Query 044094
Match_columns 279
No_of_seqs 228 out of 1424
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:23:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044094.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044094hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 100.0 6.3E-46 1.4E-50 349.0 26.2 245 11-256 6-252 (491)
2 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.9E-45 1.1E-49 343.0 26.1 242 6-257 2-253 (477)
3 PLN02670 transferase, transfer 100.0 6E-43 1.3E-47 327.4 23.7 240 10-256 3-250 (472)
4 PLN02173 UDP-glucosyl transfer 100.0 2.4E-41 5.1E-46 315.1 23.7 216 11-256 3-228 (449)
5 PLN02992 coniferyl-alcohol glu 100.0 8.5E-41 1.8E-45 313.3 23.5 228 12-256 4-243 (481)
6 PLN02555 limonoid glucosyltran 100.0 1.6E-40 3.5E-45 311.9 23.8 229 11-256 5-248 (480)
7 PLN02152 indole-3-acetate beta 100.0 2.4E-40 5.1E-45 308.9 22.9 217 12-256 2-230 (455)
8 PLN03004 UDP-glycosyltransfera 100.0 3.4E-40 7.3E-45 307.5 23.7 232 12-255 2-245 (451)
9 PLN02410 UDP-glucoronosyl/UDP- 100.0 4.5E-40 9.7E-45 307.4 23.6 222 11-256 5-240 (451)
10 PLN02764 glycosyltransferase f 100.0 6.5E-40 1.4E-44 305.0 24.5 228 11-256 3-236 (453)
11 PLN00164 glucosyltransferase; 100.0 5.4E-40 1.2E-44 309.5 24.0 228 12-256 2-249 (480)
12 PLN03015 UDP-glucosyl transfer 100.0 5.7E-40 1.2E-44 306.3 23.7 228 12-255 2-246 (470)
13 PLN02208 glycosyltransferase f 100.0 3.8E-40 8.1E-45 307.2 22.3 227 11-256 2-230 (442)
14 PLN00414 glycosyltransferase f 100.0 5.9E-40 1.3E-44 306.3 22.6 225 11-256 2-229 (446)
15 PLN02562 UDP-glycosyltransfera 100.0 1.2E-39 2.5E-44 305.1 24.1 226 10-256 3-246 (448)
16 PLN03007 UDP-glucosyltransfera 100.0 5E-39 1.1E-43 303.8 26.3 245 11-256 3-254 (482)
17 PLN02210 UDP-glucosyl transfer 100.0 5.9E-39 1.3E-43 300.7 24.3 223 10-255 5-233 (456)
18 PLN02167 UDP-glycosyltransfera 100.0 6.7E-38 1.4E-42 295.5 22.4 237 11-256 1-254 (475)
19 PLN02207 UDP-glycosyltransfera 100.0 1.7E-37 3.8E-42 290.3 23.8 232 11-256 1-249 (468)
20 PLN02554 UDP-glycosyltransfera 100.0 2.4E-37 5.2E-42 292.2 23.1 228 13-255 2-248 (481)
21 PLN02448 UDP-glycosyltransfera 100.0 5.5E-37 1.2E-41 288.4 23.9 227 10-256 7-245 (459)
22 cd03784 GT1_Gtf_like This fami 99.6 6.3E-15 1.4E-19 136.5 8.6 127 14-155 1-136 (401)
23 KOG1192 UDP-glucuronosyl and U 99.5 2E-16 4.4E-21 150.4 -4.5 236 13-257 5-257 (496)
24 TIGR01426 MGT glycosyltransfer 99.5 1E-13 2.2E-18 128.2 10.8 122 19-153 1-122 (392)
25 PF03033 Glyco_transf_28: Glyc 99.1 1.8E-11 3.9E-16 96.6 2.4 124 16-155 1-132 (139)
26 PHA03392 egt ecdysteroid UDP-g 98.4 7.6E-07 1.7E-11 85.2 9.0 130 15-154 22-168 (507)
27 COG1819 Glycosyl transferases, 98.3 8.6E-07 1.9E-11 82.6 6.7 46 13-58 1-46 (406)
28 PF13528 Glyco_trans_1_3: Glyc 98.3 5.6E-06 1.2E-10 74.2 10.7 116 15-154 2-124 (318)
29 TIGR00661 MJ1255 conserved hyp 98.0 3.2E-05 7E-10 69.7 10.2 115 18-154 5-123 (321)
30 PF00201 UDPGT: UDP-glucoronos 98.0 2.1E-05 4.6E-10 75.1 8.4 35 15-50 2-36 (500)
31 PRK12446 undecaprenyldiphospho 97.6 0.0018 3.9E-08 59.3 14.0 123 15-159 3-129 (352)
32 cd03785 GT1_MurG MurG is an N- 97.1 0.0092 2E-07 53.9 12.8 116 15-150 1-118 (350)
33 COG0707 MurG UDP-N-acetylgluco 97.1 0.015 3.2E-07 53.4 13.3 122 15-158 2-128 (357)
34 TIGR01133 murG undecaprenyldip 96.8 0.032 6.9E-07 50.2 13.0 116 15-150 2-119 (348)
35 PRK00726 murG undecaprenyldiph 96.8 0.036 7.8E-07 50.3 13.4 117 14-150 2-120 (357)
36 TIGR00215 lpxB lipid-A-disacch 96.3 0.021 4.5E-07 53.0 8.8 111 14-150 6-119 (385)
37 cd03816 GT1_ALG1_like This fam 95.8 0.22 4.7E-06 46.6 13.0 121 13-151 3-128 (415)
38 cd03818 GT1_ExpC_like This fam 95.7 0.32 6.9E-06 44.9 13.7 99 30-151 13-116 (396)
39 PRK00025 lpxB lipid-A-disaccha 95.4 0.13 2.9E-06 47.0 10.0 113 14-152 2-117 (380)
40 TIGR03590 PseG pseudaminic aci 95.2 0.25 5.5E-06 43.6 10.7 32 22-53 12-43 (279)
41 COG4671 Predicted glycosyl tra 94.8 0.23 4.9E-06 45.0 9.2 107 10-134 6-117 (400)
42 PF13579 Glyco_trans_4_4: Glyc 94.2 0.049 1.1E-06 42.5 3.4 93 30-151 7-103 (160)
43 cd03823 GT1_ExpE7_like This fa 94.2 1 2.2E-05 39.7 12.3 109 24-151 15-127 (359)
44 cd03800 GT1_Sucrose_synthase T 94.1 0.45 9.7E-06 43.2 10.0 106 24-150 21-130 (398)
45 cd03794 GT1_wbuB_like This fam 93.6 1.1 2.4E-05 39.7 11.4 29 24-52 14-42 (394)
46 PLN02871 UDP-sulfoquinovose:DA 93.4 0.43 9.3E-06 45.2 8.7 41 11-51 56-101 (465)
47 PF13477 Glyco_trans_4_2: Glyc 93.4 1.2 2.5E-05 34.3 9.8 99 16-149 2-104 (139)
48 cd03814 GT1_like_2 This family 93.2 0.31 6.7E-06 43.3 7.1 29 24-52 14-42 (364)
49 cd04962 GT1_like_5 This family 92.6 2 4.4E-05 38.6 11.6 37 15-51 2-39 (371)
50 cd03817 GT1_UGDG_like This fam 92.5 1.1 2.5E-05 39.5 9.8 33 20-52 10-42 (374)
51 PRK10307 putative glycosyl tra 92.3 2.2 4.7E-05 39.5 11.7 22 30-51 21-42 (412)
52 cd03808 GT1_cap1E_like This fa 91.5 2.2 4.7E-05 37.3 10.3 107 16-151 2-110 (359)
53 cd03805 GT1_ALG2_like This fam 89.6 7.6 0.00016 35.2 12.4 36 15-50 2-39 (392)
54 cd03796 GT1_PIG-A_like This fa 88.2 4.8 0.0001 37.1 10.1 101 25-150 15-119 (398)
55 cd03819 GT1_WavL_like This fam 88.0 5.2 0.00011 35.5 10.0 99 24-153 10-110 (355)
56 PF04007 DUF354: Protein of un 87.5 9.8 0.00021 34.6 11.4 113 26-165 12-124 (335)
57 TIGR02472 sucr_P_syn_N sucrose 87.3 7.2 0.00016 36.6 10.9 109 27-151 29-144 (439)
58 PRK02261 methylaspartate mutas 84.7 3 6.5E-05 32.8 5.8 48 11-58 1-48 (137)
59 cd03802 GT1_AviGT4_like This f 84.4 11 0.00024 33.0 10.2 27 25-51 20-46 (335)
60 TIGR02468 sucrsPsyn_pln sucros 84.2 15 0.00033 38.5 11.9 42 10-51 166-224 (1050)
61 TIGR02470 sucr_synth sucrose s 84.2 27 0.00059 35.6 13.5 124 14-149 256-413 (784)
62 PLN00142 sucrose synthase 83.7 9.6 0.00021 38.9 10.1 30 122-151 407-438 (815)
63 PF12000 Glyco_trans_4_3: Gkyc 82.8 23 0.0005 28.9 10.4 42 111-152 53-96 (171)
64 COG3980 spsG Spore coat polysa 82.8 1.5 3.2E-05 38.8 3.5 40 15-54 2-45 (318)
65 cd03795 GT1_like_4 This family 82.8 20 0.00044 31.6 11.2 30 23-52 13-42 (357)
66 PLN02275 transferase, transfer 82.4 39 0.00085 30.8 14.4 39 11-51 4-43 (371)
67 PRK05749 3-deoxy-D-manno-octul 82.0 9.8 0.00021 35.4 9.2 100 15-151 51-154 (425)
68 TIGR03449 mycothiol_MshA UDP-N 81.3 20 0.00044 32.7 10.9 29 23-51 19-47 (405)
69 cd03801 GT1_YqgM_like This fam 80.5 18 0.00039 31.4 9.9 102 24-153 14-117 (374)
70 PRK13609 diacylglycerol glucos 80.1 2.7 5.8E-05 38.5 4.6 39 11-49 2-41 (380)
71 cd04955 GT1_like_6 This family 80.1 22 0.00049 31.4 10.6 29 24-52 15-43 (363)
72 cd03820 GT1_amsD_like This fam 79.7 13 0.00029 32.1 8.8 29 24-52 13-41 (348)
73 cd02067 B12-binding B12 bindin 78.8 4.7 0.0001 30.4 4.9 43 15-57 1-43 (119)
74 PF13439 Glyco_transf_4: Glyco 78.8 2.2 4.8E-05 33.4 3.2 27 25-51 13-39 (177)
75 cd03798 GT1_wlbH_like This fam 75.1 37 0.0008 29.5 10.4 30 23-52 13-42 (377)
76 cd03812 GT1_CapH_like This fam 75.0 16 0.00035 32.4 8.1 31 22-52 10-40 (358)
77 cd00532 MGS-like MGS-like doma 73.9 21 0.00047 26.6 7.3 29 28-58 12-40 (112)
78 cd01424 MGS_CPS_II Methylglyox 69.1 33 0.00072 25.3 7.4 82 26-148 11-99 (110)
79 cd03807 GT1_WbnK_like This fam 68.2 57 0.0012 28.3 9.9 32 21-52 9-40 (365)
80 cd03821 GT1_Bme6_like This fam 66.8 9.4 0.0002 33.5 4.6 30 23-52 13-42 (375)
81 COG1066 Sms Predicted ATP-depe 66.2 6 0.00013 36.9 3.2 42 15-57 95-136 (456)
82 COG0496 SurE Predicted acid ph 65.9 31 0.00068 30.0 7.3 98 30-153 16-126 (252)
83 TIGR00715 precor6x_red precorr 65.8 55 0.0012 28.6 9.0 23 30-52 12-34 (256)
84 TIGR03088 stp2 sugar transfera 64.6 96 0.0021 27.8 10.9 103 15-149 3-108 (374)
85 cd02070 corrinoid_protein_B12- 64.4 18 0.0004 30.1 5.6 47 12-58 81-127 (201)
86 cd03806 GT1_ALG11_like This fa 63.5 95 0.002 28.9 10.8 109 28-151 18-136 (419)
87 TIGR02370 pyl_corrinoid methyl 63.1 21 0.00046 29.7 5.7 48 12-59 83-130 (197)
88 PF02310 B12-binding: B12 bind 62.0 19 0.00041 26.8 4.9 43 15-57 2-44 (121)
89 TIGR03087 stp1 sugar transfera 61.4 5.7 0.00012 36.5 2.2 33 19-52 8-41 (397)
90 cd03825 GT1_wcfI_like This fam 60.3 14 0.00029 32.8 4.4 38 15-52 2-41 (365)
91 COG1435 Tdk Thymidine kinase [ 59.2 86 0.0019 26.3 8.4 36 17-52 8-43 (201)
92 PRK06321 replicative DNA helic 58.7 1.4E+02 0.0031 28.6 11.1 43 15-57 228-271 (472)
93 cd04951 GT1_WbdM_like This fam 58.2 11 0.00024 33.3 3.5 28 23-50 11-38 (360)
94 cd02069 methionine_synthase_B1 56.9 31 0.00067 29.2 5.7 48 12-59 87-134 (213)
95 cd02071 MM_CoA_mut_B12_BD meth 56.5 27 0.00059 26.5 4.9 42 15-56 1-42 (122)
96 cd01635 Glycosyltransferase_GT 56.2 18 0.00038 29.3 4.1 26 23-48 12-37 (229)
97 COG1484 DnaC DNA replication p 55.8 15 0.00032 32.0 3.7 46 13-58 105-150 (254)
98 PRK09165 replicative DNA helic 55.5 1.2E+02 0.0026 29.2 10.2 44 15-58 219-277 (497)
99 TIGR02655 circ_KaiC circadian 55.0 76 0.0016 30.4 8.7 45 14-58 264-308 (484)
100 PLN02846 digalactosyldiacylgly 54.8 20 0.00044 34.2 4.7 40 11-50 2-46 (462)
101 COG1519 KdtA 3-deoxy-D-manno-o 51.6 1.8E+02 0.0038 27.4 10.1 99 15-152 50-154 (419)
102 PRK07773 replicative DNA helic 51.5 1.6E+02 0.0035 30.6 10.9 43 15-57 219-262 (886)
103 cd01018 ZntC Metal binding pro 51.1 51 0.0011 28.7 6.4 45 117-161 211-257 (266)
104 PRK13931 stationary phase surv 50.7 1E+02 0.0023 27.0 8.1 31 122-152 86-129 (261)
105 PF04244 DPRP: Deoxyribodipyri 50.5 16 0.00035 31.2 3.0 26 26-51 47-72 (224)
106 PF04413 Glycos_transf_N: 3-De 50.2 82 0.0018 25.9 7.1 99 15-151 22-125 (186)
107 PRK00654 glgA glycogen synthas 49.3 26 0.00056 33.2 4.5 31 20-50 12-43 (466)
108 cd03811 GT1_WabH_like This fam 49.1 31 0.00068 29.7 4.8 31 22-52 10-40 (353)
109 PF06925 MGDG_synth: Monogalac 49.0 53 0.0012 26.3 5.8 44 110-153 76-125 (169)
110 TIGR03877 thermo_KaiC_1 KaiC d 48.1 1.3E+02 0.0028 25.6 8.3 44 14-57 22-65 (237)
111 PF10657 RC-P840_PscD: Photosy 48.0 30 0.00064 26.5 3.7 47 5-51 38-84 (144)
112 PF07894 DUF1669: Protein of u 47.5 32 0.00068 30.5 4.4 44 110-153 134-183 (284)
113 PF02441 Flavoprotein: Flavopr 47.4 26 0.00057 26.8 3.5 41 15-56 2-42 (129)
114 PF09314 DUF1972: Domain of un 46.7 35 0.00076 28.3 4.3 24 30-53 23-46 (185)
115 KOG2941 Beta-1,4-mannosyltrans 46.5 2.4E+02 0.0053 26.1 11.3 59 11-78 10-70 (444)
116 PF00201 UDPGT: UDP-glucoronos 46.3 1.6 3.5E-05 41.6 -4.3 12 245-256 246-257 (500)
117 cd01981 Pchlide_reductase_B Pc 46.3 35 0.00076 32.0 4.9 34 115-151 362-395 (430)
118 cd01452 VWA_26S_proteasome_sub 46.1 1.3E+02 0.0029 24.9 7.7 61 15-77 110-173 (187)
119 TIGR03492 conserved hypothetic 46.1 1.8E+02 0.0039 26.9 9.5 33 119-152 87-121 (396)
120 PRK04328 hypothetical protein; 45.9 1.9E+02 0.0042 24.8 10.4 44 14-57 24-67 (249)
121 COG2185 Sbm Methylmalonyl-CoA 45.7 52 0.0011 26.1 4.9 42 11-52 10-51 (143)
122 TIGR02853 spore_dpaA dipicolin 45.4 80 0.0017 28.0 6.8 20 31-50 14-33 (287)
123 cd03792 GT1_Trehalose_phosphor 45.1 2.1E+02 0.0045 25.8 9.7 29 22-50 10-38 (372)
124 PF02603 Hpr_kinase_N: HPr Ser 44.0 27 0.00058 26.9 3.1 42 111-152 70-113 (127)
125 TIGR00236 wecB UDP-N-acetylglu 43.8 49 0.0011 29.9 5.3 106 21-150 7-116 (365)
126 PF02571 CbiJ: Precorrin-6x re 43.3 47 0.001 28.8 4.8 36 115-151 58-100 (249)
127 COG0162 TyrS Tyrosyl-tRNA synt 42.8 23 0.0005 33.1 2.9 25 25-50 49-73 (401)
128 COG1703 ArgK Putative periplas 42.2 52 0.0011 29.6 4.9 42 11-52 48-90 (323)
129 TIGR00679 hpr-ser Hpr(Ser) kin 41.9 1.1E+02 0.0024 27.5 7.0 46 111-156 71-118 (304)
130 PRK01021 lpxB lipid-A-disaccha 41.6 58 0.0013 32.2 5.6 42 113-154 300-346 (608)
131 PF12146 Hydrolase_4: Putative 41.2 51 0.0011 23.0 3.9 34 14-47 16-49 (79)
132 PF04127 DFP: DNA / pantothena 41.0 28 0.00061 28.8 3.0 21 31-51 33-53 (185)
133 cd03791 GT1_Glycogen_synthase_ 40.7 23 0.00049 33.4 2.7 22 29-50 21-42 (476)
134 PRK14089 ipid-A-disaccharide s 40.4 1E+02 0.0022 28.2 6.8 33 122-154 75-112 (347)
135 PLN02316 synthase/transferase 40.0 78 0.0017 33.4 6.5 45 7-51 581-631 (1036)
136 COG0299 PurN Folate-dependent 39.4 41 0.00089 28.1 3.6 31 123-153 29-59 (200)
137 COG0467 RAD55 RecA-superfamily 39.2 65 0.0014 27.8 5.2 45 14-58 24-68 (260)
138 PRK08057 cobalt-precorrin-6x r 39.0 71 0.0015 27.7 5.3 37 114-151 56-99 (248)
139 PF00070 Pyr_redox: Pyridine n 38.7 46 0.001 22.8 3.4 23 29-51 10-32 (80)
140 PF08323 Glyco_transf_5: Starc 38.2 25 0.00053 30.3 2.3 23 29-51 21-43 (245)
141 CHL00076 chlB photochlorophyll 37.9 59 0.0013 31.5 5.0 35 114-151 365-399 (513)
142 PF08660 Alg14: Oligosaccharid 37.9 2.2E+02 0.0047 23.1 8.2 32 21-52 5-38 (170)
143 PRK08305 spoVFB dipicolinate s 37.4 47 0.001 27.8 3.7 40 13-53 5-45 (196)
144 PF13450 NAD_binding_8: NAD(P) 37.1 43 0.00093 22.5 2.9 18 31-48 9-26 (68)
145 COG0052 RpsB Ribosomal protein 36.6 2.9E+02 0.0063 24.1 8.8 31 124-154 157-189 (252)
146 PRK03359 putative electron tra 36.0 87 0.0019 27.4 5.3 35 119-153 108-148 (256)
147 TIGR01278 DPOR_BchB light-inde 35.7 58 0.0013 31.4 4.6 34 114-150 355-388 (511)
148 PF01555 N6_N4_Mtase: DNA meth 35.6 66 0.0014 26.5 4.5 42 113-154 179-223 (231)
149 cd02065 B12-binding_like B12 b 35.5 95 0.0021 23.0 5.0 42 15-56 1-42 (125)
150 PRK02910 light-independent pro 34.4 66 0.0014 31.1 4.8 34 114-150 353-386 (519)
151 PRK14478 nitrogenase molybdenu 34.0 55 0.0012 31.3 4.1 30 116-148 386-415 (475)
152 PF07355 GRDB: Glycine/sarcosi 34.0 1.1E+02 0.0024 28.0 5.7 41 110-150 67-117 (349)
153 TIGR03880 KaiC_arch_3 KaiC dom 34.0 2.8E+02 0.006 23.1 10.7 44 15-58 18-61 (224)
154 cd01141 TroA_d Periplasmic bin 33.8 78 0.0017 25.5 4.6 39 112-151 59-99 (186)
155 PF03720 UDPG_MGDP_dh_C: UDP-g 33.6 52 0.0011 24.2 3.2 25 28-52 17-41 (106)
156 COG2099 CobK Precorrin-6x redu 33.6 90 0.002 27.3 4.9 37 113-150 56-99 (257)
157 PF03808 Glyco_tran_WecB: Glyc 33.3 2.6E+02 0.0056 22.5 8.8 94 30-154 37-135 (172)
158 cd00861 ProRS_anticodon_short 32.8 84 0.0018 22.0 4.1 35 14-48 2-38 (94)
159 COG2109 BtuR ATP:corrinoid ade 32.7 3E+02 0.0064 23.1 10.6 37 11-47 26-62 (198)
160 cd03799 GT1_amsK_like This is 32.3 89 0.0019 27.4 5.0 26 26-51 13-38 (355)
161 TIGR02095 glgA glycogen/starch 32.2 38 0.00082 32.0 2.7 24 28-51 21-44 (473)
162 PF08026 Antimicrobial_5: Bee 32.1 7 0.00015 22.8 -1.4 20 19-38 16-35 (39)
163 PRK05428 HPr kinase/phosphoryl 32.0 2E+02 0.0044 25.9 7.1 46 110-155 70-117 (308)
164 cd02034 CooC The accessory pro 31.9 1.1E+02 0.0024 23.0 4.7 37 15-51 1-37 (116)
165 PF08897 DUF1841: Domain of un 31.6 34 0.00073 26.9 1.8 18 21-38 56-73 (137)
166 cd03466 Nitrogenase_NifN_2 Nit 31.5 83 0.0018 29.6 4.9 35 113-150 362-396 (429)
167 PLN02605 monogalactosyldiacylg 31.5 1.1E+02 0.0023 28.0 5.6 32 17-48 3-37 (382)
168 PF01380 SIS: SIS domain SIS d 31.4 90 0.002 23.2 4.3 32 21-52 60-91 (131)
169 TIGR01285 nifN nitrogenase mol 31.4 74 0.0016 30.0 4.5 19 29-47 182-200 (432)
170 PRK12342 hypothetical protein; 30.8 1.1E+02 0.0023 26.8 5.0 35 119-153 105-145 (254)
171 PRK13608 diacylglycerol glucos 30.7 74 0.0016 29.3 4.3 34 14-47 6-43 (391)
172 PTZ00445 p36-lilke protein; Pr 30.6 53 0.0012 27.9 3.0 29 24-52 73-102 (219)
173 COG2874 FlaH Predicted ATPases 30.5 2.9E+02 0.0062 23.7 7.3 35 20-54 35-69 (235)
174 cd03115 SRP The signal recogni 30.4 1.3E+02 0.0027 23.9 5.2 38 16-53 3-40 (173)
175 PRK14491 putative bifunctional 29.6 1.1E+02 0.0024 30.2 5.5 44 6-49 2-46 (597)
176 PRK13609 diacylglycerol glucos 29.4 79 0.0017 28.7 4.3 39 113-151 94-134 (380)
177 COG4081 Uncharacterized protei 29.4 54 0.0012 25.5 2.6 35 16-50 6-41 (148)
178 PRK04940 hypothetical protein; 29.3 1.3E+02 0.0028 24.8 5.0 33 123-155 60-93 (180)
179 TIGR03568 NeuC_NnaA UDP-N-acet 29.2 1.2E+02 0.0026 27.8 5.4 43 110-152 80-125 (365)
180 TIGR00234 tyrS tyrosyl-tRNA sy 29.2 45 0.00098 30.9 2.6 24 25-49 47-70 (377)
181 cd01965 Nitrogenase_MoFe_beta_ 29.1 89 0.0019 29.3 4.6 34 114-150 362-395 (428)
182 PF10588 NADH-G_4Fe-4S_3: NADH 29.1 24 0.00053 21.4 0.6 35 114-148 4-39 (41)
183 PF01975 SurE: Survival protei 28.9 53 0.0011 27.4 2.7 27 30-56 16-42 (196)
184 cd00860 ThrRS_anticodon ThrRS 28.8 1.2E+02 0.0026 20.9 4.3 33 15-48 3-35 (91)
185 TIGR00064 ftsY signal recognit 28.5 1.4E+02 0.003 26.3 5.4 39 14-52 73-111 (272)
186 PRK09620 hypothetical protein; 28.0 58 0.0013 27.8 2.9 26 23-50 27-52 (229)
187 cd03822 GT1_ecORF704_like This 27.9 85 0.0018 27.4 4.1 28 24-51 13-40 (366)
188 COG1817 Uncharacterized protei 27.8 4.7E+02 0.01 23.8 10.7 103 26-155 12-115 (346)
189 PF06506 PrpR_N: Propionate ca 27.8 96 0.0021 25.1 4.1 38 113-153 112-152 (176)
190 PRK00771 signal recognition pa 27.7 1.5E+02 0.0032 28.2 5.7 41 13-53 95-135 (437)
191 PF05728 UPF0227: Uncharacteri 27.7 1.3E+02 0.0028 24.8 4.9 43 115-157 49-94 (187)
192 PF02951 GSH-S_N: Prokaryotic 27.7 90 0.002 23.8 3.6 24 28-51 18-41 (119)
193 PRK06849 hypothetical protein; 27.6 1.4E+02 0.003 27.4 5.6 36 12-51 3-38 (389)
194 smart00851 MGS MGS-like domain 27.4 64 0.0014 22.8 2.6 27 30-58 2-28 (90)
195 PRK05973 replicative DNA helic 26.9 1.3E+02 0.0028 26.0 4.8 44 15-58 66-109 (237)
196 PF02142 MGS: MGS-like domain 26.9 59 0.0013 23.4 2.4 27 30-58 2-28 (95)
197 TIGR01675 plant-AP plant acid 26.6 75 0.0016 27.3 3.3 26 27-52 122-147 (229)
198 COG4088 Predicted nucleotide k 26.6 82 0.0018 27.0 3.4 34 15-48 3-36 (261)
199 COG1255 Uncharacterized protei 26.6 72 0.0016 24.4 2.8 19 30-48 25-43 (129)
200 cd01017 AdcA Metal binding pro 26.4 1.4E+02 0.0031 26.1 5.2 33 119-151 216-250 (282)
201 PRK06732 phosphopantothenate-- 26.1 65 0.0014 27.5 2.9 30 18-49 19-48 (229)
202 cd02033 BchX Chlorophyllide re 26.1 1.8E+02 0.0038 26.5 5.8 37 14-50 32-68 (329)
203 PF00448 SRP54: SRP54-type pro 26.1 1.2E+02 0.0027 25.1 4.5 39 15-53 3-41 (196)
204 TIGR01286 nifK nitrogenase mol 26.0 1.1E+02 0.0023 29.7 4.6 33 13-48 220-254 (515)
205 cd01976 Nitrogenase_MoFe_alpha 26.0 97 0.0021 29.1 4.2 34 114-150 360-393 (421)
206 COG3433 Aryl carrier domain [S 25.9 29 0.00063 24.0 0.5 22 28-49 32-53 (74)
207 PF00391 PEP-utilizers: PEP-ut 25.8 94 0.002 21.6 3.2 30 122-151 29-60 (80)
208 cd01983 Fer4_NifH The Fer4_Nif 25.5 1.8E+02 0.0039 19.7 4.8 33 16-48 2-34 (99)
209 PF13378 MR_MLE_C: Enolase C-t 25.4 1.6E+02 0.0035 21.4 4.7 54 113-166 8-68 (111)
210 PF01297 TroA: Periplasmic sol 25.4 1.3E+02 0.0029 25.7 4.8 37 117-153 193-231 (256)
211 PRK00039 ruvC Holliday junctio 25.4 2.2E+02 0.0048 22.9 5.7 45 109-153 47-106 (164)
212 PF12695 Abhydrolase_5: Alpha/ 25.4 1.8E+02 0.004 21.5 5.2 29 22-50 7-35 (145)
213 cd01124 KaiC KaiC is a circadi 25.2 1.9E+02 0.004 23.0 5.4 42 16-57 2-43 (187)
214 TIGR01917 gly_red_sel_B glycin 25.1 1.9E+02 0.0041 27.3 5.7 41 110-150 63-113 (431)
215 TIGR01283 nifE nitrogenase mol 25.1 1.1E+02 0.0024 29.0 4.5 33 115-150 387-419 (456)
216 TIGR01918 various_sel_PB selen 25.0 1.9E+02 0.0041 27.3 5.8 41 110-150 63-113 (431)
217 TIGR01425 SRP54_euk signal rec 24.9 1.6E+02 0.0035 27.9 5.4 40 14-53 101-140 (429)
218 COG3150 Predicted esterase [Ge 24.9 1.1E+02 0.0024 25.2 3.7 42 113-154 47-91 (191)
219 KOG1838 Alpha/beta hydrolase [ 24.8 2.4E+02 0.0051 26.6 6.4 42 10-51 122-164 (409)
220 COG0313 Predicted methyltransf 24.5 2E+02 0.0044 25.4 5.6 48 115-162 70-124 (275)
221 PRK09361 radB DNA repair and r 24.4 1.6E+02 0.0035 24.5 5.0 36 15-50 25-60 (225)
222 cd01974 Nitrogenase_MoFe_beta 24.3 1.4E+02 0.003 28.1 5.0 18 30-47 176-193 (435)
223 PF00289 CPSase_L_chain: Carba 24.1 62 0.0013 24.2 2.1 28 20-49 78-105 (110)
224 PRK07313 phosphopantothenoylcy 24.1 82 0.0018 25.9 3.0 39 15-54 3-41 (182)
225 PF02350 Epimerase_2: UDP-N-ac 24.0 84 0.0018 28.6 3.4 44 110-153 54-100 (346)
226 cd01715 ETF_alpha The electron 23.9 2.1E+02 0.0045 22.8 5.3 40 114-153 74-116 (168)
227 cd03786 GT1_UDP-GlcNAc_2-Epime 23.8 1.1E+02 0.0024 27.3 4.1 38 114-151 79-119 (363)
228 COG2099 CobK Precorrin-6x redu 23.5 1.5E+02 0.0033 25.9 4.5 34 117-150 190-228 (257)
229 PF01497 Peripla_BP_2: Peripla 23.5 1E+02 0.0022 25.6 3.7 40 114-154 52-93 (238)
230 TIGR01862 N2-ase-Ialpha nitrog 23.5 99 0.0022 29.2 3.8 29 119-150 383-411 (443)
231 PRK06222 ferredoxin-NADP(+) re 23.5 1.1E+02 0.0023 26.9 3.8 39 14-54 99-137 (281)
232 PF01316 Arg_repressor: Argini 23.2 51 0.0011 22.6 1.4 22 31-52 23-44 (70)
233 PF03853 YjeF_N: YjeF-related 23.2 87 0.0019 25.2 3.0 35 12-48 24-59 (169)
234 KOG3062 RNA polymerase II elon 23.2 1.5E+02 0.0033 25.7 4.4 30 14-43 2-31 (281)
235 PF10087 DUF2325: Uncharacteri 23.2 1.4E+02 0.003 21.5 3.8 36 123-158 48-89 (97)
236 cd01968 Nitrogenase_NifE_I Nit 23.1 1.1E+02 0.0025 28.4 4.1 29 117-148 350-378 (410)
237 cd01916 ACS_1 Acetyl-CoA synth 22.8 1.2E+02 0.0026 30.8 4.4 36 119-154 261-298 (731)
238 PF01738 DLH: Dienelactone hyd 22.6 1.8E+02 0.0038 24.0 4.9 33 15-47 15-47 (218)
239 cd01147 HemV-2 Metal binding p 22.4 1.6E+02 0.0034 25.0 4.7 39 114-153 66-107 (262)
240 PRK10422 lipopolysaccharide co 22.4 1.4E+02 0.003 26.9 4.5 45 12-56 4-50 (352)
241 PF03796 DnaB_C: DnaB-like hel 22.4 1.9E+02 0.004 24.8 5.1 42 16-57 22-64 (259)
242 cd01980 Chlide_reductase_Y Chl 22.3 1.5E+02 0.0033 27.7 4.8 30 119-151 346-375 (416)
243 PF09001 DUF1890: Domain of un 22.1 63 0.0014 25.4 1.8 27 30-56 16-42 (139)
244 COG2085 Predicted dinucleotide 22.0 93 0.002 26.4 2.9 28 23-52 8-35 (211)
245 PRK06249 2-dehydropantoate 2-r 21.9 1.1E+02 0.0024 27.2 3.7 36 11-51 3-38 (313)
246 PF01591 6PF2K: 6-phosphofruct 21.9 1.7E+02 0.0037 24.9 4.6 47 8-54 7-53 (222)
247 COG1493 HprK Serine kinase of 21.9 3E+02 0.0065 24.8 6.1 55 111-165 70-127 (308)
248 PRK00881 purH bifunctional pho 21.7 3.1E+02 0.0067 26.6 6.7 29 28-58 15-43 (513)
249 PRK13604 luxD acyl transferase 21.7 2E+02 0.0044 25.9 5.2 33 15-47 38-70 (307)
250 PLN02891 IMP cyclohydrolase 21.4 2.5E+02 0.0055 27.3 6.0 29 28-58 33-61 (547)
251 PRK14974 cell division protein 21.1 2.3E+02 0.0051 25.8 5.6 40 13-52 140-179 (336)
252 TIGR00421 ubiX_pad polyprenyl 21.1 1.1E+02 0.0024 25.1 3.2 26 31-56 16-41 (181)
253 PF13167 GTP-bdg_N: GTP-bindin 21.1 2.4E+02 0.0051 20.6 4.6 35 114-148 48-84 (95)
254 PF07801 DUF1647: Protein of u 21.0 3.4E+02 0.0074 21.4 5.8 63 11-78 57-121 (142)
255 PRK10867 signal recognition pa 20.8 2.1E+02 0.0046 27.1 5.4 41 14-54 101-142 (433)
256 cd02032 Bchl_like This family 20.8 1.8E+02 0.0039 25.0 4.7 33 16-48 3-35 (267)
257 cd01122 GP4d_helicase GP4d_hel 20.7 2E+02 0.0043 24.7 5.0 43 15-57 32-75 (271)
258 COG2910 Putative NADH-flavin r 20.7 91 0.002 26.1 2.5 24 23-48 8-31 (211)
259 TIGR01680 Veg_Stor_Prot vegeta 20.7 1.2E+02 0.0025 26.9 3.4 27 26-52 146-172 (275)
260 TIGR02852 spore_dpaB dipicolin 20.5 1.1E+02 0.0024 25.3 3.1 38 15-52 2-39 (187)
261 TIGR01284 alt_nitrog_alph nitr 20.5 1.1E+02 0.0023 29.2 3.4 33 115-150 387-419 (457)
262 COG0300 DltE Short-chain dehyd 20.4 97 0.0021 27.3 2.9 26 30-57 19-44 (265)
263 cd02037 MRP-like MRP (Multiple 20.4 1.4E+02 0.0029 23.7 3.6 32 19-50 6-37 (169)
264 PRK14106 murD UDP-N-acetylmura 20.4 1.7E+02 0.0037 27.4 4.7 33 13-50 5-37 (450)
265 PRK15411 rcsA colanic acid cap 20.1 2.5E+02 0.0055 23.2 5.3 35 119-153 43-86 (207)
266 PRK05986 cob(I)alamin adenolsy 20.1 2.8E+02 0.006 23.1 5.4 37 12-48 21-57 (191)
267 PF01210 NAD_Gly3P_dh_N: NAD-d 20.0 1E+02 0.0022 24.3 2.8 21 31-51 12-32 (157)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=6.3e-46 Score=348.98 Aligned_cols=245 Identities=44% Similarity=0.778 Sum_probs=186.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCE 90 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~ 90 (279)
.++.|||++|||+|||+|||++|||+|++||+.|||++|+.|+.++.+.+..... .+..|+|+.+|+|..++++|++.+
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~-~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARE-SGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccc-cCCCeEEEEcCCCCccCCCCCCcc
Confidence 4557999999999999999999999999999999999999998777654322110 112499999998865468998866
Q ss_pred CCCCCCCcchHHHHHHHHHHhHHHHHHHHHh--cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHHhcC
Q 044094 91 NLDAIPSRDLSYNFSKAIMMLHPQADDLVRQ--CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQHK 168 (279)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~ 168 (279)
..++.+...+...+..++..+.+.+++++++ .+++|||+|+|++|+.+||+++|||+++|||++|+++++++++....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 164 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN 164 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc
Confidence 5443332233445556666788999999886 46899999999999999999999999999999999999887765433
Q ss_pred CCCCCCCCCCccccCCCCCCcccCCCCCCCCcCCCCcHHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHHhcCCceE
Q 044094 169 PNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEKVTGKVVY 248 (279)
Q Consensus 169 ~~~~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~v~ 248 (279)
+.....++...+.+||+|+.+.++.+|||+++.....+..++..+.+..++++|||+|||+|||+++++++++..+++||
T Consensus 165 ~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~~~v~ 244 (491)
T PLN02534 165 AHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIKKKVW 244 (491)
T ss_pred ccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcCCcEE
Confidence 32222233345678999865568999999865432233344433333345689999999999999999999887778999
Q ss_pred EeccccCC
Q 044094 249 PVGPVSLF 256 (279)
Q Consensus 249 ~VGPl~~~ 256 (279)
+||||++.
T Consensus 245 ~VGPL~~~ 252 (491)
T PLN02534 245 CVGPVSLC 252 (491)
T ss_pred EECccccc
Confidence 99999764
No 2
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.9e-45 Score=343.00 Aligned_cols=242 Identities=29% Similarity=0.491 Sum_probs=186.1
Q ss_pred CCCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCC
Q 044094 6 TKTHDHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANL 85 (279)
Q Consensus 6 ~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~l 85 (279)
+-.+...++|||++|||+|||+|||++|||+|+++|++|||++|+.|++++.+.... .+.|+++.+|+|.. +++
T Consensus 2 ~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~-----~~~i~~~~lp~P~~-~~l 75 (477)
T PLN02863 2 TELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSK-----HPSIETLVLPFPSH-PSI 75 (477)
T ss_pred cccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhccc-----CCCeeEEeCCCCCc-CCC
Confidence 344567789999999999999999999999999999999999999998877653221 13489999988754 589
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHh--cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHH
Q 044094 86 PPNCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQ--CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVA 163 (279)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~ 163 (279)
|+|.++.++++. +....+..+...+.+.+++++++ .+++|||+|+|++|+.+||+++|||+++|||++|++++++++
T Consensus 76 PdG~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~ 154 (477)
T PLN02863 76 PSGVENVKDLPP-SGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYS 154 (477)
T ss_pred CCCCcChhhcch-hhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHH
Confidence 998865544332 23334556666778888888876 467999999999999999999999999999999999999999
Q ss_pred HHhcCCCCC-CCCCCCcc---ccCCCCCCcccCCCCCCCCcCCC---CcHHHHHHHHHHHHhccCEEEEcccccchHHHH
Q 044094 164 AAQHKPNVN-VSSDTETF---LVPGLPRPVYITQSQMPDQFFGN---TDLQEFFEKLIKAERNSYGVVANTFFEIEPDYI 236 (279)
Q Consensus 164 ~~~~~~~~~-~~~~~~~~---~iPglp~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 236 (279)
++...+... ..++.+.+ .+||+|. ++.+|+|.+++.. +....++.+..+...+++|||+|||+|||++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 231 (477)
T PLN02863 155 LWREMPTKINPDDQNEILSFSKIPNCPK---YPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYL 231 (477)
T ss_pred HhhcccccccccccccccccCCCCCCCC---cChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHH
Confidence 875322211 11111222 4788876 8999999877532 123334444444557889999999999999999
Q ss_pred HHHHHhcC-CceEEeccccCCC
Q 044094 237 KHYEKVTG-KVVYPVGPVSLFN 257 (279)
Q Consensus 237 ~~l~~~~~-~~v~~VGPl~~~~ 257 (279)
+++++.++ ++||+||||++..
T Consensus 232 ~~~~~~~~~~~v~~IGPL~~~~ 253 (477)
T PLN02863 232 EHLKKELGHDRVWAVGPILPLS 253 (477)
T ss_pred HHHHhhcCCCCeEEeCCCcccc
Confidence 99988765 6899999998653
No 3
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=6e-43 Score=327.37 Aligned_cols=240 Identities=23% Similarity=0.367 Sum_probs=176.9
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNC 89 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~ 89 (279)
+..++|||++|||+|||+|||++|||+|++||++|||++|+.|+.++.+.... ....|+++.+|+|.. +|+|++.
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~----~~~~i~~~~lp~p~~-dglp~~~ 77 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ----LSSSITLVSFPLPSV-PGLPSSA 77 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc----CCCCeeEEECCCCcc-CCCCCCc
Confidence 45567999999999999999999999999999999999999998776532111 112499999998754 5888775
Q ss_pred CCCCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHHhcCC
Q 044094 90 ENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQHKP 169 (279)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~ 169 (279)
+...+.+. .....+..+.+.+.+.+++++++.+++|||+|.|++|+.+||+++|||+++||++++++++++++...+..
T Consensus 78 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~ 156 (472)
T PLN02670 78 ESSTDVPY-TKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLME 156 (472)
T ss_pred ccccccch-hhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhh
Confidence 54332221 11123344556789999999988889999999999999999999999999999999999999876643321
Q ss_pred CCCCCCCCCcc-ccCCCCC---CcccCCCCCCCCcCCCC---c-HHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHH
Q 044094 170 NVNVSSDTETF-LVPGLPR---PVYITQSQMPDQFFGNT---D-LQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEK 241 (279)
Q Consensus 170 ~~~~~~~~~~~-~iPglp~---~~~l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 241 (279)
.+...+..+.. .+||+++ .+.++.+|+|+++.... . +..++ +......+++|||+|||+|||+++++++++
T Consensus 157 ~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~-~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~ 235 (472)
T PLN02670 157 GGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSV-RFGFAIGGSDVVIIRSSPEFEPEWFDLLSD 235 (472)
T ss_pred cccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHH-HHHhhcccCCEEEEeCHHHHhHHHHHHHHH
Confidence 22222212222 3666532 12367789998774321 1 22333 344456789999999999999999999988
Q ss_pred hcCCceEEeccccCC
Q 044094 242 VTGKVVYPVGPVSLF 256 (279)
Q Consensus 242 ~~~~~v~~VGPl~~~ 256 (279)
..++++|+||||++.
T Consensus 236 ~~~~~v~~VGPl~~~ 250 (472)
T PLN02670 236 LYRKPIIPIGFLPPV 250 (472)
T ss_pred hhCCCeEEEecCCcc
Confidence 666799999999764
No 4
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.4e-41 Score=315.14 Aligned_cols=216 Identities=18% Similarity=0.296 Sum_probs=166.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCC-C
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPN-C 89 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~-~ 89 (279)
++++|||+||||+|||+|||++|||+|+++|++|||++|+.+.+++... ..++|+++.+| +|+|++ .
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ip-----dglp~~~~ 70 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATIS-----DGYDQGGF 70 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcC-----CCCCCccc
Confidence 4567999999999999999999999999999999999999887655321 11349999886 478874 2
Q ss_pred CCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHhc----C-CCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHH
Q 044094 90 ENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQC----Q-PDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVA 163 (279)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~~----~-~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~ 163 (279)
+..+ . ...++..+ ..+.+.+++++++. + ++|||+|+|++|+.+||+++|||+|+||++++++++++++
T Consensus 71 ~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 71 SSAG-----S-VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred cccc-----C-HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 3211 1 22455544 36788888888752 4 4999999999999999999999999999999998877765
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCcccCCCCCCCCcCCCC---cHHHHHHHHHHHHhccCEEEEcccccchHHHHHHHH
Q 044094 164 AAQHKPNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNT---DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYE 240 (279)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 240 (279)
.. .. .+...+.+||+|+ ++.+|||+++.+.. .+..++.+..+...+|+|||+|||+|||++++++++
T Consensus 145 ~~-~~------~~~~~~~~pg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 214 (449)
T PLN02173 145 SY-IN------NGSLTLPIKDLPL---LELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLS 214 (449)
T ss_pred HH-hc------cCCccCCCCCCCC---CChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHH
Confidence 32 11 1112355899987 89999998775422 233434445567789999999999999999999997
Q ss_pred HhcCCceEEeccccCC
Q 044094 241 KVTGKVVYPVGPVSLF 256 (279)
Q Consensus 241 ~~~~~~v~~VGPl~~~ 256 (279)
+. ++||+||||++.
T Consensus 215 ~~--~~v~~VGPl~~~ 228 (449)
T PLN02173 215 KV--CPVLTIGPTVPS 228 (449)
T ss_pred hc--CCeeEEcccCch
Confidence 64 589999999753
No 5
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=8.5e-41 Score=313.27 Aligned_cols=228 Identities=16% Similarity=0.250 Sum_probs=169.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFA-SRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCE 90 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La-~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~ 90 (279)
.++|||++|||+|||++||++|||+|+ ++|++|||++|+.|.+++.+... ....|+++.+|+|+. +++|+...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-----~~~~i~~~~lp~p~~-~glp~~~~ 77 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-----NSTGVDIVGLPSPDI-SGLVDPSA 77 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-----cCCCceEEECCCccc-cCCCCCCc
Confidence 457999999999999999999999998 79999999999998766533211 112489999987643 35652211
Q ss_pred CCCCCCCcchHHHHHHHHHHhHHHHHHHHHh--cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHHhcC
Q 044094 91 NLDAIPSRDLSYNFSKAIMMLHPQADDLVRQ--CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQHK 168 (279)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~ 168 (279)
+....+......+.+.+++++++ .+|+|||+|+|++|+.+||+++|||+|+|||++|++++++++++.+.
T Consensus 78 --------~~~~~~~~~~~~~~~~~~~~l~~~~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 149 (481)
T PLN02992 78 --------HVVTKIGVIMREAVPTLRSKIAEMHQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLD 149 (481)
T ss_pred --------cHHHHHHHHHHHhHHHHHHHHHhcCCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhc
Confidence 11122333445677888888876 37899999999999999999999999999999999999888887532
Q ss_pred CC-C-CCCCCCCccccCCCCCCcccCCCCCCCCcCCCC-cHHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHHh---
Q 044094 169 PN-V-NVSSDTETFLVPGLPRPVYITQSQMPDQFFGNT-DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEKV--- 242 (279)
Q Consensus 169 ~~-~-~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~--- 242 (279)
.. . ......+.+.+||+|+ ++.+|+|..+...+ .....+.+..+...+|+|||+|||+|||+++++++++.
T Consensus 150 ~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~ 226 (481)
T PLN02992 150 KDIKEEHTVQRKPLAMPGCEP---VRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLL 226 (481)
T ss_pred cccccccccCCCCcccCCCCc---cCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccc
Confidence 11 1 1011123456899987 89999997554432 22344445556678999999999999999999999753
Q ss_pred ---cCCceEEeccccCC
Q 044094 243 ---TGKVVYPVGPVSLF 256 (279)
Q Consensus 243 ---~~~~v~~VGPl~~~ 256 (279)
.+++||+||||++.
T Consensus 227 ~~~~~~~v~~VGPl~~~ 243 (481)
T PLN02992 227 GRVARVPVYPIGPLCRP 243 (481)
T ss_pred ccccCCceEEecCccCC
Confidence 13689999999764
No 6
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.6e-40 Score=311.89 Aligned_cols=229 Identities=20% Similarity=0.328 Sum_probs=166.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh--cc-cc-CCCCCC-CCeEEEEecCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES--SI-NR-DDYHHH-NPIKLLLLNFPSTAANL 85 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~--~~-~~-~~~~~~-~~i~~~~lp~~~~~~~l 85 (279)
..++|||++|||+|||+|||++|||+|++||+.|||++|+.++.++.+ .+ .. ... .+ ..++|..+| +|+
T Consensus 5 ~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~-~~~~~i~~~~~p-----dgl 78 (480)
T PLN02555 5 SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKP-VGDGFIRFEFFE-----DGW 78 (480)
T ss_pred CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhcccccccccccc-CCCCeEEEeeCC-----CCC
Confidence 345799999999999999999999999999999999999988776653 11 11 000 01 124454443 578
Q ss_pred CCCCCCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHh-----cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHH
Q 044094 86 PPNCENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQ-----CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLS 159 (279)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~-----~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~ 159 (279)
|++.+.. . +. ..++..+ ..+.+.+++++++ .+++|||+|+|++|+.+||+++|||+++|||++|++++
T Consensus 79 p~~~~~~---~--~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~ 152 (480)
T PLN02555 79 AEDDPRR---Q--DL-DLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFS 152 (480)
T ss_pred CCCcccc---c--CH-HHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHH
Confidence 8765421 1 22 2344444 3567778877764 23599999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CCCCCCCCCCccccCCCCCCcccCCCCCCCCcCCCC---cHHHHHHHHHHHHhccCEEEEcccccchHHH
Q 044094 160 LSVAAAQHK-PNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNT---DLQEFFEKLIKAERNSYGVVANTFFEIEPDY 235 (279)
Q Consensus 160 ~~~~~~~~~-~~~~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 235 (279)
++++++... ......+.+..+.+||+|+ ++.+|||+++.... .+...+.+..+...+|+|||+|||+|||+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 229 (480)
T PLN02555 153 AYYHYYHGLVPFPTETEPEIDVQLPCMPL---LKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEI 229 (480)
T ss_pred HHHHHhhcCCCcccccCCCceeecCCCCC---cCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHH
Confidence 999885321 1111111123466999987 89999998775322 2233344445567889999999999999999
Q ss_pred HHHHHHhcCCceEEeccccCC
Q 044094 236 IKHYEKVTGKVVYPVGPVSLF 256 (279)
Q Consensus 236 ~~~l~~~~~~~v~~VGPl~~~ 256 (279)
++++++.. ++|+||||++.
T Consensus 230 ~~~l~~~~--~v~~iGPl~~~ 248 (480)
T PLN02555 230 IDYMSKLC--PIKPVGPLFKM 248 (480)
T ss_pred HHHHhhCC--CEEEeCcccCc
Confidence 99998643 59999999764
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=2.4e-40 Score=308.90 Aligned_cols=217 Identities=16% Similarity=0.299 Sum_probs=161.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEcCCCC-hhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFAS-RGVKATILTTPLN-ISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNC 89 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~-~G~~VT~vtt~~~-~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~ 89 (279)
.++|||++|||+|||+|||++|||+|++ +|++|||++|+.+ .+++.+. .. ..++|+++.++ +|+|++.
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~---~~--~~~~i~~~~i~-----dglp~g~ 71 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN---HN--NVENLSFLTFS-----DGFDDGV 71 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc---CC--CCCCEEEEEcC-----CCCCCcc
Confidence 3469999999999999999999999996 7999999999865 2222211 11 11358998886 5788764
Q ss_pred CCCCCCCCcchHHHHHHHHHHhHHHHHHHHHh-----cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHH
Q 044094 90 ENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQ-----CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAA 164 (279)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~-----~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~ 164 (279)
+... . +....+......+.+.+++++++ .+++|||+|++++|+.+||+++|||+++|||++|+++++++++
T Consensus 72 ~~~~---~-~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~ 147 (455)
T PLN02152 72 ISNT---D-DVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNY 147 (455)
T ss_pred cccc---c-cHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHh
Confidence 3211 1 22223334445667777777764 3469999999999999999999999999999999999999887
Q ss_pred HhcCCCCCCCCCCCccccCCCCCCcccCCCCCCCCcCCCC---cHHHHHHHHHHHHh--ccCEEEEcccccchHHHHHHH
Q 044094 165 AQHKPNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNT---DLQEFFEKLIKAER--NSYGVVANTFFEIEPDYIKHY 239 (279)
Q Consensus 165 ~~~~~~~~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~--~a~~vlvNTf~eLE~~~~~~l 239 (279)
+... ...+.+||+|+ ++.+|||+++...+ .+..++.+..+... +++|||+|||+|||+++++++
T Consensus 148 ~~~~--------~~~~~iPglp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l 216 (455)
T PLN02152 148 STGN--------NSVFEFPNLPS---LEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAI 216 (455)
T ss_pred hccC--------CCeeecCCCCC---CchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhh
Confidence 6311 12356999987 89999999875422 22344444555443 367999999999999999999
Q ss_pred HHhcCCceEEeccccCC
Q 044094 240 EKVTGKVVYPVGPVSLF 256 (279)
Q Consensus 240 ~~~~~~~v~~VGPl~~~ 256 (279)
++ .+||+||||++.
T Consensus 217 ~~---~~v~~VGPL~~~ 230 (455)
T PLN02152 217 PN---IEMVAVGPLLPA 230 (455)
T ss_pred hc---CCEEEEcccCcc
Confidence 65 389999999864
No 8
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.4e-40 Score=307.54 Aligned_cols=232 Identities=17% Similarity=0.278 Sum_probs=163.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRG----VKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPP 87 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G----~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 87 (279)
++.|||++|||+|||+|||++|||+|++|| +.||+++++.+...+.+.+..... ..++|+++.+|++. +.++
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~---~~~~ 77 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSS-SFPSITFHHLPAVT---PYSS 77 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccC-CCCCeEEEEcCCCC---CCCC
Confidence 456999999999999999999999999998 455556666554433221111000 11359999888531 1122
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHhc----CCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHH
Q 044094 88 NCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQC----QPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVA 163 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~----~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~ 163 (279)
+.+ .. ......+......+.+.+++++++. +++|||+|+|++|+.++|+++|||+++|||++|++++++++
T Consensus 78 ~~~--~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~ 152 (451)
T PLN03004 78 SST--SR---HHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFY 152 (451)
T ss_pred ccc--cc---cCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHH
Confidence 211 10 0111233344456677777777652 46999999999999999999999999999999999999998
Q ss_pred HHhcCCCCCCC--CCCCccccCCCCCCcccCCCCCCCCcCCCC-cHHHHHHHHHHHHhccCEEEEcccccchHHHHHHHH
Q 044094 164 AAQHKPNVNVS--SDTETFLVPGLPRPVYITQSQMPDQFFGNT-DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYE 240 (279)
Q Consensus 164 ~~~~~~~~~~~--~~~~~~~iPglp~~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 240 (279)
++......... .+...+.+||+|. ++.+|||+++.+.. ....++.+..+.+.+++|||+|||+|||++++++++
T Consensus 153 ~~~~~~~~~~~~~~~~~~v~iPg~p~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~ 229 (451)
T PLN03004 153 LPTIDETTPGKNLKDIPTVHIPGVPP---MKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAIT 229 (451)
T ss_pred HHhccccccccccccCCeecCCCCCC---CChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHH
Confidence 87532111010 1123356899997 89999998776433 233455555667788999999999999999999998
Q ss_pred HhcC-CceEEeccccC
Q 044094 241 KVTG-KVVYPVGPVSL 255 (279)
Q Consensus 241 ~~~~-~~v~~VGPl~~ 255 (279)
+..+ ++||+||||++
T Consensus 230 ~~~~~~~v~~vGPl~~ 245 (451)
T PLN03004 230 EELCFRNIYPIGPLIV 245 (451)
T ss_pred hcCCCCCEEEEeeecc
Confidence 7543 68999999975
No 9
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.5e-40 Score=307.44 Aligned_cols=222 Identities=18% Similarity=0.337 Sum_probs=162.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCC-C
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPN-C 89 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~-~ 89 (279)
..+.|||+||||+|||+|||++|||+|++||++|||++|+.|+.+. . . ...+|+++.+| +++|++ .
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~-~-----~~~~i~~~~ip-----~glp~~~~ 71 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S-D-----DFTDFQFVTIP-----ESLPESDF 71 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c-c-----CCCCeEEEeCC-----CCCCcccc
Confidence 3557999999999999999999999999999999999999875311 1 0 11248888876 477764 2
Q ss_pred CCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHh------cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHH
Q 044094 90 ENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQ------CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSV 162 (279)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~------~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~ 162 (279)
+. . ... .++... ..+.+.+++++++ .+++|||+|+|++|+.++|+++|||+|+||+++|+++++++
T Consensus 72 ~~---~---~~~-~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~ 144 (451)
T PLN02410 72 KN---L---GPI-EFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRS 144 (451)
T ss_pred cc---c---CHH-HHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHH
Confidence 21 1 111 333333 3556666666654 35799999999999999999999999999999999999988
Q ss_pred HHHhcCCC---CCCCC--CCCccccCCCCCCcccCCCCCCCCcCCCC-cHHHHHHHHHHHHhccCEEEEcccccchHHHH
Q 044094 163 AAAQHKPN---VNVSS--DTETFLVPGLPRPVYITQSQMPDQFFGNT-DLQEFFEKLIKAERNSYGVVANTFFEIEPDYI 236 (279)
Q Consensus 163 ~~~~~~~~---~~~~~--~~~~~~iPglp~~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~ 236 (279)
+++.+... .+... ++....+||+|+ ++.+|+|....... .+..++.... ...+|+|||+|||+|||++++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~ 220 (451)
T PLN02410 145 VFDKLYANNVLAPLKEPKGQQNELVPEFHP---LRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSL 220 (451)
T ss_pred HHHHHHhccCCCCccccccCccccCCCCCC---CChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHH
Confidence 76543211 01111 122346899987 88999997653322 2223333222 357899999999999999999
Q ss_pred HHHHHhcCCceEEeccccCC
Q 044094 237 KHYEKVTGKVVYPVGPVSLF 256 (279)
Q Consensus 237 ~~l~~~~~~~v~~VGPl~~~ 256 (279)
+++++..++|||+||||++.
T Consensus 221 ~~l~~~~~~~v~~vGpl~~~ 240 (451)
T PLN02410 221 SRLQQQLQIPVYPIGPLHLV 240 (451)
T ss_pred HHHHhccCCCEEEecccccc
Confidence 99988777899999999754
No 10
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=6.5e-40 Score=304.97 Aligned_cols=228 Identities=22% Similarity=0.312 Sum_probs=169.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCE 90 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~ 90 (279)
..++|||++|||+|||+|||++|||+|++||++|||+||+.+.+++.+. .... .+..++++.+|.+ +|+|+|.+
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~~~~--~~~~v~~~~~p~~---~glp~g~e 76 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-NLFP--HNIVFRSVTVPHV---DGLPVGTE 76 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-ccCC--CCceEEEEECCCc---CCCCCccc
Confidence 4568999999999999999999999999999999999999987766542 1000 1112555555532 58888766
Q ss_pred CCCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHHhcCCC
Q 044094 91 NLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQHKPN 170 (279)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~ 170 (279)
+..+++. .....+..++..+.+.+++++++.+++|||+|+ ++|+.+||+++|||++.||+++|++++++++ +.
T Consensus 77 ~~~~~~~-~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~---- 149 (453)
T PLN02764 77 TVSEIPV-TSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG---- 149 (453)
T ss_pred ccccCCh-hHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----
Confidence 5443432 223445666677889999999887889999995 9999999999999999999999999988863 21
Q ss_pred CCCCCCCCccccCCCCCC-cccCCCCCCCCcC--CCC---cHHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHHhcC
Q 044094 171 VNVSSDTETFLVPGLPRP-VYITQSQMPDQFF--GNT---DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEKVTG 244 (279)
Q Consensus 171 ~~~~~~~~~~~iPglp~~-~~l~~~dlp~~~~--~~~---~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~ 244 (279)
+.. ...+||+|.. +.++.+|+|++.. ... .+..++.++.+.+.+++|||+|||+|||+++++++++..+
T Consensus 150 ~~~-----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~~~ 224 (453)
T PLN02764 150 GEL-----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKHCR 224 (453)
T ss_pred ccC-----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhhcC
Confidence 111 0225899842 2378888887432 111 2334555554667889999999999999999999987545
Q ss_pred CceEEeccccCC
Q 044094 245 KVVYPVGPVSLF 256 (279)
Q Consensus 245 ~~v~~VGPl~~~ 256 (279)
++||+||||++.
T Consensus 225 ~~v~~VGPL~~~ 236 (453)
T PLN02764 225 KKVLLTGPVFPE 236 (453)
T ss_pred CcEEEeccCccC
Confidence 789999999764
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=5.4e-40 Score=309.52 Aligned_cols=228 Identities=20% Similarity=0.333 Sum_probs=167.5
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEcCCCChh----hhhhccccCCCCCCCCeEEEEecCCCCCC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRG----VKATILTTPLNIS----RFESSINRDDYHHHNPIKLLLLNFPSTAA 83 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G----~~VT~vtt~~~~~----~~~~~~~~~~~~~~~~i~~~~lp~~~~~~ 83 (279)
.++|||++|||+|||+|||++|||+|++|| +.|||++|+.+.. ++.+.+.+... .+..|+++.+|++
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~---- 76 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAA-SGLDIRFHHLPAV---- 76 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhccc-CCCCEEEEECCCC----
Confidence 567999999999999999999999999996 8999999887532 34333221110 1124899988753
Q ss_pred CCCCCCCCCCCCCCcchHHHHHH-HHHHhHHHHHHHHHhc--CCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHH
Q 044094 84 NLPPNCENLDAIPSRDLSYNFSK-AIMMLHPQADDLVRQC--QPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSL 160 (279)
Q Consensus 84 ~lp~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~ 160 (279)
.+|++.+. ...++. ....+.+.+++++++. +++|||+|+|++|+.+||+++|||+++|||++|+++++
T Consensus 77 ~~p~~~e~---------~~~~~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~ 147 (480)
T PLN00164 77 EPPTDAAG---------VEEFISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLAL 147 (480)
T ss_pred CCCCcccc---------HHHHHHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHH
Confidence 23443221 112333 3456788888888763 57999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCC--CCCCCCCccccCCCCCCcccCCCCCCCCcCCCC-cHHHHHHHHHHHHhccCEEEEcccccchHHHHH
Q 044094 161 SVAAAQHKPNV--NVSSDTETFLVPGLPRPVYITQSQMPDQFFGNT-DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIK 237 (279)
Q Consensus 161 ~~~~~~~~~~~--~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 237 (279)
+++++...... ...+....+.+||+|+ ++.+|||.++...+ ....++....+.+.+|+|||+|||+|||+++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~iPGlp~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 224 (480)
T PLN00164 148 MLRLPALDEEVAVEFEEMEGAVDVPGLPP---VPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLA 224 (480)
T ss_pred HhhhhhhcccccCcccccCcceecCCCCC---CChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHH
Confidence 99987532111 1111113356899986 89999998775433 223334444566789999999999999999999
Q ss_pred HHHHhc---C---CceEEeccccCC
Q 044094 238 HYEKVT---G---KVVYPVGPVSLF 256 (279)
Q Consensus 238 ~l~~~~---~---~~v~~VGPl~~~ 256 (279)
++++.. + +++|+||||++.
T Consensus 225 ~~~~~~~~~~~~~~~v~~vGPl~~~ 249 (480)
T PLN00164 225 AIADGRCTPGRPAPTVYPIGPVISL 249 (480)
T ss_pred HHHhccccccCCCCceEEeCCCccc
Confidence 998752 2 589999999753
No 12
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=5.7e-40 Score=306.30 Aligned_cols=228 Identities=19% Similarity=0.294 Sum_probs=168.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCChhhhh--hccccCCCCCCCCeEEEEecCCCCCCCC-CC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASR-GVKATILTTPLNISRFE--SSINRDDYHHHNPIKLLLLNFPSTAANL-PP 87 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~~~~~~--~~~~~~~~~~~~~i~~~~lp~~~~~~~l-p~ 87 (279)
.++|||++|||+|||+|||++|||+|+++ |+.|||++|+.++.++. ..+.... ....|+++.+|++.. +++ +.
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~--~~~~i~~~~lp~~~~-~~l~~~ 78 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAA--ARTTCQITEIPSVDV-DNLVEP 78 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhcccccccccc--CCCceEEEECCCCcc-ccCCCC
Confidence 46799999999999999999999999987 99999999887765441 1121110 012499999986532 233 22
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHhc--CCCEEEecCCCCchHHHHHHhCCC-eEEEeccchHHHHHHHHH
Q 044094 88 NCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQC--QPDAIISDMNFPWTAEIARKYGIP-RLVYHGTCCFSLSLSVAA 164 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~--~~d~vI~D~~~~~~~~vA~~lgiP-~v~f~t~~a~~~~~~~~~ 164 (279)
+ . +....++...+.+.+.+++++++. +++|||+|+|++|+.+||+++||| +++|++++|+++++++++
T Consensus 79 ~--------~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l 149 (470)
T PLN03015 79 D--------A-TIFTKMVVKMRAMKPAVRDAVKSMKRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYL 149 (470)
T ss_pred C--------c-cHHHHHHHHHHhchHHHHHHHHhcCCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhh
Confidence 1 0 122345556667889999999864 789999999999999999999999 699999999999899988
Q ss_pred HhcCCC-CC-CCCCCCccccCCCCCCcccCCCCCCCCcCCCC-c-HHHHHHHHHHHHhccCEEEEcccccchHHHHHHHH
Q 044094 165 AQHKPN-VN-VSSDTETFLVPGLPRPVYITQSQMPDQFFGNT-D-LQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYE 240 (279)
Q Consensus 165 ~~~~~~-~~-~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~ 240 (279)
+..... .. ..+..+.+.+||+|+ ++.+|+|..+.+.. . +..++ +..++..+|+|||+|||+|||++++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~vPg~p~---l~~~dlp~~~~~~~~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~~~~l~ 225 (470)
T PLN03015 150 PVLDTVVEGEYVDIKEPLKIPGCKP---VGPKELMETMLDRSDQQYKECV-RSGLEVPMSDGVLVNTWEELQGNTLAALR 225 (470)
T ss_pred hhhhcccccccCCCCCeeeCCCCCC---CChHHCCHhhcCCCcHHHHHHH-HHHHhcccCCEEEEechHHHhHHHHHHHH
Confidence 754211 11 111123467999987 89999998665432 2 33333 44456789999999999999999999998
Q ss_pred Hhc------CCceEEeccccC
Q 044094 241 KVT------GKVVYPVGPVSL 255 (279)
Q Consensus 241 ~~~------~~~v~~VGPl~~ 255 (279)
+.. ++|+|+||||++
T Consensus 226 ~~~~~~~~~~~~v~~VGPl~~ 246 (470)
T PLN03015 226 EDMELNRVMKVPVYPIGPIVR 246 (470)
T ss_pred hhcccccccCCceEEecCCCC
Confidence 752 367999999974
No 13
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.8e-40 Score=307.25 Aligned_cols=227 Identities=21% Similarity=0.330 Sum_probs=168.7
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCE 90 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~ 90 (279)
+.++|||++|||+|||+|||++|||+|++||++|||+|++.+.+++.+. . . ....+++..+++++. +++|+|.+
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~-~-a---~~~~i~~~~l~~p~~-dgLp~g~~ 75 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHH-N-L---FPDSIVFHPLTIPPV-NGLPAGAE 75 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcc-c-C---CCCceEEEEeCCCCc-cCCCCCcc
Confidence 4568999999999999999999999999999999999999887766542 1 1 112478888876532 47888755
Q ss_pred CCCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHHhcCCC
Q 044094 91 NLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQHKPN 170 (279)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~ 170 (279)
..+++.. .....+..+.+.+.+.+++++++.++||||+| +++|+.++|+++|||+++||+++|++++ +++++.
T Consensus 76 ~~~~l~~-~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~---- 148 (442)
T PLN02208 76 TTSDIPI-SMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG---- 148 (442)
T ss_pred cccchhH-HHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----
Confidence 3222211 11123445556788999999988889999999 5899999999999999999999998765 555442
Q ss_pred CCCCCCCCccccCCCCCC-cccCCCCCCCCcCCCCc-HHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHHhcCCceE
Q 044094 171 VNVSSDTETFLVPGLPRP-VYITQSQMPDQFFGNTD-LQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEKVTGKVVY 248 (279)
Q Consensus 171 ~~~~~~~~~~~iPglp~~-~~l~~~dlp~~~~~~~~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~v~ 248 (279)
... ...+||+|.. +.++.+|+|.+. ..+. +..+..++.+...+|+|||+|||+|||+++++++++..++++|
T Consensus 149 ~~~-----~~~~pglp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~ 222 (442)
T PLN02208 149 GKL-----GVPPPGYPSSKVLFRENDAHALA-TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVL 222 (442)
T ss_pred ccc-----CCCCCCCCCcccccCHHHcCccc-ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEE
Confidence 000 1236899852 347888999642 2122 3333444445667899999999999999999999887678999
Q ss_pred EeccccCC
Q 044094 249 PVGPVSLF 256 (279)
Q Consensus 249 ~VGPl~~~ 256 (279)
+|||+++.
T Consensus 223 ~vGpl~~~ 230 (442)
T PLN02208 223 LTGPMFPE 230 (442)
T ss_pred EEeecccC
Confidence 99999764
No 14
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=5.9e-40 Score=306.27 Aligned_cols=225 Identities=23% Similarity=0.361 Sum_probs=166.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCE 90 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~ 90 (279)
..++|||+||||+|||+|||++|||+|++||++|||+||+.++.++.+... ....|+++.+++|.. +++|+|.+
T Consensus 2 ~~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~-----~~~~i~~~~i~lP~~-dGLP~g~e 75 (446)
T PLN00414 2 GSKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL-----FPDSIVFEPLTLPPV-DGLPFGAE 75 (446)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc-----CCCceEEEEecCCCc-CCCCCccc
Confidence 456899999999999999999999999999999999999988776654211 112488877776643 58888754
Q ss_pred CCCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHHhcCCC
Q 044094 91 NLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQHKPN 170 (279)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~~~~ 170 (279)
...+++. .....+..+...+.+.+++++++.+++|||+|+ ++|+.+||+++|||+++|||++|++++++++...
T Consensus 76 ~~~~l~~-~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~---- 149 (446)
T PLN00414 76 TASDLPN-STKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA---- 149 (446)
T ss_pred ccccchh-hHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh----
Confidence 4332221 112234555667889999988877889999995 8999999999999999999999999998876211
Q ss_pred CCCCCCCCccccCCCCCC-cccCCCCC--CCCcCCCCcHHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHHhcCCce
Q 044094 171 VNVSSDTETFLVPGLPRP-VYITQSQM--PDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEKVTGKVV 247 (279)
Q Consensus 171 ~~~~~~~~~~~iPglp~~-~~l~~~dl--p~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~~~~v 247 (279)
..+ ..+||+|.. +.++.+|+ |.++.. ....+.+..+...+|+|||+|||+|||+++++++++..+++|
T Consensus 150 ----~~~--~~~pg~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v 220 (446)
T PLN00414 150 ----ELG--FPPPDYPLSKVALRGHDANVCSLFAN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKV 220 (446)
T ss_pred ----hcC--CCCCCCCCCcCcCchhhcccchhhcc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCe
Confidence 001 235888752 22444543 343321 123344445567889999999999999999999988656789
Q ss_pred EEeccccCC
Q 044094 248 YPVGPVSLF 256 (279)
Q Consensus 248 ~~VGPl~~~ 256 (279)
|+||||++.
T Consensus 221 ~~VGPl~~~ 229 (446)
T PLN00414 221 LLTGPMLPE 229 (446)
T ss_pred EEEcccCCC
Confidence 999999764
No 15
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-39 Score=305.06 Aligned_cols=226 Identities=17% Similarity=0.335 Sum_probs=169.7
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNC 89 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~ 89 (279)
+..++|||++|||+|||+|||++|||+|++||++|||+||+.+++++.+.+.. ..+|+++.+| ++++++.
T Consensus 3 ~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~-----~~~i~~v~lp-----~g~~~~~ 72 (448)
T PLN02562 3 VTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDP-----KLGITFMSIS-----DGQDDDP 72 (448)
T ss_pred CCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCC-----CCCEEEEECC-----CCCCCCc
Confidence 45567999999999999999999999999999999999999988776554321 1248998876 2454321
Q ss_pred CCCCCCCCcchHHHHHHHHH-HhHHHHHHHHHhc----CCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHH
Q 044094 90 ENLDAIPSRDLSYNFSKAIM-MLHPQADDLVRQC----QPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAA 164 (279)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~l~~~l~~ll~~~----~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~ 164 (279)
+. + +..+..++. .+.+.+++++++. +++|||+|+|++|+.++|+++|||+++||+++++++++++++
T Consensus 73 ------~~-~-~~~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~ 144 (448)
T PLN02562 73 ------PR-D-FFSIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAI 144 (448)
T ss_pred ------cc-c-HHHHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHH
Confidence 11 2 224455554 5788898888763 358999999999999999999999999999999999998887
Q ss_pred HhcCCCCCC--CC---CCCc-cccCCCCCCcccCCCCCCCCcCCC--C-cHHHHHHHHHHHHhccCEEEEcccccchHHH
Q 044094 165 AQHKPNVNV--SS---DTET-FLVPGLPRPVYITQSQMPDQFFGN--T-DLQEFFEKLIKAERNSYGVVANTFFEIEPDY 235 (279)
Q Consensus 165 ~~~~~~~~~--~~---~~~~-~~iPglp~~~~l~~~dlp~~~~~~--~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 235 (279)
+.+...+.. .+ ..+. +.+||+|. ++.+|+|+++... . .....+.+..+...+++|||+|||+|||+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~---l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~ 221 (448)
T PLN02562 145 PELVRTGLISETGCPRQLEKICVLPEQPL---LSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDD 221 (448)
T ss_pred HHHhhccccccccccccccccccCCCCCC---CChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHH
Confidence 653211111 11 1122 35899986 8999999876532 1 2234444555667889999999999999999
Q ss_pred HHHHHHh----cCCceEEeccccCC
Q 044094 236 IKHYEKV----TGKVVYPVGPVSLF 256 (279)
Q Consensus 236 ~~~l~~~----~~~~v~~VGPl~~~ 256 (279)
++++++. ..+++|+||||++.
T Consensus 222 ~~~~~~~~~~~~~~~v~~iGpl~~~ 246 (448)
T PLN02562 222 VKNHQASYNNGQNPQILQIGPLHNQ 246 (448)
T ss_pred HHHHHhhhccccCCCEEEecCcccc
Confidence 9988753 23689999999764
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5e-39 Score=303.78 Aligned_cols=245 Identities=40% Similarity=0.765 Sum_probs=177.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccC-CCCCCCCeEEEEecCCCCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRD-DYHHHNPIKLLLLNFPSTAANLPPNC 89 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~-~~~~~~~i~~~~lp~~~~~~~lp~~~ 89 (279)
+++.|||++|||+|||+|||++|||+|++||++|||++|+.+.+++.+..... ....+..+++..+++|..++++|+|.
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 45679999999999999999999999999999999999999887665432210 00011124666666664435788876
Q ss_pred CCCCCCC---C---cchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHH
Q 044094 90 ENLDAIP---S---RDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVA 163 (279)
Q Consensus 90 ~~~~~~~---~---~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~ 163 (279)
+....++ . ..+...+......+.+.+++++++.++||||+|.+++|+.++|+++|||+|+|||++|++++++++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~ 162 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYC 162 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHH
Confidence 5432111 0 022333444556788889998887789999999999999999999999999999999999988887
Q ss_pred HHhcCCCCCCCCCCCccccCCCCCCcccCCCCCCCCcCCCCcHHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHHhc
Q 044094 164 AAQHKPNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEKVT 243 (279)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 243 (279)
+....+.....+....+.+||+|+.+.++..++|..- ....+..++....+...++++|++|||+|||+++++++++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~~~~~ 241 (482)
T PLN03007 163 IRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDAD-EESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFYKSFV 241 (482)
T ss_pred HHhcccccccCCCCceeeCCCCCCccccCHHhcCCCC-CchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHHHhcc
Confidence 7543222111111223558999864557778888531 112234455555556788999999999999999999998766
Q ss_pred CCceEEeccccCC
Q 044094 244 GKVVYPVGPVSLF 256 (279)
Q Consensus 244 ~~~v~~VGPl~~~ 256 (279)
++++|+||||.+.
T Consensus 242 ~~~~~~VGPl~~~ 254 (482)
T PLN03007 242 AKRAWHIGPLSLY 254 (482)
T ss_pred CCCEEEEcccccc
Confidence 5689999998764
No 17
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=5.9e-39 Score=300.72 Aligned_cols=223 Identities=20% Similarity=0.364 Sum_probs=166.8
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHH--HHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARI--FASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPP 87 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~--La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 87 (279)
...+.|||++|||+|||+||||+|||+ |++||++|||++|+.+++++.+ ... ....+++..+| +++|+
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~-~~~----~~~~~~~~~~~-----~glp~ 74 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLST-VEK----PRRPVDLVFFS-----DGLPK 74 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcc-ccC----CCCceEEEECC-----CCCCC
Confidence 445679999999999999999999999 5699999999999998776532 111 11235665554 47777
Q ss_pred CCCCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHHh
Q 044094 88 NCENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQ 166 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~ 166 (279)
+.+. .. ..++..+ +.+.+.+++++++.+|||||+|.+++|+.+||+++|||+++||++++++++++++++.
T Consensus 75 ~~~~-------~~-~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~ 146 (456)
T PLN02210 75 DDPR-------AP-ETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYM 146 (456)
T ss_pred Cccc-------CH-HHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhh
Confidence 6421 11 2344444 4667888888888889999999999999999999999999999999999999887753
Q ss_pred cC-CCCCCCCCCCccccCCCCCCcccCCCCCCCCcCCCCc--HHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHHhc
Q 044094 167 HK-PNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNTD--LQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEKVT 243 (279)
Q Consensus 167 ~~-~~~~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 243 (279)
.. ......+..+.+.+||+|+ ++.+|+|+++..... +..++.++.+...++++|++|||+|||+++++++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~Pgl~~---~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~- 222 (456)
T PLN02210 147 KTNSFPDLEDLNQTVELPALPL---LEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL- 222 (456)
T ss_pred ccCCCCcccccCCeeeCCCCCC---CChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc-
Confidence 21 1111111113356899986 899999987754322 2334445545567899999999999999999999873
Q ss_pred CCceEEeccccC
Q 044094 244 GKVVYPVGPVSL 255 (279)
Q Consensus 244 ~~~v~~VGPl~~ 255 (279)
+++|+|||+++
T Consensus 223 -~~v~~VGPl~~ 233 (456)
T PLN02210 223 -KPVIPIGPLVS 233 (456)
T ss_pred -CCEEEEcccCc
Confidence 68999999985
No 18
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.7e-38 Score=295.49 Aligned_cols=237 Identities=19% Similarity=0.344 Sum_probs=156.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCC---eEEEEcCCCChh-hhhhccccCCCCCCCCeEEEEecCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGV---KATILTTPLNIS-RFESSINRDDYHHHNPIKLLLLNFPSTAANLP 86 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~---~VT~vtt~~~~~-~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp 86 (279)
++++|||+||||+|||+|||++|||+|++||. .||+++|..+.. .....+..... ..++|+|+.+|++. + |
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~---~-p 75 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIA-SEPRIRLVTLPEVQ---D-P 75 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhccc-CCCCeEEEECCCCC---C-C
Confidence 35679999999999999999999999999994 567776654432 11111111000 11359999998642 1 2
Q ss_pred CCCCCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHh-----c-CCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHH
Q 044094 87 PNCENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQ-----C-QPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLS 159 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~-----~-~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~ 159 (279)
++.+....... ..+..+...+ ..+.+.+++++.+ . +++|||+|+|++|+.+||+++|||+++|||++|++++
T Consensus 76 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~ 154 (475)
T PLN02167 76 PPMELFVKASE-AYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLG 154 (475)
T ss_pred ccccccccchH-HHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHH
Confidence 22111010000 1112222221 2344444444322 1 4699999999999999999999999999999999999
Q ss_pred HHHHHHhcC-CCC-CC--CCCCCccccCCCCCCcccCCCCCCCCcCCCCcHHHHHHHHHHHHhccCEEEEcccccchHHH
Q 044094 160 LSVAAAQHK-PNV-NV--SSDTETFLVPGLPRPVYITQSQMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDY 235 (279)
Q Consensus 160 ~~~~~~~~~-~~~-~~--~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 235 (279)
++++++... ... .. .+..+.+.+||+|+. ++..|+|.++.+...+ ..+.+..+...+|+|||+|||+|||+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~--l~~~dlp~~~~~~~~~-~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 155 MMKYLPERHRKTASEFDLSSGEEELPIPGFVNS--VPTKVLPPGLFMKESY-EAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHHHHHhccccccccccCCCCCeeECCCCCCC--CChhhCchhhhCcchH-HHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 999887532 111 11 111234568999532 8889999766543222 3344455667899999999999999999
Q ss_pred HHHHHHhcC--CceEEeccccCC
Q 044094 236 IKHYEKVTG--KVVYPVGPVSLF 256 (279)
Q Consensus 236 ~~~l~~~~~--~~v~~VGPl~~~ 256 (279)
++++++..+ +++|+||||++.
T Consensus 232 ~~~l~~~~~~~p~v~~vGpl~~~ 254 (475)
T PLN02167 232 FDYFSRLPENYPPVYPVGPILSL 254 (475)
T ss_pred HHHHHhhcccCCeeEEecccccc
Confidence 999976421 689999999864
No 19
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.7e-37 Score=290.34 Aligned_cols=232 Identities=18% Similarity=0.304 Sum_probs=163.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCCCh-hhhhhccccCCCCCCCCeEEEEecCCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRG--VKATILTTPLNI-SRFESSINRDDYHHHNPIKLLLLNFPSTAANLPP 87 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G--~~VT~vtt~~~~-~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 87 (279)
++++|||++|||+|||+|||++|||+|++|| +.|||++|+.++ ..+.+.+..... ..+.|+|+.+|... ..++
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~---~~~~ 76 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIAS-SQPFVRFIDVPELE---EKPT 76 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccC-CCCCeEEEEeCCCC---CCCc
Confidence 3567999999999999999999999999998 999999999876 323222221000 11259999998321 1121
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHh----HHHHHHHHHhc-----CCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHH
Q 044094 88 NCENLDAIPSRDLSYNFSKAIMML----HPQADDLVRQC-----QPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSL 158 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l----~~~l~~ll~~~-----~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~ 158 (279)
. .... +....+...+..+ ++.+++++++. +++|||+|.|++|+.+||+++|||+++|||++|+++
T Consensus 77 ~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~ 150 (468)
T PLN02207 77 L-GGTQ-----SVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFL 150 (468)
T ss_pred c-cccc-----CHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHH
Confidence 1 0001 1122333333333 56677776642 358999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCCC--CCCCCccccCCC-CCCcccCCCCCCCCcCCCCcHHHHHHHHHHHHhccCEEEEcccccchHH
Q 044094 159 SLSVAAAQHKP-NVNV--SSDTETFLVPGL-PRPVYITQSQMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPD 234 (279)
Q Consensus 159 ~~~~~~~~~~~-~~~~--~~~~~~~~iPgl-p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 234 (279)
+++++++.... .... .+.+..+.+||+ |+ ++.+|+|+++...+.+.. +.+..+.+.++++||+|||+|||.+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~---l~~~dlp~~~~~~~~~~~-~~~~~~~~~~~~~vlvNtf~~LE~~ 226 (468)
T PLN02207 151 AMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNP---VPANVLPSALFVEDGYDA-YVKLAILFTKANGILVNSSFDIEPY 226 (468)
T ss_pred HHHHHhhhccccccccCcCCCCCeEECCCCCCC---CChHHCcchhcCCccHHH-HHHHHHhcccCCEEEEEchHHHhHH
Confidence 99998875321 1111 111234678999 44 899999987754333333 3344456789999999999999999
Q ss_pred HHHHHHHh-cCCceEEeccccCC
Q 044094 235 YIKHYEKV-TGKVVYPVGPVSLF 256 (279)
Q Consensus 235 ~~~~l~~~-~~~~v~~VGPl~~~ 256 (279)
+++++++. ..+++|+|||+++.
T Consensus 227 ~~~~~~~~~~~p~v~~VGPl~~~ 249 (468)
T PLN02207 227 SVNHFLDEQNYPSVYAVGPIFDL 249 (468)
T ss_pred HHHHHHhccCCCcEEEecCCccc
Confidence 99999762 22679999999763
No 20
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.4e-37 Score=292.16 Aligned_cols=228 Identities=18% Similarity=0.304 Sum_probs=161.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCCChhhhh---hccccCCCCCCCCeEEEEecCCCCCCCCCC
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRG--VKATILTTPLNISRFE---SSINRDDYHHHNPIKLLLLNFPSTAANLPP 87 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G--~~VT~vtt~~~~~~~~---~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 87 (279)
+.|||++|||+|||++|||+|||+|++|| +.|||++|+.++.++. +.+.+......++|+++.+|++ .++
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-----~~~ 76 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAG-----DQP 76 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCC-----CCC
Confidence 57999999999999999999999999998 9999999998865431 1111100000224999988753 221
Q ss_pred CCCCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHh------cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHH
Q 044094 88 NCENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQ------CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSL 160 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~------~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~ 160 (279)
. .... . +..++..+ ..+.+.+++++.+ .+++|||+|+|++|+.+||+++|||+++|||++|+++++
T Consensus 77 ~----~~~~--~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~ 149 (481)
T PLN02554 77 T----TEDP--T-FQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGL 149 (481)
T ss_pred c----ccch--H-HHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHH
Confidence 1 0011 1 12233323 3556666666543 234899999999999999999999999999999999999
Q ss_pred HHHHHhcCCC---C--CCCCCCCccccCCCCCCcccCCCCCCCCcCCCCcHHHHHHHHHHHHhccCEEEEcccccchHHH
Q 044094 161 SVAAAQHKPN---V--NVSSDTETFLVPGLPRPVYITQSQMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDY 235 (279)
Q Consensus 161 ~~~~~~~~~~---~--~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 235 (279)
+++++..... . ...+..+.+.+||++. +++.+|+|+++.+. .+..++.+..+.+.+++|||+|||+|||+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~--pl~~~dlp~~~~~~-~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 150 QLHVQMLYDEKKYDVSELEDSEVELDVPSLTR--PYPVKCLPSVLLSK-EWLPLFLAQARRFREMKGILVNTVAELEPQA 226 (481)
T ss_pred HHhhhhhccccccCccccCCCCceeECCCCCC--CCCHHHCCCcccCH-HHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 9998764211 1 1111113466999852 28999999876542 3334444555677899999999999999999
Q ss_pred HHHHHHh--cCCceEEeccccC
Q 044094 236 IKHYEKV--TGKVVYPVGPVSL 255 (279)
Q Consensus 236 ~~~l~~~--~~~~v~~VGPl~~ 255 (279)
+.++++. ..+++|+|||++.
T Consensus 227 ~~~l~~~~~~~~~v~~vGpl~~ 248 (481)
T PLN02554 227 LKFFSGSSGDLPPVYPVGPVLH 248 (481)
T ss_pred HHHHHhcccCCCCEEEeCCCcc
Confidence 9999863 2368999999954
No 21
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.5e-37 Score=288.42 Aligned_cols=227 Identities=20% Similarity=0.323 Sum_probs=170.8
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASR--GVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPP 87 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 87 (279)
...++|||++|||+|||+|||++||++|++| |++|||++|+.+.+++.+... ..+++|+.+| +++|+
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~------~~gi~fv~lp-----~~~p~ 75 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK------PDNIRFATIP-----NVIPS 75 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC------CCCEEEEECC-----CCCCC
Confidence 4567899999999999999999999999999 999999999998877665321 1248998887 34555
Q ss_pred CCCCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHh--cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHH
Q 044094 88 NCENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQ--CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAA 164 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~ 164 (279)
+.+.. . +. ..++..+ +.+.+.+++++++ .++||||+|.+++|+.++|+++|||+|.||+++++++++++++
T Consensus 76 ~~~~~---~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 149 (459)
T PLN02448 76 ELVRA---A--DF-PGFLEAVMTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHF 149 (459)
T ss_pred ccccc---c--CH-HHHHHHHHHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHh
Confidence 43211 1 22 2334333 4677788888876 3689999999999999999999999999999999999998887
Q ss_pred HhcCCCC--CCCC---CCCcc-ccCCCCCCcccCCCCCCCCcCCCC-cHHHHHHHHHHHHhccCEEEEcccccchHHHHH
Q 044094 165 AQHKPNV--NVSS---DTETF-LVPGLPRPVYITQSQMPDQFFGNT-DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIK 237 (279)
Q Consensus 165 ~~~~~~~--~~~~---~~~~~-~iPglp~~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~ 237 (279)
+...... .... ..+.+ .+||+++ ++..|+|.++.... ...+.+.+..+...++++||+|||+|||+++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~iPg~~~---l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 226 (459)
T PLN02448 150 DLLPQNGHFPVELSESGEERVDYIPGLSS---TRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAID 226 (459)
T ss_pred hhhhhccCCCCccccccCCccccCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHH
Confidence 6432111 1111 11222 4899886 89999998765432 223344455556778999999999999999999
Q ss_pred HHHHhcCCceEEeccccCC
Q 044094 238 HYEKVTGKVVYPVGPVSLF 256 (279)
Q Consensus 238 ~l~~~~~~~v~~VGPl~~~ 256 (279)
++++.+++++|+|||+++.
T Consensus 227 ~l~~~~~~~~~~iGP~~~~ 245 (459)
T PLN02448 227 ALKSKFPFPVYPIGPSIPY 245 (459)
T ss_pred HHHhhcCCceEEecCcccc
Confidence 9988766689999999764
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.57 E-value=6.3e-15 Score=136.46 Aligned_cols=127 Identities=15% Similarity=0.126 Sum_probs=84.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCC--
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCEN-- 91 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~-- 91 (279)
+||+++++|++||++|++.||++|++|||+|||++++.....+.. .| ++|+.++. ..+.....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~--------~G--~~~~~~~~-----~~~~~~~~~~ 65 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA--------AG--LEFVPVGG-----DPDELLASPE 65 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH--------cC--CceeeCCC-----CHHHHHhhhh
Confidence 489999999999999999999999999999999999876655543 23 67776542 11100000
Q ss_pred -CCC--CCCcchH----HHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccch
Q 044094 92 -LDA--IPSRDLS----YNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 92 -~~~--~~~~~~~----~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a 155 (279)
... ....... ..+......+...+.+.+++.++||||+|.+..|+..+|+++|||++.+++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 66 RNAGLLLLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred hcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 000 0000011 111112222333334444457999999999999999999999999999987764
No 23
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.53 E-value=2e-16 Score=150.44 Aligned_cols=236 Identities=21% Similarity=0.327 Sum_probs=126.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeE---EEEecCCCCCCCCCCCC
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIK---LLLLNFPSTAANLPPNC 89 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~---~~~lp~~~~~~~lp~~~ 89 (279)
+.|++++|+|++||++|+++||++|+++||+||++++..+....... . ....+. ...+++....++++++.
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-S-----KSKSIKKINPPPFEFLTIPDGLPEGW 78 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-c-----cceeeeeeecChHHhhhhhhhhccch
Confidence 67999999999999999999999999999999999998765543221 1 000111 11111111012333322
Q ss_pred CCCCCCCCcchHHHHHHHHH-HhHHHHHHHHHh--cCCCEEEecCCCCchHHHHHHhC-CCeEEEeccchHHHHHHHHHH
Q 044094 90 ENLDAIPSRDLSYNFSKAIM-MLHPQADDLVRQ--CQPDAIISDMNFPWTAEIARKYG-IPRLVYHGTCCFSLSLSVAAA 165 (279)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~l~~~l~~ll~~--~~~d~vI~D~~~~~~~~vA~~lg-iP~v~f~t~~a~~~~~~~~~~ 165 (279)
+... .........+...+. .+......+... .++||+|+|.|+.|...+|.+.+ ++..++++.++...++.+..+
T Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~ 157 (496)
T KOG1192|consen 79 EDDD-LDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP 157 (496)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc
Confidence 1100 000000112222222 233333333322 34999999999999999998875 999999999988776665544
Q ss_pred hc-CCCCCCCCCCCccccCCCCCCcccCCCCCCCCcCCCC---cHHHHHHHHH----HHHhccCEEEEcc-cccchHHHH
Q 044094 166 QH-KPNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNT---DLQEFFEKLI----KAERNSYGVVANT-FFEIEPDYI 236 (279)
Q Consensus 166 ~~-~~~~~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~---~~~~~~~~~~----~~~~~a~~vlvNT-f~eLE~~~~ 236 (279)
.. .+............+++.... +...+++....... .......... .....+++++.|| |.++|+...
T Consensus 158 ~~~~p~~~~~~~~~~~~~~~~~~n--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~ 235 (496)
T KOG1192|consen 158 LSYVPSPFSLSSGDDMSFPERVPN--LIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPL 235 (496)
T ss_pred ccccCcccCccccccCcHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcc
Confidence 32 000000000011112221110 11222222111100 0001111111 1113455788888 999999888
Q ss_pred HHHHHh-cCCceEEeccccCCC
Q 044094 237 KHYEKV-TGKVVYPVGPVSLFN 257 (279)
Q Consensus 237 ~~l~~~-~~~~v~~VGPl~~~~ 257 (279)
..++.. ..+++++|||++...
T Consensus 236 ~~~~~~~~~~~v~~IG~l~~~~ 257 (496)
T KOG1192|consen 236 LDFEPRPLLPKVIPIGPLHVKD 257 (496)
T ss_pred cCCCCCCCCCCceEECcEEecC
Confidence 666333 357899999998763
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.50 E-value=1e-13 Score=128.25 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=81.1
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCc
Q 044094 19 VPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSR 98 (279)
Q Consensus 19 vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~ 98 (279)
+.+|++||++|++.||++|.++||+|||++++.+.+.+.+ .| ++++.++... ..++..+........
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~--------~G--~~~~~~~~~~---~~~~~~~~~~~~~~~ 67 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA--------AG--AEFVLYGSAL---PPPDNPPENTEEEPI 67 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH--------cC--CEEEecCCcC---ccccccccccCcchH
Confidence 4689999999999999999999999999999888777665 23 7777665310 001110000000001
Q ss_pred chHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEecc
Q 044094 99 DLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 99 ~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
.....+......+.+.+.+++++.+|||||+|.++.|+..+|+++|||+|.+.+.
T Consensus 68 ~~~~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 68 DIIEKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 1122222222223344555556678999999999999999999999999988653
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.14 E-value=1.8e-11 Score=96.64 Aligned_cols=124 Identities=19% Similarity=0.201 Sum_probs=75.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 044094 16 VFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAI 95 (279)
Q Consensus 16 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~ 95 (279)
|+++..++.||++|++.|+++|.+|||+|++.+.+...+.+.+ .| +.|+.++.. ..++.........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~--------~G--l~~~~~~~~---~~~~~~~~~~~~~ 67 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA--------AG--LEFVPIPGD---SRLPRSLEPLANL 67 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH--------TT---EEEESSSC---GGGGHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc--------cC--ceEEEecCC---cCcCcccchhhhh
Confidence 6899999999999999999999999999999999888777754 33 888877521 0011000000000
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHh--------cCCCEEEecCCCCchHHHHHHhCCCeEEEeccch
Q 044094 96 PSRDLSYNFSKAIMMLHPQADDLVRQ--------CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~~l~~ll~~--------~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a 155 (279)
..............+.+++...+ ...++++.+.....+..+|+++|||++.....+.
T Consensus 68 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 68 ---RRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp ---HCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred ---hhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 00001111111122222222111 2467888888788889999999999998876653
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.44 E-value=7.6e-07 Score=85.20 Aligned_cols=130 Identities=12% Similarity=0.233 Sum_probs=75.9
Q ss_pred EEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCC--
Q 044094 15 HVFFV-PFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCEN-- 91 (279)
Q Consensus 15 hvv~v-p~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~-- 91 (279)
+|+++ |.++.+|.+-+-.|+++|++|||+||++++.... ..... ...+++...++... +.+.+....
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~-~~~~~-------~~~~~~~i~~~~~~--~~~~~~~~~~~ 91 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRV-YYASH-------LCGNITEIDASLSV--EYFKKLVKSSA 91 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccc-ccccC-------CCCCEEEEEcCCCh--HHHHHHHhhhh
Confidence 57744 9999999999999999999999999999765311 01000 01235554443110 000000000
Q ss_pred -C---CCCCC-cchH----HHHHHHHH-Hh-HHHHHHHHH--hcCCCEEEecCCCCchHHHHHHh-CCCeEEEeccc
Q 044094 92 -L---DAIPS-RDLS----YNFSKAIM-ML-HPQADDLVR--QCQPDAIISDMNFPWTAEIARKY-GIPRLVYHGTC 154 (279)
Q Consensus 92 -~---~~~~~-~~~~----~~~~~~~~-~l-~~~l~~ll~--~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~t~~ 154 (279)
. ..... .... ..+...++ .+ .+.+.++++ +.++|+||+|.+...+..+|+++ |+|.|..++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~ 168 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGY 168 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCC
Confidence 0 00000 0000 11122222 22 356677776 56799999998888778899999 99977666544
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.35 E-value=8.6e-07 Score=82.57 Aligned_cols=46 Identities=20% Similarity=0.303 Sum_probs=42.3
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
+++|+++..|..||++|++.|+++|.++||+|+|++++...+.+.+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ 46 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA 46 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH
Confidence 3589999999999999999999999999999999999988877765
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.30 E-value=5.6e-06 Score=74.19 Aligned_cols=116 Identities=22% Similarity=0.288 Sum_probs=68.1
Q ss_pred EEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 15 HVFFVPF-MSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 15 hvv~vp~-p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
||++... -|.||+.-.+.|+++| |||+|+|++.....+.+.. .+....++.. +.... . .
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~----~~~~~--~-~ 61 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----------RFPVREIPGL----GPIQE--N-G 61 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----------ccCEEEccCc----eEecc--C-C
Confidence 5664433 5899999999999999 6999999987754333321 1233333210 01110 0 0
Q ss_pred CCCCcchHHHHHH------HHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccc
Q 044094 94 AIPSRDLSYNFSK------AIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 94 ~~~~~~~~~~~~~------~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~ 154 (279)
.+ +....... ........+.+++++.+||+||+|. .+.+...|+..|||++.+....
T Consensus 62 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~ 124 (318)
T PF13528_consen 62 RL---DRWKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQY 124 (318)
T ss_pred cc---chHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehH
Confidence 01 11111111 1112223344556668999999995 4556788999999999876554
No 29
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.05 E-value=3.2e-05 Score=69.74 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=67.1
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeE-EEEecCCCCCCCCCCCCCCCCCCC
Q 044094 18 FVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIK-LLLLNFPSTAANLPPNCENLDAIP 96 (279)
Q Consensus 18 ~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~-~~~lp~~~~~~~lp~~~~~~~~~~ 96 (279)
.+.-.|.||+.|.+.++++|.+ ||+|+|+++......+... + +. +..+|... -..+++. +
T Consensus 5 ~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~--------~--~~~~~~~p~~~--~~~~~~~-----~- 65 (321)
T TIGR00661 5 SVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKY--------G--FKVFETFPGIK--LKGEDGK-----V- 65 (321)
T ss_pred EEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhh--------c--CcceeccCCce--EeecCCc-----C-
Confidence 4666788999999999999999 9999999876522222211 1 21 22211000 0001110 0
Q ss_pred CcchHHHHHH--HH-HHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccc
Q 044094 97 SRDLSYNFSK--AI-MMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 97 ~~~~~~~~~~--~~-~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~ 154 (279)
+....+.. .. ........+++++.+||+||+| +-+.+..+|+.+|||.+.+.-+.
T Consensus 66 --~~~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 66 --NIVKTLRNKEYSPKKAIRREINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred --cHHHHHHhhccccHHHHHHHHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 11111110 01 1111223456777899999999 56677889999999999665443
No 30
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.00 E-value=2.1e-05 Score=75.11 Aligned_cols=35 Identities=34% Similarity=0.467 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
+|+++|+ +.+|+++|..|+++|++|||+||++++.
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~ 36 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPS 36 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEee
Confidence 6888885 8899999999999999999999999864
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.60 E-value=0.0018 Score=59.30 Aligned_cols=123 Identities=16% Similarity=0.171 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDA 94 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~ 94 (279)
+|++..-..-||+.|.+.+|++|.++||+|+|+++..-.+. ..++ ..++.+..++. .++...
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l~~------~~g~~~~~~~~----~~l~~~------ 64 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TIIE------KENIPYYSISS----GKLRRY------ 64 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--ccCc------ccCCcEEEEec----cCcCCC------
Confidence 57777777779999999999999999999999987653221 1111 11366666642 122110
Q ss_pred CCCcchHHHHHHHHHHhH--HHHHHHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEeccchHHHH
Q 044094 95 IPSRDLSYNFSKAIMMLH--PQADDLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGTCCFSLS 159 (279)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~~a~~~~ 159 (279)
..+..+......+. -....++++.+||+||....... +...|+.+|+|.+++-......++
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g~~ 129 (352)
T PRK12446 65 ----FDLKNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPGLA 129 (352)
T ss_pred ----chHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCccHH
Confidence 00111111111111 12234577789999999764443 467789999999877554433333
No 32
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.14 E-value=0.0092 Score=53.86 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=67.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDA 94 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~ 94 (279)
+|++..--.-||+...+.|++.|.++||+|++++...... . .... ..++++..++.+ ++... .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~~~------~~~~~~~~~~~~----~~~~~----~- 63 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RLVP------KAGIPLHTIPVG----GLRRK----G- 63 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hccc------ccCCceEEEEec----CcCCC----C-
Confidence 3566666667999999999999999999999998754211 1 1110 113667666532 11110 0
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCC-C-chHHHHHHhCCCeEEE
Q 044094 95 IPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNF-P-WTAEIARKYGIPRLVY 150 (279)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~-~-~~~~vA~~lgiP~v~f 150 (279)
....+..++... .....+.+++++.+||+|++..-. . ++...|+..|+|.+..
T Consensus 64 --~~~~~~~~~~~~-~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 64 --SLKKLKAPFKLL-KGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred --hHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 001111111111 122345566777899999987532 3 3456678889999864
No 33
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.06 E-value=0.015 Score=53.35 Aligned_cols=122 Identities=19% Similarity=0.248 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGV-KATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~-~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
.|++.---.-||+.|.+.|++.|.++|. +|.++.+....+.... ....+.++.++.. ++... .
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~--------~~~~~~~~~I~~~----~~~~~-~--- 65 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV--------KQYGIEFELIPSG----GLRRK-G--- 65 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec--------cccCceEEEEecc----ccccc-C---
Confidence 4566667777999999999999999999 5777755443322111 0124777777631 22111 0
Q ss_pred CCCCcchHHHHHHHHHH--hHHHHHHHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEeccchHHH
Q 044094 94 AIPSRDLSYNFSKAIMM--LHPQADDLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGTCCFSL 158 (279)
Q Consensus 94 ~~~~~~~~~~~~~~~~~--l~~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~~a~~~ 158 (279)
.+..+...+.. .....++++++.+||+||.=..+.. +.-.|..+|||.+..-+-....+
T Consensus 66 ------~~~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ 128 (357)
T COG0707 66 ------SLKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGL 128 (357)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcch
Confidence 01111111111 1234456777889999999554443 45667899999998765544333
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=96.78 E-value=0.032 Score=50.25 Aligned_cols=116 Identities=22% Similarity=0.243 Sum_probs=68.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDA 94 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~ 94 (279)
+|+++.--..||+...++|++.|.++||+|++++.+.... ..... ..+++++.++.. ... + ..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~--~~~~~------~~g~~~~~i~~~----~~~-~---~~- 64 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE--KRLVP------KAGIEFYFIPVG----GLR-R---KG- 64 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch--hcccc------cCCCceEEEecc----CcC-C---CC-
Confidence 6888888888999987899999999999999997643211 01100 013566655421 110 0 00
Q ss_pred CCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCC-c-hHHHHHHhCCCeEEE
Q 044094 95 IPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFP-W-TAEIARKYGIPRLVY 150 (279)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~-~-~~~vA~~lgiP~v~f 150 (279)
....+...+... .....+.+++++.+||+|++..... + +...++..|+|.+.+
T Consensus 65 --~~~~l~~~~~~~-~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 65 --SFRLIKTPLKLL-KAVFQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred --hHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 001111111111 1223456677788999999975433 2 344577889999864
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=96.77 E-value=0.036 Score=50.35 Aligned_cols=117 Identities=18% Similarity=0.199 Sum_probs=69.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
++|+++.-..-||..-++.|++.|.++||+|++++....... .... ...++++.++.+ ++...
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~--~~~~------~~g~~~~~~~~~----~~~~~----- 64 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA--RLVP------KAGIEFHFIPSG----GLRRK----- 64 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh--hccc------cCCCcEEEEecc----CcCCC-----
Confidence 468888776679999999999999999999999987542111 1100 113566665421 11110
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCC-Cch-HHHHHHhCCCeEEE
Q 044094 94 AIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNF-PWT-AEIARKYGIPRLVY 150 (279)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~-~~~-~~vA~~lgiP~v~f 150 (279)
............. .....+.+++++.+||+|++.... .|. ..+++..|+|.+..
T Consensus 65 --~~~~~l~~~~~~~-~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 65 --GSLANLKAPFKLL-KGVLQARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred --ChHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 0000011111111 122344566777899999999733 443 45567788998865
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.32 E-value=0.021 Score=52.96 Aligned_cols=111 Identities=13% Similarity=0.146 Sum_probs=65.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
++|++..--.-||+.|. .|++.|.++|.+|+|+..... +++... ....+.+..++. .|+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~--~m~~~g------~~~~~~~~~l~v----~G~~------- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP--RMAAEG------CEVLYSMEELSV----MGLR------- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH--HHHhCc------CccccChHHhhh----ccHH-------
Confidence 57888877888999999 999999999999999976532 333210 000122222211 0110
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEe-cCCCCc--hHHHHHHhCCCeEEE
Q 044094 94 AIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIIS-DMNFPW--TAEIARKYGIPRLVY 150 (279)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~-D~~~~~--~~~vA~~lgiP~v~f 150 (279)
+.+..+.. .........+++++.+||+||. |.-... ....|+++|||.+.+
T Consensus 66 -----~~l~~~~~-~~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 66 -----EVLGRLGR-LLKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred -----HHHHHHHH-HHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 01111111 1123345666777789998776 642212 234688999999987
No 37
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.77 E-value=0.22 Score=46.57 Aligned_cols=121 Identities=16% Similarity=0.072 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENL 92 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~ 92 (279)
+.+|+++.....|+-.=+..+|+.|+++||+||+++....... .... ...++.++.++.. +.. .
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~~------~~~~v~~~~~~~~------~~~---~ 66 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEIL------SNPNITIHPLPPP------PQR---L 66 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHHh------cCCCEEEEECCCC------ccc---c
Confidence 4567777777777778889999999999999999986532111 1100 1234777766421 100 0
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecC-CC---CchHH-HHHHhCCCeEEEe
Q 044094 93 DAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDM-NF---PWTAE-IARKYGIPRLVYH 151 (279)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~-~~---~~~~~-vA~~lgiP~v~f~ 151 (279)
.... ..+..+..........+..++...++|+|++-. .. .+... .++..|+|.|+-|
T Consensus 67 ~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~ 128 (415)
T cd03816 67 NKLP--FLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDW 128 (415)
T ss_pred ccch--HHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEc
Confidence 0000 111111111122233344455556899988743 11 22233 3556799988643
No 38
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=95.69 E-value=0.32 Score=44.89 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH-
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNFSKAI- 108 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~- 108 (279)
+-+||+.|+++||+|+++|....... .+ +++.+.++.... +.. ... .+...+....
T Consensus 13 ~~~la~~L~~~G~~v~~~~~~~~~~~-----------~~-~v~~~~~~~~~~----~~~----~~~---~~~~~~~~~~~ 69 (396)
T cd03818 13 FRHLAPALAAQGHEVVFLTEPNAAPP-----------PG-GVRVVRYRPPRG----PTS----GTH---PYLREFEEAVL 69 (396)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCCC-----------CC-CeeEEEecCCCC----CCC----CCC---ccchhHHHHHH
Confidence 67899999999999999986543110 11 366666652110 110 000 1111222211
Q ss_pred --HHhHHHHHHHH-HhcCCCEEEecCCCCchHHHHHHh-CCCeEEEe
Q 044094 109 --MMLHPQADDLV-RQCQPDAIISDMNFPWTAEIARKY-GIPRLVYH 151 (279)
Q Consensus 109 --~~l~~~l~~ll-~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~ 151 (279)
..+...+..+. +..+||.|++-....++..+.+.+ ++|.+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 70 RGQAVARALLALRAKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 22333333332 235899999997666666666664 48888743
No 39
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.39 E-value=0.13 Score=46.99 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=63.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
++|+++.----||+.|.+ +++.|.++++++.++..... .+....- ...+.++.++. .++
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~l~~----~g~-------- 60 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP--RMQAAGC------ESLFDMEELAV----MGL-------- 60 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH--HHHhCCC------ccccCHHHhhh----ccH--------
Confidence 368888888889999999 99999998777777764332 2332100 00122222210 000
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEe-cCCCCch--HHHHHHhCCCeEEEec
Q 044094 94 AIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIIS-DMNFPWT--AEIARKYGIPRLVYHG 152 (279)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~-D~~~~~~--~~vA~~lgiP~v~f~t 152 (279)
...+..+.. .......+++++++.+||+|+. +.-..|. ...|++.|||.+.+..
T Consensus 61 ----~~~~~~~~~-~~~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~ 117 (380)
T PRK00025 61 ----VEVLPRLPR-LLKIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVS 117 (380)
T ss_pred ----HHHHHHHHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeC
Confidence 000111111 1123345667778889999765 4222354 3447889999887643
No 40
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.19 E-value=0.25 Score=43.61 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=28.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 22 MSPGHQIPMIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
=|.||+.=++.||+.|.++|++|+|++.....
T Consensus 12 iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 12 IGLGHVMRCLTLARALHAQGAEVAFACKPLPG 43 (279)
T ss_pred ccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 47899999999999999999999999876543
No 41
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=94.81 E-value=0.23 Score=45.02 Aligned_cols=107 Identities=14% Similarity=0.109 Sum_probs=63.5
Q ss_pred CCCCcEEEEEcC--CCCCChHHHHHHHHHHHhC--CCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCC
Q 044094 10 DHEQLHVFFVPF--MSPGHQIPMIDMARIFASR--GVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANL 85 (279)
Q Consensus 10 ~~~~~hvv~vp~--p~~GH~~P~l~La~~La~~--G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~l 85 (279)
.++.++|+|+.- .|-||+-=++.+|+.|+.. |++|+++|......-+. ....+.++.+|.-. ..
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~---------~~~gVd~V~LPsl~---k~ 73 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFP---------GPAGVDFVKLPSLI---KG 73 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCC---------CcccCceEecCceE---ec
Confidence 455568998875 6789999999999999986 99999998754432221 11348888887311 01
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHhH-HHHHHHHHhcCCCEEEecCCCC
Q 044094 86 PPNCENLDAIPSRDLSYNFSKAIMMLH-PQADDLVRQCQPDAIISDMNFP 134 (279)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~ll~~~~~d~vI~D~~~~ 134 (279)
.+|.-...+.. .+ ...+. .++ ..+..-.+..+||.+|+|.+=.
T Consensus 74 ~~G~~~~~d~~-~~-l~e~~----~~Rs~lil~t~~~fkPDi~IVd~~P~ 117 (400)
T COG4671 74 DNGEYGLVDLD-GD-LEETK----KLRSQLILSTAETFKPDIFIVDKFPF 117 (400)
T ss_pred CCCceeeeecC-CC-HHHHH----HHHHHHHHHHHHhcCCCEEEEecccc
Confidence 11210000110 01 12222 233 2333344557999999998644
No 42
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.23 E-value=0.049 Score=42.49 Aligned_cols=93 Identities=27% Similarity=0.413 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNFSKAIM 109 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 109 (279)
+.+|++.|+++||+||+++.......-. . ...++++..++.+.. +. .. .. ..+.
T Consensus 7 ~~~l~~~L~~~G~~V~v~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~----~~---~~------~~-~~~~---- 60 (160)
T PF13579_consen 7 VRELARALAARGHEVTVVTPQPDPEDDE-E-------EEDGVRVHRLPLPRR----PW---PL------RL-LRFL---- 60 (160)
T ss_dssp HHHHHHHHHHTT-EEEEEEE---GGG-S-E-------EETTEEEEEE--S-S----SS---GG------GH-CCHH----
T ss_pred HHHHHHHHHHCCCEEEEEecCCCCcccc-c-------ccCCceEEeccCCcc----ch---hh------hh-HHHH----
Confidence 6789999999999999998654432111 0 112377777764311 10 00 00 0111
Q ss_pred HhHHHHHHHH--HhcCCCEEEecCCCC-chHHHHH-HhCCCeEEEe
Q 044094 110 MLHPQADDLV--RQCQPDAIISDMNFP-WTAEIAR-KYGIPRLVYH 151 (279)
Q Consensus 110 ~l~~~l~~ll--~~~~~d~vI~D~~~~-~~~~vA~-~lgiP~v~f~ 151 (279)
..+.+++ ++.++|+|.+-.... +...+++ +.++|.+.-.
T Consensus 61 ---~~~~~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 61 ---RRLRRLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp ---HHHHHHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred ---HHHHHHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 1223344 557899888776432 3345555 8899987654
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=94.20 E-value=1 Score=39.73 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHH
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYN 103 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~ 103 (279)
-|+-.-...|++.|+++|++|+++++.......... ............ ..... . .. .....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~--~---~~--~~~~~ 75 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDPPRQDKE--------VIGVVVYGRPID----EVLRS--A---LP--RDLFH 75 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCCCCcccc--------cccceeeccccc----cccCC--C---ch--hhhhH
Confidence 488888999999999999999999876542211100 001111111000 00000 0 00 00011
Q ss_pred HHHH-HHHhHHHHHHHHHhcCCCEEEecCCCCch---HHHHHHhCCCeEEEe
Q 044094 104 FSKA-IMMLHPQADDLVRQCQPDAIISDMNFPWT---AEIARKYGIPRLVYH 151 (279)
Q Consensus 104 ~~~~-~~~l~~~l~~ll~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~ 151 (279)
.... ...+...+++++.+.++|.|++.....+. ...+++.|+|.+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~ 127 (359)
T cd03823 76 LSDYDNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTL 127 (359)
T ss_pred HHhccCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEE
Confidence 1111 12345566777777899999888765543 345788899988754
No 44
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.13 E-value=0.45 Score=43.25 Aligned_cols=106 Identities=18% Similarity=0.257 Sum_probs=57.2
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHH
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYN 103 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~ 103 (279)
-|+-..+.+|++.|+++||+|+++++.......... . ...++.+..++.. +... .........
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~------~~~~-----~~~~~~~~~ 83 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIV-E-----LAPGVRVVRVPAG------PAEY-----LPKEELWPY 83 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCcc-c-----cccceEEEecccc------cccC-----CChhhcchh
Confidence 378889999999999999999999865432111100 0 1123666655421 1100 000000001
Q ss_pred HHHHHHHhHHHHHHHHHhc--CCCEEEecCCC-Cc-hHHHHHHhCCCeEEE
Q 044094 104 FSKAIMMLHPQADDLVRQC--QPDAIISDMNF-PW-TAEIARKYGIPRLVY 150 (279)
Q Consensus 104 ~~~~~~~l~~~l~~ll~~~--~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f 150 (279)
+. .....+.+.+... ++|+|++.... .+ +...++++|+|++..
T Consensus 84 ~~----~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 84 LD----EFADDLLRFLRREGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HH----HHHHHHHHHHHhcCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 11 1111222334444 89999887533 23 466788999998754
No 45
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=93.59 E-value=1.1 Score=39.75 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=26.0
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
.|+-.-+..|++.|+++|++|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 59999999999999999999999986543
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=93.39 E-value=0.43 Score=45.22 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCC----C-CCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 11 HEQLHVFFVPFM----S-PGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 11 ~~~~hvv~vp~p----~-~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
.+++||+++.-| . -|=-+=+.+|++.|.++||+|+++++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 566799977322 2 2333567899999999999999998754
No 47
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=93.36 E-value=1.2 Score=34.33 Aligned_cols=99 Identities=17% Similarity=0.269 Sum_probs=57.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 044094 16 VFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAI 95 (279)
Q Consensus 16 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~ 95 (279)
||++.--..+| ..++++.|.++|++|++++.......... ..++.+..++.+ ..
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---------~~~i~~~~~~~~------------~k-- 55 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---------IEGIKVIRLPSP------------RK-- 55 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---------hCCeEEEEecCC------------CC--
Confidence 55555545555 56889999999999999998543221111 124777766421 00
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCC-ch-HH-HHHHhC-CCeEE
Q 044094 96 PSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFP-WT-AE-IARKYG-IPRLV 149 (279)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~-~~-~~-vA~~lg-iP~v~ 149 (279)
... .++. +. .+.+++.+.+||.|.+-...+ +. .. .++..| +|.+.
T Consensus 56 ---~~~-~~~~----~~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 56 ---SPL-NYIK----YF-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred ---ccH-HHHH----HH-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 001 1221 12 457778888999997766554 22 22 345666 66663
No 48
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=93.20 E-value=0.31 Score=43.25 Aligned_cols=29 Identities=10% Similarity=0.151 Sum_probs=26.2
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
-|+-+.+.+|++.|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 69999999999999999999999987643
No 49
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.58 E-value=2 Score=38.60 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=29.4
Q ss_pred EEEEEcCCC-CCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 15 HVFFVPFMS-PGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 15 hvv~vp~p~-~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+|+++.+|. -|.-.-+.+|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 456555544 4777889999999999999999998753
No 50
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=92.52 E-value=1.1 Score=39.52 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=28.1
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 20 PFMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 20 p~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
|....|+-.-...|++.|+++||+|+++++...
T Consensus 10 ~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 10 LPQVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred cCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 445679999999999999999999999987543
No 51
>PRK10307 putative glycosyl transferase; Provisional
Probab=92.32 E-value=2.2 Score=39.50 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCC
Q 044094 30 MIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~ 51 (279)
+.+|++.|.++||+|+++|+..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999763
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=91.48 E-value=2.2 Score=37.32 Aligned_cols=107 Identities=15% Similarity=0.269 Sum_probs=61.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCC
Q 044094 16 VFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAI 95 (279)
Q Consensus 16 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~ 95 (279)
|+++.....|+..-+.+|++.|.++|++|++++....... .. ...+++.+.++.. ..+ .
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~---~~------~~~~~~~~~~~~~------~~~------~ 60 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE---EL------EALGVKVIPIPLD------RRG------I 60 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc---cc------ccCCceEEecccc------ccc------c
Confidence 5655555788999999999999999999999987654322 00 1123566555421 000 0
Q ss_pred CCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCc-hHH-HHHHhCCCeEEEe
Q 044094 96 PSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPW-TAE-IARKYGIPRLVYH 151 (279)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~-~~~-vA~~lgiP~v~f~ 151 (279)
.....+. . ...+.+++++.++|.|++.....+ ... .++..+.+.++++
T Consensus 61 ---~~~~~~~-~----~~~~~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~ 110 (359)
T cd03808 61 ---NPFKDLK-A----LLRLYRLLRKERPDIVHTHTPKPGILGRLAARLAGVPKVIYT 110 (359)
T ss_pred ---ChHhHHH-H----HHHHHHHHHhcCCCEEEEccccchhHHHHHHHHcCCCCEEEE
Confidence 0011111 1 123445566678999988765443 233 3443666666554
No 53
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=89.58 E-value=7.6 Score=35.24 Aligned_cols=36 Identities=33% Similarity=0.462 Sum_probs=25.6
Q ss_pred EEEEE-cCCCCCC-hHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 15 HVFFV-PFMSPGH-QIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 15 hvv~v-p~p~~GH-~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
+|+++ |....|= -.-+.+||++|+++||+|+++|+.
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 45544 4433333 334699999999999999999874
No 54
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=88.17 E-value=4.8 Score=37.08 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 044094 25 GHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNF 104 (279)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~ 104 (279)
|--.-+.+|++.|+++||+|+++++......-... ...+++.+.+|.. ..... ... ..+
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~-------~~~~i~v~~~p~~----~~~~~----~~~------~~~ 73 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY-------LTNGLKVYYLPFV----VFYNQ----STL------PTF 73 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc-------ccCceeEEEecce----eccCC----ccc------cch
Confidence 45567899999999999999999875321110000 0123666666531 11110 000 011
Q ss_pred HHHHHHhHHHHHHHHHhcCCCEEEecCCC-Cc---hHHHHHHhCCCeEEE
Q 044094 105 SKAIMMLHPQADDLVRQCQPDAIISDMNF-PW---TAEIARKYGIPRLVY 150 (279)
Q Consensus 105 ~~~~~~l~~~l~~ll~~~~~d~vI~D~~~-~~---~~~vA~~lgiP~v~f 150 (279)
.. ....+++++.+.+||.|.+-... .+ +...++.+|+|.+..
T Consensus 74 ~~----~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 74 FG----TFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred hh----hHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 11 11234455666789988665432 22 345678899998764
No 55
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=87.98 E-value=5.2 Score=35.52 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=56.4
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHH
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYN 103 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~ 103 (279)
-|--.-..+||+.|+++||+|++++........ +. ...++.+.++.. .. ... .
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~---~~------~~~~~~~~~~~~-------~~----------~~~-~ 62 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAE---LE------AEGSRHIKLPFI-------SK----------NPL-R 62 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHH---HH------hcCCeEEEcccc-------cc----------chh-h
Confidence 355566889999999999999999865432111 11 012555544321 00 000 0
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCEEEecCC-CCch-HHHHHHhCCCeEEEecc
Q 044094 104 FSKAIMMLHPQADDLVRQCQPDAIISDMN-FPWT-AEIARKYGIPRLVYHGT 153 (279)
Q Consensus 104 ~~~~~~~l~~~l~~ll~~~~~d~vI~D~~-~~~~-~~vA~~lgiP~v~f~t~ 153 (279)
.... ...+.+++++.++|+|++... ..|. ...++.+|+|.+..+..
T Consensus 63 ~~~~----~~~l~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 110 (355)
T cd03819 63 ILLN----VARLRRLIREEKVDIVHARSRAPAWSAYLAARRTRPPFVTTVHG 110 (355)
T ss_pred hHHH----HHHHHHHHHHcCCCEEEECCCchhHHHHHHHHhcCCCEEEEeCC
Confidence 1111 112345566678999988753 3454 44567889998876543
No 56
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=87.51 E-value=9.8 Score=34.64 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=66.2
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 044094 26 HQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNFS 105 (279)
Q Consensus 26 H~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~ 105 (279)
|+.=+-++.++|-++||+|.+.+-... .+...+.. .++.+..+-. .+ . .....+.
T Consensus 12 hvhfFk~~I~eL~~~GheV~it~R~~~--~~~~LL~~------yg~~y~~iG~--------~g-~--------~~~~Kl~ 66 (335)
T PF04007_consen 12 HVHFFKNIIRELEKRGHEVLITARDKD--ETEELLDL------YGIDYIVIGK--------HG-D--------SLYGKLL 66 (335)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEeccc--hHHHHHHH------cCCCeEEEcC--------CC-C--------CHHHHHH
Confidence 888899999999999999988764432 22222211 2366655521 11 0 1122333
Q ss_pred HHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHH
Q 044094 106 KAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAA 165 (279)
Q Consensus 106 ~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~ 165 (279)
....+.. .+-+++.+.+||++|+= ....+..+|.-+|+|.+.|.=.--+.....+.+|
T Consensus 67 ~~~~R~~-~l~~~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~P 124 (335)
T PF04007_consen 67 ESIERQY-KLLKLIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLP 124 (335)
T ss_pred HHHHHHH-HHHHHHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehh
Confidence 3222222 23344556789999963 3455678999999999999766544333333333
No 57
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=87.34 E-value=7.2 Score=36.61 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHhCCC--eEEEEcCCCChhhh-hhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHH
Q 044094 27 QIPMIDMARIFASRGV--KATILTTPLNISRF-ESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYN 103 (279)
Q Consensus 27 ~~P~l~La~~La~~G~--~VT~vtt~~~~~~~-~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~ 103 (279)
-.-+.+||++|+++|| +|+++|........ ......... ...+++++.++.. +.... . ...
T Consensus 29 ~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~-~~~gv~v~r~~~~------~~~~~-----~----~~~ 92 (439)
T TIGR02472 29 TKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIER-IAPGARIVRLPFG------PRRYL-----R----KEL 92 (439)
T ss_pred chHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeE-eCCCcEEEEecCC------CCCCc-----C----hhh
Confidence 3457899999999997 99999853211000 000000000 1123666666531 11000 0 011
Q ss_pred HHHHHHHhHHHHHHHHHh--cCCCEEEecCCC-Cc-hHHHHHHhCCCeEEEe
Q 044094 104 FSKAIMMLHPQADDLVRQ--CQPDAIISDMNF-PW-TAEIARKYGIPRLVYH 151 (279)
Q Consensus 104 ~~~~~~~l~~~l~~ll~~--~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~f~ 151 (279)
+...+..+...+.+++++ .+||+|-+-... .+ +..+++.+|+|+|...
T Consensus 93 ~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 93 LWPYLDELADNLLQHLRQQGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred hhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 111112233334445544 369999886532 22 2456778999987653
No 58
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=84.66 E-value=3 Score=32.76 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=41.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
+++++||+...++-+|-.-..-++..|.++|++|+++......+.+..
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~ 48 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFID 48 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 357799999999999999999999999999999999987666555544
No 59
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=84.44 E-value=11 Score=33.01 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=22.9
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 25 GHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
|--.-..+|++.|.++||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 445668999999999999999998654
No 60
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=84.18 E-value=15 Score=38.53 Aligned_cols=42 Identities=17% Similarity=0.353 Sum_probs=31.4
Q ss_pred CCCCcEEEEEcCCCC---------------CChHHHHHHHHHHHhCC--CeEEEEcCCC
Q 044094 10 DHEQLHVFFVPFMSP---------------GHQIPMIDMARIFASRG--VKATILTTPL 51 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~---------------GH~~P~l~La~~La~~G--~~VT~vtt~~ 51 (279)
..++..|+++..-+- |+..=.++||++|+++| ++|.++|-..
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~ 224 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQV 224 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence 345678888765332 46666799999999998 8999998643
No 61
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=84.18 E-value=27 Score=35.58 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=64.6
Q ss_pred cEEEEEcCCC-------------CCChHHHHHHHHH--------HHhCCC----eEEEEcCCCChhhhh---hccccCCC
Q 044094 14 LHVFFVPFMS-------------PGHQIPMIDMARI--------FASRGV----KATILTTPLNISRFE---SSINRDDY 65 (279)
Q Consensus 14 ~hvv~vp~p~-------------~GH~~P~l~La~~--------La~~G~----~VT~vtt~~~~~~~~---~~~~~~~~ 65 (279)
.+|+++..-+ -|+..=.++|||+ |+++|| +|+++|--.....-. ..+....
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~- 334 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVY- 334 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcccccccccccccc-
Confidence 4777766554 4677778888886 568999 777987533211000 0000000
Q ss_pred CCCCCeEEEEecCCCCCCCCCCCCCCCCC-CCCcchHHHHHHHHHHhHHHHHH-HHHh--cCCCEEEecCCCC-ch-HHH
Q 044094 66 HHHNPIKLLLLNFPSTAANLPPNCENLDA-IPSRDLSYNFSKAIMMLHPQADD-LVRQ--CQPDAIISDMNFP-WT-AEI 139 (279)
Q Consensus 66 ~~~~~i~~~~lp~~~~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~-ll~~--~~~d~vI~D~~~~-~~-~~v 139 (279)
...+++++.+|+.+ +.+. .... ++. ..++..+..+...+.+ +.++ .+||+|++-...+ ++ ..+
T Consensus 335 -~~~~~~I~rvp~g~-----~~~~-~~~~~i~k----~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~glva~ll 403 (784)
T TIGR02470 335 -GTEHAWILRVPFRT-----ENGI-ILRNWISR----FEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGNLVASLL 403 (784)
T ss_pred -CCCceEEEEecCCC-----Cccc-ccccccCH----HHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchHHHHHHH
Confidence 11357777777531 1110 0000 111 1223223333333333 2222 4799999977554 43 678
Q ss_pred HHHhCCCeEE
Q 044094 140 ARKYGIPRLV 149 (279)
Q Consensus 140 A~~lgiP~v~ 149 (279)
|+++|||.+.
T Consensus 404 a~~lgVP~v~ 413 (784)
T TIGR02470 404 ARKLGVTQCT 413 (784)
T ss_pred HHhcCCCEEE
Confidence 9999999553
No 62
>PLN00142 sucrose synthase
Probab=83.67 E-value=9.6 Score=38.89 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=23.6
Q ss_pred cCCCEEEecCCCC-ch-HHHHHHhCCCeEEEe
Q 044094 122 CQPDAIISDMNFP-WT-AEIARKYGIPRLVYH 151 (279)
Q Consensus 122 ~~~d~vI~D~~~~-~~-~~vA~~lgiP~v~f~ 151 (279)
.+||+|++-...+ ++ ..+|+++|||.+...
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~ 438 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIA 438 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEc
Confidence 4699999997665 44 788999999988643
No 63
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=82.85 E-value=23 Score=28.95 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=29.5
Q ss_pred hHHHHHHHHHh-cCCCEEEecCCCCchHHHHHHh-CCCeEEEec
Q 044094 111 LHPQADDLVRQ-CQPDAIISDMNFPWTAEIARKY-GIPRLVYHG 152 (279)
Q Consensus 111 l~~~l~~ll~~-~~~d~vI~D~~~~~~~~vA~~l-giP~v~f~t 152 (279)
....+.+|.++ ..||.||.-.-.+.+.-+-.-+ ++|.+.|.-
T Consensus 53 v~~a~~~L~~~Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 53 VARAARQLRAQGFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred HHHHHHHHHHcCCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 34444554444 6799999997766677788888 888887653
No 64
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=82.79 E-value=1.5 Score=38.79 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=32.6
Q ss_pred EEEEEc----CCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 15 HVFFVP----FMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 15 hvv~vp----~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
||+++. --|.||+.=++.||+.|.++|+.++|++...+..
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 455543 3578999999999999999999999999876443
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.75 E-value=20 Score=31.58 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
.-|.-.-+.+|++.|.++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 558888899999999999999999987654
No 66
>PLN02275 transferase, transferring glycosyl groups
Probab=82.37 E-value=39 Score=30.79 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEcCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGV-KATILTTPL 51 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~-~VT~vtt~~ 51 (279)
..+.||++. +-.|.---|..++++|+++|+ +||+++...
T Consensus 4 ~~~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~ 43 (371)
T PLN02275 4 RGRAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGG 43 (371)
T ss_pred ccEEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecC
Confidence 344555554 777888889999999999875 799997644
No 67
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=82.05 E-value=9.8 Score=35.38 Aligned_cols=100 Identities=16% Similarity=0.242 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRG--VKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENL 92 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G--~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~ 92 (279)
.++-+-..+.|.++-...|+++|.+++ ++|.+.++......+.... .+..+..+.+|. +
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~------~~~~~~~~~~P~---------d---- 111 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQAL------FGDDVEHRYLPY---------D---- 111 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHh------cCCCceEEEecC---------C----
Confidence 456677788899999999999998876 4444333222222222110 011244444431 0
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCch--HHHHHHhCCCeEEEe
Q 044094 93 DAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWT--AEIARKYGIPRLVYH 151 (279)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~ 151 (279)
.. ..++++++..+||+|+.-..-.|. ...+++.|+|.+...
T Consensus 112 -------~~-----------~~~~~~l~~~~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 112 -------LP-----------GAVRRFLRFWRPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred -------cH-----------HHHHHHHHhhCCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 00 123455677899988754333454 455789999998764
No 68
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=81.27 E-value=20 Score=32.72 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
.-|.-.=..+||++|+++||+||++++..
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~ 47 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRAT 47 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEeccc
Confidence 45677889999999999999999998754
No 69
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=80.46 E-value=18 Score=31.35 Aligned_cols=102 Identities=23% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHH
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYN 103 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~ 103 (279)
-|+-.-+..|++.|.+.|++|++++............ . ..... .. .. .. . .. ..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~-------~-~~~~~---------~~-~~---~~---~-~~-~~ 67 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEV-------G-GIVVV---------RP-PP---LL---R-VR-RL 67 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeee-------c-Cccee---------cC-Cc---cc---c-cc-hh
Confidence 6899999999999999999999998764321110000 0 00000 00 00 00 0 00 00
Q ss_pred HHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchH--HHHHHhCCCeEEEecc
Q 044094 104 FSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTA--EIARKYGIPRLVYHGT 153 (279)
Q Consensus 104 ~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~--~vA~~lgiP~v~f~t~ 153 (279)
.. .......+..++...++|.|+......+.. ..+...++|.+...-.
T Consensus 68 ~~--~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 117 (374)
T cd03801 68 LL--LLLLALRLRRLLRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHG 117 (374)
T ss_pred HH--HHHHHHHHHHHhhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEecc
Confidence 00 111223345556667899998887665543 5788899998876443
No 70
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=80.14 E-value=2.7 Score=38.47 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 11 HEQLHVFFVPFM-SPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 11 ~~~~hvv~vp~p-~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
.++++|+++..- +.||..+...|++.|.++|++|+++..
T Consensus 2 ~~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d 41 (380)
T PRK13609 2 IKNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCD 41 (380)
T ss_pred CCCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 345678877664 459999999999999999998766643
No 71
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=80.09 E-value=22 Score=31.43 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
-|=-.=..+|++.|.++||+|++++....
T Consensus 15 gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 15 GGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred CcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 34455578999999999999999987543
No 72
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=79.71 E-value=13 Score=32.07 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
-|...-++.|++.|+++|++|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 46667788999999999999999987654
No 73
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.76 E-value=4.7 Score=30.40 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
+||+...++-.|-..+.-++..|..+|++|+++......+.+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~ 43 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIV 43 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 4889999999999999999999999999998886554444443
No 74
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=78.75 E-value=2.2 Score=33.45 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=21.5
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 25 GHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
|=-.-+++|++.|+++||+||+++...
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 555678999999999999999997653
No 75
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=75.11 E-value=37 Score=29.48 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
..|+-.-+..+++.|.+.|++|++++....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 478888899999999999999999987654
No 76
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=75.00 E-value=16 Score=32.36 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 22 MSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
..-|.-.-+.+|++.|.++|++|++++....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 4568888899999999999999999987644
No 77
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=73.87 E-value=21 Score=26.63 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 28 IPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
.=++++|++|...|+++ +.|+.....++.
T Consensus 12 ~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~ 40 (112)
T cd00532 12 AMLVDLAPKLSSDGFPL--FATGGTSRVLAD 40 (112)
T ss_pred HHHHHHHHHHHHCCCEE--EECcHHHHHHHH
Confidence 34789999999999976 566666666554
No 78
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=69.06 E-value=33 Score=25.34 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 044094 26 HQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNFS 105 (279)
Q Consensus 26 H~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~ 105 (279)
+-.=++++++.|.+.|+++ +.|+.....+.. .+ +....+.. .+.+
T Consensus 11 ~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l~~--------~g--i~~~~v~~------~~~~----------------- 55 (110)
T cd01424 11 DKPEAVEIAKRLAELGFKL--VATEGTAKYLQE--------AG--IPVEVVNK------VSEG----------------- 55 (110)
T ss_pred cHhHHHHHHHHHHHCCCEE--EEchHHHHHHHH--------cC--CeEEEEee------cCCC-----------------
Confidence 4445889999999999986 456666665554 23 44433321 0110
Q ss_pred HHHHHhHHHHHHHHHhcCCCEEEecCC-------CCchHHHHHHhCCCeE
Q 044094 106 KAIMMLHPQADDLVRQCQPDAIISDMN-------FPWTAEIARKYGIPRL 148 (279)
Q Consensus 106 ~~~~~l~~~l~~ll~~~~~d~vI~D~~-------~~~~~~vA~~lgiP~v 148 (279)
.+.+.+++++.++|+||.-.- ..+....|-++|||.+
T Consensus 56 ------~~~i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~ 99 (110)
T cd01424 56 ------RPNIVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYF 99 (110)
T ss_pred ------chhHHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEE
Confidence 012334455678898888421 2456788999999988
No 79
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=68.19 E-value=57 Score=28.29 Aligned_cols=32 Identities=3% Similarity=0.082 Sum_probs=27.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 21 FMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 21 ~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+..-|+-..+..|++.|.+.|++|.+++....
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~ 40 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTDR 40 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCcc
Confidence 34468999999999999999999999986543
No 80
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=66.76 E-value=9.4 Score=33.49 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
.-|+..-..+|++.|+++||+|+++++...
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 459999999999999999999999987643
No 81
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=66.24 E-value=6 Score=36.93 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
-|++=-=|+.|--.=+||++.+|+++| +|-+++.+....+++
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qik 136 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIK 136 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHH
Confidence 355555699999999999999999999 999999988776654
No 82
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=65.91 E-value=31 Score=30.03 Aligned_cols=98 Identities=19% Similarity=0.300 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNFSKAIM 109 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 109 (279)
+-.|++.|. .+.+||++.+..+++-....+.- ...++...+.. ..+ .....|. -...
T Consensus 16 i~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl-----~~Plr~~~~~~--------~~~-av~GTPa----DCV~---- 72 (252)
T COG0496 16 IRALARALR-EGADVTVVAPDREQSGASHSLTL-----HEPLRVRQVDN--------GAY-AVNGTPA----DCVI---- 72 (252)
T ss_pred HHHHHHHHh-hCCCEEEEccCCCCccccccccc-----ccCceeeEecc--------ceE-EecCChH----HHHH----
Confidence 345677777 89999999988775543322210 11133332210 000 0011111 1111
Q ss_pred HhHHHHHHHHHhcCCCEEEecCCCC----------c---hHHHHHHhCCCeEEEecc
Q 044094 110 MLHPQADDLVRQCQPDAIISDMNFP----------W---TAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~D~~~~----------~---~~~vA~~lgiP~v~f~t~ 153 (279)
-.+..++.+..||+||+..-.+ . ++.=|.-+|||.+.++-.
T Consensus 73 ---lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 73 ---LGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ---HHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 1234455556699999865432 2 244477899999998765
No 83
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=65.83 E-value=55 Score=28.57 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCC
Q 044094 30 MIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~ 52 (279)
-.+|+++|.++|++|+..+....
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCC
Confidence 57899999999999988776544
No 84
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=64.63 E-value=96 Score=27.82 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=57.1
Q ss_pred EEE-EEcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 044094 15 HVF-FVPFMSP-GHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENL 92 (279)
Q Consensus 15 hvv-~vp~p~~-GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~ 92 (279)
+|+ +++.... |--+-++.|++.|.++|+++++++..... .+..... ..+++++.++. ...
T Consensus 3 ~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~~~~~------~~~i~~~~~~~-------~~~---- 64 (374)
T TIGR03088 3 LIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFRKRIQ------RPDVAFYALHK-------QPG---- 64 (374)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhHHHHH------hcCceEEEeCC-------CCC----
Confidence 444 5555554 44588999999999999999888743221 2221111 12366665541 000
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCC-chHHHHHHhCCCeEE
Q 044094 93 DAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFP-WTAEIARKYGIPRLV 149 (279)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~-~~~~vA~~lgiP~v~ 149 (279)
. . +..+ ..+.+++++.+||.|-+-.... ++..++...|+|..+
T Consensus 65 ---~--~-~~~~--------~~l~~~l~~~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 65 ---K--D-VAVY--------PQLYRLLRQLRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred ---C--C-hHHH--------HHHHHHHHHhCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 0 1 1111 1234556667899887654322 234556778888643
No 85
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=64.44 E-value=18 Score=30.10 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=39.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
.+.+||+.+.++-.|-....=++..|..+|++|+++......+.+..
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~ 127 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVE 127 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 35689999999999999999999999999999998876555555544
No 86
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=63.51 E-value=95 Score=28.93 Aligned_cols=109 Identities=21% Similarity=0.287 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhC--CCeEEEEcCCCChhh---h---hhccccCCCCCCCCeEEEEec-CCCCCCCCCCCCCCCCCCCCc
Q 044094 28 IPMIDMARIFASR--GVKATILTTPLNISR---F---ESSINRDDYHHHNPIKLLLLN-FPSTAANLPPNCENLDAIPSR 98 (279)
Q Consensus 28 ~P~l~La~~La~~--G~~VT~vtt~~~~~~---~---~~~~~~~~~~~~~~i~~~~lp-~~~~~~~lp~~~~~~~~~~~~ 98 (279)
--+.+.++.|.++ |++|+++|+...+.+ + .+..... ....+.++.+. .- ..++.. . .+.
T Consensus 18 rvl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~---~~~~~~~~~~~~~~---~~~~~~--~---~~r- 85 (419)
T cd03806 18 RVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIE---LDRPRIVFFLLKYR---KLVEAS--T---YPR- 85 (419)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCee---cCCCceEEEEecce---eeeccc--c---CCc-
Confidence 3467788888887 899999998765432 1 1111000 01124544331 10 112221 0 111
Q ss_pred chHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHH-hCCCeEEEe
Q 044094 99 DLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARK-YGIPRLVYH 151 (279)
Q Consensus 99 ~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~-lgiP~v~f~ 151 (279)
+..+......+...++.+. +.+||++|.+.-.+.+.-+++. .++|.+.+.
T Consensus 86 --~~~~~~~~~~~~~~~~~~~-~~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~ 136 (419)
T cd03806 86 --FTLLGQALGSMILGLEALL-KLVPDIFIDTMGYPFTYPLVRLLGGCPVGAYV 136 (419)
T ss_pred --eeeHHHHHHHHHHHHHHHH-hcCCCEEEEcCCcccHHHHHHHhcCCeEEEEe
Confidence 1112222223333344332 3479988888767766666665 478887763
No 87
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=63.11 E-value=21 Score=29.74 Aligned_cols=48 Identities=13% Similarity=-0.004 Sum_probs=40.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhc
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESS 59 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~ 59 (279)
.+.+||+.+.++-.|-....=++..|.++|++|+++......+.+...
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~ 130 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEK 130 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHH
Confidence 456999999999999999999999999999999999877666655443
No 88
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=61.96 E-value=19 Score=26.82 Aligned_cols=43 Identities=14% Similarity=0.192 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
++++...+..-|-.-++-++..|.++|++|.++-.....+.+.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~ 44 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVPPEELV 44 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHH
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHH
Confidence 7899999999999999999999999999999996554434443
No 89
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=61.44 E-value=5.7 Score=36.53 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=27.0
Q ss_pred EcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 19 VPFMSP-GHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 19 vp~p~~-GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+|||.. |.-+=+.+|+|.|+++ |+||+++-..+
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~ 41 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDD 41 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCC
Confidence 577655 8899999999999776 89999987543
No 90
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=60.29 E-value=14 Score=32.84 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=30.5
Q ss_pred EEEEEcC-CC-CCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 15 HVFFVPF-MS-PGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 15 hvv~vp~-p~-~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+|+++.. +. -|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 5665544 34 58899999999999999999999986653
No 91
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=59.16 E-value=86 Score=26.31 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=29.8
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 17 FFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 17 v~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+++.....|-..-+++-+++..-+|-+|.++++...
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 455566679999999999999999999999987543
No 92
>PRK06321 replicative DNA helicase; Provisional
Probab=58.67 E-value=1.4e+02 Score=28.56 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=35.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEcCCCChhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFAS-RGVKATILTTPLNISRFE 57 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~-~G~~VT~vtt~~~~~~~~ 57 (279)
=+++-.-|+.|=..=++++|+..+. .|..|.|++.+-...++.
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~ 271 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLI 271 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHH
Confidence 3566778999999999999999984 599999998887665543
No 93
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=58.18 E-value=11 Score=33.34 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=25.0
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
.-|+-..+.+|++.|.++||+|++++..
T Consensus 11 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~ 38 (360)
T cd04951 11 LGGAEKQVVDLADQFVAKGHQVAIISLT 38 (360)
T ss_pred CCCHHHHHHHHHHhcccCCceEEEEEEe
Confidence 3688999999999999999999999754
No 94
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=56.89 E-value=31 Score=29.18 Aligned_cols=48 Identities=13% Similarity=0.128 Sum_probs=40.6
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhc
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESS 59 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~ 59 (279)
.+.+|++...++-.|-+...=++..|..+|++|+++......+.+...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~ 134 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEA 134 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHH
Confidence 457999999999999999999999999999999999876655555443
No 95
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.53 E-value=27 Score=26.48 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
|||+...++-.|-.-..-++..|..+|++|++.......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 588999999999999999999999999999999876554444
No 96
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=56.15 E-value=18 Score=29.32 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
.-||-.....|++.|.++|++|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 66999999999999999999999998
No 97
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=55.81 E-value=15 Score=32.05 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=39.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
..-++++--||.|=..=...++.+|..+|++|+|++++.....++.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 3478899999999888899999999988999999999887776655
No 98
>PRK09165 replicative DNA helicase; Provisional
Probab=55.50 E-value=1.2e+02 Score=29.20 Aligned_cols=44 Identities=11% Similarity=0.092 Sum_probs=35.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC---------------CCeEEEEcCCCChhhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASR---------------GVKATILTTPLNISRFES 58 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~---------------G~~VT~vtt~~~~~~~~~ 58 (279)
=+++..-|+.|=..=++++|...+.+ |..|.|++.+-...++..
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~ 277 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLAT 277 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHH
Confidence 35677889999999999999998753 788999998877665543
No 99
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=55.04 E-value=76 Score=30.39 Aligned_cols=45 Identities=4% Similarity=0.017 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
.-+++.--|+.|=.+=.++++...+++|.++.+++.+...+++..
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 357788899999999999999999999999999999888776654
No 100
>PLN02846 digalactosyldiacylglycerol synthase
Probab=54.85 E-value=20 Score=34.15 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=30.4
Q ss_pred CCCcEEEEEcC---CCC-CChHHHHHHHHHHHhCC-CeEEEEcCC
Q 044094 11 HEQLHVFFVPF---MSP-GHQIPMIDMARIFASRG-VKATILTTP 50 (279)
Q Consensus 11 ~~~~hvv~vp~---p~~-GH~~P~l~La~~La~~G-~~VT~vtt~ 50 (279)
.+++||++|.- |-. |=.+-.+.++..|+++| |+|+++.+.
T Consensus 2 ~~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~ 46 (462)
T PLN02846 2 QKKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPW 46 (462)
T ss_pred CCCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecC
Confidence 45678998864 333 66567788888999999 799999764
No 101
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=51.60 E-value=1.8e+02 Score=27.41 Aligned_cols=99 Identities=18% Similarity=0.353 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEc-CCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASR--GVKATILT-TPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCEN 91 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~vt-t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~ 91 (279)
-.+-+-..+.|=++-.+.|.++|.++ +..|++-| |+.-.+.++... +..+...-+|. +
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~-------~~~v~h~YlP~---------D--- 110 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF-------GDSVIHQYLPL---------D--- 110 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc-------CCCeEEEecCc---------C---
Confidence 46677788899999999999999998 88888776 444444444332 22244444442 0
Q ss_pred CCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCE-EEecCCCCch--HHHHHHhCCCeEEEec
Q 044094 92 LDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDA-IISDMNFPWT--AEIARKYGIPRLVYHG 152 (279)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~-vI~D~~~~~~--~~vA~~lgiP~v~f~t 152 (279)
. ...++++++.++||+ ||.+. --|- ..-+++.|+|.+....
T Consensus 111 --------~-----------~~~v~rFl~~~~P~l~Ii~Et-ElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 111 --------L-----------PIAVRRFLRKWRPKLLIIMET-ELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred --------c-----------hHHHHHHHHhcCCCEEEEEec-cccHHHHHHHHHcCCCEEEEee
Confidence 0 011335566678885 55554 4454 6678999999998654
No 102
>PRK07773 replicative DNA helicase; Validated
Probab=51.48 E-value=1.6e+02 Score=30.65 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCChhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASR-GVKATILTTPLNISRFE 57 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~~~~~~ 57 (279)
=+++-.-|+.|=..=.+++|...+.+ |..|.|++.+-...++.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 36677889999999999999999864 88999999887766553
No 103
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=51.13 E-value=51 Score=28.71 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=33.2
Q ss_pred HHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEeccchHHHHHH
Q 044094 117 DLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGTCCFSLSLS 161 (279)
Q Consensus 117 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~~a~~~~~~ 161 (279)
+.+++.++.||+++....- +..+|++.|++.+.+-+.+...+.+|
T Consensus 211 ~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~m 257 (266)
T cd01018 211 DLAKEKGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEENL 257 (266)
T ss_pred HHHHHcCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHHH
Confidence 4455678999999987763 57899999999988876654444333
No 104
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=50.65 E-value=1e+02 Score=26.96 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=22.2
Q ss_pred cCCCEEEecC----------CCCc---hHHHHHHhCCCeEEEec
Q 044094 122 CQPDAIISDM----------NFPW---TAEIARKYGIPRLVYHG 152 (279)
Q Consensus 122 ~~~d~vI~D~----------~~~~---~~~vA~~lgiP~v~f~t 152 (279)
.+||+||+.. +.+. ++.-|.-+|||.+.++.
T Consensus 86 ~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 86 APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 5799999854 3332 24557789999999985
No 105
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=50.51 E-value=16 Score=31.20 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 26 HQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 26 H~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
|+..|-++|..|.++|++|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67899999999999999999998774
No 106
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=50.18 E-value=82 Score=25.92 Aligned_cols=99 Identities=14% Similarity=0.225 Sum_probs=46.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCCChhh-hhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASR--GVKATILTTPLNISR-FESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCEN 91 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~vtt~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~ 91 (279)
.++-+-..+.|=++-...|+++|.++ |++|.+-++...... ..+... ..+....+|.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~-------~~v~~~~~P~------------- 81 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP-------DRVDVQYLPL------------- 81 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G-------GG-SEEE----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC-------CCeEEEEeCc-------------
Confidence 45556677789999999999999986 888877766444333 222211 1132332331
Q ss_pred CCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCch--HHHHHHhCCCeEEEe
Q 044094 92 LDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWT--AEIARKYGIPRLVYH 151 (279)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~ 151 (279)
|. ...++++++.++|+++|.=---.|- ...|++.|||.+...
T Consensus 82 -------D~-----------~~~~~rfl~~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 82 -------DF-----------PWAVRRFLDHWRPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp -------SS-----------HHHHHHHHHHH--SEEEEES----HHHHHH-----S-EEEEE
T ss_pred -------cC-----------HHHHHHHHHHhCCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 10 0112345666788866555445564 677889999988754
No 107
>PRK00654 glgA glycogen synthase; Provisional
Probab=49.30 E-value=26 Score=33.19 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=23.0
Q ss_pred cCCCCCCh-HHHHHHHHHHHhCCCeEEEEcCC
Q 044094 20 PFMSPGHQ-IPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 20 p~p~~GH~-~P~l~La~~La~~G~~VT~vtt~ 50 (279)
|+.-.|=+ .=.-.|+++|+++||+|+++++.
T Consensus 12 P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 12 PLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred cCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 33324444 44578999999999999999864
No 108
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=49.14 E-value=31 Score=29.66 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=26.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 22 MSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+.-|+-.-+.+|++.|.+.|++|++++....
T Consensus 10 ~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 10 GGGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred cCCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 3678888999999999999999999987543
No 109
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=48.99 E-value=53 Score=26.30 Aligned_cols=44 Identities=27% Similarity=0.420 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHhcCCCEEEecCCCCchH--H-H--HHHh-CCCeEEEecc
Q 044094 110 MLHPQADDLVRQCQPDAIISDMNFPWTA--E-I--ARKY-GIPRLVYHGT 153 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~D~~~~~~~--~-v--A~~l-giP~v~f~t~ 153 (279)
.+.+.+.+++++.+||+||+-..+.... . + ...+ ++|.+...|=
T Consensus 76 ~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 76 LFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 4456788888899999999998764322 2 1 2223 4676666554
No 110
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=48.12 E-value=1.3e+02 Score=25.56 Aligned_cols=44 Identities=9% Similarity=-0.098 Sum_probs=37.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
.-+++.--|+.|-..=.++++..-+++|-.+.|++++.....+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~ 65 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVR 65 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHH
Confidence 35778889999999999999988778999999999988766543
No 111
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=48.00 E-value=30 Score=26.48 Aligned_cols=47 Identities=21% Similarity=0.208 Sum_probs=40.8
Q ss_pred CCCCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 5 STKTHDHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 5 ~~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
|++-++..+..+-+.|..|.+.+.|.-++-++|.+.-.++.++|+..
T Consensus 38 sAkRD~~g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqp 84 (144)
T PF10657_consen 38 SAKRDRYGKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQP 84 (144)
T ss_pred eeecccCCceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCC
Confidence 44555667789999999999999999999999999989999998754
No 112
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=47.46 E-value=32 Score=30.55 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=33.7
Q ss_pred HhHHHHHHHHHh-cCCCEEEecCCCC-----chHHHHHHhCCCeEEEecc
Q 044094 110 MLHPQADDLVRQ-CQPDAIISDMNFP-----WTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 110 ~l~~~l~~ll~~-~~~d~vI~D~~~~-----~~~~vA~~lgiP~v~f~t~ 153 (279)
.+++.++++|++ .++-+||-|.|.- -..+.|.+.+||+|.+.-.
T Consensus 134 ~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 134 HIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 456677777765 6889999999865 2467788999999998554
No 113
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=47.36 E-value=26 Score=26.82 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=29.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
||++.-..+.+=+. ..++.++|.++|++|.++.++.-.+.+
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 56665555544444 999999999999999999887544333
No 114
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=46.70 E-value=35 Score=28.27 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=19.3
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 30 MIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
.=+|+.+|+++|++||+.+.....
T Consensus 23 ve~L~~~l~~~g~~v~Vyc~~~~~ 46 (185)
T PF09314_consen 23 VEELAPRLVSKGIDVTVYCRSDYY 46 (185)
T ss_pred HHHHHHHHhcCCceEEEEEccCCC
Confidence 457888999999999999876543
No 115
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.48 E-value=2.4e+02 Score=26.08 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=44.0
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC--hhhhhhccccCCCCCCCCeEEEEecC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLN--ISRFESSINRDDYHHHNPIKLLLLNF 78 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~--~~~~~~~~~~~~~~~~~~i~~~~lp~ 78 (279)
.++.|++++-..-.||--=|--=|.-||..|++|+++.--.. .+.+. ++++|+++.++.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~---------~hprI~ih~m~~ 70 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL---------NHPRIRIHGMPN 70 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh---------cCCceEEEeCCC
Confidence 445688888888899988888889999999999999864322 22222 246799998874
No 116
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=46.29 E-value=1.6 Score=41.64 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=7.2
Q ss_pred CceEEeccccCC
Q 044094 245 KVVYPVGPVSLF 256 (279)
Q Consensus 245 ~~v~~VGPl~~~ 256 (279)
+++..||+++..
T Consensus 246 p~v~~vGgl~~~ 257 (500)
T PF00201_consen 246 PNVVEVGGLHIK 257 (500)
T ss_dssp CTSTTGCGC-S-
T ss_pred hcccccCccccc
Confidence 457778887543
No 117
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=46.29 E-value=35 Score=32.03 Aligned_cols=34 Identities=21% Similarity=0.450 Sum_probs=24.9
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEe
Q 044094 115 ADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYH 151 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 151 (279)
+++++++.+||++|.+. +...+|+++|+|.+.+.
T Consensus 362 ~~~~i~~~~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 362 VGDMIARTEPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred HHHHHHhhCCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 44455556788888886 46678899999987653
No 118
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=46.09 E-value=1.3e+02 Score=24.86 Aligned_cols=61 Identities=15% Similarity=0.173 Sum_probs=41.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC---CCChhhhhhccccCCCCCCCCeEEEEec
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT---PLNISRFESSINRDDYHHHNPIKLLLLN 77 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt---~~~~~~~~~~~~~~~~~~~~~i~~~~lp 77 (279)
-|+|+..++.-|--=+.+.+++|++.|.+|.++.. ..+.++++......+ .+.+=+++.+|
T Consensus 110 ivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~--~~~~s~~~~~~ 173 (187)
T cd01452 110 IVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVN--GKDGSHLVSVP 173 (187)
T ss_pred EEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhc--CCCCceEEEeC
Confidence 37788888888877788999999999999998864 345555554433221 11234566665
No 119
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=46.05 E-value=1.8e+02 Score=26.95 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=23.2
Q ss_pred HHhc--CCCEEEecCCCCchHHHHHHhCCCeEEEec
Q 044094 119 VRQC--QPDAIISDMNFPWTAEIARKYGIPRLVYHG 152 (279)
Q Consensus 119 l~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t 152 (279)
+++. +||+||.=--+. ....|...|+|.+++-|
T Consensus 87 ~~~~~~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~ 121 (396)
T TIGR03492 87 LRKWAKKGDLIVAVGDIV-PLLFAWLSGKPYAFVGT 121 (396)
T ss_pred HHHHhhcCCEEEEECcHH-HHHHHHHcCCCceEEEe
Confidence 4455 899887644333 77788999999998433
No 120
>PRK04328 hypothetical protein; Provisional
Probab=45.87 E-value=1.9e+02 Score=24.77 Aligned_cols=44 Identities=9% Similarity=-0.093 Sum_probs=36.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
.-+++.--|+.|-.+=.++++..-+++|..+.|++++.....+.
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~ 67 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVR 67 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHH
Confidence 35667888999999999999988888899999999987766543
No 121
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.72 E-value=52 Score=26.08 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=36.5
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
.++++|++.+...-||=.=.--+++.|++.|++|........
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~t 51 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQT 51 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCC
Confidence 578999999999889999999999999999999988755443
No 122
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=45.41 E-value=80 Score=27.97 Aligned_cols=20 Identities=10% Similarity=0.265 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCeEEEEcCC
Q 044094 31 IDMARIFASRGVKATILTTP 50 (279)
Q Consensus 31 l~La~~La~~G~~VT~vtt~ 50 (279)
+.|++.|+++|++|..+..+
T Consensus 14 ~~~~~~l~~~g~~v~~~g~~ 33 (287)
T TIGR02853 14 LELIRKLEELDAKISLIGFD 33 (287)
T ss_pred HHHHHHHHHCCCEEEEEecc
Confidence 67899999999999999765
No 123
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=45.05 E-value=2.1e+02 Score=25.76 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 22 MSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
.+-|=-.-+++|++.|.+.||+|++++..
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g~~v~~~~~~ 38 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLGVDTRWEVIK 38 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCceEEecC
Confidence 34455666779999999999999998764
No 124
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=43.99 E-value=27 Score=26.88 Aligned_cols=42 Identities=26% Similarity=0.231 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhcCCCEEEecCCCC--chHHHHHHhCCCeEEEec
Q 044094 111 LHPQADDLVRQCQPDAIISDMNFP--WTAEIARKYGIPRLVYHG 152 (279)
Q Consensus 111 l~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~t 152 (279)
..+.+++++....|.+||++-+-. +..++|++.|+|....--
T Consensus 70 r~~~l~~l~~~~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 70 RKERLEKLFSYNPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HCCHHHHHCTTT-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 346777777777889999998764 568999999999876543
No 125
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=43.78 E-value=49 Score=29.90 Aligned_cols=106 Identities=13% Similarity=0.085 Sum_probs=56.9
Q ss_pred CCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcc
Q 044094 21 FMSPGHQIPMIDMARIFASR-GVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRD 99 (279)
Q Consensus 21 ~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~ 99 (279)
....-|+.=+..+.++|.++ ++++.++.|............ . -+|.. .++ +.-+ . . .. .
T Consensus 7 ~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~-~-----~~i~~-~~~-------~~~~--~-~--~~-~ 66 (365)
T TIGR00236 7 LGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLD-L-----FHLPP-DYD-------LNIM--S-P--GQ-T 66 (365)
T ss_pred EecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHH-h-----cCCCC-Cee-------eecC--C-C--CC-C
Confidence 55666777788888999876 677777766544322222111 0 01110 000 0000 0 0 00 1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHhcCCCEEEec--CCCCc-hHHHHHHhCCCeEEE
Q 044094 100 LSYNFSKAIMMLHPQADDLVRQCQPDAIISD--MNFPW-TAEIARKYGIPRLVY 150 (279)
Q Consensus 100 ~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D--~~~~~-~~~vA~~lgiP~v~f 150 (279)
...... .+...+.+++++.+||+|++= ..... +..+|.++|||++..
T Consensus 67 ~~~~~~----~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 67 LGEITS----NMLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHH----HHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 111111 233556677888899998774 44333 577789999999854
No 126
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=43.30 E-value=47 Score=28.85 Aligned_cols=36 Identities=31% Similarity=0.583 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCEEEecCCCCch-------HHHHHHhCCCeEEEe
Q 044094 115 ADDLVRQCQPDAIISDMNFPWT-------AEIARKYGIPRLVYH 151 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~~~-------~~vA~~lgiP~v~f~ 151 (279)
+++++++.++++| .|.--+++ ..+|+++|||++-|-
T Consensus 58 l~~~l~~~~i~~v-IDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 58 LAEFLRENGIDAV-IDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred HHHHHHhCCCcEE-EECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 3455566667654 47666654 356788899988873
No 127
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.80 E-value=23 Score=33.10 Aligned_cols=25 Identities=32% Similarity=0.687 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 25 GHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
||+.|++.| ++|...||+|+++...
T Consensus 49 Ghlv~l~kL-~~fQ~aGh~~ivLigd 73 (401)
T COG0162 49 GHLVPLMKL-RRFQDAGHKPIVLIGD 73 (401)
T ss_pred hhHHHHHHH-HHHHHCCCeEEEEecc
Confidence 999999888 5788899999998643
No 128
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=42.25 E-value=52 Score=29.57 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCCcEEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 11 HEQLHVF-FVPFMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 11 ~~~~hvv-~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
..+.|++ +--.|+.|--.=.=.|.++|..+||+|-++.....
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPS 90 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPS 90 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCC
Confidence 4455555 88899999999999999999999999999976544
No 129
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=41.90 E-value=1.1e+02 Score=27.48 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhcCCCEEEecCCCC--chHHHHHHhCCCeEEEeccchH
Q 044094 111 LHPQADDLVRQCQPDAIISDMNFP--WTAEIARKYGIPRLVYHGTCCF 156 (279)
Q Consensus 111 l~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~t~~a~ 156 (279)
....++++++...|.+||++-+.. +...+|++.++|.+...-.+..
T Consensus 71 ~~~~~~~~~~~~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~ 118 (304)
T TIGR00679 71 QKQIIHNLLTLNPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTE 118 (304)
T ss_pred HHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHH
Confidence 345677777767888889987765 4689999999998877554433
No 130
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=41.61 E-value=58 Score=32.16 Aligned_cols=42 Identities=17% Similarity=0.166 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCEEEe-cC--CCCchHHHHHHhCC--CeEEEeccc
Q 044094 113 PQADDLVRQCQPDAIIS-DM--NFPWTAEIARKYGI--PRLVYHGTC 154 (279)
Q Consensus 113 ~~l~~ll~~~~~d~vI~-D~--~~~~~~~vA~~lgi--P~v~f~t~~ 154 (279)
..+.+.+.+.+|||+|. |. |....+.-+++.|+ |.+.|.+-.
T Consensus 300 ~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPq 346 (608)
T PRK01021 300 RKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPS 346 (608)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 33334445578998765 86 33345777889996 987775443
No 131
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=41.21 E-value=51 Score=22.96 Aligned_cols=34 Identities=15% Similarity=0.084 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATIL 47 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~v 47 (279)
.-+|++.-....|..=+-+||+.|+++|+.|...
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4566776777899999999999999999987655
No 132
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=40.99 E-value=28 Score=28.76 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCeEEEEcCCC
Q 044094 31 IDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 31 l~La~~La~~G~~VT~vtt~~ 51 (279)
..||+.+..+|++||+++.+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 578999999999999998763
No 133
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=40.73 E-value=23 Score=33.37 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCCeEEEEcCC
Q 044094 29 PMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 29 P~l~La~~La~~G~~VT~vtt~ 50 (279)
-+-.|++.|+++||+|+++++.
T Consensus 21 ~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 21 VVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred HHHHHHHHHHHCCCeEEEEecC
Confidence 3567999999999999999864
No 134
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=40.42 E-value=1e+02 Score=28.21 Aligned_cols=33 Identities=18% Similarity=-0.037 Sum_probs=22.3
Q ss_pred cCCCEEE-ecC--CCCchHHHHHHh--CCCeEEEeccc
Q 044094 122 CQPDAII-SDM--NFPWTAEIARKY--GIPRLVYHGTC 154 (279)
Q Consensus 122 ~~~d~vI-~D~--~~~~~~~vA~~l--giP~v~f~t~~ 154 (279)
.+|||+| .|. |..+...-+++. |||.+.|.+-.
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~Pq 112 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQ 112 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcc
Confidence 5899765 586 333456667788 79988875543
No 135
>PLN02316 synthase/transferase
Probab=39.95 E-value=78 Score=33.44 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=32.7
Q ss_pred CCCCCCCcEEEEEc-----CCCCCChHH-HHHHHHHHHhCCCeEEEEcCCC
Q 044094 7 KTHDHEQLHVFFVP-----FMSPGHQIP-MIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 7 ~~~~~~~~hvv~vp-----~p~~GH~~P-~l~La~~La~~G~~VT~vtt~~ 51 (279)
......++|||++. +.-.|-+.- .-.|+++|+++||+|.++++..
T Consensus 581 ~~~~~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 581 GIAKEPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CCCCCCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 33445567898775 333466655 4789999999999999998754
No 136
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=39.39 E-value=41 Score=28.14 Aligned_cols=31 Identities=35% Similarity=0.398 Sum_probs=26.3
Q ss_pred CCCEEEecCCCCchHHHHHHhCCCeEEEecc
Q 044094 123 QPDAIISDMNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 123 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
.+.+||+|---..+.+-|++.|||.+++-.-
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~~~k 59 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVLDRK 59 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEeccc
Confidence 5789999987777899999999999887553
No 137
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=39.23 E-value=65 Score=27.79 Aligned_cols=45 Identities=13% Similarity=0.015 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
.-+++.-.|+.|..+=.+|++...+++|..|.++++......+..
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~ 68 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLE 68 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHH
Confidence 467788999999999999999999999999999999887665543
No 138
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=38.97 E-value=71 Score=27.73 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCEEEecCCCCch-------HHHHHHhCCCeEEEe
Q 044094 114 QADDLVRQCQPDAIISDMNFPWT-------AEIARKYGIPRLVYH 151 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~-------~~vA~~lgiP~v~f~ 151 (279)
.+++++++.++++ |.|.--+++ .++++++|||++-|-
T Consensus 56 ~l~~~l~~~~i~~-VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 56 GLAAYLREEGIDL-VIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred HHHHHHHHCCCCE-EEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 3445566677775 557766654 456889999999885
No 139
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=38.68 E-value=46 Score=22.83 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCC
Q 044094 29 PMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 29 P~l~La~~La~~G~~VT~vtt~~ 51 (279)
--+++|..|+.+|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45899999999999999997543
No 140
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=38.18 E-value=25 Score=30.32 Aligned_cols=23 Identities=9% Similarity=0.242 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCC
Q 044094 29 PMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 29 P~l~La~~La~~G~~VT~vtt~~ 51 (279)
-.-.|+|.|+++||+|+++++..
T Consensus 21 v~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 21 VVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHhcCCeEEEEEccc
Confidence 35679999999999999998754
No 141
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=37.86 E-value=59 Score=31.47 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEe
Q 044094 114 QADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYH 151 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 151 (279)
.+++++++.+||+||.+. |...+|+++|||.+...
T Consensus 365 ei~~~I~~~~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARVEPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhcCCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 334555667899999987 67778999999997644
No 142
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=37.86 E-value=2.2e+02 Score=23.06 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=21.8
Q ss_pred CCCCCChHHHHHHHHHH-HhC-CCeEEEEcCCCC
Q 044094 21 FMSPGHQIPMIDMARIF-ASR-GVKATILTTPLN 52 (279)
Q Consensus 21 ~p~~GH~~P~l~La~~L-a~~-G~~VT~vtt~~~ 52 (279)
..+-||..=|+.|.+.+ -++ .++..+++..+.
T Consensus 5 ~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~ 38 (170)
T PF08660_consen 5 LGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDK 38 (170)
T ss_pred EcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCc
Confidence 45679999999999999 334 344444544443
No 143
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=37.38 E-value=47 Score=27.79 Aligned_cols=40 Identities=8% Similarity=0.026 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 13 QLHVFFVPFMSPGHQIP-MIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P-~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
..+|++- .-|-....- ..+|+++|.++|++|.++.|+.-.
T Consensus 5 ~k~Illg-VTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 5 GKRIGFG-LTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred CCEEEEE-EcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 3455544 444555555 699999999999999999887543
No 144
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=37.12 E-value=43 Score=22.52 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.7
Q ss_pred HHHHHHHHhCCCeEEEEc
Q 044094 31 IDMARIFASRGVKATILT 48 (279)
Q Consensus 31 l~La~~La~~G~~VT~vt 48 (279)
|..|..|+++|++|+++=
T Consensus 9 l~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 567889999999999994
No 145
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=36.60 E-value=2.9e+02 Score=24.09 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=22.5
Q ss_pred CCE-EEecCCCC-chHHHHHHhCCCeEEEeccc
Q 044094 124 PDA-IISDMNFP-WTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 124 ~d~-vI~D~~~~-~~~~vA~~lgiP~v~f~t~~ 154 (279)
||+ +|.|.-.- -|..=|+++|||+|.+.-+.
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 885 57777543 34666999999999876554
No 146
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=36.01 E-value=87 Score=27.37 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=25.9
Q ss_pred HHhcCCCEEEecCCCC------chHHHHHHhCCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFP------WTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~t~ 153 (279)
+++..+|+|++..-.. -...+|+.||+|.+.+.+.
T Consensus 108 i~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 108 AQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 3334699999865443 2378999999999988765
No 147
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=35.70 E-value=58 Score=31.45 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 114 QADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
.+++++++.+||+||.+. +...+|+++|||.+..
T Consensus 355 ei~~~i~~~~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 355 EVADAIAALEPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred HHHHHHHhcCCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 444455556899999887 5788999999998865
No 148
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=35.61 E-value=66 Score=26.45 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=27.8
Q ss_pred HHHHHHHHh-cCCCEEEecCCCCch--HHHHHHhCCCeEEEeccc
Q 044094 113 PQADDLVRQ-CQPDAIISDMNFPWT--AEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 113 ~~l~~ll~~-~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~t~~ 154 (279)
+.++.+++. .++.-+|.|.|++.+ ..+|.++|--++.+=...
T Consensus 179 ~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 179 ELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 455666654 467889999999864 788899998888765443
No 149
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=35.45 E-value=95 Score=22.97 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=34.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
+++....++..|-....-++..|.++|++|.++........+
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~ 42 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEI 42 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHH
Confidence 357777889999999999999999999999999765444443
No 150
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=34.43 E-value=66 Score=31.15 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 114 QADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
.+++.+++.+||+||.+. +...+|+++|||.+.+
T Consensus 353 el~~~i~~~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 353 EVEDAIAEAAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred HHHHHHHhcCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 444455556899999776 5778999999998765
No 151
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=33.97 E-value=55 Score=31.30 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=22.9
Q ss_pred HHHHHhcCCCEEEecCCCCchHHHHHHhCCCeE
Q 044094 116 DDLVRQCQPDAIISDMNFPWTAEIARKYGIPRL 148 (279)
Q Consensus 116 ~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 148 (279)
++++++.+||++|.. .+...+|+++|||.+
T Consensus 386 ~~~i~~~~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 386 YKMLKEAKADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred HHHHhhcCCCEEEec---CchhhhhhhcCCCEE
Confidence 344455678999886 567889999999987
No 152
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=33.95 E-value=1.1e+02 Score=28.02 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=29.7
Q ss_pred HhHHHHHHHHHhcCCCEEEecCCCCc----------hHHHHHHhCCCeEEE
Q 044094 110 MLHPQADDLVRQCQPDAIISDMNFPW----------TAEIARKYGIPRLVY 150 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~D~~~~~----------~~~vA~~lgiP~v~f 150 (279)
...+.+.+++++.+||++|+...+.. +..|.+++|||.++-
T Consensus 67 ea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 67 EALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 34455556677789999999987763 134667999998864
No 153
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=33.95 E-value=2.8e+02 Score=23.08 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=36.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
-+++.--|+.|=..=.++++..-+++|..|.+++++....++..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG 61 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 45566678999999999999988888999999999887666544
No 154
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.78 E-value=78 Score=25.45 Aligned_cols=39 Identities=23% Similarity=0.298 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEe
Q 044094 112 HPQADDLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYH 151 (279)
Q Consensus 112 ~~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~ 151 (279)
...+|++++ .+||+||......- ..+--++.|||.+.+.
T Consensus 59 ~~n~E~ll~-l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 59 SLNVELIVA-LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCCHHHHhc-cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 355666554 78999988654332 3344578999988774
No 155
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=33.65 E-value=52 Score=24.20 Aligned_cols=25 Identities=12% Similarity=0.406 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 28 IPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
.|.+.|++.|.++|.+|.+.=+.-.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~ 41 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVD 41 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccC
Confidence 5899999999999999998855433
No 156
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=33.58 E-value=90 Score=27.25 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCEEEecCCCCch-------HHHHHHhCCCeEEE
Q 044094 113 PQADDLVRQCQPDAIISDMNFPWT-------AEIARKYGIPRLVY 150 (279)
Q Consensus 113 ~~l~~ll~~~~~d~vI~D~~~~~~-------~~vA~~lgiP~v~f 150 (279)
+.+.+++++.++| +|.|.--+++ ..+|++.|||++.|
T Consensus 56 e~l~~~l~e~~i~-llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 56 EGLAAFLREEGID-LLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHcCCC-EEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3445566666665 5667776654 45688999999988
No 157
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.33 E-value=2.6e+02 Score=22.52 Aligned_cols=94 Identities=13% Similarity=0.198 Sum_probs=53.4
Q ss_pred HHHHHHHHHhCCCeEEEEcCCC-ChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 044094 30 MIDMARIFASRGVKATILTTPL-NISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNFSKAI 108 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~-~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~ 108 (279)
+..|.+...++|.+|.++.... ..+++...+.. ..++++++-... +.- +
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~----~yP~l~ivg~~~---------g~f--~--------------- 86 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRR----RYPGLRIVGYHH---------GYF--D--------------- 86 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH----HCCCeEEEEecC---------CCC--C---------------
Confidence 4455566666889999996543 22333333221 224577664321 100 0
Q ss_pred HHhHHHHHHHHHhcCCCEEEecCCCC----chHHHHHHhCCCeEEEeccc
Q 044094 109 MMLHPQADDLVRQCQPDAIISDMNFP----WTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 109 ~~l~~~l~~ll~~~~~d~vI~D~~~~----~~~~vA~~lgiP~v~f~t~~ 154 (279)
..-.+.+-+.+.+.++|+|++-+-++ |+....++++.+ +.+...+
T Consensus 87 ~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~ 135 (172)
T PF03808_consen 87 EEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGG 135 (172)
T ss_pred hhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECc
Confidence 00111222345567899999999887 888888899888 4444443
No 158
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=32.80 E-value=84 Score=22.00 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=26.9
Q ss_pred cEEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEc
Q 044094 14 LHVFFVPFMSP--GHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 14 ~hvv~vp~p~~--GH~~P~l~La~~La~~G~~VT~vt 48 (279)
-+|+++|.... .+..-.+.++..|.+.|++|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 36888887653 456678888999989999998754
No 159
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=32.68 E-value=3e+02 Score=23.07 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATIL 47 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~v 47 (279)
..+.=|.++.-.+.|-..-.+.+|-|-+-+|.+|-++
T Consensus 26 ~~~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vv 62 (198)
T COG2109 26 EEKGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVV 62 (198)
T ss_pred cccCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEE
Confidence 3444688999999999999999999999999998877
No 160
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=32.34 E-value=89 Score=27.37 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 26 HQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 26 H~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
--.-+.++++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 34558899999999999999998643
No 161
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=32.22 E-value=38 Score=32.02 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 28 IPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
.=+-.|++.|+++||+|.++++..
T Consensus 21 ~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 21 DVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred HHHHHHHHHHHHcCCeEEEEecCC
Confidence 445789999999999999998643
No 162
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=32.08 E-value=7 Score=22.84 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=13.9
Q ss_pred EcCCCCCChHHHHHHHHHHH
Q 044094 19 VPFMSPGHQIPMIDMARIFA 38 (279)
Q Consensus 19 vp~p~~GH~~P~l~La~~La 38 (279)
=.||+||-+||-+++---|-
T Consensus 16 PTFPGqGP~NPKir~Pyplp 35 (39)
T PF08026_consen 16 PTFPGQGPFNPKIRWPYPLP 35 (39)
T ss_pred CcCCCCCCCCccccccccCC
Confidence 35799999999776544333
No 163
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=31.97 E-value=2e+02 Score=25.86 Aligned_cols=46 Identities=22% Similarity=0.117 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEeccch
Q 044094 110 MLHPQADDLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~~a 155 (279)
...+.++++++...|.+||++-+-.. ...+|++.++|....-..+.
T Consensus 70 ~r~~~~~~l~~~~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t~ 117 (308)
T PRK05428 70 ERKERLKKLFSLEPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLSTT 117 (308)
T ss_pred HHHHHHHHHhCCCCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcHH
Confidence 34567777777778888999987764 48999999999887755443
No 164
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=31.87 E-value=1.1e+02 Score=23.00 Aligned_cols=37 Identities=14% Similarity=0.095 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
||++..-++.|=......|++.|+++|.+|.++-+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4778888999999999999999999999999887765
No 165
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=31.61 E-value=34 Score=26.88 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCCCCChHHHHHHHHHHH
Q 044094 21 FMSPGHQIPMIDMARIFA 38 (279)
Q Consensus 21 ~p~~GH~~P~l~La~~La 38 (279)
.|-+|-.||+|+|+-.|+
T Consensus 56 ~pe~G~tNPFLHlsmHLs 73 (137)
T PF08897_consen 56 SPEQGETNPFLHLSMHLS 73 (137)
T ss_pred CcccCccchhHHHHHHHH
Confidence 477899999999999886
No 166
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=31.53 E-value=83 Score=29.57 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 113 PQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 113 ~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
..+++++++.++|++|.+. +...+|+++|||.+..
T Consensus 362 ~e~~~~l~~~~~dliiG~s---~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 362 FDIESYAKELKIDVLIGNS---YGRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHHHHhcCCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 3445556666788888876 3578888888887643
No 167
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=31.45 E-value=1.1e+02 Score=28.00 Aligned_cols=32 Identities=16% Similarity=0.267 Sum_probs=24.1
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhC-C--CeEEEEc
Q 044094 17 FFVPFMSPGHQIPMIDMARIFASR-G--VKATILT 48 (279)
Q Consensus 17 v~vp~p~~GH~~P~l~La~~La~~-G--~~VT~vt 48 (279)
++-..-|.||.--.-.|++.|.++ | .+|+++-
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d 37 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVD 37 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEe
Confidence 345567889999999999999864 4 5566653
No 168
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=31.43 E-value=90 Score=23.20 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=27.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 21 FMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 21 ~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+-..|+...+++.++.+.++|..|..+|....
T Consensus 60 is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 60 ISYSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp EESSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred eeccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 44778999999999999999999988876544
No 169
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=31.35 E-value=74 Score=30.02 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhCCCeEEEE
Q 044094 29 PMIDMARIFASRGVKATIL 47 (279)
Q Consensus 29 P~l~La~~La~~G~~VT~v 47 (279)
-+-+|-+.|.+-|.+++++
T Consensus 182 d~~elk~lL~~~Gl~~~~l 200 (432)
T TIGR01285 182 DIEELRRMVEAFGLKPIIL 200 (432)
T ss_pred CHHHHHHHHHHcCCceEEe
Confidence 4677777777788888765
No 170
>PRK12342 hypothetical protein; Provisional
Probab=30.77 E-value=1.1e+02 Score=26.77 Aligned_cols=35 Identities=6% Similarity=-0.020 Sum_probs=25.9
Q ss_pred HHhcCCCEEEecCCCC-----c-hHHHHHHhCCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFP-----W-TAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~-----~-~~~vA~~lgiP~v~f~t~ 153 (279)
+++..+|+|++..-.. - +..+|+.||+|.+.+...
T Consensus 105 i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 105 IEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 3334599999865443 2 489999999999987654
No 171
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=30.65 E-value=74 Score=29.27 Aligned_cols=34 Identities=6% Similarity=0.084 Sum_probs=26.3
Q ss_pred cEEEEEcC-CCCCChHHHHHHHHHHHhCC---CeEEEE
Q 044094 14 LHVFFVPF-MSPGHQIPMIDMARIFASRG---VKATIL 47 (279)
Q Consensus 14 ~hvv~vp~-p~~GH~~P~l~La~~La~~G---~~VT~v 47 (279)
++||+++. -|.||.--.-.|...|..+| .+|.++
T Consensus 6 ~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 6 KKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 47886664 57799999999999998875 456655
No 172
>PTZ00445 p36-lilke protein; Provisional
Probab=30.62 E-value=53 Score=27.92 Aligned_cols=29 Identities=10% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCChHH-HHHHHHHHHhCCCeEEEEcCCCC
Q 044094 24 PGHQIP-MIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 24 ~GH~~P-~l~La~~La~~G~~VT~vtt~~~ 52 (279)
-+|+.| +..|.++|.+.|..|++||-.+.
T Consensus 73 ~~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 73 LTSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred hccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 367788 88899999999999999986544
No 173
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.53 E-value=2.9e+02 Score=23.75 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.0
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 20 PFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 20 p~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
-==+.|--.=..+|+.-+...|++||+++|+....
T Consensus 35 Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~r 69 (235)
T COG2874 35 GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVR 69 (235)
T ss_pred CCCCccHHHHHHHHHHHHHhCCceEEEEEechhHH
Confidence 33456777778889999999999999999987654
No 174
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=30.37 E-value=1.3e+02 Score=23.95 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=33.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 16 VFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 16 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
+++.-.|+.|=......|++.|+++|.+|.++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 56778899999999999999999999999999877553
No 175
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=29.62 E-value=1.1e+02 Score=30.23 Aligned_cols=44 Identities=11% Similarity=0.315 Sum_probs=34.9
Q ss_pred CCCCCCCCcEEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 6 TKTHDHEQLHVF-FVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 6 ~~~~~~~~~hvv-~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
+++....+++|+ ++-+.+.|=..=+-+|.++|.+||++|-++-.
T Consensus 2 ~~~~~~~~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 2 TPFTNPLSIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred CcccCCCCccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 444433334554 88899999999999999999999999988854
No 176
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=29.43 E-value=79 Score=28.70 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCEEEecCCCCchHHH--HHHhCCCeEEEe
Q 044094 113 PQADDLVRQCQPDAIISDMNFPWTAEI--ARKYGIPRLVYH 151 (279)
Q Consensus 113 ~~l~~ll~~~~~d~vI~D~~~~~~~~v--A~~lgiP~v~f~ 151 (279)
..+.+++++.+||+||++.-......+ +..+++|.+...
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~ 134 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPIIAVPELKKQTGISIPTYNVL 134 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHHHHHHHHHhcCCCCCeEEEe
Confidence 456677777899999997533322222 335668977544
No 177
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.43 E-value=54 Score=25.50 Aligned_cols=35 Identities=11% Similarity=0.113 Sum_probs=25.4
Q ss_pred EEEEcCCCCC-ChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 16 VFFVPFMSPG-HQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 16 vv~vp~p~~G-H~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
+|++-.|-.- -+...+-++.+|-.+|++||+..++
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~Vaate 41 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATE 41 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCH
Confidence 3444444443 3445788999999999999999876
No 178
>PRK04940 hypothetical protein; Provisional
Probab=29.35 E-value=1.3e+02 Score=24.82 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=24.4
Q ss_pred CCCEEEecCCC-CchHHHHHHhCCCeEEEeccch
Q 044094 123 QPDAIISDMNF-PWTAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 123 ~~d~vI~D~~~-~~~~~vA~~lgiP~v~f~t~~a 155 (279)
++.+||--.+- .|+..+|.++|+|.|.+.++--
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 34555554443 3899999999999999988743
No 179
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=29.25 E-value=1.2e+02 Score=27.76 Aligned_cols=43 Identities=21% Similarity=0.114 Sum_probs=30.0
Q ss_pred HhHHHHHHHHHhcCCCEEEec--CCCC-chHHHHHHhCCCeEEEec
Q 044094 110 MLHPQADDLVRQCQPDAIISD--MNFP-WTAEIARKYGIPRLVYHG 152 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~D--~~~~-~~~~vA~~lgiP~v~f~t 152 (279)
.+...+.+++.+.+||+||+= .+.. .+..+|..+|||++-+..
T Consensus 80 ~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hvea 125 (365)
T TIGR03568 80 LTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHG 125 (365)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEEC
Confidence 344566777888899987764 3333 347788999999995533
No 180
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=29.22 E-value=45 Score=30.90 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 25 GHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
||+.|++.| ++|.+.||+++++..
T Consensus 47 Gh~v~l~~l-~~lq~~G~~~~ilig 70 (377)
T TIGR00234 47 GHLVPLLKL-RDFQQAGHEVIVLLG 70 (377)
T ss_pred HHHHHHHHH-HHHHHCCCcEEEEEe
Confidence 999997665 688899999988854
No 181
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=29.12 E-value=89 Score=29.28 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 114 QADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
.+++++++.+||+||.+. +...+|+++|+|.+.+
T Consensus 362 el~~~i~~~~pdliig~~---~~~~~a~~~~ip~i~~ 395 (428)
T cd01965 362 DLESLAKEEPVDLLIGNS---HGRYLARDLGIPLVRV 395 (428)
T ss_pred HHHHHhhccCCCEEEECc---hhHHHHHhcCCCEEEe
Confidence 344445556799999987 3578899999998754
No 182
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=29.07 E-value=24 Score=21.39 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCEEEecCCCCc-hHHHHHHhCCCeE
Q 044094 114 QADDLVRQCQPDAIISDMNFPW-TAEIARKYGIPRL 148 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~-~~~vA~~lgiP~v 148 (279)
.++-++..++-||.+.|.--.- .+++|.++||...
T Consensus 4 ~lelll~~H~~dC~~C~~~G~CeLQ~~~~~~gv~~~ 39 (41)
T PF10588_consen 4 VLELLLANHPLDCPTCDKNGNCELQDLAYEYGVDEQ 39 (41)
T ss_dssp HHHHHHTT----TTT-TTGGG-HHHHHHHHH-S---
T ss_pred HHHHHHhCCCCcCcCCCCCCCCHHHHHHHHhCCCcC
Confidence 4566777788999999954443 4899999998654
No 183
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=28.85 E-value=53 Score=27.43 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
+..|++.|.+.||+|+++.+..+++-.
T Consensus 16 i~aL~~~L~~~g~~V~VvAP~~~~Sg~ 42 (196)
T PF01975_consen 16 IRALAKALSALGHDVVVVAPDSEQSGT 42 (196)
T ss_dssp HHHHHHHHTTTSSEEEEEEESSSTTTS
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCCcCc
Confidence 567899997778999999988776544
No 184
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=28.76 E-value=1.2e+02 Score=20.90 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
+|+++++ ..++..-.+.+++.|.+.|++|.+-.
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5666665 56788889999999999999998854
No 185
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.51 E-value=1.4e+02 Score=26.27 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
.-++++..+|.|=..-...||..|+.+|.+|.+++...+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 355688899999999999999999999999999987754
No 186
>PRK09620 hypothetical protein; Provisional
Probab=28.05 E-value=58 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.111 Sum_probs=20.0
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
+.|.+- .+||++|..+|++|+++...
T Consensus 27 SSGfiG--s~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 27 AKGTIG--RIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CcCHHH--HHHHHHHHHCCCeEEEEeCC
Confidence 344443 67899999999999999643
No 187
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=27.91 E-value=85 Score=27.43 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.6
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
-|--.-+..|++.|+++|++|++++...
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 40 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAA 40 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeec
Confidence 4666778999999999999999997653
No 188
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.85 E-value=4.7e+02 Score=23.83 Aligned_cols=103 Identities=12% Similarity=0.157 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCCC-hhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 044094 26 HQIPMIDMARIFASRGVKATILTTPLN-ISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNF 104 (279)
Q Consensus 26 H~~P~l~La~~La~~G~~VT~vtt~~~-~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~ 104 (279)
|+-=+-++-+.|..+||+|.+.+-..- ..++... .++.+..+- ..|. . .....+
T Consensus 12 hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~---------ygf~~~~Ig--------k~g~---~-----tl~~Kl 66 (346)
T COG1817 12 HVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL---------YGFPYKSIG--------KHGG---V-----TLKEKL 66 (346)
T ss_pred hhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH---------hCCCeEeec--------ccCC---c-----cHHHHH
Confidence 455567888999999999887765432 1122211 124444332 0110 0 111123
Q ss_pred HHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccch
Q 044094 105 SKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 105 ~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a 155 (279)
.....+ .-.|.+++.+.+||..|. ...+.+..||--+|+|.+.|.-..-
T Consensus 67 ~~~~eR-~~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 67 LESAER-VYKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHHHHH-HHHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 322211 234556677789999999 6778899999999999999965543
No 189
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.76 E-value=96 Score=25.10 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=25.5
Q ss_pred HHHHHHHHh---cCCCEEEecCCCCchHHHHHHhCCCeEEEecc
Q 044094 113 PQADDLVRQ---CQPDAIISDMNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 113 ~~l~~ll~~---~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
+.++..+.+ ..+|+||-+.. +...|+++|+|++.+.++
T Consensus 112 ~e~~~~i~~~~~~G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 112 EEIEAAIKQAKAEGVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp HHHHHHHHHHHHTT--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred HHHHHHHHHHHHcCCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 344444443 57999999974 689999999999887764
No 190
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=27.72 E-value=1.5e+02 Score=28.18 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
+..|+++-.+|.|=..-...||+.|.++|++|.+++...+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 44677999999999999999999999999999999887653
No 191
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.71 E-value=1.3e+02 Score=24.81 Aligned_cols=43 Identities=16% Similarity=0.379 Sum_probs=28.2
Q ss_pred HHHHHHhcCCC--EEEecCCCC-chHHHHHHhCCCeEEEeccchHH
Q 044094 115 ADDLVRQCQPD--AIISDMNFP-WTAEIARKYGIPRLVYHGTCCFS 157 (279)
Q Consensus 115 l~~ll~~~~~d--~vI~D~~~~-~~~~vA~~lgiP~v~f~t~~a~~ 157 (279)
+++++++...+ ++|--.+-+ |+..+|+++|+|.|.+.++--..
T Consensus 49 l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~ 94 (187)
T PF05728_consen 49 LEQLIEELKPENVVLIGSSLGGFYATYLAERYGLPAVLINPAVRPY 94 (187)
T ss_pred HHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHH
Confidence 34555554332 555555443 67899999999999988775433
No 192
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=27.67 E-value=90 Score=23.83 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 28 IPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
...+.|+++-.+|||+|.+++...
T Consensus 18 DTT~alm~eAq~RGhev~~~~~~d 41 (119)
T PF02951_consen 18 DTTFALMLEAQRRGHEVFYYEPGD 41 (119)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-GGG
T ss_pred ChHHHHHHHHHHCCCEEEEEEcCc
Confidence 457788899999999999997654
No 193
>PRK06849 hypothetical protein; Provisional
Probab=27.57 E-value=1.4e+02 Score=27.44 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
++.+||+.- |-..-.++++|.|.++|++|+++....
T Consensus 3 ~~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITG----ARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 445777762 233358999999999999999997654
No 194
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=27.40 E-value=64 Score=22.83 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
++++++.|++.|++| +.|+.....++.
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~~ 28 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLRE 28 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHHH
Confidence 578999999999986 456666655543
No 195
>PRK05973 replicative DNA helicase; Provisional
Probab=26.90 E-value=1.3e+02 Score=25.97 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=37.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
-+++.--||.|=.+=.++++...+.+|..|.|++.+.....+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 56778889999999999999999999999999998877665543
No 196
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=26.89 E-value=59 Score=23.35 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
++++||+|++.|++ ++.|....+.++.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~ 28 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKE 28 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHH
Confidence 58999999999975 6777777766654
No 197
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=26.62 E-value=75 Score=27.30 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 27 QIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 27 ~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+-++++|.+.|.++|++|.|+|.-..
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 45789999999999999999987543
No 198
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.61 E-value=82 Score=26.98 Aligned_cols=34 Identities=9% Similarity=0.128 Sum_probs=29.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
=|++--+|+.|-..=.-+|||.|.+++++|..++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 4677889999999999999999999999876664
No 199
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.57 E-value=72 Score=24.42 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCeEEEEc
Q 044094 30 MIDMARIFASRGVKATILT 48 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vt 48 (279)
.+..|++|+.+|++|+..-
T Consensus 25 ~~~VA~~L~e~g~dv~atD 43 (129)
T COG1255 25 FLDVAKRLAERGFDVLATD 43 (129)
T ss_pred HHHHHHHHHHcCCcEEEEe
Confidence 6889999999999987763
No 200
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=26.40 E-value=1.4e+02 Score=26.13 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=20.0
Q ss_pred HHhcCCCEEEecCCCC--chHHHHHHhCCCeEEEe
Q 044094 119 VRQCQPDAIISDMNFP--WTAEIARKYGIPRLVYH 151 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~ 151 (279)
+++.++.||+++.... .+..+|++.|++.+.+.
T Consensus 216 ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld 250 (282)
T cd01017 216 VKKSDVKYIFFEENASSKIAETLAKETGAKLLVLN 250 (282)
T ss_pred HHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEec
Confidence 4445677777776655 23566777777665443
No 201
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=26.10 E-value=65 Score=27.48 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=21.0
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 18 FVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 18 ~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
++.-.+.|-+ -..||++|+++|++|+++..
T Consensus 19 ~itN~SSG~i--G~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 19 GITNHSTGQL--GKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred eecCccchHH--HHHHHHHHHhCCCEEEEEEC
Confidence 3444444433 25788999999999999863
No 202
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=26.08 E-value=1.8e+02 Score=26.46 Aligned_cols=37 Identities=8% Similarity=0.173 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
..|++..-++.|=..-...||..|+++|.+|-++-..
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 3455777888899999999999999999999998554
No 203
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.06 E-value=1.2e+02 Score=25.06 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
-|+++-..|.|=..-...||.++..+|.+|.++++..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 466888899999999999999999999999999987663
No 204
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=26.02 E-value=1.1e+02 Score=29.74 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCChHH--HHHHHHHHHhCCCeEEEEc
Q 044094 13 QLHVFFVPFMSPGHQIP--MIDMARIFASRGVKATILT 48 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P--~l~La~~La~~G~~VT~vt 48 (279)
+.+|-++| +. |.+| +-+|-+.|..-|.+++++.
T Consensus 220 ~~~VNii~--g~-~~~~gd~~eikrlL~~~Gi~~~~l~ 254 (515)
T TIGR01286 220 NGKINIIP--GF-ETYIGNFREIKRILSLMGVGYTLLS 254 (515)
T ss_pred CCeEEEEC--CC-CCCchhHHHHHHHHHHcCCCeEEcc
Confidence 34566765 22 1224 6788888888899988753
No 205
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.98 E-value=97 Score=29.09 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 114 QADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
.+++++++.+||++|.... ...+|+++|||...+
T Consensus 360 e~~~~i~~~~pDliig~~~---~~~~a~k~giP~~~~ 393 (421)
T cd01976 360 ELEEFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQM 393 (421)
T ss_pred HHHHHHHHhCCCEEEecCc---chhhhhhcCCCeEeC
Confidence 4455566678999998764 566899999998654
No 206
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.88 E-value=29 Score=24.02 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEcC
Q 044094 28 IPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vtt 49 (279)
+=||.|..++.++|.+|+|+.-
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~L 53 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQL 53 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHH
Confidence 4589999999999999999853
No 207
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=25.77 E-value=94 Score=21.57 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=21.8
Q ss_pred cCCCEEEecCCCC--chHHHHHHhCCCeEEEe
Q 044094 122 CQPDAIISDMNFP--WTAEIARKYGIPRLVYH 151 (279)
Q Consensus 122 ~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~ 151 (279)
.++..||++.-.. .+.-+|+++|||.++=.
T Consensus 29 ~~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 29 QRVAGIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp TTSSEEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred hheEEEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 4677888887544 46889999999998643
No 208
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=25.49 E-value=1.8e+02 Score=19.68 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=27.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 16 VFFVPFMSPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 16 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
+++....+.|=..-...|++.|++.|.+|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 445556688888889999999999999998775
No 209
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=25.43 E-value=1.6e+02 Score=21.42 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCEEEecCCCC-----c--hHHHHHHhCCCeEEEeccchHHHHHHHHHHh
Q 044094 113 PQADDLVRQCQPDAIISDMNFP-----W--TAEIARKYGIPRLVYHGTCCFSLSLSVAAAQ 166 (279)
Q Consensus 113 ~~l~~ll~~~~~d~vI~D~~~~-----~--~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~ 166 (279)
..++++++...+|++..|.... + ..+.|+++|++...-...+...+++..|+-.
T Consensus 8 ~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~~i~~aa~~hlaa 68 (111)
T PF13378_consen 8 HDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSMESGIGLAASLHLAA 68 (111)
T ss_dssp HHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHHHH
Confidence 4566777777789999995432 1 2577899999988776555566666666654
No 210
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=25.43 E-value=1.3e+02 Score=25.71 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEecc
Q 044094 117 DLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 117 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~ 153 (279)
+.+++.++.||+++....- +..+|++.|++.+.+.+.
T Consensus 193 ~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 193 KLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 4455578999999987764 478899999999877665
No 211
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=25.41 E-value=2.2e+02 Score=22.91 Aligned_cols=45 Identities=20% Similarity=0.256 Sum_probs=28.7
Q ss_pred HHhHHHHHHHHHhcCCCEEEecCCCCc-----------h----HHHHHHhCCCeEEEecc
Q 044094 109 MMLHPQADDLVRQCQPDAIISDMNFPW-----------T----AEIARKYGIPRLVYHGT 153 (279)
Q Consensus 109 ~~l~~~l~~ll~~~~~d~vI~D~~~~~-----------~----~~vA~~lgiP~v~f~t~ 153 (279)
..+.+.+++++++.+||.++.+..+.. + ..++.+.|||.+-+.+.
T Consensus 47 ~~I~~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 47 KQIYDGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 345677888888889998877754321 1 23456667776666443
No 212
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=25.36 E-value=1.8e+02 Score=21.52 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=22.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 22 MSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
...|.-.-+..+++.|+++|+.|..+..+
T Consensus 7 G~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 7 GWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp TTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 33445667899999999999988887543
No 213
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=25.19 E-value=1.9e+02 Score=23.03 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=36.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 16 VFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 16 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
+++.--|+.|=..=.++++...+..|..|.|++++...+.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~ 43 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI 43 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH
Confidence 567778999999999999999999999999999987766554
No 214
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.07 E-value=1.9e+02 Score=27.33 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=29.7
Q ss_pred HhHHHHHHHHHhcCCCEEEecCCCCch----------HHHHHHhCCCeEEE
Q 044094 110 MLHPQADDLVRQCQPDAIISDMNFPWT----------AEIARKYGIPRLVY 150 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~D~~~~~~----------~~vA~~lgiP~v~f 150 (279)
...+.+.+++++.+||++|+...+... ..|.+++|||.++-
T Consensus 63 ea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vta 113 (431)
T TIGR01917 63 EAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTA 113 (431)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 344556666777899999999876531 34567899998864
No 215
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=25.06 E-value=1.1e+02 Score=28.96 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 115 ADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
+++++++.+||++|.. .+...+|+++|||.+.+
T Consensus 387 ~~~~i~~~~pDl~ig~---~~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 387 LLKLLLEYKADLLIAG---GKERYTALKLGIPFCDI 419 (456)
T ss_pred HHHHHhhcCCCEEEEc---cchHHHHHhcCCCEEEc
Confidence 3344445578888865 45677888899997754
No 216
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.98 E-value=1.9e+02 Score=27.29 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=29.6
Q ss_pred HhHHHHHHHHHhcCCCEEEecCCCCch----------HHHHHHhCCCeEEE
Q 044094 110 MLHPQADDLVRQCQPDAIISDMNFPWT----------AEIARKYGIPRLVY 150 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~D~~~~~~----------~~vA~~lgiP~v~f 150 (279)
...+.+.+++++.+||++|+...+... ..|.+++|||.++-
T Consensus 63 ea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~ 113 (431)
T TIGR01918 63 EAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTS 113 (431)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEE
Confidence 344556666777899999999876531 34567899998864
No 217
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=24.95 E-value=1.6e+02 Score=27.85 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=35.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
.-|+++-.+|.|=..-...||..|..+|.+|.++++..+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3566888999999999999999999999999999987654
No 218
>COG3150 Predicted esterase [General function prediction only]
Probab=24.87 E-value=1.1e+02 Score=25.17 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=28.9
Q ss_pred HHHHHHHHhcC-CCEEEecCCC--CchHHHHHHhCCCeEEEeccc
Q 044094 113 PQADDLVRQCQ-PDAIISDMNF--PWTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 113 ~~l~~ll~~~~-~d~vI~D~~~--~~~~~vA~~lgiP~v~f~t~~ 154 (279)
+.+++++.+.. .+-+|+..-+ .|+-.++..+||+.|+|.+.-
T Consensus 47 ~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~Girav~~NPav 91 (191)
T COG3150 47 KELEKAVQELGDESPLIVGSSLGGYYATWLGFLCGIRAVVFNPAV 91 (191)
T ss_pred HHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhCChhhhcCCCc
Confidence 34555665532 3345555544 499999999999999998764
No 219
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=24.78 E-value=2.4e+02 Score=26.56 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 10 DHEQLHVFFVPF-MSPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 10 ~~~~~hvv~vp~-p~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+...+-||++|- .+-+|-.=+++|+.++.++|.++.+++.-.
T Consensus 122 ~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 122 DGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 345567777765 666788779999999999999999998654
No 220
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=24.47 E-value=2e+02 Score=25.41 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCEEEecCCCCc----h---HHHHHHhCCCeEEEeccchHHHHHHH
Q 044094 115 ADDLVRQCQPDAIISDMNFPW----T---AEIARKYGIPRLVYHGTCCFSLSLSV 162 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~~----~---~~vA~~lgiP~v~f~t~~a~~~~~~~ 162 (279)
+..++.+..--++|+|.-++. + ..-|++.||+++.+-..+|...+++.
T Consensus 70 li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~gi~V~~lPG~sA~~tAL~~ 124 (275)
T COG0313 70 LIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAGIRVVPLPGPSALITALSA 124 (275)
T ss_pred HHHHHhcCCeEEEEecCCCCcccCccHHHHHHHHHcCCcEEecCCccHHHHHHHH
Confidence 334455444568999998873 2 35589999999999888887766665
No 221
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=24.43 E-value=1.6e+02 Score=24.51 Aligned_cols=36 Identities=17% Similarity=0.052 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
-+++.-.|+.|...=.++|+...+..|.+|.|++++
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456888999999999999999999999999999988
No 222
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.32 E-value=1.4e+02 Score=28.11 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 044094 30 MIDMARIFASRGVKATIL 47 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~v 47 (279)
+-+|-+.|.+-|.+|+++
T Consensus 176 ~~el~~lL~~~Gl~~~~~ 193 (435)
T cd01974 176 MREIKRLLELMGVDYTIL 193 (435)
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 677888888889998764
No 223
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=24.15 E-value=62 Score=24.24 Aligned_cols=28 Identities=11% Similarity=0.110 Sum_probs=23.2
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 20 PFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 20 p~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
-+|++|+++=-.+|++++.+.|. +|+.+
T Consensus 78 i~pGyg~lse~~~fa~~~~~~gi--~fiGp 105 (110)
T PF00289_consen 78 IHPGYGFLSENAEFAEACEDAGI--IFIGP 105 (110)
T ss_dssp EESTSSTTTTHHHHHHHHHHTT---EESSS
T ss_pred cccccchhHHHHHHHHHHHHCCC--EEECc
Confidence 37999999999999999998885 56654
No 224
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=24.14 E-value=82 Score=25.90 Aligned_cols=39 Identities=18% Similarity=0.217 Sum_probs=28.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
+|++.-..+.|=+ =..++.++|.++|++|.++.|+.-.+
T Consensus 3 ~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~ 41 (182)
T PRK07313 3 NILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATK 41 (182)
T ss_pred EEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 5555544444444 48999999999999999998875433
No 225
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=23.97 E-value=84 Score=28.61 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHhcCCCEEEe--cCCCCc-hHHHHHHhCCCeEEEecc
Q 044094 110 MLHPQADDLVRQCQPDAIIS--DMNFPW-TAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~--D~~~~~-~~~vA~~lgiP~v~f~t~ 153 (279)
.+...+.+++.+.+||+||+ |.+..- ++.+|..++||.+-.-..
T Consensus 54 ~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 54 LAIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 34456667777789998765 555443 477789999997766544
No 226
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=23.86 E-value=2.1e+02 Score=22.83 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCEEEecCCCC---chHHHHHHhCCCeEEEecc
Q 044094 114 QADDLVRQCQPDAIISDMNFP---WTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~---~~~~vA~~lgiP~v~f~t~ 153 (279)
.+.+++++.+|++|+.-.-.. ++..+|.+||.|.+.-.+.
T Consensus 74 al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~ 116 (168)
T cd01715 74 ALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTA 116 (168)
T ss_pred HHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEE
Confidence 344556666799888765433 5689999999999876654
No 227
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=23.82 E-value=1.1e+02 Score=27.32 Aligned_cols=38 Identities=24% Similarity=0.210 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCEEEecC--CCCc-hHHHHHHhCCCeEEEe
Q 044094 114 QADDLVRQCQPDAIISDM--NFPW-TAEIARKYGIPRLVYH 151 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~--~~~~-~~~vA~~lgiP~v~f~ 151 (279)
.+.+.+.+.+||+|++=. ...+ +..+|+.+|||++...
T Consensus 79 ~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 79 GLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred HHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 344556667899887753 2223 4567888999988753
No 228
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=23.50 E-value=1.5e+02 Score=25.90 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=24.0
Q ss_pred HHHHhcCCCEEEecCCCCc----h-HHHHHHhCCCeEEE
Q 044094 117 DLVRQCQPDAIISDMNFPW----T-AEIARKYGIPRLVY 150 (279)
Q Consensus 117 ~ll~~~~~d~vI~D~~~~~----~-~~vA~~lgiP~v~f 150 (279)
.++++++.|+||+=-.-.- . ...|+++|||+++.
T Consensus 190 all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 190 ALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred HHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 4566678999998653332 1 57789999998864
No 229
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.47 E-value=1e+02 Score=25.57 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCEEEecCCC--CchHHHHHHhCCCeEEEeccc
Q 044094 114 QADDLVRQCQPDAIISDMNF--PWTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~--~~~~~vA~~lgiP~v~f~t~~ 154 (279)
.+|.++ +.+||+||..... .....-..+.|||.+++-...
T Consensus 52 ~~E~i~-~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 52 NLEAIL-ALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp -HHHHH-HT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred cHHHHH-hCCCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 334433 3689999998877 344566778999999997765
No 230
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=23.46 E-value=99 Score=29.23 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=20.6
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 119 VRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
+++.+||++|... +...+|+++|||.+..
T Consensus 383 i~~~~pdllig~s---~~~~~A~~lgip~~~~ 411 (443)
T TIGR01862 383 LEKLKPDIIFSGI---KEKFVAQKLGVPYRQM 411 (443)
T ss_pred HHhcCCCEEEEcC---cchhhhhhcCCCeEec
Confidence 3445788887654 5677888888887753
No 231
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=23.45 E-value=1.1e+02 Score=26.89 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=29.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
.+++++. .+.| +.|++.+++.|+++|.+|+++-...+.+
T Consensus 99 ~~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~~~ 137 (281)
T PRK06222 99 GTVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARNKD 137 (281)
T ss_pred CeEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCCHH
Confidence 3677764 4444 8999999999999999999886655543
No 232
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=23.22 E-value=51 Score=22.63 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCCeEEEEcCCCC
Q 044094 31 IDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 31 l~La~~La~~G~~VT~vtt~~~ 52 (279)
-+|+..|..+|+.||=.|....
T Consensus 23 ~eL~~~L~~~Gi~vTQaTiSRD 44 (70)
T PF01316_consen 23 EELVELLEEEGIEVTQATISRD 44 (70)
T ss_dssp HHHHHHHHHTT-T--HHHHHHH
T ss_pred HHHHHHHHHcCCCcchhHHHHH
Confidence 4789999999999887765433
No 233
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=23.19 E-value=87 Score=25.23 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEc
Q 044094 12 EQLHVFFVPFMSPGHQIP-MIDMARIFASRGVKATILT 48 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P-~l~La~~La~~G~~VT~vt 48 (279)
...+|+++.-+ |+--- -+-+||+|+++|++|+++.
T Consensus 24 ~~~~v~il~G~--GnNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 24 KGPRVLILCGP--GNNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp TT-EEEEEE-S--SHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCeEEEEECC--CCChHHHHHHHHHHHHCCCeEEEEE
Confidence 34567776544 32222 6778999999999999954
No 234
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=23.19 E-value=1.5e+02 Score=25.66 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCe
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVK 43 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~ 43 (279)
+=||+.-+|..|-..=..+|...|.++|++
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 358899999999999999999999999975
No 235
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.16 E-value=1.4e+02 Score=21.46 Aligned_cols=36 Identities=31% Similarity=0.532 Sum_probs=25.2
Q ss_pred CCCEE--EecCCCC---c-hHHHHHHhCCCeEEEeccchHHH
Q 044094 123 QPDAI--ISDMNFP---W-TAEIARKYGIPRLVYHGTCCFSL 158 (279)
Q Consensus 123 ~~d~v--I~D~~~~---~-~~~vA~~lgiP~v~f~t~~a~~~ 158 (279)
+.|+| ++|.... | +...|++.|+|.+..-..+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 46765 6676543 3 36889999999998876665543
No 236
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.06 E-value=1.1e+02 Score=28.39 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=19.9
Q ss_pred HHHHhcCCCEEEecCCCCchHHHHHHhCCCeE
Q 044094 117 DLVRQCQPDAIISDMNFPWTAEIARKYGIPRL 148 (279)
Q Consensus 117 ~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 148 (279)
+.+++.+||++|.. .+...+|+++|||.+
T Consensus 350 ~~i~~~~pDl~ig~---s~~~~~a~~~gip~~ 378 (410)
T cd01968 350 KLLKEKKADLLVAG---GKERYLALKLGIPFC 378 (410)
T ss_pred HHHhhcCCCEEEEC---CcchhhHHhcCCCEE
Confidence 34444578888877 345677888888876
No 237
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=22.81 E-value=1.2e+02 Score=30.76 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=28.6
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~~ 154 (279)
++.--+|++|+|.-+.. ...+|+++|.+.|.+.+--
T Consensus 261 i~tG~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r~ 298 (731)
T cd01916 261 VRSGIADVVVVDEQCIRADILEEAQKLGIPVIATNDKI 298 (731)
T ss_pred HHcCCCcEEEEecccCcccHHHHHHHhCCCEEEechhh
Confidence 33446899999987764 5899999999999887643
No 238
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.59 E-value=1.8e+02 Score=23.99 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATIL 47 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~v 47 (279)
..|++-.-..|--.-+.++|++|+++|+.|.+.
T Consensus 15 ~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~p 47 (218)
T PF01738_consen 15 PAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAP 47 (218)
T ss_dssp EEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE
T ss_pred CEEEEEcCCCCCchHHHHHHHHHHhcCCCEEec
Confidence 344444567788888889999999999766554
No 239
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=22.40 E-value=1.6e+02 Score=24.96 Aligned_cols=39 Identities=26% Similarity=0.404 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCCEEEecCCCCc--hHH-HHHHhCCCeEEEecc
Q 044094 114 QADDLVRQCQPDAIISDMNFPW--TAE-IARKYGIPRLVYHGT 153 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~--~~~-vA~~lgiP~v~f~t~ 153 (279)
.+|+++ +.+||+||....... ..+ +-+..|+|++.+...
T Consensus 66 n~E~i~-~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKIA-ALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHHH-hcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 445544 368999998765443 223 334599999888654
No 240
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=22.39 E-value=1.4e+02 Score=26.94 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=38.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCCChhhh
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASR--GVKATILTTPLNISRF 56 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~vtt~~~~~~~ 56 (279)
...+||++-.-+.|-+.=.+.+.+.|.++ +.+|++++.+.+..-+
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 34589999999999999999999999885 8999999987765443
No 241
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=22.37 E-value=1.9e+02 Score=24.83 Aligned_cols=42 Identities=10% Similarity=0.055 Sum_probs=35.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCChhhhh
Q 044094 16 VFFVPFMSPGHQIPMIDMARIFASR-GVKATILTTPLNISRFE 57 (279)
Q Consensus 16 vv~vp~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~~~~~~ 57 (279)
+++-..|+.|-..=++++|..++.+ |+.|.|++.+-...++.
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~ 64 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELA 64 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHH
Confidence 5677889999999999999999997 69999999987766553
No 242
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=22.30 E-value=1.5e+02 Score=27.72 Aligned_cols=30 Identities=33% Similarity=0.537 Sum_probs=23.2
Q ss_pred HHhcCCCEEEecCCCCchHHHHHHhCCCeEEEe
Q 044094 119 VRQCQPDAIISDMNFPWTAEIARKYGIPRLVYH 151 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~ 151 (279)
+++.+||++|.. +-+..+|+++|||.+.+.
T Consensus 346 ~~~~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 346 VEEYRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred HhhcCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 445689999977 346789999999987643
No 243
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=22.08 E-value=63 Score=25.38 Aligned_cols=27 Identities=7% Similarity=0.271 Sum_probs=20.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
.+-|+.+|..+|++|++..++.-...+
T Consensus 16 alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 16 ALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 678899999999999999877543333
No 244
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=22.03 E-value=93 Score=26.38 Aligned_cols=28 Identities=18% Similarity=0.074 Sum_probs=21.2
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+.|++- -.||++|++.||+|++.+....
T Consensus 8 GtGniG--~alA~~~a~ag~eV~igs~r~~ 35 (211)
T COG2085 8 GTGNIG--SALALRLAKAGHEVIIGSSRGP 35 (211)
T ss_pred ccChHH--HHHHHHHHhCCCeEEEecCCCh
Confidence 444443 4688999999999999976554
No 245
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=21.93 E-value=1.1e+02 Score=27.18 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+.+++|+++-..+.| .-||.+|++.||+||++.-..
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 344688888555555 346788999999999997543
No 246
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=21.90 E-value=1.7e+02 Score=24.93 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=34.3
Q ss_pred CCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 8 THDHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 8 ~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
.....+.-|++|-.||.|=..=.-+|+|.|--.|++.-+++......
T Consensus 7 ~~~~~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR 53 (222)
T PF01591_consen 7 LFHAGKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRR 53 (222)
T ss_dssp ------EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHH
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeeccccee
Confidence 33556678889999999999999999999999999999998654433
No 247
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=21.87 E-value=3e+02 Score=24.76 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcCCCEEEecCCCCch--HHHHHHhCCCeEEEeccc-hHHHHHHHHHH
Q 044094 111 LHPQADDLVRQCQPDAIISDMNFPWT--AEIARKYGIPRLVYHGTC-CFSLSLSVAAA 165 (279)
Q Consensus 111 l~~~l~~ll~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f~t~~-a~~~~~~~~~~ 165 (279)
-...+++++.-..|.+|++.-+-... .+.|++.++|....--++ -...-+..|+.
T Consensus 70 r~~~i~~~~~~~~P~iI~sk~~~~p~~l~~~a~~~~~pil~s~~~ts~l~~~l~~yL~ 127 (308)
T COG1493 70 RKKRIGKLFSLDTPALIVSKGLPIPEELLDAAKKYNIPILTSKLSTSELSFTLTNYLS 127 (308)
T ss_pred HHHHHHHHhCcCCCEEEEECCCCCCHHHHHHHHHcCCceEEecchHHHHHHHHHHHhh
Confidence 35677777777789999999877643 789999999988763332 33333444444
No 248
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=21.73 E-value=3.1e+02 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 28 IPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
.=+++||+.|.+.|++| +.|....+.++.
T Consensus 15 ~~iv~lAk~L~~lGfeI--~AT~GTak~L~e 43 (513)
T PRK00881 15 TGIVEFAKALVELGVEI--LSTGGTAKLLAE 43 (513)
T ss_pred ccHHHHHHHHHHCCCEE--EEcchHHHHHHH
Confidence 34789999999999987 466777766654
No 249
>PRK13604 luxD acyl transferase; Provisional
Probab=21.71 E-value=2e+02 Score=25.85 Aligned_cols=33 Identities=9% Similarity=0.086 Sum_probs=24.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATIL 47 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~v 47 (279)
.++++.....++-.-+..+|+.|+++|+.|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 344444444456556999999999999987666
No 250
>PLN02891 IMP cyclohydrolase
Probab=21.39 E-value=2.5e+02 Score=27.35 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 28 IPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 28 ~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
.=+.+||+.|.+.|++ +++|....+.++.
T Consensus 33 tgi~~fAk~L~~~gve--IiSTgGTak~L~e 61 (547)
T PLN02891 33 TDLALLANGLQELGYT--IVSTGGTASALEA 61 (547)
T ss_pred cCHHHHHHHHHHCCCE--EEEcchHHHHHHH
Confidence 3478999999999875 6778777776664
No 251
>PRK14974 cell division protein FtsY; Provisional
Probab=21.12 E-value=2.3e+02 Score=25.76 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+..|+++-.+|.|=..-...||..|..+|++|.++++..+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 3467799999999999999999999999999999887644
No 252
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=21.06 E-value=1.1e+02 Score=25.14 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=21.5
Q ss_pred HHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 31 IDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 31 l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
.+|.++|.++|++|.++.|+.-.+.+
T Consensus 16 ~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 16 IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 78999999999999999987654443
No 253
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=21.05 E-value=2.4e+02 Score=20.64 Aligned_cols=35 Identities=11% Similarity=0.358 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCEEEecCCCCch--HHHHHHhCCCeE
Q 044094 114 QADDLVRQCQPDAIISDMNFPWT--AEIARKYGIPRL 148 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v 148 (279)
.++++++...+|+||.|--.... ..+.+.+|++++
T Consensus 48 ei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~~~V~ 84 (95)
T PF13167_consen 48 EIKELIEELDADLVVFDNELSPSQQRNLEKALGVKVI 84 (95)
T ss_pred HHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHCCeee
Confidence 34455556789999999877765 577888888754
No 254
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=21.02 E-value=3.4e+02 Score=21.43 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASR--GVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNF 78 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~ 78 (279)
+...+|++|..-..+|+.=.+++.+.+... .+++.+..-.-....+...-. ...++++..+++
T Consensus 57 ~n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~-----~~~n~evr~Fn~ 121 (142)
T PF07801_consen 57 KNSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKK-----NFCNVEVRKFNF 121 (142)
T ss_pred ccCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHh-----cCCceEEEECCC
Confidence 455699999999999999999999999986 477888876655555443211 114577877764
No 255
>PRK10867 signal recognition particle protein; Provisional
Probab=20.85 E-value=2.1e+02 Score=27.09 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCChh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASR-GVKATILTTPLNIS 54 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~~~ 54 (279)
.-|+++-.+|.|=..-...||+.|+.+ |.+|.+++...+..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 356688899999999999999999998 99999999876544
No 256
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=20.82 E-value=1.8e+02 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=28.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 16 VFFVPFMSPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 16 vv~vp~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
|.+.-=.|.|-..-...||..|+.+|.+|-++=
T Consensus 3 i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD 35 (267)
T cd02032 3 LAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIG 35 (267)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 555666788999999999999999999998873
No 257
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=20.73 E-value=2e+02 Score=24.70 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=36.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCChhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASR-GVKATILTTPLNISRFE 57 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~~~~~~ 57 (279)
-+++...|+.|=..-+++++..++.. |..|.|++.+.....+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~ 75 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTA 75 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHH
Confidence 56678889999999999999999887 99999999887655443
No 258
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=20.67 E-value=91 Score=26.09 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=17.9
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
+.|+.- -.+.++..+|||+||-++
T Consensus 8 AsG~~G--s~i~~EA~~RGHeVTAiv 31 (211)
T COG2910 8 ASGKAG--SRILKEALKRGHEVTAIV 31 (211)
T ss_pred cCchhH--HHHHHHHHhCCCeeEEEE
Confidence 444443 357888899999999886
No 259
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=20.65 E-value=1.2e+02 Score=26.93 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=23.1
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 26 HQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 26 H~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
.+-++++|.+.|.++|++|.|+|.-.-
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 355899999999999999999987643
No 260
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=20.52 E-value=1.1e+02 Score=25.31 Aligned_cols=38 Identities=11% Similarity=-0.000 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+|++--..+.|=+--.+++.++|.+.|++|+++.|+.-
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 34444344444444446999999999999999987654
No 261
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.52 E-value=1.1e+02 Score=29.17 Aligned_cols=33 Identities=24% Similarity=0.650 Sum_probs=22.2
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 115 ADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
+++.+.+.+||++|... +...+|+++|||.+..
T Consensus 387 ~~~~i~~~~pDllig~~---~~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 387 LEEIIEKYKPDIILTGI---REGELAKKLGVPYINI 419 (457)
T ss_pred HHHHHHhcCCCEEEecC---CcchhhhhcCCCEEEc
Confidence 33444556788887654 4567888888887764
No 262
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=20.45 E-value=97 Score=27.25 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
-.++|++||.||++|.++. ...+++.
T Consensus 19 G~~~A~~lA~~g~~liLva--R~~~kL~ 44 (265)
T COG0300 19 GAELAKQLARRGYNLILVA--RREDKLE 44 (265)
T ss_pred HHHHHHHHHHCCCEEEEEe--CcHHHHH
Confidence 4789999999999998884 4445443
No 263
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=20.38 E-value=1.4e+02 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=27.0
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 19 VPFMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 19 vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
-+=+|.|=..-.++||..|+++|.+|.++=..
T Consensus 6 s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 6 SGKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred cCCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 34478899999999999999999999998543
No 264
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.37 E-value=1.7e+02 Score=27.37 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
..+|+++ |-|+ .-+ .+|+.|+++|++||++...
T Consensus 5 ~k~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 5 GKKVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCEEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCC
Confidence 3456665 5667 444 9999999999999998654
No 265
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=20.11 E-value=2.5e+02 Score=23.25 Aligned_cols=35 Identities=6% Similarity=0.160 Sum_probs=21.0
Q ss_pred HHhcCCCEEEec----CCCCchHHHHHHh-----CCCeEEEecc
Q 044094 119 VRQCQPDAIISD----MNFPWTAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D----~~~~~~~~vA~~l-----giP~v~f~t~ 153 (279)
++..+|||||.| .-...+.++.+++ +++.++|...
T Consensus 43 ~~~~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 43 CDSLRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HhccCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 344679999999 3233344555433 4667777544
No 266
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=20.11 E-value=2.8e+02 Score=23.10 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
.+--|.++.-++.|=....+.+|.+.+.+|.+|.++-
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQ 57 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQ 57 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 3457889999999999999999999999999999873
No 267
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=20.02 E-value=1e+02 Score=24.32 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCeEEEEcCCC
Q 044094 31 IDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 31 l~La~~La~~G~~VT~vtt~~ 51 (279)
..||..|+.+||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 478999999999999998764
Done!