++..||..|++++.++++||.++||++||+|+||+|||+||++||++||+++..++.+
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHH
Q 044091 173 EKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSES 252 (275)
Q Consensus 173 ~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~ 252 (275)
..+.+++++|+|+++|+++.||.++++.++.+|+.|++|++++||+|++||||+||++|+|+++++|++|.+++++|||+
T Consensus 95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v~~g~l~~~~I~e~ 174 (245)
T COG0020 95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEE 174 (245)
T ss_pred HHHHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHcCCCChHHcCHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCCCCCcEEEecC
Q 044091 253 LIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 253 ~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
+|+++|++. ++||||||||||
T Consensus 175 ~i~~~L~~~--~~pdpDLlIRTs 195 (245)
T COG0020 175 LISSHLYTS--GLPDPDLLIRTS 195 (245)
T ss_pred HHHHhhccc--CCCCCCEEEeCC
Confidence 999999997 999999999997
No 22
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.1e-58 Score=417.85 Aligned_cols=172 Identities=37% Similarity=0.627 Sum_probs=169.5
Q ss_pred ecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCC
Q 044091 102 MDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRER 181 (275)
Q Consensus 102 mDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~ 181 (275)
|||||||||++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+|+.++|.+..+.+.++|
T Consensus 1 mDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~ 80 (229)
T PRK10240 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHN 80 (229)
T ss_pred CCCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998888899999
Q ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhcC
Q 044091 182 IRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN 261 (275)
Q Consensus 182 irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L~t~ 261 (275)
|+|+++||+++||+++++.++++|+.|++|++++||||++||||+||++|+++++++|.+|.++++||+++.|+++|++.
T Consensus 81 i~vr~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~~~~~~i~e~~i~~~L~t~ 160 (229)
T PRK10240 81 VRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMH 160 (229)
T ss_pred cEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChhhCCHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCcEEEecC
Q 044091 262 CTEFPYPDLLIRTS 275 (275)
Q Consensus 262 ~~~~PdPDLLIRTs 275 (275)
++||||||||||
T Consensus 161 --~~pdpDLlIRTs 172 (229)
T PRK10240 161 --ELAPVDLVIRTG 172 (229)
T ss_pred --CCCCCCEEEeCC
Confidence 899999999998
No 23
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=2.9e-58 Score=413.46 Aligned_cols=172 Identities=47% Similarity=0.801 Sum_probs=158.3
Q ss_pred EecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhh--
Q 044091 101 IMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFI-- 178 (275)
Q Consensus 101 ImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~-- 178 (275)
|||||||||+++|++..+||.+|++++.++++||.++||++|||||||+|||+||++||+.||+++..++.+..+...
T Consensus 1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~ 80 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFH 80 (223)
T ss_dssp EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998887666
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhh
Q 044091 179 RERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQEL 258 (275)
Q Consensus 179 ~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L 258 (275)
+++|||+++||+++||+++++.++++|+.|++|++++||||++||||+||++|++++++.|++|.++++|||++.|+++|
T Consensus 81 ~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~~~~~~~~~i~~~~i~~~L 160 (223)
T PF01255_consen 81 KNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEVQSGKLSPEDIDEELISSHL 160 (223)
T ss_dssp HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHHHTTSSGGGG-SHHHHHHTS
T ss_pred hcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhhccCccccccCCHHHHHhhc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcEEEecC
Q 044091 259 ETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 259 ~t~~~~~PdPDLLIRTs 275 (275)
+++ ++| ||||||||
T Consensus 161 ~~~--~~P-pDLlIRts 174 (223)
T PF01255_consen 161 YTP--DLP-PDLLIRTS 174 (223)
T ss_dssp TTT--TS---SEEEEET
T ss_pred ccc--CCC-CCEEEEeC
Confidence 997 777 99999998
No 24
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=98.99 E-value=4.2e-10 Score=103.12 Aligned_cols=154 Identities=17% Similarity=0.168 Sum_probs=104.2
Q ss_pred ccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHH-HHHHHH
Q 044091 89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEF-LMSLLE 167 (275)
Q Consensus 89 l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~-Lm~l~~ 167 (275)
.+..+.|+|+|++.--++ +| .-.+..+.+++.||...||+++++|+.-. -.+|...++.. +.....
T Consensus 59 ~~L~k~p~hl~lvI~~v~-----------~~-~~~~~da~~~v~w~v~~gik~~~lyd~~g-~~~r~~~~~~~~I~s~la 125 (263)
T KOG2818|consen 59 SSLKKGPKHLALVIHPVE-----------DG-EGSFSDASSIVFWAVTVGIKYLSLYDRVG-IKKRNMPVVRDEIISHLA 125 (263)
T ss_pred hhhhhcchhheEEEEecc-----------cC-CceehhhHHHHHHHHHhccceeeHHHHHH-HhccCcHHHHHHHHHhhh
Confidence 445689999997766442 23 12368899999999999999999999764 23566655443 222222
Q ss_pred HhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcC--CCC
Q 044091 168 SGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDG--LIE 245 (275)
Q Consensus 168 ~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g--~l~ 245 (275)
+++... . ..+-+.- .+.. .+....++..+.+..-+.-+||.-|++.++.|.+.+... ..+
T Consensus 126 ~~~g~~-----~--~~~~~~~---~~sn--------D~~nQ~~~~~L~~~~~s~~DGr~~i~Dl~r~i~~~~~~~~~~~~ 187 (263)
T KOG2818|consen 126 NYFGLD-----E--PTLAVTI---KLSN--------DEPNQEDKCKLGTHAISLEDGRMIIIDLTRLIQELCYLYELYRS 187 (263)
T ss_pred hhcCCC-----C--CcccccC---CCCC--------CCcccccccchhheecccccccHHHHHHHHHHHHHHHHHHHhCC
Confidence 222200 0 0110000 0111 122224566788888999999999999999988776654 468
Q ss_pred CCCCCHHHHHhhhhcCCCCCCCCcEEEecC
Q 044091 246 PNDVSESLIEQELETNCTEFPYPDLLIRTS 275 (275)
Q Consensus 246 ~edI~e~~i~~~L~t~~~~~PdPDLLIRTs 275 (275)
++|||.|++++.|... +.|||||+|++|
T Consensus 188 ~~~itve~vds~l~e~--~~PePdLll~fg 215 (263)
T KOG2818|consen 188 ETDITVETVDSELKEF--VEPEPDLLLFFG 215 (263)
T ss_pred CccccHHHHHHHHHhc--CCCCcceeeeec
Confidence 8999999999999875 899999999986
No 25
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=87.95 E-value=3.4 Score=34.77 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=64.8
Q ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHH--
Q 044091 120 YEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCL-- 197 (275)
Q Consensus 120 h~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l-- 197 (275)
.....+.+.+.++.|..+|++.+++....-.-+.... .+.-++.+.+.|+...+...+.|+++-+-..........
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~--~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~~ 143 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD--TEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETPFS 143 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS--HHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEESS
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCC--HHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccchhh
Confidence 4566899999999999999999999854211111111 223445555666666677778899988865443332111
Q ss_pred -HHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHH
Q 044091 198 -EELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMK 238 (275)
Q Consensus 198 -~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~ 238 (275)
.....-+++.-..+-++.+.++=-+-...+..++++.+...
T Consensus 144 ~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~ 185 (213)
T PF01261_consen 144 VEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLAPR 185 (213)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG
T ss_pred HHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhhcc
Confidence 22222233332233233333222233355666676666544
No 26
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=84.87 E-value=16 Score=32.94 Aligned_cols=114 Identities=6% Similarity=0.024 Sum_probs=68.7
Q ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec--CCC-CCCHH
Q 044091 120 YEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG--DTS-KLPKC 196 (275)
Q Consensus 120 h~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG--d~~-~LP~~ 196 (275)
..+.++.+.+.+++|..+|++.+.+... ..++..+.++ .++-+.+.++...+...++||++-+-- ..+ .+-..
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~-~~~~~~~~~~---~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~~~~~~~t 160 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAA-HAGYLTPPNV---IWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCN 160 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCC-CCCCCCCHHH---HHHHHHHHHHHHHHHHHHcCCEEEEecCCCCcccccCC
Confidence 4566789999999999999999988664 2344444433 345556677777777888999987642 111 11111
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Q 044091 197 LEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAM 237 (275)
Q Consensus 197 l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~ 237 (275)
....++-+.+....+-++.+.++-.|..-+++...++++..
T Consensus 161 ~~~~~~l~~~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~~~ 201 (275)
T PRK09856 161 ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGD 201 (275)
T ss_pred HHHHHHHHHHcCCCcceeEEeecchhcCCCCHHHHHHHhCC
Confidence 22333333333334556666666544444567777766644
No 27
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=84.65 E-value=11 Score=33.89 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=45.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG 188 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG 188 (275)
-..+..+.+.+++++|..+|++.|.+..+. .+..+..+ .-++.+.+.|.+..+...++||++-+-.
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~--~~~~~~~~--~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 88 TRERALEIMKKAIRLAQDLGIRTIQLAGYD--VYYEEKSE--ETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCcc--cccccccH--HHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 345678899999999999999999986442 12222221 2345556666666677888899988754
No 28
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=79.90 E-value=16 Score=33.59 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--.+.+.+.++|+.+.||.-+.+-..+.|.+.-+.+|...+++...+.... .+.| ++|=... .+.+.+
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~--------~~~v-i~gv~~~---~~~~~~ 85 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNG--------RVPV-IAGTGSN---NTAEAI 85 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCC--------CCcE-EeccCCc---cHHHHH
Confidence 346889999999999999999999999999999999999998877764321 1222 1232211 223444
Q ss_pred HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHH
Q 044091 202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMK 238 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~ 238 (275)
+.+.......-+..+-+.=.| -+.+++++-.+++++.
T Consensus 86 ~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 86 ELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred HHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc
Confidence 444433333333333332223 2579999999999875
No 29
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=79.36 E-value=12 Score=34.77 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--.+.++++++|+.+.||.-+.+..-+.|.+.=+.+|...+.+...+.... .+.| ++|-... +.+++
T Consensus 23 iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g--------~~pv-i~gv~~~----t~~ai 89 (296)
T TIGR03249 23 FDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKG--------KVPV-YTGVGGN----TSDAI 89 (296)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCC--------CCcE-EEecCcc----HHHHH
Confidence 346789999999999999999999999999999999999998877665432 2222 1232111 34444
Q ss_pred HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHHhcCC----CCCCCCCHHHHHhhh
Q 044091 202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKVKDGL----IEPNDVSESLIEQEL 258 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v~~g~----l~~edI~e~~i~~~L 258 (275)
+.++...+..-+..+.+.=.| .+.++|.+-.+++++.+.-.- .+--+++.+++.+-.
T Consensus 90 ~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn~~g~~l~~~~~~~La 152 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQRDNAVLNADTLERLA 152 (296)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHH
Confidence 444443333334334343334 367999999999987642110 122366777666443
No 30
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=77.22 E-value=18 Score=33.37 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--.+.+.+.++|+.+.||.-+.+...+.|.+.=+.+|...+++...+... ..+.|- .|=.+. .+.+.+
T Consensus 16 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~--------~~~~vi-~gv~~~---s~~~~i 83 (285)
T TIGR00674 16 VDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN--------GRVPVI-AGTGSN---ATEEAI 83 (285)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC--------CCCeEE-EeCCCc---cHHHHH
Confidence 44688999999999999999999999999999999999999887666442 123222 232211 234444
Q ss_pred HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHHhcCC-------CCCCCCCHHHHHhh
Q 044091 202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKVKDGL-------IEPNDVSESLIEQE 257 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v~~g~-------l~~edI~e~~i~~~ 257 (275)
+.+.......-+..+-+.=.| -+.++|++-.+++++.+.-.- .+--+++.+++.+-
T Consensus 84 ~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P~~tg~~l~~~~l~~L 148 (285)
T TIGR00674 84 SLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLYPETVKRL 148 (285)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECcHHhcCCCCHHHHHHH
Confidence 444443333333333332222 257999999999987642100 01135677766644
No 31
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=76.93 E-value=49 Score=31.74 Aligned_cols=110 Identities=10% Similarity=0.136 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCC-CHHHH-HHHHHHHHHhHHHHHHHhhcCCcEEEEecCC----CC-CC
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFR-PEVEV-EFLMSLLESGVKEEKESFIRERIRISVIGDT----SK-LP 194 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kR-p~~EV-~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~----~~-LP 194 (275)
.-++.+.++++||.+.||+ +|-+|.+-|=- +..++ -.+.+.+.+.+.+-.+...++|+|+-+-.+- +. =|
T Consensus 49 ~Nl~~l~~~L~~n~~~~I~---f~RisS~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS~Hp~qfi~LnS~~~ 125 (312)
T TIGR00629 49 ANLRDTMKTLHWNIGHGIP---FYRFSSSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTFHPGQFTQFTSPRE 125 (312)
T ss_pred HHHHHHHHHHHHHHHcCCc---EEecCccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEEECCCccccCCCCCH
Confidence 4578899999999999876 57777755411 11233 2233456666666567788899999885432 22 24
Q ss_pred HHHHHHHHHHHHHhc-------CC-----CceEEEEEecCCCHHHHHHHHHH
Q 044091 195 KCLEELVINVVETTK-------NN-----TRFQLIVAVSYSGQYDLVQACQR 234 (275)
Q Consensus 195 ~~l~~~i~~~e~~T~-------~~-----~~~~lniai~YgGR~EIv~A~r~ 234 (275)
+-+.+.+++++.... .. ..+.+.++..||+|++-.+-+++
T Consensus 126 evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~gdk~~alerf~~ 177 (312)
T TIGR00629 126 SVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFGNKDTTLARFHQ 177 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCCCCHHHHHHHHHH
Confidence 444556666554322 11 35667777888889885555443
No 32
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=75.11 E-value=45 Score=30.11 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=52.8
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCC-CCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHH
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW-FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCL 197 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~-kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l 197 (275)
-.....+.+++.++.|..+|++++++-.+ ..+ ..+.+ .-.+.+.+.++...+...+.||++-+-.-...+-...
T Consensus 93 ~r~~~~~~~~~~i~~a~~lG~~~i~~~~~--~~~~~~~~~---~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~ 167 (283)
T PRK13209 93 VRAQALEIMRKAIQLAQDLGIRVIQLAGY--DVYYEQANN---ETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSI 167 (283)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCc--cccccccHH---HHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCH
Confidence 45667888999999999999999987432 112 12222 2234455566666666778899988854322222233
Q ss_pred HHHHHHHHHHhcCCCce
Q 044091 198 EELVINVVETTKNNTRF 214 (275)
Q Consensus 198 ~~~i~~~e~~T~~~~~~ 214 (275)
...++-+++....+-++
T Consensus 168 ~~~~~ll~~v~~~~lgl 184 (283)
T PRK13209 168 SKALGYAHYLNSPWFQL 184 (283)
T ss_pred HHHHHHHHHhCCCccce
Confidence 34444444433333333
No 33
>PLN02417 dihydrodipicolinate synthase
Probab=74.69 E-value=37 Score=31.44 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISV-IGDTSKLPKCLEEL 200 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~-iGd~~~LP~~l~~~ 200 (275)
--.+.+.+.++|+.+.||.-|.+...++|.+.-+.+|...+++...+... ..+.|-+ +|.. .+.+.
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~--------~~~pvi~gv~~~-----~t~~~ 85 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--------GKIKVIGNTGSN-----STREA 85 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC--------CCCcEEEECCCc-----cHHHH
Confidence 44688999999999999999999999999999999999999887665432 1232221 2322 23444
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHH
Q 044091 201 VINVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMK 238 (275)
Q Consensus 201 i~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~ 238 (275)
++.+....+...+..+.+.=-| -+.++|++-.+++++.
T Consensus 86 i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 86 IHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDM 125 (280)
T ss_pred HHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhh
Confidence 4444443333333322221112 2469999999999874
No 34
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=73.86 E-value=70 Score=29.41 Aligned_cols=103 Identities=18% Similarity=0.261 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISV-IGDTSKLPKCLEEL 200 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~-iGd~~~LP~~l~~~ 200 (275)
--.+.+.+.++|+.+.||.-+.+...+.|.|.=+.+|-..|.+...+... .++.|-+ +|..+ -++..+.
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~--------~~~~vi~gv~~~s--t~~~i~~ 88 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA--------GRVPVIAGVGANS--TEEAIEL 88 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT--------TSSEEEEEEESSS--HHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc--------CceEEEecCcchh--HHHHHHH
Confidence 45788999999999999999999999999999999999999887665432 2333322 44443 2333444
Q ss_pred HHHHHHHhcCCCceEEEEEecC---CCHHHHHHHHHHHHHH
Q 044091 201 VINVVETTKNNTRFQLIVAVSY---SGQYDLVQACQRIAMK 238 (275)
Q Consensus 201 i~~~e~~T~~~~~~~lniai~Y---gGR~EIv~A~r~l~~~ 238 (275)
++.+++. .-+.. -+...| -+.++|++-.+.+++.
T Consensus 89 a~~a~~~---Gad~v-~v~~P~~~~~s~~~l~~y~~~ia~~ 125 (289)
T PF00701_consen 89 ARHAQDA---GADAV-LVIPPYYFKPSQEELIDYFRAIADA 125 (289)
T ss_dssp HHHHHHT---T-SEE-EEEESTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHhhc---CceEE-EEeccccccchhhHHHHHHHHHHhh
Confidence 4444432 22322 233344 6789999999999965
No 35
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=72.89 E-value=40 Score=30.52 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=46.0
Q ss_pred cchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec
Q 044091 118 SGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG 188 (275)
Q Consensus 118 ~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG 188 (275)
+.....++.+...++.|.++|++.+.+..-+.. ..+. +.-++.+.+.+++..+...+.||++.+--
T Consensus 78 ~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~--~~~~---~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 78 EKREKSIERLKDEIERCEELGIRLLVFHPGSYL--GQSK---EEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCC--CCCH---HHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 356788999999999999999998877543221 1122 23345556666666677778899998843
No 36
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=72.46 E-value=24 Score=32.62 Aligned_cols=106 Identities=22% Similarity=0.177 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--++.+.+.++|+.+.||+-+.+...+.|-+.=+.+|...+++...+... ..+.|- .|-.+ ..+.+.+
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~--------~~~~vi-~gv~~---~~~~~~i 86 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN--------GRVPVI-AGTGS---NSTAEAI 86 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC--------CCCcEE-eecCC---chHHHHH
Confidence 44788999999999999999999999999999999999999887776542 122221 22221 1234444
Q ss_pred HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHH
Q 044091 202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKV 239 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v 239 (275)
+.+.....-..+..+-+.=.| -+.++|.+-.+++++.+
T Consensus 87 ~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~ 126 (292)
T PRK03170 87 ELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEAT 126 (292)
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 444443333333322222222 25799999999998764
No 37
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=72.17 E-value=44 Score=31.48 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=56.6
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEeeecCCC---CCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecC-CCCC---
Q 044091 121 EAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW---FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGD-TSKL--- 193 (275)
Q Consensus 121 ~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~---kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd-~~~L--- 193 (275)
..-++.+.++++|+.+.|| -+|-+|.+-+ ..|.. --.+.+.+...|.+-.+.+.++|+|+-+--+ ...|
T Consensus 41 ~~Nl~~l~~~L~~n~~~~I---~~yRisS~liP~ashp~~-~~~~~~~~~~~l~~iG~~~~~~~iRls~HP~qf~vLnSp 116 (275)
T PF03851_consen 41 RQNLEDLLRILEYNIAHGI---RFYRISSDLIPLASHPEV-GWDWEEEFAEELAEIGDLAKENGIRLSMHPDQFTVLNSP 116 (275)
T ss_dssp HHHHHHHHHHHHHHHHTT-----EEE--TTSSTTTTSTT---S-HHHHHHHHHHHHHHHHHHTT-EEEE---TT--TT-S
T ss_pred HHHHHHHHHHHHHHHHcCC---CEEecCcccCCCCCCccc-ccchHHHHHHHHHHHHHHHHHcCCeEEecCCcceeCCCC
Confidence 3557889999999999985 5788887543 23421 1223345666666656678889999987443 2222
Q ss_pred -CHHHHHHHHHHHHHhc-------CC---CceEEEEEecCCCHHHHHH
Q 044091 194 -PKCLEELVINVVETTK-------NN---TRFQLIVAVSYSGQYDLVQ 230 (275)
Q Consensus 194 -P~~l~~~i~~~e~~T~-------~~---~~~~lniai~YgGR~EIv~ 230 (275)
|+=+.+++++++-.+. .. ..+.|.++-.||+|++=.+
T Consensus 117 ~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~al~ 164 (275)
T PF03851_consen 117 REEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAALE 164 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHHHH
Confidence 3333456666554221 22 4578888888999987553
No 38
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=71.23 E-value=38 Score=31.45 Aligned_cols=122 Identities=9% Similarity=0.013 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISV-IGDTSKLPKCLEEL 200 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~-iGd~~~LP~~l~~~ 200 (275)
--.+.+.++++|+.+.||.-+.+..-+.|-+.=+.+|...+.+...+... .++.|-+ +|. . ..+..+.
T Consensus 18 iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~--------~~~pvi~gv~~--~-t~~~i~~ 86 (289)
T cd00951 18 FDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA--------GRVPVLAGAGY--G-TATAIAY 86 (289)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--------CCCCEEEecCC--C-HHHHHHH
Confidence 44688999999999999999999999999999999999998887665432 2233322 232 2 2333444
Q ss_pred HHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHHhcC----CCCCCCCCHHHHHhh
Q 044091 201 VINVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKVKDG----LIEPNDVSESLIEQE 257 (275)
Q Consensus 201 i~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v~~g----~l~~edI~e~~i~~~ 257 (275)
.+.+++. ..+..+-+.=.| -+.++|.+-.+++++.+.-. ...--+++.+++.+-
T Consensus 87 a~~a~~~---Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~~g~~l~~~~l~~L 146 (289)
T cd00951 87 AQAAEKA---GADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNRANAVLTADSLARL 146 (289)
T ss_pred HHHHHHh---CCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHH
Confidence 4444443 333333333334 36789999999998753110 011235666666543
No 39
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=70.70 E-value=34 Score=26.39 Aligned_cols=64 Identities=19% Similarity=0.129 Sum_probs=45.4
Q ss_pred CCC-CEEEEE--ecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHH
Q 044091 93 SMP-RHVAVI--MDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLM 163 (275)
Q Consensus 93 ~iP-rHIAiI--mDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm 163 (275)
.+| +||..+ ++-+.. .....+..=.+.+.++++.|.+.+++.|.+=++++.++.=|.+++..+|
T Consensus 52 ~l~~~~Iih~v~P~~~~~-------~~~~~~~~L~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 52 NLPCKYIIHAVGPTYNSP-------GEKNSYEALESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp TSSSSEEEEEEEEETTTS-------TSTTHHHHHHHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred CccccceEEEecceeccc-------cccccHHHHHHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 444 787655 664321 1222333444556667777888999999999999999999999998876
No 40
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=69.54 E-value=36 Score=30.85 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=45.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCC-CCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW-FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG 188 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~-kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG 188 (275)
-..++.+.+.+.++.|.++|++.|.++.. +.+ ... .+.-++.+.+.+++..+...+.||++-+-.
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~---~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 88 VRQQGLEIMEKAIQLARDLGIRTIQLAGY--DVYYEEH---DEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEecCc--ccccCcC---CHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 34567889999999999999999987432 111 111 123355566677777777888999998864
No 41
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=69.35 E-value=44 Score=27.52 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEEe---eecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 125 KSLKTLVELCCKWGIRVLTVFA---FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 125 ~~l~eiv~wc~~~GI~~lTvYa---FSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
.....+-+||.+.|+..+-+|. .|..|+.|| +.+.|++. +.+..+.+-++=++++|..++...+
T Consensus 22 ~Q~~~l~~~a~~~g~~i~~~~~D~~~SG~~~~Rp--~l~~ll~~-----------~~~g~vd~vvv~~ldRl~R~~~d~~ 88 (140)
T cd03770 22 NQKAILEEYAKENGLENIRHYIDDGFSGTTFDRP--GFNRMIED-----------IEAGKIDIVIVKDMSRLGRNYLKVG 88 (140)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcCCCcCCcCCCH--HHHHHHHH-----------HHcCCCCEEEEeccchhccCHHHHH
Confidence 3355667789999998888885 577788776 33444432 3344566777778888888877766
Q ss_pred HHHHHHhc
Q 044091 202 INVVETTK 209 (275)
Q Consensus 202 ~~~e~~T~ 209 (275)
.-++....
T Consensus 89 ~~~~~l~~ 96 (140)
T cd03770 89 LYMEILFP 96 (140)
T ss_pred HHHHHHHh
Confidence 66665443
No 42
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=69.14 E-value=46 Score=30.31 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=69.0
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--.+.+.+.++|+.+.||.-+.+...+.|.+.=+.+|...+.+...+... ..+.|- +|-... .+.+.+
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~--------~~~~vi-~gv~~~---~~~~~i 82 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA--------GRVPVI-AGVGAN---STREAI 82 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC--------CCCeEE-EecCCc---cHHHHH
Confidence 44788999999999999999999999999999999999999887776542 123322 233221 123333
Q ss_pred HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHH
Q 044091 202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMK 238 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~ 238 (275)
+.+........+..+-+.=.| -+.+++++-.+++++.
T Consensus 83 ~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~ 121 (281)
T cd00408 83 ELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA 121 (281)
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc
Confidence 333333332333333222212 3579999999999876
No 43
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=68.12 E-value=58 Score=30.40 Aligned_cols=106 Identities=15% Similarity=0.099 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--.+.+.+.++|+.+.||.-|.+-..+.|.+.=+.+|...+++...+... .++.|- .|-.. ..+.+.+
T Consensus 18 iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~--------g~~pvi-~gv~~---~~t~~ai 85 (294)
T TIGR02313 18 IDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA--------GRIPFA-PGTGA---LNHDETL 85 (294)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC--------CCCcEE-EECCc---chHHHHH
Confidence 44688999999999999999999999999999999999999887665432 234332 23221 1233344
Q ss_pred HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHH
Q 044091 202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKV 239 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v 239 (275)
+.+....+...+..+-+.=-| -+.++|++-.+.+++.+
T Consensus 86 ~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 86 ELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred HHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 433333332333222222112 25699999999999864
No 44
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=67.76 E-value=31 Score=29.77 Aligned_cols=83 Identities=22% Similarity=0.191 Sum_probs=54.7
Q ss_pred CCCCEEEEEecCCchHHHHcCCCCCcchhhhHHH-----HHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHH
Q 044091 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKS-----LKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLE 167 (275)
Q Consensus 93 ~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~-----l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~ 167 (275)
.-|.|+++..|+.+..=|..-.|...+++..... +..+-+++..+||+.+..= --|-++++..+.
T Consensus 49 ~~p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~----------g~EADDvIatla 118 (169)
T PF02739_consen 49 FKPDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEVP----------GYEADDVIATLA 118 (169)
T ss_dssp TTEEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEET----------TB-HHHHHHHHH
T ss_pred cCCceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecCC----------CCcHHHHHHHHH
Confidence 3489999999987764455556777788776432 4457777888999877652 247888887766
Q ss_pred HhHHHHHHHhhcCCcEEEE-ecCCCC
Q 044091 168 SGVKEEKESFIRERIRISV-IGDTSK 192 (275)
Q Consensus 168 ~~l~~~~~~~~~~~irvr~-iGd~~~ 192 (275)
..+. +.|..|.+ .||.|.
T Consensus 119 ~~~~-------~~~~~v~IvS~DkD~ 137 (169)
T PF02739_consen 119 KKAS-------EEGFEVIIVSGDKDL 137 (169)
T ss_dssp HHHH-------HTTCEEEEE-SSGGG
T ss_pred hhhc-------cCCCEEEEEcCCCCH
Confidence 6543 23455554 567664
No 45
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=66.39 E-value=48 Score=27.31 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
...+...+++.-|.+.|...+-++.= ++ -+..++|-...-.+.++.+..+++++-++||.+.- ..-+.+
T Consensus 19 ~~~qdalDLi~~~~~~~~~~i~l~~~---~l------~~dFF~L~TglAGeiLQKf~NY~iklAivGD~s~~--~~S~~l 87 (113)
T PF13788_consen 19 SDEQDALDLIGTAYEHGADRIILPKE---AL------SEDFFDLRTGLAGEILQKFVNYRIKLAIVGDFSAY--ATSKSL 87 (113)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEEhH---HC------CHHHHHhhcchHHHHHHHHHhhceeEEEEEccccc--ccchhH
Confidence 34577888999999999999999872 21 12334443333334556788899999999999876 223445
Q ss_pred HHHHHHhcCCCceEEEE
Q 044091 202 INVVETTKNNTRFQLIV 218 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lni 218 (275)
++....+ |.+-++++
T Consensus 88 ~dfi~Es--N~G~~~~F 102 (113)
T PF13788_consen 88 RDFIYES--NRGNHFFF 102 (113)
T ss_pred HHHHHHh--cCCCeEEE
Confidence 5544432 44445555
No 46
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=66.30 E-value=53 Score=30.37 Aligned_cols=105 Identities=13% Similarity=0.148 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHHHHc-CCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHH
Q 044091 122 AGVKSLKTLVELCCKW-GIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISV-IGDTSKLPKCLEE 199 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~-GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~-iGd~~~LP~~l~~ 199 (275)
--.+.+.+.++|+.+. |+.-+.+...++|-+.=+.+|-..+++...+... ..+.|-+ +|..+ .++..+
T Consensus 18 iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~--------~~~~viagv~~~~--~~~ai~ 87 (288)
T cd00954 18 INEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK--------GKVTLIAHVGSLN--LKESQE 87 (288)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--------CCCeEEeccCCCC--HHHHHH
Confidence 3467889999999999 9999999999999999999999998887666432 2233322 23322 233333
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHH
Q 044091 200 LVINVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKV 239 (275)
Q Consensus 200 ~i~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v 239 (275)
..+.+++ ..-+..+-+.=-| -+.+||++-.+.+++.+
T Consensus 88 ~a~~a~~---~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 88 LAKHAEE---LGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHHHHHH---cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 3334433 3334333333223 25799999999998765
No 47
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=62.25 E-value=1.2e+02 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHcCCCe---EEEEeeecCCCCC
Q 044091 122 AGVKSLKTLVELCCKWGIRV---LTVFAFSSDNWFR 154 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~---lTvYaFSteN~kR 154 (275)
.-+..+..+++||.+.||+. ..+|....-.|-.
T Consensus 13 ~n~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~ 48 (254)
T smart00633 13 FNFSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVF 48 (254)
T ss_pred cChHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhh
Confidence 44677888999999999994 4566555556644
No 48
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=61.97 E-value=85 Score=29.38 Aligned_cols=105 Identities=10% Similarity=0.035 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--.+.+.++++|..+.||.-+.+..-+.|-+.=+.+|-..+++...+... ..+.|-+ |-... -.+..+.+
T Consensus 25 iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~--------~~~pvi~-gv~~~-t~~~i~~~ 94 (303)
T PRK03620 25 FDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA--------GRVPVIA-GAGGG-TAQAIEYA 94 (303)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--------CCCcEEE-ecCCC-HHHHHHHH
Confidence 44688999999999999999999999999999999999998887665432 1233322 22112 13333444
Q ss_pred HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHH
Q 044091 202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKV 239 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v 239 (275)
+.+++. ..+..+-+.=-| .+.++|.+-.+++++.+
T Consensus 95 ~~a~~~---Gadav~~~pP~y~~~~~~~i~~~f~~va~~~ 131 (303)
T PRK03620 95 QAAERA---GADGILLLPPYLTEAPQEGLAAHVEAVCKST 131 (303)
T ss_pred HHHHHh---CCCEEEECCCCCCCCCHHHHHHHHHHHHHhC
Confidence 444433 333333333223 46799999999998764
No 49
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=61.58 E-value=29 Score=32.30 Aligned_cols=106 Identities=18% Similarity=0.228 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHH---HHHhHHHHHHHhhcCCcEEE---Eec-CCCCCCH
Q 044091 123 GVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSL---LESGVKEEKESFIRERIRIS---VIG-DTSKLPK 195 (275)
Q Consensus 123 G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l---~~~~l~~~~~~~~~~~irvr---~iG-d~~~LP~ 195 (275)
|+.+ .+.++|..+.+++.+++ +|-.+| +-+..++.+ .++|++.. ..+.++|+||- .+| +.-.+--
T Consensus 96 Gfvd-E~~~eklk~~~vdvvsL-DfvgDn-----~vIk~vy~l~ksv~dyl~~l-~~L~e~~irvvpHitiGL~~gki~~ 167 (275)
T COG1856 96 GFVD-ESDLEKLKEELVDVVSL-DFVGDN-----DVIKRVYKLPKSVEDYLRSL-LLLKENGIRVVPHITIGLDFGKIHG 167 (275)
T ss_pred eecc-HHHHHHHHHhcCcEEEE-eecCCh-----HHHHHHHcCCccHHHHHHHH-HHHHHcCceeceeEEEEeccCcccc
Confidence 4444 67899999999999999 777777 778888888 77777643 44677788874 355 3333333
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEecCCCH----------HHHHHHHHHHHHHH
Q 044091 196 CLEELVINVVETTKNNTRFQLIVAVSYSGQ----------YDLVQACQRIAMKV 239 (275)
Q Consensus 196 ~l~~~i~~~e~~T~~~~~~~lniai~YgGR----------~EIv~A~r~l~~~v 239 (275)
+. ++|+-+.+ -.-+-+.|++.+.|-|. +|++.+++...+..
T Consensus 168 e~-kaIdiL~~--~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f 218 (275)
T COG1856 168 EF-KAIDILVN--YEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKF 218 (275)
T ss_pred hH-HHHHHHhc--CCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhC
Confidence 22 22222221 23456899999999885 57888777655443
No 50
>TIGR00330 glpX fructose-1,6-bisphosphatase, class II. In E. coli, GlpX is found in the glpFKX operon together with a glycerol update protein and glycerol kinase.
Probab=60.36 E-value=1.1e+02 Score=29.65 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=64.5
Q ss_pred HHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCc
Q 044091 134 CCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213 (275)
Q Consensus 134 c~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~ 213 (275)
+..-.+..|||..+ .||..+ +.++++.+-|.||+.++|-+- ...+. .....+
T Consensus 148 algk~~~dltV~vL-----dRpRH~-------------~lI~eiR~~Gari~Li~DGDV-----a~ai~----~~~~~s- 199 (321)
T TIGR00330 148 ALGKPLSDLTVTIL-----AKPRHD-------------AVIAEMQQLGVRVFAIPDGDV-----AASIL----TCMPDS- 199 (321)
T ss_pred HcCCChhHeEEEEE-----cCchHH-------------HHHHHHHHcCCeEEEeccccH-----HHHHH----HhCCCC-
Confidence 44456999999986 456653 223457788999999999762 22221 112223
Q ss_pred eEEEEEecCCCHHHHHHHHHHHHH--HHhcCCCCCC-----------CCCHHHHHhhhhcCCCCCCCCcEEE
Q 044091 214 FQLIVAVSYSGQYDLVQACQRIAM--KVKDGLIEPN-----------DVSESLIEQELETNCTEFPYPDLLI 272 (275)
Q Consensus 214 ~~lniai~YgGR~EIv~A~r~l~~--~v~~g~l~~e-----------dI~e~~i~~~L~t~~~~~PdPDLLI 272 (275)
-+-+.++.||-.|=|=++-.|-. .-.+|.+-|. +|+++..+..... ++ |+|=+.
T Consensus 200 -~vD~~~GiGGAPEGVlaAaAlkclGG~mqgrL~~~~~~~~~~~~~~~~~~~e~~r~~~~---Gi-D~~kv~ 266 (321)
T TIGR00330 200 -EVDVLYGIGGAPEGVVSAAAIRALGGDMQGRLLPRHDVKGDNEENRRIAEQEIARCKAM---GV-DVNKVL 266 (321)
T ss_pred -CeeEEEEcCCChHHHHHHHHHHhcCceeEEEEccccccccccccccCCCHHHHHHHHHc---CC-ChhhEe
Confidence 45677888888887766544421 1123444444 6788888877765 44 665443
No 51
>TIGR03586 PseI pseudaminic acid synthase.
Probab=59.33 E-value=81 Score=30.37 Aligned_cols=88 Identities=14% Similarity=0.092 Sum_probs=59.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHH
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLE 198 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~ 198 (275)
+...+.+...++.++|.+.||..+|- .|+. +.|+ ++.+.++.+.=||..+.---.+.
T Consensus 71 ~~el~~e~~~~L~~~~~~~Gi~~~st-pfd~-------~svd---------------~l~~~~v~~~KI~S~~~~n~~LL 127 (327)
T TIGR03586 71 EAHTPWEWHKELFERAKELGLTIFSS-PFDE-------TAVD---------------FLESLDVPAYKIASFEITDLPLI 127 (327)
T ss_pred HhhCCHHHHHHHHHHHHHhCCcEEEc-cCCH-------HHHH---------------HHHHcCCCEEEECCccccCHHHH
Confidence 45677888899999999999999875 4432 2222 23344566666676665454455
Q ss_pred HHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHH
Q 044091 199 ELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAM 237 (275)
Q Consensus 199 ~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~ 237 (275)
+++. .++.-|.+.-+.+.-+||..|+..+.+
T Consensus 128 ~~va--------~~gkPvilstG~~t~~Ei~~Av~~i~~ 158 (327)
T TIGR03586 128 RYVA--------KTGKPIIMSTGIATLEEIQEAVEACRE 158 (327)
T ss_pred HHHH--------hcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 5443 235566777777899999999888753
No 52
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=55.98 E-value=1.1e+02 Score=28.19 Aligned_cols=102 Identities=14% Similarity=-0.025 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHH
Q 044091 121 EAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEEL 200 (275)
Q Consensus 121 ~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~ 200 (275)
.--.+.+.+.++|..+.||.-|.+-.-+.|.+.=+.+|...+.+...+... +| +-.+|..+ ..+..+.
T Consensus 16 ~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~---------~v-i~gvg~~~--~~~ai~~ 83 (279)
T cd00953 16 KIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD---------KV-IFQVGSLN--LEESIEL 83 (279)
T ss_pred CcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC---------CE-EEEeCcCC--HHHHHHH
Confidence 344688999999999999999999999999999999999998887655321 23 33455433 3444444
Q ss_pred HHHHHHHhcCCCceEEEEEecC---CCHHHHHHHHHHHHH
Q 044091 201 VINVVETTKNNTRFQLIVAVSY---SGQYDLVQACQRIAM 237 (275)
Q Consensus 201 i~~~e~~T~~~~~~~lniai~Y---gGR~EIv~A~r~l~~ 237 (275)
.+.+++. ..+..+.+.=-| .+.++|++-.+++++
T Consensus 84 a~~a~~~---Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~ 120 (279)
T cd00953 84 ARAAKSF---GIYAIASLPPYYFPGIPEEWLIKYFTDISS 120 (279)
T ss_pred HHHHHHc---CCCEEEEeCCcCCCCCCHHHHHHHHHHHHh
Confidence 4444443 333333332223 257899999998887
No 53
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=54.67 E-value=91 Score=28.90 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHH-cCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHHH
Q 044091 123 GVKSLKTLVELCCK-WGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISV-IGDTSKLPKCLEEL 200 (275)
Q Consensus 123 G~~~l~eiv~wc~~-~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~-iGd~~~LP~~l~~~ 200 (275)
-.+.+++.++|+.+ .||.-+.+-..++|.+.=+.+|...+++...+... ..+.|-+ +|..+ +.+.
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~--------~~~~viagvg~~~-----t~~a 88 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK--------GKVKLIAQVGSVN-----TAEA 88 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC--------CCCCEEecCCCCC-----HHHH
Confidence 36788999999999 99999999999999999999999999887766542 1222222 33322 2344
Q ss_pred HHHHHHHhcCCCceEEEEEecCC---CHHHHHHHHHHHHHHHhcCC-------CCCCCCCHHHHHhh
Q 044091 201 VINVVETTKNNTRFQLIVAVSYS---GQYDLVQACQRIAMKVKDGL-------IEPNDVSESLIEQE 257 (275)
Q Consensus 201 i~~~e~~T~~~~~~~lniai~Yg---GR~EIv~A~r~l~~~v~~g~-------l~~edI~e~~i~~~ 257 (275)
++.+....+..-+..+-+ -.|- ..++|++-.+++++.+.-.- .+--+++.+.+.+-
T Consensus 89 i~~a~~a~~~Gad~v~v~-~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg~~l~~~~l~~L 154 (293)
T PRK04147 89 QELAKYATELGYDAISAV-TPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNEL 154 (293)
T ss_pred HHHHHHHHHcCCCEEEEe-CCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhccCCCHHHHHHH
Confidence 443333333333333322 3332 46899999999987642100 11235677766643
No 54
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=54.33 E-value=82 Score=29.65 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--.+.+.++++|+.+.||.-|.+..-+.|.+.=+.+|...+.+...+... .++.|- +|-.+.=.++..+.+
T Consensus 26 iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~--------grvpvi-~Gv~~~~t~~ai~~a 96 (309)
T cd00952 26 VDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA--------GRVPVF-VGATTLNTRDTIART 96 (309)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC--------CCCCEE-EEeccCCHHHHHHHH
Confidence 44788999999999999999999999999999999999998887666432 223332 233222234444554
Q ss_pred HHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHH
Q 044091 202 INVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKV 239 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v 239 (275)
+.+++. ..+..+-+.=-| .+.++|++-.+++++.+
T Consensus 97 ~~A~~~---Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 97 RALLDL---GADGTMLGRPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred HHHHHh---CCCEEEECCCcCCCCCHHHHHHHHHHHHHhC
Confidence 545443 444334333223 35799999999998764
No 55
>cd01516 FBPase_glpX Bacterial fructose-1,6-bisphosphatase, glpX-encoded. A dimeric enzyme dependent on Mg(2+). glpX-encoded FPBase (FBPase class II) differs from other members of the inositol-phosphatase superfamily by permutation of secondary structure elements. The core structure around the active site is well preserved. In E. coli, FBPase II is part of the glp regulon, which mediates growth on glycerol or sn-glycerol 3-phosphate as the sole carbon source.
Probab=53.78 E-value=1.7e+02 Score=28.18 Aligned_cols=105 Identities=19% Similarity=0.170 Sum_probs=60.5
Q ss_pred HHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCc
Q 044091 134 CCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213 (275)
Q Consensus 134 c~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~ 213 (275)
+....|..|||..+ .||..+ +.++++++-|.||+.++|-+- ...+. .....+
T Consensus 148 algk~v~dltV~vL-----dRpRH~-------------~lI~eiR~~Gari~Li~DGDV-----~~ai~----~~~~~s- 199 (309)
T cd01516 148 ALGKPVEDLTVVVL-----DRPRHA-------------ALIEEIREAGARIKLIPDGDV-----AAAIA----TALPGS- 199 (309)
T ss_pred HcCCChhHeEEEEE-----cCchHH-------------HHHHHHHHcCCeEEEeccccH-----HHHHH----HhCCCC-
Confidence 45556999999986 466653 223457788999999999762 22221 112223
Q ss_pred eEEEEEecCCCHHHHHHHHHHHH--HHHhcCCCCCCCCCHHHHHhhhhcCCCCCCCCcEEE
Q 044091 214 FQLIVAVSYSGQYDLVQACQRIA--MKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272 (275)
Q Consensus 214 ~~lniai~YgGR~EIv~A~r~l~--~~v~~g~l~~edI~e~~i~~~L~t~~~~~PdPDLLI 272 (275)
-+.+.++.||-.|=|=|+-.+- -.-.+|.+-|. +++..+..... ++-|+|=+.
T Consensus 200 -~vD~~~GiGGaPEGVlaAaAlkclGG~~qgrL~~~--~~~e~~r~~~~---Gi~D~~ki~ 254 (309)
T cd01516 200 -GVDVLMGIGGAPEGVLAAAALKCLGGEMQGRLLPR--NEEERARAREM---GITDPNKIL 254 (309)
T ss_pred -CeeEEEECCCChHHHHHHHHHHhCCceeEEEECCC--CHHHHHHHHHc---CCCChhhee
Confidence 4566778888888766654431 11124455555 35555554433 444555443
No 56
>PRK12415 fructose 1,6-bisphosphatase II; Reviewed
Probab=51.66 E-value=1.5e+02 Score=28.81 Aligned_cols=105 Identities=17% Similarity=0.118 Sum_probs=59.9
Q ss_pred HHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCc
Q 044091 134 CCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213 (275)
Q Consensus 134 c~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~ 213 (275)
+..-.++.|||..+ .||..+ +.++++++-|.||+.++|-+- ...+. |. ..+
T Consensus 149 a~~k~~~dltV~vL-----dRpRH~-------------~lI~eir~~Gari~Li~DGDV-----~~ai~-----~~-~~~ 199 (322)
T PRK12415 149 ANNKKIRDLTVIVQ-----ERERHQ-------------DIIDRVRAKGARVKLFGDGDV-----GASIA-----TA-LPG 199 (322)
T ss_pred HcCCChhHeEEEEE-----cCchHH-------------HHHHHHHHcCCeEEEeccccH-----HHHHH-----Hh-CCC
Confidence 34446899999886 466653 223457788999999999762 22222 11 122
Q ss_pred eEEEEEecCCCHHHHHHHHHHHH--HHHhcCCCCCCCCCHHHHHhhhhcCCCCCCCCcEEE
Q 044091 214 FQLIVAVSYSGQYDLVQACQRIA--MKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272 (275)
Q Consensus 214 ~~lniai~YgGR~EIv~A~r~l~--~~v~~g~l~~edI~e~~i~~~L~t~~~~~PdPDLLI 272 (275)
--+-+.++.||-.|=|=|+-.|- -.-.+|.+-|.+ ++........ ++.|+|=+.
T Consensus 200 ~~vD~~~GiGGaPEGVlaAaAlkclGG~~q~rL~~~~--~~e~~r~~~~---Gi~D~~~v~ 255 (322)
T PRK12415 200 TGIDLFVGIGGAPEGVISAAALKCLGGEMQARLVPMN--EEEEARCREM---GLEDPRQLL 255 (322)
T ss_pred CCeeEEEEcCCChHHHHHHHHHHhCCceeEEEECCCC--HHHHHHHHHc---CCcChhhee
Confidence 34567788888888776654442 111234455543 4545544433 444555443
No 57
>PRK09482 flap endonuclease-like protein; Provisional
Probab=51.28 E-value=48 Score=30.84 Aligned_cols=76 Identities=25% Similarity=0.342 Sum_probs=42.8
Q ss_pred hHHHHhccCCCCCCEEEEEecCCch---HHHHcCCCCCcchhhh-----HHHHHHHHHHHHHcCCCeEEEEeeecCCCCC
Q 044091 83 PALAEELQRESMPRHVAVIMDGNRR---WAHLRGLPVGSGYEAG-----VKSLKTLVELCCKWGIRVLTVFAFSSDNWFR 154 (275)
Q Consensus 83 ~~l~~~l~~~~iPrHIAiImDGNRR---wAk~~gl~~~~Gh~~G-----~~~l~eiv~wc~~~GI~~lTvYaFSteN~kR 154 (275)
+.+.+.++. .-|.||+|+.|+.++ |=++ =.|...+++.. ...+..+-+++..+||..+..
T Consensus 36 ~~l~~ll~~-~~p~~i~v~fD~~~~~~~fR~~-l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~~---------- 103 (256)
T PRK09482 36 HALDKLIRH-SQPTHAVAVFDGDARSSGWRHQ-LLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSWHA---------- 103 (256)
T ss_pred HHHHHHHHH-cCCCEEEEEEeCCCCCcccHHH-HhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEecc----------
Confidence 445544443 348999999998654 6222 22333333322 233444556677789877654
Q ss_pred CHHHHHHHHHHHHHhH
Q 044091 155 PEVEVEFLMSLLESGV 170 (275)
Q Consensus 155 p~~EV~~Lm~l~~~~l 170 (275)
|.-|-++++.-+...+
T Consensus 104 ~g~EADDvIatla~~~ 119 (256)
T PRK09482 104 DGNEADDLIATLAVKV 119 (256)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 3346777776555444
No 58
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=51.24 E-value=2.5e+02 Score=27.59 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=44.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhh
Q 044091 180 ERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELE 259 (275)
Q Consensus 180 ~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L~ 259 (275)
.|.|+-+.|+-++ .....+-+.+ ...--.+.++..++.++++....+.+.. +..-.++-|-..+.+.+.
T Consensus 289 ~Gkrvai~g~~~~----~~~la~~L~e---elGm~~v~v~t~~~~~~~~~~~~~~l~~----~~~v~~~~D~~~l~~~i~ 357 (427)
T PRK02842 289 RGKRVFFLPDSQL----EIPLARFLSR---ECGMELVEVGTPYLNRRFLAAELALLPD----GVRIVEGQDVERQLDRIR 357 (427)
T ss_pred CCcEEEEECCchh----HHHHHHHHHH---hCCCEEEEeCCCCCCHHHHHHHHHhccC----CCEEEECCCHHHHHHHHH
Confidence 4789999998642 2222222221 1222245666778888887666655532 222234456677777776
Q ss_pred cCCCCCCCCcEEE
Q 044091 260 TNCTEFPYPDLLI 272 (275)
Q Consensus 260 t~~~~~PdPDLLI 272 (275)
.. +|||+|
T Consensus 358 ~~-----~pDlli 365 (427)
T PRK02842 358 AL-----RPDLVV 365 (427)
T ss_pred Hc-----CCCEEE
Confidence 53 699998
No 59
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=49.70 E-value=56 Score=29.69 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=42.2
Q ss_pred HHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhH-HHH----HHHHHHHHHcCCCeEEEEeeecCCCCCCHHH
Q 044091 84 ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGV-KSL----KTLVELCCKWGIRVLTVFAFSSDNWFRPEVE 158 (275)
Q Consensus 84 ~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~-~~l----~eiv~wc~~~GI~~lTvYaFSteN~kRp~~E 158 (275)
.+.+.+...+ |.|++++.||.+..=|..=.+...+++... +.+ ..+-+++..+||+.+..-. -|
T Consensus 40 ~l~~~~~~~~-p~~~~~~fD~~~~~~R~~l~p~YK~~R~~~p~~l~~q~~~~~~~l~~~gi~~i~~~~----------~E 108 (240)
T cd00008 40 MLLKLIKEYK-PTYVAVVFDAGGKTFRHELYPEYKANRKKMPEELREQIPLIKELLEALGIPVLEIEG----------YE 108 (240)
T ss_pred HHHHHHHhcC-CCeEEEEEeCCCCcccccccHHHHcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecCC----------cC
Confidence 3333344332 899999999975433444444445555442 233 4444455568998876632 35
Q ss_pred HHHHHHHHHH
Q 044091 159 VEFLMSLLES 168 (275)
Q Consensus 159 V~~Lm~l~~~ 168 (275)
-++++..+..
T Consensus 109 ADD~ia~la~ 118 (240)
T cd00008 109 ADDVIGTLAK 118 (240)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 60
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=48.71 E-value=1.8e+02 Score=27.97 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=54.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHH
Q 044091 121 EAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEEL 200 (275)
Q Consensus 121 ~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~ 200 (275)
.-+.+...++.++|.+.||..+|- .|+. +.|+.| .+.|+.+-=||-.+.---.+.+.
T Consensus 72 ~l~~e~~~~L~~~~~~~Gi~~~st-pfd~-------~svd~l---------------~~~~v~~~KIaS~~~~n~pLL~~ 128 (329)
T TIGR03569 72 ELSEEDHRELKEYCESKGIEFLST-PFDL-------ESADFL---------------EDLGVPRFKIPSGEITNAPLLKK 128 (329)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEE-eCCH-------HHHHHH---------------HhcCCCEEEECcccccCHHHHHH
Confidence 456688999999999999998875 4532 334333 33455555556655545445544
Q ss_pred HHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Q 044091 201 VINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIA 236 (275)
Q Consensus 201 i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~ 236 (275)
+. .++.-|.+.-+...-+||..|+..+.
T Consensus 129 ~A--------~~gkPvilStGmatl~Ei~~Av~~i~ 156 (329)
T TIGR03569 129 IA--------RFGKPVILSTGMATLEEIEAAVGVLR 156 (329)
T ss_pred HH--------hcCCcEEEECCCCCHHHHHHHHHHHH
Confidence 33 23445666666778888888887774
No 61
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=47.35 E-value=2.3e+02 Score=27.46 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=60.4
Q ss_pred HHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCc
Q 044091 134 CCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213 (275)
Q Consensus 134 c~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~ 213 (275)
+....+..+||..+ .||..+ +.++++++-|.||+.++|-+- ...+.- ....+
T Consensus 151 algk~v~dltV~vL-----dRpRH~-------------~lI~eiR~~Gari~Li~DGDV-----a~ai~~----~~~~s- 202 (319)
T PRK09479 151 ALGKDVSDLTVVVL-----DRPRHE-------------ELIAEIREAGARVKLISDGDV-----AGAIAT----AFPDT- 202 (319)
T ss_pred HcCCChhHeEEEEE-----cCchHH-------------HHHHHHHHcCCeEEEeccccH-----HHHHHH----hcCCC-
Confidence 44456899999886 466653 223457788999999999762 222221 11223
Q ss_pred eEEEEEecCCCHHHHHHHHHHHH--HHHhcCCCCCCCCCHHHHHhhhhcCCCCCCCCcEEE
Q 044091 214 FQLIVAVSYSGQYDLVQACQRIA--MKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLI 272 (275)
Q Consensus 214 ~~lniai~YgGR~EIv~A~r~l~--~~v~~g~l~~edI~e~~i~~~L~t~~~~~PdPDLLI 272 (275)
-+.+.++.||-.|=|=|+-.+- -.-.+|.+-|. +++........ ++-|+|-+.
T Consensus 203 -~vD~~~GiGGaPEGVlaAaAlkclGG~mqgRL~~~--~~~e~~r~~~~---Gi~D~~kv~ 257 (319)
T PRK09479 203 -GVDILMGIGGAPEGVLAAAALKCLGGEMQGRLLPR--NEEERARAKKM---GITDLDKVL 257 (319)
T ss_pred -CeeEEEEcCcChHHHHHHHHHHhcCceeEEeECCC--CHHHHHHHHHc---CCcChhhee
Confidence 4566778888888666654432 11124555453 45555555443 444555443
No 62
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=46.48 E-value=64 Score=26.98 Aligned_cols=39 Identities=13% Similarity=0.291 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHH
Q 044091 125 KSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLM 163 (275)
Q Consensus 125 ~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm 163 (275)
...+++++.|.+.|++.|.|=++|+.++.=|+++...+|
T Consensus 94 ~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~ 132 (140)
T cd02905 94 SCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIA 132 (140)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHH
Confidence 445778889999999999999999999999999877765
No 63
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=46.12 E-value=1.8e+02 Score=27.02 Aligned_cols=123 Identities=13% Similarity=0.068 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHcC-CCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEE-EecCCCCCCHHHHH
Q 044091 122 AGVKSLKTLVELCCKWG-IRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRIS-VIGDTSKLPKCLEE 199 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~G-I~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr-~iGd~~~LP~~l~~ 199 (275)
--.+.+.+.++|+.+.| |.-|.+..-++|.+.=+.+|...+.+...+... ..+.|- -+|..+ .++..+
T Consensus 18 iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~--------~~~pvi~gv~~~~--t~~~i~ 87 (290)
T TIGR00683 18 INEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK--------DQIALIAQVGSVN--LKEAVE 87 (290)
T ss_pred cCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC--------CCCcEEEecCCCC--HHHHHH
Confidence 44688999999999999 999999999999999999999998887666432 123322 133332 344445
Q ss_pred HHHHHHHHhcCCCceEEEEEecC--CCHHHHHHHHHHHHHHHhcCC--------CCCCCCCHHHHHhh
Q 044091 200 LVINVVETTKNNTRFQLIVAVSY--SGQYDLVQACQRIAMKVKDGL--------IEPNDVSESLIEQE 257 (275)
Q Consensus 200 ~i~~~e~~T~~~~~~~lniai~Y--gGR~EIv~A~r~l~~~v~~g~--------l~~edI~e~~i~~~ 257 (275)
..+.+++. .-+..+-+.=.| .+.+||++-.+++++....-. .+--+++.+++.+-
T Consensus 88 la~~a~~~---Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 88 LGKYATEL---GYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred HHHHHHHh---CCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHHHHHHH
Confidence 55555443 333333332222 246999999999987531111 12246777777644
No 64
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=44.98 E-value=1.1e+02 Score=28.86 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCC-----------CCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec--
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDN-----------WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG-- 188 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN-----------~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG-- 188 (275)
.-++.+..+++||.+.||+ +|-+|.+- |+..+. +.+.+....+...++|+++-+-.
T Consensus 45 ~Nl~~l~~~l~~~~~~~I~---~~R~sS~l~P~~~h~~~~~w~~~~~--------~~~~~~~~g~~~~~~~irls~Hp~y 113 (303)
T PRK02308 45 SNLENLLRILKYNIAHGIG---LFRLSSSLIPLATHPELEGWDYIEP--------FKEELREIGEFIKEHNIRLSFHPDQ 113 (303)
T ss_pred HHHHHHHHHHHHHHHCCCC---EEEcccCcCCCCCChhhcccCCCCC--------CHHHHHHHHHHHHHcCCCeeccChh
Confidence 4478899999999999965 56666532 432221 11112222223344566654432
Q ss_pred --CCCCCCHHHH-HHHHHHHHHhc-----CCC---ceEEEEEecCCCHHHHHH
Q 044091 189 --DTSKLPKCLE-ELVINVVETTK-----NNT---RFQLIVAVSYSGQYDLVQ 230 (275)
Q Consensus 189 --d~~~LP~~l~-~~i~~~e~~T~-----~~~---~~~lniai~YgGR~EIv~ 230 (275)
++..-.+++. +.++.++.... +-. .+++..+..||++++-.+
T Consensus 114 ~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~~~~ke~al~ 166 (303)
T PRK02308 114 FVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGGAYGDKEKALE 166 (303)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCccCCCHHHHHH
Confidence 2233233343 33444433221 223 567778888899977443
No 65
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=44.72 E-value=96 Score=29.01 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=46.3
Q ss_pred HHHHHcCCCeEEEEe-----eecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec-CCCCCC--HHHHHHHHH
Q 044091 132 ELCCKWGIRVLTVFA-----FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG-DTSKLP--KCLEELVIN 203 (275)
Q Consensus 132 ~wc~~~GI~~lTvYa-----FSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG-d~~~LP--~~l~~~i~~ 203 (275)
+.+.+.|++.+.+|. |+..|++++.+|+-..+.-+.++ ....|.++++.- |...-+ ..+..-+.+
T Consensus 81 e~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~-------a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~ 153 (279)
T cd07947 81 KLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEE-------ALDHGIKPRCHLEDITRADIYGFVLPFVNK 153 (279)
T ss_pred HHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHH-------HHHCCCeEEEEEEcccCCCcccchHHHHHH
Confidence 445677999999984 33478999988866655433333 344577777744 333322 222233333
Q ss_pred HHHHhc-CCCceEEEEEecCC
Q 044091 204 VVETTK-NNTRFQLIVAVSYS 223 (275)
Q Consensus 204 ~e~~T~-~~~~~~lniai~Yg 223 (275)
+-+.-. ...+..+++|=..|
T Consensus 154 ~~~~~~~~G~~~~i~l~DTvG 174 (279)
T cd07947 154 LMKLSKESGIPVKIRLCDTLG 174 (279)
T ss_pred HHHHHHHCCCCEEEEeccCCC
Confidence 322211 12333577775555
No 66
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=44.71 E-value=1.7e+02 Score=27.54 Aligned_cols=105 Identities=14% Similarity=0.200 Sum_probs=64.5
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCC-------------CHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEe
Q 044091 121 EAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFR-------------PEVEVEFLMSLLESGVKEEKESFIRERIRISVI 187 (275)
Q Consensus 121 ~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kR-------------p~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~i 187 (275)
..-.+..++.++++.+.|++++.| -+-|.. +...+..| .+-..++||.|-+.
T Consensus 28 g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~~d~~~~~~~~dl~el-----------v~Ya~~KgVgi~lw 92 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDDFDFTKPIPDFDLPEL-----------VDYAKEKGVGIWLW 92 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT--TT-B-TT--HHHH-----------HHHHHHTT-EEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEe----ccccccccccccccccccCCccCHHHH-----------HHHHHHcCCCEEEE
Confidence 345789999999999999999999 356753 22222222 22356789999999
Q ss_pred cCCCC------CCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCC
Q 044091 188 GDTSK------LPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLI 244 (275)
Q Consensus 188 Gd~~~------LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l 244 (275)
.+-.- +.....+.+...++. +-.++++- +=-+..+++++--+++++++++-+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~f~~~~~~--Gv~GvKid--F~~~d~Q~~v~~y~~i~~~AA~~~L 151 (273)
T PF10566_consen 93 YHSETGGNVANLEKQLDEAFKLYAKW--GVKGVKID--FMDRDDQEMVNWYEDILEDAAEYKL 151 (273)
T ss_dssp EECCHTTBHHHHHCCHHHHHHHHHHC--TEEEEEEE----SSTSHHHHHHHHHHHHHHHHTT-
T ss_pred EeCCcchhhHhHHHHHHHHHHHHHHc--CCCEEeeC--cCCCCCHHHHHHHHHHHHHHHHcCc
Confidence 87654 444334444444432 22344444 4455778999999999888776544
No 67
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=43.81 E-value=2.5e+02 Score=27.34 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHHHHc-CCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHH
Q 044091 122 AGVKSLKTLVELCCKW-GIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEEL 200 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~-GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~ 200 (275)
...+.+.++++...+. |++.+++.-+-+|-+-|+......+.+++.++ ....++.+.+..|-.+|.++..+.
T Consensus 48 ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~-------~~~~~i~~~i~TNG~ll~~e~~~~ 120 (412)
T PRK13745 48 MSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKY-------ARGRQIDNCIQTNGTLLTDEWCEF 120 (412)
T ss_pred CCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHH-------cCCCceEEEEeecCEeCCHHHHHH
Confidence 5567888888887764 78888775456899888765444444433322 234567777888888888876655
Q ss_pred HHHHHHHhcCCCceEEEEEecCCCHHHHHHHHH
Q 044091 201 VINVVETTKNNTRFQLIVAVSYSGQYDLVQACQ 233 (275)
Q Consensus 201 i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r 233 (275)
+.+ . + +.|.++-+|-+|+-++.|
T Consensus 121 l~~------~--~--~~v~ISlDG~~~~hD~~R 143 (412)
T PRK13745 121 FRE------N--N--FLVGVSIDGPQEFHDEYR 143 (412)
T ss_pred HHH------c--C--eEEEEEecCCHHHhhhhc
Confidence 442 1 1 367777777777666554
No 68
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=42.76 E-value=2.9e+02 Score=26.49 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=26.9
Q ss_pred EEEEecCCchHHHHcCCCCCc-----chhhhHHHHHHHHHHHHHcCCCeEEEE
Q 044091 98 VAVIMDGNRRWAHLRGLPVGS-----GYEAGVKSLKTLVELCCKWGIRVLTVF 145 (275)
Q Consensus 98 IAiImDGNRRwAk~~gl~~~~-----Gh~~G~~~l~eiv~wc~~~GI~~lTvY 145 (275)
+-.++-|+.++..-+.++... .+..|......+ ..++||+++...
T Consensus 189 ~~~~~~~~~~~~~i~~~~~A~~niv~~~~~~~~~a~~L---~~r~GiP~~~~~ 238 (406)
T cd01967 189 VNATFTGDGTVDELRRAHRAKLNLVHCSRSMNYLAREM---EERYGIPYMEVN 238 (406)
T ss_pred EEEEeCCCCCHHHHhhCccCCEEEEEChHHHHHHHHHH---HHhhCCCEEEec
Confidence 334456788888888877643 333443333322 345899998753
No 69
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=42.54 E-value=32 Score=37.57 Aligned_cols=86 Identities=20% Similarity=0.302 Sum_probs=50.7
Q ss_pred EecCCchHHHHcCCCCCc------------ch----------hhhH--------HHHHHHHHHHHHcCCCeEEEEeeecC
Q 044091 101 IMDGNRRWAHLRGLPVGS------------GY----------EAGV--------KSLKTLVELCCKWGIRVLTVFAFSSD 150 (275)
Q Consensus 101 ImDGNRRwAk~~gl~~~~------------Gh----------~~G~--------~~l~eiv~wc~~~GI~~lTvYaFSte 150 (275)
|+=||+||+..+|.+..+ || ..|+ ......+....++|| -+|..+.+
T Consensus 672 i~iGN~~~~~r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~Gi---~v~mLTGD 748 (951)
T KOG0207|consen 672 VLIGNKEWMSRNGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMGI---KVVMLTGD 748 (951)
T ss_pred EeechHHHHHhcCCCCchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcCc---eEEEEcCC
Confidence 566999999999987541 11 1111 123456667777884 46778889
Q ss_pred CCC---CCHHHHHHHHHHHHHhH----HHHHHHhhcCCcEEEEecCC
Q 044091 151 NWF---RPEVEVEFLMSLLESGV----KEEKESFIRERIRISVIGDT 190 (275)
Q Consensus 151 N~k---Rp~~EV~~Lm~l~~~~l----~~~~~~~~~~~irvr~iGd~ 190 (275)
||+ |-.+||- +-+...+.+ .+....+++++-++-.+||-
T Consensus 749 n~~aA~svA~~VG-i~~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDG 794 (951)
T KOG0207|consen 749 NDAAARSVAQQVG-IDNVYAEVLPEQKAEKIKEIQKNGGPVAMVGDG 794 (951)
T ss_pred CHHHHHHHHHhhC-cceEEeccCchhhHHHHHHHHhcCCcEEEEeCC
Confidence 974 3334444 111111111 02345677888888889985
No 70
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=42.34 E-value=2.3e+02 Score=24.79 Aligned_cols=97 Identities=12% Similarity=0.171 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
.|.+.+.++++.+.+.|+..+.++-. -+. ...+ .+...++++...++...=.......+
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~----------~v~----~~~~-------~l~~~~~~v~~~~~fp~g~~~~~~k~ 72 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPC----------FVP----LARE-------ALKGSGVKVCTVIGFPLGATTTEVKV 72 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHH----------HHH----HHHH-------HcCCCCcEEEEEEecCCCCCcHHHHH
Confidence 47899999999999999999988742 111 1222 22334677777766544333333444
Q ss_pred HHHHHHhc---CCCceEEEEEecCCCHHH-HHHHHHHHHHHH
Q 044091 202 INVVETTK---NNTRFQLIVAVSYSGQYD-LVQACQRIAMKV 239 (275)
Q Consensus 202 ~~~e~~T~---~~~~~~lniai~YgGR~E-Iv~A~r~l~~~v 239 (275)
.++++.=+ +--++.+|+..-++|.++ +.+-+.++++.+
T Consensus 73 ~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~ 114 (203)
T cd00959 73 AEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEAC 114 (203)
T ss_pred HHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhc
Confidence 44444333 222345555444455543 555566665554
No 71
>PRK12388 fructose-1,6-bisphosphatase II-like protein; Reviewed
Probab=42.04 E-value=2.4e+02 Score=27.30 Aligned_cols=73 Identities=12% Similarity=0.120 Sum_probs=46.6
Q ss_pred HHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCc
Q 044091 134 CCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213 (275)
Q Consensus 134 c~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~ 213 (275)
+..-.+..|||..+ .||..+ +.++++++-|.||+.+.|-+- ...+. .....+
T Consensus 148 algk~v~dltV~vL-----dRpRH~-------------~lI~eiR~~GarI~Li~DGDV-----a~ai~----~~~~~s- 199 (321)
T PRK12388 148 ALGKPLDKLRMVTL-----DKPRLS-------------AAIEEATQLGVKVFALPDGDV-----AASVL----TCWQDN- 199 (321)
T ss_pred HcCCChhHeEEEEE-----cCchHH-------------HHHHHHHHcCCeEEEeccccH-----HHHHH----HhCCCC-
Confidence 44456999999886 466653 223457788999999999762 22211 112233
Q ss_pred eEEEEEecCCCHHHHHHHHHHH
Q 044091 214 FQLIVAVSYSGQYDLVQACQRI 235 (275)
Q Consensus 214 ~~lniai~YgGR~EIv~A~r~l 235 (275)
-+.+.++.||-.|=|=|+-.|
T Consensus 200 -~vD~~~GiGGAPEGVlaAaAl 220 (321)
T PRK12388 200 -PYDVMYTIGGAPEGVISACAV 220 (321)
T ss_pred -CeeEEEEcCCChHHHHHHHHH
Confidence 456778888888877665444
No 72
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=42.01 E-value=26 Score=29.15 Aligned_cols=32 Identities=13% Similarity=0.344 Sum_probs=23.6
Q ss_pred EEecCCCHHHHHHHHHHHHHHH-hcCCCCCCCC
Q 044091 218 VAVSYSGQYDLVQACQRIAMKV-KDGLIEPNDV 249 (275)
Q Consensus 218 iai~YgGR~EIv~A~r~l~~~v-~~g~l~~edI 249 (275)
+.+.-+.++||.+|+++|.+++ +.++++++||
T Consensus 8 ~tv~~n~~e~I~~at~eLl~~i~~~N~l~~~dI 40 (118)
T PF07736_consen 8 TTVEENTPEEILEATRELLEEILERNELSPEDI 40 (118)
T ss_dssp EE-SSSSHHHHHHHHHHHHHHHHHHTT--GGGE
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 4567789999999999998764 5688888776
No 73
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=41.64 E-value=66 Score=25.02 Aligned_cols=34 Identities=24% Similarity=0.367 Sum_probs=26.8
Q ss_pred CcchhhhHHHHHHHHHHH-HHcCCCeEEEEeeecCC
Q 044091 117 GSGYEAGVKSLKTLVELC-CKWGIRVLTVFAFSSDN 151 (275)
Q Consensus 117 ~~Gh~~G~~~l~eiv~wc-~~~GI~~lTvYaFSteN 151 (275)
..|+--|.+.+..+++|| .++|+..+.++..+ +|
T Consensus 95 ~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~-~N 129 (142)
T PF13302_consen 95 YRGKGYGTEALKLLLDWAFEELGLHRIIATVMA-DN 129 (142)
T ss_dssp GTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEET-T-
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECc-CC
Confidence 345556789999999999 57999999998875 45
No 74
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=41.15 E-value=3.2e+02 Score=25.91 Aligned_cols=116 Identities=7% Similarity=-0.050 Sum_probs=67.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhH------------------------HHHH
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGV------------------------KEEK 174 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l------------------------~~~~ 174 (275)
.|....+.+.+.++++.+.|++.+.+- +.++.....+.+..+.+.+.+.+ .+.+
T Consensus 67 ~y~ls~eeI~e~~~~~~~~G~~~i~l~--gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l 144 (343)
T TIGR03551 67 AYLLSLEEIAERAAEAWKAGATEVCIQ--GGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEAL 144 (343)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEE--eCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHH
Confidence 466788999999999999999998875 45454445566666666665541 1334
Q ss_pred HHhhcCCcEEEEecCCCCCCHHHHHHH-----------HHHHHHhcCCC--ceEEEEEecCCCHHHHHHHHHHHHH
Q 044091 175 ESFIRERIRISVIGDTSKLPKCLEELV-----------INVVETTKNNT--RFQLIVAVSYSGQYDLVQACQRIAM 237 (275)
Q Consensus 175 ~~~~~~~irvr~iGd~~~LP~~l~~~i-----------~~~e~~T~~~~--~~~lniai~YgGR~EIv~A~r~l~~ 237 (275)
..+.+.|+.--..+..+.+++++.+.+ +-++..-+-.- ...+-+.++ .+.+|+++.+..+.+
T Consensus 145 ~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~-Et~ed~~~~l~~lr~ 219 (343)
T TIGR03551 145 KRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHV-ETPEHWVDHLLILRE 219 (343)
T ss_pred HHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecC-CCHHHHHHHHHHHHH
Confidence 557777776333233445655444322 22222111111 223344444 566788887776654
No 75
>PRK02551 flavoprotein NrdI; Provisional
Probab=40.26 E-value=87 Score=26.97 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=42.5
Q ss_pred EEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHH
Q 044091 97 HVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVK 171 (275)
Q Consensus 97 HIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~ 171 (275)
..|||=-|||-|...-++ .. -..+.+++|+.|.-|.+|.- +++|+.+.+.+.+++.
T Consensus 96 ~~gVigsGNrNfg~~F~~------------aa--~~ia~~~~vP~L~~fEl~GT-----~~Dv~~v~~~~~~~~~ 151 (154)
T PRK02551 96 CLGIIGSGNRNFNNQYCL------------TA--KQYAKRFGFPMLADFELRGT-----PSDIERIAAIIAELYA 151 (154)
T ss_pred eEEEEeecccHHHHHHHH------------HH--HHHHHHcCCCEEEEeeccCC-----HHHHHHHHHHHHHHHH
Confidence 489999999988766543 11 12367899999999999984 5778888887777664
No 76
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=40.08 E-value=1.2e+02 Score=26.52 Aligned_cols=104 Identities=8% Similarity=0.100 Sum_probs=51.9
Q ss_pred EEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEec
Q 044091 142 LTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVS 221 (275)
Q Consensus 142 lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~ 221 (275)
.-++.|+..| ..+-+++..+++.+. .....++.+-++|+..-|+..-.-.-..+++..+...++.+.-+.+
T Consensus 75 ~iIlVfDvtd-~~Sf~~l~~w~~~i~--------~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSA 145 (202)
T cd04120 75 GIILVYDITK-KETFDDLPKWMKMID--------KYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASA 145 (202)
T ss_pred EEEEEEECcC-HHHHHHHHHHHHHHH--------HhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecC
Confidence 3466777654 222344443333222 1223578899999775444211111112222222223345556777
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhh
Q 044091 222 YSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQE 257 (275)
Q Consensus 222 YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~ 257 (275)
..|. -|-++++.|++.+... + +.++....+.+.
T Consensus 146 ktg~-gV~e~F~~l~~~~~~~-~-~~~~~~~~~~~~ 178 (202)
T cd04120 146 KDNF-NVDEIFLKLVDDILKK-M-PLDILRNELSNS 178 (202)
T ss_pred CCCC-CHHHHHHHHHHHHHHh-C-ccccccccccch
Confidence 7775 6888888888766432 2 224444444433
No 77
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=40.02 E-value=16 Score=31.80 Aligned_cols=45 Identities=24% Similarity=0.475 Sum_probs=34.7
Q ss_pred cCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeec
Q 044091 103 DGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 103 DGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSt 149 (275)
|.|+|.|+....-..++| .-.-++.|++++|..+|-+.|.+ ||=.
T Consensus 20 ~~~~~~~~~aa~vE~~~Y-~~~tRveEiieFak~mgykkiGi-AfCi 64 (157)
T PF08901_consen 20 DENRKIARAAAEVEGEGY-GKLTRVEEIIEFAKRMGYKKIGI-AFCI 64 (157)
T ss_pred HHHHHHHHHHHHHhhhcc-cccchHHHHHHHHHHcCCCeeee-hhhH
Confidence 368888888765434444 22788999999999999999999 7755
No 78
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=40.01 E-value=1.9e+02 Score=24.42 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHH-HHHHHhHH
Q 044091 124 VKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLM-SLLESGVK 171 (275)
Q Consensus 124 ~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm-~l~~~~l~ 171 (275)
.+.+..+++.|.+.|++.|.+=++++.++.=|+++....| +.+.++++
T Consensus 91 ~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~ 139 (165)
T cd02908 91 ASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLE 139 (165)
T ss_pred HHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHh
Confidence 4556667777788999999999999999999999877765 66666664
No 79
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.27 E-value=3.2e+02 Score=25.41 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
.|.+-+..+.+.|.++||+.+|= .|+. ++++.+.+ .+.+--||-.+.---++.+++
T Consensus 63 ~G~~gl~~L~~~~~~~Gl~~~Te-v~d~-------~~v~~~~e----------------~vdilqIgs~~~~n~~LL~~v 118 (250)
T PRK13397 63 LGLQGIRYLHEVCQEFGLLSVSE-IMSE-------RQLEEAYD----------------YLDVIQVGARNMQNFEFLKTL 118 (250)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEe-eCCH-------HHHHHHHh----------------cCCEEEECcccccCHHHHHHH
Confidence 35677888899999999999984 5543 33444322 244445565555444444333
Q ss_pred HHHHHHhcCCCceEEEEEec-CCCHHHHHHHHHHHHH
Q 044091 202 INVVETTKNNTRFQLIVAVS-YSGQYDLVQACQRIAM 237 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai~-YgGR~EIv~A~r~l~~ 237 (275)
. .++.-|+|.=+ ...=+|+..|+..+.+
T Consensus 119 a--------~tgkPVilk~G~~~t~~e~~~A~e~i~~ 147 (250)
T PRK13397 119 S--------HIDKPILFKRGLMATIEEYLGALSYLQD 147 (250)
T ss_pred H--------ccCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2 23556777777 6677788888777753
No 80
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=39.03 E-value=2.5e+02 Score=24.81 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=59.9
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCC-C--CCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec---CCCC
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW-F--RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG---DTSK 192 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~-k--Rp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG---d~~~ 192 (275)
....+++.++++++.+.++|++.++++.-..-.- . ++...-+...+. +.+..+...+.++.+.+-= ....
T Consensus 78 ~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~----l~~l~~~a~~~~i~l~~e~~~~~~~~ 153 (274)
T COG1082 78 EREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEA----LEELAEIAEELGIGLALENHHHPGNV 153 (274)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHH----HHHHHHHHHHhCCceEEeecCCccce
Confidence 4467788889999999999999999876433221 1 222222222222 2233333344466666642 1111
Q ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEEec-CCCHHHHHHHHHHHHH
Q 044091 193 LPKCLEELVINVVETTKNNTRFQLIVAVS-YSGQYDLVQACQRIAM 237 (275)
Q Consensus 193 LP~~l~~~i~~~e~~T~~~~~~~lniai~-YgGR~EIv~A~r~l~~ 237 (275)
+... ...+..+.+.+..+.++.+-++=- +.|. +...+.++...
T Consensus 154 ~~~~-~~~~~~~~~~~~~~v~~~lD~~H~~~~~~-d~~~~~~~~~~ 197 (274)
T COG1082 154 VETG-ADALDLLREVDSPNVGLLLDTGHAFFAGE-DPLEAIRKLGD 197 (274)
T ss_pred eecC-HHHHHHHHhcCCCceEEEEecCchhhccC-CHHHHHHHhhc
Confidence 1211 234555666655555555544422 2223 66666666654
No 81
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=38.15 E-value=3.9e+02 Score=26.02 Aligned_cols=113 Identities=15% Similarity=0.242 Sum_probs=64.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCC---CCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCC-----
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW---FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDT----- 190 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~---kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~----- 190 (275)
=+..-+..+...++||...||+ +|-||..-| ..+..+--.....+..-|.+--+...+.++|+-+--|-
T Consensus 67 l~~~Nl~~l~r~l~~~~~~~I~---lyRlSSsLfPla~h~~~~g~~~l~~~~~eL~evGe~a~~~~~Rl~~HPdQf~vl~ 143 (347)
T COG4294 67 LYKQNLLNLIRLLEYNHAHGIR---LYRLSSSLFPLADHADTKGWYTLEFIQSELEEVGELANKHNHRLTMHPDQFTVLN 143 (347)
T ss_pred HHHHHHHHHHHHHHHHHhcCce---EEEecccccccccCccchhHHHHHHHHHHHHHHHHHHHhhCceeeecCCceEEec
Confidence 3556678899999999999975 788887654 23332333333444444444345577788888664432
Q ss_pred CCCCHHHHHHHHHHHHHhc-----C---CCceEEEEEecCCCHHHHHHHHHH
Q 044091 191 SKLPKCLEELVINVVETTK-----N---NTRFQLIVAVSYSGQYDLVQACQR 234 (275)
Q Consensus 191 ~~LP~~l~~~i~~~e~~T~-----~---~~~~~lniai~YgGR~EIv~A~r~ 234 (275)
+-=|+=+..+++.+.-.-+ + .+-..|.++--||||++=.+-..+
T Consensus 144 S~~~eV~~ssir~layH~r~l~~mgl~~Rs~~~lhlgg~~gGK~~~~eqf~k 195 (347)
T COG4294 144 SPREEVVDSSIRDLAYHYRILDGMGLAERSVWNLHLGGTHGGKKERLEQFIK 195 (347)
T ss_pred CCchHHHHHHHHHHHHHHHHHhhcCCCcCCceEEEeccccCCchhHHHHHHH
Confidence 1113333444444332211 1 223344455599999876655443
No 82
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=38.06 E-value=90 Score=29.68 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=41.6
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKE 175 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~ 175 (275)
+-|||+||= =.-++-++++++.|...|| -||..=-+ .-+...+++..+ + .+.
T Consensus 148 kVIAIVMD~----------------FTD~dIf~DLleAa~kR~V---pVYiLLD~------~~~~~Fl~Mc~~-~--~v~ 199 (284)
T PF07894_consen 148 KVIAIVMDV----------------FTDVDIFCDLLEAANKRGV---PVYILLDE------QNLPHFLEMCEK-L--GVN 199 (284)
T ss_pred ceeEEEeec----------------cccHHHHHHHHHHHHhcCC---cEEEEech------hcChHHHHHHHH-C--CCC
Confidence 569999992 1336889999999988887 46664221 123333333222 1 122
Q ss_pred HhhcCCcEEEEecCCC
Q 044091 176 SFIRERIRISVIGDTS 191 (275)
Q Consensus 176 ~~~~~~irvr~iGd~~ 191 (275)
..+-.++|||.++=..
T Consensus 200 ~~~~~nmrVRsv~G~~ 215 (284)
T PF07894_consen 200 LQHLKNMRVRSVTGCT 215 (284)
T ss_pred hhhcCCeEEEEecCCe
Confidence 3445689999987543
No 83
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=38.06 E-value=3.5e+02 Score=25.43 Aligned_cols=106 Identities=20% Similarity=0.163 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
--.+.+.++++|..+.||.-|-+.-.+.|...=+.+|-..+++...+.... .+.| +.|--+. .+.+++
T Consensus 22 vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~g--------rvpv-iaG~g~~---~t~eai 89 (299)
T COG0329 22 VDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGG--------RVPV-IAGVGSN---STAEAI 89 (299)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCC--------CCcE-EEecCCC---cHHHHH
Confidence 457889999999999999999999999999999999999998877765532 2322 2233221 234555
Q ss_pred HHHHHHhcCCCceEEEEEe--cCCCHHHHHHHHHHHHHHH
Q 044091 202 INVVETTKNNTRFQLIVAV--SYSGQYDLVQACQRIAMKV 239 (275)
Q Consensus 202 ~~~e~~T~~~~~~~lniai--~YgGR~EIv~A~r~l~~~v 239 (275)
+.+....+-.-+-.+-+.= .-.+.+++.+-.+.+++.+
T Consensus 90 ~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~ 129 (299)
T COG0329 90 ELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAV 129 (299)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhc
Confidence 5555544444444444433 3356788888899988876
No 84
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.20 E-value=3e+02 Score=24.45 Aligned_cols=118 Identities=13% Similarity=0.264 Sum_probs=76.4
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHH
Q 044091 121 EAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEEL 200 (275)
Q Consensus 121 ~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~ 200 (275)
.+|-++++.+.+--..=--..|-||+... ++ -++.+...+.+ ...+...+|.|-..|+..-|.++-...
T Consensus 65 TAGQErFRSVtRsYYRGAAGAlLVYD~Ts------rd----sfnaLtnWL~D-aR~lAs~nIvviL~GnKkDL~~~R~Vt 133 (214)
T KOG0086|consen 65 TAGQERFRSVTRSYYRGAAGALLVYDITS------RD----SFNALTNWLTD-ARTLASPNIVVILCGNKKDLDPEREVT 133 (214)
T ss_pred cccHHHHHHHHHHHhccccceEEEEeccc------hh----hHHHHHHHHHH-HHhhCCCcEEEEEeCChhhcChhhhhh
Confidence 46778888888766555567788998643 12 23444555543 344677899999999987776654333
Q ss_pred HHHHHHHhcCCCceEEEEEecCCCH---HHHHHHHHHHHHHHhcCCCCCCCCC
Q 044091 201 VINVVETTKNNTRFQLIVAVSYSGQ---YDLVQACQRIAMKVKDGLIEPNDVS 250 (275)
Q Consensus 201 i~~~e~~T~~~~~~~lniai~YgGR---~EIv~A~r~l~~~v~~g~l~~edI~ 250 (275)
..++.+- .+-+.+...=-.+|.|. +-.+..++++...++.|+++|+++.
T Consensus 134 flEAs~F-aqEnel~flETSa~TGeNVEEaFl~c~~tIl~kIE~GElDPer~g 185 (214)
T KOG0086|consen 134 FLEASRF-AQENELMFLETSALTGENVEEAFLKCARTILNKIESGELDPERMG 185 (214)
T ss_pred HHHHHhh-hcccceeeeeecccccccHHHHHHHHHHHHHHHHhhcCCCHHHcc
Confidence 3333322 22233434444667774 5678888999999999999988764
No 85
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=36.51 E-value=1.1e+02 Score=24.67 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecC
Q 044091 126 SLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGD 189 (275)
Q Consensus 126 ~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd 189 (275)
.+.++++.+..-.+..|=||.. +-+.|...|...+++. +...||+|.++.+
T Consensus 53 ~l~~ll~~~~~g~~~~ivv~~~--~Rl~R~~~~~~~~~~~-----------l~~~gi~l~~~~~ 103 (148)
T smart00857 53 GLQRLLADLRAGDIDVLVVYKL--DRLGRSLRDLLALLEL-----------LEKKGVRLVSVTE 103 (148)
T ss_pred HHHHHHHHHHcCCCCEEEEecc--chhhCcHHHHHHHHHH-----------HHHCCCEEEECcC
Confidence 3455556565555666666554 5688877765555443 4567888888654
No 86
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=36.15 E-value=1.4e+02 Score=28.60 Aligned_cols=29 Identities=7% Similarity=0.173 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSD 150 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSte 150 (275)
+..+.+.+.++++.++|+.++++|.++.+
T Consensus 163 qt~e~~~~~l~~~~~l~~~~is~y~l~~~ 191 (374)
T PRK05799 163 QTLEDWKETLEKVVELNPEHISCYSLIIE 191 (374)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccEec
Confidence 45788999999999999999999998864
No 87
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=36.07 E-value=2.2e+02 Score=24.24 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHH-HHHHHhHH
Q 044091 124 VKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLM-SLLESGVK 171 (275)
Q Consensus 124 ~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm-~l~~~~l~ 171 (275)
.+.+.++++.|.+.+++.|.+=++++.++.=|++++...| +.+.+++.
T Consensus 98 ~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~ 146 (175)
T cd02907 98 KKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLE 146 (175)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556667778888999999999999999999999877755 44444443
No 88
>PRK08508 biotin synthase; Provisional
Probab=35.21 E-value=1.9e+02 Score=26.77 Aligned_cols=41 Identities=10% Similarity=-0.124 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHH
Q 044091 123 GVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLL 166 (275)
Q Consensus 123 G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~ 166 (275)
.++...+.++++.++||+.-|...+-. .-..+|+..++..+
T Consensus 135 ~~~~~l~~i~~a~~~Gi~v~sg~I~Gl---GEt~ed~~~~l~~l 175 (279)
T PRK08508 135 TWEERFQTCENAKEAGLGLCSGGIFGL---GESWEDRISFLKSL 175 (279)
T ss_pred CHHHHHHHHHHHHHcCCeecceeEEec---CCCHHHHHHHHHHH
Confidence 356667777777777776666655542 33455555555444
No 89
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=34.83 E-value=1.3e+02 Score=30.58 Aligned_cols=51 Identities=25% Similarity=0.257 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecC----------CCCCC-HHHHHHHHHHHHHhHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSD----------NWFRP-EVEVEFLMSLLESGVKE 172 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSte----------N~kRp-~~EV~~Lm~l~~~~l~~ 172 (275)
++.+.+.+.++.+.++++.++|+|.++.+ .++-| .+|...+++...+.+.+
T Consensus 333 Et~ed~~~tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~l~~ 394 (488)
T PRK08207 333 EGLEEVKHTLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEWAKE 394 (488)
T ss_pred CCHHHHHHHHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999842 12222 35677788888777763
No 90
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=34.81 E-value=3.9e+02 Score=27.32 Aligned_cols=51 Identities=10% Similarity=0.142 Sum_probs=27.2
Q ss_pred CeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHH
Q 044091 140 RVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKC 196 (275)
Q Consensus 140 ~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~ 196 (275)
+-||+|+|..++. | .+...+...+.+.|++... . ..+|+++++ |....|+.
T Consensus 48 ~pV~I~~~~s~~~--~-~~~~~~~~~v~~lL~eY~~-~-s~~i~~~~i-DP~~~~~~ 98 (552)
T TIGR03521 48 DPVSIDIFLDGEL--P-ADFRRLQKETRQLLEEFAA-Y-NPNIKFRFV-NPLEEEDE 98 (552)
T ss_pred CCEEEEEEEcCCC--c-hHHHHHHHHHHHHHHHHHH-h-CCCeEEEEe-CCCCcchh
Confidence 7799999887663 2 1222222223333333222 2 346999999 55555544
No 91
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=34.19 E-value=80 Score=29.60 Aligned_cols=67 Identities=27% Similarity=0.368 Sum_probs=43.4
Q ss_pred HHHHHcCCCeEEEEe-----eecCCCCCCHHH-HHHHHHHHHHhHHHHHHHhhcCCcEEE-----Eec---CCCCCCHHH
Q 044091 132 ELCCKWGIRVLTVFA-----FSSDNWFRPEVE-VEFLMSLLESGVKEEKESFIRERIRIS-----VIG---DTSKLPKCL 197 (275)
Q Consensus 132 ~wc~~~GI~~lTvYa-----FSteN~kRp~~E-V~~Lm~l~~~~l~~~~~~~~~~~irvr-----~iG---d~~~LP~~l 197 (275)
+.+...|.+++.+|. ||..|.+-.-+| +..+|..++. .++.+|++| ++| .-.-.|..+
T Consensus 100 ~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~ka--------A~~~ni~vRGYVScvvGCPyeG~v~P~kV 171 (316)
T KOG2368|consen 100 EAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKA--------AQEHNIRVRGYVSCVVGCPYEGAVQPSKV 171 (316)
T ss_pred HHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHH--------HHHcCCccceEEEEEecCCccCCcCHHHH
Confidence 346779999999995 899998888776 4444443332 345677766 344 223467777
Q ss_pred HHHHHHHHH
Q 044091 198 EELVINVVE 206 (275)
Q Consensus 198 ~~~i~~~e~ 206 (275)
.+..+++-+
T Consensus 172 a~V~k~ly~ 180 (316)
T KOG2368|consen 172 AEVVKKLYE 180 (316)
T ss_pred HHHHHHHHh
Confidence 666555543
No 92
>PRK09989 hypothetical protein; Provisional
Probab=33.88 E-value=3.4e+02 Score=24.21 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG 188 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG 188 (275)
...+.+.+.++.|.++|++.|.++..... ..+..+ .-.+.+.+.|++..+...+.|+++.+-+
T Consensus 82 ~~~~~l~~~i~~A~~lg~~~v~v~~g~~~-~~~~~~---~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 82 EARADIDLALEYALALNCEQVHVMAGVVP-AGEDAE---RYRAVFIDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHHHHHhCcCEEEECccCCC-CCCCHH---HHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34577899999999999999976543211 112222 2234455666666667788899987754
No 93
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=33.66 E-value=1.5e+02 Score=26.20 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHH-HHHHHhHH
Q 044091 124 VKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLM-SLLESGVK 171 (275)
Q Consensus 124 ~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm-~l~~~~l~ 171 (275)
.+.+.+.++.+.+.|++.|.|=+.|+.++.=|+++...+| +.+.+++.
T Consensus 113 ~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~ 161 (186)
T cd02904 113 EKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFV 161 (186)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3556778888889999999999999999999999988766 44555554
No 94
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=33.65 E-value=97 Score=25.47 Aligned_cols=40 Identities=18% Similarity=0.159 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHH
Q 044091 125 KSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMS 164 (275)
Q Consensus 125 ~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~ 164 (275)
+.+.++++-|.+.|++.|.+=++++.++.=|++++...|-
T Consensus 92 ~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~ 131 (137)
T cd02903 92 DIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMF 131 (137)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHH
Confidence 4456778888899999999999999999999999887653
No 95
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=33.63 E-value=5.4e+02 Score=26.33 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=74.5
Q ss_pred EEecCCchHHHHcCCCCCcchhh-hHHHHHHHHHHHH-HcCCCeEEEEeeecCCCCCCHHHHHHHHH-------HHHHhH
Q 044091 100 VIMDGNRRWAHLRGLPVGSGYEA-GVKSLKTLVELCC-KWGIRVLTVFAFSSDNWFRPEVEVEFLMS-------LLESGV 170 (275)
Q Consensus 100 iImDGNRRwAk~~gl~~~~Gh~~-G~~~l~eiv~wc~-~~GI~~lTvYaFSteN~kRp~~EV~~Lm~-------l~~~~l 170 (275)
.++-|+.+++.-+.++...--.. +......+.++.. .+||+++.+.-+-.++..+--.++..+.. ++.+..
T Consensus 233 ~~~~gg~t~~ei~~~~~A~lniv~~~~~~~~~A~~Leer~GiP~~~~~~~Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~ 312 (513)
T TIGR01861 233 STFTGNGSYDDLRGMHRAHLNVLECARSAEYICNELRKRYGIPRLDIDGFGFEPLAASLRKVAMFFGIEDEAQAIIDEET 312 (513)
T ss_pred EEeCCCCCHHHHHhhccCCEEEEECHHHHHHHHHHHHHHhCCCeEecCcCCHHHHHHHHHHHHHHhCCChhHhHhhHHHH
Confidence 45567888888887776442111 2222344555554 57999987652222322222222333222 111111
Q ss_pred HH---HHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC-HHHHHHHHHHHHHHHhcCCC
Q 044091 171 KE---EKESFIR--ERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSG-QYDLVQACQRIAMKVKDGLI 244 (275)
Q Consensus 171 ~~---~~~~~~~--~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgG-R~EIv~A~r~l~~~v~~g~l 244 (275)
.. .++.+++ .|-|+-+.|+-+. +......+.+ --++.+..++...+ .++.......+ ..+.+
T Consensus 313 ~~~r~~Ld~~~~~L~GKrvai~~gg~~----~~~~~~~l~~----ElGmevv~~~t~~~~~~d~~~~~~~~----~~~~~ 380 (513)
T TIGR01861 313 ARWKPELDWYKERLKGKKVCLWPGGSK----LWHWAHVIEE----EMGLKVVSVYSKFGHQGDMEKGVARC----GEGAL 380 (513)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchH----HHHHHHHHHH----hCCCEEEEEeccCCCHHHHHHHHHhC----CCCcE
Confidence 11 1222222 4889998888442 2222222221 23566666666554 55554433322 23333
Q ss_pred CCCCCCHHHHHhhhhcCCCCCCCCcEEEe
Q 044091 245 EPNDVSESLIEQELETNCTEFPYPDLLIR 273 (275)
Q Consensus 245 ~~edI~e~~i~~~L~t~~~~~PdPDLLIR 273 (275)
-.+|.++-...+.+.. ..|||||=
T Consensus 381 ~i~D~~~~e~~~~l~~-----~~~Dllig 404 (513)
T TIGR01861 381 AIDDPNELEGLEAMEM-----LKPDIILT 404 (513)
T ss_pred EecCCCHHHHHHHHHh-----cCCCEEEe
Confidence 3344444333344433 26999984
No 96
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=33.55 E-value=2.2e+02 Score=23.33 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=32.7
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhc-CCcEEEEecC
Q 044091 121 EAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIR-ERIRISVIGD 189 (275)
Q Consensus 121 ~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~-~~irvr~iGd 189 (275)
+.|+..+.+ .+..-.|..|-||.+ +-|.|...+...+++. +.+ .||+|.++.+
T Consensus 54 Rp~l~~ll~---~~~~g~vd~vvv~~l--dRl~R~~~d~~~~~~~-----------l~~~~gv~l~~~~~ 107 (140)
T cd03770 54 RPGFNRMIE---DIEAGKIDIVIVKDM--SRLGRNYLKVGLYMEI-----------LFPKKGVRFIAIND 107 (140)
T ss_pred CHHHHHHHH---HHHcCCCCEEEEecc--chhccCHHHHHHHHHH-----------HHhhcCcEEEEecC
Confidence 556665555 444556887777765 4577876654443332 333 4899998765
No 97
>TIGR00063 folE GTP cyclohydrolase I. GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects.
Probab=33.53 E-value=38 Score=29.99 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=21.2
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCC 135 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~ 135 (275)
-|||.|+|| .-.|+.++.++++|+.
T Consensus 82 ~hVaYiP~~---------------~ViGLSKl~RiV~~~a 106 (180)
T TIGR00063 82 AHVAYIPKD---------------KVIGLSKIARIVEFFA 106 (180)
T ss_pred EEEEEecCC---------------ceecHHHHHHHHHHHh
Confidence 599999984 3688999999999854
No 98
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=33.46 E-value=43 Score=29.87 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=36.8
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKE 175 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~ 175 (275)
-|||.|+|+ |.-.|+.++.++++|+.. |+.- .+.|-..+.+.+. +
T Consensus 87 ~hIaYiP~~--------------~~ViGLSKl~RiV~~~ar-----------------RlQi-QERLT~qIa~~l~---~ 131 (188)
T PLN03044 87 IHVGYIPNA--------------GVILGLSKLARIAEVYAR-----------------RLQT-QERLTRQIADAIV---E 131 (188)
T ss_pred EEEEEECCC--------------CccccHHHHHHHHHHHhc-----------------CcHH-HHHHHHHHHHHHH---H
Confidence 699999983 236899999999998543 4431 2233333334333 2
Q ss_pred HhhcCCcEEEEecC
Q 044091 176 SFIRERIRISVIGD 189 (275)
Q Consensus 176 ~~~~~~irvr~iGd 189 (275)
.+...||-|.+-+.
T Consensus 132 ~l~p~gVaV~ieA~ 145 (188)
T PLN03044 132 SVEPLGVMVVVEAA 145 (188)
T ss_pred hhCCCceEEEEEEE
Confidence 34566777777554
No 99
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=33.15 E-value=5.3e+02 Score=26.10 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=41.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEE-EecCCCHHHHHHH----HHHHHHHHh-cCCCCCCCCCHHH
Q 044091 180 ERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIV-AVSYSGQYDLVQA----CQRIAMKVK-DGLIEPNDVSESL 253 (275)
Q Consensus 180 ~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lni-ai~YgGR~EIv~A----~r~l~~~v~-~g~l~~edI~e~~ 253 (275)
.|-|+-+.||-++ +....+-+.+ -++.+.. +..|+++ +...+ .+.++++.- .+.+-.++-|...
T Consensus 313 ~GKrvai~Gdp~~----~i~LarfL~e-----lGmevV~vgt~~~~~-~~~~~d~~~l~~~~~~~~~~~~vive~~D~~e 382 (457)
T CHL00073 313 RGKSVFFMGDNLL----EISLARFLIR-----CGMIVYEIGIPYMDK-RYQAAELALLEDTCRKMNVPMPRIVEKPDNYN 382 (457)
T ss_pred CCCEEEEECCCcH----HHHHHHHHHH-----CCCEEEEEEeCCCCh-hhhHHHHHHHHHHhhhcCCCCcEEEeCCCHHH
Confidence 5778889999543 2333333332 4555444 4555444 43333 333332211 2334456667777
Q ss_pred HHhhhhcCCCCCCCCcEEE
Q 044091 254 IEQELETNCTEFPYPDLLI 272 (275)
Q Consensus 254 i~~~L~t~~~~~PdPDLLI 272 (275)
+.+.+... +|||+|
T Consensus 383 l~~~i~~~-----~pDLlI 396 (457)
T CHL00073 383 QIQRIREL-----QPDLAI 396 (457)
T ss_pred HHHHHhhC-----CCCEEE
Confidence 77777543 799998
No 100
>cd00642 GTP_cyclohydro1 GTP cyclohydrolase I (GTP-CH-I) catalyzes the conversion of GTP into dihydroneopterin triphosphate. The enzyme product is the precursor of tetrahydrofolate in eubacteria, fungi, and plants and of the folate analogs in methanogenic bacteria. In vertebrates and insects it is the biosynthtic precursor of tetrahydrobiopterin (BH4) which is involved in the formation of catacholamines, nitric oxide, and the stimulation of T lymphocytes. The biosynthetic reaction of BH4 is controlled by a regulatory protein GFRP which mediates feedback inhibition of GTP-CH-I by BH4. This inhibition is reversed by phenylalanine. The decameric GTP-CH-I forms a complex with two pentameric GFRP in the presence of phenylalanine or a combination of GTP and BH4, respectively.
Probab=33.15 E-value=37 Score=30.19 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=36.9
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKE 175 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~ 175 (275)
-|||.|+|| ...|+.++.++++|+.. |+.- .+.|-..+.+.+. +
T Consensus 87 ~~VaYiP~~---------------~ViGLSKl~RiV~~~ar-----------------RlQi-QERLt~qIa~al~---~ 130 (185)
T cd00642 87 VHIAYIPKD---------------KVIGLSKLARIVEFFSR-----------------RLQV-QERLTKQIAVAIQ---E 130 (185)
T ss_pred EEEEEecCC---------------eeeeHHHHHHHHHHHhc-----------------CchH-HHHHHHHHHHHHH---H
Confidence 599999983 46899999999999643 4431 2233333333333 2
Q ss_pred HhhcCCcEEEEecCC
Q 044091 176 SFIRERIRISVIGDT 190 (275)
Q Consensus 176 ~~~~~~irvr~iGd~ 190 (275)
.+...||-|.+-+..
T Consensus 131 ~l~~~gVaV~i~A~H 145 (185)
T cd00642 131 ILGPQGVAVVIEATH 145 (185)
T ss_pred hhCCCcEEEEEEEEE
Confidence 345667877776643
No 101
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=32.67 E-value=3.5e+02 Score=23.89 Aligned_cols=62 Identities=8% Similarity=-0.014 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEe
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVI 187 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~i 187 (275)
...+.+.+.++.|.++|++.|.+..-. .....+.+|. .+.+.+.|++..+...+.||++-+-
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~---~~~~~~~l~~l~~~A~~~gi~l~lE 142 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGK-RPAGVSPEEA---RATLVENLRYAADALDRIGLTLLIE 142 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCC-CCCCCCHHHH---HHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 345788899999999999999875421 1122233432 3444566666666778889998875
No 102
>PRK09347 folE GTP cyclohydrolase I; Provisional
Probab=32.45 E-value=43 Score=29.83 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=21.8
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCK 136 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~ 136 (275)
-|||.|+|| .-.|+.++..+++|+..
T Consensus 90 ~hIaYiP~~---------------~ViGLSKl~Riv~~~ar 115 (188)
T PRK09347 90 AHVAYIPKG---------------KVIGLSKIARIVDFFAR 115 (188)
T ss_pred EEEEEeCCC---------------ccccHHHHHHHHHHHHc
Confidence 599999974 46899999999999654
No 103
>PRK05481 lipoyl synthase; Provisional
Probab=31.22 E-value=1.7e+02 Score=27.43 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=27.0
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeec
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSt 149 (275)
||-+..+.+.+.+....++|+..+.+|.||.
T Consensus 205 GfGET~ed~~~tl~~lrel~~d~v~if~Ys~ 235 (289)
T PRK05481 205 GLGETDEEVLEVMDDLRAAGVDILTIGQYLQ 235 (289)
T ss_pred ECCCCHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 7766788889999999999999999999987
No 104
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=31.12 E-value=1.4e+02 Score=29.65 Aligned_cols=50 Identities=16% Similarity=0.180 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCC-----------CC-HHHHHHHHHHHHHhHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF-----------RP-EVEVEFLMSLLESGVK 171 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~k-----------Rp-~~EV~~Lm~l~~~~l~ 171 (275)
+..+.+.+.++++.++|+.++++|.++...+. .| .+|...++..+.+.+.
T Consensus 215 qt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~ 276 (455)
T TIGR00538 215 QTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLT 276 (455)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999643331 22 3455556666555554
No 105
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=30.73 E-value=1.3e+02 Score=29.75 Aligned_cols=50 Identities=12% Similarity=0.075 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCC-----------CC-HHHHHHHHHHHHHhHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF-----------RP-EVEVEFLMSLLESGVK 171 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~k-----------Rp-~~EV~~Lm~l~~~~l~ 171 (275)
+..+.+.+.++++.++|++.+++|.++..-|. -| .+|...+++.+.+.|.
T Consensus 216 qt~e~~~~tl~~~~~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~ 277 (453)
T PRK13347 216 QTVESFRETLDKVIALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLL 277 (453)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999998643331 12 2455556666666664
No 106
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=30.30 E-value=2e+02 Score=25.75 Aligned_cols=60 Identities=7% Similarity=0.073 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEe
Q 044091 124 VKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVI 187 (275)
Q Consensus 124 ~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~i 187 (275)
.+.+.++++.|..+|++.|.++.-.. ......+| ..+.+.+.+.+..+...+.|+++-+-
T Consensus 84 ~~~~~~~i~~a~~lga~~i~~~~g~~-~~~~~~~~---~~~~~~~~l~~l~~~a~~~Gv~l~lE 143 (258)
T PRK09997 84 RDGVAAAIRYARALGNKKINCLVGKT-PAGFSSEQ---IHATLVENLRYAANMLMKEDILLLIE 143 (258)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCC-CCCCCHHH---HHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 46689999999999999998753211 01111222 23344455555556677889988774
No 107
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=30.16 E-value=2.7e+02 Score=26.57 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=33.4
Q ss_pred CcchhhhHHHHHHHHHHHHHcCCCeEEEEeee-------cCCCCCCHHHHHHH
Q 044091 117 GSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS-------SDNWFRPEVEVEFL 162 (275)
Q Consensus 117 ~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFS-------teN~kRp~~EV~~L 162 (275)
..-+.+-+..+..-++++.++|++.|+||.-| ...|+....++..+
T Consensus 43 ~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~i~~~~~~~~~~l~~~ 95 (372)
T PRK07238 43 ATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQMSGRWKVKHPDMKPL 95 (372)
T ss_pred CCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhCCCCccCChHHHHH
Confidence 33456678889999999999999999999877 34565444444333
No 108
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=30.04 E-value=4.4e+02 Score=24.25 Aligned_cols=96 Identities=9% Similarity=0.002 Sum_probs=53.8
Q ss_pred HHHHHHcCCCeEEEEee-----ecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec-CCCCCC-HHHHHHHHH
Q 044091 131 VELCCKWGIRVLTVFAF-----SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG-DTSKLP-KCLEELVIN 203 (275)
Q Consensus 131 v~wc~~~GI~~lTvYaF-----SteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG-d~~~LP-~~l~~~i~~ 203 (275)
++++.+.|++.+.+|.= ...|++++.+|.-....-+. ....+.|++|++.. |...-| +.+.+.++.
T Consensus 77 i~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i-------~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 77 ARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVI-------EFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHH-------HHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 55667789999988752 23688888887433222111 22445677777754 444455 444555555
Q ss_pred HHHHhcCCCceEEEEE--ecCCCHHHHHHHHHHHHH
Q 044091 204 VVETTKNNTRFQLIVA--VSYSGQYDLVQACQRIAM 237 (275)
Q Consensus 204 ~e~~T~~~~~~~lnia--i~YgGR~EIv~A~r~l~~ 237 (275)
+.+... . .++++ +++..-+++.+.++.+.+
T Consensus 150 ~~~~g~--~--~i~l~Dt~G~~~P~~v~~~~~~~~~ 181 (262)
T cd07948 150 VDKLGV--N--RVGIADTVGIATPRQVYELVRTLRG 181 (262)
T ss_pred HHHcCC--C--EEEECCcCCCCCHHHHHHHHHHHHH
Confidence 554322 2 34444 455556666666665543
No 109
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=29.83 E-value=2.7e+02 Score=21.94 Aligned_cols=56 Identities=14% Similarity=0.083 Sum_probs=33.8
Q ss_pred CCCCEEEEEecCCchHHHHcCCCCC--cchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCC
Q 044091 93 SMPRHVAVIMDGNRRWAHLRGLPVG--SGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFR 154 (275)
Q Consensus 93 ~iPrHIAiImDGNRRwAk~~gl~~~--~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kR 154 (275)
..+-++.++.+|... .+.. .....+.-.-.|..+.|..+|++.+.++.|.-.....
T Consensus 25 g~~v~vv~~t~G~~~------~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~ 82 (128)
T PF02585_consen 25 GHRVVVVTLTDGEAG------HPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQLPG 82 (128)
T ss_dssp T-EEEEEECE--TTT------SSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSCTC
T ss_pred CCeEEEEEecccccC------CcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCccc
Confidence 456688888888531 1000 0003444577899999999999999999987555444
No 110
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=29.04 E-value=5.5e+02 Score=26.81 Aligned_cols=100 Identities=21% Similarity=0.348 Sum_probs=61.6
Q ss_pred CCCcchhhhHHHHHHHHHHHHHcCCCeEEEE-eeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEe------
Q 044091 115 PVGSGYEAGVKSLKTLVELCCKWGIRVLTVF-AFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVI------ 187 (275)
Q Consensus 115 ~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvY-aFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~i------ 187 (275)
+..+--..|+..|...++-+..+||+.+-.- -|.++ +.+|++.+.+.+ .+.|+.+-+.
T Consensus 349 en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~D----Te~Ei~~I~~~c-----------~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 349 ENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTD----TDAEIAALKELC-----------EELGVEVALSEVWAKG 413 (557)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC----CHHHHHHHHHHH-----------HHcCCCEEEecccccC
Confidence 3445678899999999999999999976543 35443 345777765543 2346544211
Q ss_pred --cCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHh
Q 044091 188 --GDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVK 240 (275)
Q Consensus 188 --Gd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~ 240 (275)
|..+ +.+++-++.+ .... ++-+-|...+.|.+.++++++++-
T Consensus 414 g~Gai~-----LA~aVveA~~--~~~s----~f~~lY~~d~sl~eKIe~IAkkIY 457 (557)
T PRK13505 414 GEGGVE-----LAEKVVELIE--EGES----NFKPLYDDEDSLEEKIEKIATKIY 457 (557)
T ss_pred CcchHH-----HHHHHHHHHh--cCCC----CCceecCCCCcHHHHHHHHHHHcc
Confidence 3332 2222222222 1112 234559999999999999998753
No 111
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=28.69 E-value=4.6e+02 Score=24.38 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=57.0
Q ss_pred HHHHHHHcCCCeEEEEe-----eecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEec-CCC---CC-CHHHHH
Q 044091 130 LVELCCKWGIRVLTVFA-----FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG-DTS---KL-PKCLEE 199 (275)
Q Consensus 130 iv~wc~~~GI~~lTvYa-----FSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iG-d~~---~L-P~~l~~ 199 (275)
=++++.+.|++.|.++. +...|+++..+|+-..+.-+.+ ...+.|..+++.- |.. .. |+.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~-------~a~~~G~~v~~~~~d~~~~~r~~~~~~~~ 151 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIE-------YAIKNGIEVNIYLEDWSNGMRDSPDYVFQ 151 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHH-------HHHhCCCEEEEEEEeCCCCCcCCHHHHHH
Confidence 36678888999999998 6678888888875443333222 2345566666644 322 22 444455
Q ss_pred HHHHHHHHhcCCCceEEEEE--ecCCCHHHHHHHHHHHHH
Q 044091 200 LVINVVETTKNNTRFQLIVA--VSYSGQYDLVQACQRIAM 237 (275)
Q Consensus 200 ~i~~~e~~T~~~~~~~lnia--i~YgGR~EIv~A~r~l~~ 237 (275)
.++.+.+.- -+ .|+|| +++.-=+++.+.++.+.+
T Consensus 152 ~~~~~~~~G--~~--~i~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 152 LVDFLSDLP--IK--RIMLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred HHHHHHHcC--CC--EEEecCCCCCCCHHHHHHHHHHHHh
Confidence 555555432 22 34444 555666666666666543
No 112
>PRK12928 lipoyl synthase; Provisional
Probab=28.65 E-value=79 Score=29.74 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=20.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeec
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSt 149 (275)
||-+..+.+.+.+++..++|+..++++.|+.
T Consensus 213 G~GET~ed~~etl~~Lrel~~d~v~i~~Yl~ 243 (290)
T PRK12928 213 GLGETEDEVIETLRDLRAVGCDRLTIGQYLR 243 (290)
T ss_pred eCCCCHHHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 5555566666777777777777777766654
No 113
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=28.24 E-value=4.6e+02 Score=24.94 Aligned_cols=66 Identities=9% Similarity=0.053 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
...+.+.++++.+.+.|+..|++.- .|-+-|+. + +++++ .+.+.|+.+.+.-+-..|.++..+.+
T Consensus 46 ~~~e~~~~ii~~~~~~g~~~v~~~G--GEPll~~~--~---~~il~--------~~~~~g~~~~i~TNG~ll~~~~~~~L 110 (378)
T PRK05301 46 LSTEEWIRVLREARALGALQLHFSG--GEPLLRKD--L---EELVA--------HARELGLYTNLITSGVGLTEARLAAL 110 (378)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEC--CccCCchh--H---HHHHH--------HHHHcCCcEEEECCCccCCHHHHHHH
Confidence 4567788899999999998777653 77776653 2 23222 23445777888888778887766554
Q ss_pred H
Q 044091 202 I 202 (275)
Q Consensus 202 ~ 202 (275)
.
T Consensus 111 ~ 111 (378)
T PRK05301 111 K 111 (378)
T ss_pred H
Confidence 4
No 114
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.11 E-value=96 Score=28.48 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=19.4
Q ss_pred EecCCCHHHHHHHHHHHHHHHhcC
Q 044091 219 AVSYSGQYDLVQACQRIAMKVKDG 242 (275)
Q Consensus 219 ai~YgGR~EIv~A~r~l~~~v~~g 242 (275)
|=+||||.||-+|.++.+-....|
T Consensus 55 apAf~GrKEIWDaL~aa~ta~e~~ 78 (231)
T KOG0013|consen 55 APAFGGRKEIWDALHAAVTAAEEG 78 (231)
T ss_pred ccccCCcHHHHHHHHHHHHHHhcc
Confidence 678999999999998876655544
No 115
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=28.01 E-value=90 Score=26.53 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=29.2
Q ss_pred cchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCC
Q 044091 118 SGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155 (275)
Q Consensus 118 ~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp 155 (275)
-||..|.+....+.+||..+.=+.-+|.-+.--|.+..
T Consensus 94 ~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~~~N~~~~ 131 (140)
T PF06962_consen 94 PGHPGGKEESEAVEEFLASLDQKEFNVLKYQFINQKNN 131 (140)
T ss_dssp -STCHHHHHHHHHHHHHHTS-TTTEEEEEEEESS-SS-
T ss_pred CCCCCCHHHHHHHHHHHHhCCcceEEEEEEEccCCCCC
Confidence 49999999999999999999888777777776776543
No 116
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=27.87 E-value=4.4e+02 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=17.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeeecCCCC
Q 044091 127 LKTLVELCCKWGIRVLTVFAFSSDNWF 153 (275)
Q Consensus 127 l~eiv~wc~~~GI~~lTvYaFSteN~k 153 (275)
+.+.++++.++|++.+=+|......|.
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~ 38 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWK 38 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCC
Confidence 445666777777777777776665553
No 117
>PF01227 GTP_cyclohydroI: GTP cyclohydrolase I; InterPro: IPR020602 GTP cyclohydrolase I (3.5.4.16 from EC) catalyses the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. The comparison of the sequence of the enzyme from bacterial and eukaryotic sources shows that the structure of this enzyme has been extremely well conserved throughout evolution []. NADPH-dependent nitrile oxidoreductases are involved in the biosynthesis of queuosine, a 7-deazaguanine-modified nucleoside found in tRNA(GUN) of bacteria and eukaryotes []. This entry represents a common fold found in GTP cyclohydrolase I and NADPH-dependent nitrile oxidoreducases [].; PDB: 1A8R_E 1GTP_L 1N3R_O 1N3T_O 1FBX_I 1N3S_B 1A9C_I 1IS8_E 1IS7_G 1WPL_F ....
Probab=27.70 E-value=58 Score=28.83 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=20.0
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCK 136 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~ 136 (275)
-|||.|+|| .-.|+.++.++++|+..
T Consensus 82 ~~VaYiP~~---------------~viGLSKl~RiV~~~ar 107 (179)
T PF01227_consen 82 AHVAYIPGG---------------RVIGLSKLARIVDFFAR 107 (179)
T ss_dssp EEEEEE-SS---------------EEE-HHHHHHHHHHHHS
T ss_pred EEEEEEeCC---------------cccChhHHHHHHHHHhc
Confidence 599999974 46899999999999654
No 118
>PRK12677 xylose isomerase; Provisional
Probab=27.70 E-value=5.9e+02 Score=24.91 Aligned_cols=55 Identities=7% Similarity=0.052 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEe
Q 044091 126 SLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVI 187 (275)
Q Consensus 126 ~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~i 187 (275)
.+.+.++.+.++|.+.|++..--...|..+..|-+...+.+. ..+.+.|++|..+
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk-------~~l~~~GL~v~~v 86 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFK-------KALDETGLVVPMV 86 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHH-------HHHHHcCCeeEEE
Confidence 478899999999999999964222334444433222222222 2345677777654
No 119
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=27.55 E-value=1.4e+02 Score=23.68 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=25.3
Q ss_pred chhhhHHHHHHHHHHH-HHcCCCeEEEEeeec
Q 044091 119 GYEAGVKSLKTLVELC-CKWGIRVLTVFAFSS 149 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc-~~~GI~~lTvYaFSt 149 (275)
|.-.|-.-+..++.|| .+.|++.+++..++.
T Consensus 90 ~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~ 121 (155)
T PF13420_consen 90 GKGIGRKLLDELIEYAFKELGIHKIYLEVFSS 121 (155)
T ss_dssp TSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT
T ss_pred CCcHHHHHHHHHHHHhhhccCeEEEEEEEecC
Confidence 3446678899999999 999999999999875
No 120
>PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes []. It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B.
Probab=27.55 E-value=53 Score=27.68 Aligned_cols=44 Identities=27% Similarity=0.347 Sum_probs=29.3
Q ss_pred EEecC-CchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeec
Q 044091 100 VIMDG-NRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 100 iImDG-NRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSt 149 (275)
||+|| |=-| .++. ++...++.+..+++++.+.|.+.+.|+.-+.
T Consensus 5 VVIDG~NVA~--~~~~----~~~f~~~~i~~~v~~~~~rG~~~v~v~~~~~ 49 (155)
T PF11977_consen 5 VVIDGSNVAY--SHGN----QKFFSVRGIQIAVEYFKSRGHEVVVVFPPNY 49 (155)
T ss_dssp EEEEHHHHHH--HHTT----TTSEEHHHHHHHHHHHHHTT---EEEEEEGG
T ss_pred EEEeCHHHHh--hcCC----CCCcCHHHHHHHHHHHHHcCCCeEEEEcchh
Confidence 68898 4434 2221 1125688999999999999999999998655
No 121
>PRK04143 hypothetical protein; Provisional
Probab=27.28 E-value=2.1e+02 Score=26.73 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHH-HHHHHhHH
Q 044091 125 KSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLM-SLLESGVK 171 (275)
Q Consensus 125 ~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm-~l~~~~l~ 171 (275)
......++.|.+.|++.|.|=+.||..+.=|+++...+| +.+.+|++
T Consensus 187 ~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~ 234 (264)
T PRK04143 187 SCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLK 234 (264)
T ss_pred HHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 445667777888999999999999999999999988776 44555554
No 122
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=27.03 E-value=1.2e+02 Score=30.45 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=27.1
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeec
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSt 149 (275)
-+.+|+++..++++.|..+|++.|||-.=..
T Consensus 202 ~~peGyRKAlR~mklAekf~lPIVtLVDTpG 232 (431)
T PLN03230 202 PQPNGYRKALRFMRHAEKFGFPILTFVDTPG 232 (431)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 3578899999999999999999999977554
No 123
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=26.98 E-value=1.6e+02 Score=23.20 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=32.2
Q ss_pred hhhcccCchhHHHHhccCCCCCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEE
Q 044091 74 REVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144 (275)
Q Consensus 74 ~~~~~~~~~~~l~~~l~~~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTv 144 (275)
+.+........+.......+-+..|-+..|++ .-++.+.+++..|.+.|+..+++
T Consensus 71 ~~v~~~~L~~~l~~~~~~~~~~~~v~i~aD~~----------------~~y~~vv~vl~~l~~~g~~~v~l 125 (130)
T PF02472_consen 71 KPVDLEELEARLKELKQKNPDPVRVLIRADKD----------------APYQDVVDVLDALREAGFTKVSL 125 (130)
T ss_dssp EEE-CCCHHHHHHHHCCC-TTS--EEEEE-TT----------------S-HHHHHHHHHHHHHTT---EE-
T ss_pred CcCchHHHHHHHHHhhccCCCcceEEEEeCCC----------------CCHHHHHHHHHHHHHcCCCEEEE
Confidence 34555555555555544444334799999975 45789999999999999998876
No 124
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=26.98 E-value=78 Score=28.76 Aligned_cols=46 Identities=17% Similarity=0.238 Sum_probs=31.6
Q ss_pred EecCCCCCCHHHHHHHHHHHH-----HhcCCCc-------------eEEEEEecCCCHHHHHHH
Q 044091 186 VIGDTSKLPKCLEELVINVVE-----TTKNNTR-------------FQLIVAVSYSGQYDLVQA 231 (275)
Q Consensus 186 ~iGd~~~LP~~l~~~i~~~e~-----~T~~~~~-------------~~lniai~YgGR~EIv~A 231 (275)
++||.|++++++.+.+++.-. .+++.++ -.|.++-+.|||-|=.=+
T Consensus 47 ~vGDfDSv~~e~~~~~~~~~~~~~f~~eKd~TD~elAl~~a~e~g~d~i~i~Ga~GGR~DH~l~ 110 (212)
T COG1564 47 AVGDFDSVSEELLAYYKEKTVTIKFPAEKDSTDLELALDEALERGADEIVILGALGGRLDHALA 110 (212)
T ss_pred EEecccccCHHHHHHHhhcCcceecChhhccchHHHHHHHHHHcCCCEEEEEecCCChHHHHHH
Confidence 578888888888777666443 2333333 278899999999885544
No 125
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=26.96 E-value=2.4e+02 Score=22.73 Aligned_cols=46 Identities=17% Similarity=0.342 Sum_probs=26.7
Q ss_pred CCCEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHH-HHHcCC-CeEEEEeeecC
Q 044091 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVEL-CCKWGI-RVLTVFAFSSD 150 (275)
Q Consensus 94 iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~w-c~~~GI-~~lTvYaFSte 150 (275)
+|+.|.|++|.-+ .+ .|.. +..+.+.+.- ...++- ..++++.|+.+
T Consensus 1 ~~~~v~~vlD~S~------SM---~~~~--~~~~~~al~~~l~~l~~~~~~~l~~Fs~~ 48 (171)
T cd01461 1 LPKEVVFVIDTSG------SM---SGTK--IEQTKEALLTALKDLPPGDYFNIIGFSDT 48 (171)
T ss_pred CCceEEEEEECCC------CC---CChh--HHHHHHHHHHHHHhCCCCCEEEEEEeCCC
Confidence 5899999999642 12 1221 3333333322 333543 47999999875
No 126
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=26.94 E-value=3.3e+02 Score=21.75 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCCeEEEEe---eecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH
Q 044091 125 KSLKTLVELCCKWGIRVLTVFA---FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201 (275)
Q Consensus 125 ~~l~eiv~wc~~~GI~~lTvYa---FSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i 201 (275)
.....+-+||.+.|+..+-+|. .|..+..||. ...|++ .+.+..+.+-++-+.++|..+....+
T Consensus 19 ~Q~~~~~~~a~~~g~~i~~~~~d~~~Sg~~~~Rp~--l~~ll~-----------~~~~g~~~~ivv~~~~Rl~R~~~~~~ 85 (148)
T smart00857 19 RQLEALRAYAKANGWEVVRIYEDEGVSGKKADRPG--LQRLLA-----------DLRAGDIDVLVVYKLDRLGRSLRDLL 85 (148)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCcCCCCCCHH--HHHHHH-----------HHHcCCCCEEEEeccchhhCcHHHHH
Confidence 3456677899999998888775 4666655543 222222 23445667888889988888777666
Q ss_pred HHHHHHhcCC
Q 044091 202 INVVETTKNN 211 (275)
Q Consensus 202 ~~~e~~T~~~ 211 (275)
.-++.....+
T Consensus 86 ~~~~~l~~~g 95 (148)
T smart00857 86 ALLELLEKKG 95 (148)
T ss_pred HHHHHHHHCC
Confidence 6555554433
No 127
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=26.92 E-value=3.6e+02 Score=25.04 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=24.6
Q ss_pred ecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHH
Q 044091 187 IGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQAC 232 (275)
Q Consensus 187 iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~ 232 (275)
-|..+.+++++.+.++.+.+. ++.-+-+.++=...+++.++.
T Consensus 180 TG~~~~~~~~~~~~i~~ir~~----t~~Pi~vGFGI~~~e~~~~~~ 221 (263)
T CHL00200 180 TGLKTELDKKLKKLIETIKKM----TNKPIILGFGISTSEQIKQIK 221 (263)
T ss_pred CCCCccccHHHHHHHHHHHHh----cCCCEEEECCcCCHHHHHHHH
Confidence 355556777777776666653 344445555555666665543
No 128
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=26.86 E-value=1.6e+02 Score=24.71 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHH
Q 044091 124 VKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLM 163 (275)
Q Consensus 124 ~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm 163 (275)
.+..+..++.+.+.+++.|.+=++||..+.=|+++...++
T Consensus 103 ~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~ 142 (147)
T cd02906 103 AKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIA 142 (147)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHH
Confidence 3556677788889999999999999999999999987764
No 129
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=26.31 E-value=3.9e+02 Score=26.33 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCH-HHHHHHHHHHHHhHHHHHHHhhcCCcEEEE
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPE-VEVEFLMSLLESGVKEEKESFIRERIRISV 186 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~-~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~ 186 (275)
..++.+++.++.|.++|-+.|++|. .+=++-|. .......+.+.+.|.+... ....++++-+
T Consensus 113 ~AIe~~k~~idiA~eLGa~~I~iW~--~DG~~~~g~~~~~~a~~rl~esL~eI~~-~~~~~v~~~i 175 (378)
T TIGR02635 113 KAIDHLLECVDIAKKTGSKDISLWL--ADGTNYPGQDDFRSRKDRLEESLAEVYE-HLGADMRLLI 175 (378)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEec--CCcCcCCcccCHHHHHHHHHHHHHHHHH-hCcCCCEEEE
Confidence 4567889999999999999999984 23333333 1122222344444443332 2224666655
No 130
>PRK14976 5'-3' exonuclease; Provisional
Probab=26.14 E-value=1.8e+02 Score=27.16 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=40.8
Q ss_pred hHHHHhccCCCCCCEEEEEecCCch-HHHHcCCCCCcchhhhH-----HHHHHHHHHHHHcCCCeEEEEeeecCCCCCCH
Q 044091 83 PALAEELQRESMPRHVAVIMDGNRR-WAHLRGLPVGSGYEAGV-----KSLKTLVELCCKWGIRVLTVFAFSSDNWFRPE 156 (275)
Q Consensus 83 ~~l~~~l~~~~iPrHIAiImDGNRR-wAk~~gl~~~~Gh~~G~-----~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~ 156 (275)
+.+.+.++. .-|.|++++.|+.+. | |..=.+...+++... ..+..+-+++..+||+.+..- -
T Consensus 44 ~~l~~ll~~-~~p~~~~v~fD~~~~~~-R~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~~----------g 111 (281)
T PRK14976 44 TMIFKILKK-LNPSYILIAFDAGRKTF-RHQLYDEYKQGRKKTPESLISQIPLLKKILKLAGIKWEEQP----------G 111 (281)
T ss_pred HHHHHHHHh-cCCCEEEEEEECCCCcc-cccccHHHhcCCCCCCHHHHHHHHHHHHHHHHCCCCEEecC----------C
Confidence 344444443 348999999998432 3 222233333443332 223334445666899888652 2
Q ss_pred HHHHHHHHHHHHhH
Q 044091 157 VEVEFLMSLLESGV 170 (275)
Q Consensus 157 ~EV~~Lm~l~~~~l 170 (275)
-|-++++.-+...+
T Consensus 112 ~EADDviatla~~~ 125 (281)
T PRK14976 112 YEADDLIGSLAKKL 125 (281)
T ss_pred cCHHHHHHHHHHHH
Confidence 46666666554443
No 131
>PRK06267 hypothetical protein; Provisional
Probab=26.01 E-value=2.4e+02 Score=27.02 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=29.7
Q ss_pred HHHHcCCCC----CcchhhhHHHHHHHHHHHHHcCCCeEEEEeeec
Q 044091 108 WAHLRGLPV----GSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 108 wAk~~gl~~----~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSt 149 (275)
+|++.|+.. .-|+....+.+.+++.|..++++..++++.|..
T Consensus 161 ~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P 206 (350)
T PRK06267 161 KAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNP 206 (350)
T ss_pred HHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeE
Confidence 455666653 225555677888888888888888888877763
No 132
>COG0302 FolE GTP cyclohydrolase I [Coenzyme metabolism]
Probab=25.99 E-value=61 Score=29.18 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=36.1
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKE 175 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~ 175 (275)
-|||.|+|| --.|+.++..+++|.. +||.- .+.|-.-+.+.+. +
T Consensus 96 ahVAYiP~g---------------kV~GlSKiaRiV~~~a-----------------rR~Qv-QErlT~qIA~al~---~ 139 (195)
T COG0302 96 AHVAYIPDG---------------KVIGLSKIARIVDIFA-----------------RRLQV-QERLTEQIADALQ---E 139 (195)
T ss_pred EEEEEcCCC---------------ceecHHHHHHHHHHHh-----------------hhhHH-HHHHHHHHHHHHH---H
Confidence 699999974 3688999999999833 23431 2233333333333 3
Q ss_pred HhhcCCcEEEEecC
Q 044091 176 SFIRERIRISVIGD 189 (275)
Q Consensus 176 ~~~~~~irvr~iGd 189 (275)
.+...||-|-+-+.
T Consensus 140 ~L~p~GVaVvieA~ 153 (195)
T COG0302 140 ILKPRGVAVVIEAE 153 (195)
T ss_pred hcCcCceEEEEEEE
Confidence 45667888877554
No 133
>PTZ00484 GTP cyclohydrolase I; Provisional
Probab=25.97 E-value=57 Score=30.59 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=21.5
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCK 136 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~ 136 (275)
-|||.|+|| .-.|+.++..+++|+..
T Consensus 161 ~hIaYiP~~---------------~ViGLSKl~RiV~~~ar 186 (259)
T PTZ00484 161 CTIGYIPNK---------------KVLGLSKFARIIEIFSR 186 (259)
T ss_pred EEEEEecCC---------------eEecHHHHHHHHHHHhc
Confidence 589999974 46899999999999653
No 134
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=25.92 E-value=72 Score=26.54 Aligned_cols=28 Identities=43% Similarity=0.564 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeecCC
Q 044091 124 VKSLKTLVELCCKWGIRVLTVFAFSSDN 151 (275)
Q Consensus 124 ~~~l~eiv~wc~~~GI~~lTvYaFSteN 151 (275)
-+-+.++++.|.+.||+.+--|.|+.++
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~~d~ 70 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFSWDE 70 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeeecCh
Confidence 3778999999999999999999998643
No 135
>COG4887 Uncharacterized metal-binding protein conserved in archaea [General function prediction only]
Probab=25.43 E-value=1.2e+02 Score=26.60 Aligned_cols=44 Identities=25% Similarity=0.382 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHH
Q 044091 123 GVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVK 171 (275)
Q Consensus 123 G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~ 171 (275)
-.-++.+|+++|..++-+.+.+ ||-.+- .+|-..|.+++.+.|.
T Consensus 50 k~TrlEEIae~ckrm~ykkiGi-AFCigl----e~EAr~l~~iLsr~fE 93 (191)
T COG4887 50 KWTRLEEIAELCKRMVYKKIGI-AFCIGL----EEEARALCEILSRGFE 93 (191)
T ss_pred HHHhHHHHHHHHHHhhhhhcce-eeeecc----HHHHHHHHHHHHhcce
Confidence 3467999999999999999998 887753 5677778888777664
No 136
>PRK12606 GTP cyclohydrolase I; Reviewed
Probab=25.27 E-value=67 Score=28.97 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=20.9
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCC 135 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~ 135 (275)
-|||.|++| .-.|+.++..+++|+.
T Consensus 102 ~hVaYiP~~---------------~VvGLSKl~RiV~~~a 126 (201)
T PRK12606 102 AHVAYLPGG---------------KVLGLSKIARIVDMFA 126 (201)
T ss_pred EEEEEeCCC---------------ccccHHHHHHHHHHHh
Confidence 599999973 4689999999999854
No 137
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=25.15 E-value=2.8e+02 Score=26.51 Aligned_cols=29 Identities=7% Similarity=0.162 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSD 150 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSte 150 (275)
+..+.+.+.++++.++|+.++++|.+..+
T Consensus 164 qt~~~~~~~l~~~~~l~~~~i~~y~l~~~ 192 (377)
T PRK08599 164 QTIEDFKESLAKALALDIPHYSAYSLILE 192 (377)
T ss_pred CCHHHHHHHHHHHHccCCCEEeeeceeec
Confidence 45788999999999999999999987653
No 138
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=24.97 E-value=4.6e+02 Score=24.09 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHH
Q 044091 120 YEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEE 199 (275)
Q Consensus 120 h~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~ 199 (275)
..-..+...++.++|.+.||..++- .|+. +-|+.|-++=..++ +| ..||+.. -.+.+
T Consensus 51 ~el~~e~~~~L~~~~~~~gi~f~st-pfd~-------~s~d~l~~~~~~~~------------KI-aS~dl~n--~~lL~ 107 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKELGIDFFST-PFDE-------ESVDFLEELGVPAY------------KI-ASGDLTN--LPLLE 107 (241)
T ss_dssp HSS-HHHHHHHHHHHHHTT-EEEEE-E-SH-------HHHHHHHHHT-SEE------------EE--GGGTT---HHHHH
T ss_pred hcCCHHHHHHHHHHHHHcCCEEEEC-CCCH-------HHHHHHHHcCCCEE------------Ee-ccccccC--HHHHH
Confidence 3456788999999999999987654 4432 34555533211111 11 1234332 22333
Q ss_pred HHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Q 044091 200 LVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRI 235 (275)
Q Consensus 200 ~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l 235 (275)
.+. .++.-|.+..+=+.-+||-+|++.+
T Consensus 108 ~~A--------~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 108 YIA--------KTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp HHH--------TT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred HHH--------HhCCcEEEECCCCCHHHHHHHHHHH
Confidence 322 2556677788888888888888777
No 139
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.91 E-value=6.4e+02 Score=24.42 Aligned_cols=78 Identities=13% Similarity=0.190 Sum_probs=38.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhh
Q 044091 180 ERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELE 259 (275)
Q Consensus 180 ~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L~ 259 (275)
.|.++-+.|+.+.. -.+.+. ++ --++.+-.+..+.+..+=.+..++. ...+..-..+-|...+.+.+.
T Consensus 286 ~gkrv~i~~~~~~~-~~la~~---l~-----elGm~v~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~e~~~~i~ 353 (410)
T cd01968 286 EGKKAALYTGGVKS-WSLVSA---LQ-----DLGMEVVATGTQKGTKEDYERIKEL---LGEGTVIVDDANPRELKKLLK 353 (410)
T ss_pred CCCEEEEEcCCchH-HHHHHH---HH-----HCCCEEEEEecccCCHHHHHHHHHH---hCCCcEEEeCCCHHHHHHHHh
Confidence 48888888886542 222221 22 2345555554444433222222222 222223334567777777765
Q ss_pred cCCCCCCCCcEEEec
Q 044091 260 TNCTEFPYPDLLIRT 274 (275)
Q Consensus 260 t~~~~~PdPDLLIRT 274 (275)
. .+|||+|=+
T Consensus 354 ~-----~~pDl~ig~ 363 (410)
T cd01968 354 E-----KKADLLVAG 363 (410)
T ss_pred h-----cCCCEEEEC
Confidence 4 269999843
No 140
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=24.79 E-value=2e+02 Score=23.17 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHH
Q 044091 125 KSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSL 165 (275)
Q Consensus 125 ~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l 165 (275)
+.+.++++.|.+.+++.|.+=++++.+..=|.+++..+|..
T Consensus 90 ~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~ 130 (133)
T cd03330 90 KATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVE 130 (133)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHH
Confidence 44556777777899999999999999999999999988763
No 141
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=24.54 E-value=98 Score=25.63 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=26.8
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeec
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSt 149 (275)
...|||..|||-|...-++ -.+ ..+.++||+.|.-|.+|.
T Consensus 73 ~l~GVigSGNrNfg~~f~~--------aa~------~ia~ky~VPll~kfEl~G 112 (122)
T PF07972_consen 73 LLRGVIGSGNRNFGDNFCL--------AAD------KIAEKYGVPLLYKFELSG 112 (122)
T ss_dssp GEEEEEEEE-GGGGGGTTH--------HHH------HHHHHHT--EEEEEETT-
T ss_pred hheeEEecCCcHHHHHHHH--------HHH------HHHHHcCCCEEEEEecCC
Confidence 5699999999999866542 111 235678999999999987
No 142
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.53 E-value=5.6e+02 Score=23.60 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHcCCCeEEE
Q 044091 123 GVKSLKTLVELCCKWGIRVLTV 144 (275)
Q Consensus 123 G~~~l~eiv~wc~~~GI~~lTv 144 (275)
|-+-+..+-+.|.++||..+|=
T Consensus 74 g~~gl~~l~~~~~~~Gl~~~t~ 95 (260)
T TIGR01361 74 GEEGLKLLRRAADEHGLPVVTE 95 (260)
T ss_pred HHHHHHHHHHHHHHhCCCEEEe
Confidence 3445555666799999999884
No 143
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=24.46 E-value=57 Score=27.08 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=23.6
Q ss_pred ecCCCHHHHHHHHHHHHHH-HhcCCCCCCCC
Q 044091 220 VSYSGQYDLVQACQRIAMK-VKDGLIEPNDV 249 (275)
Q Consensus 220 i~YgGR~EIv~A~r~l~~~-v~~g~l~~edI 249 (275)
+.-+.++||..|+++|.++ ++++.++++||
T Consensus 10 v~~nt~e~I~~at~eLl~~ii~~N~l~~edi 40 (117)
T TIGR01796 10 VERNEAEEIGEAVAELLTELMERNELTPEDL 40 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 5668899999999999865 45677777664
No 144
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=24.42 E-value=1e+02 Score=24.66 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=26.6
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCC
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN 151 (275)
|.--|-+-+..+++||.+.|++.|.+... .+|
T Consensus 99 g~GiG~~ll~~~~~~a~~~g~~~i~l~~~-~~N 130 (150)
T PLN02706 99 GKGLGKKIIEALTEHARSAGCYKVILDCS-EEN 130 (150)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEec-ccc
Confidence 44467788999999999999999999876 356
No 145
>PRK07094 biotin synthase; Provisional
Probab=24.34 E-value=1.9e+02 Score=26.92 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred hHHHHcCCCCCcchhhhH-----HHHHHHHHHHHHcCCCeEEEEeeec-------CCCCCCHHHHHHHHHHHHHhH
Q 044091 107 RWAHLRGLPVGSGYEAGV-----KSLKTLVELCCKWGIRVLTVFAFSS-------DNWFRPEVEVEFLMSLLESGV 170 (275)
Q Consensus 107 RwAk~~gl~~~~Gh~~G~-----~~l~eiv~wc~~~GI~~lTvYaFSt-------eN~kRp~~EV~~Lm~l~~~~l 170 (275)
+|+++.|+...-+-..|+ +.+.+.++++.++++..++++.|.. ....-+.+|.-.++.++...+
T Consensus 172 ~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~l 247 (323)
T PRK07094 172 KDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLL 247 (323)
T ss_pred HHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhC
No 146
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=24.18 E-value=6.7e+02 Score=24.39 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHH
Q 044091 129 TLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMS 164 (275)
Q Consensus 129 eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~ 164 (275)
+-++++.+.||..+++ |+ .+|++.|.+
T Consensus 93 ~~l~~a~~~Gv~~i~v-----DS----~~El~~i~~ 119 (394)
T cd06831 93 SQIKYAAKVGVNIMTC-----DN----EIELKKIAR 119 (394)
T ss_pred HHHHHHHHCCCCEEEE-----CC----HHHHHHHHH
Confidence 4556677788877654 32 466666554
No 147
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=24.16 E-value=58 Score=27.03 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=23.6
Q ss_pred ecCCCHHHHHHHHHHHHHH-HhcCCCCCCCC
Q 044091 220 VSYSGQYDLVQACQRIAMK-VKDGLIEPNDV 249 (275)
Q Consensus 220 i~YgGR~EIv~A~r~l~~~-v~~g~l~~edI 249 (275)
+.-+.+++|.+|+++|.++ ++++.++++||
T Consensus 10 v~~nt~e~I~~at~eLl~~i~~~N~l~~edi 40 (117)
T cd02185 10 VEENTAEEILEATRELLEEIIERNNIKPEDI 40 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 5678899999999999865 45677777664
No 148
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=24.07 E-value=5.5e+02 Score=25.72 Aligned_cols=150 Identities=15% Similarity=0.172 Sum_probs=75.0
Q ss_pred ecCCchHHHHcCCCCC-----cchhhhHHHHHHHHHHHH-HcCCCeEEEEeeecCCCCCCHHHHHHHHH-----HHHHhH
Q 044091 102 MDGNRRWAHLRGLPVG-----SGYEAGVKSLKTLVELCC-KWGIRVLTVFAFSSDNWFRPEVEVEFLMS-----LLESGV 170 (275)
Q Consensus 102 mDGNRRwAk~~gl~~~-----~Gh~~G~~~l~eiv~wc~-~~GI~~lTvYaFSteN~kRp~~EV~~Lm~-----l~~~~l 170 (275)
+-|+..++.-+.++.. .++..+ ..+.++.. .+||+++.+--+-.++-.+--.++..++. -+++.+
T Consensus 240 ~sg~~t~~~i~~~~~A~lniv~~~~~~----~~~A~~Le~~fGiP~~~~~~~Gi~~T~~~Lr~ia~~~g~~i~~~~e~~I 315 (466)
T TIGR01282 240 WSGDGTLNEMENAPKAKLNLIHCYRSM----NYISRHMEEKYGIPWMEYNFFGPTKIAESLRKIAEFFDDEIKEKAEEVI 315 (466)
T ss_pred ECCCCCHHHHHhcccCCEEEEEChHHH----HHHHHHHHHHhCCceEeCCCCCHHHHHHHHHHHHHHHCchhHHHHHHHH
Confidence 3467777777776653 244333 23455554 47999987642222222121222222221 111112
Q ss_pred HH-------HHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEE-ecCCCHHHHHHHHHHHHHHHh
Q 044091 171 KE-------EKESFIR--ERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVA-VSYSGQYDLVQACQRIAMKVK 240 (275)
Q Consensus 171 ~~-------~~~~~~~--~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lnia-i~YgGR~EIv~A~r~l~~~v~ 240 (275)
.+ .++.+++ .|.|+-+.|... -|..+...+ .+ -++.+..+ ..|+..++.....+.+ .
T Consensus 316 ~~e~~~~~~~ld~~~~~L~GKrv~i~~g~~-~~~~~~~~l---~E-----LGmevv~~g~~~~~~~~~~~~~~~~----~ 382 (466)
T TIGR01282 316 AKYQPAVDAVIAKYRPRLEGKTVMLYVGGL-RPRHVIGAF---ED-----LGMEVIGTGYEFAHNDDYERTTKYM----K 382 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEECCCC-cHHHHHHHH---HH-----CCCEEEEEeeecCCHHHHHHHHHhc----C
Confidence 21 1222222 478888887542 244444432 11 34555433 3345667776654433 2
Q ss_pred cCCCCCCCCCHHHHHhhhhcCCCCCCCCcEEEe
Q 044091 241 DGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273 (275)
Q Consensus 241 ~g~l~~edI~e~~i~~~L~t~~~~~PdPDLLIR 273 (275)
++.+-.++.|...+.+.+... +|||+|=
T Consensus 383 ~~~~i~~~~d~~el~~~i~~~-----~pDl~ig 410 (466)
T TIGR01282 383 DGTLIYDDVTHYEFEEFVEKL-----KPDLVGS 410 (466)
T ss_pred CCeEEeeCCCHHHHHHHHHHh-----CCCEEEe
Confidence 333445667777888877653 6999984
No 149
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=23.81 E-value=83 Score=27.77 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCeEEEEeee---cCCCCCCH
Q 044091 129 TLVELCCKWGIRVLTVFAFS---SDNWFRPE 156 (275)
Q Consensus 129 eiv~wc~~~GI~~lTvYaFS---teN~kRp~ 156 (275)
.++.++...||..+++++++ ..|+.|..
T Consensus 35 ~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~ 65 (200)
T TIGR02354 35 NVAINLARAGIGKLILVDFDVVEPSNLNRQQ 65 (200)
T ss_pred HHHHHHHHcCCCEEEEECCCEEccccccccc
Confidence 36777778999999999999 89999853
No 150
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=23.77 E-value=92 Score=19.48 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.5
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEE
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTV 144 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTv 144 (275)
|+.-|..-+..+++|+.+.|+..+.+
T Consensus 39 ~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 39 GKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred CcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 45567788999999999999988865
No 151
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=23.70 E-value=51 Score=26.22 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=18.5
Q ss_pred CCCCCCHHHHHhhhhcCCCCCCCCcEEE
Q 044091 245 EPNDVSESLIEQELETNCTEFPYPDLLI 272 (275)
Q Consensus 245 ~~edI~e~~i~~~L~t~~~~~PdPDLLI 272 (275)
++++++.+.++..+.. -|+||+||
T Consensus 35 ~~~~l~~~~l~~l~~~----~p~pe~li 58 (110)
T PF04430_consen 35 SPHDLTPEDLEELLEL----EPKPEVLI 58 (110)
T ss_dssp STTCEETHHHHHHHCT----CCS-SEEE
T ss_pred CcccCCHHHHHHHHhc----cCCCcEEE
Confidence 5678999999988864 38899987
No 152
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=23.68 E-value=2.4e+02 Score=21.95 Aligned_cols=61 Identities=10% Similarity=0.214 Sum_probs=36.8
Q ss_pred CCEEEEEecC-Cch-HHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCC--eEEEEeeecCCCCCCHHHHHHHHHH
Q 044091 95 PRHVAVIMDG-NRR-WAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIR--VLTVFAFSSDNWFRPEVEVEFLMSL 165 (275)
Q Consensus 95 PrHIAiImDG-NRR-wAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~--~lTvYaFSteN~kRp~~EV~~Lm~l 165 (275)
..+|.+=+++ +-+ .-+..+ .....+.+.+.++++.+.|++ ...++.+..+| .+|+..+.++
T Consensus 101 ~~~i~~~l~s~~~~~~~~~~~------~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~----~~e~~~~~~~ 165 (166)
T PF04055_consen 101 VDRIRISLESLDEESVLRIIN------RGKSFERVLEALERLKEAGIPRVIIFIVGLPGEN----DEEIEETIRF 165 (166)
T ss_dssp CSEEEEEEBSSSHHHHHHHHS------STSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTS----HHHHHHHHHH
T ss_pred ccEEecccccCCHHHhhhhhc------CCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCC----HHHHHHHhCc
Confidence 4567766664 222 222221 234578899999999999998 33344444465 4666665553
No 153
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=23.67 E-value=1.1e+02 Score=28.51 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=27.0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 044091 120 YEAGVKSLKTLVELCCKWGIRVLTVFAFSSD 150 (275)
Q Consensus 120 h~~G~~~l~eiv~wc~~~GI~~lTvYaFSte 150 (275)
+..|+++..++++.|.++|++.||+..=+.-
T Consensus 80 ~~~g~rKa~R~~~lA~~~~lPvV~lvDtpGa 110 (256)
T PRK12319 80 HPEGYRKALRLMKQAEKFGRPVVTFINTAGA 110 (256)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCCc
Confidence 4678999999999999999999999875553
No 154
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=23.64 E-value=5.4e+02 Score=24.47 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHH-cCCCeEEEEeeecCCCCCCHHHHHHHHHHH
Q 044091 124 VKSLKTLVELCCK-WGIRVLTVFAFSSDNWFRPEVEVEFLMSLL 166 (275)
Q Consensus 124 ~~~l~eiv~wc~~-~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~ 166 (275)
.+.+.+++++..+ -||+.|.+.. +|-+-++...+..|++.+
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsG--GDPLl~~d~~L~~ll~~L 185 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISG--GDPLMAKDHELEWLLKRL 185 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEEC--CccccCCHHHHHHHHHHH
Confidence 6778888888875 4898877654 676777765555554443
No 155
>TIGR00593 pola DNA polymerase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.56 E-value=1.9e+02 Score=31.69 Aligned_cols=75 Identities=23% Similarity=0.232 Sum_probs=41.5
Q ss_pred hHHHHhccCCCCCCEEEEEecCCch-HHHHcCCCCCcchhhh-HHHHHHHHHHHH----HcCCCeEEEEeeecCCCCCCH
Q 044091 83 PALAEELQRESMPRHVAVIMDGNRR-WAHLRGLPVGSGYEAG-VKSLKTLVELCC----KWGIRVLTVFAFSSDNWFRPE 156 (275)
Q Consensus 83 ~~l~~~l~~~~iPrHIAiImDGNRR-wAk~~gl~~~~Gh~~G-~~~l~eiv~wc~----~~GI~~lTvYaFSteN~kRp~ 156 (275)
..+.+-++.. -|.||+|+.|+.+. | |..=.+...+++.. -+.+..-+.+|. .+||+.+.+-.
T Consensus 38 ~~l~~ll~~~-~p~~i~v~FD~~~~tf-R~~~~~~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~i~~~g---------- 105 (887)
T TIGR00593 38 KMLLKLLKEE-KPTYVAVAFDSGTPTF-RHEAYAEYKANRAPTPEELIEQIPLIKELLDALGIPILEVEG---------- 105 (887)
T ss_pred HHHHHHHHhc-CCCEEEEEEcCCCCcc-hHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHCCCcEEeeCC----------
Confidence 3444444433 48999999998542 3 22222223333333 344555555555 58998887643
Q ss_pred HHHHHHHHHHHHh
Q 044091 157 VEVEFLMSLLESG 169 (275)
Q Consensus 157 ~EV~~Lm~l~~~~ 169 (275)
-|-++++.-+...
T Consensus 106 ~EADDiIatla~~ 118 (887)
T TIGR00593 106 YEADDVIATLAKQ 118 (887)
T ss_pred ccHHHHHHHHHHH
Confidence 3566666554443
No 156
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=23.51 E-value=7e+02 Score=24.33 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=43.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCce-EEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhh
Q 044091 180 ERIRISVIGDTSKLPKCLEELVINVVETTKNNTRF-QLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQEL 258 (275)
Q Consensus 180 ~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~-~lniai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L 258 (275)
.|.|+-+.|+-+ .+....+-+.+ -++ .+.++..+++++++.+..+.+. .+..-.++-|...+.+.+
T Consensus 273 ~Gkrv~i~gd~~----~~~~l~~~L~e-----lGm~~v~~~t~~~~~~~~~~~~~~l~----~~~~v~~~~d~~~l~~~i 339 (407)
T TIGR01279 273 RGKKIFFFGDNL----LELPLARFLKR-----CGMEVVECGTPYIHRRFHAAELALLE----GGVRIVEQPDFHRQLQRI 339 (407)
T ss_pred CCCEEEEECCch----HHHHHHHHHHH-----CCCEEEEecCCCCChHHHHHHHhhcC----CCCeEEeCCCHHHHHHHH
Confidence 588999999853 22222222332 233 4556667788887766544332 222223445777777777
Q ss_pred hcCCCCCCCCcEEE
Q 044091 259 ETNCTEFPYPDLLI 272 (275)
Q Consensus 259 ~t~~~~~PdPDLLI 272 (275)
... +|||+|
T Consensus 340 ~~~-----~pDlli 348 (407)
T TIGR01279 340 RAT-----RPDLVV 348 (407)
T ss_pred Hhc-----CCCEEe
Confidence 653 699998
No 157
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.08 E-value=2.3e+02 Score=26.24 Aligned_cols=46 Identities=13% Similarity=0.285 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeec----CCCCCCHHHHHHHHHHHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSS----DNWFRPEVEVEFLMSLLE 167 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSt----eN~kRp~~EV~~Lm~l~~ 167 (275)
...+.+.+|++.|.+.||+.+-=-.||. +-=+..+++|..|+..++
T Consensus 186 Idl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 186 IDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 4689999999999999988876555542 112344567888877653
No 158
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=23.06 E-value=3.4e+02 Score=23.80 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=15.1
Q ss_pred hhHHHHhccCCCCCCEEEEE-ec
Q 044091 82 APALAEELQRESMPRHVAVI-MD 103 (275)
Q Consensus 82 ~~~l~~~l~~~~iPrHIAiI-mD 103 (275)
...+...+..+.++-+|++| .|
T Consensus 14 ~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 14 LQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred HHHHHHHHHcCCCCceEEEEEEC
Confidence 34556666777888888875 55
No 159
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=22.99 E-value=8.1e+02 Score=24.90 Aligned_cols=119 Identities=24% Similarity=0.287 Sum_probs=74.5
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCC-CCCHHHHHHHHHHHHHhHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW-FRPEVEVEFLMSLLESGVKEEK 174 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~-kRp~~EV~~Lm~l~~~~l~~~~ 174 (275)
.-+||+..|.+-|+.- =+++.+|..+.||+.|.|=.+- -.| -|.++++..-+.-+.++.....
T Consensus 260 d~~av~~SGDGGWr~l---------------Dk~v~~~l~~~gvpVvGvdsLR-YfW~~rtPe~~a~Dl~r~i~~y~~~w 323 (456)
T COG3946 260 DTVAVFYSGDGGWRDL---------------DKEVAEALQKQGVPVVGVDSLR-YFWSERTPEQIAADLSRLIRFYARRW 323 (456)
T ss_pred ceEEEEEecCCchhhh---------------hHHHHHHHHHCCCceeeeehhh-hhhccCCHHHHHHHHHHHHHHHHHhh
Confidence 3589999998766532 2468899999999999995542 356 4899998876655554443221
Q ss_pred HHhhcCCcEEEEecCC----------CCCCHHHHHHHHHHHHHhcC-CCceEEEE--EecCCCHH--HHHHHHHHH
Q 044091 175 ESFIRERIRISVIGDT----------SKLPKCLEELVINVVETTKN-NTRFQLIV--AVSYSGQY--DLVQACQRI 235 (275)
Q Consensus 175 ~~~~~~~irvr~iGd~----------~~LP~~l~~~i~~~e~~T~~-~~~~~lni--ai~YgGR~--EIv~A~r~l 235 (275)
..-++-+||-. .+||+..++.++.+.-..-. ..++.+.| =++-+|.. +++.++.+|
T Consensus 324 -----~~~~~~liGySfGADvlP~~~n~L~~~~r~~v~~~~ll~l~~~~~fe~~v~gWlg~~~~g~~~~~~~~~~l 394 (456)
T COG3946 324 -----GAKRVLLIGYSFGADVLPFAYNRLPPATRQRVRMVSLLGLGRTADFEISVEGWLGMAGEGAGDVVPDIAKL 394 (456)
T ss_pred -----CcceEEEEeecccchhhHHHHHhCCHHHHHHHHHHHHHhccccceEEEEEeeeeccCCcCCCCcchhhhhC
Confidence 12356666632 36888888887776654333 23444333 23334433 677776655
No 160
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=22.90 E-value=7.5e+02 Score=24.46 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=39.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecC-CCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhh
Q 044091 180 ERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVSY-SGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQEL 258 (275)
Q Consensus 180 ~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~lniai~Y-gGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L 258 (275)
.|.++-+.++.+. .......+. .--++.+-.+..+ .-++++....+.+. .+.+-.+|.+...+.+.+
T Consensus 316 ~gkrvai~~~~~~----~~~~~~~ll----~elGm~v~~~~~~~~~~~~~~~~l~~l~----~~~~~v~~~~~~e~~~~i 383 (443)
T TIGR01862 316 QGKRVCLYIGGSR----LWHWIGSAE----EDLGMEVVAVGYEFAHEDDYEKTMKRMG----EGTLLIDDPNELEFEEIL 383 (443)
T ss_pred cCCeEEEECCchh----HHHHHHHHH----HHCCCEEEEeccccccHHHHHHHHHhCC----CceEEecCCCHHHHHHHH
Confidence 3778887766432 111111011 1234555555333 34555655444332 223334566766777666
Q ss_pred hcCCCCCCCCcEEEec
Q 044091 259 ETNCTEFPYPDLLIRT 274 (275)
Q Consensus 259 ~t~~~~~PdPDLLIRT 274 (275)
... +|||+|=.
T Consensus 384 ~~~-----~pdllig~ 394 (443)
T TIGR01862 384 EKL-----KPDIIFSG 394 (443)
T ss_pred Hhc-----CCCEEEEc
Confidence 542 58999843
No 161
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=22.83 E-value=2.9e+02 Score=23.69 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=29.1
Q ss_pred CCEEEEEecCCchHHHHcCCCCCcc--h--hhhHHHHHHHHHHHHHcCCCeEEEEeeecC
Q 044091 95 PRHVAVIMDGNRRWAHLRGLPVGSG--Y--EAGVKSLKTLVELCCKWGIRVLTVFAFSSD 150 (275)
Q Consensus 95 PrHIAiImDGNRRwAk~~gl~~~~G--h--~~G~~~l~eiv~wc~~~GI~~lTvYaFSte 150 (275)
|+++.|++|--+ .++.+...+ + ...-+.+..++..|..+.-..+.+|.|+.+
T Consensus 2 ~~dvv~~ID~Sg----SM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~ 57 (199)
T cd01457 2 NRDYTLLIDKSG----SMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGD 57 (199)
T ss_pred CcCEEEEEECCC----cCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCC
Confidence 678999999311 111110001 1 122345666677777776666888888865
No 162
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=22.78 E-value=2e+02 Score=30.57 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=42.0
Q ss_pred HHHHHHHcCCCeEEE-EeeecCC-CCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCC
Q 044091 130 LVELCCKWGIRVLTV-FAFSSDN-WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTS 191 (275)
Q Consensus 130 iv~wc~~~GI~~lTv-YaFSteN-~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~ 191 (275)
+-.|+..+|.+.||| |.+-.|| |-|+-+||=+-+.-+- .+...+---|=||-..||-.
T Consensus 419 Lr~Wa~aL~cPiiSVdYSLAPEaPFPRaleEv~fAYcW~i----nn~allG~TgEriv~aGDSA 478 (880)
T KOG4388|consen 419 LRSWAQALGCPIISVDYSLAPEAPFPRALEEVFFAYCWAI----NNCALLGSTGERIVLAGDSA 478 (880)
T ss_pred HHHHHHHhCCCeEEeeeccCCCCCCCcHHHHHHHHHHHHh----cCHHHhCcccceEEEeccCC
Confidence 568999999999999 4555788 8999999877554322 33344555577788888764
No 163
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=54 Score=28.66 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEEecCCchHHHHcCCCC
Q 044091 97 HVAVIMDGNRRWAHLRGLPV 116 (275)
Q Consensus 97 HIAiImDGNRRwAk~~gl~~ 116 (275)
||-+|.|||+-+.|..|+..
T Consensus 99 ~I~fi~Dg~geFTk~~Gm~~ 118 (165)
T COG0678 99 NIKFIPDGNGEFTKAMGMLV 118 (165)
T ss_pred cEEEecCCCchhhhhcCcee
Confidence 99999999999999999864
No 164
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=22.74 E-value=5.5e+02 Score=22.85 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=37.2
Q ss_pred chhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEE
Q 044091 119 GYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISV 186 (275)
Q Consensus 119 Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~ 186 (275)
-..+.++.+.+.++.|..+|++.|+++.=.. ...+.++ -++.+.+.+++..+ .+.|+++-+
T Consensus 78 ~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~--~~~~~e~---~~~~~~~~l~~l~~--~~~gv~l~l 138 (273)
T smart00518 78 KVEKSIERLIDEIKRCEELGIKALVFHPGSY--LKQSKEE---ALNRIIESLNEVID--ETKGVVILL 138 (273)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccccc--cCCCHHH---HHHHHHHHHHHHHh--ccCCcEEEE
Confidence 4567788999999999999999999864211 1222232 23334444443333 156777644
No 165
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.74 E-value=4.4e+02 Score=21.72 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHcCCCeEEEEe
Q 044091 123 GVKSLKTLVELCCKWGIRVLTVFA 146 (275)
Q Consensus 123 G~~~l~eiv~wc~~~GI~~lTvYa 146 (275)
+.+.+.++++|+.+.||..+.+.-
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g 34 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP 34 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH
Confidence 678899999999999999887753
No 166
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.70 E-value=1.1e+02 Score=29.40 Aligned_cols=30 Identities=10% Similarity=0.266 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHHHHHcCCCeEEEEeeec
Q 044091 120 YEAGVKSLKTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 120 h~~G~~~l~eiv~wc~~~GI~~lTvYaFSt 149 (275)
+..|+++..++++.|.++|++.||+-.=+.
T Consensus 133 ~p~g~rKa~R~m~lA~~f~iPvVtlvDTpG 162 (316)
T TIGR00513 133 APEGYRKALRLMKMAERFKMPIITFIDTPG 162 (316)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCC
Confidence 458899999999999999999999977554
No 167
>PHA00439 exonuclease
Probab=22.48 E-value=3.6e+02 Score=25.69 Aligned_cols=92 Identities=9% Similarity=0.056 Sum_probs=48.5
Q ss_pred hHHHHhccC--CCCCCEEEEEecCCchHHHHcCCCCCcchhhhH---HHHHHHHHHHHH-cCCCeEEEEeeecCCCCCCH
Q 044091 83 PALAEELQR--ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGV---KSLKTLVELCCK-WGIRVLTVFAFSSDNWFRPE 156 (275)
Q Consensus 83 ~~l~~~l~~--~~iPrHIAiImDGNRRwAk~~gl~~~~Gh~~G~---~~l~eiv~wc~~-~GI~~lTvYaFSteN~kRp~ 156 (275)
+.|.+.+.. .--|.||+|..|+..-| |..=.+...+++... .....++++..+ +||+.+..-.
T Consensus 50 ~~L~kl~~~~k~~~p~~i~vaFD~~~tf-R~elyp~YKanR~~~p~~~~~~~~i~el~~~~gi~~i~~~G---------- 118 (286)
T PHA00439 50 DSIKSYKTRKKAWKDAPIVLAFTDSVNW-RKEVVPTYKANRKAKRKPVGYRKFLEELMAREEWKSILEPG---------- 118 (286)
T ss_pred HHHHHHHHhhccCCCCeEEEEECCCCCh-HhhhhhHhcCCCCCCCCchhhHHHHHHHHHhCCCCEEeeCC----------
Confidence 444444433 13589999999975555 222234444444321 123444444443 6888776533
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcCCc-EEE-EecCCCC
Q 044091 157 VEVEFLMSLLESGVKEEKESFIRERI-RIS-VIGDTSK 192 (275)
Q Consensus 157 ~EV~~Lm~l~~~~l~~~~~~~~~~~i-rvr-~iGd~~~ 192 (275)
-|-++++..+.... .+.|. .+. +.||.++
T Consensus 119 ~EADDvIgtla~~~-------~~~g~~~vvIvS~DKDl 149 (286)
T PHA00439 119 LEGDDVMGIIGTNP-------SLFGFKKAVLVSCDKDF 149 (286)
T ss_pred ccHHHHHHHHHHHH-------HHCCCCeEEEEeCCCCH
Confidence 46777776554432 23344 444 4466654
No 168
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=22.26 E-value=3.4e+02 Score=27.23 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=41.2
Q ss_pred CCCCEEE---EEecCCchHHHHcCCCCC--------------cchhhh-------------HHHHHHHHHHHHHcCCCeE
Q 044091 93 SMPRHVA---VIMDGNRRWAHLRGLPVG--------------SGYEAG-------------VKSLKTLVELCCKWGIRVL 142 (275)
Q Consensus 93 ~iPrHIA---iImDGNRRwAk~~gl~~~--------------~Gh~~G-------------~~~l~eiv~wc~~~GI~~l 142 (275)
++|-|+- +=.|.=+.||+.+|+... .+|+-| ++...+.+++|.++|-+.|
T Consensus 88 ~v~LH~~wd~vD~~elk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v 167 (412)
T TIGR02629 88 NVSLHIPWDKADPKELKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKALGSKAL 167 (412)
T ss_pred CccccCCCCcCCHHHHHHHHHHcCCccceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 6788884 433345699999998532 254444 6778889999999999999
Q ss_pred EEEee
Q 044091 143 TVFAF 147 (275)
Q Consensus 143 TvYaF 147 (275)
|+|.=
T Consensus 168 ~IW~g 172 (412)
T TIGR02629 168 TVWIG 172 (412)
T ss_pred EEECC
Confidence 99874
No 169
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=22.05 E-value=1.5e+02 Score=24.26 Aligned_cols=63 Identities=22% Similarity=0.182 Sum_probs=34.0
Q ss_pred EEEEEec-CCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcC-CCeEEEEeeecCCCCCCHHHHHHHHHHHH
Q 044091 97 HVAVIMD-GNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWG-IRVLTVFAFSSDNWFRPEVEVEFLMSLLE 167 (275)
Q Consensus 97 HIAiImD-GNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~G-I~~lTvYaFSteN~kRp~~EV~~Lm~l~~ 167 (275)
.|.|=+| ++....+..+. | ...+.+.+.++++.+.| +..-+.+.... + .-+.+++..+++.+.
T Consensus 113 ~i~isl~~~~~~~~~~~~~----~--~~~~~~~~~i~~~~~~g~~~v~~~~~~g~-~-~~~~~~~~~~~~~~~ 177 (216)
T smart00729 113 RVSLGVQSGSDEVLKAINR----G--HTVEDVLEAVEKLREAGPIKVSTDLIVGL-P-GETEEDFEETLKLLK 177 (216)
T ss_pred eEEEecccCCHHHHHHhcC----C--CCHHHHHHHHHHHHHhCCcceEEeEEecC-C-CCCHHHHHHHHHHHH
Confidence 5666666 34333222111 1 23588888899999999 54333333221 1 123566777666543
No 170
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=21.99 E-value=2.3e+02 Score=25.01 Aligned_cols=42 Identities=31% Similarity=0.556 Sum_probs=28.2
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHH-HHHHHHHHHcCCCeEEEEeeec
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSL-KTLVELCCKWGIRVLTVFAFSS 149 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l-~eiv~wc~~~GI~~lTvYaFSt 149 (275)
+|||||=- +|+|...| |++.+ .++.....+.|++ +|||..+.
T Consensus 2 kkIaIiGt--------rGIPa~YG---GfET~ve~L~~~l~~~g~~-v~Vyc~~~ 44 (185)
T PF09314_consen 2 KKIAIIGT--------RGIPARYG---GFETFVEELAPRLVSKGID-VTVYCRSD 44 (185)
T ss_pred ceEEEEeC--------CCCCcccC---cHHHHHHHHHHHHhcCCce-EEEEEccC
Confidence 68998854 68887654 45553 3455556667777 78888754
No 171
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=21.79 E-value=2.8e+02 Score=26.42 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCC
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN 151 (275)
+..+.+.+.++++.++|++++++|.+..+-
T Consensus 164 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~ 193 (360)
T TIGR00539 164 QTLNSLKEELKLAKELPINHLSAYALSVEP 193 (360)
T ss_pred CCHHHHHHHHHHHHccCCCEEEeecceEcC
Confidence 557889999999999999999999998643
No 172
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.64 E-value=4.7e+02 Score=22.94 Aligned_cols=97 Identities=19% Similarity=0.196 Sum_probs=58.0
Q ss_pred CEEEEEecCCchHHHHcCCCCCcchhhhHHHHHHHHHHHHHcCCCeEEEEeeecCCCCC-CHHHHHHHHHHHHHhHHHHH
Q 044091 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFR-PEVEVEFLMSLLESGVKEEK 174 (275)
Q Consensus 96 rHIAiImDGNRRwAk~~gl~~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kR-p~~EV~~Lm~l~~~~l~~~~ 174 (275)
..|.+....|--+.+.+- .....+.++.+.++++++.+.|++. .|+.+...| +.+++..+.+.+.+
T Consensus 82 ~~i~i~~~~s~~~~~~~~---~~~~~~~~~~~~~~v~~ak~~g~~v----~~~~~~~~~~~~~~~~~~~~~~~~------ 148 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNL---NKSREEALERIEEAVKYAKELGYEV----AFGCEDASRTDPEELLELAEALAE------ 148 (237)
T ss_dssp SEEEEEEETSHHHHHHHT---CSHHHHHHHHHHHHHHHHHHTTSEE----EEEETTTGGSSHHHHHHHHHHHHH------
T ss_pred CEEEecCcccHHHHHHhh---cCCHHHHHHHHHHHHHHHHhcCCce----EeCccccccccHHHHHHHHHHHHH------
Confidence 466666666654444331 1245566889999999999999988 666666544 44544444433322
Q ss_pred HHhhcCCcEEEEecCC--CCCCHHHHHHHHHHHHHhcC
Q 044091 175 ESFIRERIRISVIGDT--SKLPKCLEELVINVVETTKN 210 (275)
Q Consensus 175 ~~~~~~~irvr~iGd~--~~LP~~l~~~i~~~e~~T~~ 210 (275)
.|+..-.+-|. ...|..+.+.++.+.+...+
T Consensus 149 -----~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 149 -----AGADIIYLADTVGIMTPEDVAELVRALREALPD 181 (237)
T ss_dssp -----HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT
T ss_pred -----cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC
Confidence 23443334444 35788888888888776554
No 173
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=21.63 E-value=2.9e+02 Score=26.59 Aligned_cols=50 Identities=6% Similarity=0.019 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCC----C--------CCH-HHHHHHHHHHHHhHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNW----F--------RPE-VEVEFLMSLLESGVK 171 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~----k--------Rp~-~EV~~Lm~l~~~~l~ 171 (275)
+..+.+.+.++++.++++.++++|.++.+-. + -|. ++...++....+.|.
T Consensus 167 qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 229 (370)
T PRK06294 167 QSLSDFIVDLHQAITLPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLT 229 (370)
T ss_pred CCHHHHHHHHHHHHccCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999986443 1 132 334556666666665
No 174
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=21.39 E-value=3.9e+02 Score=25.35 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHH
Q 044091 124 VKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVIN 203 (275)
Q Consensus 124 ~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~ 203 (275)
.+.+.+++++..+.+++.|-+|+..+-. .....+..++.+ +. ++.+.+.-+ ...+
T Consensus 29 ~~~l~~~~~~l~~~~~~~I~~~g~GsS~---------~aa~~~~~~~~k----~~--~i~v~~~~~-----~~~~----- 83 (340)
T PRK11382 29 VPLVHAIVEEMVKRDIDRIYFVACGSPL---------NAAQTAKHLADR----FS--DLQVYAISG-----WEFC----- 83 (340)
T ss_pred hHHHHHHHHHHHhCCCCEEEEEEechHH---------HHHHHHHHHHHH----Hc--CCCeEEecc-----HHHH-----
Confidence 4668889999999999999999986521 111122222221 11 233333222 1111
Q ss_pred HHHHhc-CCCceEEEEEecCCC-HHHHHHHHHHHHH
Q 044091 204 VVETTK-NNTRFQLIVAVSYSG-QYDLVQACQRIAM 237 (275)
Q Consensus 204 ~e~~T~-~~~~~~lniai~YgG-R~EIv~A~r~l~~ 237 (275)
..+. .-+.-.|.|+++|+| ..|+++|++.+-+
T Consensus 84 --~~~~~~~~~~~lvI~iS~SGeT~e~i~al~~ak~ 117 (340)
T PRK11382 84 --DNTPYRLDDRCAVIGVSDYGKTEEVIKALELGRA 117 (340)
T ss_pred --hcCCcCCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 1122 223447899999988 5788888876543
No 175
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=21.35 E-value=3.6e+02 Score=28.17 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=44.9
Q ss_pred HHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 044091 134 CCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207 (275)
Q Consensus 134 c~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~~~e~~ 207 (275)
..+-|+..--.+|||.+. -.+.-|++.|..-.+.+. .+.++|..+-++||...+.+++.+++.++-..
T Consensus 493 ~~~~G~~~~l~~AfSRdq--~~KiYVQd~lre~~del~----~~l~~ga~~YVCGd~~~Ma~dV~~AL~~il~~ 560 (587)
T COG0369 493 YLKDGVLTRLDLAFSRDQ--EEKIYVQDRLREQADELW----EWLEEGAHIYVCGDAKGMAKDVEEALLDILAK 560 (587)
T ss_pred HHhcCCceeEEEEEeecC--CCCccHHHHHHHhHHHHH----HHHHCCCEEEEeCCCccchHHHHHHHHHHHHh
Confidence 345576555566888765 334456665543333332 24456799999999999999999998877654
No 176
>smart00470 ParB ParB-like nuclease domain. Plasmid RK2 ParB preferentially cleaves single-stranded DNA. ParB also nicks supercoiled plasmid DNA preferably at sites with potential single-stranded character, like AT-rich regions and sequences that can form cruciform structures. ParB also exhibits 5--3 exonuclease activity.
Probab=21.28 E-value=43 Score=25.08 Aligned_cols=13 Identities=38% Similarity=0.532 Sum_probs=10.1
Q ss_pred EEEecCCchHHHH
Q 044091 99 AVIMDGNRRWAHL 111 (275)
Q Consensus 99 AiImDGNRRwAk~ 111 (275)
.+|+||++||.-.
T Consensus 48 ~~vidG~~R~~A~ 60 (89)
T smart00470 48 YEIIDGERRLRAA 60 (89)
T ss_pred EEEEeCHHHHHHH
Confidence 5899999996543
No 177
>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.18 E-value=1.9e+02 Score=30.10 Aligned_cols=91 Identities=25% Similarity=0.401 Sum_probs=56.8
Q ss_pred Eec-CCchHHHHcCCC-------------CCcchhhhHHHHHHHHHHHHHcCCCeEEEEe-eecCCCCCCHHHHHHHHHH
Q 044091 101 IMD-GNRRWAHLRGLP-------------VGSGYEAGVKSLKTLVELCCKWGIRVLTVFA-FSSDNWFRPEVEVEFLMSL 165 (275)
Q Consensus 101 ImD-GNRRwAk~~gl~-------------~~~Gh~~G~~~l~eiv~wc~~~GI~~lTvYa-FSteN~kRp~~EV~~Lm~l 165 (275)
|.| ||.=|+.++--+ ...||..++ ++=.+...|+++----. +|+ -|.+|+.|..+.+..+|+|
T Consensus 395 IaDlGNACW~~khFT~DIQTRQYRapEVllGsgY~~~A-DiWS~AC~~FELaTGDy-LFePhsG~~Y~rDEDHiA~i~EL 472 (590)
T KOG1290|consen 395 IADLGNACWVHKHFTEDIQTRQYRAPEVLLGSGYSTSA-DIWSTACMAFELATGDY-LFEPHSGENYSRDEDHIALIMEL 472 (590)
T ss_pred EeeccchhhhhhhhchhhhhhhccCcceeecCCCCCch-hHHHHHHHHHHhhcCce-eecCCCCCCCCccHHHHHHHHHH
Confidence 455 999998766432 123555554 46667777777732222 233 5789999999999999999
Q ss_pred HHHhHHH------H-HHHhhcCCcEEEEecCCCCCC
Q 044091 166 LESGVKE------E-KESFIRERIRISVIGDTSKLP 194 (275)
Q Consensus 166 ~~~~l~~------~-~~~~~~~~irvr~iGd~~~LP 194 (275)
+-..=.. + .+++.+ .-.+|.|-.+-..|
T Consensus 473 LG~iPr~ia~~Gk~SRdFFnr-~G~LrhI~~LK~Wp 507 (590)
T KOG1290|consen 473 LGKIPRKIALGGKYSRDFFNR-RGELRHIRRLKPWP 507 (590)
T ss_pred HhhccHHHHhcCcchHhhhcc-ccceecccccCCCc
Confidence 7654221 1 234444 44577777775544
No 178
>PRK12677 xylose isomerase; Provisional
Probab=21.14 E-value=4.4e+02 Score=25.77 Aligned_cols=64 Identities=6% Similarity=0.101 Sum_probs=38.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEee-ecCC--CCCCHHHHHHHHHHHHHhHHHHHHHhhc--CCcEEEEe
Q 044091 121 EAGVKSLKTLVELCCKWGIRVLTVFAF-SSDN--WFRPEVEVEFLMSLLESGVKEEKESFIR--ERIRISVI 187 (275)
Q Consensus 121 ~~G~~~l~eiv~wc~~~GI~~lTvYaF-SteN--~kRp~~EV~~Lm~l~~~~l~~~~~~~~~--~~irvr~i 187 (275)
+..++.+++.++++.++|++.|+++.= -..+ +..+ ...-.+.+.+.|....+...+ .||++-+-
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d---~~~a~~~~~eaL~~l~~~A~~~G~gV~laIE 178 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKD---VRAALDRYREAIDLLAAYVKDQGYDLRFALE 178 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCC---HHHHHHHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence 344788999999999999999999731 1111 1112 233344555555555555555 44776653
No 179
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=21.11 E-value=3.3e+02 Score=26.44 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHcCCCeEEEEeeecCCC----CC----CH-HHHHHHHHHHHHhHH
Q 044091 122 AGVKSLKTLVELCCKWGIRVLTVFAFSSDNW----FR----PE-VEVEFLMSLLESGVK 171 (275)
Q Consensus 122 ~G~~~l~eiv~wc~~~GI~~lTvYaFSteN~----kR----p~-~EV~~Lm~l~~~~l~ 171 (275)
+..+.+.+-++.+.++++.+|++|.++.+.. ++ |. ++...+++++.++|.
T Consensus 185 qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~ 243 (394)
T PRK08898 185 QTLDEALADVETALAFGPPHLSLYHLTLEPNTLFAKFPPALPDDDASADMQDWIEARLA 243 (394)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChhhhccCCCCChHHHHHHHHHHHHHHH
Confidence 3567777788889999999999999997542 22 23 345556677777775
No 180
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.87 E-value=7.7e+02 Score=23.83 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=39.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEE-EEecCCCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhh
Q 044091 180 ERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLI-VAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQEL 258 (275)
Q Consensus 180 ~~irvr~iGd~~~LP~~l~~~i~~~e~~T~~~~~~~ln-iai~YgGR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L 258 (275)
.|.|+-+.|+-+. .....+.+.+ -++.+. ++..|..+++.......+. .+..-.++-|.+.+.+.+
T Consensus 275 ~Gkrv~i~g~~~~----~~~la~~L~e-----lGm~vv~~~t~~~~~~~~~~~~~~l~----~~~~v~~~~d~~~l~~~i 341 (396)
T cd01979 275 RGKSIFFMGDNLL----EIPLARFLTR-----CGMIVVEVGTPYLDKRFQAAELELLP----PMVRIVEKPDNYRQLDRI 341 (396)
T ss_pred cCCEEEEECCchH----HHHHHHHHHH-----CCCEEEeeCCCcCChHHHHHHHHhcC----CCCeEEECCCHHHHHHHH
Confidence 4789988998532 2222222222 344443 3444677777655433332 122223344666666666
Q ss_pred hcCCCCCCCCcEEE
Q 044091 259 ETNCTEFPYPDLLI 272 (275)
Q Consensus 259 ~t~~~~~PdPDLLI 272 (275)
.. .+|||+|
T Consensus 342 ~~-----~~pDlli 350 (396)
T cd01979 342 RE-----LRPDLVV 350 (396)
T ss_pred Hh-----cCCCEEE
Confidence 54 3699997
No 181
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=20.76 E-value=6.3e+02 Score=22.78 Aligned_cols=51 Identities=18% Similarity=0.371 Sum_probs=33.3
Q ss_pred EEEEEecCCchHHHHcCCCCCcchhhhH--HHHHHHHHHHHHcCCC-eEEEEeeecCCCCCCH
Q 044091 97 HVAVIMDGNRRWAHLRGLPVGSGYEAGV--KSLKTLVELCCKWGIR-VLTVFAFSSDNWFRPE 156 (275)
Q Consensus 97 HIAiImDGNRRwAk~~gl~~~~Gh~~G~--~~l~eiv~wc~~~GI~-~lTvYaFSteN~kRp~ 156 (275)
-|++|+|--+ .| ..-|+.|. +.+.+++..+..+.=. .+.||.||+ +++|.+
T Consensus 3 rV~LVLD~SG------SM--~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~-~~~~~~ 56 (200)
T PF10138_consen 3 RVYLVLDISG------SM--RPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFST-EFDRLP 56 (200)
T ss_pred EEEEEEeCCC------CC--chhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCC-CCCcCC
Confidence 4889999321 12 23466662 4567788888887544 499999998 455544
No 182
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=20.56 E-value=8.4e+02 Score=25.25 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=64.7
Q ss_pred CcchhhhHHHHHHHHHHHHHcCCCeEEE-EeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCH
Q 044091 117 GSGYEAGVKSLKTLVELCCKWGIRVLTV-FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPK 195 (275)
Q Consensus 117 ~~Gh~~G~~~l~eiv~wc~~~GI~~lTv-YaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~ 195 (275)
.+.-++|+..+..=++-+..+||+.|-- -.|.++ ..+|+..|-+++.+ .|+.+-..---..=.+
T Consensus 348 v~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tD----t~~Ei~~i~~~~~~-----------~gv~~~ls~vwakGg~ 412 (554)
T COG2759 348 VDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTD----TEAEIAAIEKLCEE-----------HGVEVALSEVWAKGGE 412 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCC----CHHHHHHHHHHHHH-----------cCCceeehhhhhccCc
Confidence 4566799999999999999999997643 336554 68889887765443 3333322111111111
Q ss_pred HHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHh
Q 044091 196 CLEELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVK 240 (275)
Q Consensus 196 ~l~~~i~~~e~~T~~~~~~~lniai~YgGR~EIv~A~r~l~~~v~ 240 (275)
...+..+++.+.+.++. -++-.=|+-++.|-+-..++++++=
T Consensus 413 Gg~eLA~kVv~~~~~~~---~~f~~lYd~~~~i~~Ki~~I~~~iY 454 (554)
T COG2759 413 GGIELAKKVVEAIEQND---SEFKRLYDVEDPIEEKIEKIAKEIY 454 (554)
T ss_pred cHHHHHHHHHHHHhCCc---ccceeecccCCcHHHHHHHHHHHhc
Confidence 12233333344333321 2445569999999999999988764
No 183
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=20.43 E-value=4.4e+02 Score=21.73 Aligned_cols=42 Identities=14% Similarity=0.232 Sum_probs=26.9
Q ss_pred hHHHHcCCCCCc-chhhh------HHHHHHHHHHHHHcCCCeEEEEeee
Q 044091 107 RWAHLRGLPVGS-GYEAG------VKSLKTLVELCCKWGIRVLTVFAFS 148 (275)
Q Consensus 107 RwAk~~gl~~~~-Gh~~G------~~~l~eiv~wc~~~GI~~lTvYaFS 148 (275)
++|++.|..-.+ ....+ ...+.++.+++.+.||+..++..+.
T Consensus 2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~ 50 (213)
T PF01261_consen 2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPT 50 (213)
T ss_dssp HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEeccc
Confidence 466666665433 11111 2468899999999999977665543
No 184
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=20.42 E-value=1.1e+02 Score=24.42 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHhhhhcCCCCCCCCcE
Q 044091 224 GQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDL 270 (275)
Q Consensus 224 GR~EIv~A~r~l~~~v~~g~l~~edI~e~~i~~~L~t~~~~~PdPDL 270 (275)
+..|+...+|+|+.++..|.+++| .|...|+....--|.|.|
T Consensus 20 ~qpe~~~~Vr~LV~~L~~~~i~~E-----eF~~~Lq~~lns~~qP~l 61 (92)
T smart00549 20 SQPEVAERVRTLVLGLVNGTITAE-----EFTSRLQEALNSPLQPYL 61 (92)
T ss_pred CcchHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCCCchh
Confidence 337889999999999888877555 445455432112255655
No 185
>COG4001 Predicted metal-binding protein [General function prediction only]
Probab=20.33 E-value=1.2e+02 Score=24.22 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=28.1
Q ss_pred ecCCCHHHHHHHHHHHHHH---HhcCCCCCCCCCHHHHHhhhh
Q 044091 220 VSYSGQYDLVQACQRIAMK---VKDGLIEPNDVSESLIEQELE 259 (275)
Q Consensus 220 i~YgGR~EIv~A~r~l~~~---v~~g~l~~edI~e~~i~~~L~ 259 (275)
..||||+|-.=-||.+++- +.+.....-.+||+.|.++|.
T Consensus 42 ~alggR~daCwkCra~a~ivkkive~garAfgVdee~iRE~~~ 84 (102)
T COG4001 42 HALGGRDDACWKCRALASIVKKIVERGARAFGVDEEDIREQMH 84 (102)
T ss_pred HHHcCchhHHHHHHHHHHHHHHHHHhcchhcCCCHHHHHHHHH
Confidence 4699999987766665543 333345667789999988875
No 186
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=20.04 E-value=8.1e+02 Score=23.80 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHcCCCeEEEEeeecCCCCCCHHHHHHHHHHHHHhHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 044091 123 GVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVI 202 (275)
Q Consensus 123 G~~~l~eiv~wc~~~GI~~lTvYaFSteN~kRp~~EV~~Lm~l~~~~l~~~~~~~~~~~irvr~iGd~~~LP~~l~~~i~ 202 (275)
|.+-+..+.+.|.+.||..+|= .|+. +.++.+.++ +.+--||-.+.---++.+.+.
T Consensus 167 ~~e~l~~L~~~~~~~Gl~~~t~-v~d~-------~~~~~l~~~----------------vd~lkI~s~~~~n~~LL~~~a 222 (360)
T PRK12595 167 GVEGLKILKQVADEYGLAVISE-IVNP-------ADVEVALDY----------------VDVIQIGARNMQNFELLKAAG 222 (360)
T ss_pred CHHHHHHHHHHHHHcCCCEEEe-eCCH-------HHHHHHHHh----------------CCeEEECcccccCHHHHHHHH
Confidence 3455666677788888887773 4432 344444333 333445544443333333322
Q ss_pred HHHHHhcCCCceEEEEEecC-CCHHHHHHHHHHHHH
Q 044091 203 NVVETTKNNTRFQLIVAVSY-SGQYDLVQACQRIAM 237 (275)
Q Consensus 203 ~~e~~T~~~~~~~lniai~Y-gGR~EIv~A~r~l~~ 237 (275)
.++.-|+|.=+. ..=+||..|+..+..
T Consensus 223 --------~~gkPVilk~G~~~t~~e~~~Ave~i~~ 250 (360)
T PRK12595 223 --------RVNKPVLLKRGLSATIEEFIYAAEYIMS 250 (360)
T ss_pred --------ccCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 345567777776 577788888777653
Done!