BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044092
(470 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli.
pdb|1XQF|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal
Structure Of Amtb Of E. Coli
Length = 418
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 216/432 (50%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NOP|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|3C1G|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 216/432 (50%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb
Complexed With The Signal Transduction Protein Glnk
Length = 412
Score = 187 bits (476), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 143/432 (33%), Positives = 216/432 (50%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|B Chain B, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|C Chain C, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|D Chain D, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|E Chain E, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
pdb|2NUU|F Chain F, Regulating The Escherichia Coli Ammonia Channel: The
Crystal Structure Of The Amtb-glnk Complex
Length = 415
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/427 (33%), Positives = 214/427 (50%), Gaps = 34/427 (7%)
Query: 23 NKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYR 82
+KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV++GY
Sbjct: 15 DKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYS 74
Query: 83 MSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGR 142
++FG F+G N + +N L A +G V FQ FA IT+ LI GA+ R
Sbjct: 75 LAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVGALAER 131
Query: 143 MNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFW 202
+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG A+
Sbjct: 132 IRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGLVGAYL 190
Query: 203 VGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHVCTATS 262
+G R+ +E F P+N+ GFN G + A+LA +NT V TA +
Sbjct: 191 IGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAA 250
Query: 263 LITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIPWFTMM 321
++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G + W M
Sbjct: 251 ILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTM 310
Query: 322 VVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFD 381
+ KR L +VDD V H V G +G ++TG+FA L VG G
Sbjct: 311 L--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGFAEGVT 356
Query: 382 MGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEIG-DEA 436
MG QLL L +A+ I + ++ + V LR+ EE G D
Sbjct: 357 MGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVN 406
Query: 437 AHGEEAY 443
+HGE AY
Sbjct: 407 SHGENAY 413
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+ +++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVEINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ G N G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ A IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSAACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+ +++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVAINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+ +++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVFINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
pdb|2NPJ|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 142/432 (32%), Positives = 215/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVFGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The
Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb
Length = 424
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 214/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ A IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSAACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ G N G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGANAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V H V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia
Channels Is Essential For Substrate Conductance
Length = 424
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 214/432 (49%), Gaps = 34/432 (7%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ + LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++FG F+G N + +N L A +G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLAFGEGNN--FFGNINWLMLKNIEL-TAVMGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+ +++ +AG
Sbjct: 118 ALAERIRFSAVLIFVVVWLTLSYIPIAHMVW-GGGLLASHGALDFAGGTVVAINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSG-SIP 316
TA +++ W+ + GK S++GA G I GLV +TPA G + A+I+G+ +G +
Sbjct: 237 ATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 317 WFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGL 376
W M+ KR L +VDD V V G +G ++TG+FA L VG
Sbjct: 297 WGVTML--KR---LLRVDDPCDVFGVAGVCGIVGCIMTGIFAASSLG---------GVGF 342
Query: 377 FYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICL----FIRILVPLRMSEEDMEI 432
G MG QLL L +A+ I + ++ + V LR+ EE
Sbjct: 343 AEGVTMGH----------QLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQERE 392
Query: 433 G-DEAAHGEEAY 443
G D +HGE AY
Sbjct: 393 GLDVNSHGENAY 404
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
pdb|1U7C|A Chain A, Crystal Structure Of Amtb From E.Coli With Methyl
Ammonium.
pdb|1U7G|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli
Length = 385
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 178/346 (51%), Gaps = 8/346 (2%)
Query: 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWV 77
+P +KADNA+ LV ++PG+ + YGG ++ K ++ FA V + WV
Sbjct: 1 APAVADKADNAFXXICTALVLFXTIPGIALFYGGLIRGKNVLSXLTQVTVTFALVCILWV 60
Query: 78 LWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAG 137
++GY ++ G F+G N +N L A G V FQ FA IT+ LI G
Sbjct: 61 VYGYSLASGEGNN--FFGNINWLXLKNIELT-AVXGSIYQYIHVAFQGSFACITVGLIVG 117
Query: 138 AVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGY 197
A+ R+ F A ++FV +WLT SY A +W G L+ G LD++GG V+H+++ +AG
Sbjct: 118 ALAERIRFPAVLIFVVVWLTLSYIPIAHXVW-GGGLLASHGALDFAGGTVVHINAAIAGL 176
Query: 198 TAAFWVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHV 257
A+ +G R+ +E F P+N+ GFN G + A+LA +NT V
Sbjct: 177 VGAYLIGKRVGFGKEAFKPHNLPXVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVV 236
Query: 258 CTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPW 317
TA +++ W+ + G S++GA G I GLV +TPA G + A+I+G+ +G
Sbjct: 237 ATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGL 296
Query: 318 FTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLN 363
+ + + + L +VDD V H V G +G + TG+FA L
Sbjct: 297 WGVTXLKR----LLRVDDPCDVFGVHGVCGIVGCIXTGIFAASSLG 338
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native)
pdb|2B2H|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (as)
pdb|2B2I|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (Ma)
pdb|2B2J|A Chain A, Ammonium Transporter Amt-1 From A. Fulgidus (xe)
Length = 399
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 202/425 (47%), Gaps = 34/425 (8%)
Query: 22 MNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGY 81
M+ + AW L + LV M VPG+ Y G V++K AVN ++ + ++ W+ +GY
Sbjct: 1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGY 59
Query: 82 RMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLG 141
+SFG + + G NY L G+ + + +Q +FAA+T+ ++ A+
Sbjct: 60 SVSFGND-------ISGIIGGLNYALLSGVKGE--DLLFMMYQMMFAAVTIAILTSAIAE 110
Query: 142 RMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAF 201
R ++++ LWLTF Y A +W GWL+KLG LD++GG V+H+SSG A A
Sbjct: 111 RAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLAKLGALDFAGGMVVHISSGFAALAVAM 169
Query: 202 WVGPRLTRDRERFPPNNIXXXXXXXXXXXXXXTGFNGGDPYVISTDASLAVLNTHVCTAT 261
+G R + P++I GFNGG + A AV+ T+ A
Sbjct: 170 TIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAV 229
Query: 262 SLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMM 321
+ W+++ I GK +G V G I GL ITPAAG V AI++GL +G + + M
Sbjct: 230 AGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMD 288
Query: 322 VVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFD 381
K+ K+D+++ H + G G + G+ A P++N Y GL +G
Sbjct: 289 FRIKK-----KIDESLDAWAIHGIGGLWGSVAVGILANPEVN--------GYAGLLFGNP 335
Query: 382 MGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIG-DEAAHGE 440
V+ QL+ + A T ++ + V LR+S ++ +G D + H E
Sbjct: 336 QLLVS--------QLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEE 387
Query: 441 EAYAI 445
AY +
Sbjct: 388 VAYTL 392
>pdb|3B9Y|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
pdb|3B9Z|A Chain A, Crystal Structure Of The Nitrosomonas Europaea Rh Protein
Complexed With Carbon Dioxide
Length = 388
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 111/294 (37%), Gaps = 21/294 (7%)
Query: 54 KKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLG 113
+ +++N M L F ++V +G+ + GT +A + L N + A
Sbjct: 10 QYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTP 69
Query: 114 KFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGW 173
+A ++Y +F A T ++ GAVLGR+ + + + + L++ Y + + +
Sbjct: 70 HSVDA-VIYAEFAVA--TGLIAMGAVLGRLRVFQYAL-LALFIVPVYLLNEWLVLDNASG 125
Query: 174 LSKLGLLDYSGGYVIH-------LSSGVAGYTAAFWVGP-RLTRDRERFPPNNIXXXXXX 225
L++ G D +G IH L +A TAA P +RF
Sbjct: 126 LTE-GFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLF 184
Query: 226 XXXXXXXXTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQG 285
F +++T +L C AT L T+ L GK S++
Sbjct: 185 WPSFATAIVPFEQMPQTIVNTLLAL-------CGAT-LATYFLSALFHKGKASIVDMANA 236
Query: 286 MITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAV 339
+ G V I IV A ++GL G+I + + K DT V
Sbjct: 237 ALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGV 290
>pdb|3B9W|A Chain A, The 1.3 A Resolution Structure Of Nitrosomonas Europaea
Rh50 And Mechanistic Implications For Nh3 Transport By
Rhesus Family Proteins
Length = 407
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 111/294 (37%), Gaps = 21/294 (7%)
Query: 54 KKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLG 113
+ +++N M L F ++V +G+ + GT +A + L N + A
Sbjct: 16 QYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTP 75
Query: 114 KFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGW 173
+A ++Y +F A T ++ GAVLGR+ + + + + L++ Y + + +
Sbjct: 76 HSVDA-VIYAEFAVA--TGLIAMGAVLGRLRVFQYAL-LALFIVPVYLLNEWLVLDNASG 131
Query: 174 LSKLGLLDYSGGYVIH-------LSSGVAGYTAAFWVGP-RLTRDRERFPPNNIXXXXXX 225
L++ G D +G IH L +A TAA P +RF
Sbjct: 132 LTE-GFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLF 190
Query: 226 XXXXXXXXTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQG 285
F +++T +L C AT L T+ L GK S++
Sbjct: 191 WPSFATAIVPFEQMPQTIVNTLLAL-------CGAT-LATYFLSALFHKGKASIVDMANA 242
Query: 286 MITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAV 339
+ G V I IV A ++GL G+I + + K DT V
Sbjct: 243 ALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGV 296
>pdb|3BHS|A Chain A, Nitrosomonas Europaea Rh50 And Mechanism Of Conduction By
Rhesus Protein Family Of Channels
Length = 406
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 110/294 (37%), Gaps = 21/294 (7%)
Query: 54 KKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLG 113
+ +++N M L F ++V +G+ + GT +A + L N + A
Sbjct: 15 QYNYSINILAMLLVGFGFLMVFVRRYGFSATTGTYLVVATGLPLYILLRANGIFGHALTP 74
Query: 114 KFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGW 173
+A ++Y +F A T ++ GAVLGR+ + + + L++ Y + + +
Sbjct: 75 HSVDA-VIYAEFAVA--TGLIAMGAVLGRLRVFQYALLA-LFIVPVYLLNEWLVLDNASG 130
Query: 174 LSKLGLLDYSGGYVIH-------LSSGVAGYTAAFWVGP-RLTRDRERFPPNNIXXXXXX 225
L++ G D +G IH L +A TAA P +RF
Sbjct: 131 LTE-GFQDSAGSIAIHAFGAYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLF 189
Query: 226 XXXXXXXXTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQG 285
F +++T +L C AT L T+ L GK S++
Sbjct: 190 WPSFATAIVPFEQMPQTIVNTLLAL-------CGAT-LATYFLSALFHKGKASIVDMANA 241
Query: 286 MITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAV 339
+ G V I IV A ++GL G+I + + K DT V
Sbjct: 242 ALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGV 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.449
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,167,022
Number of Sequences: 62578
Number of extensions: 577163
Number of successful extensions: 1457
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1375
Number of HSP's gapped (non-prelim): 24
length of query: 470
length of database: 14,973,337
effective HSP length: 102
effective length of query: 368
effective length of database: 8,590,381
effective search space: 3161260208
effective search space used: 3161260208
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)