RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 044091
         (275 letters)



>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score =  155 bits (393), Expect = 2e-47
 Identities = 69/182 (37%), Positives = 104/182 (57%), Gaps = 2/182 (1%)

Query: 94  MPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFSSDNWF 153
             RHVA+IMDGN RWA  +G     G++AG KS++  V      GI  LT++AFSS+NW 
Sbjct: 5   GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWN 64

Query: 154 RPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETTKNNTR 213
           RP  EV  LM L    +  E +S  R  +R+ +IGDTS+    L+E +      T  NT 
Sbjct: 65  RPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTG 124

Query: 214 FQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYPDLLIR 273
             L +A +Y G++D+VQ  +++A KV+ G ++P+ + E ++ Q +  +       DL+IR
Sbjct: 125 LTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHE--LAPVDLVIR 182

Query: 274 TS 275
           T 
Sbjct: 183 TG 184


>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Micrococcus luteus [TaxId: 1270]}
          Length = 229

 Score =  136 bits (342), Expect = 1e-39
 Identities = 62/187 (33%), Positives = 107/187 (57%), Gaps = 2/187 (1%)

Query: 89  LQRESMPRHVAVIMDGNRRWAHLRGLPVGSGYEAGVKSLKTLVELCCKWGIRVLTVFAFS 148
           +    +P+H+A+IMDGN RWA  + +P   G+  G+++++ +       G++ LT++AFS
Sbjct: 2   INAAQIPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFS 61

Query: 149 SDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVETT 208
           ++NW RP+ EV +LM L    +       I + +++  IG    LP   ++ V+   E T
Sbjct: 62  TENWSRPKDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKT 121

Query: 209 KNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDVSESLIEQELETNCTEFPYP 268
           K+NT   L+ A++Y G+ +++ A Q IA + K G I  +++SE+   + L       P P
Sbjct: 122 KHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYL--FTANMPDP 179

Query: 269 DLLIRTS 275
           +LLIRTS
Sbjct: 180 ELLIRTS 186


>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
           ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
          Length = 285

 Score = 27.8 bits (62), Expect = 1.2
 Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 21/98 (21%)

Query: 60  RYLLFPAEEEEEEEREVKF--TSDAPALAEELQRES----------MPRHVAVIMDGNRR 107
             L+    + +  +  +    T+   A  + L   S            +H  +I D   +
Sbjct: 120 AQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 179

Query: 108 WAH--------LRGLPVGSGYEAGVKS-LKTLVELCCK 136
            A         LR  P    Y   V      L+E   K
Sbjct: 180 QAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAK 217


>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 143

 Score = 25.8 bits (56), Expect = 4.7
 Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 148 SSDNWFRPEVEVEFLMSLLESGVKEEKESFIRERIRISVIGDTSKLPKCLEELVINVVET 207
           +S  WF    ++E   S    GV+ +KE   R +   ++I +  +     +  +   +  
Sbjct: 1   ASSRWFFTREQLENTPSRRC-GVEADKELSCR-QQAANLIQEMGQRLNVSQLTINTAIVY 58

Query: 208 TKNNTRFQLIVAVSYSGQYDLVQACQRIAMKVKDGLIEPNDV 249
                RF +  + +   +  +      +A KV++   +   V
Sbjct: 59  MH---RFYMHHSFTKFNKNIISSTALFLAAKVEEQARKLEHV 97


>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia
           coli [TaxId: 562]}
          Length = 127

 Score = 24.7 bits (54), Expect = 7.5
 Identities = 4/32 (12%), Positives = 12/32 (37%)

Query: 205 VETTKNNTRFQLIVAVSYSGQYDLVQACQRIA 236
           V+ +K+    +       S +    +  + +A
Sbjct: 64  VKFSKDRHLIETTSNKLKSREITFQEYRRNLA 95


>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
          {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 89

 Score = 24.1 bits (52), Expect = 8.2
 Identities = 7/34 (20%), Positives = 13/34 (38%)

Query: 64 FPAEEEEEEEREVKFTSDAPALAEELQRESMPRH 97
              EE  +E E K+   A    ++++      H
Sbjct: 5  SSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEH 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,008,779
Number of extensions: 46665
Number of successful extensions: 106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 14
Length of query: 275
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,254,276
Effective search space: 239566716
Effective search space used: 239566716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)