BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044093
(427 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 128/282 (45%), Gaps = 28/282 (9%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLI---AECKKPHQNDPEKGVEAARLMLGTTNEAK--- 172
+N K ET LH+AAR GH ++ K L+ A+ ++D AAR+ G TN K
Sbjct: 43 SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI--GHTNMVKLLL 100
Query: 173 -------------DTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYI 219
T LH A R V+ V L +++ S G TPL++AA+ G +
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKV 159
Query: 220 NVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHL 279
V E ++ P G G T H A + ++ K+LL G+ S P +G+ PLH+
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHI 218
Query: 280 AAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDD 339
AA + V + LL+ SA ++ +G PLHLAA G M L+ S ++ L +
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAES-VQGVTPLHLAAQEGHAE-MVALLLSKQANGNLGNK 276
Query: 340 RGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
G H G ++L+K G +V+ G TPL
Sbjct: 277 SGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPL 315
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 122/275 (44%), Gaps = 26/275 (9%)
Query: 125 TLLHIAARHGHADIVKDLIAECKKP-----------HQNDPEKGVEAARLML----GTTN 169
T LH+A+ GH IVK+L+ P H E A+ +L
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 170 EAKD--TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIS 227
+AKD T LH A R ++VK+L E+ + P A AG TPL++AA G++ V ++
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 228 TCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHY 287
S A G T H AA + ++LL + + ++G PLH+A +
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLL-ERDAHPNAAGKNGLTPLHVAVHHNNLD 193
Query: 288 VVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSS-CELVDDRGWNVFH 346
+VK LL S A N G PLH+AA ++ + L++ S+ E V +G H
Sbjct: 194 IVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESV--QGVTPLH 250
Query: 347 FALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
A G V LLL + GNL N G TPL
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNL---GNKSGLTPL 282
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 111/240 (46%), Gaps = 21/240 (8%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQ-----------NDPEKGVEAARLML-- 165
A G T LH+A H + DIVK L+ PH + VE AR +L
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234
Query: 166 GTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINV 221
G + A+ T LH A + ++V +L + + N +G TPL+L A+ G++ V
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPV 293
Query: 222 VEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAA 281
+ +I MG T H A+ + ++ K LL + + +K + G+ PLH AA
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAA 352
Query: 282 YLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQEL-IRSCPSSCELVDDR 340
G +V LLK + ++ + ++ G PL +A +G ++ L + + +S LV D+
Sbjct: 353 QQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 58/111 (52%), Gaps = 18/111 (16%)
Query: 114 GLLLKANTK-GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAK 172
G+++ A T+ G T LH+A+ +G+ +VK L+ HQ D A+ LG +
Sbjct: 301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ-----HQADVN-----AKTKLGYS---- 346
Query: 173 DTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVE 223
LH+A + D+V +L K S P + ++ G TPL +A GYI+V +
Sbjct: 347 --PLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTD 394
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 206 GETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTL 265
G TPL+LAA G++ VV+ ++ GRT H AA E+ K+LL + +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 266 TSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQE 325
+K D++G PLHLAA G VVK LL+A K N G+ PLHLAA G L ++
Sbjct: 62 NAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKL 119
Query: 326 LIRS 329
L+ +
Sbjct: 120 LLEA 123
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T LH+AAR+GH ++VK L+ E G + + ++ T LH A R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-----------EAGAD-----VNAKDKNGRTPLHLAARN 45
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
++VVK+L + + N G TPL+LAA G++ VV+ ++ GRT
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP 104
Query: 243 SHAAAFCEDTEMTKVLLSS 261
H AA E+ K+LL +
Sbjct: 105 LHLAARNGHLEVVKLLLEA 123
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 56/109 (51%), Gaps = 5/109 (4%)
Query: 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332
G PLHLAA G VVK LL+A K N G+ PLHLAA G L ++ L+ + +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG-A 59
Query: 333 SCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
D G H A +G V+LLL++ G VN K+ +G TPL
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPL 105
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
+G+ AA +D E+ ++L+++ + +K D+ G+ PLHLAA G +V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 298 SAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTV 357
K + G PLHLAA G L ++ L+++ + D G+ H A G V
Sbjct: 60 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIV 117
Query: 358 ELLLKSPSLGNLVNEKNDDGNTPL 381
E+LLK+ G VN ++ G TP
Sbjct: 118 EVLLKA---GADVNAQDKFGKTPF 138
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 51/201 (25%)
Query: 137 DIVKDLIAECKKPHQNDPEKGVEAARLML--GTTNEAKD----TALHEAVRYNQVDVVKM 190
D+ K L+ E + Q+D R+++ G AKD T LH A R +++V++
Sbjct: 1 DLGKKLL-EAARAGQDDE------VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEV 53
Query: 191 LTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCE 250
L K + + G TPL+LAA G++ +VE
Sbjct: 54 LLKAGADVNA-KDKDGYTPLHLAAREGHLEIVE--------------------------- 85
Query: 251 DTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNK-GKI 309
VLL + + +K D+ G+ PLHLAA G +V+ LLKA A A +K GK
Sbjct: 86 ------VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAQDKFGKT 136
Query: 310 PLHLAALMGRLNTMQELIRSC 330
P LA G + + L ++
Sbjct: 137 PFDLAIREGHEDIAEVLQKAA 157
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 111 MCPGLLLKANTK-GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTN 169
M G + A K G T LH+AAR GH +IV+ L L G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADV 61
Query: 170 EAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDI 225
AKD T LH A R +++V++L K + + G TPL+LAA G++ +VE +
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVEVL 120
Query: 226 ISTCKSPADHGPMGRT 241
+ G+T
Sbjct: 121 LKAGADVNAQDKFGKT 136
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
+G+ AA +D E+ ++L+++ + +K D+ G+ PLHLAA G +V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 298 SAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTV 357
K + G PLHLAA G L ++ L+++ + D G+ H A G V
Sbjct: 60 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIV 117
Query: 358 ELLLKSPSLGNLVNEKNDDGNTPL 381
E+LLK+ G VN ++ G TP
Sbjct: 118 EVLLKA---GADVNAQDKFGKTPF 138
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 51/201 (25%)
Query: 137 DIVKDLIAECKKPHQNDPEKGVEAARLML--GTTNEAKD----TALHEAVRYNQVDVVKM 190
D+ K L+ E + Q+D R+++ G AKD T LH A R +++V++
Sbjct: 1 DLGKKLL-EAARAGQDDE------VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEV 53
Query: 191 LTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCE 250
L K + + G TPL+LAA G++ +VE
Sbjct: 54 LLKAGADVNA-KDKDGYTPLHLAAREGHLEIVE--------------------------- 85
Query: 251 DTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNK-GKI 309
VLL + + +K D+ G+ PLHLAA G +V+ LLKA A A +K GK
Sbjct: 86 ------VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA--GADVNAQDKFGKT 136
Query: 310 PLHLAALMGRLNTMQELIRSC 330
P LA G + + L ++
Sbjct: 137 PFDLAIDNGNEDIAEVLQKAA 157
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 26/136 (19%)
Query: 111 MCPGLLLKANTK-GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTN 169
M G + A K G T LH+AAR GH +IV+ L L G
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADV 61
Query: 170 EAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDI 225
AKD T LH A R +++V++L K + + G TPL+LAA G++ +VE +
Sbjct: 62 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVEVL 120
Query: 226 ISTCKSPADHGPMGRT 241
+ G+T
Sbjct: 121 LKAGADVNAQDKFGKT 136
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AAA +D E+ +L + G + D +G PLHLAA G+ +V+ LLK A
Sbjct: 6 LGKKLLEAAAAGQDDEVR--ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A+ ++ G PLHLAA G L ++ L++ + D GW H A SG
Sbjct: 64 DVNAS---DSAGITPLHLAAYDGHLEIVEVLLKHG-ADVNAYDRAGWTPLHLAALSGQLE 119
Query: 356 TVELLLK 362
VE+LLK
Sbjct: 120 IVEVLLK 126
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA Q D V++L + +N G TPL+LAA G + +VE ++
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
G T H AA+ E+ +VLL G + D+ GW PLHLAA G+ +V+ LLK
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLK-HGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--AD 296
G T H AA E+ +VLL + G + D G PLHLAAY G +V+ LLK AD
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKN-GADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 297 KSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRT 356
+A +A G PLHLAAL G+L ++ L++ + D G F +++ G
Sbjct: 98 VNAYDRA---GWTPLHLAALSGQLEIVEVLLKHG-ADVNAQDALGLTAFDISINQGQEDL 153
Query: 357 VELL 360
E+L
Sbjct: 154 AEIL 157
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 137 DIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDP 196
D+ K L+ E Q+D + + A + T++ T LH A Q+++V++L K
Sbjct: 5 DLGKKLL-EAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 197 SLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTK 256
+ +++AG TPL+LAA G++ +VE ++ + G T H AA E+ +
Sbjct: 64 DVNA-SDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVE 122
Query: 257 VLL 259
VLL
Sbjct: 123 VLL 125
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 292 LLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHS 351
+L A+ + ++ G PLHLAA G+L ++ L+++ + D G H A +
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG-ADVNASDSAGITPLHLAAYD 82
Query: 352 GSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSF 390
G VE+LLK G VN + G TPL A+SG
Sbjct: 83 GHLEIVEVLLKH---GADVNAYDRAGWTPLHLAALSGQL 118
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 19/124 (15%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+ G T LH+AA +G +IV+ L+ + +D A T LH A
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDS----------------AGITPLHLA 79
Query: 180 VRYNQVDVVKMLTKEDPSL-PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
+++V++L K + YD AG TPL+LAA G + +VE ++ +
Sbjct: 80 AYDGHLEIVEVLLKHGADVNAYD--RAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDAL 137
Query: 239 GRTA 242
G TA
Sbjct: 138 GLTA 141
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
+G+ AA +D E+ +L + G + D GW PLHLAAY G +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK--N 69
Query: 298 SAAYKANNK-GKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRT 356
A A++ G PLHLAA G L ++ L+++ + D G+ H A + G
Sbjct: 70 GADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG-ADVNANDHNGFTPLHLAANIGHLEI 128
Query: 357 VELLLK 362
VE+LLK
Sbjct: 129 VEVLLK 134
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 4/129 (3%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + +++ G TPL+LAA G++ +VE ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK- 294
+G T H AA E+ +VLL + G + D +G+ PLHLAA +G +V+ LLK
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKN-GADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 295 -ADKSAAYK 302
AD +A K
Sbjct: 136 GADVNAQDK 144
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 17/120 (14%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T LH+AA GH +IV+ L+ + +D LG T LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDS----------LGVT------PLHLAADR 90
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
++VV++L K + + +N G TPL+LAA G++ +VE ++ G+TA
Sbjct: 91 GHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 130 AARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVK 189
AA +G+ D VKDL+ P+ +D + T LH A ++VK
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDG----------------RTPLHYAAENGHKEIVK 54
Query: 190 MLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFC 249
+L + P ++ G TPL+ AAE G+ +V+ ++S P GRT H AA
Sbjct: 55 LLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 113
Query: 250 EDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
E+ K+LLS KG + D G PL LA G +VK L K
Sbjct: 114 GHKEIVKLLLS-KGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA D VK L E+ + P +++ G TPL+ AAE G+ +V+ ++S P
Sbjct: 8 LIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
GRT H AA E+ K+LL SKG + D G PLH AA G +VK LL +
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLL-SKGADPNAKDSDGRTPLHYAAENGHKEIVK-LLLS 124
Query: 296 DKSAAYKANNKGKIPLHLA 314
+ +++ G+ PL LA
Sbjct: 125 KGADPNTSDSDGRTPLDLA 143
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHE 178
+++ G T LH AA +GH +IVK L+++ P+ D + T LH
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG----------------RTPLHY 76
Query: 179 AVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
A ++VK+L + P ++ G TPL+ AAE G+ +V+ ++S P
Sbjct: 77 AAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD 135
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTL 265
GRT A + E+ K+L G L
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEKQGGWL 162
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 246 AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--ADKSAAYKA 303
AA + + K LL + G + D G PLH AA G +VK LL AD +A
Sbjct: 11 AAENGNKDRVKDLLEN-GADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK--- 66
Query: 304 NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKS 363
++ G+ PLH AA G ++ L+ S + D G H+A +G + V+LLL
Sbjct: 67 DSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL-- 123
Query: 364 PSLGNLVNEKNDDGNTPL 381
S G N + DG TPL
Sbjct: 124 -SKGADPNTSDSDGRTPL 140
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 280 AAYLGKHYVVKELLK--ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELV 337
AA G VK+LL+ AD +A+ ++ G+ PLH AA G ++ L+ S +
Sbjct: 11 AAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAK 66
Query: 338 DDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSG 388
D G H+A +G + V+LLL S G N K+ DG TPL A +G
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLL---SKGADPNAKDSDGRTPLHYAAENG 114
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
+G+ AA +D E+ ++L+++ + +K D+ G+ PLHLAA G +V+ LLKA
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 298 SAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTV 357
K + G PLHLAA G L ++ L+++ + D G+ H A G V
Sbjct: 72 DVNAK-DKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIV 129
Query: 358 ELLLKSPSLGNLVNEKNDDGNTPL 381
E+LLK+ G VN ++ G T
Sbjct: 130 EVLLKA---GADVNAQDKFGKTAF 150
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 26/137 (18%)
Query: 111 MCPGLLLKANTK-GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTN 169
M G + A K G T LH+AAR GH +IV+ L L G
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVL--------------------LKAGADV 73
Query: 170 EAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDI 225
AKD T LH A R +++V++L K + + G TPL+LAA G++ +VE +
Sbjct: 74 NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVEVL 132
Query: 226 ISTCKSPADHGPMGRTA 242
+ G+TA
Sbjct: 133 LKAGADVNAQDKFGKTA 149
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 48/166 (28%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLML--GTTNEAKD----TALHEAVRYNQVDVVK 189
+D+ K L+ E + Q+D R+++ G AKD T LH A R +++V+
Sbjct: 12 SDLGKKLL-EAARAGQDDE------VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVE 64
Query: 190 MLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFC 249
+L K + + G TPL+LAA G++ +VE
Sbjct: 65 VLLKAGADVNA-KDKDGYTPLHLAAREGHLEIVE-------------------------- 97
Query: 250 EDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
VLL + + +K D+ G+ PLHLAA G +V+ LLKA
Sbjct: 98 -------VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 135
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L + G + D G PLHLAA G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +AA K G PLHLAAL G L ++ L+++ + D G+ H A +G
Sbjct: 72 DVNAADK---MGDTPLHLAALYGHLEIVEVLLKNG-ADVNATDTYGFTPLHLAADAGHLE 127
Query: 356 TVELLLKSPSLGNLVNEKNDDGNTPL 381
VE+LLK G VN ++ G T
Sbjct: 128 IVEVLLK---YGADVNAQDKFGKTAF 150
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 17/120 (14%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G+T LH+AA GH +IV+ L+ H D V AA M DT LH A Y
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLL-----KHGAD----VNAADKM-------GDTPLHLAALY 90
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+++V++L K + + G TPL+LAA+ G++ +VE ++ G+TA
Sbjct: 91 GHLEIVEVLLKNGADVNA-TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTA 149
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 36/159 (22%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + +++ T LH A +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMT 255
+ A+ G+TPL+LAA G++ +VE
Sbjct: 71 ADVNA-ADKMGDTPLHLAALYGHLEIVE-------------------------------- 97
Query: 256 KVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
VLL + G + D +G+ PLHLAA G +V+ LLK
Sbjct: 98 -VLLKN-GADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 18/165 (10%)
Query: 130 AARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVK 189
AA +G+ D VKDL+ E G + + ++ T LH A +VVK
Sbjct: 11 AAENGNKDRVKDLL-----------ENGAD-----VNASDSDGKTPLHLAAENGHKEVVK 54
Query: 190 MLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFC 249
+L + P ++ G+TPL+LAAE G+ VV+ ++S P G+T H AA
Sbjct: 55 LLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 113
Query: 250 EDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
E+ K+LL S+G + D G PL LA G VVK L K
Sbjct: 114 GHKEVVKLLL-SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 17/147 (11%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHE 178
+++ G+T LH+AA +GH ++VK L+++ P+ D + T LH
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG----------------KTPLHL 76
Query: 179 AVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
A +VVK+L + P ++ G+TPL+LAAE G+ VV+ ++S P
Sbjct: 77 AAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD 135
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTL 265
GRT A + E+ K+L G L
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEKQGGWL 162
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 66/138 (47%), Gaps = 10/138 (7%)
Query: 246 AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--ADKSAAYKA 303
AA + + K LL + G + D G PLHLAA G VVK LL AD +A
Sbjct: 11 AAENGNKDRVKDLLEN-GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK--- 66
Query: 304 NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKS 363
++ GK PLHLAA G ++ L+ S + D G H A +G + V+LLL
Sbjct: 67 DSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL-- 123
Query: 364 PSLGNLVNEKNDDGNTPL 381
S G N + DG TPL
Sbjct: 124 -SQGADPNTSDSDGRTPL 140
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
+G+ AA +D E+ +L + G + D GW PLHLAA+ G +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 298 SAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTV 357
K ++ G PLHLAA G L ++ L+++ + D G+ H A G V
Sbjct: 72 DVNAK-DSLGVTPLHLAARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIV 129
Query: 358 ELLLKSPSLGNLVNEKNDDGNTPL 381
E+LLK+ G VN ++ G T
Sbjct: 130 EVLLKN---GADVNAQDKFGKTAF 150
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T LH+AA GH +IV+ L+ + D LG T LH A R
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDS----------LGVT------PLHLAARR 90
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+++V++L K + +++ G TPL+LAA+RG++ +VE ++ G+TA
Sbjct: 91 GHLEIVEVLLKNGADVNA-SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTA 149
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 48/165 (29%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLML--GTTNEAKD----TALHEAVRYNQVDVVK 189
+D+ K L+ E + Q+D R+++ G A+D T LH A + +++V+
Sbjct: 12 SDLGKKLL-EAARAGQDDE------VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVE 64
Query: 190 MLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFC 249
+L K + ++ G TPL+LAA RG++ +VE
Sbjct: 65 VLLKNGADVNA-KDSLGVTPLHLAARRGHLEIVE-------------------------- 97
Query: 250 EDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
+L G + D HG+ PLHLAA G +V+ LLK
Sbjct: 98 --------VLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 41/189 (21%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + A+N G TPL+LAA G++ +VE ++ H
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVEVLLK-------H 69
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK- 294
G D + + V G+ PLHLAAY G +V+ LLK
Sbjct: 70 GA-------------DVDASDVF--------------GYTPLHLAAYWGHLEIVEVLLKN 102
Query: 295 -ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGS 353
AD +A ++ G PLHLAA G L ++ L++ + D G F ++ +G+
Sbjct: 103 GADVNA---MDSDGMTPLHLAAKWGYLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGN 158
Query: 354 RRTVELLLK 362
E+L K
Sbjct: 159 EDLAEILQK 167
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+GR AA +D E+ +L + G + D G PLHLAAY G +V+ LLK A
Sbjct: 14 LGRKLLEAARAGQDDEVR--ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D A ++ G PLHLAA G L ++ L+++ + +D G H A G
Sbjct: 72 DVDA---SDVFGYTPLHLAAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLE 127
Query: 356 TVELLLKSPSLGNLVNEKNDDGNTPL 381
VE+LLK G VN ++ G T
Sbjct: 128 IVEVLLKH---GADVNAQDKFGKTAF 150
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHE 178
A+ G T LH+AA GH +IV+ L+ +D + G T LH
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD----------VFGYT------PLHL 86
Query: 179 AVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
A + +++V++L K + ++ G TPL+LAA+ GY+ +VE ++
Sbjct: 87 AAYWGHLEIVEVLLKNGADVNA-MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF 145
Query: 239 GRTA 242
G+TA
Sbjct: 146 GKTA 149
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 9/119 (7%)
Query: 145 ECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANN 204
E + Q+D + + A + + T LH A +++V++L K + DA++
Sbjct: 20 EAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADV--DASD 77
Query: 205 A-GETPLYLAAERGYINVVEDIISTCKSPADHGPM---GRTASHAAAFCEDTEMTKVLL 259
G TPL+LAA G++ +VE ++ K+ AD M G T H AA E+ +VLL
Sbjct: 78 VFGYTPLHLAAYWGHLEIVEVLL---KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 32/204 (15%)
Query: 127 LHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVD 186
LH AA GH DI L+ A + T +E + T L EA N ++
Sbjct: 15 LHAAAEAGHVDICHMLV----------------QAGANIDTCSEDQRTPLMEAAENNHLE 58
Query: 187 VVKMLTKEDPSL-PYDANNAGETPLYLAAERGYINVVEDIIS------TCKSPADHGPMG 239
VK L K + P DA G T L+LAA++G+ VV+ ++S C+ PM
Sbjct: 59 AVKYLIKAGALVDPKDAE--GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMI 116
Query: 240 RTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299
+ + ++ K+LL SKG+ + D + LH AA+ G + E+L A K
Sbjct: 117 WATEY-----KHVDLVKLLL-SKGSDINIRDNEENICLHWAAFSGC-VDIAEILLAAKCD 169
Query: 300 AYKANNKGKIPLHLAALMGRLNTM 323
+ N G PLH+AA R + +
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCV 193
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 10/212 (4%)
Query: 172 KDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKS 231
K + LH A VD+ ML + ++ + + TPL AAE ++ V+ +I
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 232 PADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKE 291
G T H AA E+ + LLS+ + D GW P+ + A KH + +
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM-IWATEYKHVDLVK 128
Query: 292 LLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCEL--VDDRGWNVFHFAL 349
LL + S +N+ I LH AA G ++ + L+ + C+L V+ G + H A
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL---AAKCDLHAVNIHGDSPLHIAA 185
Query: 350 HSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
V L L S L KN +G TPL
Sbjct: 186 RENRYDCVVLFLSRDSDVTL---KNKEGETPL 214
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 51/214 (23%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+ +G T LH+AA+ GH ++V+ L++ ++ + ++ T + A
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSN---------------GQMDVNCQDDGGWTPMIWA 118
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMG 239
Y VD+VK+L + IN+ ++ + C
Sbjct: 119 TEYKHVDLVKLLLSKGSD---------------------INIRDNEENICL--------- 148
Query: 240 RTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299
H AAF ++ ++LL++K L + + HG PLH+AA ++ V L D
Sbjct: 149 ----HWAAFSGCVDIAEILLAAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 300 AYKANNKGKIPLHLAALMGRLNTMQELIRSCPSS 333
K N +G+ PL A+L ++ + ++ ++ S
Sbjct: 204 TLK-NKEGETPLQCASLNSQVWSALQMSKALQDS 236
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 73/171 (42%), Gaps = 8/171 (4%)
Query: 240 RTASHAAAFCEDTEMTKVLLSSKGTL-TSKPDQHGWLPLHLAAYLGKHYVVKELLKADKS 298
R+ HAAA ++ +L+ + + T DQ PL AA VK L+KA
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR--TPLMEAAENNHLEAVKYLIKAGAL 69
Query: 299 AAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358
K + +G LHLAA G +Q L+ + DD GW +A V+
Sbjct: 70 VDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 359 LLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSF-IQSFVCHPKVDRLAFNHH 408
LLL S G+ +N ++++ N L A SG I + K D A N H
Sbjct: 129 LLL---SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH 176
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA D E+ +L + G + D GW PLHLAA+ G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGRDDEVR--ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A A G PL LAAL G L ++ L+++ + D G H A G
Sbjct: 72 DVNAVDHA---GMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTPLHLAAMFGHLE 127
Query: 356 TVELLLKSPSLGNLVNEKNDDGNTPL 381
VE+LLK+ G VN ++ G T
Sbjct: 128 IVEVLLKN---GADVNAQDKFGKTAF 150
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+ G T LH+AA +GH +IV+ L+ + G + + + A T L A
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLL-----------KNGAD-----VNAVDHAGMTPLRLA 87
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNA-GETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
+ +++V++L K + +AN+ G TPL+LAA G++ +VE ++
Sbjct: 88 ALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 239 GRTA 242
G+TA
Sbjct: 146 GKTA 149
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 174 TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPA 233
T LH A +++V++L K + ++AG TPL LAA G++ +VE ++
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 234 DHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHG 273
+ G T H AA E+ +VLL + G + D+ G
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFG 146
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 41/189 (21%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + + +G TPL+LAA G++ +VE
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVE------------ 64
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK- 294
+L G + D G PLHLAA +G +V+ LLK
Sbjct: 65 ----------------------VLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 295 -ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGS 353
AD +A + G PLHLAA+MG L ++ L++ + D G F ++ +G+
Sbjct: 103 GADVNAV---DTWGDTPLHLAAIMGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGN 158
Query: 354 RRTVELLLK 362
E+L K
Sbjct: 159 EDLAEILQK 167
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L + G + D G PLHLAA G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A + G PLHLAAL+G L ++ L++ + VD G H A G
Sbjct: 72 DVNA---IDIXGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 356 TVELLLKSPSLGNLVNEKNDDGNTPL 381
VE+LLK G VN ++ G T
Sbjct: 128 IVEVLLKH---GADVNAQDKFGKTAF 150
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + T+ + T LH A Y +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMT 255
+ + G TPL+LAA G++ +VE ++ G T H AA E+
Sbjct: 71 ADVNA-IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 256 KVLL 259
+VLL
Sbjct: 130 EVLL 133
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 17/123 (13%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+ G T LH+AA +GH +IV+ L+ H D + + T LH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLL-----KHGAD-----------VNAIDIXGSTPLHLA 87
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMG 239
+++V++L K + + G+TPL+LAA G++ +VE ++ G
Sbjct: 88 ALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 240 RTA 242
+TA
Sbjct: 147 KTA 149
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 78/187 (41%), Gaps = 41/187 (21%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + +N G TPL+LAA G++ +VE
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDNDGYTPLHLAASNGHLEIVE------------ 64
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK- 294
+L G + D G PLHLAA G +V+ LLK
Sbjct: 65 ----------------------VLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 295 -ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGS 353
AD +A +N G PLHLAA G L ++ L++ + D G F ++ +G+
Sbjct: 103 GADVNA---YDNDGHTPLHLAAKYGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGN 158
Query: 354 RRTVELL 360
E+L
Sbjct: 159 EDLAEIL 165
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L + G + D G+ PLHLAA G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A ++ G PLHLAA G L ++ L++ + D+ G H A G
Sbjct: 72 DVNA---SDLTGITPLHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLE 127
Query: 356 TVELLLK 362
VE+LLK
Sbjct: 128 IVEVLLK 134
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+ G T LH+AA +GH +IV+ L+ + +D + G T LH A
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD----------LTGIT------PLHLA 87
Query: 180 VRYNQVDVVKMLTKEDPSL-PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
+++V++L K + YD N G TPL+LAA+ G++ +VE ++
Sbjct: 88 AATGHLEIVEVLLKHGADVNAYD--NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKF 145
Query: 239 GRTA 242
G+TA
Sbjct: 146 GKTA 149
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + T+ T LH A +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMT 255
+ ++ G TPL+LAA G++ +VE ++ + G T H AA E+
Sbjct: 71 ADVNA-SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIV 129
Query: 256 KVLL 259
+VLL
Sbjct: 130 EVLL 133
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 41/189 (21%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + + +G TPL+LAA G++ +VE
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDASGLTPLHLAATYGHLEIVE------------ 64
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK- 294
+L G + D G PLHLAA +G +V+ LLK
Sbjct: 65 ----------------------VLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 295 -ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGS 353
AD +A + G PLHLAA+MG L ++ L++ + D G F ++ +G+
Sbjct: 103 GADVNAV---DTWGDTPLHLAAIMGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGN 158
Query: 354 RRTVELLLK 362
E+L K
Sbjct: 159 EDLAEILQK 167
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L + G + D G PLHLAA G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A + G PLHLAAL+G L ++ L++ + VD G H A G
Sbjct: 72 DVNA---IDIMGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLE 127
Query: 356 TVELLLKSPSLGNLVNEKNDDGNTPL 381
VE+LLK G VN ++ G T
Sbjct: 128 IVEVLLKH---GADVNAQDKFGKTAF 150
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + T+ + T LH A Y +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMT 255
+ + G TPL+LAA G++ +VE ++ G T H AA E+
Sbjct: 71 ADVNA-IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIV 129
Query: 256 KVLL 259
+VLL
Sbjct: 130 EVLL 133
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 17/123 (13%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+ G T LH+AA +GH +IV+ L+ H D V A +M T LH A
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLL-----KHGAD----VNAIDIM-------GSTPLHLA 87
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMG 239
+++V++L K + + G+TPL+LAA G++ +VE ++ G
Sbjct: 88 ALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFG 146
Query: 240 RTA 242
+TA
Sbjct: 147 KTA 149
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R + D V++L + A+ G TPL+LAA G++ +VE ++ +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNA-ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
+G T H AA E+ +VLL + + +K D +G PLHLAA G +V+ LLK
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAK-DDNGITPLHLAANRGHLEIVEVLLK 134
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
+G T H AA+ E+ +VLL + G + D G PLHLAA+ G +V+ LLK
Sbjct: 46 VGWTPLHLAAYWGHLEIVEVLLKN-GADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA 104
Query: 298 SAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTV 357
K +N G PLHLAA G L ++ L++ + D G F ++++G+
Sbjct: 105 DVNAKDDN-GITPLHLAANRGHLEIVEVLLK-YGADVNAQDKFGKTAFDISINNGNEDLA 162
Query: 358 ELLLK 362
E+L K
Sbjct: 163 EILQK 167
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHE 178
A+ G T LH+AA GH +IV+ L+ + D LG+T LH
Sbjct: 43 ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDT----------LGST------PLHL 86
Query: 179 AVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
A + +++V++L K + +N G TPL+LAA RG++ +VE ++
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 239 GRTASHAAAFCEDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 146 GKTAFDISINNGNEDLAEIL 165
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 292 LLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHS 351
+L A+ + A+ G PLHLAA G L ++ L+++ + D G H A H
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG-ADVNAYDTLGSTPLHLAAHF 90
Query: 352 GSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
G VE+LLK+ G VN K+D+G TPL
Sbjct: 91 GHLEIVEVLLKN---GADVNAKDDNGITPL 117
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 43/190 (22%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNA-GETPLYLAAERGYINVVEDIISTCKSPAD 234
L EA R Q D V++L + +AN+ G TPL+L G++ ++E ++ K AD
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NANDWFGITPLHLVVNNGHLEIIEVLL---KYAAD 72
Query: 235 HGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
+ D+ GW PLHLAAY G +V+ LLK
Sbjct: 73 -------------------------------VNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Query: 295 --ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSG 352
AD +A + +G PLHLAA G L ++ L++ + D G F ++ +G
Sbjct: 102 YGADVNA---MDYQGYTPLHLAAEDGHLEIVEVLLK-YGADVNAQDKFGKTAFDISIDNG 157
Query: 353 SRRTVELLLK 362
+ E+L K
Sbjct: 158 NEDLAEILQK 167
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 18/133 (13%)
Query: 111 MCPGLLLKANTK-GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTN 169
M G + AN G T LH+ +GH +I++ L+ + +D
Sbjct: 34 MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASD---------------- 77
Query: 170 EAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTC 229
++ T LH A +++V++L K + + G TPL+LAAE G++ +VE ++
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGADVNA-MDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 230 KSPADHGPMGRTA 242
G+TA
Sbjct: 137 ADVNAQDKFGKTA 149
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + + G TPL+LAA+ G++ +VE ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
G T H AA E+ +VLL + +K D G+ PLHLAAY G +V+ LLK
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L + G + D G PLHLAA G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A +N G PLHLAA G L ++ L++ + D G+ H A + G
Sbjct: 72 DVNAW---DNYGATPLHLAADNGHLEIVEVLLKHG-ADVNAKDYEGFTPLHLAAYDGHLE 127
Query: 356 TVELLLKSPSLGNLVNEKNDDGNTPL 381
VE+LLK G VN ++ G T
Sbjct: 128 IVEVLLK---YGADVNAQDKFGKTAF 150
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 17/120 (14%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T LH+AA+ GH +IV+ L+ + D T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGA----------------TPLHLAADN 90
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+++V++L K + + G TPL+LAA G++ +VE ++ G+TA
Sbjct: 91 GHLEIVEVLLKHGADVNA-KDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTA 149
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Query: 210 LYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKP 269
L AAE G + V+D+I GRT H AA E+ K+L+S KG +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLIS-KGADVNAK 66
Query: 270 DQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKA-NNKGKIPLHLAALMGRLNTMQELIR 328
D G PLH AA G +VK L+ K A A ++ G+ PLH AA G ++ LI
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLIS--KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI- 123
Query: 329 SCPSSCELVDDRGWNVFHFALHSGSRRTVELLLK 362
S + D G A G+ V+LL K
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 35/161 (21%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKD----T 174
+++ G T LH AA+ GH +IVK LI++ G AKD T
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLISK--------------------GADVNAKDSDGRT 72
Query: 175 ALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPAD 234
LH A + ++VK+L + + ++ G TPL+ AA+ G+ +V+ +IS
Sbjct: 73 PLHYAAKEGHKEIVKLLISKGADVNA-KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 235 HGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWL 275
GRT A + E+ K+L Q GWL
Sbjct: 132 SDSDGRTPLDLAREHGNEEIVKLL----------EKQGGWL 162
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 280 AAYLGKHYVVKELLK--ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELV 337
AA G VK+L++ AD +A+ ++ G+ PLH AA G ++ LI S +
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS---DSDGRTPLHYAAKEGHKEIVKLLI-SKGADVNAK 66
Query: 338 DDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
D G H+A G + V+LL+ S G VN K+ DG TPL
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLI---SKGADVNAKDSDGRTPL 107
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 206 GETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTL 265
G TPL+LAA G++ VV+ ++ GRT H AA E+ K+LL + +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 266 TSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
+K D++G PLHLAA G VVK LL+A
Sbjct: 62 NAK-DKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKS 298
GRT H AA E+ K+LL + + +K D++G PLHLAA G VVK LL+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 299 AAYKANNKGKIPLHLAALMGRLNTMQELIRS 329
K N G+ PLHLAA G L ++ L+ +
Sbjct: 61 VNAKDKN-GRTPLHLAARNGHLEVVKLLLEA 90
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332
G PLHLAA G VVK LL+A K N G+ PLHLAA G L ++ L+ + +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG-A 59
Query: 333 SCELVDDRGWNVFHFALHSGSRRTVELLLKSPS 365
D G H A +G V+LLL++ +
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T LH+AAR+GH ++VK L+ E G + + ++ T LH A R
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-----------EAGAD-----VNAKDKNGRTPLHLAARN 45
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIST 228
++VVK+L + + N G TPL+LAA G++ VV+ ++
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEA 90
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Query: 210 LYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKP 269
L AAE G + V+D+I GRT H AA E+ K+L+S KG +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAK 66
Query: 270 DQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKA-NNKGKIPLHLAALMGRLNTMQELIR 328
D G PLH AA G VVK L+ K A A ++ G+ PLH AA G ++ LI
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAENGHKEVVKLLI- 123
Query: 329 SCPSSCELVDDRGWNVFHFALHSGSRRTVELLLK 362
S + D G A G+ V+LL K
Sbjct: 124 SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 259 LSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKA-NNKGKIPLHLAALM 317
L G + D G PLH AA G VVK L+ K A A ++ G+ PLH AA
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAEN 80
Query: 318 GRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDG 377
G ++ LI S + D G H A +G + V+LL+ S G VN + DG
Sbjct: 81 GHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI---SKGADVNTSDSDG 136
Query: 378 NTPL 381
TPL
Sbjct: 137 RTPL 140
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 68/161 (42%), Gaps = 35/161 (21%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKD----T 174
+++ G T LH AA +GH ++VK LI++ G AKD T
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLISK--------------------GADVNAKDSDGRT 72
Query: 175 ALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPAD 234
LH A +VVK+L + + ++ G TPL+ AAE G+ VV+ +IS
Sbjct: 73 PLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131
Query: 235 HGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWL 275
GRT A + E+ K+L Q GWL
Sbjct: 132 SDSDGRTPLDLAREHGNEEVVKLL----------EKQGGWL 162
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 280 AAYLGKHYVVKELLK--ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELV 337
AA G VK+L++ AD +A+ ++ G+ PLH AA G ++ LI S +
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS---DSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAK 66
Query: 338 DDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSG 388
D G H A +G + V+LL+ S G VN K+ DG TPL A +G
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLI---SKGADVNAKDSDGRTPLHHAAENG 114
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ ++L+++ + + DQ G PLHLAA++G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNAHDDQ-GSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A + G PLHLAA G L ++ L++ + D G H A G
Sbjct: 72 DVNA---RDTDGWTPLHLAADNGHLEIVEVLLK-YGADVNAQDAYGLTPLHLAADRGHLE 127
Query: 356 TVELLLKSPSLGNLVNEKNDDGNTPL 381
VE+LLK G VN ++ G T
Sbjct: 128 IVEVLLKH---GADVNAQDKFGKTAF 150
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+ +G T LH+AA GH +IV+ L+ + D + T LH A
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW----------------TPLHLA 87
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNA-GETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
+++V++L K + +A +A G TPL+LAA+RG++ +VE ++
Sbjct: 88 ADNGHLEIVEVLLKYGADV--NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF 145
Query: 239 GRTA 242
G+TA
Sbjct: 146 GKTA 149
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + ++ T LH A ++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMT 255
+ + G TPL+LAA+ G++ +VE ++ G T H AA E+
Sbjct: 71 ADVNA-RDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIV 129
Query: 256 KVLL 259
+VLL
Sbjct: 130 EVLL 133
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 240 RTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299
RTA H A TE+ + LL G + D GW PLH+AA G+ +VK LL K A
Sbjct: 41 RTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALL--GKGA 97
Query: 300 AYKA-NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358
A N G PLH AA R + + ++ ++ + D H A G+ + +
Sbjct: 98 QVNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 156
Query: 359 LLLKSPSLGNLVNEKNDDGNTPL 381
+LL + N+ ++ +GNTPL
Sbjct: 157 ILLYYKASTNI---QDTEGNTPL 176
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 281 AYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIR-SCPSSCELVDD 339
AY GK +KE + ADKS A + + + LH A G ++ L++ P + + DD
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--DD 71
Query: 340 RGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
GW+ H A +G V+ LL G VN N +G TPL
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGK---GAQVNAVNQNGCTPL 110
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 195 DPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEM 254
D SL + T L+ A G+ +VE ++ D G + H AA E+
Sbjct: 29 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 88
Query: 255 TKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA----DKSAAYKANNKGKIP 310
K LL KG + +Q+G PLH AA +H + LL+ D Y+A
Sbjct: 89 VKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT-----A 142
Query: 311 LHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLV 370
+H AA G L + L+ +S + D G H A +LL+ S G +
Sbjct: 143 MHRAAAKGNLKMIHILLYY-KASTNIQDTEGNTPLHLACDEERVEEAKLLV---SQGASI 198
Query: 371 NEKNDDGNTPL 381
+N + TPL
Sbjct: 199 YIENKEEKTPL 209
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 115 LLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDT 174
L + + T LH A GH +IV+ L L LG KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 175 A----LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK 230
A LH A + ++VK L + + N G TPL+ AA + + ++
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 231 SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVK 290
+P TA H AA + +M +LL K + T+ D G PLHLA + K
Sbjct: 131 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAK 189
Query: 291 ELLKADKSAAYKANNKGKIPLHLA 314
LL + ++ Y N + K PL +A
Sbjct: 190 -LLVSQGASIYIENKEEKTPLQVA 212
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 240 RTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299
RTA H A TE+ + LL G + D GW PLH+AA G+ +VK LL K A
Sbjct: 42 RTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALL--GKGA 98
Query: 300 AYKA-NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358
A N G PLH AA R + + ++ ++ + D H A G+ + +
Sbjct: 99 QVNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIH 157
Query: 359 LLLKSPSLGNLVNEKNDDGNTPL 381
+LL + N+ ++ +GNTPL
Sbjct: 158 ILLYYKASTNI---QDTEGNTPL 177
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 281 AYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIR-SCPSSCELVDD 339
AY GK +KE + ADKS A + + + LH A G ++ L++ P + + DD
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--DD 72
Query: 340 RGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
GW+ H A +G V+ LL G VN N +G TPL
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGK---GAQVNAVNQNGCTPL 111
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 195 DPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEM 254
D SL + T L+ A G+ +VE ++ D G + H AA E+
Sbjct: 30 DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI 89
Query: 255 TKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA----DKSAAYKANNKGKIP 310
K LL KG + +Q+G PLH AA +H + LL+ D Y+A
Sbjct: 90 VKALL-GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEAT-----A 143
Query: 311 LHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLV 370
+H AA G L + L+ +S + D G H A +LL+ S G +
Sbjct: 144 MHRAAAKGNLKMIHILLYY-KASTNIQDTEGNTPLHLACDEERVEEAKLLV---SQGASI 199
Query: 371 NEKNDDGNTPL 381
+N + TPL
Sbjct: 200 YIENKEEKTPL 210
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 27/204 (13%)
Query: 115 LLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDT 174
L + + T LH A GH +IV+ L L LG KD
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 72
Query: 175 A----LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK 230
A LH A + ++VK L + + N G TPL+ AA + + ++
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 231 SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVK 290
+P TA H AA + +M +LL K + T+ D G PLHLA + K
Sbjct: 132 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAK 190
Query: 291 ELLKADKSAAYKANNKGKIPLHLA 314
LL + ++ Y N + K PL +A
Sbjct: 191 -LLVSQGASIYIENKEEKTPLQVA 213
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 68/143 (47%), Gaps = 8/143 (5%)
Query: 240 RTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299
RTA H A TE+ + LL G + D GW PLH+AA G+ +VK LL K A
Sbjct: 41 RTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLV--KGA 97
Query: 300 AYKA-NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358
A N G PLH AA R + + ++ ++ + D H A G+ + V
Sbjct: 98 HVNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 359 LLLKSPSLGNLVNEKNDDGNTPL 381
+LL + N+ ++ +GNTPL
Sbjct: 157 ILLFYKASTNI---QDTEGNTPL 176
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 281 AYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIR-SCPSSCELVDD 339
AY GK +KE + ADKS A + + + LH A G ++ L++ P + + DD
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--DD 71
Query: 340 RGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
GW+ H A +G V+ LL G VN N +G TPL
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVK---GAHVNAVNQNGCTPL 110
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 6/198 (3%)
Query: 184 QVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTAS 243
++D +K D SL + T L+ A G+ +VE ++ D G +
Sbjct: 18 KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL 77
Query: 244 HAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKA 303
H AA E+ K LL KG + +Q+G PLH AA +H + LL+ + K
Sbjct: 78 HIAASAGRDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK- 135
Query: 304 NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKS 363
++ +H AA G L M ++ +S + D G H A + L+
Sbjct: 136 DHYDATAMHRAAAKGNLK-MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-- 192
Query: 364 PSLGNLVNEKNDDGNTPL 381
+ G + +N + TPL
Sbjct: 193 -TQGASIYIENKEEKTPL 209
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 80/204 (39%), Gaps = 27/204 (13%)
Query: 115 LLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDT 174
L + + T LH A GH +IV+ L L LG KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 175 A----LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK 230
A LH A + ++VK L + + N G TPL+ AA + + ++
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 231 SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVK 290
+P TA H AA + +M +LL K + T+ D G PLHLA + K
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAK 189
Query: 291 ELLKADKSAAYKANNKGKIPLHLA 314
L ++ Y N + K PL +A
Sbjct: 190 -FLVTQGASIYIENKEEKTPLQVA 212
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 72/156 (46%), Gaps = 9/156 (5%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + +N G TPL+LAA G++ +VE ++
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNA-VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
G T H AA E+ +VLL G + D G PLHLAA G +V+ LLK
Sbjct: 77 DVYGFTPLHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK- 134
Query: 296 DKSAAYKANNK-GKIPLHLAALMGRLNTMQELIRSC 330
A A +K GK ++ G ++L +SC
Sbjct: 135 -YGADVNAQDKFGKTAFDISIDNGN----EDLAKSC 165
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 292 LLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHS 351
+L A+ + +N G PLHLAA+ G L ++ L++ + + D G+ H A +
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH-GADVDAADVYGFTPLHLAAMT 90
Query: 352 GSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
G VE+LLK G VN + G+TPL
Sbjct: 91 GHLEIVEVLLK---YGADVNAFDMTGSTPL 117
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+ G T LH+AA GH +IV+ L+ H D V+AA + T LH A
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLL-----KHGAD----VDAADVY-------GFTPLHLA 87
Query: 180 VRYNQVDVVKMLTKEDPSL-PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM 238
+++V++L K + +D G TPL+LAA+ G++ +VE ++
Sbjct: 88 AMTGHLEIVEVLLKYGADVNAFDMT--GSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF 145
Query: 239 GRTA 242
G+TA
Sbjct: 146 GKTA 149
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 70/146 (47%), Gaps = 11/146 (7%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L + G + D +G PLHLAA +G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A + G PLHLAA G L ++ L++ + D G H A +G
Sbjct: 72 DVNA---LDFSGSTPLHLAAKRGHLEIVEVLLK-YGADVNADDTIGSTPLHLAADTGHLE 127
Query: 356 TVELLLKSPSLGNLVNEKNDDGNTPL 381
VE+LLK G VN ++ G T
Sbjct: 128 IVEVLLK---YGADVNAQDKFGKTAF 150
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 17/123 (13%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+T G+T LH+AAR GH +IV+ L+ + G + L + T LH A
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLL-----------KNGADVNALDFSGS-----TPLHLA 87
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMG 239
+ +++V++L K + D + G TPL+LAA+ G++ +VE ++ G
Sbjct: 88 AKRGHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 240 RTA 242
+TA
Sbjct: 147 KTA 149
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + + DT LH A R +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMT 255
+ + +G TPL+LAA+RG++ +VE ++ +G T H AA E+
Sbjct: 71 ADVNA-LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIV 129
Query: 256 KVLL 259
+VLL
Sbjct: 130 EVLL 133
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKS 298
GRT H AA E+ +VLL + G + D +G PLHLAA LG +V+ LLK
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRN-GADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 299 AAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358
K + G PL+LAA G L ++ L++ + D G F ++ G+ E
Sbjct: 94 VNAK-DATGITPLYLAAYWGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDIGNEDLAE 151
Query: 359 LL 360
+L
Sbjct: 152 IL 153
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 18/133 (13%)
Query: 292 LLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHS 351
+L A+ + A ++ G+ PLH+AA +G L ++ L+R+ + VD G H A
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNG-ADVNAVDTNGTTPLHLAASL 78
Query: 352 GSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQSFVCHPKVDRLAFNHHNCS 411
G VE+LLK G VN K+ G TPL ++ ++ H ++ + H
Sbjct: 79 GHLEIVEVLLK---YGADVNAKDATGITPL--------YLAAYWGHLEIVEVLLKH---- 123
Query: 412 AEDIICSDKLLFG 424
D+ DK FG
Sbjct: 124 GADVNAQDK--FG 134
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T LH+AA GH +IV+ L+ + D GTT LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN----------GTT------PLHLAASL 78
Query: 183 NQVDVVKMLTKEDPSLPYDANNA-GETPLYLAAERGYINVVEDIISTCKSPADHGPMGRT 241
+++V++L K + +A +A G TPLYLAA G++ +VE ++ G+T
Sbjct: 79 GHLEIVEVLLKYGADV--NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKT 136
Query: 242 ASHAAAFCEDTEMTKVL 258
A + + ++ ++L
Sbjct: 137 AFDISIDIGNEDLAEIL 153
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 17/220 (7%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L +AV+ VD+V+ L + ++ + G TPL+ A + ++VE ++ P
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
G T AA ++ K+ L SKG ++ D +G+ AA GK +K L K
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFL-SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 147
Query: 296 DKSAAYKANNK---------GKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFH 346
+ + K G L AA G + ++ L+ + D+ G N
Sbjct: 148 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 207
Query: 347 FALHSGSRRTVE----LLLKSPSLGNLVNEKNDDGNTPLL 382
AL S VE LLL G VN + + G TPL+
Sbjct: 208 HALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLI 244
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 67/143 (46%), Gaps = 8/143 (5%)
Query: 240 RTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299
RTA H A TE+ + LL G + D GW PLH+AA G +VK LL K A
Sbjct: 41 RTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLV--KGA 97
Query: 300 AYKA-NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358
A N G PLH AA R + + ++ ++ + D H A G+ + V
Sbjct: 98 HVNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156
Query: 359 LLLKSPSLGNLVNEKNDDGNTPL 381
+LL + N+ ++ +GNTPL
Sbjct: 157 ILLFYKASTNI---QDTEGNTPL 176
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 281 AYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIR-SCPSSCELVDD 339
AY GK +KE + ADKS A + + + LH A G ++ L++ P + + DD
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--DD 71
Query: 340 RGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
GW+ H A +G V+ LL G VN N +G TPL
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVK---GAHVNAVNQNGCTPL 110
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 6/198 (3%)
Query: 184 QVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTAS 243
++D +K D SL + T L+ A G+ +VE ++ D G +
Sbjct: 18 KLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPL 77
Query: 244 HAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKA 303
H AA E+ K LL KG + +Q+G PLH AA +H + LL+ + K
Sbjct: 78 HIAASAGXDEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK- 135
Query: 304 NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKS 363
++ +H AA G L M ++ +S + D G H A + L+
Sbjct: 136 DHYDATAMHRAAAKGNLK-MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-- 192
Query: 364 PSLGNLVNEKNDDGNTPL 381
+ G + +N + TPL
Sbjct: 193 -TQGASIYIENKEEKTPL 209
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 79/204 (38%), Gaps = 27/204 (13%)
Query: 115 LLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDT 174
L + + T LH A GH +IV+ L L LG KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 175 A----LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK 230
A LH A ++VK L + + N G TPL+ AA + + ++
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 231 SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVK 290
+P TA H AA + +M +LL K + T+ D G PLHLA + K
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAK 189
Query: 291 ELLKADKSAAYKANNKGKIPLHLA 314
L ++ Y N + K PL +A
Sbjct: 190 -FLVTQGASIYIENKEEKTPLQVA 212
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L + G + D+ G PLHLAA +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A +N G PLHLAAL G L ++ L++ + D G F ++ +G+
Sbjct: 72 DVNAH---DNDGSTPLHLAALFGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNED 127
Query: 356 TVELLLK 362
E+L K
Sbjct: 128 LAEILQK 134
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G+ LL AAR G D V+ L+A + ND KG +T LH A Y
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNAND-RKG---------------NTPLHLAADY 57
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+ +++V++L K + +N G TPL+LAA G++ +VE ++ G+TA
Sbjct: 58 DHLEIVEVLLKHGADVNA-HDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTA 116
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANN-AGETPLYLAAERGYINVVEDIISTCKSPAD 234
L EA R Q D V++L + +AN+ G TPL+LAA+ ++ +VE ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA 75
Query: 235 HGPMGRTASHAAAFCEDTEMTKVLL 259
H G T H AA E+ +VLL
Sbjct: 76 HDNDGSTPLHLAALFGHLEIVEVLL 100
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 17/220 (7%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L +AV+ VD+V+ L + ++ + G TPL+ A + ++VE ++ P
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
G T AA ++ K+ L SKG ++ D +G+ AA GK +K L K
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFL-SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR 127
Query: 296 DKSAAYKANNK---------GKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFH 346
+ + K G L AA G + ++ L+ + D+ G N
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 187
Query: 347 FALHSGSRRTVE----LLLKSPSLGNLVNEKNDDGNTPLL 382
AL S VE LLL G VN + + G TPL+
Sbjct: 188 HALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLI 224
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L + G + D+ G PLHLAA LG +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A +N G PLHLAA+ G L ++ L++ + D G F ++ +G+
Sbjct: 72 DVNA---EDNFGITPLHLAAIRGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNED 127
Query: 356 TVELLLK 362
E+L K
Sbjct: 128 LAEILQK 134
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + +E T LH A + +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+ + +N G TPL+LAA RG++ +VE ++ G+TA
Sbjct: 71 ADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTA 116
Score = 33.9 bits (76), Expect = 0.16, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + + G TPL+LAA+ G++ +VE ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLL 259
G T H AA E+ +VLL
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLL 100
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ +L++ G + D G PLHLAA LG +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A N G+ PLHLAA L ++ L++ + D G F ++ +G+
Sbjct: 72 DVNA---TGNTGRTPLHLAAWADHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNED 127
Query: 356 TVELLLK 362
E+L K
Sbjct: 128 LAEILQK 134
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNA-GETPLYLAAERGYINVVEDIISTCKSPAD 234
L EA R Q D V++LT + +AN+ G TPL+LAA G++ +VE ++
Sbjct: 18 LLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 235 HGPMGRTASHAAAFCEDTEMTKVLL 259
G GRT H AA+ + E+ +VLL
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLL 100
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + + T LH A +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+ N G TPL+LAA ++ +VE ++ G+TA
Sbjct: 71 ADVNA-TGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTA 116
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 23/181 (12%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G++ LH+A H + ++I + V+ L N + T LH AV
Sbjct: 5 GDSFLHLAIIHEEKALTMEVI------------RQVKGDLAFLNFQNNLQQTPLHLAVIT 52
Query: 183 NQVDVVKMLTKE--DPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM-- 238
NQ ++ + L DP L + G TPL+LA E+G + V + +C +P H +
Sbjct: 53 NQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 109
Query: 239 ----GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
G T H A+ + ++L+S + ++ +G LHLA L +V LLK
Sbjct: 110 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Query: 295 A 295
Sbjct: 170 C 170
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 13/152 (8%)
Query: 239 GRTASHAAAFCEDTEMT-KVLLSSKGTLTSKPDQHGW--LPLHLAAYLGKHYVVKELLKA 295
G + H A E+ +T +V+ KG L Q+ PLHLA + + + LL A
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 64
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCP-----SSCELVDDRGWNVFHFALH 350
+ + +G PLHLA G L ++ L +SC S + + G H A
Sbjct: 65 GCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 123
Query: 351 SGSRRTVELLLKSPSLGNLVNEKND-DGNTPL 381
G VELL+ SLG VN + +G T L
Sbjct: 124 HGYLGIVELLV---SLGADVNAQEPCNGRTAL 152
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 116 LLKA-NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDT 174
+LKA N G T LH+A+ HG+ IV+ L++ + +P G T
Sbjct: 106 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------------RT 150
Query: 175 ALHEAVRYNQVDVVKMLTK 193
ALH AV D+V +L K
Sbjct: 151 ALHLAVDLQNPDLVSLLLK 169
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 46/159 (28%)
Query: 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVR 181
+G T LH+A G V L C PH + ++ +A
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLH----------------------SILKATN 111
Query: 182 YNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM-GR 240
YN G T L+LA+ GY+ +VE ++S P GR
Sbjct: 112 YN----------------------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR 149
Query: 241 TASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHL 279
TA H A ++ ++ +LL G ++ G+ P L
Sbjct: 150 TALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQL 187
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G++ LH+A H + ++I + V+ L N + T LH AV
Sbjct: 8 GDSFLHLAIIHEEKALTMEVI------------RQVKGDLAFLNFQNNLQQTPLHLAVIT 55
Query: 183 NQVDVVKMLTKE--DPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM-- 238
NQ ++ + L DP L + G TPL+LA E+G + V + +C +P H +
Sbjct: 56 NQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112
Query: 239 ----GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
G T H A+ + ++L+S + ++ +G LHLA L +V LLK
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Query: 295 ADKSAAYKANNKGKIPLHL 313
+ +G P L
Sbjct: 173 CGADVN-RVTYQGYSPYQL 190
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 12/143 (8%)
Query: 239 GRTASHAAAFCEDTEMT-KVLLSSKGTLTSKPDQHGW--LPLHLAAYLGKHYVVKELLKA 295
G + H A E+ +T +V+ KG L Q+ PLHLA + + + LL A
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCP-----SSCELVDDRGWNVFHFALH 350
+ + +G PLHLA G L ++ L +SC S + + G H A
Sbjct: 68 GCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126
Query: 351 SGSRRTVELLLKSPSLGNLVNEK 373
G VELL+ SLG VN +
Sbjct: 127 HGYLGIVELLV---SLGADVNAQ 146
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 16/79 (20%)
Query: 116 LLKA-NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDT 174
+LKA N G T LH+A+ HG+ IV+ L++ + +P G T
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------------RT 153
Query: 175 ALHEAVRYNQVDVVKMLTK 193
ALH AV D+V +L K
Sbjct: 154 ALHLAVDLQNPDLVSLLLK 172
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 57/159 (35%), Gaps = 46/159 (28%)
Query: 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVR 181
+G T LH+A G V L C PH + ++ +A
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLH----------------------SILKATN 114
Query: 182 YNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM-GR 240
YN G T L+LA+ GY+ +VE ++S P GR
Sbjct: 115 YN----------------------GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGR 152
Query: 241 TASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHL 279
TA H A ++ ++ +LL G ++ G+ P L
Sbjct: 153 TALHLAVDLQNPDLVSLLLKC-GADVNRVTYQGYSPYQL 190
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 83/210 (39%), Gaps = 37/210 (17%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKS 298
G TA H A ++ +M K L+ + G ++PD GW+PLH AA G + + E L + +
Sbjct: 73 GLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAASCG-YLDIAEYLISQGA 130
Query: 299 AAYKANNKGKIPLHLAALMGRLNTMQ----------ELIRSCPSSCELVDDRGW------ 342
N++G PL +A +Q E R L D R W
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI 190
Query: 343 ----------NVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGS--- 389
H A G ++LL+++ VN K+ DG TPL A G
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY---DVNIKDYDGWTPLHAAAHWGKEEA 247
Query: 390 ---FIQSFVCHPKVDRLAFNHHNCSAEDII 416
+++ V+++ + + EDI+
Sbjct: 248 CRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 235 HGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
H G TA H AA TE+ K+L+ ++ + K D GW PLH AA+ GK + L++
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEEACRILVE 253
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 12/191 (6%)
Query: 174 TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPA 233
TALH+A + VD+VK L + ++ +N G PL+ AA GY+++ E +IS
Sbjct: 75 TALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 234 DHGPMGRTASHAAAFCEDTEMTKVLLSSKGT-LTSKPDQHGWLPLHLAAYLGKHYVVKEL 292
G T A E+ + ++ +G + + + + L A ++
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDA---------RQW 184
Query: 293 LKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSG 352
L + + G LH+AA G ++ LI++ + D GW H A H G
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGWTPLHAAAHWG 243
Query: 353 SRRTVELLLKS 363
+L+++
Sbjct: 244 KEEACRILVEN 254
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ A +D E+ +L + G + D G PLHLAA G +V+ LLK A
Sbjct: 14 LGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A+ ++ G+ PLHLAA +G L + E++ + D G F ++ +G+
Sbjct: 72 DVNAS---DSWGRTPLHLAATVGHLEIV-EVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 356 TVELLLK 362
E+L K
Sbjct: 128 LAEILQK 134
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + ++AG TPL+LAA+RG++ +VE ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLL 259
GRT H AA E+ +VLL
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLL 100
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + ++A T LH A + +++V++L K
Sbjct: 12 SDLGKKLL-EATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+ +++ G TPL+LAA G++ +VE ++ G+TA
Sbjct: 71 ADVNA-SDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
+G+ AA +D E+ +L + G + D+ G PLHLAA + H + E+L +
Sbjct: 14 LGKKLLEAARAGQDDEVR--ILMANGADVNAEDKVGLTPLHLAA-MNDHLEIVEVLLKNG 70
Query: 298 SAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTV 357
+ + G+ PLHL A+ G L ++ L++ + D G F ++ +G+
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDLA 129
Query: 358 ELLLK 362
E+L K
Sbjct: 130 EILQK 134
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + + + G TPL+LAA ++ +VE ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLL 259
+G T H A E+ +VLL
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLL 100
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + ++ T LH A + +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 196 PSL-PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+ DA GETPL+L A G++ +VE ++ G+TA
Sbjct: 71 ADVNAIDA--IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTA 116
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 5/170 (2%)
Query: 176 LHEAVRYNQVDVVKMLTK--EDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPA 233
LH +V + ++ L E+ +L +++G TP ++A G + VV+ + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 234 DHGP--MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKE 291
+ G T H A + E+++ L+ + ++ K D+ +PLH AA +G +++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIEL 158
Query: 292 LLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRG 341
L KSA + +G PL A G + L+ + +LVD++G
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 70/190 (36%), Gaps = 37/190 (19%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSS--KGTLTSKPDQHGWLPLHLAAYLGKHYVVKEL---- 292
GR H + + E+T LLS L PD GW P H+A +G VVK L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 293 LKAD-----------------------------KSAAYKANNK-GKIPLHLAALMGRLNT 322
LK D A+ + +K +IPLH AA +G L
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 323 MQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL-KSPSLGNLVNEKNDDGNTPL 381
++ L S+ D +GW AL G LL+ K + +LV+ K
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Query: 382 LEHAVSGSFI 391
L V F+
Sbjct: 216 LNEQVKKFFL 225
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 276 PLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCE 335
PLH A + + V+ELL + S + + G+IPLH + E+ S E
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF----QAHEITSFLLSKME 60
Query: 336 LV------DDRGWNVFHFALHSGSRRTVELLLKSP 364
V DD GW FH A G+ V+ L P
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 310 PLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNL 369
PLH A + +QEL+ S PS D G H+++ + LL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 370 VNEKNDDGNTPL 381
+ +D G TP
Sbjct: 65 DDYPDDSGWTPF 76
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T HIA G+ ++VK L KP N TN+ T LH AV
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-------------ITNQGV-TCLHLAVGK 117
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPAD 234
+V + L + S+ + + PL+ AA G + ++E + KS +
Sbjct: 118 KWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 7/171 (4%)
Query: 176 LHEAVRYNQVDVVKMLTK--EDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPA 233
LH +V + ++ L E+ +L +++G TP ++A G + VV+ + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP- 98
Query: 234 DHGPM---GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVK 290
D + G T H A + E+++ L+ + ++ K D+ +PLH AA +G +++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIE 157
Query: 291 ELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRG 341
L KSA + +G PL A G + L+ + +LVD++G
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 72/194 (37%), Gaps = 37/194 (19%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSS--KGTLTSKPDQHGWLPLHLAAYLGKHYVVKEL---- 292
GR H + + E+T LLS L PD GW P H+A +G VVK L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 293 LKAD-----------------------------KSAAYKANNK-GKIPLHLAALMGRLNT 322
LK D A+ + +K +IPLH AA +G L
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 323 MQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL-KSPSLGNLVNEKNDDGNTPL 381
++ L S+ D +GW AL G LL+ K + +LV+ K
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Query: 382 LEHAVSGSFIQSFV 395
L V F+ + V
Sbjct: 216 LNEQVKKFFLNNVV 229
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 276 PLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCE 335
PLH A + + V+ELL + S + + G+IPLH + E+ S E
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF----QAHEITSFLLSKME 60
Query: 336 LV------DDRGWNVFHFALHSGSRRTVELLLKSP 364
V DD GW FH A G+ V+ L P
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 310 PLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNL 369
PLH A + +QEL+ S PS D G H+++ + LL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 370 VNEKNDDGNTPL 381
+ +D G TP
Sbjct: 65 DDYPDDSGWTPF 76
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T HIA G+ ++VK L KP N TN+ T LH AV
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-------------ITNQGV-TCLHLAVGK 117
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPAD 234
+V + L + S+ + + PL+ AA G + ++E + KS +
Sbjct: 118 KWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 76/203 (37%), Gaps = 42/203 (20%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSS--KGTLTSKPDQHGWLPLHLAAYLGKHYVVKEL---- 292
GR H + + E+T LLS L PD GW P H+A +G VVK L
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Query: 293 LKAD-----------------------------KSAAYKANNK-GKIPLHLAALMGRLNT 322
LK D A+ + +K +IPLH AA +G L
Sbjct: 96 LKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 323 MQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL-KSPSLGNLVNEKNDDGNTPL 381
++ L S+ D +GW AL G LL+ K + +LV+ K
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215
Query: 382 LEHAVSGSFIQSFVCHPKVDRLA 404
L V F+ + VD+LA
Sbjct: 216 LNEQVKKFFLNNV-----VDKLA 233
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 80/171 (46%), Gaps = 7/171 (4%)
Query: 176 LHEAVRYNQVDVVKMLTK--EDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPA 233
LH +V + ++ L E+ +L +++G TP ++A G + VV+ + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP- 98
Query: 234 DHGPM---GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVK 290
D + G T H A + E+++ L+ + ++ K D+ +PLH AA +G +++
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIE 157
Query: 291 ELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRG 341
L KSA + +G PL A G + L+ + +LVD++G
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 276 PLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCE 335
PLH A + + V+ELL + S + + G+IPLH + E+ S E
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF----QAHEITSFLLSKME 60
Query: 336 LV------DDRGWNVFHFALHSGSRRTVELLLKSP 364
V DD GW FH A G+ V+ L P
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 310 PLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNL 369
PLH A + +QEL+ S PS D G H+++ + LL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 370 VNEKNDDGNTPL 381
+ +D G TP
Sbjct: 65 DDYPDDSGWTPF 76
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T HIA G+ ++VK L KP N TN+ T LH AV
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-------------ITNQGV-TCLHLAVGK 117
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPAD 234
+V + L + S+ + + PL+ AA G + ++E + KS +
Sbjct: 118 KWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN 168
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ A +D E+ +L + G + D G PLHLAA G +V+ LLK A
Sbjct: 14 LGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A ++ G+ PLHLAA +G L + E++ + D G F ++ +G+
Sbjct: 72 DVNA---SDIWGRTPLHLAATVGHLEIV-EVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 356 TVELLLK 362
E+L K
Sbjct: 128 LAEILQK 134
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + ++AG TPL+LAA+RG++ +VE ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLL 259
GRT H AA E+ +VLL
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLL 100
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + ++A T LH A + +++V++L K
Sbjct: 12 SDLGKKLL-EATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+ ++ G TPL+LAA G++ +VE ++ G+TA
Sbjct: 71 ADVNA-SDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + ++AG TPL+LAA+RG++ +VE ++
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLL 259
GRT H AA E+ +VLL
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLL 100
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ A +D E+ +L + G + D G PLHLAA G +V+ LLK A
Sbjct: 14 LGKKLLEATRAGQDDEVR--ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A + G+ PLHLAA +G L + E++ + D G F ++ +G+
Sbjct: 72 DVNA---RDIWGRTPLHLAATVGHLEIV-EVLLEYGADVNAQDKFGKTAFDISIDNGNED 127
Query: 356 TVELLLK 362
E+L K
Sbjct: 128 LAEILQK 134
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 2/107 (1%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + ++A T LH A + +++V++L K
Sbjct: 12 SDLGKKLL-EATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+ + G TPL+LAA G++ +VE ++ G+TA
Sbjct: 71 ADVNA-RDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAA 246
V+ L + L + GET L+LAA + + ++ GRT HAA
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 247 AFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNK 306
+ + ++LL ++ T + G PL LAA L +V++L+ AD A+N
Sbjct: 92 VAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADNS 150
Query: 307 GKIPLHLAA 315
GK LH AA
Sbjct: 151 GKTALHWAA 159
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 94 LKKQSSSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQND 153
++ S+ + +L L + GET LH+AAR AD K L+
Sbjct: 22 IENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLL---------- 71
Query: 154 PEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLA 213
+ G +A + + T LH AV + + V ++L + + + G TPL LA
Sbjct: 72 -DAGADA-----NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA 125
Query: 214 AERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHG 273
A +VED+I+ G+TA H AA +TE +LL ++ D+
Sbjct: 126 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKD- 184
Query: 274 WLPLHLAAYLGKHYVVKELL 293
PL LAA G + K LL
Sbjct: 185 ETPLFLAAREGSYEASKALL 204
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 255 TKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGK-IPLHL 313
++ L + ++ D HG+ PLH A G+ VV+ L+ + A N+G PLHL
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHL 78
Query: 314 AALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEK 373
AA G + +Q+L++ + V++ G H+A G + E L+ + +L ++ N+
Sbjct: 79 AASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 137
Query: 374 N----DDGNTPLLE 383
D PL E
Sbjct: 138 GEMPVDKAKAPLRE 151
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 23/184 (12%)
Query: 134 GHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTT----NEAKD---TALHEAVRYNQVD 186
G + + D+ +C+ E A RL L T N+ D + LH A R +
Sbjct: 1 GSPEFMDDIFTQCR-------EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA 53
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAA 246
VV+ML + N +TPL+LAA G+ ++V+ ++ G H A
Sbjct: 54 VVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112
Query: 247 AFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNK 306
F ++ + L+++ G L S +++G +P+ A ++ELL+ + A N
Sbjct: 113 CFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAK-----APLRELLR--ERAEKMGQNL 164
Query: 307 GKIP 310
+IP
Sbjct: 165 NRIP 168
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
N +T LH+AA HGH DIV+ L+ + + NE + LH A
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLL----------------QYKADINAVNEHGNVPLHYA 112
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPL 210
+ Q V + L + +L N GE P+
Sbjct: 113 CFWGQDQVAEDLVA-NGALVSICNKYGEMPV 142
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 338 DDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSG--SFIQSFV 395
DD G++ H+A G VE+L+ + N++N +D TPL A G +Q +
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLL 92
Query: 396 CHPKVDRLAFNHH 408
+ K D A N H
Sbjct: 93 QY-KADINAVNEH 104
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 255 TKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGK-IPLHL 313
++ L + ++ D HG+ PLH A G+ VV+ L+ + A N+G PLHL
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLHL 73
Query: 314 AALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEK 373
AA G + +Q+L++ + V++ G H+A G + E L+ + +L ++ N+
Sbjct: 74 AASHGHRDIVQKLLQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY 132
Query: 374 N----DDGNTPLLE 383
D PL E
Sbjct: 133 GEMPVDKAKAPLRE 146
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 23/179 (12%)
Query: 139 VKDLIAECKKPHQNDPEKGVEAARLMLGTT----NEAKD---TALHEAVRYNQVDVVKML 191
+ D+ +C+ E A RL L T N+ D + LH A R + VV+ML
Sbjct: 1 MDDIFTQCR-------EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 53
Query: 192 TKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCED 251
+ N +TPL+LAA G+ ++V+ ++ G H A F
Sbjct: 54 IMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
Query: 252 TEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIP 310
++ + L+++ G L S +++G +P+ A ++ELL+ + A N +IP
Sbjct: 113 DQVAEDLVAN-GALVSICNKYGEMPVDKAK-----APLRELLR--ERAEKMGQNLNRIP 163
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 17/91 (18%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
N +T LH+AA HGH DIV+ L+ + + NE + LH A
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLL----------------QYKADINAVNEHGNVPLHYA 107
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPL 210
+ Q V + L + +L N GE P+
Sbjct: 108 CFWGQDQVAEDLVA-NGALVSICNKYGEMPV 137
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 338 DDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSG--SFIQSFV 395
DD G++ H+A G VE+L+ + N++N +D TPL A G +Q +
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD---TPLHLAASHGHRDIVQKLL 87
Query: 396 CHPKVDRLAFNHH 408
+ K D A N H
Sbjct: 88 QY-KADINAVNEH 99
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 8/167 (4%)
Query: 165 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVED 224
+G+ N D L EA + V+ VK L D TPL+ AA ++VVE
Sbjct: 3 MGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 62
Query: 225 IISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLG 284
++ G H A E+ + LL G + + D + PLH AA G
Sbjct: 63 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 285 KHYVVKELLK--ADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRS 329
K+ + K LL+ AD + K N G PL L + +Q+L+R
Sbjct: 122 KYEICKLLLQHGADPT---KKNRDGNTPLDL--VKDGDTDIQDLLRG 163
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 236 GPMGRTASHA------AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVV 289
G MG S A AA D E K L + + + PLH AA + VV
Sbjct: 1 GAMGSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV 60
Query: 290 KELLKADKSAAYKANNKGK-IPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFA 348
+ LL+ A A +KG +PLH A G + L++ + + D + H A
Sbjct: 61 EYLLQ--HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEA 117
Query: 349 LHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
G +LLL+ G +KN DGNTPL
Sbjct: 118 AAKGKYEICKLLLQH---GADPTKKNRDGNTPL 147
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--A 295
+G+ AA +D E+ ++L+++ + +K D++G PL+LA G +V+ LLK A
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGA 71
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRR 355
D +A + G PLHLAA +G L + L++ + D G F ++ +G+
Sbjct: 72 DVNA---VDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNED 127
Query: 356 TVELLLK 362
E+L K
Sbjct: 128 LAEILQK 134
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + + G TPLYLA G++ +VE ++
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 236 GPMGRTASHAAAFCEDTEMTKVLL 259
+G T H AAF E+ +VLL
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLL 100
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 136 ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195
+D+ K L+ E + Q+D + + A + +E T L+ A + +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 196 PSLPYDANNA-GETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
+ +A +A G TPL+LAA G++ + E ++ G+TA
Sbjct: 71 ADV--NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Query: 174 TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPA 233
T LH A N++D+VK + + + TPL+ A +G++++V ++ P+
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 234 DHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYV--VKE 291
G + H AA T + L+ +KG DQ+G PL AAY H V +
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLI-AKGQDVDMMDQNGMTPLMWAAYR-THSVDPTRL 161
Query: 292 LLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRS 329
LL + S LH A L G + L+ +
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 28/217 (12%)
Query: 107 GILEMCPGLL------LKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEA 160
GI E C L+ + + + TLLH AA + D+VK I+ KG
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-----------KGAIV 68
Query: 161 ARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTK--EDPSLPYDANNAGETPLYLAAERGY 218
+L + T LH A R + +V L K DPSL + G + ++LAA+ G+
Sbjct: 69 DQL----GGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGH 121
Query: 219 INVVEDIISTCKSPADHGPMGRTASHAAAF-CEDTEMTKVLLSSKGTLTSKPDQHGWLPL 277
++V +I+ + G T AA+ + T++LL+ ++ H L
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL 181
Query: 278 HLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLA 314
H A G V+ LL+A + + N KG+ L LA
Sbjct: 182 HWAVLAGNTTVISLLLEAGANVDAQ-NIKGESALDLA 217
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 24/116 (20%)
Query: 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEK------------GVEAARLMLGTTN 169
+G + +H+AA+ GH IV LIA+ + D V+ RL+L T N
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL-TFN 166
Query: 170 EA--------KDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNA-GETPLYLAAER 216
+ K+TALH AV V+ +L + ++ DA N GE+ L LA +R
Sbjct: 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDLAKQR 220
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 5/152 (3%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKS 298
G TA H AA ++ K LL + + D G PLH A V + LL+ +
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQ-DNMGRTPLHAAVSADAQGVFQILLRNRAT 80
Query: 299 AAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358
+ G PL LAA + +++LI S + VDD G + H+A +
Sbjct: 81 DLDARMHDGTTPLILAARLALEGMLEDLINS-HADVNAVDDLGKSALHWAAAVNNVDAAV 139
Query: 359 LLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSF 390
+LLK+ + ++ N K + TPL A GS+
Sbjct: 140 VLLKNGANKDMQNNKEE---TPLFLAAREGSY 168
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 80/177 (45%), Gaps = 6/177 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAA 246
V+ + SL + GET L+LAA + + ++ MGRT HAA
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 247 AFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--ADKSAAYKAN 304
+ + ++LL ++ T G PL LAA L ++++L+ AD +A +
Sbjct: 63 VSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA---VD 119
Query: 305 NKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL 361
+ GK LH AA + ++ L+++ + ++ +++ A GS T ++LL
Sbjct: 120 DLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNKEETPLFLAAREGSYETAKVLL 175
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 118 KANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALH 177
+ + GET LH+AAR+ +D K L+ D +G T LH
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDN----------MGR------TPLH 60
Query: 178 EAVRYNQVDVVKMLTKEDPSLPYDAN-NAGETPLYLAAERGYINVVEDIISTCKSPADHG 236
AV + V ++L + + + DA + G TPL LAA ++ED+I++
Sbjct: 61 AAVSADAQGVFQILLR-NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD 119
Query: 237 PMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELL 293
+G++A H AA + + VLL + G + PL LAA G + K LL
Sbjct: 120 DLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 6/162 (3%)
Query: 168 TNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIS 227
T+ +TALH A RY++ D K L + +N G TPL+ A V + ++
Sbjct: 18 TDRTGETALHLAARYSRSDAAKRLLEASADAXI-QDNMGRTPLHAAVSADAQGVFQILLR 76
Query: 228 TCKSPADHGPM--GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGK 285
+ D M G T AA M + L++S + + D G LH AA +
Sbjct: 77 NRATDLD-ARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNN 134
Query: 286 HYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELI 327
LLK + + NNK + PL LAA G T + L+
Sbjct: 135 VDAAVVLLKNGANKDMQ-NNKEETPLFLAAREGSYETAKVLL 175
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAA 246
V+ + SL + GET L+LAA + + ++ MGRT HAA
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 247 AFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--ADKSAAYKAN 304
+ + ++L+ ++ T G PL LAA L ++++L+ AD +A +
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---VD 154
Query: 305 NKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL 361
+ GK LH AA + ++ L+++ ++ ++ ++R A GS T ++LL
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 118 KANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALH 177
+ + GET LH+AAR+ +D K L+ + D N + T LH
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQD---------------NMGR-TPLH 95
Query: 178 EAVRYNQVDVVKMLTKEDPSLPYDAN-NAGETPLYLAAERGYINVVEDIISTCKSPADHG 236
AV + V ++L + + + DA + G TPL LAA ++ED+I++
Sbjct: 96 AAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 237 PMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELL 293
+G++A H AA + + VLL + G + PL LAA G + K LL
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 4/85 (4%)
Query: 304 NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKS 363
N++G+ LH+A++ G + +++ L+++ S + D GW H A + G + VELLL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 364 PSLGNLVNEKNDDGNTPLLEHAVSG 388
+L N +ND +PL + A +G
Sbjct: 66 KALVNTTGYQND---SPLHDAAKNG 87
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 17/89 (19%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPE--------------KGVE---AAR 162
N +GETLLHIA+ G V+ L+ P+ D K VE +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 163 LMLGTTNEAKDTALHEAVRYNQVDVVKML 191
++ TT D+ LH+A + VD+VK+L
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKS 298
G T H A+ D + LL + G+ + D GW PLH A G H V ELL K+
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQN-GSDPNVKDHAGWTPLHEACNHG-HLKVVELLLQHKA 67
Query: 299 AAYKANNKGKIPLHLAALMGRLNTMQELI 327
+ PLH AA G ++ ++ L+
Sbjct: 68 LVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 203 NNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSK 262
N+ GET L++A+ +G I VE ++ P G T H A ++ ++LL K
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 263 GTLTSKPDQHGWLPLHLAAYLGKHYVVKELL 293
+ + Q+ PLH AA G +VK LL
Sbjct: 67 ALVNTTGYQNDS-PLHDAAKNGHVDIVKLLL 96
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 168 TNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIS 227
TN +T LH A + V+ L ++ S P ++AG TPL+ A G++ VVE ++
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64
Query: 228 TCKSPADHGPMGRTASHAAAFCEDTEMTKVLLS 260
G + H AA ++ K+LLS
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAA 246
V+ + SL + GET L+LAA + + ++ MGRT HAA
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
Query: 247 AFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--ADKSAAYKAN 304
+ + ++L+ ++ T G PL LAA L ++++L+ AD +A +
Sbjct: 99 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---VD 155
Query: 305 NKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL 361
+ GK LH AA + ++ L+++ ++ ++ ++R A GS T ++LL
Sbjct: 156 DLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 211
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 118 KANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALH 177
+ + GET LH+AAR+ +D K L+ + D N + T LH
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQD---------------NMGR-TPLH 96
Query: 178 EAVRYNQVDVVKMLTKEDPSLPYDAN-NAGETPLYLAAERGYINVVEDIISTCKSPADHG 236
AV + V ++L + + + DA + G TPL LAA ++ED+I++
Sbjct: 97 AAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 155
Query: 237 PMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELL 293
+G++A H AA + + VLL + G + PL LAA G + K LL
Sbjct: 156 DLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLL 211
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAA 246
V+ + SL + GET L+LAA + + ++ MGRT HAA
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 247 AFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--ADKSAAYKAN 304
+ + ++L+ ++ T G PL LAA L ++++L+ AD +A +
Sbjct: 66 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---VD 122
Query: 305 NKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL 361
+ GK LH AA + ++ L+++ ++ ++ ++R A GS T ++LL
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 178
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 19/177 (10%)
Query: 118 KANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALH 177
+ + GET LH+AAR+ +D K L+ + D N + T LH
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQD---------------NMGR-TPLH 63
Query: 178 EAVRYNQVDVVKMLTKEDPSLPYDAN-NAGETPLYLAAERGYINVVEDIISTCKSPADHG 236
AV + V ++L + + + DA + G TPL LAA ++ED+I++
Sbjct: 64 AAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 237 PMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELL 293
+G++A H AA + + VLL + G + PL LAA G + K LL
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAAREGSYETAKVLL 178
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 82/177 (46%), Gaps = 5/177 (2%)
Query: 158 VEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGE-TPLYLAAER 216
V A+ L + T++ + LH A + + D++ +L K + A NA + PL+LA ++
Sbjct: 72 VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN--AGARNADQAVPLHLACQQ 129
Query: 217 GYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLP 276
G+ VV+ ++ + P G T A E+ +LL ++ + ++ G
Sbjct: 130 GHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK-GNTA 188
Query: 277 LHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSS 333
LH A + KH V ELL ++ N + + + A ++ + +++ SC +S
Sbjct: 189 LH-EAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G + LH+AA HG AD++ L+ + G A G N + LH A +
Sbjct: 86 GSSPLHVAALHGRADLIPLLL-----------KHGANA-----GARNADQAVPLHLACQQ 129
Query: 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242
VVK L + P + +G TPL A G+ +V ++ S G TA
Sbjct: 130 GHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA 188
Query: 243 SHAAAFCEDTEMTKVLL 259
H A + + ++LL
Sbjct: 189 LHEAVIEKHVFVVELLL 205
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 18/125 (14%)
Query: 127 LHIAARHGHADIVKDLIAECKKPHQNDPEKGV-----------EAARLML------GTTN 169
LH+A + GH +VK L+ KP++ D E L+L +N
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 170 EAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTC 229
+TALHEAV V VV++L S+ N T + A + I + ++ +C
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQV-LNKRQRTAVDCAEQNSKIMELLQVVPSC 241
Query: 230 KSPAD 234
+ D
Sbjct: 242 VASLD 246
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 199 PYDANNAGETPLYL---AAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMT 255
P A A PL L AA G + VV+ + P+ G TA H A + +
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIV 70
Query: 256 KVLLSSKGTLTSKPDQHGWLPLHLAA 281
L+++ + S PD HGW PLH AA
Sbjct: 71 DFLITAGANVNS-PDSHGWTPLHCAA 95
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 176 LHEAVRYNQVDVVKMLTKE--DPSLPYDANNAGETPLYLAAERGYINVVEDIIST---CK 230
L +A +++VV+ KE DPS P N G T L+ A ++V+ +I+
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQP---NEEGITALHNAICGANYSIVDFLITAGANVN 81
Query: 231 SPADHGPMGRTASHAAAFCEDTEMTKVLL 259
SP HG T H AA C DT + L+
Sbjct: 82 SPDSHG---WTPLHCAASCNDTVICMALV 107
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 169 NEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIST 228
N D L EA + V+ VK L D TPL+ AA ++VVE ++
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64
Query: 229 CKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYV 288
G H A E+ + LL G + + D + PLH AA GK+ +
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 289 VKELLK--ADKSAAYKANNKGKIPLHL 313
K LL+ AD + K N G PL L
Sbjct: 124 CKLLLQHGADPT---KKNRDGNTPLDL 147
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 246 AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANN 305
AA D E K L + + + PLH AA + VV+ LL+ A A +
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGADVHAKD 72
Query: 306 KGK-IPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSP 364
KG +PLH A G + L++ + + D + H A G +LLL+
Sbjct: 73 KGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH- 130
Query: 365 SLGNLVNEKNDDGNTPL 381
G +KN DGNTPL
Sbjct: 131 --GADPTKKNRDGNTPL 145
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
GRTA H AA + + K L+ KG+ K D+ G P+ LAA G+ VV L++
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQ 334
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332
G LH AA + +VK L+ S K + GK P+ LAA GR+ + LI+ +
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQG-A 337
Query: 333 SCELVD 338
S E VD
Sbjct: 338 SVEAVD 343
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 174 TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKS 231
TALH A + + +VK L E S + G+TP+ LAA+ G I VV +I S
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 169 NEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIST 228
N D L EA + V+ VK L D TPL+ AA ++VVE ++
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 68
Query: 229 CKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYV 288
G H A E+ + LL G + + D + PLH AA GK+ +
Sbjct: 69 GADVHAKDKGGLVPLHNACSYGHYEVAE-LLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 127
Query: 289 VKELLK--ADKSAAYKANNKGKIPLHL 313
K LL+ AD + K N G PL L
Sbjct: 128 CKLLLQHGADPT---KKNRDGNTPLDL 151
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 246 AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANN 305
AA D E K L + + + PLH AA + VV+ LL+ A A +
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGADVHAKD 76
Query: 306 KGK-IPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSP 364
KG +PLH A G + L++ + + D + H A G +LLL+
Sbjct: 77 KGGLVPLHNACSYGHYEVAELLVKH-GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH- 134
Query: 365 SLGNLVNEKNDDGNTPL 381
G +KN DGNTPL
Sbjct: 135 --GADPTKKNRDGNTPL 149
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 206 GETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTL 265
G TPL+ AA+ G+ V+ ++S G T H AA E+ K+LL +KG
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGAD 67
Query: 266 TSKPDQHGWLPLHLAAYLGKHYVVKEL 292
+ + G P HLA G H +VK L
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 19/102 (18%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEA-ARLMLGTTNEAKDTALHEAVR 181
G T LH AA++GHA+ VK L++ KG + AR G +T LH A +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS-----------KGADVNARSKDG------NTPLHLAAK 51
Query: 182 YNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVE 223
++VK+L + + + + G TP +LA + G+ +V+
Sbjct: 52 NGHAEIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVK 92
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 307 GKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSL 366
G PLH AA G +++L+ S + G H A +G V+LLL +
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL---AK 64
Query: 367 GNLVNEKNDDGNTP 380
G VN ++ DGNTP
Sbjct: 65 GADVNARSKDGNTP 78
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 15/75 (20%)
Query: 111 MCPGLLLKANTK-GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEA-ARLMLGTT 168
+ G + A +K G T LH+AA++GHA+IVK L+A KG + AR G T
Sbjct: 29 LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA-----------KGADVNARSKDGNT 77
Query: 169 NE--AKDTALHEAVR 181
E AK HE V+
Sbjct: 78 PEHLAKKNGHHEIVK 92
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 276 PLHLAAYLGKHYVVKELLKADKSAAYKANNK-GKIPLHLAALMGRLNTMQELIRSCPSSC 334
PLH AA G VK+LL K A A +K G PLHLAA G ++ L+
Sbjct: 12 PLHNAAKNGHAEEVKKLL--SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69
Query: 335 ELVDDRGWNVFHFALHSGSRRTVELL 360
D G H A +G V+LL
Sbjct: 70 ARSKD-GNTPEHLAKKNGHHEIVKLL 94
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
+G+ AA +D E+ ++L+++ T+ D G PLHLAA G + LL+A
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGAPFTT--DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 298 SAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTV 357
S + + PLH+AA G N ++ L++ + D H+A + V
Sbjct: 59 SRDAR-TKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEVV 116
Query: 358 ELLLK 362
ELL+K
Sbjct: 117 ELLIK 121
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L P+ + G +PL+LAA+ G+ + E ++ S
Sbjct: 6 LLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
+ RT H AA + +VLL + +K D LH A VV+ L+K
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIK 121
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 17/92 (18%)
Query: 103 HFVRGILEMCPGLLLKANTKGE-TLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAA 161
HF + + G+ A TK + T LH+AA GHA+IV+ L+ H D A
Sbjct: 46 HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-----KHGADVN-----A 95
Query: 162 RLMLGTTNEAKDTALHEAVRYNQVDVVKMLTK 193
+ ML K TALH A +N +VV++L K
Sbjct: 96 KDML------KMTALHWATEHNHQEVVELLIK 121
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 6/177 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAA 246
V+ + SL + G T L+LAA + + ++ MGRT HAA
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 247 AFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK--ADKSAAYKAN 304
+ + ++L+ ++ T G PL LAA L ++++L+ AD +A +
Sbjct: 98 VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---VD 154
Query: 305 NKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL 361
+ GK LH AA + ++ L+++ + ++ ++R A GS T ++LL
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 160 AARLML-GTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAA 214
A RL+L G + KD +H+A R Q+D ++ L + + + +N G PL+LAA
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAA 111
Query: 215 ERGYINVVEDIISTCKSPADH 235
+ G++ VVE ++ S H
Sbjct: 112 KEGHLRVVEFLVKHTASNVGH 132
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
Query: 213 AAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQH 272
AA RG + + ++ + GRTA ++LL +G D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL--RGANPDLKDRT 69
Query: 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332
G+ +H AA G+ ++ LL+ + +N+G +PLHLAA G L ++ L++ S
Sbjct: 70 GFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 333 SCELVDDRGWNVFHFALHSGSRRTVELL 360
+ + +G A G V L+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 217 GYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLP 276
G ++V+ II P+ G TA H A TE+ K L+ G + D GW P
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTP 106
Query: 277 LHLAAYLGKHYVVKELLKA 295
LH AA V K L+++
Sbjct: 107 LHCAASCNNVQVCKFLVES 125
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 17/103 (16%)
Query: 126 LLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQV 185
LL ++ G D+V+ +I E P N+ TALH AV
Sbjct: 40 LLLDSSLEGEFDLVQRIIYEVDDP----------------SLPNDEGITALHNAVCAGHT 83
Query: 186 DVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIST 228
++VK L + ++ A++ G TPL+ AA + V + ++ +
Sbjct: 84 EIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 217 GYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLP 276
G ++V+ II P+ G TA H A TE+ K L+ G + D GW P
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTP 106
Query: 277 LHLAAYLGKHYVVKELLKA 295
LH AA V K L+++
Sbjct: 107 LHCAASCNNVQVCKFLVES 125
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 17/115 (14%)
Query: 114 GLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKD 173
G+ +K N LL ++ G D+V+ +I E P N+
Sbjct: 28 GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDP----------------SLPNDEGI 71
Query: 174 TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIST 228
TALH AV ++VK L + ++ A++ G TPL+ AA + V + ++ +
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 64/148 (43%), Gaps = 3/148 (2%)
Query: 213 AAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQH 272
AA RG + + ++ + GRTA ++LL +G D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL--RGANPDLKDRT 69
Query: 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332
G+ +H AA G ++ LL+ +++ +N+G +PLHLAA G L ++ L++ S
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 333 SCELVDDRGWNVFHFALHSGSRRTVELL 360
+ + +G A G V L+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 160 AARLML-GTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAA 214
A RL+L G + KD +H+A R +D ++ L + + + +N G PL+LAA
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNLPLHLAA 111
Query: 215 ERGYINVVEDIISTCKSPADH 235
+ G++ VVE ++ S H
Sbjct: 112 KEGHLRVVEFLVKHTASNVGH 132
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%)
Query: 151 QNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPL 210
+N+ E E RL L N T LH AV + ++V++L L G TPL
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 211 YLAAERGYINVVEDIISTCKSPADHGPMGRT 241
+LA E +V+E ++ P GRT
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRT 227
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 77/222 (34%), Gaps = 54/222 (24%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
N G+T LH+AA G A V+ L A GV A TALH A
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGA---------GVLVA-------ERGGHTALHLA 85
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDII-STCKSPA--DHG 236
R +L + PS P DA++ Y+ +D T +PA D
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDT------------YLTQSQDCTPDTSHAPAAVDSQ 133
Query: 237 PM----------------------GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGW 274
P G T H A +D EM ++L + L G
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR 193
Query: 275 LPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAAL 316
PLHLA V++ LLKA + G+ PL A L
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYG-GRTPLGSALL 234
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 304 NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSR 354
N+ G+ LHLAA++G +T+++L + + LV +RG H ALH R
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGG---HTALHLACR 87
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%)
Query: 151 QNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPL 210
+N+ E E RL L N T LH AV + ++V++L L G TPL
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 211 YLAAERGYINVVEDIISTCKSPADHGPMGRT 241
+LA E +V+E ++ P GRT
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRT 227
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 77/222 (34%), Gaps = 54/222 (24%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
N G+T LH+AA G A V+ L A GV A TALH A
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGA---------GVLVA-------ERGGHTALHLA 85
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDII-STCKSPA--DHG 236
R +L + PS P DA++ Y+ +D T +PA D
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDT------------YLTQSQDCTPDTSHAPAAVDSQ 133
Query: 237 PM----------------------GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGW 274
P G T H A +D EM ++L + L G
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR 193
Query: 275 LPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAAL 316
PLHLA V++ LLKA + G+ PL A L
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYG-GRTPLGSALL 234
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 304 NNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSR 354
N+ G+ LHLAA++G +T+++L + + LV +RG H ALH R
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGG---HTALHLACR 87
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 213 AAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQH 272
AA RG + + ++ + GRTA ++LL +G D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL--RGANPDLKDRT 69
Query: 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332
G+ +H AA G ++ LL+ + +N+G +PLHLAA G L ++ L++ S
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 333 SCELVDDRGWNVFHFALHSGSRRTVELL 360
+ + +G A G V L+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 160 AARLML-GTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAA 214
A RL+L G + KD +H+A R +D ++ L + + + +N G PL+LAA
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAA 111
Query: 215 ERGYINVVEDIISTCKSPADH 235
+ G++ VVE ++ S H
Sbjct: 112 KEGHLRVVEFLVKHTASNVGH 132
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 3/148 (2%)
Query: 213 AAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQH 272
AA RG + + ++ + GRTA ++LL +G D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL--RGANPDLKDRT 69
Query: 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332
G+ +H AA G ++ LL+ + +N+G +PLHLAA G L ++ L++ S
Sbjct: 70 GFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 333 SCELVDDRGWNVFHFALHSGSRRTVELL 360
+ + +G A G V L+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 160 AARLML-GTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAA 214
A RL+L G + KD +H+A R +D ++ L + + + +N G PL+LAA
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAA 111
Query: 215 ERGYINVVEDIISTCKSPADH 235
+ G++ VVE ++ S H
Sbjct: 112 KEGHLRVVEFLVKHTASNVGH 132
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 4/139 (2%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L A V V+ L + P N G+T L + G + +++ SP
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQ 64
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
G + H AA + KVL+ G + PD G LP+HLA G VV L A
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFL--A 121
Query: 296 DKSAAYKANNKGKIPLHLA 314
+S ++ + +G PL LA
Sbjct: 122 AESDLHRRDARGLTPLELA 140
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 18/104 (17%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+T G + +H AAR G D +K L+ E G + + + +H A
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLV-----------EHGAD-----VNVPDGTGALPIHLA 108
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVE 223
V+ VV L E DA G TPL LA +RG ++V+
Sbjct: 109 VQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLVD 150
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 4/139 (2%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L A V V+ L + P N G+T L + G + +++ SP
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ 70
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
G + H AA + KVL+ G + PD G LP+HLA G VV L A
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFL--A 127
Query: 296 DKSAAYKANNKGKIPLHLA 314
+S ++ + +G PL LA
Sbjct: 128 AESDLHRRDARGLTPLELA 146
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
+T G + +H AAR G D +K L+ E G + + + +H A
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLV-----------EHGAD-----VNVPDGTGALPIHLA 114
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSP 232
V+ VV L E DA G TPL LA +RG ++V+ + +P
Sbjct: 115 VQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLVDILQGHMVAP 165
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 252 TEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPL 311
++ K LSSK T K D HG + A +V LL A A K + + PL
Sbjct: 12 SKQLKSFLSSKDTF--KADVHGHSASYYAIADNNVRLVCTLLNA---GALKNLLENEFPL 66
Query: 312 HLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLK 362
H AA + ++ L+ S + DD+G ++A+ SG+ +TV+L +K
Sbjct: 67 HQAATLEDTKIVKILLFSGLDDSQF-DDKGNTALYYAVDSGNXQTVKLFVK 116
Score = 35.4 bits (80), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 244 HAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKA 303
H AA EDT++ K+LL S G S+ D G L+ A G VK +K + +
Sbjct: 67 HQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYG 125
Query: 304 NNKGKIPLHLAALMGRLNTMQELIRSCPSSCEL 336
K + A + ++ + + PS+ +L
Sbjct: 126 KTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDL 158
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 160 AARLML-GTTNEAKD----TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAA 214
A RL+L G + KD +H+A R +D ++ L + + + +N G PL+LAA
Sbjct: 53 ARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAA 111
Query: 215 ERGYINVVEDIISTCKSPADH 235
+ G++ VVE ++ S H
Sbjct: 112 KEGHLRVVEFLVKHTASNVGH 132
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKS 298
G H AA + + LL + + + D G LPLHLAA G VV+ L+K S
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 299 AAYKANNKGKIPLHLAALMGR 319
N+KG LA L GR
Sbjct: 129 NVGHRNHKGDTACDLARLYGR 149
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 61/148 (41%), Gaps = 3/148 (2%)
Query: 213 AAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQH 272
AA RG + + ++ + GRTA ++LL +G D+
Sbjct: 12 AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLL--RGANPDLKDRT 69
Query: 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332
G +H AA G ++ LL+ + +N+G +PLHLAA G L ++ L++ S
Sbjct: 70 GNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128
Query: 333 SCELVDDRGWNVFHFALHSGSRRTVELL 360
+ + +G A G V L+
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEVVSLM 156
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 66/235 (28%), Positives = 93/235 (39%), Gaps = 30/235 (12%)
Query: 164 MLGTTNEAKDTALHEAVRYNQVDVVKMLTK--EDPSLPYDA-NNAGETPLYLAAERGYIN 220
M +E DT LH AV + V L + D NN +TPL+LA +
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 221 VVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSK--GTLTSKPDQH-GWLPL 277
VV +++ SP G+TA+H A + LL S GTL + + G L
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 278 HLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELV 337
H+A V+ LL+ G+ PL A L+ +Q L++
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ--------- 171
Query: 338 DDRGWNV------FHFALHSGSRR----TVELLLKSPSLGNLVNEKNDDGNTPLL 382
G NV ALHS S R V L++S + +L N ND TPL+
Sbjct: 172 --HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND---TPLM 221
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 84/212 (39%), Gaps = 35/212 (16%)
Query: 118 KANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALH 177
+A+ G+T LHIA G+ V L+ + + G E L N + T LH
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQ-------QGGRE-----LDIYNNLRQTPLH 51
Query: 178 EAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGP 237
AV VV++L S P + G+T +LA E + ++ + A G
Sbjct: 52 LAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDS----AAPGT 106
Query: 238 M--------GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVV 289
+ G TA H A E E ++LL + + + G PL A +V
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 290 KELLK----------ADKSAAYKANNKGKIPL 311
+ LL+ + SA + A+ +G +PL
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRGLLPL 198
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 82/210 (39%), Gaps = 27/210 (12%)
Query: 207 ETPLYLAAERGYINVVEDIIST--CKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGT 264
E+PL LAA+ + + ++ C+ G MG TA H AA ++ E VL+ +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPE 62
Query: 265 LTSKPDQ----HGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNK------------GK 308
L +P G LH+A +V+ LL S + +A G+
Sbjct: 63 LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122
Query: 309 IPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSR----RTVELLLKSP 364
PL AA +G ++ LI + D G V H + ++ + LLL
Sbjct: 123 HPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181
Query: 365 S---LGNLVNEKNDDGNTPLLEHAVSGSFI 391
L +L N+ G TP V G+ +
Sbjct: 182 GGDHLKSLELVPNNQGLTPFKLAGVEGNIV 211
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 173 DTALHEAVRYNQVDVVKMLTKEDPSLPYDANNA----GETPLYLAAERGYINVVEDIIST 228
+TALH A Y+ ++ +L + P L ++ + G+T L++A +N+V +++
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 229 CKSPADHGP----------MGRTASHAAAF--CEDTEMTKVLLSSKGTLTSKPDQHGWLP 276
S + + H +F C +E LL G D G
Sbjct: 98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157
Query: 277 LHL------AAYLGKHYVVKELLKAD-----KSAAYKANNKGKIPLHLAALMGRLNTMQE 325
LH+ + + Y + LL D KS NN+G P LA + G + Q
Sbjct: 158 LHILILQPNKTFACQMYNL--LLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215
Query: 326 LIR 328
L++
Sbjct: 216 LMQ 218
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 32/218 (14%)
Query: 172 KDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDII--STC 229
K T LH A YN+V +V++L + + + + G PL+ A G+ V E ++ C
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 230 KSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLA------AYL 283
+ D T H AA E+ +LL S G + + HG + +A L
Sbjct: 117 VNAMDLWQF--TPLHEAASKNRVEVCSLLL-SHGADPTLVNCHGKSAVDMAPTPELRERL 173
Query: 284 GKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWN 343
+ LL+A + A A K + L + +N Q C +
Sbjct: 174 TYEFKGHSLLQAAREADL-AKVKKTLALEI------INFKQPQSHETALHCAVA------ 220
Query: 344 VFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381
+LH ++ ELLL+ G VNEKN D TPL
Sbjct: 221 ----SLHPKRKQVAELLLRK---GANVNEKNKDFMTPL 251
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 105/267 (39%), Gaps = 49/267 (18%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGV-----------EAARLML-- 165
++ + T LH+AA + IV+ L+ H D V E L+L
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
Query: 166 GTTNEAKD----TALHEAVRYNQVDVVKMLTKE--DPSL----PYDANNAGETP------ 209
G A D T LHEA N+V+V +L DP+L A + TP
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173
Query: 210 --------LYLAAERGYINVVEDIIS----TCKSPADHGPMGRTASHAAAFCEDTEMTKV 257
L AA + V+ ++ K P H TA H A + +V
Sbjct: 174 TYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSH----ETALHCAVASLHPKRKQV 229
Query: 258 --LLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAA 315
LL KG ++ ++ PLH+AA H V E+L + ++ G+ LH AA
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERA-HNDVMEVLHKHGAKMNALDSLGQTALHRAA 288
Query: 316 LMGRLNTMQELIRSCPSSCELVDDRGW 342
L G L T + L+ S S ++ +G+
Sbjct: 289 LAGHLQTCR-LLLSYGSDPSIISLQGF 314
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 57/151 (37%), Gaps = 20/151 (13%)
Query: 281 AYLGKHYVVKELLKADKSA---------------AYKANNKGKIPLHLAALMGRLNTMQE 325
A L Y ELL+A +S + ++ + PLHLAA R+ +Q
Sbjct: 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQL 76
Query: 326 LIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHA 385
L++ + D G H A G ELLLK G VN + TPL E A
Sbjct: 77 LLQH-GADVHAKDKGGLVPLHNACSYGHYEVTELLLKH---GACVNAMDLWQFTPLHEAA 132
Query: 386 VSGSF-IQSFVCHPKVDRLAFNHHNCSAEDI 415
+ S + D N H SA D+
Sbjct: 133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 235 HGPMGRTAS--HAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKEL 292
H GR ++ H AA + ++LL + +K D+ G +PLH A G HY V EL
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK-DKGGLVPLHNACSYG-HYEVTEL 109
Query: 293 LKADKSAAYKANNKGKIPLHLAALMGRLNTMQELI 327
L + + PLH AA R+ L+
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + N G TPL+LAA G++ VV+ ++
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 236 GPMGRTA 242
G+TA
Sbjct: 87 DKFGKTA 93
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
+G+ AA +D E+ ++L+++ + +K D++G PLHLAA G VVK LL+A
Sbjct: 24 LGKKLLEAARAGQDDEV-RILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 280 AAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDD 339
AA G+ V+ L+ A K N G PLHLAA G L ++ L+ + D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVK-LLLEAGADVXAQDK 88
Query: 340 RGWNVFHFALHSGSRRTVELL 360
G F ++ +G+ E+L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + N G TPL+LAA G++ VV+ ++
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 236 GPMGRTA 242
G+TA
Sbjct: 69 DKFGKTA 75
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
+G+ AA +D E+ ++L+++ + +K D++G PLHLAA G VVK LL+A
Sbjct: 6 LGKKLLEAARAGQDDEV-RILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 280 AAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDD 339
AA G+ V+ L+ A K N G PLHLAA G L ++ L+ + D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVK-LLLEAGADVNAQDK 70
Query: 340 RGWNVFHFALHSGSRRTVELL 360
G F ++ +G+ E+L
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 171 AKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK 230
A+ L+ A R Q +V+ +E G TPL AA G I VVE ++
Sbjct: 10 AQGEMLYLATRIEQENVINHTDEE-----------GFTPLMWAAAHGQIAVVEFLLQNGA 58
Query: 231 SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHY-VV 289
P G +A A T++ K+LL G ++ D +G PL L A G H V
Sbjct: 59 DPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPL-LYAVHGNHVKCV 116
Query: 290 KELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRS 329
K LL++ + ++ G + LA +G ++Q++I S
Sbjct: 117 KMLLESGADPTIETDS-GYNSMDLAVALGY-RSVQQVIES 154
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 171 AKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK 230
A+ L+ A R Q +V+ +E G TPL AA G I VVE ++
Sbjct: 28 AQGEMLYLATRIEQENVINHTDEE-----------GFTPLMWAAAHGQIAVVEFLLQNGA 76
Query: 231 SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHY-VV 289
P G +A A T++ K+LL G ++ D +G PL L A G H V
Sbjct: 77 DPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPL-LYAVHGNHVKCV 134
Query: 290 KELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRS 329
K LL++ + ++ G + LA +G ++Q++I S
Sbjct: 135 KMLLESGADPTIETDS-GYNSMDLAVALGY-RSVQQVIES 172
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 171 AKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK 230
A+ L+ A R Q +V+ +E G TPL AA G I VVE ++
Sbjct: 12 AQGEMLYLATRIEQENVINHTDEE-----------GFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 231 SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHY-VV 289
P G +A A T++ K+LL G ++ D +G PL L A G H V
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDC-GVDVNEYDWNGGTPL-LYAVHGNHVKCV 118
Query: 290 KELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRS 329
K LL++ + ++ G + LA +G ++Q++I S
Sbjct: 119 KMLLESGADPTIETDS-GYNSMDLAVALGY-RSVQQVIES 156
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 28/125 (22%)
Query: 119 ANTKGETLLHIAARHGHADIVKDLI--AECKKPHQN-------------------DPEKG 157
A++ G T LH + H + +V+ L+ CK QN D E
Sbjct: 107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETV 166
Query: 158 VEAARLMLGTTN----EAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLA 213
++ RL G N +A TAL AV + +VDVVK L + + ++ G T L A
Sbjct: 167 LQLFRL--GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCA 223
Query: 214 AERGY 218
E G+
Sbjct: 224 CEHGH 228
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 28/127 (22%)
Query: 39 VEGHTDQFRA-HAQMLDQILT---PNENTILHVHIT---------------ARPDQTMRP 79
V H FRA A++LD ++ N NT LH ++ + D+ R
Sbjct: 85 VRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRA 144
Query: 80 NNELKSSLWMMMSTLKKQSSSSEHFVRGILEM--CPGLLLKANTKGETLLHIAARHGHAD 137
+ ++TLK Q + +L++ + KA+ G+T L +A HG D
Sbjct: 145 G--YSPIMLTALATLKTQDD-----IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVD 197
Query: 138 IVKDLIA 144
+VK L+A
Sbjct: 198 VVKALLA 204
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 173 DTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAER 216
+TALH A YNQ D +K+L K +L N AGET L +A ++
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKK 269
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 213 AAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQH 272
A + G ++ V+D ++ + GR H AA C E+ + LL KG + PD+H
Sbjct: 9 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKH 67
Query: 273 GWLPLHLAAYLGKHYVVKELLK--ADKS 298
PL A Y G VK LL ADK+
Sbjct: 68 HITPLLSAVYEGHVSCVKLLLSKGADKT 95
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 213 AAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQH 272
A + G ++ V+D ++ + GR H AA C E+ + LL KG + PD+H
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKH 72
Query: 273 GWLPLHLAAYLGKHYVVKELLK--ADKS 298
PL A Y G VK LL ADK+
Sbjct: 73 HITPLLSAVYEGHVSCVKLLLSKGADKT 100
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 29/134 (21%)
Query: 130 AARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVK 189
A ++G D VKD +A KG + R T E LH A Q+++++
Sbjct: 14 ALKNGDLDEVKDYVA-----------KGEDVNR-----TLEGGRKPLHYAADCGQLEILE 57
Query: 190 MLTKEDPSLPYDANNAGE----TPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHA 245
L + + NA + TPL A G+++ V+ ++S GP G TA A
Sbjct: 58 FLLLKGADI-----NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112
Query: 246 AAFCEDTEMTKVLL 259
D + K LL
Sbjct: 113 T----DNQAIKALL 122
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.1 bits (74), Expect = 0.32, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 238 MGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
+G+ AA +D E+ ++L+++ + +K D+ G+ PLHLAA G +V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 57
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L EA R Q D V++L + + G TPL+LAA G++ +VE ++
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 236 GPMGRTA 242
G+TA
Sbjct: 65 DKFGKTA 71
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 292 LLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHS 351
+L A+ + + G PLHLAA G L ++ L+++ + D G F ++ +
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA-GADVNAQDKFGKTAFDISIDN 78
Query: 352 GSRRTVELLLKS 363
G+ E+L K+
Sbjct: 79 GNEDLAEILQKA 90
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 210 LYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAA--FCEDTEMTKVLLSSKGTLTS 267
+++AA +G + V +I T SP G TA H A C DT L+S G + S
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAK---YLASVGEVHS 80
Query: 268 KPDQHGWLPLHLAAYLGKHYVVKELLKADK 297
HG P+HLA K +V L++ K
Sbjct: 81 L--WHGQKPIHLAVXANKTDLVVALVEGAK 108
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 23/116 (19%)
Query: 117 LKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTAL 176
+K++ + +H+AAR G D V+ LI E GV N TAL
Sbjct: 14 IKSDDENXEKIHVAARKGQTDEVRRLI-----------ETGVSPT-----IQNRFGCTAL 57
Query: 177 HEAVRYNQVDVVKMLTK--EDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK 230
H A ++ VD K L E SL + G+ P++LA ++V ++ K
Sbjct: 58 HLACKFGCVDTAKYLASVGEVHSLWH-----GQKPIHLAVXANKTDLVVALVEGAK 108
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 173 DTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAER 216
+TALH A YNQ D +K+L K +L N AGET L +A ++
Sbjct: 208 NTALHYAALYNQPDCLKLLLK-GRALVGTVNEAGETALDIARKK 250
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 59/151 (39%), Gaps = 4/151 (2%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L A V V+ L + P N G+T L + G V +++ SP
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQ 70
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
G + H AA + KVL+ G + D G LP+HLA G VV L A
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL--A 127
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQEL 326
+S + + G PL LA G N M L
Sbjct: 128 PESDLHHRDASGLTPLELARQRGAQNLMDIL 158
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 59/151 (39%), Gaps = 4/151 (2%)
Query: 176 LHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH 235
L A V V+ L + P N G+T L + G V +++ SP
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQ 72
Query: 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA 295
G + H AA + KVL+ G + D G LP+HLA G VV L A
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFL--A 129
Query: 296 DKSAAYKANNKGKIPLHLAALMGRLNTMQEL 326
+S + + G PL LA G N M L
Sbjct: 130 PESDLHHRDASGLTPLELARQRGAQNLMDIL 160
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 15/69 (21%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
G T L+ A GH DIV+ L + P+ + L N+ DTALH A
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQ---PN------------IELNQQNKLGDTALHAAAWK 150
Query: 183 NQVDVVKML 191
D+V++L
Sbjct: 151 GYADIVQLL 159
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 116 LLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEK 156
L + N G+T LH AA G+ADIV+ L+A+ + + EK
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 162 RLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNA-GETPLYLAAERGYIN 220
R+ + ++A TAL+ A D+V+ L + P++ + N G+T L+ AA +GY +
Sbjct: 96 RVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ-PNIELNQQNKLGDTALHAAAWKGYAD 154
Query: 221 VVEDIIS 227
+V+ +++
Sbjct: 155 IVQLLLA 161
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 24/91 (26%)
Query: 310 PLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNV----------FHFALHSGSRRTVEL 359
P+H AA+ G +++ LI +GW V H A G V++
Sbjct: 6 PMHEAAIHGHQLSLRNLI-----------SQGWAVNIITADHVSPLHEACLGGHLSCVKI 54
Query: 360 LLKSPSLGNLVNEKNDDGNTPLLEHAVSGSF 390
LLK G VN D +TPL VSGS+
Sbjct: 55 LLKH---GAQVNGVTADWHTPLFNACVSGSW 82
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 24/91 (26%)
Query: 310 PLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNV----------FHFALHSGSRRTVEL 359
P+H AA+ G +++ LI +GW V H A G V++
Sbjct: 62 PMHEAAIHGHQLSLRNLI-----------SQGWAVNIITADHVSPLHEACLGGHLSCVKI 110
Query: 360 LLKSPSLGNLVNEKNDDGNTPLLEHAVSGSF 390
LLK G VN D +TPL VSGS+
Sbjct: 111 LLKH---GAQVNGVTADWHTPLFNACVSGSW 138
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 39/173 (22%)
Query: 174 TALHEAVRYNQVDVVKMLTKEDPSLPYDANN-------------AGETPLYLAAERGYIN 220
TALH A+ +V +L + + AN GE PL LAA +
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 221 VVEDIISTCKSPAD---HGPMGRTASHAAAFCEDTEM--TKVLLSSKGTLTSKPDQHGWL 275
+V+ ++ PAD +G T HA D + TK + S +
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYNEI---------- 212
Query: 276 PLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIR 328
L L A L ++E+ N KG PL LAA G++ + +++
Sbjct: 213 -LILGAKLHPTLKLEEI----------TNRKGLTPLALAASSGKIGVLAYILQ 254
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 28/119 (23%)
Query: 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY 182
GE L +AA IVK L+ QN + +AR +G +T LH V
Sbjct: 148 GELPLSLAACTNQLAIVKFLL-------QNSWQPADISARDSVG------NTVLHALVEV 194
Query: 183 --NQVDVVKMLT-----------KEDPSLPYD--ANNAGETPLYLAAERGYINVVEDII 226
N VD K +T K P+L + N G TPL LAA G I V+ I+
Sbjct: 195 ADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 307 GKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSL 366
G PL LAA + +++LI S + VDD G + H+A + +LLK+ +
Sbjct: 15 GTTPLILAARLALEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN 73
Query: 367 GNLVNEKNDDGNTPLLEHAVSGSF 390
++ N K + TPL A GS+
Sbjct: 74 KDMQNNKEE---TPLFLAAREGSY 94
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 206 GETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTL 265
G TPL LAA ++ED+I++ +G++A H AA + + VLL + G
Sbjct: 15 GTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GAN 73
Query: 266 TSKPDQHGWLPLHLAAYLGKHYVVKELL 293
+ PL LAA G + K LL
Sbjct: 74 KDMQNNKEETPLFLAAREGSYETAKVLL 101
>pdb|3ZVH|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
pdb|3ZVH|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant Q73a
Length = 438
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 127 LHIAARHGHADIVKDLIAECKKP-------HQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
LH A R+G + D +A+ +K + +P + A + + ++
Sbjct: 126 LHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDD--------- 176
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAER--GYINVVEDIISTCKSPADHGP 237
RY+ VD KM+ KE LP+ N E L L E+ Y+ + D I + D+ P
Sbjct: 177 -RYDNVD--KMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAP 233
Query: 238 M 238
+
Sbjct: 234 I 234
>pdb|1KCZ|A Chain A, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex.
pdb|1KCZ|B Chain B, Crystal Structure Of Beta-Methylaspartase From Clostridium
Tetanomorphum. Mg-Complex
Length = 413
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 127 LHIAARHGHADIVKDLIAECKKP-------HQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
LH A R+G + D +A+ +K + +P + A + + ++
Sbjct: 126 LHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDD--------- 176
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAER--GYINVVEDIISTCKSPADHGP 237
RY+ VD KM+ KE LP+ N E L L E+ Y+ + D I + D+ P
Sbjct: 177 -RYDNVD--KMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAP 233
Query: 238 M 238
+
Sbjct: 234 I 234
>pdb|3ZVI|A Chain A, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
pdb|3ZVI|B Chain B, Methylaspartate Ammonia Lyase From Clostridium
Tetanomorphum Mutant L384a
Length = 438
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 21/121 (17%)
Query: 127 LHIAARHGHADIVKDLIAECKKP-------HQNDPEKGVEAARLMLGTTNEAKDTALHEA 179
LH A R+G + D +A+ +K + +P + A + + ++
Sbjct: 126 LHTAIRYGITQAILDAVAKTRKVTMAEVIRDEYNPGAEINAVPVFAQSGDD--------- 176
Query: 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAER--GYINVVEDIISTCKSPADHGP 237
RY+ VD KM+ KE LP+ N E L L E+ Y+ + D I + D+ P
Sbjct: 177 -RYDNVD--KMIIKEADVLPHALINNVEEKLGLKGEKLLEYVKWLRDRIIKLRVREDYAP 233
Query: 238 M 238
+
Sbjct: 234 I 234
>pdb|1Z4V|A Chain A, Parainfluenza Virus 5 (Sv5) Hemagglutinin-Neuraminidase
(Hn) With Ligand Dana (Soaked With Dana, Ph 7.0)
pdb|1Z4W|A Chain A, Parainfluenza Virus 5 (Sv5) Hemagglutinin-Neuraminidase
(Hn) With Ligand Dana (Soaked With Dana, Ph8.0)
pdb|1Z4X|A Chain A, Parainfluenza Virus 5 (sv5) Hemagglutinin-neuraminidase
(hn) With Ligand Sialyllactose (soaked With
Sialyllactose, Ph8.0)
pdb|1Z4Y|A Chain A, Parainfluenza Virus 5 (Sv5) Hemagglutinin-Neuraminidase
(Hn) (Ph 8.0)
pdb|1Z4Z|A Chain A, Parainfluenza Virus 5 (Sv5) Hemagglutinin-Neuraminidase
(Hn) With Ligand Dana(Soaked With Sialic Acid, Ph7.0))
pdb|1Z50|A Chain A, Parainfluenza Virus 5 (sv5) Hemagglutinin-neuraminidase
(hn) With Ligand Dana (soaked With Sialic Acid, Ph 8.0)
Length = 532
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 304 NNKGKIPLHLAAL-------MGRLNTMQELIRSCPSSCELVDDR----GWNVFHFALHSG 352
N+ +PL L L + L T +L ++C S L++D G N F+F++ G
Sbjct: 45 NSAVALPLQLDTLESTLLTAIKSLQTSDKLEQNCSWSAALINDNRYINGINQFYFSIAEG 104
Query: 353 SRRTVELLLKSPSL 366
T+ LL PS
Sbjct: 105 RNLTLGPLLNMPSF 118
>pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 21 PSVREKNFELMDSLYKAAVEGHTDQFRAHAQMLDQILTPNENTILHVHITARPDQTMRPN 80
P++R+ +L+ S K G D+ ++IL + HI+ + ++ N
Sbjct: 172 PTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILN------IFKHISVKDFTSLGFN 225
Query: 81 NELKSSLWMMMSTLKKQ------SSSSEHFVRGILEMCPGL--LLKANTKGETLLHIAAR 132
WM+++ L S S RG ++ L +LKAN ETL H A
Sbjct: 226 EVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAP 285
Query: 133 H 133
H
Sbjct: 286 H 286
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 18/75 (24%)
Query: 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVE-AARLMLGTTNEAKDTALHE 178
N +GET L +A+++G ++IVK L+ E G + +AR + G T EA
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLL-----------ELGADISARDLTGLTAEAS------ 173
Query: 179 AVRYNQVDVVKMLTK 193
A + + +V+K+ T+
Sbjct: 174 ARIFGRQEVIKIFTE 188
>pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 1733
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 21 PSVREKNFELMDSLYKAAVEGHTDQFRAHAQMLDQILTPNENTILHVHITARPDQTMRPN 80
P++R+ +L+ S K G D+ ++IL + HI+ + ++ N
Sbjct: 172 PTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILN------IFKHISVKDFTSLGFN 225
Query: 81 NELKSSLWMMMSTLKKQ------SSSSEHFVRGILEMCPGL--LLKANTKGETLLHIAAR 132
WM+++ L S S RG ++ L +LKAN ETL H A
Sbjct: 226 EVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAP 285
Query: 133 H 133
H
Sbjct: 286 H 286
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 2/150 (1%)
Query: 175 ALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPAD 234
++H+ ++D +K ++ +L + G TPL A+ G I V ++ P
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 235 HGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
+A A+ T++ +LL + D +G PL L A G H E L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPL-LYAVRGNHVKCVEALL 122
Query: 295 ADKSAAYKANNKGKIPLHLAALMGRLNTMQ 324
A + + G P+ LA +G Q
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 5/139 (3%)
Query: 246 AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANN 305
AA DT+ K +L + D G PL++A + + K L+ D+ A N
Sbjct: 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI--DRGADINLQN 69
Query: 306 K-GKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSP 364
P A GR + +++ + G N A G V+LLL+
Sbjct: 70 SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129
Query: 365 SLGNLVNEKNDDGNTPLLE 383
++ +ND G T L+E
Sbjct: 130 RED--IDFQNDFGYTALIE 146
>pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 21 PSVREKNFELMDSLYKAAVEGHTDQFRAHAQMLDQILTPNENTILHVHITARPDQTMRPN 80
P++R+ +L+ S K G D+ ++IL + HI+ + ++ N
Sbjct: 172 PTIRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILN------IFKHISVKDFTSLGFN 225
Query: 81 NELKSSLWMMMSTLKKQ------SSSSEHFVRGILEMCPGL--LLKANTKGETLLHIAAR 132
WM+++ L S S RG ++ L +LKAN ETL H A
Sbjct: 226 EVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAP 285
Query: 133 H 133
H
Sbjct: 286 H 286
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 2/150 (1%)
Query: 175 ALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPAD 234
++H+ ++D +K ++ +L + G TPL A+ G I V ++ P
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 235 HGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294
+A A+ T++ +LL + D +G PL L A G H E L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIY-DWNGGTPL-LYAVHGNHVKCVEALL 122
Query: 295 ADKSAAYKANNKGKIPLHLAALMGRLNTMQ 324
A + + G P+ LA +G Q
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQ 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,856,756
Number of Sequences: 62578
Number of extensions: 525669
Number of successful extensions: 2112
Number of sequences better than 100.0: 113
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1228
Number of HSP's gapped (non-prelim): 431
length of query: 427
length of database: 14,973,337
effective HSP length: 102
effective length of query: 325
effective length of database: 8,590,381
effective search space: 2791873825
effective search space used: 2791873825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)