Query 044093
Match_columns 427
No_of_seqs 281 out of 3304
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 19:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044093.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044093hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 1.5E-60 5.2E-65 448.0 34.7 366 22-420 6-388 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 2.6E-54 8.9E-59 405.6 33.1 344 21-397 38-398 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 2.5E-47 8.4E-52 345.6 28.3 259 121-405 57-330 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 2.7E-46 9.4E-51 341.0 27.5 328 23-421 17-351 (351)
5 4g8k_A 2-5A-dependent ribonucl 100.0 1.1E-45 3.9E-50 334.7 29.5 293 25-373 20-330 (337)
6 1wdy_A 2-5A-dependent ribonucl 100.0 4.5E-45 1.6E-49 323.0 30.5 264 122-407 4-284 (285)
7 3utm_A Tankyrase-1; tankyrase, 100.0 2.2E-46 7.4E-51 341.7 22.1 299 57-418 20-322 (351)
8 1wdy_A 2-5A-dependent ribonucl 100.0 2.7E-44 9.3E-49 318.0 26.7 235 120-375 36-284 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 3.6E-45 1.2E-49 335.1 18.7 310 33-401 40-371 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 5.5E-42 1.9E-46 302.2 25.3 270 119-404 11-282 (285)
11 2xai_A ASB-9, ankyrin repeat a 100.0 7.2E-41 2.5E-45 291.6 25.7 239 171-419 2-248 (261)
12 3d9h_A CDNA FLJ77766, highly s 100.0 4.7E-41 1.6E-45 296.3 24.2 243 169-419 12-265 (285)
13 3ljn_A Hypothetical protein; a 100.0 6.1E-42 2.1E-46 313.5 17.3 268 116-408 13-321 (364)
14 2xai_A ASB-9, ankyrin repeat a 100.0 9.4E-41 3.2E-45 290.8 23.5 247 122-392 2-253 (261)
15 2fo1_E LIN-12 protein; beta-ba 100.0 1E-41 3.6E-46 312.2 18.3 272 25-363 89-368 (373)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 6.7E-41 2.3E-45 290.4 22.1 231 165-400 3-247 (253)
17 1oy3_D Transcription factor in 100.0 9.9E-41 3.4E-45 294.7 21.4 252 165-421 2-270 (282)
18 1oy3_D Transcription factor in 100.0 1.9E-40 6.5E-45 292.9 22.3 255 116-389 2-270 (282)
19 1k1a_A B-cell lymphoma 3-encod 100.0 2.7E-39 9.2E-44 278.6 25.0 229 166-400 3-240 (241)
20 3b7b_A Euchromatic histone-lys 100.0 5.5E-39 1.9E-43 275.9 26.6 221 166-392 5-225 (237)
21 3ljn_A Hypothetical protein; a 100.0 2.6E-40 8.7E-45 302.8 19.3 247 165-419 13-299 (364)
22 3aji_A 26S proteasome non-ATPa 100.0 2.9E-39 9.9E-44 276.5 23.7 228 169-402 3-231 (231)
23 1yyh_A HN1;, notch 1, ankyrin 100.0 2.9E-39 1E-43 280.1 23.1 228 57-330 6-246 (253)
24 3b7b_A Euchromatic histone-lys 100.0 1.9E-38 6.4E-43 272.6 25.2 216 201-421 6-222 (237)
25 1k1a_A B-cell lymphoma 3-encod 100.0 1.1E-38 3.8E-43 274.8 22.3 228 116-363 2-238 (241)
26 1s70_B 130 kDa myosin-binding 100.0 4.1E-39 1.4E-43 286.8 18.1 270 129-419 4-275 (299)
27 4b93_B Ankyrin repeat domain-c 100.0 5.9E-39 2E-43 279.4 17.9 230 168-403 7-246 (269)
28 2dzn_A Probable 26S proteasome 100.0 7.4E-38 2.5E-42 267.2 22.7 213 172-388 2-219 (228)
29 1s70_B 130 kDa myosin-binding 100.0 7.6E-39 2.6E-43 285.0 17.1 249 119-396 36-285 (299)
30 3eu9_A Huntingtin-interacting 100.0 4.1E-37 1.4E-41 264.8 25.6 228 117-363 3-232 (240)
31 3aji_A 26S proteasome non-ATPa 100.0 2E-37 6.9E-42 265.1 23.4 228 121-370 4-231 (231)
32 2dzn_A Probable 26S proteasome 100.0 2.5E-37 8.4E-42 264.0 22.4 209 206-419 2-218 (228)
33 2f8y_A Notch homolog 1, transl 100.0 2.7E-37 9.1E-42 262.8 20.9 216 183-403 2-218 (223)
34 4b93_B Ankyrin repeat domain-c 100.0 2E-38 6.8E-43 276.1 13.9 214 25-285 6-230 (269)
35 3kea_A K1L; tropism, ANK repea 100.0 2.2E-37 7.5E-42 272.7 19.6 224 168-409 27-254 (285)
36 3kea_A K1L; tropism, ANK repea 100.0 1.7E-37 5.9E-42 273.4 18.7 231 115-378 23-255 (285)
37 1sw6_A Regulatory protein SWI6 100.0 6.8E-39 2.3E-43 288.0 9.6 297 59-419 21-326 (327)
38 3eu9_A Huntingtin-interacting 100.0 1.6E-36 5.4E-41 261.1 24.0 232 167-405 4-239 (240)
39 1sw6_A Regulatory protein SWI6 100.0 1.2E-38 4.3E-43 286.2 4.5 248 122-420 22-294 (327)
40 2f8y_A Notch homolog 1, transl 100.0 2E-35 6.9E-40 251.2 23.4 199 116-332 18-216 (223)
41 1ikn_D Protein (I-kappa-B-alph 100.0 5.7E-36 1.9E-40 256.8 14.1 210 205-419 7-229 (236)
42 2rfa_A Transient receptor pote 100.0 5.7E-34 1.9E-38 243.7 21.6 204 122-363 2-219 (232)
43 2rfa_A Transient receptor pote 100.0 1.4E-33 4.9E-38 241.2 20.9 210 171-407 2-228 (232)
44 1ikn_D Protein (I-kappa-B-alph 100.0 4.1E-35 1.4E-39 251.4 11.2 218 167-389 3-231 (236)
45 3hra_A Ankyrin repeat family p 100.0 3.9E-33 1.3E-37 233.0 22.6 192 171-399 4-201 (201)
46 3hra_A Ankyrin repeat family p 100.0 4.6E-32 1.6E-36 226.5 24.3 163 165-329 32-200 (201)
47 2pnn_A Transient receptor pote 100.0 6.2E-33 2.1E-37 243.3 14.6 222 166-414 7-272 (273)
48 4gpm_A Engineered protein OR26 100.0 4.4E-32 1.5E-36 218.1 18.3 155 243-403 8-163 (169)
49 2etb_A Transient receptor pote 100.0 4.5E-33 1.5E-37 241.8 13.5 208 171-405 1-250 (256)
50 2pnn_A Transient receptor pote 100.0 1.7E-32 5.7E-37 240.5 16.0 233 117-381 7-271 (273)
51 2etb_A Transient receptor pote 100.0 2.6E-32 9E-37 236.9 16.4 215 30-299 2-247 (256)
52 4gpm_A Engineered protein OR26 100.0 7.5E-31 2.6E-35 210.9 21.2 157 125-299 6-162 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 2.6E-31 8.8E-36 231.3 15.2 223 29-299 4-251 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 1.2E-31 4.1E-36 233.4 11.4 210 169-405 2-254 (260)
55 3v30_A DNA-binding protein rfx 100.0 4.3E-30 1.5E-34 208.8 16.0 169 239-412 2-171 (172)
56 2aja_A Ankyrin repeat family p 100.0 5.2E-34 1.8E-38 258.2 -8.5 290 43-421 47-361 (376)
57 2rfm_A Putative ankyrin repeat 100.0 3E-29 1E-33 207.7 19.5 166 113-296 25-190 (192)
58 2rfm_A Putative ankyrin repeat 100.0 2E-29 7E-34 208.7 16.8 175 42-262 16-190 (192)
59 4hbd_A KN motif and ankyrin re 100.0 3.5E-30 1.2E-34 225.5 12.7 185 209-398 79-272 (276)
60 4hbd_A KN motif and ankyrin re 100.0 1.6E-29 5.6E-34 221.2 16.6 192 61-296 76-273 (276)
61 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.3E-28 4.3E-33 198.0 17.3 159 122-298 4-162 (162)
62 3f6q_A Integrin-linked protein 100.0 8.8E-29 3E-33 202.3 16.2 168 237-409 3-171 (179)
63 3v31_A Ankyrin repeat family A 100.0 5.3E-28 1.8E-32 195.4 20.2 160 122-299 2-161 (167)
64 2y1l_E Darpin-8.4; hydrolase-i 100.0 5.9E-29 2E-33 201.3 14.4 158 26-229 10-169 (169)
65 2aja_A Ankyrin repeat family p 100.0 6.2E-33 2.1E-37 251.1 -10.3 285 26-392 61-364 (376)
66 3v30_A DNA-binding protein rfx 100.0 3.1E-28 1.1E-32 197.8 18.2 169 123-310 2-171 (172)
67 2vge_A RELA-associated inhibit 100.0 4.9E-30 1.7E-34 217.7 7.3 190 223-420 2-199 (229)
68 2y1l_E Darpin-8.4; hydrolase-i 100.0 8E-28 2.7E-32 194.6 19.9 160 119-296 10-169 (169)
69 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.9E-28 1.3E-32 195.2 17.2 154 207-363 6-159 (162)
70 3v31_A Ankyrin repeat family A 100.0 4.3E-28 1.5E-32 196.0 17.3 159 239-403 3-162 (167)
71 3twr_A Tankyrase-2; ankyrin re 100.0 3.1E-28 1E-32 196.4 14.3 159 236-400 5-164 (165)
72 2vge_A RELA-associated inhibit 100.0 2.1E-30 7.2E-35 220.0 0.7 204 188-399 1-212 (229)
73 1awc_B Protein (GA binding pro 100.0 6.1E-27 2.1E-31 186.1 18.6 150 124-292 3-152 (153)
74 1ycs_B 53BP2, P53BP2; ankyrin 100.0 4.6E-29 1.6E-33 213.8 6.4 207 204-418 3-227 (239)
75 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.5E-26 8.5E-31 183.3 18.1 153 123-295 2-155 (156)
76 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-27 3.6E-32 205.3 10.5 178 237-421 3-193 (239)
77 1awc_B Protein (GA binding pro 99.9 2.8E-26 9.6E-31 182.3 17.8 149 173-325 3-151 (153)
78 3f6q_A Integrin-linked protein 99.9 1.7E-26 5.7E-31 188.8 15.9 166 206-377 5-171 (179)
79 3twr_A Tankyrase-2; ankyrin re 99.9 1.3E-26 4.5E-31 186.8 14.3 159 168-329 4-162 (165)
80 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.6E-26 1.6E-30 181.8 16.7 150 208-362 4-154 (156)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 1.8E-26 6.1E-31 184.0 9.7 143 268-416 7-151 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 7.3E-26 2.5E-30 175.9 11.3 131 265-401 4-136 (136)
83 3t8k_A Uncharacterized protein 99.9 6.9E-27 2.3E-31 191.1 3.6 159 29-233 5-181 (186)
84 1d9s_A Cyclin-dependent kinase 99.9 7.3E-25 2.5E-29 170.3 13.2 131 115-263 4-135 (136)
85 3t8k_A Uncharacterized protein 99.9 1.3E-25 4.4E-30 183.5 6.8 158 241-406 8-184 (186)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 1.4E-24 4.9E-29 172.9 11.8 144 117-279 6-150 (156)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5E-24 1.7E-28 163.3 13.6 125 272-401 1-126 (126)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.8E-23 1.3E-27 158.4 17.3 125 122-263 1-125 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 2.6E-23 8.8E-28 161.5 14.9 127 119-262 10-136 (136)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 1E-23 3.6E-28 163.7 12.2 125 270-399 11-136 (136)
91 3ui2_A Signal recognition part 99.9 3.2E-24 1.1E-28 184.0 8.7 172 59-297 13-184 (244)
92 3c5r_A BARD-1, BRCA1-associate 99.9 2E-23 6.9E-28 162.4 10.5 128 268-400 5-133 (137)
93 3c5r_A BARD-1, BRCA1-associate 99.9 2.5E-23 8.7E-28 161.8 10.9 114 302-419 5-119 (137)
94 3deo_A Signal recognition part 99.9 5.8E-23 2E-27 168.2 11.2 142 119-295 40-181 (183)
95 3ehr_A Osteoclast-stimulating 99.9 2.1E-23 7E-28 176.7 8.7 137 270-410 70-207 (222)
96 3aaa_C Myotrophin, protein V-1 99.9 5.2E-23 1.8E-27 156.8 10.0 109 305-417 5-114 (123)
97 3deo_A Signal recognition part 99.9 4E-23 1.4E-27 169.2 8.5 140 25-228 39-181 (183)
98 2b0o_E UPLC1; arfgap, structur 99.9 1.7E-22 5.9E-27 178.2 12.1 138 273-420 151-297 (301)
99 3ui2_A Signal recognition part 99.9 8.4E-23 2.9E-27 175.1 8.8 141 25-229 40-183 (244)
100 3aaa_C Myotrophin, protein V-1 99.9 5.6E-22 1.9E-26 151.0 10.9 112 120-248 4-115 (123)
101 1dcq_A PYK2-associated protein 99.9 1.8E-21 6.2E-26 169.7 13.4 124 274-401 131-263 (278)
102 3ehr_A Osteoclast-stimulating 99.9 8.4E-22 2.9E-26 166.7 9.4 131 117-264 67-198 (222)
103 2b0o_E UPLC1; arfgap, structur 99.9 1.4E-20 4.9E-25 165.9 17.4 122 175-297 154-283 (301)
104 2l6b_A NR1C; ankyrin, consensu 99.8 3.6E-21 1.2E-25 144.7 8.8 108 302-413 4-112 (115)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.1E-20 3.8E-25 135.9 10.1 92 306-401 1-93 (93)
106 3lvq_E ARF-GAP with SH3 domain 99.8 1.3E-20 4.5E-25 178.5 12.6 126 275-405 134-269 (497)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 6E-20 2E-24 132.1 12.8 93 122-231 1-93 (93)
108 3jue_A Arfgap with coiled-coil 99.8 2.1E-20 7.3E-25 168.4 12.4 144 271-419 197-347 (368)
109 3jue_A Arfgap with coiled-coil 99.8 1.3E-19 4.3E-24 163.4 13.2 164 237-403 197-366 (368)
110 1dcq_A PYK2-associated protein 99.8 4.6E-19 1.6E-23 154.5 15.1 28 118-145 61-88 (278)
111 3lvq_E ARF-GAP with SH3 domain 99.8 7.4E-19 2.5E-23 166.5 15.7 142 123-282 132-276 (497)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1.4E-19 4.9E-24 135.8 7.8 109 268-381 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 5.6E-17 1.9E-21 120.3 10.4 95 114-225 15-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 6.6E-17 2.2E-21 119.9 8.7 90 302-395 19-109 (110)
115 1gp8_A Protein (scaffolding pr 71.9 2.9 9.9E-05 22.6 2.2 20 33-52 16-35 (40)
116 3mkq_B Coatomer subunit alpha; 39.4 1.3E+02 0.0045 23.2 7.5 131 174-330 10-141 (177)
117 3gvo_A Pumilio 2, pumilio homo 35.3 38 0.0013 29.7 4.4 191 168-361 69-273 (351)
118 3zrh_A Ubiquitin thioesterase 31.0 1.7E+02 0.0058 26.1 7.4 61 129-193 28-90 (454)
119 3gvo_A Pumilio 2, pumilio homo 27.5 29 0.001 30.4 2.3 92 26-143 33-129 (351)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-60 Score=447.98 Aligned_cols=366 Identities=26% Similarity=0.289 Sum_probs=308.9
Q ss_pred hhhhhhHHHHHHHHHHHhcCchHHHHHHHhhcccc--cCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhC-
Q 044093 22 SVREKNFELMDSLYKAAVEGHTDQFRAHAQMLDQI--LTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQS- 98 (427)
Q Consensus 22 ~~~~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~- 98 (427)
+++..+..|.||||.||..|+++++++|++.|+++ .+..|.||||+ |+..|+ .+++++|++.|++.+.
T Consensus 6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~--A~~~g~-------~~~v~~Ll~~g~~~~~~ 76 (437)
T 1n11_A 6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM--AARAGH-------TEVAKYLLQNKAKVNAK 76 (437)
T ss_dssp ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHH--HHHHTC-------HHHHHHHHHHTCCSSCC
T ss_pred CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH--HHHcCC-------HHHHHHHHhCCCCCCCC
Confidence 45667888999999999999999999999999776 78889999999 999999 9999999988876332
Q ss_pred -------------CChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHh
Q 044093 99 -------------SSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLML 165 (427)
Q Consensus 99 -------------~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 165 (427)
.+..++++.+++.. ..++..+..|.||||+|+..|+.+++++|++.+++.+.
T Consensus 77 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-------------- 141 (437)
T 1n11_A 77 AKDDQTPLHCAARIGHTNMVKLLLENN-ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-------------- 141 (437)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC--------------
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHhCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcC--------------
Confidence 12233444444442 22344455555555555555555555555555554443
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 044093 166 GTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHA 245 (427)
Q Consensus 166 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~ 245 (427)
.+..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+
T Consensus 142 --~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 218 (437)
T 1n11_A 142 --MTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218 (437)
T ss_dssp --CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHH
T ss_pred --CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHH
Confidence 67789999999999999999999999998875 567789999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHH
Q 044093 246 AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQE 325 (427)
Q Consensus 246 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 325 (427)
|+..++.+++++|++.+.. .+..+..|.||||.|+..|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++
T Consensus 219 A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~ 296 (437)
T 1n11_A 219 AAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADV 296 (437)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999998876 6777889999999999999999999999999887 7788899999999999999999999
Q ss_pred HHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhc
Q 044093 326 LIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLA 404 (427)
Q Consensus 326 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~ 404 (427)
|++.+.. ++.++..|+||||+|+..++.+++++|+++ |+++|.+|..|.||||+|+..|+..+ ++|+++|++++.
T Consensus 297 Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 297 LIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred HHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCC
Confidence 9999765 577899999999999999999999999999 99999999999999999999999999 999999999999
Q ss_pred ccccCCChhhHHhhcc
Q 044093 405 FNHHNCSAEDIICSDK 420 (427)
Q Consensus 405 ~~~~g~t~l~~a~~~~ 420 (427)
+|..|.||+++|+..+
T Consensus 373 ~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 373 VSSDGTTPLAIAKRLG 388 (437)
T ss_dssp CCSSSCCHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHcC
Confidence 9999999999998765
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-54 Score=405.56 Aligned_cols=344 Identities=26% Similarity=0.305 Sum_probs=314.1
Q ss_pred ChhhhhhHHHHHHHHHHHhcCchHHHHHHHhhcccc--cCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhC
Q 044093 21 PSVREKNFELMDSLYKAAVEGHTDQFRAHAQMLDQI--LTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQS 98 (427)
Q Consensus 21 ~~~~~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~ 98 (427)
.+++..+..+.||||.|+..|+.+++++|++.|+++ .+..|.||||+ |+..|+ .+++++|++.|++.+.
T Consensus 38 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~g~-------~~~v~~Ll~~ga~~~~ 108 (437)
T 1n11_A 38 ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHC--AARIGH-------TNMVKLLLENNANPNL 108 (437)
T ss_dssp CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHH--HHHHTC-------HHHHHHHHHHTCCTTC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHHCCC-------HHHHHHHHhCCCCCCC
Confidence 445566777899999999999999999999999877 78899999999 999999 9999999999987553
Q ss_pred --------------CChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHH
Q 044093 99 --------------SSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLM 164 (427)
Q Consensus 99 --------------~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~ 164 (427)
.+..+.++.+++... .....+..|.||||+|+..|+.+++++|++.|++++.
T Consensus 109 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------- 174 (437)
T 1n11_A 109 ATTAGHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA------------- 174 (437)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTC-CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------------
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhCCC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------
Confidence 234566777777653 3556788999999999999999999999999999887
Q ss_pred hcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 044093 165 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASH 244 (427)
Q Consensus 165 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~ 244 (427)
.+..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..++.+++++|++.|++++..+..|.||||
T Consensus 175 ---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~ 250 (437)
T 1n11_A 175 ---AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 250 (437)
T ss_dssp ---CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred ---CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 78899999999999999999999999999865 56778999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHH
Q 044093 245 AAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQ 324 (427)
Q Consensus 245 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 324 (427)
+|+..++.+++++|++.+.. .+..+..|.||||.|+..++.+++++|++.|.+. +..+..|.||||+|+..|+.++++
T Consensus 251 ~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~ 328 (437)
T 1n11_A 251 LAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVK 328 (437)
T ss_dssp HHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHH
Confidence 99999999999999998776 6778899999999999999999999999999988 788899999999999999999999
Q ss_pred HHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcc
Q 044093 325 ELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCH 397 (427)
Q Consensus 325 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~ 397 (427)
+|++.+.+ ++.++..|+||||+|+..++.+++++|+++ |++++.+|.+|+|||++|.+.|...+ ++|..
T Consensus 329 ~Ll~~gad-~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~---ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~ 398 (437)
T 1n11_A 329 FLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKN---GASPNEVSSDGTTPLAIAKRLGYISVTDVLKV 398 (437)
T ss_dssp HHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhcCCC-CCCCCCCCCCHHHHHHHCChHHHHHHHHHC---cCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99999766 678999999999999999999999999999 99999999999999999999999877 66653
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.5e-47 Score=345.56 Aligned_cols=259 Identities=20% Similarity=0.165 Sum_probs=235.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 044093 121 TKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPY 200 (427)
Q Consensus 121 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~ 200 (427)
..|.||||+||..|+.++|++|+++|++++. .+..+.++++.++..+...++..++..+.++.
T Consensus 57 ~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 119 (337)
T 4g8k_A 57 EGGWTPLHNAVQMSREDIVELLLRHGADPVL----------------RKKNGATPFILAAIAGSVKLLKLFLSKGADVN- 119 (337)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-
T ss_pred CCCcCHHHHHHHcCCHHHHHHHHHcCCchhh----------------hccCCCchhHHHHhcccchhhHHhhhccchhh-
Confidence 4589999999999999999999999999887 88899999999999999999999999999876
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCC
Q 044093 201 DANNAGETPLYLAAERGYINVVEDIISTCKSPADH----------GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPD 270 (427)
Q Consensus 201 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 270 (427)
..+..|.|||++|+..++.+++++|+++|++++.. +..|.||||+|+..|+.+++++|+++.+..++..+
T Consensus 120 ~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d 199 (337)
T 4g8k_A 120 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACD 199 (337)
T ss_dssp CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCC
T ss_pred hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccC
Confidence 67889999999999999999999999999887653 45688999999999999999999987666688889
Q ss_pred CCCChHHHHHHHcCC----HHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHH
Q 044093 271 QHGWLPLHLAAYLGK----HYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFH 346 (427)
Q Consensus 271 ~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 346 (427)
..|.|+++.++..+. ..++++|++.|+++ +.++..|.||||+|+..++.+++++|++..+.+++.+|..|+||||
T Consensus 200 ~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~ 278 (337)
T 4g8k_A 200 NMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALL 278 (337)
T ss_dssp TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHH
T ss_pred CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHH
Confidence 999999998876554 46889999999998 7889999999999999999999999999877778999999999999
Q ss_pred HHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcc
Q 044093 347 FALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAF 405 (427)
Q Consensus 347 ~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~ 405 (427)
+|+..|+.+++++|+++ |+++|.+ +|||+|+..++.++ ++|+++|||+|..
T Consensus 279 ~A~~~g~~~iv~~Ll~~---GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 279 LAVELKLKKIAELLCKR---GASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHHTTCHHHHHHHHTT---SCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred HHHHcCCHHHHHHHHHC---CCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 99999999999999999 9999764 69999999999999 9999999999874
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.7e-46 Score=340.98 Aligned_cols=328 Identities=19% Similarity=0.107 Sum_probs=268.9
Q ss_pred hhhhhHHHHHHHHHHHhcCchHHHHHHHhh-cccc--cCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCC
Q 044093 23 VREKNFELMDSLYKAAVEGHTDQFRAHAQM-LDQI--LTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSS 99 (427)
Q Consensus 23 ~~~~~~~~~~~l~~A~~~g~~~~~~~ll~~-~~~~--~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~ 99 (427)
....+..+.++||.||..|+.+.+++|+.. +.++ .+..|.||||+ |+..|+ .+++++|++.|++
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~--A~~~g~-------~~~v~~Ll~~g~~---- 83 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL--AAGYNR-------VRIVQLLLQHGAD---- 83 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHH--HHHTTC-------HHHHHHHHHTTCC----
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHH--HHHcCC-------HHHHHHHHHcCCC----
Confidence 345667788999999999999999999986 4444 78889999999 999999 9999999965554
Q ss_pred ChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHH
Q 044093 100 SSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEA 179 (427)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a 179 (427)
++..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|
T Consensus 84 ----------------~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~----------------~~~~g~t~L~~A 131 (351)
T 3utm_A 84 ----------------VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA----------------MDLWQFTPLHEA 131 (351)
T ss_dssp ----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTCCCHHHHH
T ss_pred ----------------CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC----------------CCCCCCCHHHHH
Confidence 566888999999999999999999999999999886 788899999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHH
Q 044093 180 VRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLL 259 (427)
Q Consensus 180 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll 259 (427)
+..|+.+++++|+++|.++. ..+..|.+|+++|+..+..+.+.+... ..++..++..+..+.++.++
T Consensus 132 ~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l 198 (351)
T 3utm_A 132 ASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFK------------GHSLLQAAREADLAKVKKTL 198 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHH------------HHHHHHHHHTTCHHHHHHHT
T ss_pred HHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhc------------ccHHHHHHHhccHHHHHHHH
Confidence 99999999999999998875 577889999999988888888777664 24678888999999999988
Q ss_pred hcCCCCCCCCCCCCChHHHHHHHc---CCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccc
Q 044093 260 SSKGTLTSKPDQHGWLPLHLAAYL---GKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCEL 336 (427)
Q Consensus 260 ~~~~~~~~~~~~~~~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~ 336 (427)
..... ....+..|.||||.|+.. +..+++++|++.|.++ +..+..|.||||+|+..++.+++++|++.+.+ ++.
T Consensus 199 ~~~~~-~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~ 275 (351)
T 3utm_A 199 ALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNA 275 (351)
T ss_dssp TTCCT-TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTC
T ss_pred Hhhcc-cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCC
Confidence 87655 344577889999999999 5589999999999988 78888999999999999999999999998765 678
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcccccCCChhhH
Q 044093 337 VDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDI 415 (427)
Q Consensus 337 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~ 415 (427)
+|..|+||||+|+..++.+++++|+++ |++++.+|..|.||+|+| ...+ ++|.+.+.. ....+.+++..
T Consensus 276 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~ 345 (351)
T 3utm_A 276 LDSLGQTALHRAALAGHLQTCRLLLSY---GSDPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLE 345 (351)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHS----CHHHHHHHHHC-----------------
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhh
Confidence 899999999999999999999999999 999999999999999998 3344 777776654 55678888888
Q ss_pred Hhhccc
Q 044093 416 ICSDKL 421 (427)
Q Consensus 416 a~~~~~ 421 (427)
|++.++
T Consensus 346 A~~~gd 351 (351)
T 3utm_A 346 ASKAGD 351 (351)
T ss_dssp ------
T ss_pred hhccCC
Confidence 887653
No 5
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.1e-45 Score=334.65 Aligned_cols=293 Identities=20% Similarity=0.196 Sum_probs=258.7
Q ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHhhcccc--cC-CCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCCh
Q 044093 25 EKNFELMDSLYKAAVEGHTDQFRAHAQMLDQI--LT-PNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSS 101 (427)
Q Consensus 25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~--~~-~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~ 101 (427)
..+.+|.|+||.||++|++++|++|++.|+++ .+ ..|+||||+ |+..|+ .++|++|++.|++
T Consensus 20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~--A~~~g~-------~~iv~~Ll~~ga~------ 84 (337)
T 4g8k_A 20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHN--AVQMSR-------EDIVELLLRHGAD------ 84 (337)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH--HHHTTC-------HHHHHHHHHTTCC------
T ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHH--HHHcCC-------HHHHHHHHHcCCc------
Confidence 35667899999999999999999999999887 44 459999999 999999 9999999977665
Q ss_pred HHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHH
Q 044093 102 EHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVR 181 (427)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~ 181 (427)
++..+..+.++++.++..+...++..+++.+++++. .+..|.||||+|+.
T Consensus 85 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~d~~g~t~l~~A~~ 134 (337)
T 4g8k_A 85 --------------PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE----------------CDFYGFTAFMEAAV 134 (337)
T ss_dssp --------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC----------------BCTTCCBHHHHHHH
T ss_pred --------------hhhhccCCCchhHHHHhcccchhhHHhhhccchhhh----------------hccCCCCHHHHHHH
Confidence 556788999999999999999999999999999887 88899999999999
Q ss_pred cCCHHHHHHHHHcCCCCCCC---------CCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHhcCC
Q 044093 182 YNQVDVVKMLTKEDPSLPYD---------ANNAGETPLYLAAERGYINVVEDIIS-TCKSPADHGPMGRTASHAAAFCED 251 (427)
Q Consensus 182 ~~~~~~~~~Ll~~~~~~~~~---------~~~~~~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~l~~a~~~~~ 251 (427)
.|+.++++++++.|+++... .+..|.||||+|+..|+.+++++|++ .|++++..+..|.++++.++..+.
T Consensus 135 ~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~ 214 (337)
T 4g8k_A 135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 214 (337)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSC
T ss_pred cCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcC
Confidence 99999999999999876432 24468999999999999999999996 589999999999999998776443
Q ss_pred ----HHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhc-CchhhhhccCCCCcHHHHHHHcCCHHHHHHH
Q 044093 252 ----TEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKA-DKSAAYKANNKGKIPLHLAALMGRLNTMQEL 326 (427)
Q Consensus 252 ----~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~L 326 (427)
.+++++|++.+.. ++.++..|.||||+|+..++.++++.|++. +.++ +.++..|.||||+|+..|+.+++++|
T Consensus 215 ~~~~~~i~~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-n~~d~~G~TpL~~A~~~g~~~iv~~L 292 (337)
T 4g8k_A 215 DSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-NDTDSDGKTALLLAVELKLKKIAELL 292 (337)
T ss_dssp TTTHHHHHHHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-cCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 3578889988876 788899999999999999999999999986 5555 88999999999999999999999999
Q ss_pred HHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccc
Q 044093 327 IRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEK 373 (427)
Q Consensus 327 l~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~ 373 (427)
+++|++. ++.+|||+|+..++.+++++|+++ ||++|..
T Consensus 293 l~~GAd~------n~~~~L~~A~~~~~~~iv~~Ll~~---GA~~d~~ 330 (337)
T 4g8k_A 293 CKRGAST------DCGDLVMTARRNYDHSLVKVLLSH---GAKEDFH 330 (337)
T ss_dssp HTTSCSS------TTCCHHHHHHHTTCHHHHHHHHHT---TCCC---
T ss_pred HHCCCCC------CCCCHHHHHHHcCCHHHHHHHHHC---cCCCCCC
Confidence 9998653 345799999999999999999999 9999864
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.5e-45 Score=322.96 Aligned_cols=264 Identities=22% Similarity=0.223 Sum_probs=245.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
+|.||||+|+..|+.+++++|++.|++++. ..+..|.||||+|+..|+.+++++|++.|.++. .
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~---------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~ 67 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF---------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-L 67 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC---------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCccc---------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-c
Confidence 478999999999999999999999998876 137789999999999999999999999999876 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC----------CC
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKP----------DQ 271 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~----------~~ 271 (427)
.+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++.. +.
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN-VNLRRKTKEDQERLRK 146 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCCCHHHHHTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC-cccccccHHHHHhhcc
Confidence 778899999999999999999999999999999999999999999999999999999998876 3443 67
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhc-CchhhhhccCCCCcHHHHHHHcCC----HHHHHHHHHhCCCCccccCCCCCcHHH
Q 044093 272 HGWLPLHLAAYLGKHYVVKELLKA-DKSAAYKANNKGKIPLHLAALMGR----LNTMQELIRSCPSSCELVDDRGWNVFH 346 (427)
Q Consensus 272 ~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 346 (427)
.|.||||.|+..++.+++++|++. +.+. +..+..|.||||+|+..++ .+++++|++.+.+ ++.++..|.||||
T Consensus 147 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 147 GGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLI 224 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcCCCCCcHHH
Confidence 799999999999999999999997 7776 7888999999999999999 8999999998765 6788999999999
Q ss_pred HHHHcCCHHHHHHHhc-CCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcccc
Q 044093 347 FALHSGSRRTVELLLK-SPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNH 407 (427)
Q Consensus 347 ~A~~~~~~~~~~~Ll~-~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~ 407 (427)
+|+..++.+++++|++ . |++++.+|..|+||||+|++.++..+ ++|+++||+++.+|.
T Consensus 225 ~A~~~~~~~~v~~Ll~~~---g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQE---HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHHHTTCHHHHHHHHHSS---SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHHHcCCHHHHHHHHhcc---CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 9999999999999998 6 99999999999999999999999999 999999999999873
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.2e-46 Score=341.65 Aligned_cols=299 Identities=20% Similarity=0.174 Sum_probs=270.6
Q ss_pred cCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCH
Q 044093 57 LTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHA 136 (427)
Q Consensus 57 ~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~ 136 (427)
.+..+.++||. |+..|+ .+++++|+ ...+..++..|..|.||||+|+..|+.
T Consensus 20 ~~~~~~~~L~~--A~~~g~-------~~~v~~ll-------------------~~~~~~~~~~d~~g~t~L~~A~~~g~~ 71 (351)
T 3utm_A 20 TGEYKKDELLE--AARSGN-------EEKLMALL-------------------TPLNVNCHASDGRKSTPLHLAAGYNRV 71 (351)
T ss_dssp HHHHHHHHHHH--HHHHTC-------HHHHHHHC-------------------CTTTTTCCCSSTTCCCHHHHHHHTTCH
T ss_pred eccccchhHHH--HHHcCC-------HHHHHHHH-------------------HhcCCCcccCCCCCCCHHHHHHHcCCH
Confidence 55667899999 999999 88888877 444556778899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHc
Q 044093 137 DIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAER 216 (427)
Q Consensus 137 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~ 216 (427)
+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++.++. ..+..|.||||+|+..
T Consensus 72 ~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 134 (351)
T 3utm_A 72 RIVQLLLQHGADVHA----------------KDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASK 134 (351)
T ss_dssp HHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHcCCCCCc----------------cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHc
Confidence 999999999999887 88889999999999999999999999999876 5778899999999999
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 044093 217 GYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKAD 296 (427)
Q Consensus 217 ~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~ 296 (427)
++.+++++|+++|++++..+..|.++++.++..+..+.+.+.... .++..++..+..+.++.++...
T Consensus 135 ~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~ 201 (351)
T 3utm_A 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG-------------HSLLQAAREADLAKVKKTLALE 201 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH-------------HHHHHHHHTTCHHHHHHHTTTC
T ss_pred CCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc-------------cHHHHHHHhccHHHHHHHHHhh
Confidence 999999999999999999999999999999988888887776642 4678889999999999999877
Q ss_pred chhhhhccCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccc
Q 044093 297 KSAAYKANNKGKIPLHLAALM---GRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEK 373 (427)
Q Consensus 297 ~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~ 373 (427)
... ...+..|.||||+|+.. +..+++++|++.+.+ ++.++..|+||||+|+..++.+++++|+++ |+++|.+
T Consensus 202 ~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~~ 276 (351)
T 3utm_A 202 IIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNAL 276 (351)
T ss_dssp CTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCC
T ss_pred ccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCCc
Confidence 655 55677899999999999 568999999998766 678899999999999999999999999999 9999999
Q ss_pred cCCCCchhHHHHhcCchhH-hhhcccccchhcccccCCChhhHHhh
Q 044093 374 NDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDIICS 418 (427)
Q Consensus 374 d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a~~ 418 (427)
|..|+||||+|+..++..+ ++|+++|+|++.+|..|+||+++|..
T Consensus 277 d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~~ 322 (351)
T 3utm_A 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNE 322 (351)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSCH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhhH
Confidence 9999999999999999999 99999999999999999999999854
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-44 Score=317.97 Aligned_cols=235 Identities=22% Similarity=0.201 Sum_probs=220.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 044093 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLP 199 (427)
Q Consensus 120 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~ 199 (427)
+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.|.++.
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 99 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVL----------------RKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 66799999999999999999999999999887 78889999999999999999999999999876
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCC
Q 044093 200 YDANNAGETPLYLAAERGYINVVEDIISTCKSPADH----------GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKP 269 (427)
Q Consensus 200 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~ 269 (427)
..+..|.||||+|+..++.+++++|+++|++++.. +..|.+|||.|+..++.+++++|++..+..++..
T Consensus 100 -~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 178 (285)
T 1wdy_A 100 -ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178 (285)
T ss_dssp -CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC
T ss_pred -ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc
Confidence 67888999999999999999999999999999887 7789999999999999999999999855558888
Q ss_pred CCCCChHHHHHHHcCC----HHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHH
Q 044093 270 DQHGWLPLHLAAYLGK----HYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVF 345 (427)
Q Consensus 270 ~~~~~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 345 (427)
+..|.||||.|+..++ .+++++|++.|.++ +..+..|.||||+|+..++.+++++|++..+.+++.+|..|+|||
T Consensus 179 ~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l 257 (285)
T 1wdy_A 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257 (285)
T ss_dssp CTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHH
T ss_pred CCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHH
Confidence 9999999999999999 99999999999988 788899999999999999999999999966666888999999999
Q ss_pred HHHHHcCCHHHHHHHhcCCCCCCccccccC
Q 044093 346 HFALHSGSRRTVELLLKSPSLGNLVNEKND 375 (427)
Q Consensus 346 ~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~ 375 (427)
|+|+..++.+++++|+++ |++++.+|.
T Consensus 258 ~~A~~~~~~~i~~~Ll~~---Ga~~~~~d~ 284 (285)
T 1wdy_A 258 LLAVELKLKKIAELLCKR---GASTDCGDL 284 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH---SSCSCCSSC
T ss_pred HHHHHcCcHHHHHHHHHc---CCCCCcccc
Confidence 999999999999999999 999999873
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-45 Score=335.12 Aligned_cols=310 Identities=17% Similarity=0.161 Sum_probs=229.8
Q ss_pred HHHHHHhcCchHHHHHHHhhcccccCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHHHHHHHHhhC
Q 044093 33 SLYKAAVEGHTDQFRAHAQMLDQILTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEHFVRGILEMC 112 (427)
Q Consensus 33 ~l~~A~~~g~~~~~~~ll~~~~~~~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~ 112 (427)
+|..|+..|+.+.++.++++...... -.+++.- +...|+ ++++++++
T Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~g~-------~~~~~~~~---------------------- 86 (373)
T 2fo1_E 40 SLLEASYDGYIKRQRNELQHYSLYPN--PQGYGNG--NDFLGD-------FNHTNLQI---------------------- 86 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCccccchhhhhhhhccccC--ccccCCC--CCcccc-------cccccccc----------------------
Confidence 78888899999999999987765521 2345666 888899 99998887
Q ss_pred ccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCC-CCCCcHHHHHHHcCCHHHHHHH
Q 044093 113 PGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTN-EAKDTALHEAVRYNQVDVVKML 191 (427)
Q Consensus 113 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~L 191 (427)
....+..|.||||+|+..+. +++++|+. .+++. .+ ..|.||||+|+..|+.+++++|
T Consensus 87 ---~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~--~~~n~----------------~d~~~g~t~Lh~Aa~~g~~~~v~~L 144 (373)
T 2fo1_E 87 ---PTEPEPESPIKLHTEAAGSY-AITEPITR--ESVNI----------------IDPRHNRTVLHWIASNSSAEKSEDL 144 (373)
T ss_dssp ----------CCCHHHHHHHSSS-CCCSCCST--TTTTT----------------CCCSSCCCHHHHHHCTTCCSCCTTH
T ss_pred ---ccCCCCCCccHHHHHhcCCc-hHHHHhcc--ccccc----------------cCCcCCCCHHHHHHHCCCHHHHHHH
Confidence 33578899999999999664 77777754 33443 55 7899999999999999887777
Q ss_pred H--------HcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 044093 192 T--------KEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKG 263 (427)
Q Consensus 192 l--------~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 263 (427)
+ +.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.
T Consensus 145 l~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 223 (373)
T 2fo1_E 145 IVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223 (373)
T ss_dssp HHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHH
T ss_pred HHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCc
Confidence 6 7888876 678899999999999999999999999999999999999999999999999999999998762
Q ss_pred --CCCCCCCCCCChHHHHHHHcC---CHHHHHHHHhcCchhhh-------hccCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 044093 264 --TLTSKPDQHGWLPLHLAAYLG---KHYVVKELLKADKSAAY-------KANNKGKIPLHLAALMGRLNTMQELIRSCP 331 (427)
Q Consensus 264 --~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~~~~~~~-------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 331 (427)
..++..+..|.||||+|+..+ +.+++++|++.|.+... ..+..|.||||+|+..|+.+++++|++.++
T Consensus 224 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 303 (373)
T 2fo1_E 224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303 (373)
T ss_dssp HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence 336778999999999999998 89999999999988722 256689999999999999999999999987
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccc
Q 044093 332 SSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVD 401 (427)
Q Consensus 332 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad 401 (427)
.+++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..|+..+ ++|+++|++
T Consensus 304 ~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 77899999999999999999999999999999 99999999999999999999999999 999999986
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.5e-42 Score=302.25 Aligned_cols=270 Identities=14% Similarity=0.068 Sum_probs=205.0
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 044093 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSL 198 (427)
Q Consensus 119 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~ 198 (427)
....|.|+||+|+..|+.+.+..++..+....... ......++..+..|.||||+|+..|+.+++++|++.+.++
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~ 85 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85 (285)
T ss_dssp -------------------------------CCSE-----ECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccch-----hhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 45679999999999999877777776643311000 0000113457889999999999999999999999999987
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHH
Q 044093 199 PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLH 278 (427)
Q Consensus 199 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~ 278 (427)
+ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+... +. +..|.||||
T Consensus 86 ~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~g~t~L~ 162 (285)
T 3d9h_A 86 N-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESDLASPIH 162 (285)
T ss_dssp C-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCTTSCHHH
T ss_pred C-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCCCCCHHH
Confidence 6 67888999999999999999999999999999999999999999999999999999999988763 33 445999999
Q ss_pred HHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 044093 279 LAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358 (427)
Q Consensus 279 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 358 (427)
+|+..|+.+++++|++.|.++ +..+..|.||||+|+..++.+++++|++.+.+. + .+..|.||||+|+..++.++++
T Consensus 163 ~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~-~~~~g~t~L~~A~~~~~~~~v~ 239 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADV-N-QGKGQDSPLHAVVRTASEELAC 239 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-T-CCBTTBCHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHH
Confidence 999999999999999999987 788999999999999999999999999997764 4 4889999999999999999999
Q ss_pred HHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhccc-ccchhc
Q 044093 359 LLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHP-KVDRLA 404 (427)
Q Consensus 359 ~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~-gad~~~ 404 (427)
+|+++ |++++.+|..|+||||+|+.. ..+ ++|+++ |+++..
T Consensus 240 ~Ll~~---gad~~~~d~~g~t~l~~A~~~--~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 240 LLMDF---GADTQAKNAEGKRPVELVPPE--SPLAQLFLEREGASLPK 282 (285)
T ss_dssp HHHHT---TCCTTCCCTTSCCGGGGSCTT--SHHHHHHHHHC------
T ss_pred HHHHC---CCCCCCcCCCCCCHHHHhcCc--cHHHHHHHHhhccCCCC
Confidence 99999 999999999999999999943 345 777776 887654
No 11
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=7.2e-41 Score=291.56 Aligned_cols=239 Identities=15% Similarity=0.096 Sum_probs=216.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcC
Q 044093 171 AKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCE 250 (427)
Q Consensus 171 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~ 250 (427)
.|.||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 58899999999999999999999999876 67889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 044093 251 DTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSC 330 (427)
Q Consensus 251 ~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 330 (427)
+.+++++|++.+... +. +..|.||||.|+..|+.+++++|++.|.+. +..+..|.||||+|+..++.+++++|++.+
T Consensus 81 ~~~~v~~Ll~~g~~~-~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 157 (261)
T 2xai_A 81 SWDCVNLLLQHGASV-QP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESG 157 (261)
T ss_dssp CHHHHHHHHHTTCCS-SC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHT
T ss_pred CHHHHHHHHHCCCCC-CC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999999999998763 33 456899999999999999999999999988 788999999999999999999999999998
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhHhhhccccc--------ch
Q 044093 331 PSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQSFVCHPKV--------DR 402 (427)
Q Consensus 331 ~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~~~L~~~ga--------d~ 402 (427)
.+. + .+..|.||||+|+..++.+++++|+++ |++++.+|..|+||||+|+..+. ..++|++++. ++
T Consensus 158 ~~~-~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpl~~A~~~~~-~~~~ll~~~~~~~l~~~~~~ 231 (261)
T 2xai_A 158 ADV-N-QGKGQDSPLHAVARTASEELACLLMDF---GADTQAKNAEGKRPVELVPPESP-LAQLFLEREGPPSLMQLCRL 231 (261)
T ss_dssp CCT-T-CCBTTBCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSCTTCT-HHHHHHHC-CCCCHHHHHHH
T ss_pred CCC-C-CCCCCCChHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCChhhhcccccc-HHHHHHhccCCccHHHHHHH
Confidence 764 4 488999999999999999999999999 99999999999999999997654 2267776654 67
Q ss_pred hcccccCCChhhHHhhc
Q 044093 403 LAFNHHNCSAEDIICSD 419 (427)
Q Consensus 403 ~~~~~~g~t~l~~a~~~ 419 (427)
+.+|..|.||+|+|.+.
T Consensus 232 ~~r~~~g~t~l~~~~~~ 248 (261)
T 2xai_A 232 RIRKCFGIQQHHKITKL 248 (261)
T ss_dssp HHHTTSCTTCGGGGGGS
T ss_pred HHHHHhchhccccCccc
Confidence 78999999999999864
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.7e-41 Score=296.30 Aligned_cols=243 Identities=18% Similarity=0.109 Sum_probs=199.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 044093 169 NEAKDTALHEAVRYNQVDVVKMLTKEDPS----------LPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPM 238 (427)
Q Consensus 169 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~----------~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~ 238 (427)
...|.|+||+|+..|+.+.+..++..++. .....+..|.||||+|+..|+.+++++|++.|++++..+..
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~ 91 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD 91 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCC
Confidence 45688999999999998777776554322 23356789999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcC
Q 044093 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMG 318 (427)
Q Consensus 239 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 318 (427)
|.||||+|+..++.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.+.+. + .+..|.||||+|+..|
T Consensus 92 g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g 168 (285)
T 3d9h_A 92 HVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRG 168 (285)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHT
T ss_pred CCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcC
Confidence 99999999999999999999998766 7788999999999999999999999999999887 3 3446999999999999
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcc
Q 044093 319 RLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCH 397 (427)
Q Consensus 319 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~ 397 (427)
+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++. |++++. |..|.||||+|+..++..+ ++|++
T Consensus 169 ~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~ 243 (285)
T 3d9h_A 169 HVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLES---GADVNQ-GKGQDSPLHAVVRTASEELACLLMD 243 (285)
T ss_dssp CHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHT---TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHC---CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999999999765 678999999999999999999999999999 999995 8999999999999999999 99999
Q ss_pred cccchhcccccCCChhhHHhhc
Q 044093 398 PKVDRLAFNHHNCSAEDIICSD 419 (427)
Q Consensus 398 ~gad~~~~~~~g~t~l~~a~~~ 419 (427)
+|+|++.+|..|+||+|+|+.+
T Consensus 244 ~gad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 244 FGADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp TTCCTTCCCTTSCCGGGGSCTT
T ss_pred CCCCCCCcCCCCCCHHHHhcCc
Confidence 9999999999999999999854
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=6.1e-42 Score=313.51 Aligned_cols=268 Identities=20% Similarity=0.201 Sum_probs=234.1
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 044093 116 LLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195 (427)
Q Consensus 116 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~ 195 (427)
.+..|..|.||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++.+
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~----------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 76 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI----------------QNRFGCTALHLACKFGCVDTAKYLASVG 76 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHHHCCHHHHHHHHHHC
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----------------cCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 456788999999999999999999999999999887 8889999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CCCCCCcHHHHHHhcC--CH
Q 044093 196 PSLPYDANNAGETPLYLAAERGYINVVEDIIST----CKSPAD-----------------HGPMGRTASHAAAFCE--DT 252 (427)
Q Consensus 196 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~----~~~~~~-----------------~~~~~~~~l~~a~~~~--~~ 252 (427)
++.. ...|.||||+|+..|+.+++++|++. +.+++. .+..|.||||+|+..+ +.
T Consensus 77 ~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 153 (364)
T 3ljn_A 77 EVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL 153 (364)
T ss_dssp CCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH
T ss_pred CCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchH
Confidence 9643 45799999999999999999999998 777665 7778999999999999 99
Q ss_pred HHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCch-----hhhhccCCCCcHHHHHHHcCCHHHHHHHH
Q 044093 253 EMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKS-----AAYKANNKGKIPLHLAALMGRLNTMQELI 327 (427)
Q Consensus 253 ~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 327 (427)
+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|++ . +..+..|.||||+|+..|+.+++++|+
T Consensus 154 ~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll 231 (364)
T 3ljn_A 154 EMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-DYANKQGNSHLHWAILINWEDVAMRFV 231 (364)
T ss_dssp HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-TCCCTTCCCTTHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-cccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999766 778889999999999999999999999999887 5 778889999999999999999999999
Q ss_pred HhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccc------------ccCCCCchhHHHHhcCchhH-hh
Q 044093 328 RSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNE------------KNDDGNTPLLEHAVSGSFIQ-SF 394 (427)
Q Consensus 328 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~------------~d~~g~tpL~~a~~~~~~~~-~~ 394 (427)
+.+.+ ++.+|..|.||||+|+..++.+++++|+++ |++++. .+..|.|||++|+..+.... ..
T Consensus 232 ~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ 307 (364)
T 3ljn_A 232 EMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQK---TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307 (364)
T ss_dssp TTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH---SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred HcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHc---CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence 98766 688999999999999999999999999998 766543 56778899999999887766 66
Q ss_pred hcccccchhccccc
Q 044093 395 VCHPKVDRLAFNHH 408 (427)
Q Consensus 395 L~~~gad~~~~~~~ 408 (427)
|+..+++...++..
T Consensus 308 ll~~~~~~~~~~~~ 321 (364)
T 3ljn_A 308 LLQEKLDEVVRSLN 321 (364)
T ss_dssp HHHHHHHHHHTC--
T ss_pred HHHHHHHHHhhccC
Confidence 66667665444433
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9.4e-41 Score=290.83 Aligned_cols=247 Identities=19% Similarity=0.132 Sum_probs=221.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
+|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.|.++. .
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~ 64 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNI----------------ITADHVSPLHEACLGGHLSCVKILLKHGAQVN-G 64 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSC----------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence 589999999999999999999999999887 88899999999999999999999999999876 6
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHH
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAA 281 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~ 281 (427)
.+..|.||||+|+..|+.+++++|+++|++++. +..|.||||+|+..++.+++++|++.+.. ++..+..|.||||+|+
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 142 (261)
T 2xai_A 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLAC 142 (261)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence 788999999999999999999999999999875 45699999999999999999999999876 7778999999999999
Q ss_pred HcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHh
Q 044093 282 YLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL 361 (427)
Q Consensus 282 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 361 (427)
..++.+++++|++.|++. + .+..|.||||+|+..++.+++++|++.+.+ ++.+|..|+||||+|+..+ +++++|+
T Consensus 143 ~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~~--~~~~~ll 217 (261)
T 2xai_A 143 ENQQRACVKKLLESGADV-N-QGKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPES--PLAQLFL 217 (261)
T ss_dssp HTTCHHHHHHHHHHTCCT-T-CCBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTTC--THHHHHH
T ss_pred HhCCHHHHHHHHHcCCCC-C-CCCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhccccc--cHHHHHH
Confidence 999999999999999988 3 478899999999999999999999999766 6889999999999999665 4789999
Q ss_pred cCCC-----CCCccccccCCCCchhHHHHhcCchhH
Q 044093 362 KSPS-----LGNLVNEKNDDGNTPLLEHAVSGSFIQ 392 (427)
Q Consensus 362 ~~~~-----~g~~~n~~d~~g~tpL~~a~~~~~~~~ 392 (427)
++.. ..++++.+|..|+||+|+|.+......
T Consensus 218 ~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~ 253 (261)
T 2xai_A 218 EREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPED 253 (261)
T ss_dssp HC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHH
T ss_pred hccCCccHHHHHHHHHHHHhchhccccCcccCCcHH
Confidence 8711 013677889999999999998765544
No 15
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1e-41 Score=312.17 Aligned_cols=272 Identities=19% Similarity=0.215 Sum_probs=211.5
Q ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHhhcccccC-CCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHH
Q 044093 25 EKNFELMDSLYKAAVEGHTDQFRAHAQMLDQILT-PNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEH 103 (427)
Q Consensus 25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~-~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~ 103 (427)
.++..|.|+||.|+..+ .+++++|+..+++..+ ..|.||||+ |+..|+ .+++++|+ ..
T Consensus 89 ~~~~~g~t~L~~Aa~~~-~~~~~~L~~~~~n~~d~~~g~t~Lh~--Aa~~g~-------~~~v~~Ll-----------~~ 147 (373)
T 2fo1_E 89 EPEPESPIKLHTEAAGS-YAITEPITRESVNIIDPRHNRTVLHW--IASNSS-------AEKSEDLI-----------VH 147 (373)
T ss_dssp -----CCCHHHHHHHSS-SCCCSCCSTTTTTTCCCSSCCCHHHH--HHCTTC-------CSCCTTHH-----------HH
T ss_pred CCCCCCccHHHHHhcCC-chHHHHhccccccccCCcCCCCHHHH--HHHCCC-------HHHHHHHH-----------HH
Confidence 46777889999999955 5899999887777777 789999999 999999 99999998 44
Q ss_pred HHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcC
Q 044093 104 FVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYN 183 (427)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~ 183 (427)
.++.+++. ...++..|..|.||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..|
T Consensus 148 ~~~~ll~~-ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~----------------~~~~g~t~L~~A~~~g 210 (373)
T 2fo1_E 148 EAKECIAA-GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI----------------YNKSERSALHQAAANR 210 (373)
T ss_dssp HHHHHHHT-CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC----------------CCTTCCCHHHHHHHTT
T ss_pred HHHHHHhc-CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc----------------cCCCCCCHHHHHHHCC
Confidence 44445444 345778899999999999999999999999999999886 7888999999999999
Q ss_pred CHHHHHHHHHcC---CCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHH
Q 044093 184 QVDVVKMLTKED---PSLPYDANNAGETPLYLAAERG---YINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKV 257 (427)
Q Consensus 184 ~~~~~~~Ll~~~---~~~~~~~~~~~~t~L~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~ 257 (427)
+.+++++|++.+ .++. ..+..|.||||+|+..+ +.+++++|+++|++++..+.
T Consensus 211 ~~~~v~~Ll~~~~~~~~~~-~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~-------------------- 269 (373)
T 2fo1_E 211 DFGMMVYMLNSTKLKGDIE-ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA-------------------- 269 (373)
T ss_dssp CHHHHHHHTTSHHHHHTTS-CCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG--------------------
T ss_pred CHHHHHHHHhcCccccChh-hcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc--------------------
Confidence 999999999887 4544 56778999999999887 78999999999988775321
Q ss_pred HHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcC-chhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccc
Q 044093 258 LLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKAD-KSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCEL 336 (427)
Q Consensus 258 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~ 336 (427)
......+..|.||||+|+..|+.+++++|++.+ .++ +..+..|.||||+|+..|+.+++++|++.+.+ ++.
T Consensus 270 ------~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~ 341 (373)
T 2fo1_E 270 ------ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEA 341 (373)
T ss_dssp ------GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSC
T ss_pred ------cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccC
Confidence 002334556777777777777777777777665 444 66677777777777777777777777777554 566
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHhcC
Q 044093 337 VDDRGWNVFHFALHSGSRRTVELLLKS 363 (427)
Q Consensus 337 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 363 (427)
+|..|+||||+|+..++.+++++|+++
T Consensus 342 ~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 342 VDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp CCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 777777777777777777777777776
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.7e-41 Score=290.44 Aligned_cols=231 Identities=19% Similarity=0.202 Sum_probs=183.0
Q ss_pred hcCCCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 044093 165 LGTTNEAKDTALHEAVRYN-------------QVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKS 231 (427)
Q Consensus 165 ~~~~~~~g~t~L~~a~~~~-------------~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~ 231 (427)
++.+|..|.||||+|+..| +.+++++|++.++++....+..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4558899999999999977 899999999999998777788999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHH
Q 044093 232 PADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPL 311 (427)
Q Consensus 232 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L 311 (427)
++..+..|.||||+|+..++.+++++|++.+....+..+..|.||||+|+..++.+++++|++.|.++ +..+..|.|||
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L 161 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSAL 161 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHH
Confidence 99999999999999999999999999999988678888999999999999999999999999999988 78889999999
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchh
Q 044093 312 HLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFI 391 (427)
Q Consensus 312 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~ 391 (427)
|+|+..++.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|+++ |++++.+|..|+||||+|++.|+.+
T Consensus 162 ~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~g~~~ 237 (253)
T 1yyh_A 162 HWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHD 237 (253)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc---CCCccccccCCCCHHHHHHHcCCHH
Confidence 999999999999999999766 678899999999999999999999999999 9999999999999999999999999
Q ss_pred H-hhhccccc
Q 044093 392 Q-SFVCHPKV 400 (427)
Q Consensus 392 ~-~~L~~~ga 400 (427)
+ ++|.+..-
T Consensus 238 i~~~l~~~~~ 247 (253)
T 1yyh_A 238 IVRLLDLEHH 247 (253)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 9 88876543
No 17
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9.9e-41 Score=294.66 Aligned_cols=252 Identities=21% Similarity=0.150 Sum_probs=192.6
Q ss_pred hcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 044093 165 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSL--PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTA 242 (427)
Q Consensus 165 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~ 242 (427)
++..|..|.||||+|+..|+.+++++|++.+... ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 3458899999999999999999999999998873 33677889999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCC------------CCCCCCChHHHHHHHcCCHHHH-HHHHhcCchhhhhccCCCCc
Q 044093 243 SHAAAFCEDTEMTKVLLSSKGTLTS------------KPDQHGWLPLHLAAYLGKHYVV-KELLKADKSAAYKANNKGKI 309 (427)
Q Consensus 243 l~~a~~~~~~~~~~~Ll~~~~~~~~------------~~~~~~~t~l~~a~~~~~~~~~-~~Ll~~~~~~~~~~~~~g~t 309 (427)
||+|+..++.+++++|++.+..... .....+.++++.++..+..... ..+...+.+. +..+..|.|
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t 160 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHT 160 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGT-TCCCTTSCC
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcC-CCcCCCCcC
Confidence 9999999999999999997754221 1223445666666555543333 3333445554 778889999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcC
Q 044093 310 PLHLAALMGRLNTMQELIRSCPSSCELVD-DRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSG 388 (427)
Q Consensus 310 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~ 388 (427)
|||+|+..|+.+++++|++.+... +..+ ..|+||||+|+..++.+++++|+++ |++++.+|..|+||||+|+..+
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKA---GADPTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCcccccCCCCHHHHHHHcC
Confidence 999999999999999999998774 5555 4599999999999999999999999 9999999999999999999999
Q ss_pred chhH-hhhcccccchhcccccCCChhhHHhhccc
Q 044093 389 SFIQ-SFVCHPKVDRLAFNHHNCSAEDIICSDKL 421 (427)
Q Consensus 389 ~~~~-~~L~~~gad~~~~~~~g~t~l~~a~~~~~ 421 (427)
+..+ ++|+++||+++.+|..|.||+++|..+.+
T Consensus 237 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 237 NPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CHHHHHHHHHTTCCCCCCC---------------
T ss_pred CcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 9999 99999999999999999999999987654
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.9e-40 Score=292.87 Aligned_cols=255 Identities=19% Similarity=0.160 Sum_probs=193.7
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 044093 116 LLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195 (427)
Q Consensus 116 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~ 195 (427)
++.+|..|.||||+|+..|+.++|++|++.|++++. ++..+..|.||||+|+..|+.+++++|+++|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 68 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEY-------------LDLQNDLGQTALHLAAILGEASTVEKLYAAG 68 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGG-------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc-------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 467899999999999999999999999999988432 3348899999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC-------------CCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 044093 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADH-------------GPMGRTASHAAAFCEDTEMTKVLLSSK 262 (427)
Q Consensus 196 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~-------------~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 262 (427)
+++. ..+..|.||||+|+..++.+++++|++++++.... ...+.++++.+...+.......++...
T Consensus 69 a~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (282)
T 1oy3_D 69 AGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147 (282)
T ss_dssp CCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCG
T ss_pred CCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhh
Confidence 9976 67789999999999999999999999998764322 123445555555554444433333333
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhcc-CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCC
Q 044093 263 GTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKAN-NKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRG 341 (427)
Q Consensus 263 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 341 (427)
...++..+..|.||||+|+..|+.+++++|++.|+++ +..+ ..|.||||+|+..++.+++++|++.+.+ ++.++..|
T Consensus 148 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g 225 (282)
T 1oy3_D 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGG 225 (282)
T ss_dssp GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred hhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCC
Confidence 3446778899999999999999999999999999998 5555 4599999999999999999999999665 68899999
Q ss_pred CcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCc
Q 044093 342 WNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGS 389 (427)
Q Consensus 342 ~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~ 389 (427)
+||||+|+..++.+++++|+++ |++++.+|..|.|||++|....+
T Consensus 226 ~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 226 RTPLGSALLRPNPILARLLRAH---GAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CCHHHHHHTSSCHHHHHHHHHT---TCCCCCCC---------------
T ss_pred CCHHHHHHHcCCcHHHHHHHHc---CCCcCcCCCcccccccccCCccc
Confidence 9999999999999999999999 99999999999999999988653
No 19
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.7e-39 Score=278.64 Aligned_cols=229 Identities=24% Similarity=0.216 Sum_probs=203.4
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 044093 166 GTTNEAKDTALHEAVRYNQVDVVKMLTK----EDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRT 241 (427)
Q Consensus 166 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~----~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~ 241 (427)
+.+|..|.||||+|+..|+.+++++|++ .+.++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 81 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT 81 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 4588999999999999999999999997 566654 67788999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCC---CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhcc-CCCCcHHHHHHHc
Q 044093 242 ASHAAAFCEDTEMTKVLLSSKGT---LTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKAN-NKGKIPLHLAALM 317 (427)
Q Consensus 242 ~l~~a~~~~~~~~~~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~ 317 (427)
|||+|+..++.+++++|++.+.. ..+..+..|.||||.|+..++.+++++|++.|.+. +..+ ..|.||||+|+..
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHc
Confidence 99999999999999999998762 46777889999999999999999999999999988 4555 7899999999999
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhc
Q 044093 318 GRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVC 396 (427)
Q Consensus 318 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~ 396 (427)
++.+++++|++.+.+ ++.++..|+||||+|+..++.+++++|+++ |++++.+|..|+||||+|+..+..++ +.|.
T Consensus 161 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~ 236 (241)
T 1k1a_A 161 NSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDILRGKA 236 (241)
T ss_dssp TCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence 999999999999765 678899999999999999999999999998 99999999999999999999999999 8888
Q ss_pred cccc
Q 044093 397 HPKV 400 (427)
Q Consensus 397 ~~ga 400 (427)
+.++
T Consensus 237 ~~~a 240 (241)
T 1k1a_A 237 TRPA 240 (241)
T ss_dssp ----
T ss_pred cCCC
Confidence 8775
No 20
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.5e-39 Score=275.89 Aligned_cols=221 Identities=25% Similarity=0.299 Sum_probs=202.3
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q 044093 166 GTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHA 245 (427)
Q Consensus 166 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~ 245 (427)
+..+..|.||||+|+..|+.+++++|++.|.++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus 5 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 5 KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL 83 (237)
T ss_dssp CCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred ccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence 4488899999999999999999999999999876 567789999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHH
Q 044093 246 AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQE 325 (427)
Q Consensus 246 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 325 (427)
|+..++.+++++|++.+...++..+..|.||||.|+..++.+++++|++.|.++ +..+..|.||||+|+..++.+++++
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999999986667888889999999999999999999999999887 7788899999999999999999999
Q ss_pred HHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH
Q 044093 326 LIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ 392 (427)
Q Consensus 326 Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~ 392 (427)
|++.+.+ ++..+..|.||||+|+..++.+++++|+++ |++++.+|..|+||||+|+..++...
T Consensus 163 Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 163 LLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp HHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHSCTTCHHHH
T ss_pred HHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 9998765 577889999999999999999999999998 99999999999999999999988754
No 21
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.6e-40 Score=302.76 Aligned_cols=247 Identities=18% Similarity=0.176 Sum_probs=221.9
Q ss_pred hcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 044093 165 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASH 244 (427)
Q Consensus 165 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~ 244 (427)
.+..|..|.||||+|+..|+.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++. ..|.||||
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~ 89 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIH 89 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHH
Confidence 34578889999999999999999999999999876 6788999999999999999999999999996553 57999999
Q ss_pred HHHhcCCHHHHHHHHhc----CCCCCCC-----------------CCCCCChHHHHHHHcC--CHHHHHHHHhcCchhhh
Q 044093 245 AAAFCEDTEMTKVLLSS----KGTLTSK-----------------PDQHGWLPLHLAAYLG--KHYVVKELLKADKSAAY 301 (427)
Q Consensus 245 ~a~~~~~~~~~~~Ll~~----~~~~~~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~ 301 (427)
+|+..++.+++++|++. +.. ++. .+..|.||||+|+..| +.+++++|++.|+++ +
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~ 167 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQM-PESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-T 167 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-HHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-T
T ss_pred HHHHcCCHHHHHHHHHhccccCCC-HHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-c
Confidence 99999999999999997 433 222 5678999999999999 999999999999998 7
Q ss_pred hccCCCCcHHHHHHHcCCHHHHHHHHHhCCCC----ccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCC
Q 044093 302 KANNKGKIPLHLAALMGRLNTMQELIRSCPSS----CELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDG 377 (427)
Q Consensus 302 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g 377 (427)
..+..|.||||+|+..|+.+++++|++.++.. ++..+..|+||||+|+..++.+++++|+++ |++++.+|..|
T Consensus 168 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~~~~d~~g 244 (364)
T 3ljn_A 168 AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM---GIDVNMEDNEH 244 (364)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT---TCCTTCCCTTS
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCC
Confidence 88999999999999999999999999987663 678899999999999999999999999999 99999999999
Q ss_pred CchhHHHHhcCchhH-hhhcccccchhc------------ccccCCChhhHHhhc
Q 044093 378 NTPLLEHAVSGSFIQ-SFVCHPKVDRLA------------FNHHNCSAEDIICSD 419 (427)
Q Consensus 378 ~tpL~~a~~~~~~~~-~~L~~~gad~~~------------~~~~g~t~l~~a~~~ 419 (427)
.||||+|+..|+..+ ++|+++|++++. .+..++||++.|+..
T Consensus 245 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~ 299 (364)
T 3ljn_A 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299 (364)
T ss_dssp CCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCC
T ss_pred CCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhc
Confidence 999999999999999 999999999765 556778888777644
No 22
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.9e-39 Score=276.52 Aligned_cols=228 Identities=21% Similarity=0.243 Sum_probs=214.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 044093 169 NEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAF 248 (427)
Q Consensus 169 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~ 248 (427)
+..+.+|||.|+..|+.+.+++++..++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 34578999999999999999999999887666778899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHH
Q 044093 249 CEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIR 328 (427)
Q Consensus 249 ~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 328 (427)
.++.+++++|++.+.. ++..+..|.||||.|+..++.+++++|++.|.++ +..+..|.||||+|+..++.+++++|++
T Consensus 83 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 83 AGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 9999999999998876 6777899999999999999999999999999988 7788899999999999999999999999
Q ss_pred hCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccch
Q 044093 329 SCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDR 402 (427)
Q Consensus 329 ~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~ 402 (427)
.+.+ ++.++..|+||||+|+..++.+++++|+++ |++++.+|..|.||||+|+..++..+ ++|.++|+++
T Consensus 161 ~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 161 YKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM 231 (231)
T ss_dssp TTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred cCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence 8665 677899999999999999999999999999 99999999999999999999999998 9999999874
No 23
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.9e-39 Score=280.13 Aligned_cols=228 Identities=23% Similarity=0.244 Sum_probs=149.2
Q ss_pred cCCCCCceEEEEeeecCC-------------CCCCCCchhhhHHHHHHHHHhhhCCChHHHHHHHHhhCccchhccCCCC
Q 044093 57 LTPNENTILHVHITARPD-------------QTMRPNNELKSSLWMMMSTLKKQSSSSEHFVRGILEMCPGLLLKANTKG 123 (427)
Q Consensus 57 ~~~~~~~~L~~~~A~~~~-------------~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 123 (427)
+|.+|+||||+ |+..| + .+++++|++.|.+ .....+..|
T Consensus 6 ~d~~g~tpL~~--A~~~g~~~~~~~~~~~~~~-------~~~v~~Ll~~g~~-------------------~~~~~d~~g 57 (253)
T 1yyh_A 6 RGPDGFTPLMI--ASCSGGGLETGNSEEEEDA-------PAVISDFIYQGAS-------------------LHNQTDRTG 57 (253)
T ss_dssp --------------------------------------------------------------------------CCCTTS
T ss_pred CCCCCCcHHHH--HHhccccccccchhhcCCC-------hHHHHHHHHccCC-------------------cccccCCCC
Confidence 45566666666 66655 7 7888888755554 233457788
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 044093 124 ETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDAN 203 (427)
Q Consensus 124 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 203 (427)
.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|++.+.......+
T Consensus 58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 121 (253)
T 1yyh_A 58 ETALHLAARYSRSDAAKRLLEASADANI----------------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCC----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence 8888888888888888888888888776 777888888888888888888888888774444667
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHc
Q 044093 204 NAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYL 283 (427)
Q Consensus 204 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~ 283 (427)
..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||||+|+..
T Consensus 122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~ 200 (253)
T 1yyh_A 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAARE 200 (253)
T ss_dssp TTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred CCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHC
Confidence 7888888888888888888888888888887777777777777777777777777776655 555666677777777777
Q ss_pred CCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 044093 284 GKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSC 330 (427)
Q Consensus 284 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 330 (427)
++.+++++|++.|++. +..+..|.||+++|+..|+.+++++|....
T Consensus 201 ~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 201 GSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred CCHHHHHHHHHcCCCc-cccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 7777777777777665 566666777777777777777777766553
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.9e-38 Score=272.56 Aligned_cols=216 Identities=20% Similarity=0.197 Sum_probs=203.4
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q 044093 201 DANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLA 280 (427)
Q Consensus 201 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a 280 (427)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||||.|
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLA 84 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCTTSCCHHHHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHH
Confidence 4677899999999999999999999999999999999999999999999999999999998776 677788999999999
Q ss_pred HHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 044093 281 AYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELL 360 (427)
Q Consensus 281 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 360 (427)
+..|+.+++++|++.+....+..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|
T Consensus 85 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 85 AKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp HHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 9999999999999998544478888999999999999999999999998766 577899999999999999999999999
Q ss_pred hcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcccccCCChhhHHhhccc
Q 044093 361 LKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDIICSDKL 421 (427)
Q Consensus 361 l~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a~~~~~ 421 (427)
++. |++++.+|..|.||||+|+..++..+ ++|+++|+|++.+|..|.||+|+|+..+.
T Consensus 164 l~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 164 LAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence 999 99999999999999999999999999 99999999999999999999999987754
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.1e-38 Score=274.79 Aligned_cols=228 Identities=23% Similarity=0.218 Sum_probs=204.6
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHH----hcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHH
Q 044093 116 LLKANTKGETLLHIAARHGHADIVKDLIA----ECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKML 191 (427)
Q Consensus 116 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L 191 (427)
++..|.+|.||||+||..|+.+++++|++ .|.+++. .+..|.||||+|+..|+.+++++|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~L 65 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI----------------YNNLRQTPLHLAVITTLPSVVRLL 65 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC----------------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc----------------ccccCCCHHHHHHHcCCHHHHHHH
Confidence 45688999999999999999999999997 6777776 888999999999999999999999
Q ss_pred HHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCC
Q 044093 192 TKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCK----SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTS 267 (427)
Q Consensus 192 l~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~ 267 (427)
++.|.++. ..+..|.||||+|+..++.+++++|++.+. +++..+..|.+|||+|+..++.+++++|++.+.. ++
T Consensus 66 l~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~ 143 (241)
T 1k1a_A 66 VTAGASPM-ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-ID 143 (241)
T ss_dssp HHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TT
T ss_pred HHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cc
Confidence 99999876 567889999999999999999999999997 8888999999999999999999999999999877 44
Q ss_pred CCC-CCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHH
Q 044093 268 KPD-QHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFH 346 (427)
Q Consensus 268 ~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~ 346 (427)
..+ ..|.||||.|+..++.+++++|++.|.++ +..+..|.||||+|+..++.+++++|++.+.+ ++.+|..|+||||
T Consensus 144 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~ 221 (241)
T 1k1a_A 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLM 221 (241)
T ss_dssp CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTT
T ss_pred cccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCCCHHH
Confidence 445 78999999999999999999999999998 78899999999999999999999999998766 6789999999999
Q ss_pred HHHHcCCHHHHHHHhcC
Q 044093 347 FALHSGSRRTVELLLKS 363 (427)
Q Consensus 347 ~A~~~~~~~~~~~Ll~~ 363 (427)
+|+..++.++++.|+++
T Consensus 222 ~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 222 VARSRRVIDILRGKATR 238 (241)
T ss_dssp TCSSHHHHHHHTC----
T ss_pred HHHhcCcHHHHhhhccC
Confidence 99999999999999987
No 26
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-39 Score=286.77 Aligned_cols=270 Identities=18% Similarity=0.155 Sum_probs=227.1
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCc
Q 044093 129 IAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGET 208 (427)
Q Consensus 129 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t 208 (427)
.++..++.+.++.++.............. ....+..|.||||.|+..|+.+++++|++.|.+++ ..+..|.|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t 75 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRK-------KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLT 75 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCS-------CCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCB
T ss_pred hHHHHHHHHHHHHHHccccccccccccCc-------ccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence 46777888888888887766544221110 11134567899999999999999999999999876 57788999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 044093 209 PLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYV 288 (427)
Q Consensus 209 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 288 (427)
|||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||||+|+..++.++
T Consensus 76 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~ 154 (299)
T 1s70_B 76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEEL 154 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999876 67779999999999999999999
Q ss_pred HHHHHhc-CchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCC
Q 044093 289 VKELLKA-DKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLG 367 (427)
Q Consensus 289 ~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g 367 (427)
++.++.. +.+. ......+.++++ ..+..++..+.......+..|.||||+|+..|+.+++++|+++ |
T Consensus 155 ~~~ll~~~~~~~-~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g 222 (299)
T 1s70_B 155 LQNEVNRQGVDI-EAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---R 222 (299)
T ss_dssp HHHHHHHHTCCH-HHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---T
T ss_pred HHHHHhhcCCCc-hhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---C
Confidence 9988864 3333 322222223332 3455666776666666788999999999999999999999998 9
Q ss_pred CccccccCCCCchhHHHHhcCchhH-hhhcccccchhcccccCCChhhHHhhc
Q 044093 368 NLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDIICSD 419 (427)
Q Consensus 368 ~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a~~~ 419 (427)
++++.+|..|.||||+|+..|+..+ ++|+++|+|++++|..|+||+|+|+..
T Consensus 223 ~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999999764
No 27
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=279.43 Aligned_cols=230 Identities=20% Similarity=0.172 Sum_probs=177.5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-------CCCCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCC
Q 044093 168 TNEAKDTALHEAVRYNQVDVVKMLTKEDPSLP-------YDANNAGETPLYLAAERGYI-NVVEDIISTCKSPADHGPMG 239 (427)
Q Consensus 168 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~-------~~~~~~~~t~L~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~ 239 (427)
+|..+.+||+.|+..|+.++|++|++.+.... ...+..+.|||+.|+..+.. .+++.|++.|++++..+..|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 67778899999999999999999999887532 23456789999999987765 58899999999999999999
Q ss_pred CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCC
Q 044093 240 RTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGR 319 (427)
Q Consensus 240 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 319 (427)
.||||+|+..|+.+++++|++.+.. ++..+..|.||++.|+..++.+++++|++.|+++ +..+..|.||||+|+..|+
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~ 164 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGH 164 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTC
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCC
Confidence 9999999999999999999998876 6777899999999999999999999999999998 7889999999999999999
Q ss_pred HHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCch-hH-hhhcc
Q 044093 320 LNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSF-IQ-SFVCH 397 (427)
Q Consensus 320 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~-~~-~~L~~ 397 (427)
.+++++|++.+.+ ++.++..|+||||+|+..|+.+++++|+++ |+|++.+|..|+||||+|+++++. ++ +.|..
T Consensus 165 ~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~ 240 (269)
T 4b93_B 165 HELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLH---GASVQVLNKRQRTAVDCAEQNSKIMELLQVVPS 240 (269)
T ss_dssp GGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---
T ss_pred HHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHH
Confidence 9999999999766 688999999999999999999999999999 999999999999999999988863 33 66666
Q ss_pred cccchh
Q 044093 398 PKVDRL 403 (427)
Q Consensus 398 ~gad~~ 403 (427)
.+++++
T Consensus 241 ~~~~~~ 246 (269)
T 4b93_B 241 CVASLD 246 (269)
T ss_dssp ------
T ss_pred hchhhh
Confidence 666544
No 28
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.4e-38 Score=267.22 Aligned_cols=213 Identities=24% Similarity=0.242 Sum_probs=170.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHh
Q 044093 172 KDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTC--KSPAD-HGPMGRTASHAAAF 248 (427)
Q Consensus 172 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~--~~~~~-~~~~~~~~l~~a~~ 248 (427)
|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|+++| .+++. .+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6789999999999999999999988877667888999999999999999999999998 44444 66778888888888
Q ss_pred cCCHHHHHHHHhcC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHH
Q 044093 249 CEDTEMTKVLLSSK-GTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELI 327 (427)
Q Consensus 249 ~~~~~~~~~Ll~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 327 (427)
.++.+++++|++.+ ....+..+..|.||||.|+..++.+++++|++.|.++ +..+..|.||||+|+..++.+++++|+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 88888888888776 1335666777888888888888888888888887776 667777888888888888888888888
Q ss_pred HhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHh-cCCCCCCccccccCCCCchhHHHHhcC
Q 044093 328 RSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL-KSPSLGNLVNEKNDDGNTPLLEHAVSG 388 (427)
Q Consensus 328 ~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~~~~g~~~n~~d~~g~tpL~~a~~~~ 388 (427)
+.++.+++.+|..|+||||+|+..++.+++++|+ +. |++++.+|..|.||||+|+..+
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCSSTT
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHHHHH
Confidence 8775666777788888888888888888888888 66 8888888888888888886543
No 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=7.6e-39 Score=285.02 Aligned_cols=249 Identities=20% Similarity=0.224 Sum_probs=211.3
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 044093 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSL 198 (427)
Q Consensus 119 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~ 198 (427)
.+..|.||||.||..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++.|+++
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 99 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINY----------------ANVDGLTALHQACIDDNVDMVKFLVENGANI 99 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC----------------BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc----------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 445678999999999999999999999999887 7888999999999999999999999999987
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHH
Q 044093 199 PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLH 278 (427)
Q Consensus 199 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~ 278 (427)
. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+..++++.++...+...+.....+.+++
T Consensus 100 ~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~- 177 (299)
T 1s70_B 100 N-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM- 177 (299)
T ss_dssp T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH-
T ss_pred C-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHH-
Confidence 6 57788999999999999999999999999999999999999999999999999999988765443222111111222
Q ss_pred HHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 044093 279 LAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVE 358 (427)
Q Consensus 279 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~ 358 (427)
...+..++..+.......+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.++++
T Consensus 178 -------~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~ 249 (299)
T 1s70_B 178 -------LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACR 249 (299)
T ss_dssp -------HHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred -------HHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHH
Confidence 23455566666555456677899999999999999999999998755 6889999999999999999999999
Q ss_pred HHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhc
Q 044093 359 LLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVC 396 (427)
Q Consensus 359 ~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~ 396 (427)
+|+++ |++++.+|..|+||||+|++.....+ +++.
T Consensus 250 ~Ll~~---gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~ 285 (299)
T 1s70_B 250 ILVEN---LCDMEAVNKVGQTAFDVADEDILGYLEELQK 285 (299)
T ss_dssp HHHHT---TCCTTCCCTTSCCTTTSCCSGGGHHHHHHHH
T ss_pred HHHHc---CCCCCCcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999987655555 4433
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=264.78 Aligned_cols=228 Identities=20% Similarity=0.224 Sum_probs=157.4
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 044093 117 LKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDP 196 (427)
Q Consensus 117 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~ 196 (427)
...|..|.|||++|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+.
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ----------------PDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCC----------------CCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 35677888999999999999999999999988776 77889999999999999999999999988
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChH
Q 044093 197 SLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLP 276 (427)
Q Consensus 197 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~ 276 (427)
......+..|.||||+|+..++.+++++|++.|++++..+..|.+|||.|+..++.+++++|++.+.. ++..+..|.||
T Consensus 67 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~ 145 (240)
T 3eu9_A 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTP 145 (240)
T ss_dssp CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC-ccccCCCCCcH
Confidence 87766666788999999999999999999998888887777777777777777777777777766554 44555556666
Q ss_pred HHHHHHcCC-HHHHHHHHhcCchhhhhccC-CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCH
Q 044093 277 LHLAAYLGK-HYVVKELLKADKSAAYKANN-KGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSR 354 (427)
Q Consensus 277 l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~ 354 (427)
||.|+..++ .+++++|++.+.+. +..+. .|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..++.
T Consensus 146 l~~a~~~~~~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~ 223 (240)
T 3eu9_A 146 LMWAAYRTHSVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNV 223 (240)
T ss_dssp HHHHHHHCCSSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCH
T ss_pred HHHHHHhCChHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcH
Confidence 666654443 45555555555544 22222 444555555555555555555544322 344444445555555555555
Q ss_pred HHHHHHhcC
Q 044093 355 RTVELLLKS 363 (427)
Q Consensus 355 ~~~~~Ll~~ 363 (427)
+++++|++.
T Consensus 224 ~~v~~L~~~ 232 (240)
T 3eu9_A 224 WMINHLQEA 232 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555444
No 31
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2e-37 Score=265.06 Aligned_cols=228 Identities=22% Similarity=0.209 Sum_probs=210.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 044093 121 TKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPY 200 (427)
Q Consensus 121 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~ 200 (427)
..+.+|||.|+..|+.+.+++|++.+... ++..+..|.||||+|+..|+.+++++|++.+.++.
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~- 67 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSL---------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN- 67 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGG---------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhh---------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-
Confidence 45789999999999999999999986542 23478899999999999999999999999999876
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q 044093 201 DANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLA 280 (427)
Q Consensus 201 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a 280 (427)
..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||||.|
T Consensus 68 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A 146 (231)
T 3aji_A 68 DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRA 146 (231)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHH
Confidence 6778899999999999999999999999999999999999999999999999999999998776 677789999999999
Q ss_pred HHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 044093 281 AYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELL 360 (427)
Q Consensus 281 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 360 (427)
+..++.+++++|++.|.++ +..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|
T Consensus 147 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 147 AAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 9999999999999999988 78889999999999999999999999999766 578999999999999999999999999
Q ss_pred hcCCCCCCcc
Q 044093 361 LKSPSLGNLV 370 (427)
Q Consensus 361 l~~~~~g~~~ 370 (427)
.++ |+++
T Consensus 225 ~~~---~a~i 231 (231)
T 3aji_A 225 EGE---EASM 231 (231)
T ss_dssp HHH---HHCC
T ss_pred ccc---cccC
Confidence 987 6653
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.5e-37 Score=263.99 Aligned_cols=209 Identities=27% Similarity=0.307 Sum_probs=192.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHHHHHHhcCCHHHHHHHHhcC--CCCCCCCCCCCChHHHHHHH
Q 044093 206 GETPLYLAAERGYINVVEDIISTCKSPAD-HGPMGRTASHAAAFCEDTEMTKVLLSSK--GTLTSKPDQHGWLPLHLAAY 282 (427)
Q Consensus 206 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~-~~~~~~~~l~~a~~~~~~~~~~~Ll~~~--~~~~~~~~~~~~t~l~~a~~ 282 (427)
|.||||+|+..|+.+++++|++.+.+... .+..|.||||+|+..++.+++++|++.+ .......+..|.||||.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 78999999999999999999999977654 8899999999999999999999999988 44233378899999999999
Q ss_pred cCCHHHHHHHHhcC--chhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 044093 283 LGKHYVVKELLKAD--KSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELL 360 (427)
Q Consensus 283 ~~~~~~~~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 360 (427)
.|+.+++++|++.| .+. +..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999998 665 77888999999999999999999999999655 678999999999999999999999999
Q ss_pred hcCCCCC-CccccccCCCCchhHHHHhcCchhH-hhhc-ccccchhcccccCCChhhHHhhc
Q 044093 361 LKSPSLG-NLVNEKNDDGNTPLLEHAVSGSFIQ-SFVC-HPKVDRLAFNHHNCSAEDIICSD 419 (427)
Q Consensus 361 l~~~~~g-~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~-~~gad~~~~~~~g~t~l~~a~~~ 419 (427)
++. | ++++.+|..|+||||+|+..++..+ ++|+ ++|+|++.+|..|+||+++|+..
T Consensus 160 l~~---g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 160 CGL---GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HTT---TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred Hhc---CcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 998 8 9999999999999999999999999 9999 99999999999999999999764
No 33
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.7e-37 Score=262.82 Aligned_cols=216 Identities=20% Similarity=0.230 Sum_probs=202.4
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 044093 183 NQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSK 262 (427)
Q Consensus 183 ~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 262 (427)
|+.+++++|++.+.++....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 67788999999999988777889999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC
Q 044093 263 GTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGW 342 (427)
Q Consensus 263 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 342 (427)
....+..+..|.||||.|+..++.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 159 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREE 159 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCC
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCc
Confidence 8778888999999999999999999999999999987 78889999999999999999999999999655 678899999
Q ss_pred cHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchh
Q 044093 343 NVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRL 403 (427)
Q Consensus 343 t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~ 403 (427)
||||+|+..++.+++++|+++ |++++.+|..|.||||+|++.++..+ ++|+++|+...
T Consensus 160 t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 160 TPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp CHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred CHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 999999999999999999999 99999999999999999999999999 99999999743
No 34
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-38 Score=276.09 Aligned_cols=214 Identities=21% Similarity=0.241 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHhhcccc----------cCCCCCceEEEEeeecCCCCCCCCchhh-hHHHHHHHH
Q 044093 25 EKNFELMDSLYKAAVEGHTDQFRAHAQMLDQI----------LTPNENTILHVHITARPDQTMRPNNELK-SSLWMMMST 93 (427)
Q Consensus 25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~----------~~~~~~~~L~~~~A~~~~~~~~~~~~~~-~~~~L~~~g 93 (427)
.+|..+.++|+.||..|++++|++|++.+.+. .+..|.||||+ |+..++ .+ ++++|++.|
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~--a~~~~~-------~~~~v~~Ll~~G 76 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQ--CPKCAP-------AQKRLAKVPASG 76 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------CC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHH--HHHhCC-------HHHHHHHHHHCC
Confidence 46777899999999999999999999987542 45567777777 777666 43 566666444
Q ss_pred HhhhCCChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCC
Q 044093 94 LKKQSSSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKD 173 (427)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~ 173 (427)
++ ++..|.+|.||||+|+..|+.++|++|++.|++++. .+..|.
T Consensus 77 ad--------------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~----------------~~~~g~ 120 (269)
T 4b93_B 77 LG--------------------VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA----------------RNADQA 120 (269)
T ss_dssp CC--------------------TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC----------------CCTTCC
T ss_pred CC--------------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc----------------cCCCCC
Confidence 43 556677777777777777777777777777777665 666777
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHH
Q 044093 174 TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTE 253 (427)
Q Consensus 174 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~ 253 (427)
||++.|+..++.+++++|++.|.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus 121 t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~ 199 (269)
T 4b93_B 121 VPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199 (269)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred CccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHH
Confidence 77777777777777777777777765 55667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCCCCCCCCCCChHHHHHHHcCC
Q 044093 254 MTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGK 285 (427)
Q Consensus 254 ~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~ 285 (427)
++++|++.+.+ ++..+..|.||||+|+++++
T Consensus 200 ~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 200 VVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH
T ss_pred HHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc
Confidence 77777776655 56667777777777766654
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=2.2e-37 Score=272.68 Aligned_cols=224 Identities=16% Similarity=0.075 Sum_probs=204.6
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 044093 168 TNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAA 247 (427)
Q Consensus 168 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~ 247 (427)
+|..|.||||+|+..|+.+++++|++.|++++.. .|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~ 103 (285)
T 3kea_A 27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAV 103 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH
Confidence 8899999999999999999999999999987633 4899999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHhcCCCCCCCCCCCC-ChHHHHHHHcCCHHHHHHHHhcCchhhhhccC-CCCcHHHHHHHcCCHHHHHH
Q 044093 248 FCEDTEMTKVLLSSKGTLTSKPDQHG-WLPLHLAAYLGKHYVVKELLKADKSAAYKANN-KGKIPLHLAALMGRLNTMQE 325 (427)
Q Consensus 248 ~~~~~~~~~~Ll~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~~~~ 325 (427)
..++.+++++|++.+.. ++..+..| .||||+|+..|+.+++++|++.|++. .+. .|.||||+|+..|+.+++++
T Consensus 104 ~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 104 DSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHH
Confidence 99999999999999776 67778888 79999999999999999999999876 233 88999999999999999999
Q ss_pred HHHhCCCCccccCCCCCcH-HHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchh
Q 044093 326 LIRSCPSSCELVDDRGWNV-FHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRL 403 (427)
Q Consensus 326 Ll~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~ 403 (427)
|++.+.+ ++.++..|+|| ||+|+..++.+++++|+++ |++++.+| +.|+..++.++ ++|+++|++++
T Consensus 180 Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 180 LLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSAN-------LENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp HHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred HHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence 9999765 67899999998 9999999999999999999 99999998 35677889999 99999999987
Q ss_pred cccccC
Q 044093 404 AFNHHN 409 (427)
Q Consensus 404 ~~~~~g 409 (427)
......
T Consensus 249 ~~~~~~ 254 (285)
T 3kea_A 249 SDSYTK 254 (285)
T ss_dssp TCTTTT
T ss_pred Cccccc
Confidence 765433
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.7e-37 Score=273.35 Aligned_cols=231 Identities=16% Similarity=0.140 Sum_probs=207.8
Q ss_pred chhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044093 115 LLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKE 194 (427)
Q Consensus 115 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 194 (427)
.++..|..|.||||+|+..|+.+++++|++.|++++. . +|.||||+|+..|+.+++++|+++
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~--~g~t~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL----------------L--ENEFPLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC----------------C--TTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----------------C--CCCCHHHHHHHcCCHHHHHHHHHC
Confidence 3678999999999999999999999999999998876 4 389999999999999999999999
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCC
Q 044093 195 DPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMG-RTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHG 273 (427)
Q Consensus 195 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~ 273 (427)
|+++. ..+..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..++.+++++|++.+..... ...|
T Consensus 85 ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g 161 (285)
T 3kea_A 85 GLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAIL 161 (285)
T ss_dssp TCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTH
T ss_pred CCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCC
Confidence 99976 578899999999999999999999999999999999999 8999999999999999999999876422 2388
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcH-HHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC
Q 044093 274 WLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIP-LHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSG 352 (427)
Q Consensus 274 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~ 352 (427)
.||||+|+..|+.+++++|++.|+++ +..+..|.|| ||+|+..++.+++++|+++|.+ ++..+ +.|+..+
T Consensus 162 ~t~L~~A~~~g~~~~v~~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~ 232 (285)
T 3kea_A 162 LSCIHITIKNGHVDMMILLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLD 232 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTT
T ss_pred ccHHHHHHHcChHHHHHHHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcC
Confidence 99999999999999999999999998 7889999998 9999999999999999999766 45454 3667899
Q ss_pred CHHHHHHHhcCCCCCCccccccCCCC
Q 044093 353 SRRTVELLLKSPSLGNLVNEKNDDGN 378 (427)
Q Consensus 353 ~~~~~~~Ll~~~~~g~~~n~~d~~g~ 378 (427)
+.+++++|+++ |++++.......
T Consensus 233 ~~~iv~~Ll~~---g~~~~~~~~~~~ 255 (285)
T 3kea_A 233 DAEIAKMIIEK---HVEYKSDSYTKD 255 (285)
T ss_dssp CHHHHHHHHHH---HHHHTTCTTTTT
T ss_pred CHHHHHHHHHc---CCCCCCccccch
Confidence 99999999999 998876654443
No 37
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=6.8e-39 Score=287.97 Aligned_cols=297 Identities=12% Similarity=0.047 Sum_probs=164.5
Q ss_pred CCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHH
Q 044093 59 PNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADI 138 (427)
Q Consensus 59 ~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 138 (427)
..+.+|+|. .. .++++||++.|++ ++..+..|.|+++ |+.++
T Consensus 21 ~~~~~~~~~------~~-------~dlv~~ll~~ga~--------------------i~~~~~~g~~~~~-----g~~~~ 62 (327)
T 1sw6_A 21 DRTAGPIIT------FT-------HDLTSDFLSSPLK--------------------IMKALPSPVVNDN-----EQKMK 62 (327)
T ss_dssp ----CCEEE------CC-------TTCCCSTTTSSCC--------------------CEECBCCCCCCCH-----HHHHH
T ss_pred cccccchhh------hc-------CchHHHHhhCCcc--------------------cccCCCCCCcccC-----chhHH
Confidence 445666766 56 6788898855554 6678889999977 99999
Q ss_pred HHHHHHhcCCCCCCCCcchhHHHHHH-hcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcC
Q 044093 139 VKDLIAECKKPHQNDPEKGVEAARLM-LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERG 217 (427)
Q Consensus 139 v~~Ll~~g~~~~~~~~~~~~~~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~ 217 (427)
|+.|+++|++++.............. -........+.+|.|+..+..+++++|++.+.+++...+..|.||||+|+..|
T Consensus 63 v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g 142 (327)
T 1sw6_A 63 LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIA 142 (327)
T ss_dssp HHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTT
T ss_pred HHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcC
Confidence 99999999886641110000000000 00011111233466666666677777777777665335667777777777777
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCC---HHHHHHHHhcCCCCCCCCCCCCChHHHHHHH----cCCHHHHH
Q 044093 218 YINVVEDIISTCKSPADHGPMGRTASHAAAFCED---TEMTKVLLSSKGTLTSKPDQHGWLPLHLAAY----LGKHYVVK 290 (427)
Q Consensus 218 ~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~ 290 (427)
+.+++++|+++|++++..+..|.||||+|+..++ .++++.|++.+...++..+..|.||||+|+. .++.++++
T Consensus 143 ~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~ 222 (327)
T 1sw6_A 143 NLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK 222 (327)
T ss_dssp CHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHH
Confidence 7777777777777777777777777777777666 4445555544433355566667777777776 66677777
Q ss_pred HHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcc
Q 044093 291 ELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLV 370 (427)
Q Consensus 291 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~ 370 (427)
+|++.+........ +... ...+.+. +.+++.++..|.||||+|+. +++|+++ ++
T Consensus 223 ~Ll~~~~~~~~~~~--~~~i------------~~~~~~~-g~~~~~~~~~g~t~L~~a~~------~~~Ll~~-----~~ 276 (327)
T 1sw6_A 223 YYLDILMGWIVKKQ--NRPI------------QSGTNEK-ESKPNDKNGERKDSILENLD------LKWIIAN-----ML 276 (327)
T ss_dssp HHHHHHHHHHHHGG--GCCE------------EEC-----------------CHHHHHCS------HHHHHHH-----TT
T ss_pred HHHHHHHHHHhccc--chHH------------Hhhhhcc-cCCcccccccCCChhHHHHH------HHHHHHh-----CC
Confidence 77665432211000 0000 0000111 33345566667777776664 6666643 46
Q ss_pred ccccCCCCchhHHHHhcCchhH-hhhcccccchhcccccCCChhhHHhhc
Q 044093 371 NEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDIICSD 419 (427)
Q Consensus 371 n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a~~~ 419 (427)
|.+|..|+||||+|+..|+..+ ++|+++|||++++|..|+||||+|+..
T Consensus 277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 6667777777777777776666 777777777777777777777776653
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=261.09 Aligned_cols=232 Identities=20% Similarity=0.209 Sum_probs=207.6
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q 044093 167 TTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHG-PMGRTASHA 245 (427)
Q Consensus 167 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~l~~ 245 (427)
..|..|.+||+.|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++++.+++... ..+.|||++
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 367889999999999999999999999998875 567889999999999999999999999999887655 448999999
Q ss_pred HHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCC-HHHHH
Q 044093 246 AAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGR-LNTMQ 324 (427)
Q Consensus 246 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~-~~~~~ 324 (427)
|+..++.+++++|++.+.. ++..+..|.||||.|+..++.+++++|++.|.+. +..+..|.||||+|+..+. .++++
T Consensus 83 A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred HHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHH
Confidence 9999999999999998766 6777899999999999999999999999999987 7888999999999997666 88999
Q ss_pred HHHHhCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccch
Q 044093 325 ELIRSCPSSCELVDD-RGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDR 402 (427)
Q Consensus 325 ~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~ 402 (427)
+|++.+.+. +..+. .|.||||+|+..++.+++++|+++ |++++.+|..|.||||+|++.++..+ ++|+++|++.
T Consensus 161 ~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 161 LLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEA---GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 999987664 55665 899999999999999999999999 99999999999999999999999999 9999999886
Q ss_pred hcc
Q 044093 403 LAF 405 (427)
Q Consensus 403 ~~~ 405 (427)
...
T Consensus 237 ~~~ 239 (240)
T 3eu9_A 237 GYD 239 (240)
T ss_dssp ---
T ss_pred CcC
Confidence 543
No 39
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-38 Score=286.23 Aligned_cols=248 Identities=14% Similarity=0.098 Sum_probs=149.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
.+.+|+| ....++|++|++.|++++. .+..|.++++ |+.+++++|+++|.+..
T Consensus 22 ~~~~~~~----~~~~dlv~~ll~~ga~i~~----------------~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~-- 74 (327)
T 1sw6_A 22 RTAGPII----TFTHDLTSDFLSSPLKIMK----------------ALPSPVVNDN-----EQKMKLEAFLQRLLFPE-- 74 (327)
T ss_dssp ---CCEE----ECCTTCCCSTTTSSCCCEE----------------CBCCCCCCCH-----HHHHHHHHHHHHHHC----
T ss_pred ccccchh----hhcCchHHHHhhCCccccc----------------CCCCCCcccC-----chhHHHHHHHHhccCCc--
Confidence 3444554 4556779999999998876 7778888877 88999999998886632
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCC-CCCCCChHHHHH
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSK-PDQHGWLPLHLA 280 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~~~t~l~~a 280 (427)
.+++++|+..... ..............|.++..+..++++.|++.+.. ++. .+..|.||||+|
T Consensus 75 -----~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~A 138 (327)
T 1sw6_A 75 -----IQEMPTSLNNDSS----------NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWL 138 (327)
T ss_dssp --------------------------------------------CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHH
T ss_pred -----cccchHhhhcccc----------cccccccCCccchhHHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHH
Confidence 1334444322100 00000111112234556666666666666666554 444 567777777777
Q ss_pred HHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCC---HHHHHHHHHhCCCCccccCCCCCcHHHHHHH----cCC
Q 044093 281 AYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGR---LNTMQELIRSCPSSCELVDDRGWNVFHFALH----SGS 353 (427)
Q Consensus 281 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~----~~~ 353 (427)
+..|+.+++++|++.|+++ +..+..|.||||+|+..|+ .++++.|++.+...++.++..|+||||+|+. .++
T Consensus 139 a~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~ 217 (327)
T 1sw6_A 139 TSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC 217 (327)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC
T ss_pred HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc
Confidence 7777777777777777766 5667777777777777766 5666666666545566677777777777777 677
Q ss_pred HHHHHHHhcCC-----------------CCCCccccccCCCCchhHHHHhcCchhHhhhcccccchhcccccCCChhhHH
Q 044093 354 RRTVELLLKSP-----------------SLGNLVNEKNDDGNTPLLEHAVSGSFIQSFVCHPKVDRLAFNHHNCSAEDII 416 (427)
Q Consensus 354 ~~~~~~Ll~~~-----------------~~g~~~n~~d~~g~tpL~~a~~~~~~~~~~L~~~gad~~~~~~~g~t~l~~a 416 (427)
.+++++|++.. ..|++++.++..|.||||+|+. +++|+++ +++.+|..|+||||+|
T Consensus 218 ~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~-----~~~Ll~~--~~n~~d~~G~TpLh~A 290 (327)
T 1sw6_A 218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD-----LKWIIAN--MLNAQDSNGDTCLNIA 290 (327)
T ss_dssp HHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS-----HHHHHHH--TTTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH-----HHHHHHh--CCCCCCCCCCCHHHHH
Confidence 77777776541 1289999999999999999986 6677777 6899999999999999
Q ss_pred hhcc
Q 044093 417 CSDK 420 (427)
Q Consensus 417 ~~~~ 420 (427)
+..+
T Consensus 291 ~~~g 294 (327)
T 1sw6_A 291 ARLG 294 (327)
T ss_dssp HHHC
T ss_pred HHcC
Confidence 9865
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2e-35 Score=251.20 Aligned_cols=199 Identities=24% Similarity=0.272 Sum_probs=152.5
Q ss_pred hhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 044093 116 LLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKED 195 (427)
Q Consensus 116 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~ 195 (427)
....+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|++.+
T Consensus 18 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 18 HNQTDRTGETALHLAARYSRSDAAKRLLEASADANI----------------QDNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred ccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 344577888889998888888888888888888776 7778888888888888888888888888
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCh
Q 044093 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWL 275 (427)
Q Consensus 196 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t 275 (427)
+......+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.|
T Consensus 82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 160 (223)
T 2f8y_A 82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREET 160 (223)
T ss_dssp TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCC
T ss_pred CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcC
Confidence 744446677888888888888888888888888888887777777777777777777777777777554 5556666777
Q ss_pred HHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Q 044093 276 PLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPS 332 (427)
Q Consensus 276 ~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 332 (427)
|||.|++.++.+++++|++.|+++ +..+..|.|||++|+..++.+++++|++.+..
T Consensus 161 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 161 PLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 777777777777777777776665 55666666677766666666666666666544
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=5.7e-36 Score=256.79 Aligned_cols=210 Identities=22% Similarity=0.210 Sum_probs=146.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHH
Q 044093 205 AGETPLYLAAERGYINVVEDIISTCK----SPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLA 280 (427)
Q Consensus 205 ~~~t~L~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a 280 (427)
.|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||||+|
T Consensus 7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 85 (236)
T 1ikn_D 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLA 85 (236)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHH
T ss_pred CCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHH
Confidence 34444444444444444444433332 3444444444444444444444444444444433 334444555555555
Q ss_pred HHcCCHHHHHHHHhcCch-----hhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCC-CCCcHHHHHHHcCCH
Q 044093 281 AYLGKHYVVKELLKADKS-----AAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDD-RGWNVFHFALHSGSR 354 (427)
Q Consensus 281 ~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~A~~~~~~ 354 (427)
+..++.+++++|++.+.+ .....+..|.||||+|+..++.+++++|++.+.+ ++.++. .|.||||+|+..++.
T Consensus 86 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~ 164 (236)
T 1ikn_D 86 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNP 164 (236)
T ss_dssp HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCH
Confidence 555555555555555432 2356677899999999999999999999999766 466776 999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchh--cccccCCChhhHHhhc
Q 044093 355 RTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRL--AFNHHNCSAEDIICSD 419 (427)
Q Consensus 355 ~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~--~~~~~g~t~l~~a~~~ 419 (427)
+++++|+++ |++++.+|..|.||||+|+..++..+ ++|+++|+++. .++..|.||++.+...
T Consensus 165 ~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 165 DLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp HHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred HHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 999999998 99999999999999999999999999 99999999987 8999999999887644
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5.7e-34 Score=243.74 Aligned_cols=204 Identities=21% Similarity=0.238 Sum_probs=144.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-
Q 044093 122 KGETLLHIAARHGHADIVKDLIAE-CKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLP- 199 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~- 199 (427)
.|.||||+|+..|+.+++++|++. |++++. .+..|.||||+|+..|+.+++++|++.++++.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 65 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQ----------------RGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCccc----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc
Confidence 588999999999999999999997 888876 88889999999999999999999999988752
Q ss_pred ---CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChH
Q 044093 200 ---YDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLP 276 (427)
Q Consensus 200 ---~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~ 276 (427)
...+..|.||||+|+..++.+++++|+++|++++..+..... . ......+..|.||
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--~-------------------~~~~~~~~~g~t~ 124 (232)
T 2rfa_A 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF--H-------------------YRPHNLIYYGEHP 124 (232)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG--S-------------------CCTTCSCCCCSSH
T ss_pred ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce--e-------------------ecccccccCCCCH
Confidence 245668999999999999999999999999888775543210 0 0123334556666
Q ss_pred HHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHH----HHHHHhCCCCc-----cccCCCCCcHHHH
Q 044093 277 LHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTM----QELIRSCPSSC-----ELVDDRGWNVFHF 347 (427)
Q Consensus 277 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll~~~~~~~-----~~~~~~g~t~l~~ 347 (427)
||+|+..|+.+++++|++.|+++ +..+..|.||||+|+..++.+++ ++|++.+.... +.+|..|+||||+
T Consensus 125 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~ 203 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203 (232)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHH
Confidence 66666666666666666666655 55555666666666666665555 55555554432 3455556666666
Q ss_pred HHHcCCHHHHHHHhcC
Q 044093 348 ALHSGSRRTVELLLKS 363 (427)
Q Consensus 348 A~~~~~~~~~~~Ll~~ 363 (427)
|+..++.+++++|+++
T Consensus 204 A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 204 AGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 6666666666666655
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.4e-33 Score=241.21 Aligned_cols=210 Identities=21% Similarity=0.224 Sum_probs=143.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCcHHH
Q 044093 171 AKDTALHEAVRYNQVDVVKMLTKE-DPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSP-----ADHGPMGRTASH 244 (427)
Q Consensus 171 ~g~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~~~~l~ 244 (427)
.|.||||+|+..|+.+++++|++. +.++. ..+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 355666666666666666666665 44433 44555666666666666666666666665543 333444555555
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHH
Q 044093 245 AAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQ 324 (427)
Q Consensus 245 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 324 (427)
+|+..++.+++++|++.+.. ++..+.. +.+. .. ....+..|.||||+|+..|+.++++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~--~~~~------------------~~-~~~~~~~g~t~L~~A~~~~~~~~v~ 138 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGAS-VSARATG--SVFH------------------YR-PHNLIYYGEHPLSFAACVGSEEIVR 138 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCCS--GGGS------------------CC-TTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCC-CCcccCC--ccee------------------ec-ccccccCCCCHHHHHHHcCCHHHHH
Confidence 55555555555555554433 2221111 0000 00 1223457999999999999999999
Q ss_pred HHHHhCCCCccccCCCCCcHHHHHHHcCCHHHH----HHHhcCCCCCCcc------ccccCCCCchhHHHHhcCchhH-h
Q 044093 325 ELIRSCPSSCELVDDRGWNVFHFALHSGSRRTV----ELLLKSPSLGNLV------NEKNDDGNTPLLEHAVSGSFIQ-S 393 (427)
Q Consensus 325 ~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~----~~Ll~~~~~g~~~------n~~d~~g~tpL~~a~~~~~~~~-~ 393 (427)
+|++.+.+ ++.+|..|+||||+|+..++.+++ ++|+++ |+++ +.+|..|.||||+|+..|+.++ +
T Consensus 139 ~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~ 214 (232)
T 2rfa_A 139 LLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY---DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214 (232)
T ss_dssp HHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT---TCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc---CCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence 99999665 688999999999999999999988 999998 9988 6899999999999999999999 9
Q ss_pred hhcccccchhcccc
Q 044093 394 FVCHPKVDRLAFNH 407 (427)
Q Consensus 394 ~L~~~gad~~~~~~ 407 (427)
+|+++|++......
T Consensus 215 ~Ll~~g~~~~~~~~ 228 (232)
T 2rfa_A 215 HLMQKRKHIAAAHH 228 (232)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHhcCccchhhhc
Confidence 99999998766543
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.1e-35 Score=251.42 Aligned_cols=218 Identities=19% Similarity=0.157 Sum_probs=189.2
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHH
Q 044093 167 TTNEAKDTALHEAVRYNQVDVVKMLTKEDPS---LPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTAS 243 (427)
Q Consensus 167 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~---~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l 243 (427)
..|..|.||||+|+..|+.+++++|++.+.. .....+..|.||||+|+..++.+++++|+++|++++..+..|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 3778899999999999999999999988763 2336778899999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcCCC-----CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccC-CCCcHHHHHHHc
Q 044093 244 HAAAFCEDTEMTKVLLSSKGT-----LTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANN-KGKIPLHLAALM 317 (427)
Q Consensus 244 ~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~ 317 (427)
|+|+..++.+++++|++.+.. ..+..+..|.||||+|+..++.+++++|++.|+++ +..+. .|.||||+|+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~ 161 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDL 161 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHc
Confidence 999999999999999998753 24667888999999999999999999999999998 66666 899999999999
Q ss_pred CCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccc--cccCCCCchhHHHHhcCc
Q 044093 318 GRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVN--EKNDDGNTPLLEHAVSGS 389 (427)
Q Consensus 318 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n--~~d~~g~tpL~~a~~~~~ 389 (427)
++.+++++|++.+.+ ++.++..|+||||+|+..++.+++++|+++ |++.. ..+..|.||.+.+.....
T Consensus 162 ~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~---ga~~~~~~~~~~~~~~~~~~~~~~~ 231 (236)
T 1ikn_D 162 QNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL---TLENLQMLPESEDEESYDTESEFTE 231 (236)
T ss_dssp TCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT---SCGGGSSCCCCCTTTCCCCC-----
T ss_pred CCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHc---chhhhhcCCccchHHHHhhhccccc
Confidence 999999999999665 688999999999999999999999999999 99877 888999999887765443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=3.9e-33 Score=233.01 Aligned_cols=192 Identities=19% Similarity=0.232 Sum_probs=111.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcC
Q 044093 171 AKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCE 250 (427)
Q Consensus 171 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~ 250 (427)
.+.||||.|+..|+.+.+++|+..+.......+..|.||||+|+..++.+++++|+++|++++..+..|.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~---------- 73 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISD---------- 73 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC----------
T ss_pred ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC----------
Confidence 4455555555555555555555555422224444555555555555555555555555555555544444
Q ss_pred CHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 044093 251 DTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSC 330 (427)
Q Consensus 251 ~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 330 (427)
||||+|+..++.+++++|++.+....+..+..|.||||+|+..++.+++++|++.+
T Consensus 74 ------------------------t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 74 ------------------------SPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp ------------------------CHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred ------------------------CHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 45555555555555555553332222445555666666666666666666666665
Q ss_pred CCCccccCCCCCcHHHHHHHcCC-----HHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccc
Q 044093 331 PSSCELVDDRGWNVFHFALHSGS-----RRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPK 399 (427)
Q Consensus 331 ~~~~~~~~~~g~t~l~~A~~~~~-----~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~g 399 (427)
+.+++.++..|+||||+|+..++ .+++++|+++ |++++.+|..|.||||+|+..++.++ ++|+++|
T Consensus 130 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN---GADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 45556666666666666666665 6667777766 67777777777777777777666666 6666655
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.6e-32 Score=226.53 Aligned_cols=163 Identities=19% Similarity=0.249 Sum_probs=126.2
Q ss_pred hcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHH
Q 044093 165 LGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDII-STCKSPADHGPMGRTAS 243 (427)
Q Consensus 165 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~l 243 (427)
++..+..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..++.+++++|+ ..+.+++..+..|.|||
T Consensus 32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L 110 (201)
T 3hra_A 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL 110 (201)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHH
Confidence 45667899999999999999999999999999976 57788999999999999999999999 55567888888888888
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCC-----HHHHHHHHhcCchhhhhccCCCCcHHHHHHHcC
Q 044093 244 HAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGK-----HYVVKELLKADKSAAYKANNKGKIPLHLAALMG 318 (427)
Q Consensus 244 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 318 (427)
|+|+..++.+++++|++.+...++..+..|.||||.|+..++ .+++++|++.|+++ +..+..|.||||+|+..+
T Consensus 111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~ 189 (201)
T 3hra_A 111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYANQKG 189 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHcC
Confidence 888888888888888877755566667777777777776665 66666666666555 455555566666666666
Q ss_pred CHHHHHHHHHh
Q 044093 319 RLNTMQELIRS 329 (427)
Q Consensus 319 ~~~~~~~Ll~~ 329 (427)
+.+++++|+++
T Consensus 190 ~~~~~~~Ll~~ 200 (201)
T 3hra_A 190 YTEISKILAQY 200 (201)
T ss_dssp CHHHHHHHHTC
T ss_pred CHhHHHHHHhc
Confidence 66666655554
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=6.2e-33 Score=243.29 Aligned_cols=222 Identities=18% Similarity=0.217 Sum_probs=161.1
Q ss_pred cCCCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCCC---CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCC
Q 044093 166 GTTNEAKDTALHEAVRYNQVDVVKMLTKE----DPSLPY---DANNAGETPLYLAAER---GYINVVEDIISTCKSPADH 235 (427)
Q Consensus 166 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~----~~~~~~---~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~ 235 (427)
+..+..|.||||.|+..|+.++++.|++. +..+.. ..+..|.||||+|+.. |+.+++++|++.|+++..
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~- 85 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS- 85 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC-
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc-
Confidence 35677888888888888888888877763 443321 3466788888888876 888888888887764321
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccC----------
Q 044093 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANN---------- 305 (427)
Q Consensus 236 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~---------- 305 (427)
++.++... ....+..|.||||+|+..|+.+++++|++.|+++ +..+.
T Consensus 86 -------------------~~~~i~~~---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~ 142 (273)
T 2pnn_A 86 -------------------LKQFVNAS---YTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGR 142 (273)
T ss_dssp -------------------HHHHHTCC---CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSS
T ss_pred -------------------hhHHhhcc---cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Ccccccccccccccc
Confidence 11222211 2224557778888888888888888888887776 55554
Q ss_pred ----CCCcHHHHHHHcCCHHHHHHHHHh--CCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHhcCCCCCCcc
Q 044093 306 ----KGKIPLHLAALMGRLNTMQELIRS--CPSSCELVDDRGWNVFHFALHSGS---------RRTVELLLKSPSLGNLV 370 (427)
Q Consensus 306 ----~g~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~g~~~ 370 (427)
.|.||||+|+..|+.+++++|++. .+.+++.+|..|+||||+|+..++ .+++++|+++ |+++
T Consensus 143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~~ 219 (273)
T 2pnn_A 143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL---GAKL 219 (273)
T ss_dssp CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh---hhhc
Confidence 799999999999999999999993 244478899999999999999888 8999999998 9999
Q ss_pred c-------cccCCCCchhHHHHhcCchhH-hhhccccc-chhcccccCCChhh
Q 044093 371 N-------EKNDDGNTPLLEHAVSGSFIQ-SFVCHPKV-DRLAFNHHNCSAED 414 (427)
Q Consensus 371 n-------~~d~~g~tpL~~a~~~~~~~~-~~L~~~ga-d~~~~~~~g~t~l~ 414 (427)
+ .+|..|.||||+|+..|+..+ ++|+++|| |+......+.+|-+
T Consensus 220 n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~ 272 (273)
T 2pnn_A 220 HPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH 272 (273)
T ss_dssp CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred ccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence 7 489999999999999999999 99999999 89988888877754
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=4.4e-32 Score=218.11 Aligned_cols=155 Identities=27% Similarity=0.309 Sum_probs=92.5
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHH
Q 044093 243 SHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNT 322 (427)
Q Consensus 243 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 322 (427)
|+.|+..|+.++++.|++.+.+ ++.++..|.||||+|+..++.+++++|++.|+++ +.++..|.||||+|+..|+.++
T Consensus 8 L~~Aa~~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~~~~ 85 (169)
T 4gpm_A 8 LIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEV 85 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCCHHH
Confidence 4444455555555555444433 3444555555555555555555555555555555 4555566666666666666666
Q ss_pred HHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccc
Q 044093 323 MQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVD 401 (427)
Q Consensus 323 ~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad 401 (427)
+++|++.+.+ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+..|+.++ ++|+++||+
T Consensus 86 v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 86 VKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISK---GADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred HHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 6666666544 455666677777777777777777777766 77777777777777777777776666 777777776
Q ss_pred hh
Q 044093 402 RL 403 (427)
Q Consensus 402 ~~ 403 (427)
++
T Consensus 162 ie 163 (169)
T 4gpm_A 162 LE 163 (169)
T ss_dssp --
T ss_pred cC
Confidence 54
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=4.5e-33 Score=241.79 Aligned_cols=208 Identities=22% Similarity=0.235 Sum_probs=156.2
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCCCCC---CCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCC
Q 044093 171 AKDTALHEAVRYNQVD----VVKMLTKEDPSLPY---DANNAGETPLYLAAER---GYINVVEDIISTCKSPADHGPMGR 240 (427)
Q Consensus 171 ~g~t~L~~a~~~~~~~----~~~~Ll~~~~~~~~---~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~ 240 (427)
+|.||||.|+..|+.+ ++++|++.+.+++. ..+..|.||||+|+.. |+.+++++|++.|++++..+.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~--- 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP--- 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC---
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh---
Confidence 3567777777777765 45555566666552 2566677777777776 777777777776655543220
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCC-------------C
Q 044093 241 TASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNK-------------G 307 (427)
Q Consensus 241 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g 307 (427)
++.. .....+..|.||||+|+..|+.+++++|++.|+++ +..+.. |
T Consensus 78 -----------------~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g 136 (256)
T 2etb_A 78 -----------------LVNA---QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFG 136 (256)
T ss_dssp -----------------GGGC---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSC
T ss_pred -----------------hccc---ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCC
Confidence 0000 01223456777888888878888888888777776 455544 9
Q ss_pred CcHHHHHHHcCCHHHHHHHHHh--CCCCccccCCCCCcHHHHHHH--cCCHH-------HHHHHhcCCCCCCcc------
Q 044093 308 KIPLHLAALMGRLNTMQELIRS--CPSSCELVDDRGWNVFHFALH--SGSRR-------TVELLLKSPSLGNLV------ 370 (427)
Q Consensus 308 ~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~l~~A~~--~~~~~-------~~~~Ll~~~~~g~~~------ 370 (427)
.||||+|+..|+.+++++|++. .+.+++.+|..|+||||+|+. .++.+ ++++|+++ |+++
T Consensus 137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~---ga~~~~~~~~ 213 (256)
T 2etb_A 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM---GARLCPTVQL 213 (256)
T ss_dssp SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH---HHHHSTTCCG
T ss_pred CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc---CCCccccccc
Confidence 9999999999999999999993 344478899999999999999 78888 99999998 9999
Q ss_pred -ccccCCCCchhHHHHhcCchhH-hhhcccccchhcc
Q 044093 371 -NEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAF 405 (427)
Q Consensus 371 -n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~ 405 (427)
+.+|..|+||||+|+..|+..+ ++|+++|+++...
T Consensus 214 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~ 250 (256)
T 2etb_A 214 EEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250 (256)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCc
Confidence 9999999999999999999999 9999999987654
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=1.7e-32 Score=240.53 Aligned_cols=233 Identities=17% Similarity=0.148 Sum_probs=146.9
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHc---CCHHHHHHHHH
Q 044093 117 LKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRY---NQVDVVKMLTK 193 (427)
Q Consensus 117 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~~Ll~ 193 (427)
...+..|.||||+|+..|+.++|+.|++.+.+....... .....+..|.||||+|+.. |+.+++++|++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~ 78 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTD--------SEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD 78 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTS--------GGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCC--------cccccCcCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence 457889999999999999999999999865432221000 0002578899999999987 99999999999
Q ss_pred cCCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 044093 194 EDPSLP----------YDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKG 263 (427)
Q Consensus 194 ~~~~~~----------~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 263 (427)
.|++.. ...+..|.||||+|+..|+.+++++|+++|++++..+..+. .. .
T Consensus 79 ~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~------------------~~--~ 138 (273)
T 2pnn_A 79 VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF------------------FK--K 138 (273)
T ss_dssp HHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG------------------GS--S
T ss_pred hhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc------------------cc--c
Confidence 875421 12456899999999999999999999999999988876320 00 0
Q ss_pred CCCCCCCCCCChHHHHHHHcCCHHHHHHHHh---cCchhhhhccCCCCcHHHHHHHcCC---------HHHHHHHHHhCC
Q 044093 264 TLTSKPDQHGWLPLHLAAYLGKHYVVKELLK---ADKSAAYKANNKGKIPLHLAALMGR---------LNTMQELIRSCP 331 (427)
Q Consensus 264 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~~~~Ll~~~~ 331 (427)
......+..|.||||+|+..|+.+++++|++ .|.++ +..+..|.||||+|+..++ .+++++|++.+.
T Consensus 139 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga 217 (273)
T 2pnn_A 139 TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217 (273)
T ss_dssp CSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhh
Confidence 0122233455666666666666666666666 55555 5555566666666666555 556666666544
Q ss_pred CCc------cccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCC-ccccccCCCCchh
Q 044093 332 SSC------ELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGN-LVNEKNDDGNTPL 381 (427)
Q Consensus 332 ~~~------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~-~~n~~d~~g~tpL 381 (427)
+.. +.+|..|+||||+|+..++.+++++|+++ |+ |+......+.+|-
T Consensus 218 ~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---ga~dp~~~~~~~~~~~ 271 (273)
T 2pnn_A 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR---EIHEPECRHAAAHHHH 271 (273)
T ss_dssp HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH---HTC-------------
T ss_pred hcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC---CCCCchhhhhhhhhcc
Confidence 321 24566677777777777777777777766 66 6666655555543
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.6e-32 Score=236.94 Aligned_cols=215 Identities=20% Similarity=0.167 Sum_probs=139.4
Q ss_pred HHHHHHHHHhcCchH----HHHHHHhhcccc------cCCCCCceEEEEeeecC---CCCCCCCchhhhHHHHHHHHHhh
Q 044093 30 LMDSLYKAAVEGHTD----QFRAHAQMLDQI------LTPNENTILHVHITARP---DQTMRPNNELKSSLWMMMSTLKK 96 (427)
Q Consensus 30 ~~~~l~~A~~~g~~~----~~~~ll~~~~~~------~~~~~~~~L~~~~A~~~---~~~~~~~~~~~~~~~L~~~g~~~ 96 (427)
|.||||.||..|+.+ ++++|++.|+++ .+..|.||||+ |+.. |+ .+++++|++.|++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~--A~~~~~~g~-------~~~v~~Ll~~g~~~ 72 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK--AVLNLQDGV-------NACIMPLLQIDKDS 72 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH--HHHTCBTTB-------CTTHHHHHHHHHHT
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH--HHHccccch-------HHHHHHHHhcCCcc
Confidence 689999999999997 667777788766 47899999999 9999 99 99999999999885
Q ss_pred hCCChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHH
Q 044093 97 QSSSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTAL 176 (427)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 176 (427)
...... +. ......|..|.||||+|+..|+.+++++|++.|++++.. +..+..+
T Consensus 73 ~~~~~~------~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~----------------~~~~~~~- 126 (256)
T 2etb_A 73 GNPKPL------VN---AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLR----------------ACGRFFQ- 126 (256)
T ss_dssp TCSSCG------GG---CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------------CCSGGGS-
T ss_pred cchhhh------cc---cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----------------ccccccc-
Confidence 433210 00 112234578999999999999999999999999998873 3321100
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHH---cCCCCCCCCCCCCcHHHHHHh--cCC
Q 044093 177 HEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIS---TCKSPADHGPMGRTASHAAAF--CED 251 (427)
Q Consensus 177 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~l~~a~~--~~~ 251 (427)
.. ....+..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+. .++
T Consensus 127 -------------------~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~ 186 (256)
T 2etb_A 127 -------------------KH-QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186 (256)
T ss_dssp -------------------CC-SSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSC
T ss_pred -------------------cc-ccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCC
Confidence 00 00112234444444444444444444444 444444444444555554444 444
Q ss_pred HH-------HHHHHHhcCCCCC------CCCCCCCChHHHHHHHcCCHHHHHHHHhcCchh
Q 044093 252 TE-------MTKVLLSSKGTLT------SKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299 (427)
Q Consensus 252 ~~-------~~~~Ll~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~ 299 (427)
.+ ++++|++.+.... +..+..|.||||+|+..|+.+++++|+++|...
T Consensus 187 ~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 44 5555555443311 455666667777777777777777777666554
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.98 E-value=7.5e-31 Score=210.90 Aligned_cols=157 Identities=33% Similarity=0.376 Sum_probs=140.7
Q ss_pred cHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 044093 125 TLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANN 204 (427)
Q Consensus 125 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~ 204 (427)
+.|+.||+.|+.++|+.|++.|++++. +|..|.||||+|+..++.+++++|++.|.++. ..+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~----------------~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~ 68 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNA----------------SDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDS 68 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhcc
Confidence 468999999999999999999999887 88899999999999999999999999999876 6788
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcC
Q 044093 205 AGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLG 284 (427)
Q Consensus 205 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~ 284 (427)
.|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.+.+ ++..+..|.|||++|++.|
T Consensus 69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g 147 (169)
T 4gpm_A 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHG 147 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcC
Confidence 899999999999999999999999999999999999999999999999999999988776 6778889999999999999
Q ss_pred CHHHHHHHHhcCchh
Q 044093 285 KHYVVKELLKADKSA 299 (427)
Q Consensus 285 ~~~~~~~Ll~~~~~~ 299 (427)
+.+++++|+++|+++
T Consensus 148 ~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 148 NEEVVKLLEKQGGWL 162 (169)
T ss_dssp CHHHHHHHHTC----
T ss_pred CHHHHHHHHHCCCCc
Confidence 999999999999876
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=2.6e-31 Score=231.32 Aligned_cols=223 Identities=17% Similarity=0.164 Sum_probs=139.2
Q ss_pred HHHHHHHHHHhcCchHHHHHHHh----hcccc--c----CCCCCceEEEEeee---cCCCCCCCCchhhhHHHHHHHHHh
Q 044093 29 ELMDSLYKAAVEGHTDQFRAHAQ----MLDQI--L----TPNENTILHVHITA---RPDQTMRPNNELKSSLWMMMSTLK 95 (427)
Q Consensus 29 ~~~~~l~~A~~~g~~~~~~~ll~----~~~~~--~----~~~~~~~L~~~~A~---~~~~~~~~~~~~~~~~~L~~~g~~ 95 (427)
.+.++||.||+.|+.+.++.|++ .+.++ . +..|.||||+ |+ ..|+ .+++++|++.|++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~--A~~~~~~g~-------~~~v~~Ll~~g~~ 74 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPK--ALLNLSAGR-------NDTIPILLDIAEK 74 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHH--HHTSCBTTB-------CTHHHHHHHHHHH
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHH--HHHHhhcCC-------HHHHHHHHHhccc
Confidence 46889999999999996555554 78666 2 3669999999 88 7899 9999999999987
Q ss_pred hhCCChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcH
Q 044093 96 KQSSSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTA 175 (427)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 175 (427)
.... ..++ ...+...|..|.||||+|+..|+.++|++|++.|++++..+....... ...+..+..|.||
T Consensus 75 ~~~~------~~~~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~--~~~~~~~~~g~tp 143 (260)
T 3jxi_A 75 TGNM------REFI---NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP--KDEGGYFYFGELP 143 (260)
T ss_dssp TTCH------HHHH---TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSS--SCCCCSCCSCSSH
T ss_pred ccch------Hhhh---cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCc--ccccccccCCCCH
Confidence 4321 1111 122445666899999999999999999999999999987321000000 0000011345566
Q ss_pred HHHHHHcCCHHHHHHHHH---cCCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCCCCCCCCCcHH
Q 044093 176 LHEAVRYNQVDVVKMLTK---EDPSLPYDANNAGETPLYLAAERGY---------INVVEDIISTCKSPADHGPMGRTAS 243 (427)
Q Consensus 176 L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~t~L~~a~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~~~l 243 (427)
||+|+..|+.+++++|++ .|.++. ..+..|.||||+|+..++ .+++++|+++|++++..
T Consensus 144 L~~A~~~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~-------- 214 (260)
T 3jxi_A 144 LSLAACTNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD-------- 214 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT--------
T ss_pred HHHHHHcCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc--------
Confidence 666666666666666665 555543 345555555555555444 45555555555444110
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchh
Q 044093 244 HAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299 (427)
Q Consensus 244 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~ 299 (427)
....+..+..|.||||+|++.|+.+++++|+++|...
T Consensus 215 -------------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 215 -------------------TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp -------------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------------cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 0001344555666666666666666666666665554
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.2e-31 Score=233.43 Aligned_cols=210 Identities=19% Similarity=0.205 Sum_probs=158.1
Q ss_pred CCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCCCCC---CCCCCcHHHHHH---HcCCHHHHHHHHHcCCCCCCCCCC
Q 044093 169 NEAKDTALHEAVRYNQVDVV----KMLTKEDPSLPYDA---NNAGETPLYLAA---ERGYINVVEDIISTCKSPADHGPM 238 (427)
Q Consensus 169 ~~~g~t~L~~a~~~~~~~~~----~~Ll~~~~~~~~~~---~~~~~t~L~~a~---~~~~~~~~~~Ll~~~~~~~~~~~~ 238 (427)
+..+.++||.|++.|+.+.+ +++++.+.++.... +..|.||||+|+ ..|+.+++++|++.|+++...
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~--- 78 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM--- 78 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH---
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch---
Confidence 45567777777777777743 33334666654221 255777777777 557777777777766443210
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhcc--------------
Q 044093 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKAN-------------- 304 (427)
Q Consensus 239 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-------------- 304 (427)
..++. ......+..|.||||+|+..|+.+++++|++.|+++ +..+
T Consensus 79 -----------------~~~~~---~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~ 137 (260)
T 3jxi_A 79 -----------------REFIN---SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYF 137 (260)
T ss_dssp -----------------HHHHT---CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSC
T ss_pred -----------------Hhhhc---ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccc
Confidence 00111 113344557888888888888888888888888887 5555
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHh--CCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHhcCCCCCCcc---
Q 044093 305 NKGKIPLHLAALMGRLNTMQELIRS--CPSSCELVDDRGWNVFHFALHSGS---------RRTVELLLKSPSLGNLV--- 370 (427)
Q Consensus 305 ~~g~t~L~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~g~t~l~~A~~~~~---------~~~~~~Ll~~~~~g~~~--- 370 (427)
..|.||||+|+..|+.+++++|++. .+.+++.+|..|+||||+|+..++ .+++++|+++ |+++
T Consensus 138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~---ga~~~~~ 214 (260)
T 3jxi_A 138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK---CAKLFPD 214 (260)
T ss_dssp CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH---HHHHCTT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh---Ccccccc
Confidence 5799999999999999999999993 244468899999999999998887 7999999998 9999
Q ss_pred ----ccccCCCCchhHHHHhcCchhH-hhhcccccchhcc
Q 044093 371 ----NEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAF 405 (427)
Q Consensus 371 ----n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~ 405 (427)
+.+|..|.||||+|+..|+.++ ++|+++|+++...
T Consensus 215 ~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~ 254 (260)
T 3jxi_A 215 TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAA 254 (260)
T ss_dssp CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC-
T ss_pred cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcccc
Confidence 7799999999999999999999 9999999986654
No 55
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=4.3e-30 Score=208.79 Aligned_cols=169 Identities=21% Similarity=0.213 Sum_probs=145.2
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcC
Q 044093 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMG 318 (427)
Q Consensus 239 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 318 (427)
+.+|||.|+..|+.+++++|++.+....+..+..|.||||+|+..++.+++++|++.|.++ +..+..|.||||+|+..+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHCC
Confidence 3578888888888888888888877767778888999999999999999999999998887 777888999999999999
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcc
Q 044093 319 RLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCH 397 (427)
Q Consensus 319 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~ 397 (427)
+.+++++|++.+.+ ++.++..|+||||+|+..++.+++++|+++ |++++.+|..|.||||+|+..++..+ ++|++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp CHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 99999999988665 677889999999999999999999999998 99999999999999999999999999 99999
Q ss_pred cccchhcccccCCCh
Q 044093 398 PKVDRLAFNHHNCSA 412 (427)
Q Consensus 398 ~gad~~~~~~~g~t~ 412 (427)
+|+++..++..|.||
T Consensus 157 ~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 157 HILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHSCC-------
T ss_pred HHHHHhcccCCCCCC
Confidence 999999999998887
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=5.2e-34 Score=258.15 Aligned_cols=290 Identities=14% Similarity=0.045 Sum_probs=195.3
Q ss_pred hHHHHHHHhhcccccCCCCCceEEEEeeec-CCCCCCCCchhhhHHHHHHHHHhhhCCChHHHHHHHHhhCccchhccCC
Q 044093 43 TDQFRAHAQMLDQILTPNENTILHVHITAR-PDQTMRPNNELKSSLWMMMSTLKKQSSSSEHFVRGILEMCPGLLLKANT 121 (427)
Q Consensus 43 ~~~~~~ll~~~~~~~~~~~~~~L~~~~A~~-~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (427)
.+.+..++.+..++....+.+++++ |.. .++ .+++++|++.| .
T Consensus 47 ~~~~~~~~~~~~~~~~~~~ll~~~~--a~~~~~~-------~~~~~~l~~~g---------------------------~ 90 (376)
T 2aja_A 47 KEAIHIFLPGTKNMEQVRQLLCLYY--AHYNRNA-------KQLWSDAHKKG---------------------------I 90 (376)
T ss_dssp HHHHHHCCCCSSHHHHHHHHHHHHH--HHTTTTC-------TTHHHHHHHHT---------------------------C
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH--HHhcCCC-------HHHHHHHHHcC---------------------------C
Confidence 3444444444333322223445555 555 567 78888877433 3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLP-- 199 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~-- 199 (427)
++.||||+|+..|+.++|++|++.|+..... ...+..|.||||+|+..|+.+++++|+++|++..
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~-------------~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~ 157 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIV-------------KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 157 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-------------C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHH-------------HHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc
Confidence 3459999999999999999999998733210 0144567789999999999999999999997421
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC--CCCCCCcHHHHHH-hcCCHHHHHHHHhcCCCCCCCCCCCCChH
Q 044093 200 YDANNAGETPLYLAAERGYINVVEDIISTCKSPAD--HGPMGRTASHAAA-FCEDTEMTKVLLSSKGTLTSKPDQHGWLP 276 (427)
Q Consensus 200 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~--~~~~~~~~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~ 276 (427)
...... .||||+|+..|+.+++++|+++|++++. .+..|.||||+|+ ..|+.+++++|++.+. .+.||
T Consensus 158 ~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~ta 228 (376)
T 2aja_A 158 MIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV--------MLAYA 228 (376)
T ss_dssp HHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH--------HHHHH
T ss_pred ccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC--------ccchH
Confidence 011122 8999999999999999999999998776 7778899999999 9999999999998552 27899
Q ss_pred HHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHH------------HHHHHHhCCCCccccCCCCCcH
Q 044093 277 LHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNT------------MQELIRSCPSSCELVDDRGWNV 344 (427)
Q Consensus 277 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~------------~~~Ll~~~~~~~~~~~~~g~t~ 344 (427)
|+.|+..|+.+++++|++.|++. +..+ ++++.|+..|+.++ ++.|+..+.
T Consensus 229 L~~Aa~~g~~evv~lL~~~ga~~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~------------- 290 (376)
T 2aja_A 229 EIHEFEYGEKYVNPFIARHVNRL-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND------------- 290 (376)
T ss_dssp HHCTTTTTTTTHHHHHHHHHHHH-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHCCCHHHHHHHHhcCccc-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch-------------
Confidence 99999999999999999998876 3333 35667777776653 334444421
Q ss_pred HHHHHHcCCHHHHHHHhcCCC------CCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcccccCCChhhHHh
Q 044093 345 FHFALHSGSRRTVELLLKSPS------LGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDIIC 417 (427)
Q Consensus 345 l~~A~~~~~~~~~~~Ll~~~~------~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a~ 417 (427)
.+..+.+++|++.+. .|++++ .+.||||+|+..|+.++ ++|++.| .+++..++|++++|-
T Consensus 291 ------~~~~~~~~~Ll~~~~vk~l~~~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~ 357 (376)
T 2aja_A 291 ------EVLLDDIRFLLSIPGIKALAPTATIPG----DANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINE 357 (376)
T ss_dssp ------GGGHHHHHHHHTSTTTGGGSSCCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC--------
T ss_pred ------hhHHHHHHHHHhChhhhhhhccCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhcccccc
Confidence 112455666665321 144443 45678888888888888 8888765 567778888888876
Q ss_pred hccc
Q 044093 418 SDKL 421 (427)
Q Consensus 418 ~~~~ 421 (427)
+.+-
T Consensus 358 ~~~~ 361 (376)
T 2aja_A 358 TGGR 361 (376)
T ss_dssp ----
T ss_pred cccc
Confidence 6543
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3e-29 Score=207.66 Aligned_cols=166 Identities=21% Similarity=0.222 Sum_probs=149.0
Q ss_pred ccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 044093 113 PGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLT 192 (427)
Q Consensus 113 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll 192 (427)
+.+++..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|+
T Consensus 25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll 88 (192)
T 2rfm_A 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED----------------KDIEGSTALIWAVKNNRLGIAEKLL 88 (192)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccc----------------ccccCccHHHHHHHcCCHHHHHHHH
Confidence 445678999999999999999999999999999998876 7888999999999999999999999
Q ss_pred HcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCC
Q 044093 193 KEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQH 272 (427)
Q Consensus 193 ~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~ 272 (427)
+.+.++. ..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..
T Consensus 89 ~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~ 166 (192)
T 2rfm_A 89 SKGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLT 166 (192)
T ss_dssp HHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTT
T ss_pred HCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCC
Confidence 9998875 5777899999999999999999999999999999999999999999999999999999988765 6777888
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcC
Q 044093 273 GWLPLHLAAYLGKHYVVKELLKAD 296 (427)
Q Consensus 273 ~~t~l~~a~~~~~~~~~~~Ll~~~ 296 (427)
|.||+++|+..++.+++++|++.+
T Consensus 167 g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 167 GLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcHHHHHHHHhcc
Confidence 889999999999999998888764
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=2e-29 Score=208.66 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=157.9
Q ss_pred chHHHHHHHhhcccccCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHHHHHHHHhhCccchhccCC
Q 044093 42 HTDQFRAHAQMLDQILTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEHFVRGILEMCPGLLLKANT 121 (427)
Q Consensus 42 ~~~~~~~ll~~~~~~~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (427)
+.+.++..++...+..|..|.||||+ |+..|+ .+++++|++.|++ ++..+.
T Consensus 16 ~~~~i~~~~~~~~n~~d~~g~t~L~~--A~~~g~-------~~~v~~Ll~~~~~--------------------~~~~~~ 66 (192)
T 2rfm_A 16 DEKSINQNLDFLRNYRDSYNRTPLMV--ACMLGM-------ENAIDKLVENFDK--------------------LEDKDI 66 (192)
T ss_dssp SHHHHHHTHHHHHTCCCTTCCCHHHH--HHHHTC-------GGGHHHHHHHHCC--------------------TTCCCT
T ss_pred hhhhhhhhhHHHHhCcCCCCCCHHHH--HHHcCC-------HHHHHHHHHhccc--------------------cccccc
Confidence 45556666666667789999999999 999999 9999999976654 556788
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
.|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|++.+.++. .
T Consensus 67 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~ 129 (192)
T 2rfm_A 67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNT----------------KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-D 129 (192)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHTCCTTC----------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-C
T ss_pred cCccHHHHHHHcCCHHHHHHHHHCCCCCCC----------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence 899999999999999999999999999876 88889999999999999999999999999876 6
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSK 262 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 262 (427)
.+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+..++.+++++|++.+
T Consensus 130 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 130 RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 7888999999999999999999999999999999999999999999999999999999764
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=3.5e-30 Score=225.48 Aligned_cols=185 Identities=21% Similarity=0.226 Sum_probs=112.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHH-----
Q 044093 209 PLYLAAERGYINVVEDIISTCKS--PADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAA----- 281 (427)
Q Consensus 209 ~L~~a~~~~~~~~~~~Ll~~~~~--~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~----- 281 (427)
++|.|+..+..+.++.++..+.+ ++..|..|.||||+|+..++.+++++|++.+...++..+..|.||||.|+
T Consensus 79 ~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~ 158 (276)
T 4hbd_A 79 DAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLK 158 (276)
T ss_dssp TCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhh
Confidence 34445555555555555444333 44455555555555555555555555555555345555555555665555
Q ss_pred HcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHh
Q 044093 282 YLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLL 361 (427)
Q Consensus 282 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 361 (427)
..++.++++.|++.|... ...+..|.||||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+
T Consensus 159 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll 236 (276)
T 4hbd_A 159 TQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLL 236 (276)
T ss_dssp SHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 445566666666666554 45555666777777777777777777766544 4566677777777777777777777777
Q ss_pred c-CCCCCCccccccCCCCchhHHHHhcCchhH-hhhccc
Q 044093 362 K-SPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHP 398 (427)
Q Consensus 362 ~-~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~ 398 (427)
+ . |++++.+|..|.||||+|+..|+.++ ++|+++
T Consensus 237 ~~~---gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 237 AVP---SCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp TST---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred hcC---CCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 6 5 77777777777777777777777666 666554
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=221.22 Aligned_cols=192 Identities=21% Similarity=0.210 Sum_probs=156.2
Q ss_pred CCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHH
Q 044093 61 ENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVK 140 (427)
Q Consensus 61 ~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 140 (427)
..+++|. |+..|+ .+.++.++..+.+ ..++..|..|.||||+|+..|+.++++
T Consensus 76 ~~~~l~~--a~~~~~-------~~~~~~l~~~~~~------------------~~~n~~d~~g~T~Lh~A~~~g~~~~v~ 128 (276)
T 4hbd_A 76 CRSDAHP--ELVRRH-------LVTFRAMSARLLD------------------YVVNIADSNGNTALHYSVSHANFPVVQ 128 (276)
T ss_dssp HSTTCCH--HHHHHH-------HHHHHHHCHHHHH------------------HHHTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred hccCCCH--HHHHHH-------HHHHHHHHHHHHh------------------hcCcCCCCCCCCHHHHHHHCCCHHHHH
Confidence 4577888 888888 8888888854443 235678888999999999999999999
Q ss_pred HHHHhcC-CCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHH
Q 044093 141 DLIAECK-KPHQNDPEKGVEAARLMLGTTNEAKDTALHEAV-----RYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAA 214 (427)
Q Consensus 141 ~Ll~~g~-~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~-----~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~ 214 (427)
+|++.|+ +++. .+..|.||||+|+ ..++.+++++|++.+.... ..+..|.||||+|+
T Consensus 129 ~Ll~~g~~~~~~----------------~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~ 191 (276)
T 4hbd_A 129 QLLDSGVCKVDK----------------QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAV 191 (276)
T ss_dssp HHHHTSCCCTTC----------------CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHH
T ss_pred HHHHCCCCcCCC----------------CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHH
Confidence 9999987 7665 7888899999998 5577888899988886654 56677889999999
Q ss_pred HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHh
Q 044093 215 ERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLK 294 (427)
Q Consensus 215 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~ 294 (427)
..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++..+..++..+..|.|||++|+..|+.+++++|++
T Consensus 192 ~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 271 (276)
T 4hbd_A 192 SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271 (276)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999998888888888888888888888888888888884444467778888888888888888888888887
Q ss_pred cC
Q 044093 295 AD 296 (427)
Q Consensus 295 ~~ 296 (427)
+.
T Consensus 272 ~~ 273 (276)
T 4hbd_A 272 RM 273 (276)
T ss_dssp HC
T ss_pred cc
Confidence 54
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=1.3e-28 Score=198.05 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=137.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
...||||+|+..|+.+++++|++.|++++. .+..|.||||+|+. |+.+++++|++.+.++. .
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~----------------~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~ 65 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVNA----------------QNGFGRTALQVMKL-GNPEIARRLLLRGANPD-L 65 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTTC----------------CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-C
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCccc----------------cCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-C
Confidence 456899999999999999999998888776 77889999999988 99999999999988865 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHH
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAA 281 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~ 281 (427)
.+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+....+..+..|.||||+|+
T Consensus 66 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~ 145 (162)
T 1ihb_A 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145 (162)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence 67788999999999999999999999999998888889999999999999999999998888766777888888888888
Q ss_pred HcCCHHHHHHHHhcCch
Q 044093 282 YLGKHYVVKELLKADKS 298 (427)
Q Consensus 282 ~~~~~~~~~~Ll~~~~~ 298 (427)
..++.+++++|+++|++
T Consensus 146 ~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 146 LYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HTTCHHHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHhCCC
Confidence 88888888888888764
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=8.8e-29 Score=202.35 Aligned_cols=168 Identities=21% Similarity=0.238 Sum_probs=151.3
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHH
Q 044093 237 PMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAAL 316 (427)
Q Consensus 237 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 316 (427)
..+.++|+.|+..|+.+++++|++.++..++..+..|.||||+|+..++.+++++|++.|.++ +..+..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 356788999999999999999998877778888899999999999999999999999999887 7788899999999999
Q ss_pred cCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhh
Q 044093 317 MGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFV 395 (427)
Q Consensus 317 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L 395 (427)
.++.+++++|++.+.+ ++.+|..|.||||+|+..++.+++++|+++ |++++.+|..|.||||+|+..++..+ ++|
T Consensus 82 ~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L 157 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVAN---GALVSICNKYGEMPVDKAKAPLRELLRERA 157 (179)
T ss_dssp TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSSBCCTTSCCGGGGSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCcchhccCCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999765 678999999999999999999999999999 99999999999999999999999998 999
Q ss_pred cccccchhcccccC
Q 044093 396 CHPKVDRLAFNHHN 409 (427)
Q Consensus 396 ~~~gad~~~~~~~g 409 (427)
+++|++++..+..+
T Consensus 158 ~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 158 EKMGQNLNRIPYKD 171 (179)
T ss_dssp HHTTCCCSCBCCCC
T ss_pred HHhhcCcccCCccc
Confidence 99999999877655
No 63
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=5.3e-28 Score=195.40 Aligned_cols=160 Identities=21% Similarity=0.193 Sum_probs=144.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
.|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+.++. .
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~ 64 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINH----------------TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-L 64 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCC----------------CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence 578999999999999999999999988776 88889999999999999999999999998875 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHH
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAA 281 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~ 281 (427)
.+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||+++|+
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~ 143 (167)
T 3v31_A 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAV 143 (167)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999988766 6777888999999999
Q ss_pred HcCCHHHHHHHHhcCchh
Q 044093 282 YLGKHYVVKELLKADKSA 299 (427)
Q Consensus 282 ~~~~~~~~~~Ll~~~~~~ 299 (427)
..|+.+++++|++++...
T Consensus 144 ~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 144 ALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHH
Confidence 999999999999887665
No 64
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=5.9e-29 Score=201.32 Aligned_cols=158 Identities=21% Similarity=0.271 Sum_probs=111.3
Q ss_pred hhHHHHHHHHHHHhcCchHHHHHHHhhcccc--cCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHH
Q 044093 26 KNFELMDSLYKAAVEGHTDQFRAHAQMLDQI--LTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEH 103 (427)
Q Consensus 26 ~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~ 103 (427)
....+.++|+.||..|+.+++++|++.|+++ .+..|.||||+ |+..|+ .+++++|++.|++
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~-------~~~v~~Ll~~g~~-------- 72 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHL--AAFNGH-------LEIVEVLLKNGAD-------- 72 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTC-------HHHHHHHHHTTCC--------
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHcCC-------HHHHHHHHHcCCC--------
Confidence 3444677999999999999999999988766 56667777777 777777 7777777744433
Q ss_pred HHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcC
Q 044093 104 FVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYN 183 (427)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~ 183 (427)
++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..+
T Consensus 73 ------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~ 124 (169)
T 2y1l_E 73 ------------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA----------------NDMEGHTPLHLAAMFG 124 (169)
T ss_dssp ------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTT
T ss_pred ------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------------CCCCCCCHHHHHHHcC
Confidence 445566677777777777777777777777776665 6666777777777777
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 044093 184 QVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTC 229 (427)
Q Consensus 184 ~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~ 229 (427)
+.+++++|+++|.++. ..+..|.|||++|+..++.+++++|++.|
T Consensus 125 ~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 125 HLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 7777777777776654 45566777777777777777777776654
No 65
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=6.2e-33 Score=251.08 Aligned_cols=285 Identities=13% Similarity=0.086 Sum_probs=198.4
Q ss_pred hhHHHHHHHHHHHh-cCchHHHHHHHhhcccccCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHHH
Q 044093 26 KNFELMDSLYKAAV-EGHTDQFRAHAQMLDQILTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEHF 104 (427)
Q Consensus 26 ~~~~~~~~l~~A~~-~g~~~~~~~ll~~~~~~~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~ 104 (427)
....+.+.++.|.. .++.++++++++.|.+. .||||+ |+..|+ .+++++|++.|+..
T Consensus 61 ~~~~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-----~T~Lh~--Aa~~G~-------~e~v~~Ll~~ga~~-------- 118 (376)
T 2aja_A 61 EQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKS-----EVICFV--AAITGC-------SSALDTLCLLLTSD-------- 118 (376)
T ss_dssp HHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCH-----HHHHHH--HHHHCC-------HHHHHHHTTC--CC--------
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCc-----CCHHHH--HHHcCC-------HHHHHHHHHcCCcH--------
Confidence 33456778888877 58899999999988654 599999 999999 99999999655520
Q ss_pred HHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCC
Q 044093 105 VRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQ 184 (427)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~ 184 (427)
......+..|.||||+|+..|+.++|++|++.|+++.. .+..+.. .||||+|+..|+
T Consensus 119 ---------~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~-------------~~i~~~~-~TpLh~Aa~~G~ 175 (376)
T 2aja_A 119 ---------EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-------------AMIQAEN-YHAFRLAAENGH 175 (376)
T ss_dssp ---------SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-------------HHHSHHH-HHHHHHHHHTTC
T ss_pred ---------HHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-------------cccCCCC-CCHHHHHHHCCC
Confidence 11123444677899999999999999999999975321 0001222 799999999999
Q ss_pred HHHHHHHHHcCCCCCC-CCCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 044093 185 VDVVKMLTKEDPSLPY-DANNAGETPLYLAA-ERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSK 262 (427)
Q Consensus 185 ~~~~~~Ll~~~~~~~~-~~~~~~~t~L~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 262 (427)
.+++++|+++|+++.. ..+..|.||||+|+ ..|+.+++++|++.|+ .+.||++.|+..|+.+++++|++.+
T Consensus 176 ~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~g 248 (376)
T 2aja_A 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHV 248 (376)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcC
Confidence 9999999999988542 15667899999999 9999999999999774 3789999999999999999999876
Q ss_pred CCCCCCCCCCCChHHHHHHHcCCHHH------------HHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 044093 263 GTLTSKPDQHGWLPLHLAAYLGKHYV------------VKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSC 330 (427)
Q Consensus 263 ~~~~~~~~~~~~t~l~~a~~~~~~~~------------~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 330 (427)
... +.. .++++.|+..|+.++ ++.++..+. .+..+.+++|++..
T Consensus 249 a~~-~~~----~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~-------------------~~~~~~~~~Ll~~~ 304 (376)
T 2aja_A 249 NRL-KEM----HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND-------------------EVLLDDIRFLLSIP 304 (376)
T ss_dssp HHH-HHH----HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC-------------------GGGHHHHHHHHTST
T ss_pred ccc-ccc----cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch-------------------hhHHHHHHHHHhCh
Confidence 542 111 134566666666553 333433321 11255677777643
Q ss_pred CCC----ccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH
Q 044093 331 PSS----CELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ 392 (427)
Q Consensus 331 ~~~----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~ 392 (427)
... .......+.||||+|+..|+.+++++|++. ..+++..|+||+.+|-..|..++
T Consensus 305 ~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~------~~v~~~~~~~~~~~~~~~~~~~~ 364 (376)
T 2aja_A 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSI------PSVLALTKANNYYINETGGRLDL 364 (376)
T ss_dssp TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS------HHHHHSCC---------------
T ss_pred hhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC------hHHHHHHHHhccccccccccccH
Confidence 211 011223567899999999999999999987 47788899999999999888776
No 66
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=3.1e-28 Score=197.75 Aligned_cols=169 Identities=19% Similarity=0.194 Sum_probs=130.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCC-CCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 123 GETLLHIAARHGHADIVKDLIAECKK-PHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 123 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
+.||||+|+..|+.+++++|++.+.. ++ ..+..|.||||+|+..|+.+++++|++.+.++. .
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~----------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~ 64 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVN----------------KPDERGFTPLIWASAFGEIETVRFLLEWGADPH-I 64 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGG----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-C
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCccccc----------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-h
Confidence 35788888888888888888887765 33 367788888888888888888888888888765 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHH
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAA 281 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~ 281 (427)
.+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.|||++|+
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~ 143 (172)
T 3v30_A 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAV 143 (172)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred hcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHH
Confidence 667788888888888888888888888888888888888888888888888888888887665 6667778888888888
Q ss_pred HcCCHHHHHHHHhcCchhhhhccCCCCcH
Q 044093 282 YLGKHYVVKELLKADKSAAYKANNKGKIP 310 (427)
Q Consensus 282 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 310 (427)
..++.+++++|++++.+. ...+..|.||
T Consensus 144 ~~~~~~~~~~L~~~~~~~-~~~~~~~~~p 171 (172)
T 3v30_A 144 ALGYRKVQQVIENHILKL-FQSNLVPADP 171 (172)
T ss_dssp HHTCHHHHHHHHHHHHHH-SCC-------
T ss_pred HhCcHHHHHHHHHHHHHH-hcccCCCCCC
Confidence 888888888888887776 4455555554
No 67
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=4.9e-30 Score=217.67 Aligned_cols=190 Identities=15% Similarity=0.086 Sum_probs=110.8
Q ss_pred HHHHHcCCCCCCCC---CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchh
Q 044093 223 EDIISTCKSPADHG---PMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSA 299 (427)
Q Consensus 223 ~~Ll~~~~~~~~~~---~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~ 299 (427)
+.|+++|++++..+ ..+.+|||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~ 80 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLITAGANV 80 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 34445554444332 2233445555555555555555555443 4445556666666666666666666666666655
Q ss_pred hhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCcccc-CCCCCcHHHHH--HHcCCHHHHHHHhcCCCCCCccccccCC
Q 044093 300 AYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELV-DDRGWNVFHFA--LHSGSRRTVELLLKSPSLGNLVNEKNDD 376 (427)
Q Consensus 300 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~g~t~l~~A--~~~~~~~~~~~Ll~~~~~g~~~n~~d~~ 376 (427)
+..+..|.||||+|+..|+.+++++|++.+.+. +.. +..|+||||+| +..++.+++++|++. |++++.+|..
T Consensus 81 -n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~~ 155 (229)
T 2vge_A 81 -NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNSG 155 (229)
T ss_dssp -TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGGG
T ss_pred -CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccCC
Confidence 555666666666666666666666666665543 333 35677777777 667777777777776 7777777777
Q ss_pred CCchhHHHHhcCchhHhhhcccccc--hhcccccCCChhhHHhhcc
Q 044093 377 GNTPLLEHAVSGSFIQSFVCHPKVD--RLAFNHHNCSAEDIICSDK 420 (427)
Q Consensus 377 g~tpL~~a~~~~~~~~~~L~~~gad--~~~~~~~g~t~l~~a~~~~ 420 (427)
|.||++.++..+.. ++|++.|++ ++.+|..|+||||+|+..+
T Consensus 156 ~~~~l~~~~~~~~~--~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 156 AVYALWDYSAEFGD--ELSFREGESVTVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp EEEESSCBCCSSTT--BCCBCTTCEEEEEESSCTTCSSEEEEEETT
T ss_pred chHHHHHHhhcccc--ccCccccccccccccCCCcccHHHHHHHcC
Confidence 77777654443322 466666766 5566667777777776543
No 68
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=8e-28 Score=194.63 Aligned_cols=160 Identities=26% Similarity=0.303 Sum_probs=134.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 044093 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSL 198 (427)
Q Consensus 119 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~ 198 (427)
....+.++|++|+..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++.+.++
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 73 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNA----------------EDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCC----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 345567889999999999999999999988876 7788899999999999999999999998886
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHH
Q 044093 199 PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLH 278 (427)
Q Consensus 199 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~ 278 (427)
. ..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||++
T Consensus 74 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~ 151 (169)
T 2y1l_E 74 N-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFD 151 (169)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred C-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHH
Confidence 5 5677889999999999999999999999988888888888888888888888888888887766 6667788888888
Q ss_pred HHHHcCCHHHHHHHHhcC
Q 044093 279 LAAYLGKHYVVKELLKAD 296 (427)
Q Consensus 279 ~a~~~~~~~~~~~Ll~~~ 296 (427)
+|+..++.+++++|++.|
T Consensus 152 ~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 152 ISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHTTCHHHHHHHHTC-
T ss_pred HHHHhCCHHHHHHHHHcC
Confidence 888888888888888764
No 69
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.9e-28 Score=195.19 Aligned_cols=154 Identities=24% Similarity=0.335 Sum_probs=96.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCH
Q 044093 207 ETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKH 286 (427)
Q Consensus 207 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~ 286 (427)
.|||+.|+..|+.+++++|+++|.+++..+..|.||||+|+. ++.+++++|++.+.. ++..+..|.||||.|+..++.
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~ 83 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFL 83 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCH
Confidence 455666666666666666665555555555555556555555 555555555555443 444555566666666666666
Q ss_pred HHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcC
Q 044093 287 YVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKS 363 (427)
Q Consensus 287 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 363 (427)
+++++|++.|.++ +..+..|.||||+|+..++.+++++|++.++..++..+..|.||||+|+..++.+++++|+++
T Consensus 84 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 84 DTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp HHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666555 555666666666666666666666666666655566666667777777777777777777766
No 70
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=4.3e-28 Score=195.96 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=113.4
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcC
Q 044093 239 GRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMG 318 (427)
Q Consensus 239 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~ 318 (427)
|.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..|+.+++++|++.|.++ +..+..|.||||+|+..+
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcC
Confidence 45666666666666666666665543 4555666666666666666666666666666665 556667777777777777
Q ss_pred CHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcc
Q 044093 319 RLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCH 397 (427)
Q Consensus 319 ~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~ 397 (427)
+.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|+++ |++++.+|..|.||||+|+..++..+ ++|++
T Consensus 81 ~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 81 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLES---GADPTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp CHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 77777777777554 466777788888888888888888888877 88888888888888888888888777 88887
Q ss_pred cccchh
Q 044093 398 PKVDRL 403 (427)
Q Consensus 398 ~gad~~ 403 (427)
+++++.
T Consensus 157 ~~~~~~ 162 (167)
T 3v31_A 157 HLLKLL 162 (167)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 777643
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=3.1e-28 Score=196.38 Aligned_cols=159 Identities=25% Similarity=0.256 Sum_probs=138.9
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHH
Q 044093 236 GPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAA 315 (427)
Q Consensus 236 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 315 (427)
+..+.++|+.|+..++.+++++|++.........+..|.||||+|+..++.+++++|++.|.++ +..+..|.||||+|+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNAC 83 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHH
Confidence 4567788888888888888888888776667777888889999999999999999999999887 778889999999999
Q ss_pred HcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hh
Q 044093 316 LMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SF 394 (427)
Q Consensus 316 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~ 394 (427)
..++.+++++|++.+.+ ++.++..|+||||+|+..++.+++++|+++ |++++.+|..|+||||+|.. ++.++ ++
T Consensus 84 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~a~~-~~~~i~~~ 158 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQH---GADPTKKNRDGNTPLDLVKD-GDTDIQDL 158 (165)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCTGGGSCT-TCHHHHHH
T ss_pred HcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCChhHhHhc-CChHHHHH
Confidence 99999999999998665 577899999999999999999999999998 99999999999999999877 77777 99
Q ss_pred hccccc
Q 044093 395 VCHPKV 400 (427)
Q Consensus 395 L~~~ga 400 (427)
|+++||
T Consensus 159 L~~~gA 164 (165)
T 3twr_A 159 LRGDAA 164 (165)
T ss_dssp HHTC--
T ss_pred Hhhccc
Confidence 999886
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=2.1e-30 Score=219.95 Aligned_cols=204 Identities=19% Similarity=0.166 Sum_probs=164.7
Q ss_pred HHHHHHcCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC
Q 044093 188 VKMLTKEDPSLP--YDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTL 265 (427)
Q Consensus 188 ~~~Ll~~~~~~~--~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~ 265 (427)
++.|++.+.+.. ...+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++.+..
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~- 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGAN- 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-
Confidence 356777776643 23445677889999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHH--HHcCCHHHHHHHHHhCCCCccccCCCCCc
Q 044093 266 TSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLA--ALMGRLNTMQELIRSCPSSCELVDDRGWN 343 (427)
Q Consensus 266 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 343 (427)
++..+..|.||||+|+..|+.+++++|++.|+++....+..|.||||+| +..++.+++++|++.+.+ ++..+..|.|
T Consensus 80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~ 158 (229)
T 2vge_A 80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVY 158 (229)
T ss_dssp TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEE
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchH
Confidence 7778889999999999999999999999999988333346899999999 999999999999998765 5667888889
Q ss_pred HHHHHHHcCCHHHHHHHhcCCCCCCc--cccccCCCCchhHHHHhcCchhH--hhhcccc
Q 044093 344 VFHFALHSGSRRTVELLLKSPSLGNL--VNEKNDDGNTPLLEHAVSGSFIQ--SFVCHPK 399 (427)
Q Consensus 344 ~l~~A~~~~~~~~~~~Ll~~~~~g~~--~n~~d~~g~tpL~~a~~~~~~~~--~~L~~~g 399 (427)
+++.++.... .++|++. |++ ++.+|..|+||||+|+..|+..+ +.+++.-
T Consensus 159 ~l~~~~~~~~---~~~ll~~---ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~ 212 (229)
T 2vge_A 159 ALWDYSAEFG---DELSFRE---GESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLF 212 (229)
T ss_dssp ESSCBCCSST---TBCCBCT---TCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESS
T ss_pred HHHHHhhccc---cccCccc---cccccccccCCCcccHHHHHHHcCCcceeehhhhhhC
Confidence 9886554443 3678887 888 78899999999999999999887 5555443
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=6.1e-27 Score=186.13 Aligned_cols=150 Identities=22% Similarity=0.230 Sum_probs=113.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 044093 124 ETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDAN 203 (427)
Q Consensus 124 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~ 203 (427)
.|+||.|+..|+.+++++|++.|++.+ .+..|.||||+|+..|+.+++++|++.+.++. ..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 64 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-----------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART 64 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-----------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence 467888888888888888888877543 45667788888888888888888888777765 456
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHc
Q 044093 204 NAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYL 283 (427)
Q Consensus 204 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~ 283 (427)
..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||+++|+..
T Consensus 65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 6778888888888888888888888877777777777777777777777777777777655 566677777777777777
Q ss_pred CCHHHHHHH
Q 044093 284 GKHYVVKEL 292 (427)
Q Consensus 284 ~~~~~~~~L 292 (427)
|+.+++++|
T Consensus 144 ~~~~i~~~L 152 (153)
T 1awc_B 144 GNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHH
T ss_pred CCHHHHHHh
Confidence 777777765
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=4.6e-29 Score=213.77 Aligned_cols=207 Identities=13% Similarity=0.125 Sum_probs=137.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHc
Q 044093 204 NAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYL 283 (427)
Q Consensus 204 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~ 283 (427)
..|.||||.|+..+..+.++.|+++|++++.. ..+.||||.|+..|+.+++++|++.+.. ++..+..|.||||+|+..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~ 80 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCA 80 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence 35777888888777777788888777777653 5667788888888888888888877664 667778888888888888
Q ss_pred CCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCC-cHHHHH--HHcCCHHHHHHH
Q 044093 284 GKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGW-NVFHFA--LHSGSRRTVELL 360 (427)
Q Consensus 284 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A--~~~~~~~~~~~L 360 (427)
|+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.+.+ ++..+..|. ||||+| +..++.+++++|
T Consensus 81 g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~L 158 (239)
T 1ycs_B 81 GHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158 (239)
T ss_dssp TCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHH
Confidence 8888888888888877 77788888999999999999999999988766 455666665 999988 777889999999
Q ss_pred hcCCCCCCccccc---------cCCCCchhHHHHhcCchhHhhhcccccc------hhcccccCCChhhHHhh
Q 044093 361 LKSPSLGNLVNEK---------NDDGNTPLLEHAVSGSFIQSFVCHPKVD------RLAFNHHNCSAEDIICS 418 (427)
Q Consensus 361 l~~~~~g~~~n~~---------d~~g~tpL~~a~~~~~~~~~~L~~~gad------~~~~~~~g~t~l~~a~~ 418 (427)
++. |++++.. +..+.+|+++++..|.. +.+|.+.+.+ ....++.|.+|..|+..
T Consensus 159 l~~---~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~-i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~ 227 (239)
T 1ycs_B 159 YGV---QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC-MTIIHREDEDEIEWWWARLNDKEGYVPRNLLGL 227 (239)
T ss_dssp HHH---HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE-EEECCCCTTSCSSEEEEEETTEEEEEEGGGEEC
T ss_pred HHh---hhcccccccceEEEEeccCCCCCCcccccCCCE-EEEEEecCCCCCCEEEEEECCcEEEeehHHeeE
Confidence 988 8888876 56688999999888862 2566665555 24677889999988754
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.5e-26 Score=183.32 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=127.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHh-cCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 123 GETLLHIAARHGHADIVKDLIAE-CKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 123 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
+.||||+|+..|+.+++++|++. +.+++. .+..|.||||+ +..|+.+++++|++.|.++. .
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~----------------~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~ 63 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA----------------LNRFGKTALQV-MMFGSTAIALELLKQGASPN-V 63 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTC----------------CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-C
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccc----------------cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-C
Confidence 45789999999999999999988 225554 77788899998 88889999999998888865 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHH
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAA 281 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~ 281 (427)
.+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++. ..++..+..|.|||++|+
T Consensus 64 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~ 141 (156)
T 1bd8_A 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELAL 141 (156)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHH
Confidence 677888999999999999999999998888888888888888888888888888888877 346777888888888888
Q ss_pred HcCCHHHHHHHHhc
Q 044093 282 YLGKHYVVKELLKA 295 (427)
Q Consensus 282 ~~~~~~~~~~Ll~~ 295 (427)
..++.+++++|+++
T Consensus 142 ~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 142 QRGAQDLVDILQGH 155 (156)
T ss_dssp HSCCHHHHHHHHTT
T ss_pred HcCcHHHHHHHHhh
Confidence 88888888888763
No 76
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.95 E-value=1.1e-27 Score=205.31 Aligned_cols=178 Identities=13% Similarity=0.107 Sum_probs=132.1
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHH
Q 044093 237 PMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAAL 316 (427)
Q Consensus 237 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~ 316 (427)
..|.||||.|+..+..+.++.|++++.. ++. +..+.||||.|+..|+.+++++|++.|+++ +..+..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 4689999999999999999999998876 343 467899999999999999999999999977 8889999999999999
Q ss_pred cCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCC-chhHHH--HhcCchhH-
Q 044093 317 MGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGN-TPLLEH--AVSGSFIQ- 392 (427)
Q Consensus 317 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~-tpL~~a--~~~~~~~~- 392 (427)
.|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++ |++++.++..|. ||||+| +..|+..+
T Consensus 80 ~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVES---GAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 9999999999999765 688999999999999999999999999999 999999998887 999999 77888888
Q ss_pred hhhcccccchhcc---------cccCCChhhHHhhccc
Q 044093 393 SFVCHPKVDRLAF---------NHHNCSAEDIICSDKL 421 (427)
Q Consensus 393 ~~L~~~gad~~~~---------~~~g~t~l~~a~~~~~ 421 (427)
++|+++|++++.. +..+.++.+++.+.+.
T Consensus 156 ~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 156 QFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 9999999999887 5568888888876543
No 77
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2.8e-26 Score=182.29 Aligned_cols=149 Identities=23% Similarity=0.242 Sum_probs=85.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCH
Q 044093 173 DTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDT 252 (427)
Q Consensus 173 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~ 252 (427)
.+||+.|+..|+.+++++|++.+.+.. .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 356777777777777777777766543 455666777777777777777777766666666665555665555555555
Q ss_pred HHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHH
Q 044093 253 EMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQE 325 (427)
Q Consensus 253 ~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 325 (427)
+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.|||++|+..|+.+++++
T Consensus 81 ~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~ 151 (153)
T 1awc_B 81 NIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEI 151 (153)
T ss_dssp HHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHH
Confidence 555555555433 3444444555555555555555555555544444 3444444444444444444444444
No 78
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=1.7e-26 Score=188.77 Aligned_cols=166 Identities=18% Similarity=0.175 Sum_probs=104.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcC
Q 044093 206 GETPLYLAAERGYINVVEDIIST-CKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLG 284 (427)
Q Consensus 206 ~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~ 284 (427)
+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.||||+|+..+
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 83 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHG 83 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC
Confidence 33445555555555555555544 234444445555555555555555555555544433 3444555666666666666
Q ss_pred CHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCC
Q 044093 285 KHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSP 364 (427)
Q Consensus 285 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 364 (427)
+.+++++|++.|+++ +..+..|.||||+|+..++.+++++|++.+.+ ++.++..|.||||+|+..++.+++++|++.
T Consensus 84 ~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~- 160 (179)
T 3f6q_A 84 HRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAEKM- 160 (179)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHHHh-
Confidence 666666666666665 56667777777777777777777777777554 566777888888888887788888888877
Q ss_pred CCCCccccccCCC
Q 044093 365 SLGNLVNEKNDDG 377 (427)
Q Consensus 365 ~~g~~~n~~d~~g 377 (427)
|++++..+..+
T Consensus 161 --g~~~~~~~~~~ 171 (179)
T 3f6q_A 161 --GQNLNRIPYKD 171 (179)
T ss_dssp --TCCCSCBCCCC
T ss_pred --hcCcccCCccc
Confidence 88777766554
No 79
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=1.3e-26 Score=186.76 Aligned_cols=159 Identities=26% Similarity=0.282 Sum_probs=105.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 044093 168 TNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAA 247 (427)
Q Consensus 168 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~ 247 (427)
.+..+.+|||.|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 45667788888888888888888888655544456667788888888888888888888888887777777777777777
Q ss_pred hcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHH
Q 044093 248 FCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELI 327 (427)
Q Consensus 248 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 327 (427)
..++.+++++|++.+.. ++..+..|.||||+|+..++.+++++|++.|+++ +..+..|.|||++|+. ++.+++++|+
T Consensus 84 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~ 160 (165)
T 3twr_A 84 SYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLR 160 (165)
T ss_dssp HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHH
T ss_pred HcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHh
Confidence 77666666666665544 4444555555555555555555555555555554 4445555555555443 4455555555
Q ss_pred Hh
Q 044093 328 RS 329 (427)
Q Consensus 328 ~~ 329 (427)
+.
T Consensus 161 ~~ 162 (165)
T 3twr_A 161 GD 162 (165)
T ss_dssp TC
T ss_pred hc
Confidence 44
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=4.6e-26 Score=181.80 Aligned_cols=150 Identities=25% Similarity=0.332 Sum_probs=68.8
Q ss_pred cHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCH
Q 044093 208 TPLYLAAERGYINVVEDIIST-CKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKH 286 (427)
Q Consensus 208 t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~ 286 (427)
|||+.|+..|+.+++++|++. +.+++..+..|.||||+ +..++.+++++|++.+.. ++..+..|.||||.|+..|+.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~ 81 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcH
Confidence 344444444444444444443 11333344444444444 444444444444443332 333344444444444444444
Q ss_pred HHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhc
Q 044093 287 YVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLK 362 (427)
Q Consensus 287 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 362 (427)
+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++. .+++.++..|.||||+|+..++.+++++|++
T Consensus 82 ~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 82 DTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 4444444444443 34444455555555555555555555544 2234445555555555555555555555554
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.8e-26 Score=183.98 Aligned_cols=143 Identities=19% Similarity=0.145 Sum_probs=112.6
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCc-HHH
Q 044093 268 KPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWN-VFH 346 (427)
Q Consensus 268 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t-~l~ 346 (427)
..+..+.||||.|+..|+.+++++|++.|.++ +..+..|.||||+|+ .++.+++++|++.+.+ ++.++..|+| |||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVH 83 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHH
Confidence 34677889999999999999999999998887 778889999999985 8999999999998655 6788999999 999
Q ss_pred HHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcccccCCChhhHH
Q 044093 347 FALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDII 416 (427)
Q Consensus 347 ~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a 416 (427)
+|+..++.+++++|+++ |++++.+|..|.||||+|+..++..+ ++|+++|++++.+|..|.||.+-+
T Consensus 84 ~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRA---GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHH---TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHCCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 99999999999999998 99999999999999999999999999 999999999999999999988744
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.93 E-value=7.3e-26 Score=175.94 Aligned_cols=131 Identities=18% Similarity=0.128 Sum_probs=119.8
Q ss_pred CCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCC-CCc
Q 044093 265 LTSKPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDR-GWN 343 (427)
Q Consensus 265 ~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-g~t 343 (427)
.++..+..|.||||.|+..++.+++++|++.|.++ +..+..|.||||+|+. ++.+++++|++.+.+ ++.++.. |+|
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~t 80 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLTR 80 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTBC
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCCC
Confidence 46777888999999999999999999999999887 7788899999999999 999999999998766 5778888 999
Q ss_pred HHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccc
Q 044093 344 VFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVD 401 (427)
Q Consensus 344 ~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad 401 (427)
|||+|+..++.+++++|+++ |++++.+|..|.||||+|+..++..+ ++|+++|||
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRA---GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHT---CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999998 99999999999999999999999999 999999986
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=6.9e-27 Score=191.05 Aligned_cols=159 Identities=13% Similarity=0.088 Sum_probs=134.0
Q ss_pred HHHHHHHHHHhcCchHHHHHHHhhcccccC-CCCCceEEEEeeecCCCCCCCCchh----hhHHHHHHHHHhhhCCChHH
Q 044093 29 ELMDSLYKAAVEGHTDQFRAHAQMLDQILT-PNENTILHVHITARPDQTMRPNNEL----KSSLWMMMSTLKKQSSSSEH 103 (427)
Q Consensus 29 ~~~~~l~~A~~~g~~~~~~~ll~~~~~~~~-~~~~~~L~~~~A~~~~~~~~~~~~~----~~~~~L~~~g~~~~~~~~~~ 103 (427)
++.++|+.|++.|+++.++.++..+++..+ ..|+||||+ |+..|+ . +++++|++.|++
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~--A~~~~~-------~~~~~~iv~~Ll~~Gad-------- 67 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYD--VLRNNN-------DEARYKISMFLINKGAD-------- 67 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHH--HTTCSC-------HHHHHHHHHHHHHTTCC--------
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHH--HHHcCC-------cchHHHHHHHHHHCCCC--------
Confidence 355689999999999999999999988755 789999999 999997 6 489999977766
Q ss_pred HHHHHHhhCccchhccCCCCCcHHHHHHHcCC------HHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCC-cHH
Q 044093 104 FVRGILEMCPGLLLKANTKGETLLHIAARHGH------ADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKD-TAL 176 (427)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L 176 (427)
++.++..|.||||+|+..|+ .+++++|++.|++++. +|..|. |||
T Consensus 68 ------------vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~----------------~d~~g~ttpL 119 (186)
T 3t8k_A 68 ------------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA----------------LYKPYKIVVF 119 (186)
T ss_dssp ------------SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS----------------CBGGGTBCTT
T ss_pred ------------CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc----------------cCCCcCchHH
Confidence 67789999999999999987 6889999999999987 888999 999
Q ss_pred HHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 044093 177 HEAVRYN-----QVDVVKMLTK-EDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPA 233 (427)
Q Consensus 177 ~~a~~~~-----~~~~~~~Ll~-~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~ 233 (427)
|+|+..+ ..+++++|++ .|+++. ..+..|.||||+|+..++.+++++|.++....+
T Consensus 120 h~A~~~~~~~~~~~~iv~~Ll~~~gad~~-~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLL-IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp GGGGGCCSCHHHHHHHHHHHHTSTTCCTT-CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCChhhHHHHHHHHHHhcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999844 3468888888 788765 677788888888888888888888876654333
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=7.3e-25 Score=170.27 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=116.9
Q ss_pred chhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044093 115 LLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKE 194 (427)
Q Consensus 115 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~ 194 (427)
.++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+. ++.+++++|++.
T Consensus 4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~-~~~~~v~~Ll~~ 66 (136)
T 1d9s_A 4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA----------------LNRFGRRPIQVMMM-GSAQVAELLLLH 66 (136)
T ss_dssp CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC----------------cCCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence 4667888999999999999999999999999998876 78889999999999 999999999999
Q ss_pred CCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 044093 195 DPSLPYDANNA-GETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKG 263 (427)
Q Consensus 195 ~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 263 (427)
+.++. ..+.. |.||||+|+..++.+++++|+++|++++..+..|.|||++|+..++.+++++|+++++
T Consensus 67 g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 67 GAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp TCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred CCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 98876 56666 8999999999999999999999999999999999999999999999999999988764
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=1.3e-25 Score=183.50 Aligned_cols=158 Identities=12% Similarity=-0.077 Sum_probs=95.2
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCCCCCCC-CCCChHHHHHHHcCCH----HHHHHHHhcCchhhhhccCCCCcHHHHHH
Q 044093 241 TASHAAAFCEDTEMTKVLLSSKGTLTSKPD-QHGWLPLHLAAYLGKH----YVVKELLKADKSAAYKANNKGKIPLHLAA 315 (427)
Q Consensus 241 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~t~l~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 315 (427)
++++.|++.|+.+.++.++..+. +..+ ..|.||||+|+..++. +++++|++.|+++ +.++..|.||||+|+
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGY---EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPLF 83 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSS---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCc---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence 45555666666655555554432 1122 4456666666666553 3566666666665 555666666666666
Q ss_pred HcCC------HHHHHHHHHhCCCCccccCCCCC-cHHHHHHHcC-----CHHHHHHHhc-CCCCCCccccccCCCCchhH
Q 044093 316 LMGR------LNTMQELIRSCPSSCELVDDRGW-NVFHFALHSG-----SRRTVELLLK-SPSLGNLVNEKNDDGNTPLL 382 (427)
Q Consensus 316 ~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~A~~~~-----~~~~~~~Ll~-~~~~g~~~n~~d~~g~tpL~ 382 (427)
..++ .+++++|++.|.+ ++.+|..|+ ||||+|+..+ ..+++++|++ + |++++.+|..|.||||
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~---gad~~~~d~~G~TpL~ 159 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS---GLQLLIKDKWGLTALE 159 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST---TCCTTCCCTTSCCHHH
T ss_pred HcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc---CCCCcccCCCCCCHHH
Confidence 6554 4566666666544 456666666 6666666632 3456666766 5 7777777777777777
Q ss_pred HHHhcCchhH-hhhcccccchhccc
Q 044093 383 EHAVSGSFIQ-SFVCHPKVDRLAFN 406 (427)
Q Consensus 383 ~a~~~~~~~~-~~L~~~gad~~~~~ 406 (427)
+|++.++..+ ++|.+...+.++++
T Consensus 160 ~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 160 FVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccc
Confidence 7777666666 66666666555554
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.4e-24 Score=172.88 Aligned_cols=144 Identities=16% Similarity=0.158 Sum_probs=108.4
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 044093 117 LKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDP 196 (427)
Q Consensus 117 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~ 196 (427)
...+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+ .|+.+++++|++.|.
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~ 68 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNA----------------PNSYGRRPIQVMM-MGSARVAELLLLHGA 68 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC----------------CCSSSCCTTTSSC-TTCHHHHHHHHTTTC
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC----------------CCCCCCCHHHHHH-cCCHHHHHHHHHcCC
Confidence 35677889999999999999999999999888876 7788999999885 889999999999988
Q ss_pred CCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCh
Q 044093 197 SLPYDANNAGET-PLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWL 275 (427)
Q Consensus 197 ~~~~~~~~~~~t-~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t 275 (427)
++. ..+..|.| |||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|++.+.. ++..+..|.|
T Consensus 69 ~~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t 146 (156)
T 1bi7_B 69 EPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG-TRGSNHARID 146 (156)
T ss_dssp CCC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred CCC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC-CCccCcCcCc
Confidence 875 56777888 99999999999999999999999888888888888888888888888888887766 5666777777
Q ss_pred HHHH
Q 044093 276 PLHL 279 (427)
Q Consensus 276 ~l~~ 279 (427)
|.+.
T Consensus 147 ~~~~ 150 (156)
T 1bi7_B 147 AAEG 150 (156)
T ss_dssp ----
T ss_pred cccc
Confidence 7663
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=5e-24 Score=163.35 Aligned_cols=125 Identities=34% Similarity=0.484 Sum_probs=114.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q 044093 272 HGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHS 351 (427)
Q Consensus 272 ~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~ 351 (427)
+|.||||.|++.|+.+++++|++.+.+. +..+..|.||||+|+..++.+++++|++.+.. ++.++..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence 4789999999999999999999998887 67788899999999999999999999998665 577889999999999999
Q ss_pred CCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccc
Q 044093 352 GSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVD 401 (427)
Q Consensus 352 ~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad 401 (427)
++.+++++|+++ |++++.+|..|.||||+|+..++..+ ++|+++|||
T Consensus 79 ~~~~~~~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEA---GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ChHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999998 99999999999999999999999999 999999986
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=3.8e-23 Score=158.40 Aligned_cols=125 Identities=33% Similarity=0.465 Sum_probs=110.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
+|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|++.+.++. .
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~ 63 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA----------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A 63 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC----------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCC----------------cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-c
Confidence 488999999999999999999999988776 77889999999999999999999999988865 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKG 263 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 263 (427)
.+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|+..++.+++++|+++++
T Consensus 64 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred cCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 67788999999999999999999999999988888888899999998888899888888764
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=2.6e-23 Score=161.48 Aligned_cols=127 Identities=23% Similarity=0.254 Sum_probs=108.9
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 044093 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSL 198 (427)
Q Consensus 119 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~ 198 (427)
....+.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|++.+.++
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 73 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNA----------------KDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 445678899999999999999999999988876 7788899999999999999999999998886
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 044093 199 PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSK 262 (427)
Q Consensus 199 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~ 262 (427)
. ..+..|.||||+|+..++.+++++|+++|++++..+..|.|||++|+..++.+++++|++.+
T Consensus 74 ~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 74 N-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp T-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred C-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 5 56778899999999999999999999999998888888899999999988889888888753
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=1e-23 Score=163.70 Aligned_cols=125 Identities=24% Similarity=0.258 Sum_probs=110.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q 044093 270 DQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFAL 349 (427)
Q Consensus 270 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 349 (427)
...+.||||.|+..|+.+++++|++.|.+. +..+..|.||||+|+..++.+++++|++.+.+ ++..|..|.||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence 455779999999999999999999998887 77888899999999999999999999998655 5778889999999999
Q ss_pred HcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccc
Q 044093 350 HSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPK 399 (427)
Q Consensus 350 ~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~g 399 (427)
..++.+++++|+++ |++++.+|..|.||||+|+..++.++ ++|++.|
T Consensus 89 ~~~~~~~v~~Ll~~---g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKH---GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHc---CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999998 99999999999999999999999988 8888876
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=3.2e-24 Score=184.03 Aligned_cols=172 Identities=17% Similarity=0.087 Sum_probs=145.0
Q ss_pred CCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHH
Q 044093 59 PNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADI 138 (427)
Q Consensus 59 ~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 138 (427)
..+.+++.. ++..|+ .+++..+.. .....+..|.||||+|+..|+.++
T Consensus 13 ~~~~~~~l~--~~~~g~-------~~~~~~~~~-----------------------~~~~~~~~g~t~L~~A~~~g~~~~ 60 (244)
T 3ui2_A 13 GEGAMEYLI--EWKDGH-------SPSWVPSSY-----------------------IAADVVSEYETPWWTAARKADEQA 60 (244)
T ss_dssp TTTEEEEEE--EESSCC-------CCEEEEGGG-----------------------SCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCCccHHHH--HHHcCC-------Ccccccccc-----------------------cccccccCCCCHHHHHHHcCCHHH
Confidence 345667777 999999 666544331 112234578999999999999999
Q ss_pred HHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCC
Q 044093 139 VKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGY 218 (427)
Q Consensus 139 v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~ 218 (427)
++.|++ |++++. .+..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+
T Consensus 61 v~~Ll~-~~~~~~----------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~ 123 (244)
T 3ui2_A 61 LSQLLE-DRDVDA----------------VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123 (244)
T ss_dssp HHHTTT-TCCTTC----------------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred HHHHHc-CCCCCC----------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 999999 888876 888999999999999999999999999999875555889999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCc
Q 044093 219 INVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297 (427)
Q Consensus 219 ~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~ 297 (427)
.+++++|+++|++++..+..|.||||+|+..+. ...+.+||++|+..|+.+++++|++.+.
T Consensus 124 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 124 PEVVEALVELGADIEVEDERGLTALELAREILK------------------TTPKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh------------------ccCCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 999999999999999999999999999986221 2456799999999999999999988643
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=2e-23 Score=162.39 Aligned_cols=128 Identities=22% Similarity=0.170 Sum_probs=101.3
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH
Q 044093 268 KPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHF 347 (427)
Q Consensus 268 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 347 (427)
.++..|.||||.|+..|+.+++++|++.|.++ +..+..|.||||+|+..++.+++++|++.+.. ++.++..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence 45777888888888888888888888888776 67777888888888888888888888887654 56678888888888
Q ss_pred HHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhccccc
Q 044093 348 ALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKV 400 (427)
Q Consensus 348 A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~ga 400 (427)
|+..++.+++++|+++ |++++.+|..|.||||+|+..+...+ .+|.+.+.
T Consensus 83 A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 8888888888888887 88888888888888888888777777 66665544
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=2.5e-23 Score=161.81 Aligned_cols=114 Identities=25% Similarity=0.388 Sum_probs=106.3
Q ss_pred hccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchh
Q 044093 302 KANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381 (427)
Q Consensus 302 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL 381 (427)
.++..|.||||+|+..++.+++++|++.+.+ ++.++..|+||||+|+..++.+++++|+++ |++++.+|..|.|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQH---KALVNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCcccCcCCCCCCHH
Confidence 5678899999999999999999999998665 677899999999999999999999999998 999999999999999
Q ss_pred HHHHhcCchhH-hhhcccccchhcccccCCChhhHHhhc
Q 044093 382 LEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDIICSD 419 (427)
Q Consensus 382 ~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a~~~ 419 (427)
|+|+..++..+ ++|+++|++++.+|..|.||+|+|+..
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~ 119 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc
Confidence 99999999999 999999999999999999999999764
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=5.8e-23 Score=168.16 Aligned_cols=142 Identities=21% Similarity=0.157 Sum_probs=127.0
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 044093 119 ANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSL 198 (427)
Q Consensus 119 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~ 198 (427)
.+..|.||||+|+..|+.++++.|++ |++++. .+..|.||||+|+..|+.+++++|++.|+++
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~----------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 102 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDA----------------VDENGRTALLFVAGLGSDKCVRLLAEAGADL 102 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC----------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 35578999999999999999999999 888876 8889999999999999999999999999998
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHH
Q 044093 199 PYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLH 278 (427)
Q Consensus 199 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~ 278 (427)
+...+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++. ..+.++++
T Consensus 103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~ 164 (183)
T 3deo_A 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT------------------TPKGNPMQ 164 (183)
T ss_dssp TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHH
T ss_pred CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHH
Confidence 755558899999999999999999999999999999999999999999874321 34568999
Q ss_pred HHHHcCCHHHHHHHHhc
Q 044093 279 LAAYLGKHYVVKELLKA 295 (427)
Q Consensus 279 ~a~~~~~~~~~~~Ll~~ 295 (427)
+|++.|..+++++|.++
T Consensus 165 ~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 165 FGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHcCHHHHHHHHHHh
Confidence 99999999999998764
No 95
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.89 E-value=2.1e-23 Score=176.66 Aligned_cols=137 Identities=18% Similarity=0.103 Sum_probs=112.9
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q 044093 270 DQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFAL 349 (427)
Q Consensus 270 ~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~ 349 (427)
+..|.||||.|+..|+.+++++|++.|.++ +..+..|.||||+|+..|+.+++++|++..+.+++.+|..|+||||+|+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence 456789999999999999999999999887 7888999999999999999999999999856667889999999999999
Q ss_pred HcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcccccCC
Q 044093 350 HSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNC 410 (427)
Q Consensus 350 ~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~ 410 (427)
..++.+++++|+++ |++++.+|..|.||||+|+..+...+ +.|++.|++.+.+|..|+
T Consensus 149 ~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 149 WKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp HHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence 99999999999999 99999999999999999999999999 999999999988887664
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=5.2e-23 Score=156.79 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=76.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHH
Q 044093 305 NKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEH 384 (427)
Q Consensus 305 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a 384 (427)
..|.||||+|+..|+.+++++|++.+.. ++.++..|+||||+|+..++.+++++|++. |++++.+|..|+||||+|
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLK---GADINAPDKHHITPLLSA 80 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCcCCCCCCCHHHHH
Confidence 3456777777777777777777776544 456667777777777777777777777776 777777777777777777
Q ss_pred HhcCchhH-hhhcccccchhcccccCCChhhHHh
Q 044093 385 AVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDIIC 417 (427)
Q Consensus 385 ~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a~ 417 (427)
+..++..+ ++|+++|++++.+|..|+||+|+|.
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 77777776 7777777777777777777777764
No 97
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=4e-23 Score=169.17 Aligned_cols=140 Identities=18% Similarity=0.142 Sum_probs=116.0
Q ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHhhcccc--cCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChH
Q 044093 25 EKNFELMDSLYKAAVEGHTDQFRAHAQMLDQI--LTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSE 102 (427)
Q Consensus 25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~ 102 (427)
..+..|.||||.|+..|+.+++++|++ +.++ .+..|.||||+ |+..|+ .+++++|++.|++
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~--A~~~~~-------~~~v~~Ll~~ga~------- 101 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLF--VAGLGS-------DKCVRLLAEAGAD------- 101 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHH--HHHHTC-------HHHHHHHHHTTCC-------
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHH--HHHcCC-------HHHHHHHHHcCCC-------
Confidence 356789999999999999999999999 7665 78889999999 999999 9999998865554
Q ss_pred HHHHHHHhhCccchhccC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHH
Q 044093 103 HFVRGILEMCPGLLLKAN-TKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVR 181 (427)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~ 181 (427)
++..+ ..|.||||+|+..|+.+++++|+++|++++. +|..|.||||+|+.
T Consensus 102 -------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~----------------~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 102 -------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV----------------EDERGLTALELARE 152 (183)
T ss_dssp -------------TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTC----------------CCTTSCCHHHHHHH
T ss_pred -------------CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcC----------------CCCCCCCHHHHHHH
Confidence 44455 7789999999999999999999999988876 88889999999987
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044093 182 YNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIIST 228 (427)
Q Consensus 182 ~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~ 228 (427)
.++. ..+.++|++|+..|..+++++|.++
T Consensus 153 ~~~~------------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 153 ILKT------------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHT------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred hccC------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 4322 3467889999988888888888754
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=178.20 Aligned_cols=138 Identities=18% Similarity=0.104 Sum_probs=119.3
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCchhhhh-----ccCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCccccCCCCCcH
Q 044093 273 GWLPLHLAAYLGKHYVVKELLKADKSAAYK-----ANNKGKIPLHLAALM---GRLNTMQELIRSCPSSCELVDDRGWNV 344 (427)
Q Consensus 273 ~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 344 (427)
..++|+.|+..++.+.++.|++.|.++... .+..|.||||+|+.. ++.+++++|++.+.+ ++.+|..|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence 457899999999999999999998887322 577899999999997 899999999999765 67889999999
Q ss_pred HHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcccccCCChhhHHhhcc
Q 044093 345 FHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAEDIICSDK 420 (427)
Q Consensus 345 l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l~~a~~~~ 420 (427)
||+|+..++.+++++|+++ |++++.+|..|.||||+|+..++.++ ++|+++|++ .|.||+|+|+..+
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~---gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWV 297 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHT---TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC------
T ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcC
Confidence 9999999999999999998 99999999999999999999999999 999999997 6899999998654
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=8.4e-23 Score=175.13 Aligned_cols=141 Identities=18% Similarity=0.143 Sum_probs=115.9
Q ss_pred hhhHHHHHHHHHHHhcCchHHHHHHHhhcccc--cCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCChH
Q 044093 25 EKNFELMDSLYKAAVEGHTDQFRAHAQMLDQI--LTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSSSE 102 (427)
Q Consensus 25 ~~~~~~~~~l~~A~~~g~~~~~~~ll~~~~~~--~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~ 102 (427)
..+.+|.||||.||..|+.+++++|++ |.++ .+..|.||||+ |+..|+ .+++++|++.|++
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~--A~~~g~-------~~~v~~Ll~~ga~------- 102 (244)
T 3ui2_A 40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLF--VAGLGS-------DKCVRLLAEAGAD------- 102 (244)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHH--HHHHTC-------HHHHHHHHHTTCC-------
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHH--HHHCCC-------HHHHHHHHHcCCC-------
Confidence 345689999999999999999999999 7665 78889999999 999999 9999998866554
Q ss_pred HHHHHHHhhCccchhccC-CCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHH
Q 044093 103 HFVRGILEMCPGLLLKAN-TKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVR 181 (427)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~ 181 (427)
++..+ ..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+.
T Consensus 103 -------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~----------------~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 103 -------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV----------------EDERGLTALELARE 153 (244)
T ss_dssp -------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHH
T ss_pred -------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------------CCCCCCcHHHHHHH
Confidence 44455 6788999999999999999999999988876 78889999999875
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 044093 182 YNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTC 229 (427)
Q Consensus 182 ~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~ 229 (427)
.++ ...+.+||++|+..|+.+++++|++++
T Consensus 154 ~~~------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 154 ILK------------------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp HHT------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 221 245778899988888888888888764
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=5.6e-22 Score=151.00 Aligned_cols=112 Identities=24% Similarity=0.302 Sum_probs=98.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 044093 120 NTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLP 199 (427)
Q Consensus 120 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~ 199 (427)
+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|++.+.++.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 67 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR----------------TLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS----------------CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc----------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 45678999999999999999999999988876 78889999999999999999999999998876
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHh
Q 044093 200 YDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAF 248 (427)
Q Consensus 200 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~ 248 (427)
..+..|.||||+|+..++.+++++|+++|++++..+..|.||+++|..
T Consensus 68 -~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 68 -APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred -cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 577789999999999999999999999999999999999999998843
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.8e-21 Score=169.73 Aligned_cols=124 Identities=15% Similarity=0.162 Sum_probs=111.6
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCchhh-----hhccCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCccccCCCCCcHH
Q 044093 274 WLPLHLAAYLGKHYVVKELLKADKSAA-----YKANNKGKIPLHLAALM---GRLNTMQELIRSCPSSCELVDDRGWNVF 345 (427)
Q Consensus 274 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~-----~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 345 (427)
.++|+.|+..++.+.++.+++.|.+.. ...+..|.||||+|+.. ++.+++++|++.+.+ ++.+|..|+|||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~TpL 209 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTAL 209 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCHH
Confidence 467889999999999999999888752 33367899999999999 899999999999766 678999999999
Q ss_pred HHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccc
Q 044093 346 HFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVD 401 (427)
Q Consensus 346 ~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad 401 (427)
|+|+..|+.+++++|+++ |++++.+|..|.||||+|+..|+.++ ++|+++|++
T Consensus 210 h~A~~~g~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRG---KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHc---CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999998 99999999999999999999999999 999999985
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=8.4e-22 Score=166.70 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=114.1
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHc-C
Q 044093 117 LKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKE-D 195 (427)
Q Consensus 117 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-~ 195 (427)
...+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++. +
T Consensus 67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g 130 (222)
T 3ehr_A 67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG----------------LDKAGSTALYWACHGGHKDIVEMLFTQPN 130 (222)
T ss_dssp HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHTTSTT
T ss_pred cccccccccccccccccCcHHHHHHHHhCCCCccc----------------cCCCCCCHHHHHHHcCCHHHHHHHHcCCC
Confidence 34577899999999999999999999999999886 788899999999999999999999998 7
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 044093 196 PSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGT 264 (427)
Q Consensus 196 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~ 264 (427)
.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||++|+..+..++++.|+..+..
T Consensus 131 ~~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~ 198 (222)
T 3ehr_A 131 IELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV 198 (222)
T ss_dssp CCCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence 7765 6788999999999999999999999999999999999999999999999999999999887655
No 103
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=165.92 Aligned_cols=122 Identities=20% Similarity=0.158 Sum_probs=59.7
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCC-----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 044093 175 ALHEAVRYNQVDVVKMLTKEDPSLPYD-----ANNAGETPLYLAAER---GYINVVEDIISTCKSPADHGPMGRTASHAA 246 (427)
Q Consensus 175 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~-----~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a 246 (427)
+|+.|+..++.+.++.|+..+.++... .+..|.||||+|+.. ++.+++++|+++|++++..|..|.||||+|
T Consensus 154 ~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A 233 (301)
T 2b0o_E 154 RLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA 233 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHH
T ss_pred HHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 355555555555555555555444321 244445555555543 445555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhcCc
Q 044093 247 AFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKHYVVKELLKADK 297 (427)
Q Consensus 247 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~ 297 (427)
+..++.+++++|++.+++ ++..+..|.|||++|+..++.+++++|++.|+
T Consensus 234 ~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga 283 (301)
T 2b0o_E 234 ALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQA 283 (301)
T ss_dssp HHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence 555555555555544433 34444445555555555555555555554443
No 104
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=3.6e-21 Score=144.68 Aligned_cols=108 Identities=25% Similarity=0.309 Sum_probs=97.8
Q ss_pred hccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchh
Q 044093 302 KANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381 (427)
Q Consensus 302 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL 381 (427)
.++..|.||||+|+..++.+++++|++.+.. ++..+..|.||||+|+..++.+++++|+++ |++++.+|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHH
Confidence 4677899999999999999999999998665 677899999999999999999999999998 999999999999999
Q ss_pred HHHHhcCchhH-hhhcccccchhcccccCCChh
Q 044093 382 LEHAVSGSFIQ-SFVCHPKVDRLAFNHHNCSAE 413 (427)
Q Consensus 382 ~~a~~~~~~~~-~~L~~~gad~~~~~~~g~t~l 413 (427)
|+|+..++..+ ++|+++|+|++.++..|.+|-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999 999999999999999999874
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.1e-20 Score=135.95 Aligned_cols=92 Identities=32% Similarity=0.480 Sum_probs=79.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHH
Q 044093 306 KGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHA 385 (427)
Q Consensus 306 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~ 385 (427)
+|.||||+|+..++.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA---GADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCccCCCCCCHHHHHH
Confidence 378899999999999999999988655 577888999999999999999999999988 9999999999999999999
Q ss_pred hcCchhH-hhhcccccc
Q 044093 386 VSGSFIQ-SFVCHPKVD 401 (427)
Q Consensus 386 ~~~~~~~-~~L~~~gad 401 (427)
..++.++ ++|+++||+
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 9998888 999988875
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.83 E-value=1.3e-20 Score=178.49 Aligned_cols=126 Identities=20% Similarity=0.180 Sum_probs=83.3
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCchhhhhc------cCCCCcHHHHHHH---cCCHHHHHHHHHhCCCCccccCCCCCcHH
Q 044093 275 LPLHLAAYLGKHYVVKELLKADKSAAYKA------NNKGKIPLHLAAL---MGRLNTMQELIRSCPSSCELVDDRGWNVF 345 (427)
Q Consensus 275 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~------~~~g~t~L~~A~~---~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l 345 (427)
+.|+.|+..|+.+.++.|++.|++. +.. +..|.||||+|+. .|+.+++++|++.+.+ ++.+|..|+|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcHH
Confidence 5567777777777777777766665 333 5567777777755 6667777777776544 466677777777
Q ss_pred HHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccccchhcc
Q 044093 346 HFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPKVDRLAF 405 (427)
Q Consensus 346 ~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~gad~~~~ 405 (427)
|+|+..|+.+++++|+++ |++++.+|..|.||||+|+..|+..+ ++|+++|++++..
T Consensus 212 h~A~~~g~~~~v~~Ll~~---ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKG---RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHTTTTCHHHHHHHHHT---CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 777777777777777776 77777777777777777777777766 7777777776664
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=6e-20 Score=132.08 Aligned_cols=93 Identities=33% Similarity=0.511 Sum_probs=80.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 044093 122 KGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTKEDPSLPYD 201 (427)
Q Consensus 122 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~ 201 (427)
+|.||||+|+..|+.+++++|++.|++++. ++..|.||||+|+..++.+++++|++.|+++. .
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~----------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~ 63 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA----------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A 63 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence 478999999999999999999999998876 78889999999999999999999999998876 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 044093 202 ANNAGETPLYLAAERGYINVVEDIISTCKS 231 (427)
Q Consensus 202 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~ 231 (427)
.+..|.||||+|+..++.+++++|+++|++
T Consensus 64 ~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 677899999999999999999999988864
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=2.1e-20 Score=168.40 Aligned_cols=144 Identities=17% Similarity=0.123 Sum_probs=99.2
Q ss_pred CCCChHHHHHHHc-CCHHHHHHHHhcCchhhhhcc--CCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH
Q 044093 271 QHGWLPLHLAAYL-GKHYVVKELLKADKSAAYKAN--NKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHF 347 (427)
Q Consensus 271 ~~~~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 347 (427)
..+.|+||.|+.. ++.++++.|++.|+++ +..+ ..|.||||+|+..++.+++++|++.+.+ ++..|..|+||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence 3455788888888 8888888888888777 5555 6788888888888888888888887654 56778888888888
Q ss_pred HHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-hhhcccc---cchhcccccCCChhhHHhhc
Q 044093 348 ALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ-SFVCHPK---VDRLAFNHHNCSAEDIICSD 419 (427)
Q Consensus 348 A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~-~~L~~~g---ad~~~~~~~g~t~l~~a~~~ 419 (427)
|+..++.+++++|+++ |++++.+|..|.||||+|+..++..+ ++|+..| ++....+..+.|+++++...
T Consensus 275 A~~~g~~~~v~~LL~~---Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 275 ATILGHTGLACLFLKR---GADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF 347 (368)
T ss_dssp HHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred HHHcCcHHHHHHHHHC---cCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence 8888888888888887 88888888888888888888888877 7777665 34445666777777776543
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=1.3e-19 Score=163.37 Aligned_cols=164 Identities=15% Similarity=0.078 Sum_probs=105.1
Q ss_pred CCCCcHHHHHHhc-CCHHHHHHHHhcCCCCCCCCC--CCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHH
Q 044093 237 PMGRTASHAAAFC-EDTEMTKVLLSSKGTLTSKPD--QHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHL 313 (427)
Q Consensus 237 ~~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~ 313 (427)
..+.++||.|+.. ++.++++.|++.+.+ ++..+ ..|.||||+|+..++.+++++|+++|+++ +..+..|.||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGAD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence 3455788888888 888888888887766 45555 77889999999999999999999988887 7788889999999
Q ss_pred HHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchhHHHHhcCchhH-
Q 044093 314 AALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPLLEHAVSGSFIQ- 392 (427)
Q Consensus 314 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL~~a~~~~~~~~- 392 (427)
|+..++.+++++|++.+.+ ++..|..|.||||+|+..++.+++++|+.....+++....+..+.|+++++........
T Consensus 275 A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~~~~~ 353 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASD 353 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------------
T ss_pred HHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHhhcCC
Confidence 9999999999999988655 57788899999999999999999999987633455666667788888888877543322
Q ss_pred --hhhcccccchh
Q 044093 393 --SFVCHPKVDRL 403 (427)
Q Consensus 393 --~~L~~~gad~~ 403 (427)
+.|...+.+++
T Consensus 354 ~~ekl~r~~~~~~ 366 (368)
T 3jue_A 354 DPEKLSRRSHDLH 366 (368)
T ss_dssp -------------
T ss_pred CHHHHHhcCCCcC
Confidence 56666665543
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=4.6e-19 Score=154.49 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=21.0
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHh
Q 044093 118 KANTKGETLLHIAARHGHADIVKDLIAE 145 (427)
Q Consensus 118 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 145 (427)
..|..+.+.++.+...|+....+++...
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~ 88 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECC 88 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTT
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhh
Confidence 3667788889999988888777665443
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=7.4e-19 Score=166.48 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=117.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHH---cCCHHHHHHHHHcCCCCC
Q 044093 123 GETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVR---YNQVDVVKMLTKEDPSLP 199 (427)
Q Consensus 123 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~---~~~~~~~~~Ll~~~~~~~ 199 (427)
..+.||.|+..|+.+.|+.|++.|++++..... ...+..|.||||+|+. .|+.+++++|++.|++++
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~----------~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn 201 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPG----------PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD 201 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCC----------SSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTT
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCC----------cccccccchHHHHHHHhcccccHHHHHHHHHcCCCCC
Confidence 346799999999999999999999998862110 1137889999999977 899999999999999986
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCChHHHH
Q 044093 200 YDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTEMTKVLLSSKGTLTSKPDQHGWLPLHL 279 (427)
Q Consensus 200 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~l~~ 279 (427)
..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++.+++++|++.++.. +. +|+|.
T Consensus 202 -~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~-~~------~~~h~ 273 (497)
T 3lvq_E 202 -AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT-FA------FPLHV 273 (497)
T ss_dssp -CCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----------------
T ss_pred -ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC-CC------Cccee
Confidence 67889999999999999999999999999999999999999999999999999999999988763 22 56776
Q ss_pred HHH
Q 044093 280 AAY 282 (427)
Q Consensus 280 a~~ 282 (427)
+..
T Consensus 274 ~~~ 276 (497)
T 3lvq_E 274 DYS 276 (497)
T ss_dssp ---
T ss_pred ecc
Confidence 543
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.79 E-value=1.4e-19 Score=135.83 Aligned_cols=109 Identities=28% Similarity=0.303 Sum_probs=98.8
Q ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHH
Q 044093 268 KPDQHGWLPLHLAAYLGKHYVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHF 347 (427)
Q Consensus 268 ~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~ 347 (427)
.++..|.||||.|+..++.+++++|++.+.++ +..+..|.||||+|+..++.+++++|++.+.. ++.+|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 45788999999999999999999999999887 77888999999999999999999999998665 67889999999999
Q ss_pred HHHcCCHHHHHHHhcCCCCCCccccccCCCCchh
Q 044093 348 ALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381 (427)
Q Consensus 348 A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL 381 (427)
|+..++.+++++|+++ |+++|.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~---ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAK---GADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTT---SSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHc---CCCCCcCCccccccc
Confidence 9999999999999999 999999999999883
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=5.6e-17 Score=120.32 Aligned_cols=95 Identities=23% Similarity=0.283 Sum_probs=76.5
Q ss_pred cchhccCCCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 044093 114 GLLLKANTKGETLLHIAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTTNEAKDTALHEAVRYNQVDVVKMLTK 193 (427)
Q Consensus 114 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~ 193 (427)
......+.+|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..++.+++++|++
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~----------------~d~~g~tpLh~A~~~~~~~~v~~Ll~ 78 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA----------------KDKNGSTPLHLAARNGHLEVVKLLLE 78 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc----------------cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 34566788889999999999999999999999888776 77888899999999999999999999
Q ss_pred cCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 044093 194 EDPSLPYDANNAGETPLYLAAERGYINVVEDI 225 (427)
Q Consensus 194 ~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~L 225 (427)
+|+++. ..+..|.||||+|+..++.+++++|
T Consensus 79 ~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 79 AGADVX-AQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCCCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence 888865 5677888999999998888888876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=6.6e-17 Score=119.94 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=65.0
Q ss_pred hccCCCCcHHHHHHHcCCHHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccCCCCchh
Q 044093 302 KANNKGKIPLHLAALMGRLNTMQELIRSCPSSCELVDDRGWNVFHFALHSGSRRTVELLLKSPSLGNLVNEKNDDGNTPL 381 (427)
Q Consensus 302 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~g~~~n~~d~~g~tpL 381 (427)
..+..|.|+||+|+..|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|..|.|||
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~---ga~~~~~d~~g~tpl 94 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEA---GADVXAQDKFGKTAF 94 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccccccCCCcHH
Confidence 3455677777777777777777777776544 466777777777777777777777777777 777777777777777
Q ss_pred HHHHhcCchhH-hhh
Q 044093 382 LEHAVSGSFIQ-SFV 395 (427)
Q Consensus 382 ~~a~~~~~~~~-~~L 395 (427)
|+|+..++..+ ++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 77777777766 554
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=71.93 E-value=2.9 Score=22.59 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=17.4
Q ss_pred HHHHHHhcCchHHHHHHHhh
Q 044093 33 SLYKAAVEGHTDQFRAHAQM 52 (427)
Q Consensus 33 ~l~~A~~~g~~~~~~~ll~~ 52 (427)
.++.||..||++.++.|-.+
T Consensus 16 qiyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHH
Confidence 78999999999999988653
No 116
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=39.38 E-value=1.3e+02 Score=23.20 Aligned_cols=131 Identities=13% Similarity=0.031 Sum_probs=69.9
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHhcCCHH
Q 044093 174 TALHEAVRYNQVDVVKMLTKEDPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPADHGPMGRTASHAAAFCEDTE 253 (427)
Q Consensus 174 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~l~~a~~~~~~~ 253 (427)
+=+..|+..|+++...-+.+.... .......=..|...|+.++++....+..++. ..+......|+.+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l~~-----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~-------~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKLND-----SITWERLIQEALAQGNASLAEMIYQTQHSFD-------KLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHCC-----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH-------HHHHHHHHHTCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhCC-----HHHHHHHHHHHHHcCChHHHHHHHHHhCCHH-------HHHHHHHHhCCHH
Confidence 446677777877776665543211 1112223345667777887777776554332 1233344455666
Q ss_pred HHHHHHhcCCCCCCCCCCCCChHHHHHHHcCCH-HHHHHHHhcCchhhhhccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 044093 254 MTKVLLSSKGTLTSKPDQHGWLPLHLAAYLGKH-YVVKELLKADKSAAYKANNKGKIPLHLAALMGRLNTMQELIRSC 330 (427)
Q Consensus 254 ~~~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~-~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 330 (427)
-++.+.+.. ....+....++.+...|+. +++++|.+.+.-+ -+...|..+|..+..+.+++.-
T Consensus 78 ~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~---------eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP---------LAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH---------HHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH---------HHHHHHHHcCcHHHHHHHHHHh
Confidence 555554321 1122233456666666663 4556665554333 2445566677777777776653
No 117
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=35.29 E-value=38 Score=29.66 Aligned_cols=191 Identities=12% Similarity=0.097 Sum_probs=91.9
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC----CCCCCCCc
Q 044093 168 TNEAKDTALHEAVRYNQVDVVKMLTKE--DPSLPYDANNAGETPLYLAAERGYINVVEDIISTCKSPA----DHGPMGRT 241 (427)
Q Consensus 168 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~----~~~~~~~~ 241 (427)
.|.+|...+.-.+..++.+....+++. |.-.....+..|...+..+......+-...+++.- ... ..|..|+.
T Consensus 69 ~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el-~~~~~~L~~d~~Gn~ 147 (351)
T 3gvo_A 69 TDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKEL-DGHVLKCVKDQNGNH 147 (351)
T ss_dssp TSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGG-TTCHHHHHHSTTHHH
T ss_pred hChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHh-hhhHHHHHHhhhhhH
Confidence 667777777777777777666655543 11111123444555555555555444333333211 111 12344444
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCC--CCCCCCCChHHHHHHHcCCHH----HHHHHHhcCchhhhhccCCCCcHHHHHH
Q 044093 242 ASHAAAFCEDTEMTKVLLSSKGTLT--SKPDQHGWLPLHLAAYLGKHY----VVKELLKADKSAAYKANNKGKIPLHLAA 315 (427)
Q Consensus 242 ~l~~a~~~~~~~~~~~Ll~~~~~~~--~~~~~~~~t~l~~a~~~~~~~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 315 (427)
.+..+......+....+++.-.... -.....|...+..+......+ +++.|...- ..-..|..|.-.+..+.
T Consensus 148 ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~--~~L~~d~~Gn~ViQ~~l 225 (351)
T 3gvo_A 148 VVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHT--EQLVQDQYGNYVIQHVL 225 (351)
T ss_dssp HHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTH--HHHHTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhH--HhcCCCchHHHHHHHHH
Confidence 4444444333333333332211000 012334444444444444433 233332221 11346677877888888
Q ss_pred HcCCHHHHHHHHHhCCCCc--cccCCCCCcHHHHHHHcCCHHHHHHHh
Q 044093 316 LMGRLNTMQELIRSCPSSC--ELVDDRGWNVFHFALHSGSRRTVELLL 361 (427)
Q Consensus 316 ~~~~~~~~~~Ll~~~~~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll 361 (427)
..+..+..+.+++.-...+ -..+..|...+..+......+.-+.++
T Consensus 226 ~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii 273 (351)
T 3gvo_A 226 EHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLI 273 (351)
T ss_dssp HHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHH
Confidence 8887777777776533221 124566666777777766655333333
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=31.01 E-value=1.7e+02 Score=26.06 Aligned_cols=61 Identities=15% Similarity=0.218 Sum_probs=43.8
Q ss_pred HHHHcCCHHHHHHHHHhcCCCCCCCCcchhHHHHHHhcCC--CCCCCcHHHHHHHcCCHHHHHHHHH
Q 044093 129 IAARHGHADIVKDLIAECKKPHQNDPEKGVEAARLMLGTT--NEAKDTALHEAVRYNQVDVVKMLTK 193 (427)
Q Consensus 129 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~a~~~~~~~~~~~Ll~ 193 (427)
..+..|+...|+..+..|.+++-.-. ..+. .+++.. -.-|.|.+|+|++..+-+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt--~~e~--~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLT--ADEV--RLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCC--HHHH--HHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccC--HHHH--HHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 44567999999999999988765221 1111 123322 2458899999999999999999986
No 119
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=27.49 E-value=29 Score=30.36 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=51.0
Q ss_pred hhHHHHHHHHHHHhcCchHHHHHHHhhc----ccc-cCCCCCceEEEEeeecCCCCCCCCchhhhHHHHHHHHHhhhCCC
Q 044093 26 KNFELMDSLYKAAVEGHTDQFRAHAQML----DQI-LTPNENTILHVHITARPDQTMRPNNELKSSLWMMMSTLKKQSSS 100 (427)
Q Consensus 26 ~~~~~~~~l~~A~~~g~~~~~~~ll~~~----~~~-~~~~~~~~L~~~~A~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~ 100 (427)
.|..|.-.|......++.+..+.+++.- ..+ .|..|...+.. ...++. .+....++
T Consensus 33 ~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQk--lle~~~-------~~~~~~i~---------- 93 (351)
T 3gvo_A 33 QDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQK--FFEFGS-------LDQKLALA---------- 93 (351)
T ss_dssp TSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHH--HHHHCC-------HHHHHHHH----------
T ss_pred cCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHH--HHhhCC-------HHHHHHHH----------
Confidence 5555666778888888877666666532 222 77777766666 666666 55544444
Q ss_pred hHHHHHHHHhhCccchhccCCCCCcHHHHHHHcCCHHHHHHHH
Q 044093 101 SEHFVRGILEMCPGLLLKANTKGETLLHIAARHGHADIVKDLI 143 (427)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 143 (427)
..+. . ...--..+..|.-.+..+......+-...++
T Consensus 94 -~~i~----g--~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~ 129 (351)
T 3gvo_A 94 -TRIR----G--HVLPLALQMYGCRVIQKALESISSDQQSEMV 129 (351)
T ss_dssp -HHHT----T--CHHHHHTSTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred -HHHH----h--hHHHHhhCHHhHHHHHHHHHhCCHHHHHHHH
Confidence 1110 0 0111235556666666666655555444444
Done!