Query 044092
Match_columns 470
No_of_seqs 131 out of 1202
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 11:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0004 AmtB Ammonia permease 100.0 1E-108 3E-113 839.7 35.5 404 22-447 1-406 (409)
2 KOG0682 Ammonia permease [Inor 100.0 2E-107 5E-112 838.9 33.8 422 14-448 20-447 (500)
3 PRK10666 ammonium transporter; 100.0 2E-103 4E-108 819.6 33.1 401 21-445 26-428 (428)
4 TIGR00836 amt ammonium transpo 100.0 7E-102 1E-106 805.3 35.2 397 27-443 1-403 (403)
5 TIGR03644 marine_trans_1 proba 100.0 4E-100 8E-105 791.1 33.9 383 25-446 3-404 (404)
6 PF00909 Ammonium_transp: Ammo 100.0 3.4E-94 7.4E-99 751.2 18.9 391 28-443 1-399 (399)
7 KOG3796 Ammonium transporter R 100.0 2.6E-47 5.6E-52 378.6 13.8 382 36-434 15-426 (442)
8 PF00909 Ammonium_transp: Ammo 79.6 14 0.0003 39.2 10.3 145 18-206 181-328 (399)
9 PF06946 Phage_holin_5: Phage 63.0 36 0.00078 28.8 6.9 72 262-335 15-92 (93)
10 PRK11624 cdsA CDP-diglyceride 61.1 32 0.0007 34.9 7.7 90 254-344 156-258 (285)
11 COG4120 ABC-type uncharacteriz 59.9 12 0.00026 37.4 4.2 46 286-335 42-87 (293)
12 TIGR03644 marine_trans_1 proba 54.9 1.5E+02 0.0032 31.7 11.7 139 21-204 199-344 (404)
13 TIGR00836 amt ammonium transpo 54.7 2E+02 0.0043 30.7 12.6 143 20-206 189-333 (403)
14 PF01148 CTP_transf_1: Cytidyl 51.1 20 0.00044 34.6 4.3 67 277-344 161-236 (259)
15 PRK10263 DNA translocase FtsK; 48.2 1.2E+02 0.0027 37.1 10.6 15 343-357 140-154 (1355)
16 PLN02594 phosphatidate cytidyl 47.3 14 0.0003 38.5 2.5 42 302-344 235-276 (342)
17 PF04657 DUF606: Protein of un 46.8 1.3E+02 0.0028 27.0 8.4 99 282-425 18-116 (138)
18 PRK10712 PTS system fructose-s 44.6 83 0.0018 35.1 8.2 104 217-338 236-344 (563)
19 PF06570 DUF1129: Protein of u 38.3 1E+02 0.0023 29.4 6.9 110 218-335 77-205 (206)
20 PF01891 CbiM: Cobalt uptake s 37.8 1.1E+02 0.0023 29.3 6.9 86 184-292 61-146 (205)
21 PRK10478 putative PTS system f 37.5 67 0.0015 33.8 5.7 103 298-419 211-336 (359)
22 PRK10666 ammonium transporter; 34.9 6E+02 0.013 27.4 12.6 140 21-205 214-356 (428)
23 PF12270 Cyt_c_ox_IV: Cytochro 31.9 1.3E+02 0.0028 27.4 5.9 47 153-208 15-63 (137)
24 PF14074 DUF4257: Protein of u 31.1 25 0.00055 29.0 1.1 58 257-314 4-74 (82)
25 TIGR01427 PTS_IIC_fructo PTS s 29.3 2.7E+02 0.0059 29.1 8.7 51 269-325 82-132 (346)
26 COG4589 Predicted CDP-diglycer 28.1 38 0.00082 33.9 1.9 67 277-344 206-278 (303)
27 PRK10457 hypothetical protein; 27.8 1.1E+02 0.0025 25.1 4.5 38 282-319 7-46 (82)
28 PLN02953 phosphatidate cytidyl 26.9 80 0.0017 33.6 4.2 85 259-344 278-374 (403)
29 PRK06433 NADH dehydrogenase su 26.0 1E+02 0.0022 25.8 3.9 31 390-420 47-77 (88)
30 COG0575 CdsA CDP-diglyceride s 25.3 75 0.0016 31.7 3.6 80 265-345 149-242 (265)
31 TIGR01594 holin_lambda phage h 25.2 89 0.0019 27.1 3.5 56 280-335 47-107 (107)
32 COG2035 Predicted membrane pro 24.9 3.2E+02 0.0069 27.8 7.8 136 189-348 86-229 (276)
33 KOG3796 Ammonium transporter R 24.1 5.9E+02 0.013 27.1 9.7 108 251-362 84-199 (442)
34 TIGR00123 cbiM cobalamin biosy 23.9 4.3E+02 0.0094 25.6 8.5 19 307-325 188-206 (214)
35 PRK10478 putative PTS system f 23.0 4.7E+02 0.01 27.6 9.0 92 217-317 21-118 (359)
36 COG5070 VRG4 Nucleotide-sugar 22.5 1.6E+02 0.0034 29.3 5.0 63 256-319 224-297 (309)
37 PF09877 DUF2104: Predicted me 20.4 1.8E+02 0.0038 25.0 4.3 56 256-311 9-72 (99)
No 1
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-108 Score=839.71 Aligned_cols=404 Identities=39% Similarity=0.721 Sum_probs=376.7
Q ss_pred ccchhhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCcccc
Q 044092 22 MNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSL 101 (470)
Q Consensus 22 ~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~~~ 101 (470)
+|+.|+.|+|+|++|| ++|||||+|+|+|++|+||+.|+++|++++++++++.|+++||+++||+ +.++|+|+...++
T Consensus 1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~-~~~~~iG~~~~~~ 78 (409)
T COG0004 1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGP-DGNGFIGNLDQFF 78 (409)
T ss_pred CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecC-CCCcccCCHHHHh
Confidence 4788999999999999 9999999999999999999999999999999999999999999999997 5678999876544
Q ss_pred cchhhhhcccC-CCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCce
Q 044092 102 GENYLLQKAFL-GKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLL 180 (470)
Q Consensus 102 ~~~~~~~~~~~-~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~ 180 (470)
..+...++... .++|+..+++||++||++|++|++|+++||+|+++|++|+++|.+++|||.+||+|+++|||.++|++
T Consensus 79 ~~~~~~~~~~~~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWvWggggwl~~~g~~ 158 (409)
T COG0004 79 LNGLGFAAVAGGAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWVWGGGGWLALLGAL 158 (409)
T ss_pred ccCccccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeEecCchHHHhcCce
Confidence 33332222211 36899999999999999999999999999999999999999999999999999999998999999999
Q ss_pred ecCCCeehhhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHH
Q 044092 181 DYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTA 260 (470)
Q Consensus 181 DfaG~~vVH~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a 260 (470)
|||||+|||..+|+.||+++++||||+++.++++||||++++++|+.|||+||||||+||++..+.++..+++||++|++
T Consensus 159 DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa 238 (409)
T COG0004 159 DFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAA 238 (409)
T ss_pred ecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCcc
Q 044092 261 TSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVL 340 (470)
Q Consensus 261 ~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~ 340 (470)
+++++|++++|+++||+|+..++||++||||+|||+|++|+||+|++||+++|++|++++++++|| +|+|||+|++
T Consensus 239 ~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~----l~~DD~ld~f 314 (409)
T COG0004 239 AGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK----LGVDDALDVF 314 (409)
T ss_pred HHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCcccce
Confidence 999999999999999999999999999999999999999999999999999999999999998886 8999999999
Q ss_pred ccccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044092 341 HTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRIL 420 (470)
Q Consensus 341 ~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~ 420 (470)
++||++|+||++++|+|++++.. ...|.+|+ +.+|++.|+.+++++.+|+++.++++++++|++
T Consensus 315 ~vHGvgGi~G~i~~GiFa~~~~~--------~~~G~~~~--------~~~~l~~Q~~~v~~~~~~~~v~t~ii~~vl~~~ 378 (409)
T COG0004 315 GVHGVGGIVGAILTGIFAAPAVG--------GGGGLFYG--------GGVQLGVQLLGVLVTIVYAFVVTFIILKVLKLI 378 (409)
T ss_pred eccchhhHHHHHHHHHhcCcccc--------ccCccccc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998641 22355552 459999999999999999999999999999999
Q ss_pred cCCCCChHHHhcc-Chhhhchhhhhccc
Q 044092 421 VPLRMSEEDMEIG-DEAAHGEEAYAIWG 447 (470)
Q Consensus 421 ~~LRv~~e~E~~G-D~~~hg~~ay~~~~ 447 (470)
.+||+|||||++| |.+||||++|++..
T Consensus 379 ~gLRvs~eeE~~GlD~~~Hge~aY~~~~ 406 (409)
T COG0004 379 IGLRVSEEEELEGLDISEHGESAYSEEE 406 (409)
T ss_pred cCCCCCHHHHhhCCChHHhccccccccc
Confidence 9999999999999 99999999998644
No 2
>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-107 Score=838.89 Aligned_cols=422 Identities=36% Similarity=0.598 Sum_probs=388.0
Q ss_pred CCCCCCccccchhhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcc
Q 044092 14 PDDASPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAF 93 (470)
Q Consensus 14 ~~~~~~~~~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~f 93 (470)
++++.++.++.+|+.|++.++++| |+|||||+|||+|+||+||++|+|+||++|.+++.+.||++||+||||++..++|
T Consensus 20 ~~~~~~~~y~~dn~~~l~sss~lv-F~M~~Gfg~L~sG~vr~Kna~nim~~nvld~a~g~l~y~~~GyslAFg~~~~n~F 98 (500)
T KOG0682|consen 20 LTKFTPNAYDLDNTAWLLSSSFLV-FTMQPGFGLLYSGLVRAKNAVNIMLKNVLDVAVGGLQYYLFGYSLAFGDSPSNGF 98 (500)
T ss_pred ccccCcchhcCCchhhHHHHHHHH-HHhcccHHHhhhccchhhhHHHHHHHHHHHHHHHHHHHHHhhheeeccCCCCCCc
Confidence 456778888889999999999999 9999999999999999999999999999999999999999999999998436899
Q ss_pred ccCCcccccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcc
Q 044092 94 WGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGW 173 (470)
Q Consensus 94 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~Gw 173 (470)
||...++...++..++...+++|++.+++||++||+++++|++|+++||+|+++|++|+++|.++||||.+||+|+++||
T Consensus 99 iG~~~~F~~~~~~g~~~~~~~~p~~~~f~FQ~~FA~~a~~i~sGa~AER~~l~~~~v~~~~~~tlVY~~~a~W~W~~~Gw 178 (500)
T KOG0682|consen 99 IGKLDFFGLRNVSGDPSSGSTIPDYSFFLFQGMFAATAATIVSGAVAERGRLKPYMVFSFFLTTLVYCPVAHWVWSPNGW 178 (500)
T ss_pred eeeccccccccCCCCcCCccchhhHHHHHHHHHHHHHHHHHhhhHHHhhhcchhHHHHHHHHHHhcccccceeeecCCce
Confidence 99987543333332333223378999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceecCCCeehhhhhHHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccch-
Q 044092 174 LSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRD---RERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDAS- 249 (470)
Q Consensus 174 L~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~g~~---~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~- 249 (470)
++++|++|||||++||++||++||++++++|||++|+ .++++|||++++.||++|||+||++||+||.+.++.+..
T Consensus 179 ~~~~gviDfAG~g~VHl~gG~agl~~a~~lGpR~~r~~~~~~~~~~hsv~~v~LGt~lLWfGWl~FN~GS~~~i~~~~~~ 258 (500)
T KOG0682|consen 179 LYKLGVIDFAGGGVVHLVGGVAGLVAALILGPRIGRFFGKAIALRPHSVTLVVLGTFLLWFGWLGFNGGSFYAINLRSWA 258 (500)
T ss_pred eeecceeeccCCceeEecccHHHHHHHHHhCCccCcccccccccCCCchhHHHHHHHHHHHHHHccCCcccccccchhHH
Confidence 9999999999999999999999999999999999973 367899999999999999999999999999999888877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 044092 250 LAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAM 329 (470)
Q Consensus 250 ~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~ 329 (470)
++++||+||++.+++||++++|+.+||+|+..+|||+|+|||||||+|++++||+|+++|+++|++|....+..++
T Consensus 259 ~a~vnT~Ls~a~gglt~~~~d~~~~~kwsv~~~cnG~laGlVaiT~gc~~v~pWaAiviG~va~~~~~~~~kL~~~---- 334 (500)
T KOG0682|consen 259 RAAVNTILSGATGGLTWLIIDYLRHGKWSVIGLCNGILAGLVAITPGCGVVEPWAAIVIGAVAGLVCNAANKLKER---- 334 (500)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcCCcchhhhHHHHHHHHHhhcCCCcccCcHHHHHHhHHHHHHHHHHHHHHHH----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988876665
Q ss_pred ccccccccCccccccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 044092 330 LQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITT 409 (470)
Q Consensus 330 ~~~IDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~ 409 (470)
+|||||+|++++||+||+||.|++|||+.+++........+..+|+++++ +++|+++|+++++++.+|++++
T Consensus 335 -lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~-------~~kqLg~Qla~i~ai~~ws~~~ 406 (500)
T KOG0682|consen 335 -LKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTIARISGLWMGH-------GFKQLGYQLAGILAIAAWSAVV 406 (500)
T ss_pred -hcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCccCCCceeecc-------hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987765544434667888875 6799999999999999999999
Q ss_pred HHHHHHHHHHHcC-CCCChHHHhcc-ChhhhchhhhhcccC
Q 044092 410 TSLICLFIRILVP-LRMSEEDMEIG-DEAAHGEEAYAIWGE 448 (470)
Q Consensus 410 ~~ii~~il~~~~~-LRv~~e~E~~G-D~~~hg~~ay~~~~~ 448 (470)
+.++++++||+.+ ||+++|||+.| |..||||.+|+....
T Consensus 407 t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~~ 447 (500)
T KOG0682|consen 407 TFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHES 447 (500)
T ss_pred HHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhhc
Confidence 9999999999999 99999999999 999999999976443
No 3
>PRK10666 ammonium transporter; Provisional
Probab=100.00 E-value=1.8e-103 Score=819.59 Aligned_cols=401 Identities=35% Similarity=0.597 Sum_probs=365.7
Q ss_pred cccchhhHHHHHHHHHHHHHhH-HHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCcc
Q 044092 21 WMNKADNAWQLTAATLVGMQSV-PGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNV 99 (470)
Q Consensus 21 ~~~~~d~~w~l~~~~lV~~~m~-~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~ 99 (470)
.+|+.|+.|+|+|++|| |+|| |||+|+|+|+||+||++|+++||++++++++++||++||+++||+ + ++|+|+..+
T Consensus 26 ~~~~~d~~w~l~~~~lV-~~M~~~Gfalle~G~vR~KN~~n~~~k~~~~~~~~~l~w~~~Gy~lafg~-~-~~~iG~~~~ 102 (428)
T PRK10666 26 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGE-G-NAFFGNFNW 102 (428)
T ss_pred ccccccHHHHHHHHHHH-HHHHHhHHHHhhccccchhHHHHHHHHHHHHHHHHHHeeeeeeHHHHhCC-C-CCcccChHH
Confidence 58889999999999999 9998 999999999999999999999999999999999999999999997 3 468887654
Q ss_pred cccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCc
Q 044092 100 SLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGL 179 (470)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~ 179 (470)
++..+...+ ...+.+|...+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||+|+ +|||.++|+
T Consensus 103 ~~~~~~~~~-~~~~~~~~~~~~~FQ~~Faa~a~tIvsGavaER~~~~~~lif~~~~~~~vY~~vahWvW~-~GwL~~lG~ 180 (428)
T PRK10666 103 LMLKNIELT-AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWG-GGLLASDGA 180 (428)
T ss_pred hhhcCCCcc-cccccchhHHHHHHHHHHHHHHHHHHHhHhhccccHHHHHHHHHHHHHHHHHHhhhheeC-chhHhhcch
Confidence 432221111 113346778899999999999999999999999999999999999999999999999995 999999999
Q ss_pred eecCCCeehhhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHH
Q 044092 180 LDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCT 259 (470)
Q Consensus 180 ~DfaG~~vVH~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~ 259 (470)
+|||||++||++||++||++++++|||+++.+++++|||++++++|+++||+||||||+||++..++++.++++||++|+
T Consensus 181 ~DfAG~~vVH~~gG~~aL~~a~~lG~R~g~~~~~~~~hn~~~~~lGt~lLw~GW~gFN~Gs~~~~~~~a~~a~~nT~la~ 260 (428)
T PRK10666 181 LDFAGGTVVHINAAVAGLVGAYLLGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGAANEIAALAFVNTVVAT 260 (428)
T ss_pred hhhcccchhHHhHHHHHHHHHHHhcccCCCCCCCCCCCCHHHHHHHHHHHHHHHHhccchhhccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999888889999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCc
Q 044092 260 ATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAV 339 (470)
Q Consensus 260 a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~ 339 (470)
++|+++|++++++.+||+|+..++||+|||||+|||+|++++||+|+++|++||++|+++.++++|| +|||||||+
T Consensus 261 a~g~l~~~~~~~~~~gk~~~~~~~nG~LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~----~~iDD~~~a 336 (428)
T PRK10666 261 AAAILGWVFGEWALRGKPSLLGACSGAIAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRW----LRVDDPCDV 336 (428)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCcCc
Confidence 9999999999999999999999999999999999999999999999999999999999998888765 899999999
Q ss_pred cccccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044092 340 LHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRI 419 (470)
Q Consensus 340 ~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~ 419 (470)
+++||+||+||++++|+|++++.. |..|.+ ++ ...+|++.|++|++++++|+++.++++++++|+
T Consensus 337 ~~vHgv~Gi~G~l~~glfa~~~~~-----------~~~~~~--g~--~~~~ql~~Ql~g~~~~~~~~~~~t~ii~~il~~ 401 (428)
T PRK10666 337 FGVHGVCGIVGCILTGIFAASSLG-----------GVGYAE--GV--TMGHQVLVQLESIAITIVWSGVVAFIGYKLADL 401 (428)
T ss_pred cHhhhHhHHHHHHHHHHhhchhcc-----------CccccC--cc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987532 111211 10 023799999999999999999999999999999
Q ss_pred HcCCCCChHHHhcc-Chhhhchhhhhc
Q 044092 420 LVPLRMSEEDMEIG-DEAAHGEEAYAI 445 (470)
Q Consensus 420 ~~~LRv~~e~E~~G-D~~~hg~~ay~~ 445 (470)
+.+||+++|||+.| |.+||||++|++
T Consensus 402 ~~~lRvs~e~E~~GlD~~~hg~~ay~~ 428 (428)
T PRK10666 402 TVGLRVPEEQEREGLDVNSHGENAYNA 428 (428)
T ss_pred cccCcCCHHHHHhCCChhHhCccccCC
Confidence 99999999999999 999999999963
No 4
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=100.00 E-value=6.7e-102 Score=805.33 Aligned_cols=397 Identities=39% Similarity=0.714 Sum_probs=363.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCC-CCCccccCCcccccchh
Q 044092 27 NAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTE-RYIAFWGAPNVSLGENY 105 (470)
Q Consensus 27 ~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~-~~~~fiG~~~~~~~~~~ 105 (470)
+.|+++|++|| |+|||||+++|+|+||+||++|+++||++++++++++||++||+++||++ +.++|+|..++++. +.
T Consensus 1 ~~w~l~~~~lV-~~M~~Gfalle~G~vr~kn~~n~l~k~~~~~~~~~i~~~~~Gy~lafg~~~~~~~~iG~~~~~~~-~~ 78 (403)
T TIGR00836 1 TAWLLIAAALV-FFMQPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGEDNPINGFIGTGGFGLK-NF 78 (403)
T ss_pred ChHHHHHHHHH-HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHhhheehHHHHhCCCCCCCCCcCchHHhhc-cC
Confidence 57999999999 99999999999999999999999999999999999999999999999973 23678998643332 21
Q ss_pred hhhc--ccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCceecC
Q 044092 106 LLQK--AFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYS 183 (470)
Q Consensus 106 ~~~~--~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~Dfa 183 (470)
..++ ...+..|..++++||++||+++++|++|+++||+|+++|++++++|++++||+++||+|+++|||+++|++|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~fq~~Fa~~t~~I~sGavaeR~~~~~~~v~~~~~~~~vY~~~ahwvW~~~GwL~~lG~~DfA 158 (403)
T TIGR00836 79 LYPGKISLAGTLPDLLFFLFQMMFAAIAATIISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFA 158 (403)
T ss_pred CcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccceeecCCchhhccCcchhc
Confidence 1111 11234778889999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCeehhhhhHHHHHHHHHHHcCCCCCC--CCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHHH
Q 044092 184 GGYVIHLSSGVAGYTAAFWVGPRLTRD--RERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTAT 261 (470)
Q Consensus 184 G~~vVH~~gG~~gL~~a~~lG~R~g~~--~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 261 (470)
||++||++||++||+++++||||++|+ ++++||||++++++|+++||+||||||+||++..++++.++++||++|+++
T Consensus 159 G~~vVH~~gG~~~L~~a~~LGpR~~r~~~~~~~~~~n~~~~~lGt~lLw~gW~gFN~Gs~~~~~~~~~~a~~nT~lA~a~ 238 (403)
T TIGR00836 159 GGGVVHIVGGVAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYAAVNTNLAAAA 238 (403)
T ss_pred CceeEecchhHHHHHHHHHhcCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 678899999999999999999999999999988888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCccc
Q 044092 262 SLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLH 341 (470)
Q Consensus 262 g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~ 341 (470)
|+++|++++++.+||+|+.+++||+|||||+|||+|++++||+|+++|+++|++|+++.+++++| +|||||||+++
T Consensus 239 g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaita~a~~v~p~~A~viG~iag~~~~~~~~~l~~~----~~iDD~~~~~~ 314 (403)
T TIGR00836 239 GGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLVAGVLCYLAVSKLKKK----LKIDDPLDAFA 314 (403)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHhhhhhhheeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----cCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999877765 89999999999
Q ss_pred cccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 044092 342 THAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILV 421 (470)
Q Consensus 342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~~ 421 (470)
+|++||+||++++|+|++++... ...|.++++ +++|++.|++|++++++|+++.++++++++||+.
T Consensus 315 vHg~~Gi~G~i~~glfa~~~~~~-------~~~g~~~~~-------~~~~l~~Ql~g~~~~~~~s~~~~~ii~~il~~~~ 380 (403)
T TIGR00836 315 VHGVGGIWGLIATGLFAAPKVGG-------VGTGGLLGG-------NGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTI 380 (403)
T ss_pred hhhhhHHHHHHHHHHhccccccc-------ccCCccccC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999876432 112444543 4599999999999999999999999999999999
Q ss_pred CCCCChHHHhcc-Chhhhchhhh
Q 044092 422 PLRMSEEDMEIG-DEAAHGEEAY 443 (470)
Q Consensus 422 ~LRv~~e~E~~G-D~~~hg~~ay 443 (470)
+||+++|||+.| |..||||++|
T Consensus 381 ~lRv~~e~E~~GlD~~~hg~~ay 403 (403)
T TIGR00836 381 GLRVSEEEEKIGLDLAEHGEFAY 403 (403)
T ss_pred cccCCHHHHHhCCChhhhCcccC
Confidence 999999999999 9999999998
No 5
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=100.00 E-value=3.8e-100 Score=791.13 Aligned_cols=383 Identities=28% Similarity=0.497 Sum_probs=347.6
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCC--CCccccCCccccc
Q 044092 25 ADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTER--YIAFWGAPNVSLG 102 (470)
Q Consensus 25 ~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~--~~~fiG~~~~~~~ 102 (470)
.|+.|+|+|++|| |+||+||+|+|+|+||+||++|+++||++++++++++||++||+++||++. .++++|.. +.
T Consensus 3 ~d~~w~l~~~~LV-~~M~~Gfalle~G~vr~Kn~~n~l~k~~~~~~~~~l~w~~~Gy~lafg~~~~~~~g~~g~f---~~ 78 (404)
T TIGR03644 3 LDTFYFLISGALV-MWMAAGFAMLEAGLVRSKNTTEILTKNIALFAIACIMYLLVGYNIMYPGGGIFLGGILGSF---LL 78 (404)
T ss_pred ccHHHHHHHHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCcchhh---hh
Confidence 5999999999999 999999999999999999999999999999999999999999999999732 23344421 11
Q ss_pred chh--hhh---c-ccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccccc
Q 044092 103 ENY--LLQ---K-AFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSK 176 (470)
Q Consensus 103 ~~~--~~~---~-~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~ 176 (470)
... ..+ + ..+..+|...+++||++||+++++|++|+++||+|+.+|++++++|++++||+++||+| ++|||.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~Fq~~Fa~~a~~IvsGavaeR~~~~~~~v~~~~~~~~vY~~~ahW~W-~~GwL~~ 157 (404)
T TIGR03644 79 GADNPVGDLIAGFEGDADYSSGSDFFFQVVFVATAMSIVSGAVAERMKLWPFLLFAVVLTGFIYPIEGSWTW-GGGWLDD 157 (404)
T ss_pred cccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHHHHHHHHHhhhhhhee-CchHHhh
Confidence 100 000 0 11224667788999999999999999999999999999999999999999999999999 5799999
Q ss_pred CCceecCCCeehhhhhHHHHHHHHHHHcCCCCCCC-----CCCCCCcHHHHHHHHHHHHHhhhhcccccccccCc-----
Q 044092 177 LGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDR-----ERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVIST----- 246 (470)
Q Consensus 177 lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~g~~~-----~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~----- 246 (470)
+|++|||||++||++||++||+++++||||++|++ +++||||++++++|+++||+||+|||+||++..+.
T Consensus 158 lG~~DfAG~~vVH~~gG~~aL~~a~~LgpR~gr~~~~~~~~~~~~~n~~~~~lG~~iLw~gW~gFN~gs~l~~~~~~~~~ 237 (404)
T TIGR03644 158 LGFSDFAGSGIVHMAGAAAALAGVLLLGPRKGKYGKNGEVNPIPGSNLPLATLGTFILWMGWFGFNGGSQLALSDVADAN 237 (404)
T ss_pred cCchhhcCceEEecchHHHHHHHHheeccCCCCCccCCCcCCCCCCCHHHHHHHHHHHHHHHHhhcchhhhhcccccchH
Confidence 99999999999999999999999999999999863 25789999999999999999999999999877653
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhh
Q 044092 247 DASLAVLNTHVCTATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKR 326 (470)
Q Consensus 247 ~~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~ 326 (470)
...++++||++|+++|+++|++++++++||+|+..++||+|||||+|||+|++++||+|++||+++|++|+++.++++|
T Consensus 238 ~~~~a~~NT~la~a~g~l~~~~~~~~~~gk~~~~~~~nG~LAGLVaITa~~~~v~p~~A~iiG~iag~v~~~~~~~~~~- 316 (404)
T TIGR03644 238 AVARIFANTNAAAAGGAIAALLLTKLLFGKADLTMVLNGALAGLVAITAEPLTPSPLAATLIGAVGGVIVVFSIVLLDK- 316 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhhhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999987765
Q ss_pred hccccccccccCccccccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHH
Q 044092 327 SAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALN 406 (470)
Q Consensus 327 ~~~~~~IDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s 406 (470)
+|||||||++++||+||+||++++|+|+.+ .|++.|++|++++++|+
T Consensus 317 ----~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~-----------------------------~~l~~Ql~g~~~~~~~~ 363 (404)
T TIGR03644 317 ----LKIDDPVGAISVHGVAGIWGTLVVPITNGD-----------------------------ASFGAQLIGAATIFAWV 363 (404)
T ss_pred ----CCCCCCcCchHhhhHHHHHHHHHHHHhccc-----------------------------hHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999521 68999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCChHHHhcc-Chhhhchhhhhcc
Q 044092 407 ITTTSLICLFIRILVPLRMSEEDMEIG-DEAAHGEEAYAIW 446 (470)
Q Consensus 407 ~~~~~ii~~il~~~~~LRv~~e~E~~G-D~~~hg~~ay~~~ 446 (470)
++.++++++++|++.+||+++|+|++| |.+||||++|||+
T Consensus 364 ~~~s~~~~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay~e~ 404 (404)
T TIGR03644 364 FVTSLIVWFILKATMGIRVSEEEEYEGLDIAECGMEAYPEF 404 (404)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHcCCCHHHhCcccCCCC
Confidence 999999999999999999999999999 9999999999873
No 6
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=100.00 E-value=3.4e-94 Score=751.24 Aligned_cols=391 Identities=40% Similarity=0.718 Sum_probs=341.1
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCC--CCccccCCcccccchh
Q 044092 28 AWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTER--YIAFWGAPNVSLGENY 105 (470)
Q Consensus 28 ~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~--~~~fiG~~~~~~~~~~ 105 (470)
+|+++|+++| ++||+||+++|+|.+|+||++|+++|++.++++++++||++||+++|++ + .++++|+.....
T Consensus 1 ~w~l~~~~lv-~~m~~G~~~l~~G~vr~kn~~~~~~~~~~~~~~~~~~~~~~Gf~lafg~-~~~~~~~~g~~~~~~---- 74 (399)
T PF00909_consen 1 AWLLLCAFLV-FLMQPGFALLEAGLVRSKNAVNILYKNLIDVAVVVMIWFLFGFSLAFGK-RYGFSGFIGNLGFSA---- 74 (399)
T ss_dssp HHHHHHHHHH-HHHCCHHHHHHHCCS-GGGHHHHHHHHHHHHHHHHHHHHHCHHHHHHST-T-HHHHHHHHHCHHH----
T ss_pred CHHHHHHHHH-HHhhccHHHhhCCCcCchHHHHHHHHHHHHHHHHHHHHHhhhhheeecC-CcccCceeecccccc----
Confidence 5999999999 9999999999999999999999999999999999999999999999998 4 456666521110
Q ss_pred hhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCce-ecCC
Q 044092 106 LLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLL-DYSG 184 (470)
Q Consensus 106 ~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~-DfaG 184 (470)
...+...+++..+++||+.||+++++|++|+++||+|+.+|++++++|+.++||+++||+|+++|||.++|++ ||+|
T Consensus 75 --~~~~~~~~~~~~~~~fq~~fa~~~~~I~sgavaeR~~~~~~ii~~~l~~~~vy~~~~~w~w~~~Gwl~~~g~~~DfaG 152 (399)
T PF00909_consen 75 --FGFQWANIPQGVFFLFQLAFAAIAATIVSGAVAERIKFSAYIIFGFLWGGLVYPPLAHWVWGENGWLAQLGFLIDFAG 152 (399)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCTHHHHHHHHHCHCHHHHHCCHH--TT-
T ss_pred --ccchhccccccchhhhhhccceEEEccccceeeceeeehHHHHHHHHHhhhhccccceEEEecchhhccCccCCCCcc
Confidence 0111223555678999999999999999999999999999999999999999999999999889999999999 9999
Q ss_pred CeehhhhhHHHHHHHHHHHcCCCCCC---CCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchh-hHHHHHHHHH
Q 044092 185 GYVIHLSSGVAGYTAAFWVGPRLTRD---RERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASL-AVLNTHVCTA 260 (470)
Q Consensus 185 ~~vVH~~gG~~gL~~a~~lG~R~g~~---~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~-a~~NT~la~a 260 (470)
|++||++||++||++++++|||++|+ ++++||||++++++|+++||+||||||+||++..++++.. +++||++|++
T Consensus 153 ~~vVH~~gG~~gL~~a~~lg~R~~~~~~~~~~~~~~s~~~~~lG~~lLw~gW~gFN~gs~~~~~~~~~~~~~~nT~la~a 232 (399)
T PF00909_consen 153 SGVVHLFGGVFGLAAAIVLGPRRGRFDGKPNPIPPHSPPLAMLGTLLLWFGWFGFNAGSALAANGRAWLRAAVNTLLAAA 232 (399)
T ss_dssp TTTTHHHHHHHHHHHHHHH--CTTTTGTTTSS--HCHHHHHHHHHHHHHHHHHHHHHCCGSSSSHHHHH-HHHHHHHHHH
T ss_pred ceeeehhhhHHHHhhheeeCCCCCcccccccCCCCCcHHHhhhhHHHHHHHhcccccccccccCCccchhhhhhhhhhHH
Confidence 99999999999999999999999997 5788999999999999999999999999999998887766 9999999999
Q ss_pred HHHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCcc
Q 044092 261 TSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVL 340 (470)
Q Consensus 261 ~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~ 340 (470)
+|+++|++++++.+||+|+.+++||+|||+|||||+|++++||+|+++|+++|.+++++++++++| +|||||||++
T Consensus 233 ~g~l~~~~~~~~~~gk~~~~~~~nG~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~----~~iDD~~~~~ 308 (399)
T PF00909_consen 233 AGGLTWLLISYLLSGKWSMVGICNGALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKR----LKIDDPVGAF 308 (399)
T ss_dssp HHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHH----HTS-HTTGHH
T ss_pred HHHHHHHHhhhccccccchhhhhhhhhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccce----eEeccccceE
Confidence 999999999999999999999999999999999999999999999999999999999999866665 8999999999
Q ss_pred ccccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044092 341 HTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRIL 420 (470)
Q Consensus 341 ~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~ 420 (470)
++||+||+||++++++|+.++... ++...+++|+ +.+|++.|+++++++..|+++.++++++++|++
T Consensus 309 ~vHg~~Gi~G~i~~glfa~~~~~~-----~~~~~~~~~~--------~~~~l~~Ql~g~~~~~~~~~~~s~i~~~~l~~~ 375 (399)
T PF00909_consen 309 AVHGVGGIWGTILTGLFASPEVNY-----SDGYGGLFYG--------NGRQLGIQLLGIVVILAWSFVVSYIIFKILKKF 375 (399)
T ss_dssp HHCHHHHHHHHHHHHHHCCCHHCS-----S-SSTTHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeccHHHHHHHHHHHhcccccc-----ccccccccCC--------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987531 1134456655 348999999999999999999999999999999
Q ss_pred cCCCCChHHHhcc-Chhhhchhhh
Q 044092 421 VPLRMSEEDMEIG-DEAAHGEEAY 443 (470)
Q Consensus 421 ~~LRv~~e~E~~G-D~~~hg~~ay 443 (470)
.+||+++|+|++| |.+||||+||
T Consensus 376 ~~LRv~~~~E~~GlD~~~hg~~aY 399 (399)
T PF00909_consen 376 GGLRVSEEDERVGLDLSEHGEEAY 399 (399)
T ss_dssp T-SB--HHHHHH-HHHHHHS--SB
T ss_pred cccCCCHHHHhhCCCHHHhCcCcC
Confidence 9999999999999 9999999998
No 7
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=2.6e-47 Score=378.59 Aligned_cols=382 Identities=22% Similarity=0.301 Sum_probs=306.4
Q ss_pred HHHHHhHHHHHhhhhcccccc----------cHHHHHHHHHHHHHHH-HHHHHhhhccccccCCCCCccccCCcccc---
Q 044092 36 LVGMQSVPGLVILYGGAVKKK----------WAVNSAFMALYAFACV-LVCWVLWGYRMSFGTERYIAFWGAPNVSL--- 101 (470)
Q Consensus 36 lV~~~m~~Gf~lle~G~vr~k----------n~~~~l~~~~~~~~i~-~i~~~~~Gy~lafg~~~~~~fiG~~~~~~--- 101 (470)
++++++|.-|++++.=+||++ +..|-+...+..++++ ++++..+||.++|-+ +++ |.....+++
T Consensus 15 l~~l~lq~~~ivLF~~fv~Yd~~al~~~t~~~~~~~~~~~Yp~fQDvhvMifiGfGFLmtflr-Ryg-fSsV~fnlllaA 92 (442)
T KOG3796|consen 15 LWALLLQAAFIVLFALFVHYDADALEWDTKRYDQKGLVASYPLFQDVHVMIFIGFGFLMTFLR-RYG-FSSVGFNLLLAA 92 (442)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccccchhhccccccceeehhhhhHHHHHHHHH-Hcc-chHHHHHHHHHH
Confidence 444778888999998888885 2345667789999998 888999999999987 542 322221211
Q ss_pred --------cchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcc
Q 044092 102 --------GENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGW 173 (470)
Q Consensus 102 --------~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~Gw 173 (470)
..++ +...+++++....+.+..+.||+.++.|..|++.+|.++.|+++++ ++++.++..+.|-+-
T Consensus 93 ~~vQWaiL~~G~-~~~~~~gk~~i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~-~fEv~~~~~~e~v~~----- 165 (442)
T KOG3796|consen 93 LGVQWAILLDGF-LSQFPGGKFVIGLESIILADFSAASVLISMGAVLGKVSPAQLLIMA-LFEVTAFGINEMVIS----- 165 (442)
T ss_pred HHHHHHHHHHHH-HHhCCCCeEEEEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHH-HHHHHHHHHHHHHHH-----
Confidence 1232 2223356766667788899999999999999999999999999996 788888888877653
Q ss_pred cccCCceecCCCeehhhhhHHHHHHHHHHHcCCCCC---CCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchh
Q 044092 174 LSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRLTR---DRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASL 250 (470)
Q Consensus 174 L~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~g~---~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~ 250 (470)
..++.-|.+||+.||.+|+++||++++++.|+..+ +++....|++.++++|+++||+.||+||+..+.. ++.+.|
T Consensus 166 -n~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~~~~~~~~gs~y~sdLfAMIGtlFLWmfWPSFNsal~~~-~~~r~r 243 (442)
T KOG3796|consen 166 -NIFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNLEGTTENEGSAYHSDLFAMIGTLFLWMFWPSFNSALARS-GDARHR 243 (442)
T ss_pred -HhccccccCCceEEEehhhhhhhhHhhhccCccccccccccCceecchHHHHHHHHHHHHhccccchhhhcC-chhhHH
Confidence 35789999999999999999999999999887655 3455678999999999999999999999965433 556799
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH--hcCCcHhhhhhhhhhcceeecCCCC-ccchHHHHHHHHhhhhHHHHHHHHHHhhh
Q 044092 251 AVLNTHVCTATSLITWLLLDRIF--FGKTSVIGAVQGMITGLVCITPAAG-IVQGWAAIIMGLCSGSIPWFTMMVVHKRS 327 (470)
Q Consensus 251 a~~NT~la~a~g~l~~~~~~~~~--~~k~~~~~~~nG~LaGlVaIta~~~-~v~p~~A~iiG~iag~i~~~~~~~l~~~~ 327 (470)
|++||++|.|+|.+|++.++... .||.|+.+++|.+|||.|||..+|+ ..+||.|++||+|||.+++.+++++.+++
T Consensus 244 Ai~NTy~slAa~tvTtf~~Sslv~~~gkldMvhIqnatLAGGVAVGTsa~~~l~P~~AmiiG~iAG~vSvlG~kyltp~l 323 (442)
T KOG3796|consen 244 AIFNTYLSLAASTVTTFAVSSLVHPQGKLDMVHIQNATLAGGVAVGTSANLILSPYGAMIIGLIAGLVSVLGYKYLTPFL 323 (442)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcccCccceEEeecchhcCceeeccchhcccCcHHHHHHHHHHHHHhhccceeechhh
Confidence 99999999999999999999886 4799999999999999999999999 89999999999999999999999999999
Q ss_pred ccccccccccCccccccchhhhhhhhhhhccccccchhhcccccccccee--ecccCCccchhHHHHHHHHHHHHHHHHH
Q 044092 328 AMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLF--YGFDMGKVATGFRQIGIQLLGILFVVAL 405 (470)
Q Consensus 328 ~~~~~IDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~--~gg~~~~~~~~~~ql~~Ql~g~~v~~~~ 405 (470)
+.++||+|+|++.+.||+||++|.++...++.-..... |+. +..-+| -++ |+.. ..-.|-..|+.|+.+++..
T Consensus 324 ~~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e~-yg~--~l~~ifp~~~g-ng~~-~~~sQa~~Ql~gl~~~l~~ 398 (442)
T KOG3796|consen 324 ERKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPES-YGK--GLYHIFPMIGG-NGHG-MATSQALYQLFGLLVTLVI 398 (442)
T ss_pred cccccccccccccccccchHHHHHHHHHHHHhhcchhh-ccc--ccccccceecC-CCcc-chhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988863211000 000 000111 111 2211 2457999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCChHHHhccC
Q 044092 406 NITTTSLICLFIRILVPLRMSEEDMEIGD 434 (470)
Q Consensus 406 s~~~~~ii~~il~~~~~LRv~~e~E~~GD 434 (470)
+.+.++++..+||. .-+|.++|+|...|
T Consensus 399 A~~gGlLtGllLkl-~~w~qp~d~~~~~D 426 (442)
T KOG3796|consen 399 ALVGGLLTGLLLKL-KIWDQPSDDEYYDD 426 (442)
T ss_pred HHHhhhhhhheeec-cccCCCChhhhccc
Confidence 99999999999994 33677777765443
No 8
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=79.57 E-value=14 Score=39.21 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=91.2
Q ss_pred CCccccchhhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHH---HHHHHHHHHHHHHHHHHhhhccccccCCCCCccc
Q 044092 18 SPGWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVN---SAFMALYAFACVLVCWVLWGYRMSFGTERYIAFW 94 (470)
Q Consensus 18 ~~~~~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~---~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fi 94 (470)
.++...+.|..+.++.+.++ ++-- .-+.+|.....|... +.+..+++.+.+.+.|.++.|-.. ++
T Consensus 181 ~~~~~~~~s~~~~~lG~~lL-w~gW---~gFN~gs~~~~~~~~~~~~~~nT~la~a~g~l~~~~~~~~~~-gk------- 248 (399)
T PF00909_consen 181 KPNPIPPHSPPLAMLGTLLL-WFGW---FGFNAGSALAANGRAWLRAAVNTLLAAAAGGLTWLLISYLLS-GK------- 248 (399)
T ss_dssp TTSS--HCHHHHHHHHHHHH-HHHH---HHHHHCCGSSSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC-SS-------
T ss_pred cccCCCCCcHHHhhhhHHHH-HHHh---cccccccccccCCccchhhhhhhhhhHHHHHHHHHHhhhccc-cc-------
Confidence 34566677788888888766 5544 445667776665554 456778888888888877755333 21
Q ss_pred cCCcccccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccc
Q 044092 95 GAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWL 174 (470)
Q Consensus 95 G~~~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL 174 (470)
+ .+..+.+...|... .+.+-+.=+++.+-++.+ ++++.++.....| ++
T Consensus 249 --------------------~--~~~~~~nG~laGlV---aita~~~~v~p~~A~~iG-~iag~i~~~~~~~------l~ 296 (399)
T PF00909_consen 249 --------------------W--SMVGICNGALAGLV---AITAGAGYVTPWGALLIG-AIAGLISYFGVSW------LL 296 (399)
T ss_dssp ------------------------HHHHHHHHHHHHH---HHTTTTTTS-HHHHHHHH-HHHHHHHHHHHHH------HH
T ss_pred --------------------c--chhhhhhhhhhhhh---heecccCCCcHHHHHHhh-hhHhhhhhhheec------cc
Confidence 0 01223333333332 234445667788877776 4555555554432 34
Q ss_pred ccCCceecCCCeehhhhhHHHHHHHHHHHcCC
Q 044092 175 SKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPR 206 (470)
Q Consensus 175 ~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R 206 (470)
.+++..|..+.-.||..+|..|..++-+...+
T Consensus 297 ~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 328 (399)
T PF00909_consen 297 KRLKIDDPVGAFAVHGVGGIWGTILTGLFASP 328 (399)
T ss_dssp HHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCC
T ss_pred ceeEeccccceEeeeeccHHHHHHHHHHHhcc
Confidence 67899999999999999999999998777544
No 9
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=63.00 E-value=36 Score=28.83 Aligned_cols=72 Identities=25% Similarity=0.141 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHH-----hcCC-cHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Q 044092 262 SLITWLLLDRIF-----FGKT-SVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDD 335 (470)
Q Consensus 262 g~l~~~~~~~~~-----~~k~-~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD 335 (470)
+.++..+++.+. ..|| ....+.-|++.|+++. .-.+-.+++..+.-|.++|+........+.||-+ |.+=||
T Consensus 15 ~ii~~~lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~-~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~-~~~e~~ 92 (93)
T PF06946_consen 15 SIITPALVQAIKKTKVVPNKWIPLISVVIGILLGAAAY-PLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSK-KYGEDD 92 (93)
T ss_pred HHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHhh-hcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhh-hcCcCC
Confidence 344444555443 2344 3456788888888773 3333447777778899999998888777777643 334454
No 10
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=61.06 E-value=32 Score=34.85 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CCcHhhhhhhhhhcceeecCCCC--------ccchHHHHHHHHhhhhHHHHHH
Q 044092 254 NTHVCTATSLITWLLLDRIFFG-----KTSVIGAVQGMITGLVCITPAAG--------IVQGWAAIIMGLCSGSIPWFTM 320 (470)
Q Consensus 254 NT~la~a~g~l~~~~~~~~~~~-----k~~~~~~~nG~LaGlVaIta~~~--------~v~p~~A~iiG~iag~i~~~~~ 320 (470)
=.++..-++=..+++..+...| |.|+....+|.++|+++.+..+. ..+++..+++|++.++...++.
T Consensus 156 ~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GD 235 (285)
T PRK11624 156 YVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGD 235 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhH
Confidence 3334444555556666665533 36888889999998876544322 1356778889999988888885
Q ss_pred HHHHhhhccccccccccCcccccc
Q 044092 321 MVVHKRSAMLQKVDDTMAVLHTHA 344 (470)
Q Consensus 321 ~~l~~~~~~~~~IDD~~~~~~vHg 344 (470)
. .+..+|++.++.|--..+|=||
T Consensus 236 L-~ES~lKR~~gVKDSG~llPGHG 258 (285)
T PRK11624 236 L-TESMFKREAGIKDSGHLIPGHG 258 (285)
T ss_pred H-HHHHHhhccCCCCCcCcCCCcC
Confidence 4 3444666799999888888776
No 11
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=59.95 E-value=12 Score=37.44 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=37.7
Q ss_pred hhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Q 044092 286 MITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDD 335 (470)
Q Consensus 286 ~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD 335 (470)
.+.|-|+.+.-..=++||-|.+++++||.+.-...-+++.| .||+|
T Consensus 42 pLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k----~kI~~ 87 (293)
T COG4120 42 PLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVK----FKILT 87 (293)
T ss_pred cchHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh----ccHHH
Confidence 35666776777777899999999999999988888888876 88877
No 12
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=54.88 E-value=1.5e+02 Score=31.69 Aligned_cols=139 Identities=14% Similarity=0.028 Sum_probs=84.2
Q ss_pred cccchhhHHHHHHHHHHHHHhHHHHHhhhhccc------cc-ccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcc
Q 044092 21 WMNKADNAWQLTAATLVGMQSVPGLVILYGGAV------KK-KWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAF 93 (470)
Q Consensus 21 ~~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~v------r~-kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~f 93 (470)
.+.+.|..+.++.+.++ ++--+|| .+|+. ++ +.+..+.+...+..+.+.+.|.++-|.. +++.+
T Consensus 199 ~~~~~n~~~~~lG~~iL-w~gW~gF---N~gs~l~~~~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~~-~gk~~---- 269 (404)
T TIGR03644 199 PIPGSNLPLATLGTFIL-WMGWFGF---NGGSQLALSDVADANAVARIFANTNAAAAGGAIAALLLTKLL-FGKAD---- 269 (404)
T ss_pred CCCCCCHHHHHHHHHHH-HHHHHhh---cchhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----
Confidence 45566777888888766 6655555 34432 11 2234567777888888899998775532 22200
Q ss_pred ccCCcccccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcc
Q 044092 94 WGAPNVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGW 173 (470)
Q Consensus 94 iG~~~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~Gw 173 (470)
...+.+..-|.. ++| -+-+.=.++.+-+++. +++++++..... +
T Consensus 270 -------------------------~~~~~nG~LAGL-VaI--Ta~~~~v~p~~A~iiG-~iag~v~~~~~~-------~ 313 (404)
T TIGR03644 270 -------------------------LTMVLNGALAGL-VAI--TAEPLTPSPLAATLIG-AVGGVIVVFSIV-------L 313 (404)
T ss_pred -------------------------HHHHHHHHHhhh-hhh--ccccCCCCHHHHHHHH-HHHHHHHHHHHH-------H
Confidence 011112222221 112 2223556677767776 455555654433 4
Q ss_pred cccCCceecCCCeehhhhhHHHHHHHHHHHc
Q 044092 174 LSKLGLLDYSGGYVIHLSSGVAGYTAAFWVG 204 (470)
Q Consensus 174 L~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG 204 (470)
+.++++-|--+.-.||..+|..|..++=+..
T Consensus 314 ~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~ 344 (404)
T TIGR03644 314 LDKLKIDDPVGAISVHGVAGIWGTLVVPITN 344 (404)
T ss_pred HHhCCCCCCcCchHhhhHHHHHHHHHHHHhc
Confidence 6788999999999999999999988876663
No 13
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=54.67 E-value=2e+02 Score=30.73 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=83.0
Q ss_pred ccccchhhHHHHHHHHHHHHHhHHHHHhhhhcccccc--cHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCC
Q 044092 20 GWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKK--WAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAP 97 (470)
Q Consensus 20 ~~~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~k--n~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~ 97 (470)
+...+.|..+.++.+.++ ++- ..-+.+|+.... .+.++.+..++..+.+.+.|.++-|-. .++.+. .
T Consensus 189 ~~~~~~n~~~~~lGt~lL-w~g---W~gFN~Gs~~~~~~~~~~a~~nT~lA~a~g~l~~~~~~~~~-~gk~~~---~--- 257 (403)
T TIGR00836 189 VAIRPHNVPLVVLGTFIL-WFG---WFGFNAGSALAANGTAAYAAVNTNLAAAAGGLTWLLIDWLK-HGKPTL---L--- 257 (403)
T ss_pred CCCCCCCHHHHHHHHHHH-HHH---HhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCH---H---
Confidence 345556777888877666 554 444556655433 344577788888888899998775532 222110 0
Q ss_pred cccccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccC
Q 044092 98 NVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKL 177 (470)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~l 177 (470)
.+.+. +.+-.....+-++=.++.+-++..+ ++++++....++ ...++
T Consensus 258 -----------------------~~~nG---~LAGLVaita~a~~v~p~~A~viG~-iag~~~~~~~~~------l~~~~ 304 (403)
T TIGR00836 258 -----------------------GACNG---ILAGLVAITPGCGVVTPWGAIIIGL-VAGVLCYLAVSK------LKKKL 304 (403)
T ss_pred -----------------------HHHhh---hhhhheeecCCCCCCCHHHHHHHHH-HHHHHHHHHHHH------HHHHc
Confidence 00011 1111111222224455666666653 344444333221 22468
Q ss_pred CceecCCCeehhhhhHHHHHHHHHHHcCC
Q 044092 178 GLLDYSGGYVIHLSSGVAGYTAAFWVGPR 206 (470)
Q Consensus 178 G~~DfaG~~vVH~~gG~~gL~~a~~lG~R 206 (470)
+..|.-+.-.||..+|..|..+.-++.+.
T Consensus 305 ~iDD~~~~~~vHg~~Gi~G~i~~glfa~~ 333 (403)
T TIGR00836 305 KIDDPLDAFAVHGVGGIWGLIATGLFAAP 333 (403)
T ss_pred CCCCCcccchhhhhhHHHHHHHHHHhccc
Confidence 99999999999999999999988777643
No 14
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=51.15 E-value=20 Score=34.57 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=48.7
Q ss_pred CcHhhhhhhhhhcceeecCCCCc---------cchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCcccccc
Q 044092 277 TSVIGAVQGMITGLVCITPAAGI---------VQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHA 344 (470)
Q Consensus 277 ~~~~~~~nG~LaGlVaIta~~~~---------v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~vHg 344 (470)
.++.....|.++|.++....+-. .+++.+++++++++++..++... +..+|+..+|-|--+.+|=||
T Consensus 161 ~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gdl~-~S~~KR~~~iKD~g~lipghG 236 (259)
T PF01148_consen 161 ISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGDLF-ESAIKRDAGIKDSGNLIPGHG 236 (259)
T ss_pred CCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcccccccccCcC
Confidence 45666777777777665444331 57899999999999998887543 333555699999988888776
No 15
>PRK10263 DNA translocase FtsK; Provisional
Probab=48.16 E-value=1.2e+02 Score=37.10 Aligned_cols=15 Identities=33% Similarity=0.614 Sum_probs=11.6
Q ss_pred ccchhhhhhhhhhhc
Q 044092 343 HAVAGSLGGLLTGVF 357 (470)
Q Consensus 343 Hg~~Gi~G~i~~glf 357 (470)
+..+|++|.++..++
T Consensus 140 ~~gGGIIG~lLs~lL 154 (1355)
T PRK10263 140 FASGGVIGSLLSTTL 154 (1355)
T ss_pred ccccchHHHHHHHHH
Confidence 467999999887754
No 16
>PLN02594 phosphatidate cytidylyltransferase
Probab=47.27 E-value=14 Score=38.47 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=34.4
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCcccccc
Q 044092 302 GWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHA 344 (470)
Q Consensus 302 p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~vHg 344 (470)
.+.++++|++++++..++-.+-+ .+|+..||-|--+.+|=||
T Consensus 235 ~~h~l~l~l~aSl~a~fGdlfaS-~~KR~~~IKDfG~~IPGHG 276 (342)
T PLN02594 235 QWHALSLGLFASIIAPFGGFFAS-GFKRAFKIKDFGDSIPGHG 276 (342)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHH-HHHHccCCCcccCccCCCc
Confidence 57899999999999998854433 3566699999999999887
No 17
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=46.82 E-value=1.3e+02 Score=27.03 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=62.5
Q ss_pred hhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCccccccchhhhhhhhhhhccccc
Q 044092 282 AVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPK 361 (470)
Q Consensus 282 ~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~vHg~~Gi~G~i~~glfa~~~ 361 (470)
..|+-++.-+. +|+.|-.+-...|.+.......+.++ .+....-++=..+-.+|+.|.+.+..
T Consensus 18 ~~N~~L~~~~g--------s~~~as~i~~~~G~i~~~i~~~~~~~----~~~~~~~~~p~w~~lGG~lG~~~V~~----- 80 (138)
T PF04657_consen 18 AFNGQLGKALG--------SPLVASFISFGVGFILLLIILLITGR----PSLASLSSVPWWAYLGGLLGVFFVLS----- 80 (138)
T ss_pred HHHHHHHHHhC--------ccHHHHHHHHHHHHHHHHHHHHHhcc----cccchhccCChHHhccHHHHHHHHHH-----
Confidence 45665555422 37777777777777666555555543 13333334455667788888776542
Q ss_pred cchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 044092 362 LNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRM 425 (470)
Q Consensus 362 ~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~~~LRv 425 (470)
.-..++-+|...........=.+...++|++..+..
T Consensus 81 ----------------------------~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~ 116 (138)
T PF04657_consen 81 ----------------------------NIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGA 116 (138)
T ss_pred ----------------------------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 223457778888888888888888888998755533
No 18
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=44.64 E-value=83 Score=35.10 Aligned_cols=104 Identities=19% Similarity=0.384 Sum_probs=54.0
Q ss_pred CcHHHHHHHHHHHHHhhh-hcccccccccCccchhhHHHHH-HHHHHHHHHHHHHHHH---HhcCCcHhhhhhhhhhcce
Q 044092 217 NNILLMLAGAGLLWMGWT-GFNGGDPYVISTDASLAVLNTH-VCTATSLITWLLLDRI---FFGKTSVIGAVQGMITGLV 291 (470)
Q Consensus 217 ~s~~~~~lG~~lLw~GW~-gFN~gs~~~~~~~~~~a~~NT~-la~a~g~l~~~~~~~~---~~~k~~~~~~~nG~LaGlV 291 (470)
|=+|+++.|.+++=++.. +.+. .. +...-...++++ =..+.+...-.+..|+ .-+|+ .++-|.++|++
T Consensus 236 ~mlP~vv~gGil~ai~~~~g~~~---~~-~~~~~~~~~~~~gg~~~~~lmvpvla~yia~sia~rp---glapg~i~g~~ 308 (563)
T PRK10712 236 YMLPMVVAGGLCIALSFAFGIEA---FK-EPGTLAAALMQIGGGSAFALMVPVLAGYIAFSIADRP---GLTPGLIGGML 308 (563)
T ss_pred HHHHHHHHhHHHHHHHHHhCccc---cC-CccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCc---cchHHHHHHHH
Confidence 446888899988887643 2111 11 111111223322 1123333333333333 34565 56889999999
Q ss_pred eecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccC
Q 044092 292 CITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMA 338 (470)
Q Consensus 292 aIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~ 338 (470)
|...+++++ ++++.|.++|-+. ++++|+ .|+-+.++
T Consensus 309 a~~~~~GFl---G~Ilag~lagyv~----~~l~K~----~~lP~~l~ 344 (563)
T PRK10712 309 AVSTGSGFI---GGIIAGFLAGYVA----KLISTK----LKLPQSME 344 (563)
T ss_pred HhcCCchHH---HHHHHHHHHHHHH----HHHHHh----ccCcHHHH
Confidence 887765553 5666666665444 334432 45666555
No 19
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.33 E-value=1e+02 Score=29.37 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=53.1
Q ss_pred cHHHHHHHHHHHHHhhhhccccccc--ccCccchhhHHHHHHHHHHHHHHHHHHH-HHHh-----cCCcHhh-hh-----
Q 044092 218 NILLMLAGAGLLWMGWTGFNGGDPY--VISTDASLAVLNTHVCTATSLITWLLLD-RIFF-----GKTSVIG-AV----- 283 (470)
Q Consensus 218 s~~~~~lG~~lLw~GW~gFN~gs~~--~~~~~~~~a~~NT~la~a~g~l~~~~~~-~~~~-----~k~~~~~-~~----- 283 (470)
+....++-..+++++.+++-.|... +.+......++++++.+..+++....+. ++.. +|..... +.
T Consensus 77 ~~~~~~ld~~L~~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~ 156 (206)
T PF06570_consen 77 NPWLMALDNSLLFFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLA 156 (206)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHH
Confidence 4455666677777777766655332 1112222255666655555555444444 4332 2222111 11
Q ss_pred hhhhhcce---eecC-C-CCccchHHHHHHHHhhhhHHHHHHHHHHhhhcccccccc
Q 044092 284 QGMITGLV---CITP-A-AGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDD 335 (470)
Q Consensus 284 nG~LaGlV---aIta-~-~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD 335 (470)
-...-+++ +.-| . -..++||.-+++|+++-.+. ++++|| ++|-+
T Consensus 157 ~~~w~~~~~~~~~lp~~inp~l~~~~~iiig~i~~~~~----~~lkkk----~~i~~ 205 (206)
T PF06570_consen 157 MVLWIVIFVLTSFLPPVINPVLPPWVYIIIGVIAFALR----FYLKKK----YNITG 205 (206)
T ss_pred HHHHHHHHHHHHHccccCCcCCCHHHHHHHHHHHHHHH----HHHHHH----hCCCC
Confidence 11111111 1112 1 12778888888886655544 466665 66643
No 20
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=37.80 E-value=1.1e+02 Score=29.25 Aligned_cols=86 Identities=24% Similarity=0.251 Sum_probs=44.6
Q ss_pred CCeehhhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHHHHH
Q 044092 184 GGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSL 263 (470)
Q Consensus 184 G~~vVH~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~ 263 (470)
++..+|..|.. ..++++||+.. .......+-+...-|..|. -..--+|++..+....
T Consensus 61 ~g~s~Hllg~~---l~~l~lGp~~a-------------~~~~~~vll~qal~fg~gg-------~~~lG~N~l~m~~~~~ 117 (205)
T PF01891_consen 61 GGLSVHLLGLT---LLTLMLGPWLA-------------ALAMAIVLLLQALLFGDGG-------WTALGANALNMGVPPV 117 (205)
T ss_pred CCchHHHhHHH---HHHHHHhHHHH-------------HHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHHHHH
Confidence 66999999876 56778898732 3334444433333333221 1223367775555555
Q ss_pred HHHHHHHHHHhcCCcHhhhhhhhhhccee
Q 044092 264 ITWLLLDRIFFGKTSVIGAVQGMITGLVC 292 (470)
Q Consensus 264 l~~~~~~~~~~~k~~~~~~~nG~LaGlVa 292 (470)
+.+..+.+..++|.......++.++|.++
T Consensus 118 ~~~~~~~~~l~~~~~~~~~~~~F~ag~l~ 146 (205)
T PF01891_consen 118 LVSYLLFRLLRRKFPRNIFVAGFLAGFLS 146 (205)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 54444444444442233345666655443
No 21
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=37.45 E-value=67 Score=33.79 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=61.4
Q ss_pred CccchHHHHHHHHhhhhHHHHHHHHHHhhhcc-c----------------------cccccccCccccccchhhhhhhhh
Q 044092 298 GIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAM-L----------------------QKVDDTMAVLHTHAVAGSLGGLLT 354 (470)
Q Consensus 298 ~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~-~----------------------~~IDD~~~~~~vHg~~Gi~G~i~~ 354 (470)
+.+.|..|..++..-..+-......+.||..+ + +.+.||..+++...++|..|....
T Consensus 211 g~~~~~~a~~~a~mvPPlg~~lat~l~kk~f~k~er~~a~sA~isgl~GITEpAIPFgv~~p~r~i~a~~iGsaVgGal~ 290 (359)
T PRK10478 211 GVYTVVAIAAVAICVPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVIPSIMVGSVCGAVTA 290 (359)
T ss_pred CCchHHHHHHHHhccchHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhcCccchHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 46777777666655555444334445444211 1 445888889999999999999999
Q ss_pred hhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044092 355 GVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRI 419 (470)
Q Consensus 355 glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~ 419 (470)
++|....... ..|++ . +-. ..+.+..++.+.-+++++.++..++|+
T Consensus 291 ~~~gv~~~ap--------~gGi~-~---------ip~-~~~~l~~iiailig~vvtavl~~~~k~ 336 (359)
T PRK10478 291 ALFGAQCYAG--------WGGLI-V---------LPV-VDGKLGYIAAVAVGAVVTAVCVNVLKS 336 (359)
T ss_pred HHhCCccccc--------cchHH-H---------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9987654321 12322 0 111 124455555556666666677777765
No 22
>PRK10666 ammonium transporter; Provisional
Probab=34.87 E-value=6e+02 Score=27.41 Aligned_cols=140 Identities=13% Similarity=0.078 Sum_probs=77.9
Q ss_pred cccchhhHHHHHHHHHHHHHhHHHHHhhhhccccccc--HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCc
Q 044092 21 WMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKW--AVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPN 98 (470)
Q Consensus 21 ~~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn--~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~ 98 (470)
..++-|....++.+.++ ++ |..-+.+|+....| +..+.+..++..+.+.+.|.++-|- -.++.+ ..
T Consensus 214 ~~~~hn~~~~~lGt~lL-w~---GW~gFN~Gs~~~~~~~a~~a~~nT~la~a~g~l~~~~~~~~-~~gk~~---~~---- 281 (428)
T PRK10666 214 AFKPHNLPMVFTGTAIL-YI---GWFGFNAGSAGAANEIAALAFVNTVVATAAAILGWVFGEWA-LRGKPS---LL---- 281 (428)
T ss_pred CCCCCCHHHHHHHHHHH-HH---HHHhccchhhccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCC---HH----
Confidence 34455555666666554 44 55556677765444 3456667777787778888765432 112100 00
Q ss_pred ccccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccc-cC
Q 044092 99 VSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLS-KL 177 (470)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~-~l 177 (470)
.+.+.. .+-.....+-++=.++..-++.. ++.++++....+ ++. ++
T Consensus 282 ----------------------~~~nG~---LaGLVaITa~a~~v~p~~A~iiG-~vag~v~~~~~~-------~l~~~~ 328 (428)
T PRK10666 282 ----------------------GACSGA---IAGLVGVTPACGYVGVGGALIIG-VVAGLAGLWGVT-------MLKRWL 328 (428)
T ss_pred ----------------------HHHHHH---hhhhhhcccccccCCHHHHHHHH-HHHHHHHHHHHH-------HHHhcC
Confidence 001111 11111112223455566666665 344455443222 233 47
Q ss_pred CceecCCCeehhhhhHHHHHHHHHHHcC
Q 044092 178 GLLDYSGGYVIHLSSGVAGYTAAFWVGP 205 (470)
Q Consensus 178 G~~DfaG~~vVH~~gG~~gL~~a~~lG~ 205 (470)
+..|--+...||..+|..|..+.-+...
T Consensus 329 ~iDD~~~a~~vHgv~Gi~G~l~~glfa~ 356 (428)
T PRK10666 329 RVDDPCDVFGVHGVCGIVGCILTGIFAA 356 (428)
T ss_pred CCCCCcCccHhhhHhHHHHHHHHHHhhc
Confidence 8999999999999999999988766653
No 23
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=31.89 E-value=1.3e+02 Score=27.36 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHHHHhhhcceeeeeEcCCcccccCCceecCCCeehhhhhHHHHHHHHHH--HcCCCC
Q 044092 153 PLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFW--VGPRLT 208 (470)
Q Consensus 153 ~l~~~~vYp~~~hwvW~~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~--lG~R~g 208 (470)
++...++|-...+|.= + + .|-+|....-+.++.+.+++.++ ..+|.+
T Consensus 15 f~~~~~vY~~~t~~~~-~-------~-~E~~Gt~aL~ls~~l~~mig~yl~~~~rr~~ 63 (137)
T PF12270_consen 15 FLVVAVVYGFWTKWSG-D-------G-GEWVGTVALVLSGGLALMIGFYLRFTARRIG 63 (137)
T ss_pred HHHHHHHHHHHHhccC-C-------C-CCcchHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3455667776655532 1 1 29999999999999888877655 355554
No 24
>PF14074 DUF4257: Protein of unknown function (DUF4257)
Probab=31.08 E-value=25 Score=29.05 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC-------------cHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhh
Q 044092 257 VCTATSLITWLLLDRIFFGKT-------------SVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGS 314 (470)
Q Consensus 257 la~a~g~l~~~~~~~~~~~k~-------------~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~ 314 (470)
+|...|+++.++-++..+||. -..++.-|++|++.++|...+.-+-+.-+.+.++||.
T Consensus 4 iA~liGgi~G~i~H~~~~g~i~~Pr~~k~~~~lGF~~d~~vG~~AaiL~v~~~~~~~~~~~iv~vSilaG~ 74 (82)
T PF14074_consen 4 IAGLIGGIMGLIGHYRKNGVIKKPRRTKQFFYLGFLEDMFVGSLAAILAVTVSSDPESLRVIVKVSILAGI 74 (82)
T ss_pred EeeeHhhHHHHHHHHhcCCEEecCccccceEEecHHHHHHHHHHHHHHhheeccCchhhhhhhhhhhhhhc
Confidence 355677888888775444431 2346788899999998888888777877777777775
No 25
>TIGR01427 PTS_IIC_fructo PTS system, fructose subfamily, IIC component. This model represents the IIC component, or IIC region of a IIABC or IIBC polypeptide of a phosphotransferase system for carbohydrate transport. Members of this family belong to the fructose-specific subfamily of the broader family (pfam02378) of PTS IIC proteins. Members should be found as part of the same chain or in the same operon as fructose family IIA (TIGR00848) and IIB (TIGR00829) protein regions. A number of bacterial species have members in two different branches of this subfamily, suggesting some diversity in substrate specificity of its members.
Probab=29.28 E-value=2.7e+02 Score=29.05 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=33.8
Q ss_pred HHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHh
Q 044092 269 LDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHK 325 (470)
Q Consensus 269 ~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~ 325 (470)
+.|-..+|+-. .-|.+.|+++....+++ .++++.|++++.+.....|+++|
T Consensus 82 Ia~Sia~k~g~---~pG~i~G~~~~~~~~Gf---lGgII~gilag~~~~~lek~ikK 132 (346)
T TIGR01427 82 IAYSIADRPGL---APGMIAGLIANNFNSGF---LGGIIAGFLAGYVVKGLQKYIKK 132 (346)
T ss_pred HHHHHccCcCC---cHHHHHHHHHHccccch---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444577643 44999999998766664 47777777777666555555554
No 26
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=28.06 E-value=38 Score=33.87 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=38.2
Q ss_pred CcHhhhhhhhhhcceeecCCCC------ccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCcccccc
Q 044092 277 TSVIGAVQGMITGLVCITPAAG------IVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHA 344 (470)
Q Consensus 277 ~~~~~~~nG~LaGlVaIta~~~------~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~vHg 344 (470)
.|+....+|.+.|....+..+. -.+|++|++.|++=++.-.++-.+++. +|.+.++.|--.-++=||
T Consensus 206 vSPnKTveGl~GGilt~~~~~~~l~~lTp~~~lqa~~~~~~I~l~GF~GdlvmSa-iKRd~gvKD~G~li~GHG 278 (303)
T COG4589 206 VSPNKTVEGLIGGILTTMIASAILGLLTPLNTLQALLAGLLIGLSGFCGDLVMSA-IKRDVGVKDSGKLLPGHG 278 (303)
T ss_pred cCCcchHHHHhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhhhHHHHHH-HHhhcCCCcccccCCCCc
Confidence 4555666666666554443332 234566666665554444444333332 334589999888877776
No 27
>PRK10457 hypothetical protein; Provisional
Probab=27.80 E-value=1.1e+02 Score=25.14 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=23.2
Q ss_pred hhhhhhhccee--ecCCCCccchHHHHHHHHhhhhHHHHH
Q 044092 282 AVQGMITGLVC--ITPAAGIVQGWAAIIMGLCSGSIPWFT 319 (470)
Q Consensus 282 ~~nG~LaGlVa--Ita~~~~v~p~~A~iiG~iag~i~~~~ 319 (470)
+.-|.++|.+| +.++-+-...+..+++|++++++-.+.
T Consensus 7 iiiG~iaG~lA~~i~pg~~~~G~~~tiilGiiGA~iGg~l 46 (82)
T PRK10457 7 IIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGGWI 46 (82)
T ss_pred HHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 34455555555 455555556677777777777765433
No 28
>PLN02953 phosphatidate cytidylyltransferase
Probab=26.89 E-value=80 Score=33.63 Aligned_cols=85 Identities=15% Similarity=0.052 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhc----CCcHhhhhhhhhhcceeecCCC--------CccchHHHHHHHHhhhhHHHHHHHHHHhh
Q 044092 259 TATSLITWLLLDRIFFG----KTSVIGAVQGMITGLVCITPAA--------GIVQGWAAIIMGLCSGSIPWFTMMVVHKR 326 (470)
Q Consensus 259 ~a~g~l~~~~~~~~~~~----k~~~~~~~nG~LaGlVaIta~~--------~~v~p~~A~iiG~iag~i~~~~~~~l~~~ 326 (470)
.-++=+.+++..+...| +.|+.....|.++|+++....+ -...++.++++|++.++...++.. .+..
T Consensus 278 vw~~Di~AY~~G~~fGk~kl~~ISPkKTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~~~~~GDL-~eS~ 356 (403)
T PLN02953 278 VIATDTFAFLGGKAFGRTPLTSISPKKTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFFGSVFGDL-TESM 356 (403)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCCCCeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhHH-HHHH
Confidence 33445555666555433 2466566666655544322111 124566778999998888887754 3333
Q ss_pred hccccccccccCcccccc
Q 044092 327 SAMLQKVDDTMAVLHTHA 344 (470)
Q Consensus 327 ~~~~~~IDD~~~~~~vHg 344 (470)
+|...+|.|--..+|=||
T Consensus 357 iKR~~gVKDsG~liPGHG 374 (403)
T PLN02953 357 IKRDAGVKDSGSLIPGHG 374 (403)
T ss_pred HhHccCCCCccccCCCCC
Confidence 555699999877777775
No 29
>PRK06433 NADH dehydrogenase subunit J; Provisional
Probab=26.03 E-value=1e+02 Score=25.79 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044092 390 RQIGIQLLGILFVVALNITTTSLICLFIRIL 420 (470)
Q Consensus 390 ~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~ 420 (470)
..+..+.+++.-+++++..++.++.+.+..+
T Consensus 47 ~lL~a~fvA~~qi~VYaGai~vLflF~iml~ 77 (88)
T PRK06433 47 VMLNAEFLAAVQVLVYVGAVLILITFAVMLT 77 (88)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5667889999999999999998888888864
No 30
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=25.34 E-value=75 Score=31.68 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=54.6
Q ss_pred HHHHHHHHHhc-----CCcHhhhhhhhhhcceeecCCCCc---------cchHHHHHHHHhhhhHHHHHHHHHHhhhccc
Q 044092 265 TWLLLDRIFFG-----KTSVIGAVQGMITGLVCITPAAGI---------VQGWAAIIMGLCSGSIPWFTMMVVHKRSAML 330 (470)
Q Consensus 265 ~~~~~~~~~~~-----k~~~~~~~nG~LaGlVaIta~~~~---------v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~ 330 (470)
.+.+..+...| |.|+.....|.+.|.+..+..+-. .+++..++++++.+++..++-. .+..+|++
T Consensus 149 ~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGDL-~eS~iKR~ 227 (265)
T COG0575 149 GAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGDL-FESYIKRL 227 (265)
T ss_pred hHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHc
Confidence 34555555433 368888888888887665544432 2357788999999999887743 33334556
Q ss_pred cccccccCccccccc
Q 044092 331 QKVDDTMAVLHTHAV 345 (470)
Q Consensus 331 ~~IDD~~~~~~vHg~ 345 (470)
+|+-|--..+|=||.
T Consensus 228 ~gvKDsg~liPGHGG 242 (265)
T COG0575 228 LGIKDSGWLIPGHGG 242 (265)
T ss_pred cCCCCcCCCCCCcCc
Confidence 999998888887763
No 31
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=25.16 E-value=89 Score=27.08 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=26.9
Q ss_pred hhhhhhhhhcceeecCCC--C--ccchHHHHHHHHhhhhHHHHH-HHHHHhhhcccccccc
Q 044092 280 IGAVQGMITGLVCITPAA--G--IVQGWAAIIMGLCSGSIPWFT-MMVVHKRSAMLQKVDD 335 (470)
Q Consensus 280 ~~~~nG~LaGlVaIta~~--~--~v~p~~A~iiG~iag~i~~~~-~~~l~~~~~~~~~IDD 335 (470)
..+..+.++|+++.+... . -+++.-+.++|..=|.+=+=- -.++.|.+++|.+.||
T Consensus 47 ~~llea~mCg~la~~~~~~l~~~g~~~~~a~~~g~~IGflGvd~ir~~~~~~i~kK~g~~~ 107 (107)
T TIGR01594 47 RKLIDALMCAAIALVAASALDFLGLPTSLSPFLGGMIGFVGVDKIREFAKRFINKKAGVDD 107 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhheeeccHHHHHHHHHHHHHhhcCCCC
Confidence 346788888877644333 2 333444444444444431111 1223344444577666
No 32
>COG2035 Predicted membrane protein [Function unknown]
Probab=24.94 E-value=3.2e+02 Score=27.77 Aligned_cols=136 Identities=10% Similarity=-0.002 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHHHHHHHHHH
Q 044092 189 HLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLL 268 (470)
Q Consensus 189 H~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~ 268 (470)
-+..-++||...-+.-.++..+.++..+.+.....+.++++...-..+|...... ....-.+++.+|++-++.+ ++
T Consensus 86 ~t~~fF~GlI~~sVp~llk~i~~~s~~~~~~l~~li~gfii~~~~~~~~~~~~~~---~~~~~~i~~~~aGavAa~A-Mi 161 (276)
T COG2035 86 PTLAFFAGLILGSVPSLLKEINYKSVKTVNRLFALILGFIILGLILYLNNIQTAS---ITTGYLILLFIAGAVAACA-MI 161 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHHHHHHHHHhcccccccc---cccchHHHHHHHHHHHHHH-Hh
Confidence 3444556677655543333322222224455666666677766666666643322 2344567777766543322 11
Q ss_pred -------HHHHHhcCCcHh-hhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCcc
Q 044092 269 -------LDRIFFGKTSVI-GAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVL 340 (470)
Q Consensus 269 -------~~~~~~~k~~~~-~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~ 340 (470)
.-.+.-|.+.+. ...+ +.....+...+.+|+.+|++.. .|.++..+++ . ...
T Consensus 162 lPGiSGS~lLLllG~Y~~vl~~ls-----------s~~~l~~l~~f~~G~~~Gll~f--skvi~y~L~~-h------~~~ 221 (276)
T COG2035 162 LPGISGSFLLLLLGVYAPVLSALS-----------SFFILGTLLPFAIGAGAGLLTF--SKVISYLLRN-H------REI 221 (276)
T ss_pred CCCCcHHHHHHHHhhHHHHHHHHH-----------hhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-h------HHH
Confidence 111234555443 2222 4556778889999999999863 4555543221 2 255
Q ss_pred ccccchhh
Q 044092 341 HTHAVAGS 348 (470)
Q Consensus 341 ~vHg~~Gi 348 (470)
..|.++|+
T Consensus 222 t~~fi~Gl 229 (276)
T COG2035 222 TYAFIIGL 229 (276)
T ss_pred HHHHHHHH
Confidence 67777775
No 33
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=24.11 E-value=5.9e+02 Score=27.12 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=69.1
Q ss_pred hHHHHHHHHHH---HHHHHHHHHHHHhcCCc--Hhhhh---hhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHH
Q 044092 251 AVLNTHVCTAT---SLITWLLLDRIFFGKTS--VIGAV---QGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMV 322 (470)
Q Consensus 251 a~~NT~la~a~---g~l~~~~~~~~~~~k~~--~~~~~---nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~ 322 (470)
+-+|.++++.+ +.+.==+++.+..+|++ +..+. -.+.+=|++..+.-+-++|-+-++.-++=-.+...--..
T Consensus 84 V~fnlllaA~~vQWaiL~~G~~~~~~~gk~~i~le~ii~Ad~saa~vLIS~gAvLGk~sp~QlliM~~fEv~~~~~~e~v 163 (442)
T KOG3796|consen 84 VGFNLLLAALGVQWAILLDGFLSQFPGGKFVIGLESIILADFSAASVLISMGAVLGKVSPAQLLIMALFEVTAFGINEMV 163 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeHHHhhhhHhHhHHhhhhchhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45677776654 11111112222235642 22333 344555777788888999999888877765554433333
Q ss_pred HHhhhccccccccccCccccccchhhhhhhhhhhcccccc
Q 044092 323 VHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKL 362 (470)
Q Consensus 323 l~~~~~~~~~IDD~~~~~~vHg~~Gi~G~i~~glfa~~~~ 362 (470)
+.+ .+++||.-+...+|-++.-.|.-.+-.+-.+..
T Consensus 164 ~~n----~~~v~d~g~smtih~FgAYFGLavA~~l~k~~~ 199 (442)
T KOG3796|consen 164 ISN----IFNVNDHGGSMTIHAFGAYFGLAVAWCLYKPNL 199 (442)
T ss_pred HHH----hccccccCCceEEEehhhhhhhhHhhhccCccc
Confidence 333 389999999999999999999988887765543
No 34
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=23.87 E-value=4.3e+02 Score=25.56 Aligned_cols=19 Identities=11% Similarity=0.207 Sum_probs=16.3
Q ss_pred HHHHhhhhHHHHHHHHHHh
Q 044092 307 IMGLCSGSIPWFTMMVVHK 325 (470)
Q Consensus 307 iiG~iag~i~~~~~~~l~~ 325 (470)
.+|++=|++..+...+++|
T Consensus 188 ~~~i~Eg~iT~~~~~~l~~ 206 (214)
T TIGR00123 188 PLAIAEGLLTVMIYDYITK 206 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788889999988888887
No 35
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=22.95 E-value=4.7e+02 Score=27.59 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=49.1
Q ss_pred CcHHHHHHHHHHHHHhhh--hcccccccccC-ccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCCcHhhhhhhhhhcc
Q 044092 217 NNILLMLAGAGLLWMGWT--GFNGGDPYVIS-TDASLAVLNTHVCTATSLITWLL---LDRIFFGKTSVIGAVQGMITGL 290 (470)
Q Consensus 217 ~s~~~~~lG~~lLw~GW~--gFN~gs~~~~~-~~~~~a~~NT~la~a~g~l~~~~---~~~~~~~k~~~~~~~nG~LaGl 290 (470)
|=+|++..|.+++=+... +.+. ...+ ...-...+|+.=..+.+...-.+ +.|-..+|+ .++-|.++|+
T Consensus 21 ~MlP~VvagGil~ai~~~~~g~~~---~~~~~~~~~~~~l~~iG~~~f~lmvpvlaayIa~SIa~kp---glapg~i~G~ 94 (359)
T PRK10478 21 HMIPFVVAGGILLAVSVMLYGKGA---VPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIADRS---ALAPCAIGAW 94 (359)
T ss_pred HhHhHHHHHHHHHHHHHHHccccc---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---cccHHHHHHH
Confidence 456888888888876543 2211 1100 01112223322222223222222 223335666 3578888888
Q ss_pred eeecCCCCccchHHHHHHHHhhhhHHH
Q 044092 291 VCITPAAGIVQGWAAIIMGLCSGSIPW 317 (470)
Q Consensus 291 VaIta~~~~v~p~~A~iiG~iag~i~~ 317 (470)
.|...++++ .+|++.|+++|.+..
T Consensus 95 ~a~~~~~GF---lGaii~G~laGy~v~ 118 (359)
T PRK10478 95 VGNSFGAGF---FGALIAGIIGGIVVH 118 (359)
T ss_pred HHhcCCcch---HHHHHHHHHHHHHHH
Confidence 887666544 588899999887654
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.51 E-value=1.6e+02 Score=29.30 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHH--------hcCCcHhhhhh---hhhhcceeecCCCCccchHHHHHHHHhhhhHHHHH
Q 044092 256 HVCTATSLITWLLLDRIF--------FGKTSVIGAVQ---GMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFT 319 (470)
Q Consensus 256 ~la~a~g~l~~~~~~~~~--------~~k~~~~~~~n---G~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~ 319 (470)
+++...+++.++.+++-- .-.+++..+.| ++|||+|--.+.-++.+. -++++|.++|++|-..
T Consensus 224 l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si-~sillGflsg~iYava 297 (309)
T COG5070 224 LMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSI-FSILLGFLSGAIYAVA 297 (309)
T ss_pred HHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHH-HHHHHHHHHHHHHHHH
Confidence 556666777777766642 12356666655 789999998888776654 5789999999998654
No 37
>PF09877 DUF2104: Predicted membrane protein (DUF2104); InterPro: IPR019211 This entry is found in various hypothetical archaeal proteins, has no known function.
Probab=20.37 E-value=1.8e+02 Score=24.96 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHH------hcCCcHhhhhhhhhhcc-eeecCCC-CccchHHHHHHHHh
Q 044092 256 HVCTATSLITWLLLDRIF------FGKTSVIGAVQGMITGL-VCITPAA-GIVQGWAAIIMGLC 311 (470)
Q Consensus 256 ~la~a~g~l~~~~~~~~~------~~k~~~~~~~nG~LaGl-VaIta~~-~~v~p~~A~iiG~i 311 (470)
.++.-.|....+..+|.. .||.|...+.-+.+.|+ +++.... ...-+.+++.+|..
T Consensus 9 ~i~fiiGs~~GL~ySYkKy~~P~v~k~iD~~ALv~aiiG~~~~~vn~~~~~~~~~ig~~li~~~ 72 (99)
T PF09877_consen 9 IILFIIGSFLGLEYSYKKYREPFVEKKIDKLALVLAIIGGLILAVNSPSSPILYTIGAFLIGFP 72 (99)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhcccHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHhhh
Confidence 344455666677777765 36789999999999998 7777662 23333444444443
Done!