RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 044091
(275 letters)
>gnl|CDD|184841 PRK14831, PRK14831, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 249
Score = 223 bits (571), Expect = 6e-73
Identities = 87/197 (44%), Positives = 119/197 (60%), Gaps = 2/197 (1%)
Query: 79 TSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWG 138
+ L +L + +P+HVAVIMDGN RWA RGLP G+ GV +LK L+ C WG
Sbjct: 5 PTKLQDLPADLDPQRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWG 64
Query: 139 IRVLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLE 198
I LT +AFS++NW RP EV FLM+L E ++ E E + E +RI +GD LPK L+
Sbjct: 65 IGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRFVGDLDPLPKSLQ 124
Query: 199 ELVINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQEL 258
E + E TKNN V +Y G+ ++VQA + IA +V+ G ++P+++ E+L E EL
Sbjct: 125 EEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSEIDENLFESEL 184
Query: 259 ETNCTEFPYPDLLIRTS 275
T PDLLIRTS
Sbjct: 185 YT--AGIKDPDLLIRTS 199
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
(cis-IPPS); homodimers which catalyze the successive
1'-4 condensation of the isopentenyl diphosphate (IPP)
molecule to trans,trans-farnesyl diphosphate (FPP) or to
cis,trans-FPP to form long-chain polyprenyl
diphosphates. A few can also catalyze the condensation
of IPP to trans-geranyl diphosphate to form the
short-chain cis,trans- FPP. In prokaryotes, the
cis-IPPS, undecaprenyl diphosphate synthase (UPP
synthase) catalyzes the formation of the carrier lipid
UPP in bacterial cell wall peptidooglycan biosynthesis.
Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl
diphosphate (dedol-PP) synthase catalyzes the formation
of the polyisoprenoid glycosyl carrier lipid dolichyl
monophosphate. cis-IPPS are mechanistically and
structurally distinct from trans-IPPS, lacking the DDXXD
motifs, yet requiring Mg2+ for activity.
Length = 221
Score = 220 bits (563), Expect = 4e-72
Identities = 78/181 (43%), Positives = 117/181 (64%), Gaps = 2/181 (1%)
Query: 95 PRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFR 154
P+HVA IMDGNRRWA RG+ G++AG + L+ ++ C + G++ +T++AFS++NW R
Sbjct: 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKR 60
Query: 155 PEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRF 214
P+ EV+FLM L ++ + + +RI +IGD S LP+ L++ + E TKNNT F
Sbjct: 61 PKEEVDFLMELFRDVLRRILKELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGF 120
Query: 215 QLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRT 274
L VA +Y G+ +++ A + IA KVK G + P D+ ES + + L T+ P PDLLIRT
Sbjct: 121 TLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPEDIDESTLNKHLYTHD--SPDPDLLIRT 178
Query: 275 S 275
S
Sbjct: 179 S 179
>gnl|CDD|216392 pfam01255, Prenyltransf, Putative undecaprenyl diphosphate
synthase. Previously known as uncharacterized protein
family UPF0015, a single member of this family has been
identified as an undecaprenyl diphosphate synthase.
Length = 222
Score = 218 bits (559), Expect = 1e-71
Identities = 80/175 (45%), Positives = 118/175 (67%), Gaps = 2/175 (1%)
Query: 101 IMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVE 160
IMDGNRRWA RGLP G+ AG ++++ ++E C + GI+ LT++AFS++NW RP+ EV+
Sbjct: 1 IMDGNRRWAKKRGLPRTEGHRAGAEAVREILEWCLELGIKYLTLYAFSTENWKRPKEEVD 60
Query: 161 FLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAV 220
FLM LLE ++ E + +R+ VIGD S LP+ L + + + E TKNNT L +A+
Sbjct: 61 FLMELLERKLRRLLEDLHKNGVRVRVIGDLSLLPEDLRKAIEDAEEATKNNTGLTLNIAL 120
Query: 221 SYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS 275
+Y G+ ++V A +R+A V DG + P D+ E +IE+ L T+ + P PDLLIRTS
Sbjct: 121 NYGGRDEIVDAVKRLARDVADGKLSPEDIDEEVIEKYLYTS--DLPDPDLLIRTS 173
>gnl|CDD|223099 COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid
metabolism].
Length = 245
Score = 218 bits (557), Expect = 5e-71
Identities = 90/194 (46%), Positives = 125/194 (64%), Gaps = 3/194 (1%)
Query: 82 APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRV 141
P EL +PRHVA+IMDGNRRWA RGLP G++AG K+L+ ++E C + GI+
Sbjct: 5 LPLYKREL-PARLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKY 63
Query: 142 LTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201
LT++AFS++NW RP+ EV FLM L E ++EE + + +RI +IGD S+LP+ + E +
Sbjct: 64 LTLYAFSTENWKRPKEEVSFLMELFEKALREELKKLHKNGVRIRIIGDLSRLPEEVREAI 123
Query: 202 INVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN 261
E TKNNT L +AV+Y G+ ++V A ++IA V G + P D+ E LI L T
Sbjct: 124 EKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYT- 182
Query: 262 CTEFPYPDLLIRTS 275
+ P PDLLIRTS
Sbjct: 183 -SGLPDPDLLIRTS 195
>gnl|CDD|129165 TIGR00055, uppS, undecaprenyl diphosphate synthase. This enzyme
builds undecaprenyl diphosphate, a molecule that in
bacteria is used a carrier in synthesizing cell wall
components. Alternate name: undecaprenyl pyrophosphate
synthetase. Activity has been demonstrated
experimentally for members of this family from
Micrococcus luteus, E. coli, Haemophilus influenzae, and
Streptococcus pneumoniae [Cell envelope, Biosynthesis
and degradation of surface polysaccharides and
lipopolysaccharides].
Length = 226
Score = 204 bits (521), Expect = 6e-66
Identities = 82/180 (45%), Positives = 114/180 (63%), Gaps = 2/180 (1%)
Query: 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
RHVA+IMDGN RWA +G P G++AGVKSL+ ++ C G+ LT++AFS++NW RP
Sbjct: 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRP 60
Query: 156 EVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQ 215
+ EV+FLM L E + E + R +RI +IGD S L K L+E + E TKNNT F
Sbjct: 61 KEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFT 120
Query: 216 LIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRTS 275
L +A +Y G+ +++ A ++IA KVK G + P D+ E + + L T P DLLIRTS
Sbjct: 121 LNIAFNYGGRNEILHAVKQIAEKVKSGKLLPEDIDEETLNKHLYTA--NLPPVDLLIRTS 178
>gnl|CDD|184840 PRK14830, PRK14830, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 251
Score = 200 bits (510), Expect = 7e-64
Identities = 79/189 (41%), Positives = 122/189 (64%), Gaps = 2/189 (1%)
Query: 87 EELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFA 146
EEL + ++P+H+A+IMDGN RWA R LP +G++AG+ ++K + + + G++VLT++A
Sbjct: 15 EELDKGNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYA 74
Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVE 206
FS++NW RP+ EV+FLM+L + + I ++++VIGDT +LP+ + +E
Sbjct: 75 FSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIE 134
Query: 207 TTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFP 266
TKNNT L A++Y G+ ++V A + IA V DG + P D++E LI L T P
Sbjct: 135 KTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPEDITEELISNYLMTK--GLP 192
Query: 267 YPDLLIRTS 275
PDLLIRTS
Sbjct: 193 DPDLLIRTS 201
>gnl|CDD|237831 PRK14836, PRK14836, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 182 bits (463), Expect = 9e-57
Identities = 80/184 (43%), Positives = 115/184 (62%), Gaps = 2/184 (1%)
Query: 92 ESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDN 151
E++PRH+A+IMDGN RWA RG P G+ AGV++++ +E C + GI +LT+FAFSS+N
Sbjct: 12 ENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSEN 71
Query: 152 WFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNN 211
W RP EV LM L + E + R IR+ IGD S+L L+E + T +N
Sbjct: 72 WLRPADEVSALMELFLKALDREVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASN 131
Query: 212 TRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLL 271
TR L +AVSY G++D+V A + +A +V G + P+++ E+L+ Q L + P PDL
Sbjct: 132 TRLILSLAVSYGGRWDIVTAARALAREVAAGKLAPDEIDEALLAQHLAL--ADLPEPDLF 189
Query: 272 IRTS 275
IRTS
Sbjct: 190 IRTS 193
>gnl|CDD|237829 PRK14834, PRK14834, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 249
Score = 179 bits (455), Expect = 1e-55
Identities = 76/194 (39%), Positives = 115/194 (59%), Gaps = 2/194 (1%)
Query: 82 APALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRV 141
A +E S+PRHVA+IMDGN RWA RGLP +G+ AGV++L+ +V + GI
Sbjct: 2 AAPAKDESDAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGY 61
Query: 142 LTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELV 201
LT+FAFSS+NW RP EV L LL ++ + R +R+ VIG+ + L + L+
Sbjct: 62 LTLFAFSSENWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVIGERAGLEADICALL 121
Query: 202 INVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN 261
E T+NNT L++A +Y + ++ +A +R+A +V +G ++P + I L+T
Sbjct: 122 NEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPASIDAETISANLDT- 180
Query: 262 CTEFPYPDLLIRTS 275
+ P PDL+IRTS
Sbjct: 181 -ADIPDPDLIIRTS 193
>gnl|CDD|237827 PRK14832, PRK14832, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 253
Score = 177 bits (449), Expect = 1e-54
Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 2/195 (1%)
Query: 81 DAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIR 140
D +L + +P+H+AVIMDGN RWA +GLP +G+ G ++LK L+ C WGI+
Sbjct: 5 DYVMRPPDLDPQKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIK 64
Query: 141 VLTVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEEL 200
LT +AFS++NW RP EV+FLM L E ++ E RE +RIS IGD S LPK L+
Sbjct: 65 ALTAYAFSTENWQRPIEEVDFLMLLFERLLRRELAQMHREGVRISFIGDLSALPKSLQTE 124
Query: 201 VINVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELET 260
+ + T NN VAV+Y + ++ +AC+++A V+ G + + V+E L+EQ L T
Sbjct: 125 MERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSADAVNEQLVEQHLYT 184
Query: 261 NCTEFPYPDLLIRTS 275
T P PDLLIRTS
Sbjct: 185 ADT--PPPDLLIRTS 197
>gnl|CDD|184846 PRK14838, PRK14838, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 242
Score = 165 bits (420), Expect = 1e-50
Identities = 74/190 (38%), Positives = 121/190 (63%), Gaps = 4/190 (2%)
Query: 85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
E++ +P+H+A+IMDGN RWA RG G++AG +++ + E + G++ LT+
Sbjct: 1 YKEQIDMNRIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTL 60
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
+ FS++NW RP EV LMSLL + E+E+F++ IR +IGD +KLP+ ++E +
Sbjct: 61 YTFSTENWNRPSDEVAALMSLLLDSI--EEETFMKNNIRFRIIGDIAKLPEEVQERLNEC 118
Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
E T NT L++A+SYS ++++ +A ++IA V++G + P +++E I + L TN
Sbjct: 119 EEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEEITEESISEHLTTNF-- 176
Query: 265 FPYPDLLIRT 274
P PDLLIRT
Sbjct: 177 MPDPDLLIRT 186
>gnl|CDD|173301 PRK14840, PRK14840, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 250
Score = 149 bits (378), Expect = 4e-44
Identities = 73/190 (38%), Positives = 109/190 (57%), Gaps = 6/190 (3%)
Query: 89 LQRESMPRHVAVIMDGNRRWAH----LRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
+S+PRHVA+IMDGNRRW SG+ G KSL +V+ GI VLT+
Sbjct: 13 PSLQSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTL 72
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINV 204
FAFS++N+ R + EV L SL S + + IR+ IGD SKLP+ L+ +
Sbjct: 73 FAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQA 132
Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTE 264
T + +R +L++A++Y G+ +LV+A +++ + + I +D+SE LI L+T +
Sbjct: 133 SSATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISSDDISEELISSYLDT--SG 190
Query: 265 FPYPDLLIRT 274
P PDLLIRT
Sbjct: 191 LPDPDLLIRT 200
>gnl|CDD|237828 PRK14833, PRK14833, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 146 bits (370), Expect = 5e-43
Identities = 63/185 (34%), Positives = 108/185 (58%), Gaps = 7/185 (3%)
Query: 93 SMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNW 152
+ +H+A+IMDGN RWA LRG +G++ GVK+L+ + C + LT++AFS++NW
Sbjct: 3 NTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENW 62
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
RP+ EV+FLM LL+ +K+E+ +++ IR IGD K L + ++ + E T++
Sbjct: 63 KRPKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFK 122
Query: 213 RFQLIVAVSYSGQYDLVQACQRI--AMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDL 270
F ++A++Y + ++ +A +++ + G +E E I L+T + P DL
Sbjct: 123 GFTQVLALNYGSKDEISRAFKKLLESPPSHIGELE---SLEEEISNCLDT--ADLPEVDL 177
Query: 271 LIRTS 275
LIRT
Sbjct: 178 LIRTG 182
>gnl|CDD|237832 PRK14839, PRK14839, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 239
Score = 139 bits (353), Expect = 2e-40
Identities = 69/190 (36%), Positives = 96/190 (50%), Gaps = 14/190 (7%)
Query: 89 LQRESMPR---HVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVF 145
+Q R HVA+IMDGN RWA RGLP +G+ AGV++++ +VE GI LT++
Sbjct: 1 MQSSLDRRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLY 60
Query: 146 AFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVV 205
AFSSDNW RP EV LM LL + ++ E E R +R++VIG +LP + E +
Sbjct: 61 AFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAE 120
Query: 206 ETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEF 265
T R L +AV YS + ++ A + P +S L +
Sbjct: 121 AATAGGDRLHLRIAVDYSARDAILAAAAKAL--------GPEGLSREAFSDLL---TGDG 169
Query: 266 PYPDLLIRTS 275
DLLIRT
Sbjct: 170 GDVDLLIRTG 179
>gnl|CDD|182326 PRK10240, PRK10240, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 229
Score = 132 bits (333), Expect = 1e-37
Identities = 64/173 (36%), Positives = 99/173 (57%), Gaps = 2/173 (1%)
Query: 102 MDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRPEVEVEF 161
MDGN RWA +G G++AG KS++ V GI LT++AFSS+NW RP EV
Sbjct: 1 MDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSA 60
Query: 162 LMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTRFQLIVAVS 221
LM L + E +S R +R+ +IGDTS+ L+E + T NT L +A +
Sbjct: 61 LMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAAN 120
Query: 222 YSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIRT 274
Y G++D+VQ +++A +V+ G ++P+ + E ++ Q + + E DL+IRT
Sbjct: 121 YGGRWDIVQGVRQLAEQVQQGNLQPDQIDEEMLNQHICMH--ELAPVDLVIRT 171
>gnl|CDD|237826 PRK14829, PRK14829, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 243
Score = 131 bits (332), Expect = 2e-37
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 2/193 (1%)
Query: 83 PALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVL 142
P + ++ + +PRH+AV+MDGN RWA RGL G++AG L +V + G+ L
Sbjct: 3 PLIPPDIPKNKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYL 62
Query: 143 TVFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVI 202
+++ FS++NW R EV FLM + +E +R+ G +L K + + +
Sbjct: 63 SLYTFSTENWKRSPDEVRFLMGFSRDVIHRRREQMDEWGVRVRWSGRRPRLWKSVIDELE 122
Query: 203 NVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNC 262
E TKNNT L+ V+Y G+ ++ A IA +V+DG I + V+E +I L
Sbjct: 123 AAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISGDRVTEKMISDHLYN-- 180
Query: 263 TEFPYPDLLIRTS 275
+ P DL +RTS
Sbjct: 181 PDMPDVDLFLRTS 193
>gnl|CDD|173302 PRK14841, PRK14841, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 233
Score = 126 bits (317), Expect = 3e-35
Identities = 71/182 (39%), Positives = 106/182 (58%), Gaps = 4/182 (2%)
Query: 94 MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
+P+HVA+IMDGN RWA RGLP G++ G + L V+ + GI+ LT F+FS++NW
Sbjct: 3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWK 62
Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
RP+ EVEFLM L + E E RER+R+ ++G LP+ + + V E TK R
Sbjct: 63 RPKEEVEFLMDLFVQMIDREMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDR 122
Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
L++A +Y G+ +++ A + I V G + +++E Q L + P PDL+IR
Sbjct: 123 MTLVIAFNYGGRREILDAVESILKDVSQG--KKIELTEETFRQYLYL--PDVPDPDLIIR 178
Query: 274 TS 275
TS
Sbjct: 179 TS 180
>gnl|CDD|173298 PRK14837, PRK14837, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 230
Score = 118 bits (298), Expect = 2e-32
Identities = 63/187 (33%), Positives = 104/187 (55%), Gaps = 8/187 (4%)
Query: 89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
+ + S+P HV +IMDGNRRWA +GL G++ G+K K +V+ K GI+ L+++ FS
Sbjct: 1 MNKNSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFS 60
Query: 149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
++NW R + E+E LM L+ + E + + I+I V GD L + +++ + + + T
Sbjct: 61 TENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFT 120
Query: 209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKD-GLIEPNDVSESLIEQELETNCTEFPY 267
KN L +A++Y G+ ++V+A ++ D + N S+ L EL P
Sbjct: 121 KNFDGLVLNLAINYGGRNEIVRAVKKFLSSGLDLETLNENVFSKFLDNPEL-------PD 173
Query: 268 PDLLIRT 274
DLLIRT
Sbjct: 174 LDLLIRT 180
>gnl|CDD|173288 PRK14827, PRK14827, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 296
Score = 106 bits (267), Expect = 2e-27
Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 4/193 (2%)
Query: 84 ALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLT 143
A A + + +P HVA++MDGN RWA RGL G++ G + + + GI+ L+
Sbjct: 57 AAAPRIPADRLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLS 116
Query: 144 VFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPK-CLEELVI 202
++AFS++NW R EV FLM V+ +++ + +RI +G +L + + EL I
Sbjct: 117 LYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWVGSRPRLWRSVINELAI 176
Query: 203 NVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNC 262
E TK+N + V+Y G+ ++ +A + IA + G + P ++ES I + L+
Sbjct: 177 -AEEMTKSNDVITINYCVNYGGRTEITEATREIAREAAAGRLNPERITESTIARHLQR-- 233
Query: 263 TEFPYPDLLIRTS 275
+ P DL +RTS
Sbjct: 234 PDIPDVDLFLRTS 246
>gnl|CDD|237830 PRK14835, PRK14835, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 275
Score = 106 bits (265), Expect = 3e-27
Identities = 63/197 (31%), Positives = 100/197 (50%), Gaps = 8/197 (4%)
Query: 85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTV 144
L E++ +PRH+ +I+DGNRR+A GL G+E GV+ ++E C + GI +T+
Sbjct: 32 LEREVKHGKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTI 91
Query: 145 FAFSSDNWFRPEVEVEFLMSLLESGVKE--EKESFIRERIRISVIGDTSKLPKCLEELVI 202
+ FS+DN+ R EVE LM+L E + R+R+ IG P + E +
Sbjct: 92 WVFSTDNFSRSPAEVETLMNLFEREARRMAVDPRIHANRVRVRAIGRHDGFPPKVLEALE 151
Query: 203 NVVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESL----IEQEL 258
+ E T+ + L +AV Y G+ ++V A + + ++ P +V+ L I L
Sbjct: 152 ELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEAAATGKSPEEVAAELTPEHISAHL 211
Query: 259 ETNCTEFPYPDLLIRTS 275
T P PD +IRTS
Sbjct: 212 YT--AGVPDPDFIIRTS 226
>gnl|CDD|237825 PRK14828, PRK14828, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 256
Score = 100 bits (251), Expect = 3e-25
Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 6/194 (3%)
Query: 85 LAEELQRESMPRHVAVIMDGNRRWAHLRGLP-VGSGYEAGVKSLKTLVELCCKWGIRVLT 143
L EL +P HV +I+DGNRRWA G V G+ AG + + C + + V+T
Sbjct: 17 LLGELDGAQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVT 76
Query: 144 VFAFSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVIN 203
++ S+DN RP E+ L+ ++E V++ R R+ +G LP +
Sbjct: 77 LYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPD---GRWRVRHVGSLDLLPAPSANRLKE 133
Query: 204 VVETTKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETN-- 261
E T N ++ VAV Y G+ ++V A + + + KD ++++ES+ + T+
Sbjct: 134 AEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLY 193
Query: 262 CTEFPYPDLLIRTS 275
P PDL+IRTS
Sbjct: 194 TGGQPDPDLVIRTS 207
>gnl|CDD|173303 PRK14842, PRK14842, undecaprenyl pyrophosphate synthase;
Provisional.
Length = 241
Score = 97.8 bits (243), Expect = 2e-24
Identities = 54/189 (28%), Positives = 97/189 (51%), Gaps = 5/189 (2%)
Query: 89 LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
L ++P H+AVIMDGN RWA +G G+ G ++ L++ ++G++ ++++AFS
Sbjct: 3 LFESTIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFS 62
Query: 149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
++NW RP E+ + LL ++ ++ IRI G KL + + + + + T
Sbjct: 63 TENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKT 122
Query: 209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP 268
K N + ++Y +L++A Q + + K + + + L E+E E P P
Sbjct: 123 KKNKNLTVNFCLNYGSHDELLRAAQEVFLARKA---KKVTLEKPLKEKEFEKFLYTSPLP 179
Query: 269 --DLLIRTS 275
DLLIRT+
Sbjct: 180 PVDLLIRTA 188
>gnl|CDD|185571 PTZ00349, PTZ00349, dehydrodolichyl diphosphate synthetase;
Provisional.
Length = 322
Score = 82.0 bits (202), Expect = 5e-18
Identities = 44/136 (32%), Positives = 83/136 (61%), Gaps = 3/136 (2%)
Query: 96 RHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWFRP 155
+H+++IMDGNRR+A +GL G+ G K+L ++E+C K I++L+VF+FS N+ R
Sbjct: 21 KHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRS 80
Query: 156 EVEVEFL--MSLLESGVKEEKESFIRE-RIRISVIGDTSKLPKCLEELVINVVETTKNNT 212
E+ FL ++LL ++ FI++ +I+I +IG+ S + +++ ++ E T+N
Sbjct: 81 PEEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFD 140
Query: 213 RFQLIVAVSYSGQYDL 228
L + SY+ + ++
Sbjct: 141 NILLNIFFSYTSRNEM 156
>gnl|CDD|223373 COG0296, GlgB, 1,4-alpha-glucan branching enzyme [Carbohydrate
transport and metabolism].
Length = 628
Score = 28.4 bits (64), Expect = 4.7
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 14/68 (20%)
Query: 56 TQHRRYLLFPAEEEEEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNR---RWAHLR 112
T R Y A E V+F AP R V+++ D N R +R
Sbjct: 18 THLRLYEKLGAHPIENGVSGVRFRVWAPN----------ARRVSLVGDFNDWDGRRMPMR 67
Query: 113 GLPVGSGY 120
SG
Sbjct: 68 DR-KESGI 74
>gnl|CDD|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 277
Score = 28.1 bits (63), Expect = 4.7
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVI 202
F EVE E L + E + FI ERI++ V + +P L E+VI
Sbjct: 93 FLTEVEPEETFFALSRLL--EGDYFIDERIKLRVYINGENVPDALNEVVI 140
>gnl|CDD|239274 cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small
monomeric protein with a conserved redox active CXXC
motif within a TRX fold, characterized by a glutaredoxin
(GRX)-like sequence and TRX-like activity profile. In
vitro, it displays protein disulfide reductase activity
that is dependent on TRX reductase, not glutathione
(GSH). It is part of the NrdHIEF operon, where NrdEF
codes for class Ib ribonucleotide reductase (RNR-Ib), an
efficient enzyme at low oxygen levels. Under these
conditions when GSH is mostly conjugated to spermidine,
NrdH can still function and act as a hydrogen donor for
RNR-Ib. It has been suggested that the NrdHEF system may
be the oldest RNR reducing system, capable of
functioning in a microaerophilic environment, where GSH
was not yet available. NrdH from Corynebacterium
ammoniagenes can form domain-swapped dimers, although it
is unknown if this happens in vivo. Domain-swapped
dimerization, which results in the blocking of the TRX
reductase binding site, could be a mechanism for
regulating the oxidation state of the protein.
Length = 73
Score = 26.4 bits (59), Expect = 4.9
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 72 EEREVKFTS----DAPALAEELQRESMPRHVAVIMDGNRRW 108
+ER + F + P EEL++ + R V V++ G+
Sbjct: 21 DERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHL 61
>gnl|CDD|234291 TIGR03642, cas_csx14, CRISPR-associated protein, Csx14 family.
This model describes a protein N-terminal protein
sequence domain strictly associated with CRISPR and
CRISPR-associated protein systems. This model and
TIGR02584 identify two separate clades from a larger
homology domain family, both CRISPR-associated, while
other homologs are found that may not be. Members are
found in bacteria that include Pelotomaculum
thermopropionicum SI, Thermoanaerobacter tengcongensis
MB4, and Roseiflexus sp. RS-1, and in archaea that
include Thermoplasma volcanium, Picrophilus torridus,
and Methanospirillum hungatei. The molecular function is
unknown.
Length = 124
Score = 27.0 bits (60), Expect = 5.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG 188
+ ++ MS+ VK+E+E++ ERI +++ G
Sbjct: 64 ILSDEDILTFMSIAAKEVKKERENYGCERIIVNISG 99
>gnl|CDD|131867 TIGR02820, formald_GSH, S-(hydroxymethyl)glutathione synthase. The
formation of S-(hydroxymethyl)glutathione synthase from
glutathione and formaldehyde occurs naturally, but this
enzyme speeds its formation in some species as part of a
pathway of formaldehyde detoxification [Cellular
processes, Detoxification, Central intermediary
metabolism, One-carbon metabolism].
Length = 182
Score = 27.4 bits (61), Expect = 5.6
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 147 FSSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIR 183
+ D W P F+ S++E+G E+ IR R+R
Sbjct: 121 SAEDGWSAPGF-AAFVSSIIETGTDPERMDGIRARLR 156
>gnl|CDD|187854 cd09723, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as csx13 family.
Length = 132
Score = 27.0 bits (60), Expect = 5.7
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 153 FRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIG 188
+ ++ MS+ VK+E+E++ ERI +++ G
Sbjct: 72 ILSDEDILTFMSIAAKEVKKERENYGCERIIVNISG 107
>gnl|CDD|185558 PTZ00329, PTZ00329, eukaryotic translation initiation factor 1A;
Provisional.
Length = 155
Score = 27.1 bits (60), Expect = 6.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 68 EEEEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRG 113
+ E E+RE+ F + A+ L+ R A DG +R H+RG
Sbjct: 18 DNEGEKRELVFKEEGQEYAQVLRMLGNGRLEAYCFDGVKRLCHIRG 63
>gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10. This subgroup
resembles the classical SDRs, but has an incomplete
match to the canonical glycine rich NAD-binding motif
and lacks the typical active site tetrad (instead of the
critical active site Tyr, it has Phe, but contains the
nearby Lys). SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 238
Score = 27.3 bits (61), Expect = 7.4
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 84 ALAEELQRESMPR--HVA-VIMDGNRRWAHLRG 113
ALA+ + RE P+ HVA VI+DG +R
Sbjct: 158 ALAQSMARELGPKGIHVAHVIIDGGIDTDFIRE 190
>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF);
Provisional.
Length = 145
Score = 26.7 bits (59), Expect = 7.9
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 68 EEEEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRG 113
E ++E+RE+ F D A+ L+ R A+ +DG +R H+RG
Sbjct: 18 EADDEKRELIFKEDGQEYAQVLRMLGNGRCEALCIDGTKRLCHIRG 63
>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain.
Length = 78
Score = 25.6 bits (57), Expect = 8.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 210 NNTRFQLIVAVSYSGQYDLVQ-ACQRIAMKVKD 241
+T F LI+A +Y L+ ACQ++A +K
Sbjct: 13 QDTLFDLILAANYLNIKGLLDLACQKVADMIKG 45
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 27.2 bits (60), Expect = 8.8
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 239 VKDGLIEPNDVSESLIEQELETN 261
+K+G I P++V+ LI++E+E++
Sbjct: 96 IKEGKIVPSEVTVKLIQKEMESS 118
>gnl|CDD|216344 pfam01175, Urocanase, Urocanase.
Length = 545
Score = 27.5 bits (62), Expect = 9.1
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 18/66 (27%)
Query: 68 EEEEEEREVKFTSDAPALAEELQRESMPRHVAVIMDGNRRWAHLRGLPV--------GSG 119
EE E R+ P +L RESM RHV +++ RG V
Sbjct: 271 EEAAELRK-----SDPEEFVKLARESMARHVEAMLE-----FQARGAEVFDYGNNIRQEA 320
Query: 120 YEAGVK 125
+AGV+
Sbjct: 321 QDAGVE 326
>gnl|CDD|143486 cd06811, PLPDE_III_yhfX_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme yhfX. This subfamily is composed
of the uncharacterized protein yhfX from Escherichia
coli K-12 and similar bacterial proteins. These proteins
are homologous to bacterial alanine racemases (AR),
which are fold type III PLP-dependent enzymes containing
an N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain. AR exists as homodimers
with active sites that lie at the interface between the
TIM barrel domain of one subunit and the beta-sandwich
domain of the other subunit. It catalyzes the
interconversion between L- and D-alanine, which is an
essential component of the peptidoglycan layer of
bacterial cell walls. Members of this subfamily may act
as PLP-dependent enzymes.
Length = 382
Score = 27.2 bits (61), Expect = 9.9
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 83 PALAEELQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAG--VKSLKTLVELCCKWGIR 140
P LA L +P VAV R H GLP+G G V+ + V
Sbjct: 67 PFLARALLEAGIPGAVAVDFKEARAL-HEAGLPLGH---VGHLVQIPRHQVPAVLAMRPE 122
Query: 141 VLTVF 145
V+TV+
Sbjct: 123 VITVY 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,930,123
Number of extensions: 1336566
Number of successful extensions: 1504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1480
Number of HSP's successfully gapped: 45
Length of query: 275
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 179
Effective length of database: 6,679,618
Effective search space: 1195651622
Effective search space used: 1195651622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)