Query 044092
Match_columns 470
No_of_seqs 131 out of 1202
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 19:49:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b2h_A AMT-1, ammonium transpo 100.0 2E-107 9E-112 841.4 31.1 394 22-448 1-395 (399)
2 1u7g_A Probable ammonium trans 100.0 8E-100 3E-104 783.0 29.4 381 21-425 4-385 (385)
3 3b9w_A Ammonium transporter fa 100.0 2.3E-81 8E-86 647.9 27.4 343 39-446 25-378 (407)
4 3hd6_A Ammonium transporter RH 100.0 1.6E-77 5.6E-82 629.6 23.5 392 39-448 21-453 (490)
5 2b2h_A AMT-1, ammonium transpo 41.9 2.4E+02 0.0082 28.6 12.3 139 20-204 180-320 (399)
6 3b9w_A Ammonium transporter fa 32.3 3.2E+02 0.011 27.8 11.4 143 22-204 172-315 (407)
7 3hd6_A Ammonium transporter RH 25.1 71 0.0024 33.5 5.1 73 284-360 135-207 (490)
8 3ro2_B Peptide of nuclear mito 22.8 47 0.0016 20.5 1.9 22 3-24 1-22 (28)
9 1u7g_A Probable ammonium trans 8.9 1.3E+03 0.046 22.8 11.5 141 20-205 191-334 (385)
10 4ezc_A UREA transporter 1; mem 8.3 3.7E+02 0.013 27.1 5.0 70 281-360 65-134 (384)
No 1
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=100.00 E-value=2.5e-107 Score=841.36 Aligned_cols=394 Identities=33% Similarity=0.622 Sum_probs=362.3
Q ss_pred ccchhhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCcccc
Q 044092 22 MNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSL 101 (470)
Q Consensus 22 ~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~~~ 101 (470)
+|+.|+.|+|+|++|| ++|||||+++|+|++|+||++|+++||++++++++++||++||+++||+ +.++|+|+.++++
T Consensus 1 ~~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~-~~~~~iG~~~~~~ 78 (399)
T 2b2h_A 1 MSDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGN-DISGIIGGLNYAL 78 (399)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSS-EETTTEECSTTGG
T ss_pred CCcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCcCCchHhh
Confidence 4678999999999999 9999999999999999999999999999999999999999999999997 4467999854433
Q ss_pred cchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCcee
Q 044092 102 GENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLD 181 (470)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~D 181 (470)
..+.. .....+++||++||++|++|++|+++||+|+.+|++|+++|++++|||++||+|+ +|||.++|++|
T Consensus 79 ~~~~~--------~~~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~~D 149 (399)
T 2b2h_A 79 LSGVK--------GEDLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWG-GGWLAKLGALD 149 (399)
T ss_dssp GTTCC--------THHHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHTTCCC
T ss_pred ccCCC--------CCchhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheEC-chhHHhcCCcc
Confidence 22210 1125789999999999999999999999999999999999999999999999995 89999999999
Q ss_pred cCCCeehhhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHHH
Q 044092 182 YSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTAT 261 (470)
Q Consensus 182 faG~~vVH~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~ 261 (470)
||||++||++||++||+++++||||++|+++++||||++++++|+++||+||||||+||++..++.+.++++||++|+++
T Consensus 150 FAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaa 229 (399)
T 2b2h_A 150 FAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAV 229 (399)
T ss_dssp SSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCccc
Q 044092 262 SLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLH 341 (470)
Q Consensus 262 g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~ 341 (470)
|+++|+++++++ ||+|+..++||+|||||||||+|++++||+|++||+++|++|+++++ +++| +|||||||+++
T Consensus 230 g~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~-l~~k----l~iDD~l~a~~ 303 (399)
T 2b2h_A 230 AGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMD-FRIK----KKIDESLDAWA 303 (399)
T ss_dssp HHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHH-HHHH----TTCCCTTCHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHH-HHHH----cCCCCCCCcee
Confidence 999999999999 99999999999999999999999999999999999999999999984 4443 89999999999
Q ss_pred cccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 044092 342 THAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILV 421 (470)
Q Consensus 342 vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~~ 421 (470)
+||+||+||++++|+|++++.. +.+|++|+ +.+|++.|++|++++++|+++.++++++++|++.
T Consensus 304 vHgv~Gi~G~l~~glfa~~~~~--------g~~Gl~~g--------~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~ 367 (399)
T 2b2h_A 304 IHGIGGLWGSVAVGILANPEVN--------GYAGLLFG--------NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAV 367 (399)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHH--------SCCCGGGT--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHcccccc--------CCCccccC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999986532 23578884 3589999999999999999999999999999999
Q ss_pred CCCCChHHHhcc-ChhhhchhhhhcccC
Q 044092 422 PLRMSEEDMEIG-DEAAHGEEAYAIWGE 448 (470)
Q Consensus 422 ~LRv~~e~E~~G-D~~~hg~~ay~~~~~ 448 (470)
+||++||||++| |.+||||++||+.+.
T Consensus 368 glRv~~e~E~~GlD~~~hg~~ay~~~~~ 395 (399)
T 2b2h_A 368 GLRVSSQEEYVGLDLSQHEEVAYTLEHH 395 (399)
T ss_dssp CSBCCHHHHHHCHHHHHHCCCSCC----
T ss_pred cCCCCHHHHHhCCCHHHhCcccCCcccc
Confidence 999999999999 999999999987543
No 2
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=100.00 E-value=7.7e-100 Score=782.99 Aligned_cols=381 Identities=33% Similarity=0.572 Sum_probs=350.0
Q ss_pred cccchhhHHHHHHHHHHHHHhH-HHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCcc
Q 044092 21 WMNKADNAWQLTAATLVGMQSV-PGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNV 99 (470)
Q Consensus 21 ~~~~~d~~w~l~~~~lV~~~m~-~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~ 99 (470)
.+|+.|+.|+|+|++|| ++|| |||+++|+|++|+||+.|+++||+.++++++++||++||+++||+ + ++|+|+.++
T Consensus 4 ~~~~~d~~w~l~~~~LV-~~M~~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~-~-~~~iG~~~~ 80 (385)
T 1u7g_A 4 VADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGE-G-NNFFGNINW 80 (385)
T ss_dssp CCCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSS-C-SSSCCCSTT
T ss_pred ccccccHHHHHHHHHHH-HHHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-CccccCcch
Confidence 46789999999999999 9999 999999999999999999999999999999999999999999998 4 579998654
Q ss_pred cccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCc
Q 044092 100 SLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGL 179 (470)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~ 179 (470)
++..+...++ .++++|...+++||++||+++++|++|+++||+|+.+|++|+++|++++|||++||+|+ +|||.++|+
T Consensus 81 ~~l~~~~~~~-~~~~ip~~~~~~FQ~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW~-~GwL~~lG~ 158 (385)
T 1u7g_A 81 LMLKNIELTA-VMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWG-GGLLASHGA 158 (385)
T ss_dssp GGGTTCCTTC-EETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHHHHS-SCHHHHHTC
T ss_pred hhccCCCCcc-cccCcchHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHhhhhhheeEc-chhhhhcce
Confidence 4333321111 12468888999999999999999999999999999999999999999999999999995 899999999
Q ss_pred eecCCCeehhhhhHHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHH
Q 044092 180 LDYSGGYVIHLSSGVAGYTAAFWVGPRLTRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCT 259 (470)
Q Consensus 180 ~DfaG~~vVH~~gG~~gL~~a~~lG~R~g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~ 259 (470)
+|||||++||++||++||+++++||||++|+++++||||++++++|+++||+||||||+||++..++.+.++++||++|+
T Consensus 159 ~DFAGs~vVH~~gG~aaL~~a~~LG~R~g~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAa 238 (385)
T 1u7g_A 159 LDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVAT 238 (385)
T ss_dssp CCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHH
T ss_pred eeccCCeEEEecchHHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhhhcchhhhhccchhHhHHHHHHHHH
Confidence 99999999999999999999999999999888899999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCc
Q 044092 260 ATSLITWLLLDRIFFGKTSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAV 339 (470)
Q Consensus 260 a~g~l~~~~~~~~~~~k~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~ 339 (470)
++|+++|++++++++||+|+..++||+|||||||||+|++++||+|++||+++|++|+++++++++| +|||||||+
T Consensus 239 aag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~----l~iDD~l~a 314 (385)
T 1u7g_A 239 AAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL----LRVDDPCDV 314 (385)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH----HCSCCGGGH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhhccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHh----CCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999988765 899999999
Q ss_pred cccccchhhhhhhhhhhccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044092 340 LHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRI 419 (470)
Q Consensus 340 ~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~ 419 (470)
+++||+||+||++++|+|++++... . +..+|++|+ .|++.|++|++++.+|+++.++++++++|+
T Consensus 315 ~~vHgv~Gi~G~l~~glfa~~~~~g----~-~~~~G~~~g----------~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~ 379 (385)
T 1u7g_A 315 FGVHGVCGIVGCIMTGIFAASSLGG----V-GFAEGVTMG----------HQLLVQLESIAITIVWSGVVAFIGYKLADL 379 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGTC----C-CCCTTCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccHHHHHHHHHhccccccC----c-cccCCcchh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999876421 1 012355443 699999999999999999999999999999
Q ss_pred HcCCCC
Q 044092 420 LVPLRM 425 (470)
Q Consensus 420 ~~~LRv 425 (470)
+.+|||
T Consensus 380 ~~glRv 385 (385)
T 1u7g_A 380 TVGLRV 385 (385)
T ss_dssp HTCSBC
T ss_pred ccCCcC
Confidence 999997
No 3
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=100.00 E-value=2.3e-81 Score=647.86 Aligned_cols=343 Identities=19% Similarity=0.251 Sum_probs=302.1
Q ss_pred HHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCcccccchhhhhcccCCCCccc
Q 044092 39 MQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSLGENYLLQKAFLGKFPNA 118 (470)
Q Consensus 39 ~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~~~~~~~~~~~~~~~~~~~~ 118 (470)
.++.+||.++++++ +||..+.+.+|++..+ ..+.|++++|. + +|.. ++++|..
T Consensus 25 vMi~iGfGFL~~~L--rk~~~s~v~~n~l~~a-~~~QW~~l~~~--~------Gf~~----------------~g~ip~~ 77 (407)
T 3b9w_A 25 AMLLVGFGFLMVFV--RRYGFSATTGTYLVVA-TGLPLYILLRA--N------GIFG----------------HALTPHS 77 (407)
T ss_dssp HHHHHHHHHHGGGS--TTCHHHHHHHHHHHHH-HHHHHHHHHHH--T------TTTS----------------SCCCSSS
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHHHHHHHHhc--c------cccC----------------CCcchHH
Confidence 35567999999998 9999999999999854 67899999881 1 1111 2467888
Q ss_pred hhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccCCceecCCCeehhhhhHHHHHH
Q 044092 119 TMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKLGLLDYSGGYVIHLSSGVAGYT 198 (470)
Q Consensus 119 ~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~lG~~DfaG~~vVH~~gG~~gL~ 198 (470)
.+++||++||++|++|++|+++||+|+.+|++++ +|.+++||+++||+|+ +||+...|++|||||++||++||++||+
T Consensus 78 ~~~~fq~~Faa~t~~IvsGAvaeR~kf~~~li~~-~~~~~vY~~~~~wvw~-gG~~~~~G~~DfAGs~vVH~~gG~~aLa 155 (407)
T 3b9w_A 78 VDAVIYAEFAVATGLIAMGAVLGRLRVFQYALLA-LFIVPVYLLNEWLVLD-NASGLTEGFQDSAGSIAIHAFGAYFGLG 155 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHH-HHHHHHHHHHHHHHTT-CTTSSCTTCCCTTCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH-HHHHHhccceeEEEeC-CcchhhcceeeccCceEEEeCchHHHHH
Confidence 9999999999999999999999999999999997 6789999999999995 7888777999999999999999999999
Q ss_pred HHHHHcCCCCCC-CCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCccchhhHHHHHHHHHHHHHHHHHHHHH-HhcC
Q 044092 199 AAFWVGPRLTRD-RERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVISTDASLAVLNTHVCTATSLITWLLLDRI-FFGK 276 (470)
Q Consensus 199 ~a~~lG~R~g~~-~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~~~~~a~~NT~la~a~g~l~~~~~~~~-~~~k 276 (470)
++++||||++|+ +++++|||++++++|+++||+||||||+| +..++.+.++++||++|+++|+++|++++++ .+||
T Consensus 156 ~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~G--l~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK 233 (407)
T 3b9w_A 156 VSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATA--IVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGK 233 (407)
T ss_dssp HHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhh--hccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999998653 12389999999999999999999999999 4456788999999999999999999999998 7899
Q ss_pred CcHhhhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCccccccchhhhhhhhhhh
Q 044092 277 TSVIGAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGV 356 (470)
Q Consensus 277 ~~~~~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~vHg~~Gi~G~i~~gl 356 (470)
+|+..++||+|||||||||+|++++||+|++||++||++|+++++++++++++|+|||||||++++||+||+||++++++
T Consensus 234 ~~~~~~~nG~LAGLVAITa~~~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~gl 313 (407)
T 3b9w_A 234 ASIVDMANAALAGGVAIGSVCNIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAIL 313 (407)
T ss_dssp CCHHHHHHHTTHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHH
T ss_pred CCHHHHHHhhhhhhheeccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred ccccccchhhccccccccceeecccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHhcc---
Q 044092 357 FAEPKLNYLFYGYYAQYVGLFYGFDMGKVATGFRQIGIQLLGILFVVALNITTTSLICLFIRILVPLRMSEEDMEIG--- 433 (470)
Q Consensus 357 fa~~~~~~~~~~~~~~~~Gl~~gg~~~~~~~~~~ql~~Ql~g~~v~~~~s~~~~~ii~~il~~~~~LRv~~e~E~~G--- 433 (470)
|+.+. . ..|++|++++++|+++.++++++++|+ |+++|+|.+|
T Consensus 314 fa~~~----------------------------~--~~Ql~g~~~~~~~s~v~~~i~~~il~~----r~~~e~e~~g~~~ 359 (407)
T 3b9w_A 314 IVPGI----------------------------A--VAQLTGIGITLALALIGGVIAGALIKL----TGTTKQAYEDSHE 359 (407)
T ss_dssp HSTTC----------------------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCSSTTCGGGT
T ss_pred HccCC----------------------------c--HHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCHHHHcCCccc
Confidence 98641 1 159999999999999999999999998 9999999988
Q ss_pred ------Chhhhchhhhhcc
Q 044092 434 ------DEAAHGEEAYAIW 446 (470)
Q Consensus 434 ------D~~~hg~~ay~~~ 446 (470)
|..||||++||++
T Consensus 360 we~p~ld~~~hg~~ayp~~ 378 (407)
T 3b9w_A 360 FIHLAGPEDEHKAERLVLE 378 (407)
T ss_dssp SSSCCCGGGC---------
T ss_pred ccCccccHHHhchhhccch
Confidence 8999999999876
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-77 Score=629.62 Aligned_cols=392 Identities=20% Similarity=0.261 Sum_probs=321.4
Q ss_pred HHhHHHHHhhhhcccccccHHH-----------------HHHHHHHHHHHH-HHHHHhhhccccccCCCCCccccCCccc
Q 044092 39 MQSVPGLVILYGGAVKKKWAVN-----------------SAFMALYAFACV-LVCWVLWGYRMSFGTERYIAFWGAPNVS 100 (470)
Q Consensus 39 ~~m~~Gf~lle~G~vr~kn~~~-----------------~l~~~~~~~~i~-~i~~~~~Gy~lafg~~~~~~fiG~~~~~ 100 (470)
++.|..|+.++.=++|+++..+ .+...+..++++ ++++..+||.++|-+ +++ |..-..++
T Consensus 21 ~~~q~~~ivlf~~fv~y~~~~~~~~~~~~~~~~~~~~~~~~~~~Yp~fqDv~vMi~~GfGFLmtflk-ryg-~ssv~~n~ 98 (490)
T 3hd6_A 21 LLLQVIMVILFGVFVRYDFEADAHWWSERTHKNLSDMENEFYYRYPSFQDVHVMVFVGFGFLMTFLQ-RYG-FSAVGFNF 98 (490)
T ss_dssp HHHHHHHHHHHHHHEECCCC------------------CHHHHHHHHHHHHHHHHHTHHHHHGGGST-TCH-HHHHHHHH
T ss_pred HHHHHHHHHhhheeEEecCCCCccccccccccccccccchhhhcCccchhHHHHHHHHHHHHHHHHH-Hhc-cHHHHHHH
Confidence 6678889999998898864321 245568899999 788889999999998 652 22211111
Q ss_pred c-----------cchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEc
Q 044092 101 L-----------GENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWC 169 (470)
Q Consensus 101 ~-----------~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~ 169 (470)
+ .++++ ...+++++|..++++||++||++|++|++||++||+|+.+|++|+++ .+++||++ ||+
T Consensus 99 l~~a~~~Qwa~l~~g~~-~~~~~g~ip~~~~~~fq~~Faa~t~~IvsGAvaeR~k~~~~li~~~l-~~~vY~~~-~w~-- 173 (490)
T 3hd6_A 99 LLAAFGIQWALLMQGWF-HFLQDRYIVVGVENLINADFCVASVCVAFGAVLGKVSPIQLLIMTFF-QVTLFAVN-EFI-- 173 (490)
T ss_dssp HHHHHHHHHHHHHHHHT-TCBTTTBEECCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-HHHHHHHH-HHH--
T ss_pred HHHHHHHHHHHHHHHHh-ccccCCCccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHhhh-HHH--
Confidence 1 23332 22235789999999999999999999999999999999999999865 57899985 554
Q ss_pred CCcccccCCceecCCCeehhhhhHHHHHHHHHHHcCCC---CCCCCCCCCCcHHHHHHHHHHHHHhhhhcccccccccCc
Q 044092 170 PDGWLSKLGLLDYSGGYVIHLSSGVAGYTAAFWVGPRL---TRDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYVIST 246 (470)
Q Consensus 170 ~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~---g~~~~~~~~~s~~~~~lG~~lLw~GW~gFN~gs~~~~~~ 246 (470)
||.++|++|||||++||++||++||+++++||||. ++.++.++|||++++++|+++||+||||||+|++.. ++
T Consensus 174 ---~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R~~~~~~~~~~~~~hn~~~a~LGt~lLW~GWfGFN~gs~~~-~~ 249 (490)
T 3hd6_A 174 ---LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRRNLEQSKERQNSVYQSDLFAMIGTLFLWMYWPSFNSAISYH-GD 249 (490)
T ss_dssp ---HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCTTGGGGTTTSSCCHHHHHHHHHHHHHHHHHHHHHTTTTCSS-HH
T ss_pred ---HHhccCceeecCceeeeHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHhhchhhhcc-ch
Confidence 68899999999999999999999999999999983 445567889999999999999999999999998753 45
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH--HhcCCcHhhhhhhhhhcceeecCCCC-ccchHHHHHHHHhhhhHHHHHHHHH
Q 044092 247 DASLAVLNTHVCTATSLITWLLLDRI--FFGKTSVIGAVQGMITGLVCITPAAG-IVQGWAAIIMGLCSGSIPWFTMMVV 323 (470)
Q Consensus 247 ~~~~a~~NT~la~a~g~l~~~~~~~~--~~~k~~~~~~~nG~LaGlVaIta~~~-~v~p~~A~iiG~iag~i~~~~~~~l 323 (470)
.+.++++||++|+++|+++|++++++ .+||+|+.+++||+|||||||||+|+ +++||+|++||++||++|+++++++
T Consensus 250 ~~~~a~~NT~lAaAag~lt~~~~s~l~~~~gK~s~~~~~nG~LAGLVAIT~~a~~~v~P~~AliIG~iaG~i~~~~~~~l 329 (490)
T 3hd6_A 250 SQHRAAINTYCSLAACVLTSVAISSALHKKGKLDMVHIQNATLAGGVAVGTAAEMMLMPYGALIIGFVCGIISTLGFVYL 329 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCHHHHHHGGGHHHHHTTTTTTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhhhceeeeEEEEccCcccccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999997 47899999999999999999999999 6999999999999999999999987
Q ss_pred HhhhccccccccccCccccccchhhhhhhhhhhccccccchhhccccccccceeecc-----cCCccchhHHHHHHHHHH
Q 044092 324 HKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEPKLNYLFYGYYAQYVGLFYGF-----DMGKVATGFRQIGIQLLG 398 (470)
Q Consensus 324 ~~~~~~~~~IDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~Gl~~gg-----~~~~~~~~~~ql~~Ql~g 398 (470)
.+++++|+|||||||++++||+||+||++++|+|+.....+.+ +.+|++|.- ++++ .+..|++.|++|
T Consensus 330 ~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~~~-----g~~Gl~~~f~~~~~~gg~--~~~~ql~~Ql~g 402 (490)
T 3hd6_A 330 TPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEVY-----GKEGLVHSFDFQGFNGDW--TARTQGKFQIYG 402 (490)
T ss_dssp HHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC---------------------------CH--HHHHHHHHHHHH
T ss_pred HHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHhcccccccc-----ccCcceeccccccccCCc--chHHHHHHHHHH
Confidence 7666667999999999999999999999999999875422110 235666510 0111 145899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHhcc-ChhhhchhhhhcccC
Q 044092 399 ILFVVALNITTTSLICLFIRILVPLRMSEEDMEIG-DEAAHGEEAYAIWGE 448 (470)
Q Consensus 399 ~~v~~~~s~~~~~ii~~il~~~~~LRv~~e~E~~G-D~~~hg~~ay~~~~~ 448 (470)
++++++|+++.++++++++|++.++|+++|+|.+| |..|+.++.|+++..
T Consensus 403 v~~~~~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~~~ 453 (490)
T 3hd6_A 403 LLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIP 453 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCcccccccCC
Confidence 99999999999999999999999999999999999 999999998876544
No 5
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=41.89 E-value=2.4e+02 Score=28.64 Aligned_cols=139 Identities=16% Similarity=0.128 Sum_probs=86.0
Q ss_pred ccccchhhHHHHHHHHHHHHHhHHHHHhhhhccccccc--HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCC
Q 044092 20 GWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKW--AVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAP 97 (470)
Q Consensus 20 ~~~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn--~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~ 97 (470)
+.+.+-|..+.++.+.+. ++--+|| .+|+.-..| ...+++...+..+.+.+.|.++-+-. ++.+.
T Consensus 180 ~~~~~hn~~~~~lG~~lL-W~GWfGF---N~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~--gk~~~------- 246 (399)
T 2b2h_A 180 YSIEPHSIPLTLIGAALL-WFGWFGF---NGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK--GKPGS------- 246 (399)
T ss_dssp SCCCCSCHHHHHHHHHHH-HHHHHHH---HHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCH-------
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHhh---cHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH-------
Confidence 345666777888888766 6655554 555544433 34566777888888899998876654 43110
Q ss_pred cccccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCcccccC
Q 044092 98 NVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWLSKL 177 (470)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL~~l 177 (470)
....+. +.+-.....+-++=.++..-++.. +++++++.... -...|+
T Consensus 247 ----------------------~~~~nG---~lAGLVaITa~~~~v~p~~A~iiG-~iag~i~~~~~-------~l~~kl 293 (399)
T 2b2h_A 247 ----------------------LGIVSG---AIAGLAAITPAAGFVDVKGAIVIG-LVAGIVCYLAM-------DFRIKK 293 (399)
T ss_dssp ----------------------HHHHHH---HHHHHHHHTTTTTTCCHHHHHHHH-HHHHHHHHHHH-------HHHHHT
T ss_pred ----------------------HHHHHH---HHHhhhhhccccccCCHHHHHHHH-HHHHHHHHHHH-------HHHHHc
Confidence 001111 111112223333556666666665 34555544332 133579
Q ss_pred CceecCCCeehhhhhHHHHHHHHHHHc
Q 044092 178 GLLDYSGGYVIHLSSGVAGYTAAFWVG 204 (470)
Q Consensus 178 G~~DfaG~~vVH~~gG~~gL~~a~~lG 204 (470)
+..|--+.-.||..+|..|..++-+..
T Consensus 294 ~iDD~l~a~~vHgv~Gi~G~l~~glfa 320 (399)
T 2b2h_A 294 KIDESLDAWAIHGIGGLWGSVAVGILA 320 (399)
T ss_dssp TCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCceeccchhhHHHHHHHHHHc
Confidence 999999999999999999988876664
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=32.34 E-value=3.2e+02 Score=27.78 Aligned_cols=143 Identities=14% Similarity=0.059 Sum_probs=84.1
Q ss_pred ccchhhHHHHHHHHHHHHHhHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCCcccc
Q 044092 22 MNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKWAVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAPNVSL 101 (470)
Q Consensus 22 ~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~~~~~ 101 (470)
+.+-|..+.++.+.+. ++--+| +.+|+.......++++...++.+.+.+.|.++-+-+-.|+.+. .
T Consensus 172 ~~~hn~~~~~lGt~lL-W~GWfG---FN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~---~------- 237 (407)
T 3b9w_A 172 SDATSDRFSMLGSMVL-WLFWPS---FATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASI---V------- 237 (407)
T ss_dssp CCHHHHHHHHHHHHHH-HHHHHH---HHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCH---H-------
T ss_pred CCCCCHHHHHHHHHHH-HHHHHh---hhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCH---H-------
Confidence 5666777777777766 664444 4666433344556777888888889999987766443332110 0
Q ss_pred cchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccc-ccCCce
Q 044092 102 GENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWL-SKLGLL 180 (470)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL-~~lG~~ 180 (470)
...+. +.+-.....+-++=.++..-+++. +++++++.....+. .-+| .+++..
T Consensus 238 -------------------~~~nG---~LAGLVAITa~~~~v~p~~A~iIG-~iaG~i~~~~~~~l---~~~l~~~l~iD 291 (407)
T 3b9w_A 238 -------------------DMANA---ALAGGVAIGSVCNIVGPVGAFVIG-LLGGAISVVGFVFI---QPMLESKAKTI 291 (407)
T ss_dssp -------------------HHHHH---TTHHHHHHTTTTTTSCHHHHHHHH-HHHHHHHHHHHHTH---HHHHHHHSCCC
T ss_pred -------------------HHHHh---hhhhhheeccCCCCCCHHHHHHHH-HHHHHHHHHHHHHH---HHHHHhcCCCC
Confidence 00111 111111122223446666666665 34555544332211 0122 358999
Q ss_pred ecCCCeehhhhhHHHHHHHHHHHc
Q 044092 181 DYSGGYVIHLSSGVAGYTAAFWVG 204 (470)
Q Consensus 181 DfaG~~vVH~~gG~~gL~~a~~lG 204 (470)
|--|.-.||..+|..|..++-+..
T Consensus 292 D~l~a~~vHgv~Gi~G~l~~glfa 315 (407)
T 3b9w_A 292 DTCGVHNLHGLPGLLGGFSAILIV 315 (407)
T ss_dssp CTTCHHHHTTHHHHHHHHHHHHHS
T ss_pred CCCCCeecchHHHHHHHHHHHHHc
Confidence 999999999999999998876664
No 7
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=25.11 E-value=71 Score=33.54 Aligned_cols=73 Identities=16% Similarity=0.128 Sum_probs=51.3
Q ss_pred hhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCccccccchhhhhhhhhhhcccc
Q 044092 284 QGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEP 360 (470)
Q Consensus 284 nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~vHg~~Gi~G~i~~glfa~~ 360 (470)
=.+.+-.+...+.++-+++.+-++..++..++|... .++ ...+++..|--+.-.||-.+|..|...+-+...+
T Consensus 135 Faa~t~~IvsGAvaeR~k~~~~li~~~l~~~vY~~~-~w~---~L~~lG~~DFAGs~vVH~~gG~aaLa~a~vLG~R 207 (490)
T 3hd6_A 135 FCVASVCVAFGAVLGKVSPIQLLIMTFFQVTLFAVN-EFI---LLNLLKVKDAGGSMTIHTFGAYFGLTVTRILYRR 207 (490)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-HHH---HHTTSCCCCTTCTTTTHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-HHH---HHhccCceeecCceeeeHHHHHHHHHHHHhcCCc
Confidence 333444555566678888888888877766665543 232 1123899999999999999999998877776644
No 8
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=22.77 E-value=47 Score=20.53 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=15.3
Q ss_pred CCcccccCCCCCCCCCCccccc
Q 044092 3 NSSFYLPENLAPDDASPGWMNK 24 (470)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (470)
.||||+-+--+.|+..++|-..
T Consensus 1 rss~ymgtcqdepeqlddw~ri 22 (28)
T 3ro2_B 1 RNSFYMGTCQDEPEQLDDWNRI 22 (28)
T ss_dssp ---CCCCSCCCCCCCCCCTTTG
T ss_pred CCceeeccccCCcccchhHHHH
Confidence 3899999998888888777543
No 9
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=8.94 E-value=1.3e+03 Score=22.85 Aligned_cols=141 Identities=13% Similarity=0.094 Sum_probs=86.3
Q ss_pred ccccchhhHHHHHHHHHHHHHhHHHHHhhhhccccccc--HHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCccccCC
Q 044092 20 GWMNKADNAWQLTAATLVGMQSVPGLVILYGGAVKKKW--AVNSAFMALYAFACVLVCWVLWGYRMSFGTERYIAFWGAP 97 (470)
Q Consensus 20 ~~~~~~d~~w~l~~~~lV~~~m~~Gf~lle~G~vr~kn--~~~~l~~~~~~~~i~~i~~~~~Gy~lafg~~~~~~fiG~~ 97 (470)
+.+.+-|..+.++.+.+. ++--+|| .+|+.-..| ...+++...+..+.+.+.|.++-|-. .++.+
T Consensus 191 ~~~~~hn~~~~~lGt~lL-W~GWfGF---N~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~-~gk~~-------- 257 (385)
T 1u7g_A 191 EAFKPHNLPMVFTGTAIL-YIGWFGF---NAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWAL-RGLPS-------- 257 (385)
T ss_dssp SSCCGGGHHHHHHHHHHH-HHHHHHH---HHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSSCC--------
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHhhh---cchhhhhccchhHhHHHHHHHHHHHHHHHHHHHHHHH-cCCCC--------
Confidence 456667778888888777 6666664 455444333 34566777888888899998775531 22200
Q ss_pred cccccchhhhhcccCCCCccchhhhhhhHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHhhhcceeeeeEcCCccc-cc
Q 044092 98 NVSLGENYLLQKAFLGKFPNATMVYFQFVFAAITLILIAGAVLGRMNFYAWMMFVPLWLTFSYTIGAFSIWCPDGWL-SK 176 (470)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~l~~~~vYp~~~hwvW~~~GwL-~~ 176 (470)
+.-..+. +.+-.....+-++-.++..-++.. +++++++..... ++ .|
T Consensus 258 ---------------------~~~~~nG---~lAGLVaITa~~~~v~p~~A~iiG-~iag~i~~~~~~-------~l~~~ 305 (385)
T 1u7g_A 258 ---------------------LLGACSG---AIAGLVGVTPACGYIGVGGALIIG-VVAGLAGLWGVT-------MLKRL 305 (385)
T ss_dssp ---------------------HHHHHHH---HHHHHHHHTTTTTTSCHHHHHHHH-HHHHHHHHHHHH-------HHHHH
T ss_pred ---------------------HHHHHHH---HHHhhhhhccCCCCCCHHHHHHHH-hHHHHHHHHHHH-------HHHHh
Confidence 0001111 122222223333567777777776 445555544322 23 36
Q ss_pred CCceecCCCeehhhhhHHHHHHHHHHHcC
Q 044092 177 LGLLDYSGGYVIHLSSGVAGYTAAFWVGP 205 (470)
Q Consensus 177 lG~~DfaG~~vVH~~gG~~gL~~a~~lG~ 205 (470)
++..|--+.-.||..+|..|..++-+...
T Consensus 306 l~iDD~l~a~~vHgv~Gi~G~l~~glfa~ 334 (385)
T 1u7g_A 306 LRVDDPCDVFGVHGVCGIVGCIMTGIFAA 334 (385)
T ss_dssp HCSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCEeecccccHHHHHHHHHhcc
Confidence 89999999999999999999988877653
No 10
>4ezc_A UREA transporter 1; membrane protein, channel, SLC14, structural genomics, PSI-biology, NEW YORK consortium on membrane PROT structure, nycomps; HET: BGC BOG SPL; 2.36A {Bos taurus} PDB: 4ezd_A*
Probab=8.34 E-value=3.7e+02 Score=27.12 Aligned_cols=70 Identities=16% Similarity=0.301 Sum_probs=43.5
Q ss_pred hhhhhhhhcceeecCCCCccchHHHHHHHHhhhhHHHHHHHHHHhhhccccccccccCccccccchhhhhhhhhhhcccc
Q 044092 281 GAVQGMITGLVCITPAAGIVQGWAAIIMGLCSGSIPWFTMMVVHKRSAMLQKVDDTMAVLHTHAVAGSLGGLLTGVFAEP 360 (470)
Q Consensus 281 ~~~nG~LaGlVaIta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~~~~~~~IDD~~~~~~vHg~~Gi~G~i~~glfa~~ 360 (470)
..+|-.++|+.-. .+--+-+||.| +.++++.++.....+. ++-|+.-=.-..||.+|.+-+++.+.|..+
T Consensus 65 ~f~~n~lsGlliL-igl~i~sp~~a-l~allG~~vstltA~l--------lg~~~~~I~~GLyGfNg~Lvgial~~f~~~ 134 (384)
T 4ezc_A 65 VFVSNPISGILIL-VGLLVQNPWCA-LNGCVGTVVSTLTALL--------LSQDRSAITAGLQGYNATLVGILMAIYSDK 134 (384)
T ss_dssp GTCCCHHHHHHHH-HHHHHHCHHHH-HHHHHHHHHHHHHHHH--------TTCCHHHHHHTTTTHHHHHHHHHHHHTBTT
T ss_pred EecCCcHHHHHHH-HHHHHhhHHHH-HHHHHHHHHHHHHHHH--------hCCCHHHHHcchhhhhHHHHHHHHHHHhcc
Confidence 3456666665432 12223466655 6677777776655543 444544345688999999999998887543
Done!