BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044094
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 34/254 (13%)
Query: 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLL 74
HV +P GH IP+++ FA R V LT I+ + + +
Sbjct: 8 HVAIIPSPGMGHLIPLVE----FAKRLVHLHGLTVTFVIA--------GEGPPSKAQRTV 55
Query: 75 LLNFPSTAAN--LPP----NCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQ-PDAI 127
L + PS+ ++ LPP + + I SR +S +++ L D V + P A+
Sbjct: 56 LDSLPSSISSVFLPPVDLTDLSSSTRIESR-ISLTVTRSNPELRKVFDSFVEGGRLPTAL 114
Query: 128 ISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQHKPNVN--VSSD----TETFL 181
+ D+ ++A ++ +P +++ T LS + H P ++ VS + TE +
Sbjct: 115 VVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFL----HLPKLDETVSCEFRELTEPLM 170
Query: 182 VPGLPRPVYITQSQMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEK 241
+PG PV P Q + D ++ K + + G++ NTFFE+EP+ IK ++
Sbjct: 171 LPGC-VPVAGKDFLDPAQDRKD-DAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE 228
Query: 242 --VTGKVVYPVGPV 253
+ VYPVGP+
Sbjct: 229 PGLDKPPVYPVGPL 242
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 98/261 (37%), Gaps = 34/261 (13%)
Query: 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLL 74
HV +P+ GH P+ +A++ RG T + T N R S +
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTD---- 65
Query: 75 LLNFPSTAANLPPNCENLDA---IPS--RDLSYNFSKAIMMLHPQADDLVRQCQPDAIIS 129
NF S L P + D +P+ + + NF K L + + ++S
Sbjct: 66 -FNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVS 124
Query: 130 DMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAA------------AQHKPNVNVSSDT 177
D +T + A ++ +P ++Y + SL L+V N +T
Sbjct: 125 DCCMSFTIQAAEEFELPNVLYFSSSACSL-LNVMHFRSFVERGIIPFKDESYLTNGCLET 183
Query: 178 ETFLVPGLPR-----PVYITQSQMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIE 232
+ +PGL V ++ P N + EFF ++ ++ NTF E+E
Sbjct: 184 KVDWIPGLKNFRLKDIVDFIRTTNP-----NDIMLEFFIEVADRVNKDTTILLNTFNELE 238
Query: 233 PDYIKHYEKVTGKVVYPVGPV 253
D I T +YP+GP+
Sbjct: 239 SDVINALSS-TIPSIYPIGPL 258
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 138 EIARKYGIPRLVY--HGTCCFSLSLSVAAAQHKPNVNVSS-DTETFLVPGLPRPVYITQS 194
++ ++GIP ++ SL LS+ Q + + S D + +PG+ V +
Sbjct: 129 DVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV--PSN 186
Query: 195 QMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDYI----KHYEKVTGKVVYPV 250
+PD F + KL + R++ G++ NTF ++E I H EK+ +Y V
Sbjct: 187 VLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP--IYAV 244
Query: 251 GPV 253
GP+
Sbjct: 245 GPL 247
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 138 EIARKYGIPRLVY--HGTCCFSLSLSVAAAQHKPNVNVSS-DTETFLVPGLPRPVYITQS 194
++ ++GIP ++ SL LS+ Q + + S D + +PG+ V +
Sbjct: 129 DVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGISNQV--PSN 186
Query: 195 QMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDYI----KHYEKVTGKVVYPV 250
+PD F + KL + R++ G++ NTF ++E I H EK+ +Y V
Sbjct: 187 VLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPP--IYAV 244
Query: 251 GPV 253
GP+
Sbjct: 245 GPL 247
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPL 51
Q H+ F GH P + + A RG + T +TTPL
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPL 42
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Query: 38 ASRGVKATILTTPLNISRFESSINR----DDYH---HHNPIKLLLLNFPSTAANLPPN-C 89
+ G+K LT P+ + F+ I DY +KL+ L+ P AA+LP N C
Sbjct: 1 SKNGLKKRKLTNPVQLDDFDGYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPMNRC 60
Query: 90 ENLDAIPSRDLSYNFSKA 107
+N + L Y+FS+
Sbjct: 61 KNR---YTNILPYDFSRV 75
>pdb|3UDF|A Chain A, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDF|B Chain B, Crystal Structure Of Apo Pbp1a From Acinetobacter
Baumannii
pdb|3UDI|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDI|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Penicillin G
pdb|3UDX|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UDX|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Imipenem
pdb|3UE0|A Chain A, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE0|B Chain B, Crystal Structure Of Acinetobacter Baumannii Pbp1a In
Complex With Aztreonam
pdb|3UE1|A Chain A, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
pdb|3UE1|B Chain B, Crystal Strucuture Of Acinetobacter Baumanni Pbp1a In
Complex With Mc- 1
Length = 731
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 220 SYGVVANTFFEIEPDYIKHYEKVTGKVVYPVGP 252
Y AN + ++P +I+ E GKV+Y P
Sbjct: 531 GYATFANGGYRVQPHFIQRIEDAYGKVIYEAKP 563
>pdb|3HL4|A Chain A, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
pdb|3HL4|B Chain B, Crystal Structure Of A Mammalian Ctp:phosphocholine
Cytidylyltransferase With Cdp-Choline
Length = 236
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 82 AANLPPNCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQ-PDAIISDMNFPWT 136
A NL PN + + S +L++NF +M + D V+ C+ D ++ N PWT
Sbjct: 99 AKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVR--NAPWT 152
>pdb|3G0M|A Chain A, Crystal Structure Of Cysteine Desulfuration Protein Sufe
From Salmonella Typhimurium Lt2
Length = 141
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 146 PRLVYHGTCCFSLSLSVAAAQHKPNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNTD 205
P+ HG C S V + + D++ +V GL V+I QM Q + D
Sbjct: 47 PQNTIHG--CQSQVWIVMRRNANGIIELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFD 104
Query: 206 LQEFFEKLIKAE 217
++ +FEK+ A+
Sbjct: 105 VRPWFEKMALAQ 116
>pdb|3L0O|A Chain A, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
pdb|3L0O|B Chain B, Structure Of Rna-Free Rho Transcription Termination Factor
From Thermotoga Maritima
Length = 427
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%)
Query: 101 SYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKY---------GIPRLVYH 151
Y F + ++ +HP+ +R+ + + + S+ + + RK+ G+ R
Sbjct: 54 GYFFGEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGVIRKPKE 113
Query: 152 GTCCFSLSLSVAAAQHKPNVNVSSDTETF--LVPGLPRPVYITQSQMPDQFFGNTDLQEF 209
G F++ + + A ++P V +D F L P PR +I ++ D +T L +
Sbjct: 114 GEKYFAM-IKIEAINYRP-VEAVNDRVNFDNLTPDYPRERFILET---DPKIYSTRLIDL 168
Query: 210 FEKLIKAER 218
F + K +R
Sbjct: 169 FAPIGKGQR 177
>pdb|4B28|A Chain A, Crystal Structure Of Dmsp Lyase Rddddp From Roseobacter
Denitrificans
Length = 470
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 39 SRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLL 76
+RG ++ PLNI S N ++ HNP + LL
Sbjct: 92 ARGYAGLLMFDPLNIRYATDSTNMQLWNTHNPFRATLL 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,719,684
Number of Sequences: 62578
Number of extensions: 355396
Number of successful extensions: 780
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 14
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)