Query 044094
Match_columns 279
No_of_seqs 228 out of 1424
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 19:51:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 8.3E-42 2.8E-46 319.2 22.4 232 10-256 10-251 (454)
2 2acv_A Triterpene UDP-glucosyl 100.0 2.8E-33 9.6E-38 262.9 19.9 232 12-257 8-251 (463)
3 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 1.4E-32 4.7E-37 259.4 17.1 232 11-255 6-260 (482)
4 2c1x_A UDP-glucose flavonoid 3 100.0 1.4E-31 4.8E-36 250.8 21.8 230 13-256 7-249 (456)
5 2vch_A Hydroquinone glucosyltr 100.0 1.5E-30 5.1E-35 245.3 23.4 229 11-256 4-245 (480)
6 2iya_A OLEI, oleandomycin glyc 99.8 1.2E-19 4.3E-24 167.3 15.4 131 10-155 9-141 (424)
7 4amg_A Snogd; transferase, pol 99.6 1.4E-15 4.7E-20 138.6 7.6 133 12-155 21-160 (400)
8 1iir_A Glycosyltransferase GTF 99.5 4.5E-14 1.5E-18 129.9 10.6 123 14-155 1-128 (415)
9 2iyf_A OLED, oleandomycin glyc 99.5 1.5E-13 5.1E-18 126.5 11.6 128 13-155 7-136 (430)
10 3ia7_A CALG4; glycosysltransfe 99.5 1.5E-13 5E-18 124.9 11.3 125 14-153 5-133 (402)
11 3rsc_A CALG2; TDP, enediyne, s 99.5 6.2E-14 2.1E-18 128.4 8.8 135 3-153 10-149 (415)
12 1rrv_A Glycosyltransferase GTF 99.4 1.1E-12 3.8E-17 120.5 8.9 125 14-155 1-129 (416)
13 2yjn_A ERYCIII, glycosyltransf 99.2 3.5E-11 1.2E-15 111.3 10.6 133 12-154 19-175 (441)
14 2p6p_A Glycosyl transferase; X 99.2 4.8E-11 1.6E-15 108.1 11.1 126 14-154 1-138 (384)
15 3oti_A CALG3; calicheamicin, T 99.2 1.1E-10 3.8E-15 106.3 12.4 127 13-153 20-160 (398)
16 3tsa_A SPNG, NDP-rhamnosyltran 99.1 1.9E-10 6.6E-15 104.2 10.5 130 14-154 2-145 (391)
17 4fzr_A SSFS6; structural genom 99.1 1.2E-10 4.1E-15 106.0 8.7 133 11-153 13-153 (398)
18 3h4t_A Glycosyltransferase GTF 99.1 1.8E-10 6.1E-15 105.5 9.3 124 14-155 1-127 (404)
19 3otg_A CALG1; calicheamicin, T 99.0 1.2E-09 4.2E-14 99.4 11.0 130 10-153 17-160 (412)
20 3s2u_A UDP-N-acetylglucosamine 98.4 2.2E-06 7.6E-11 77.3 11.7 116 14-150 3-121 (365)
21 1f0k_A MURG, UDP-N-acetylgluco 97.8 0.00014 4.9E-09 64.4 11.1 119 14-152 7-127 (364)
22 3fro_A GLGA glycogen synthase; 95.0 0.34 1.2E-05 43.1 12.7 39 13-51 2-45 (439)
23 3okp_A GDP-mannose-dependent a 94.9 0.17 5.7E-06 44.5 10.2 111 11-153 2-118 (394)
24 2r60_A Glycosyl transferase, g 94.8 0.089 3E-06 48.5 8.6 124 12-152 6-151 (499)
25 3c48_A Predicted glycosyltrans 94.4 0.16 5.6E-06 45.5 9.2 123 11-153 18-154 (438)
26 2gek_A Phosphatidylinositol ma 94.2 0.088 3E-06 46.6 6.8 116 11-153 18-139 (406)
27 2jjm_A Glycosyl transferase, g 93.7 0.86 2.9E-05 40.1 12.3 121 5-152 7-133 (394)
28 1v4v_A UDP-N-acetylglucosamine 89.6 0.79 2.7E-05 40.1 7.2 112 14-151 6-122 (376)
29 1vgv_A UDP-N-acetylglucosamine 86.6 1.3 4.3E-05 38.8 6.5 112 15-152 2-118 (384)
30 3beo_A UDP-N-acetylglucosamine 86.4 4.9 0.00017 34.7 10.3 42 10-52 5-48 (375)
31 2iuy_A Avigt4, glycosyltransfe 82.3 1.4 4.9E-05 37.8 4.8 28 24-51 30-57 (342)
32 3vue_A GBSS-I, granule-bound s 80.7 1.7 5.9E-05 40.7 5.0 45 6-50 2-52 (536)
33 4hwg_A UDP-N-acetylglucosamine 79.5 2.9 0.0001 37.3 6.0 41 111-151 82-124 (385)
34 2x6q_A Trehalose-synthase TRET 77.2 3.6 0.00012 36.3 5.9 42 11-52 38-81 (416)
35 3hbm_A UDP-sugar hydrolase; PS 77.1 4 0.00014 34.9 5.8 86 22-152 13-101 (282)
36 2iw1_A Lipopolysaccharide core 76.1 2 6.8E-05 37.2 3.7 36 15-50 2-40 (374)
37 2x0d_A WSAF; GT4 family, trans 75.5 1.9 6.4E-05 38.9 3.5 41 11-51 44-89 (413)
38 2wqk_A 5'-nucleotidase SURE; S 74.7 9.5 0.00033 32.0 7.4 99 30-153 17-128 (251)
39 2hy7_A Glucuronosyltransferase 71.1 3 0.0001 37.2 3.7 38 11-50 12-52 (406)
40 1y80_A Predicted cobalamin bin 69.7 9.2 0.00031 30.8 6.1 47 12-58 87-133 (210)
41 1ccw_A Protein (glutamate muta 68.8 8.7 0.0003 28.8 5.3 45 12-56 2-46 (137)
42 3s28_A Sucrose synthase 1; gly 68.7 15 0.00051 36.3 8.3 126 13-150 278-436 (816)
43 1id1_A Putative potassium chan 67.3 5.9 0.0002 29.9 4.2 34 12-50 2-35 (153)
44 2yxb_A Coenzyme B12-dependent 64.1 9.4 0.00032 29.5 4.8 47 11-57 16-62 (161)
45 1psw_A ADP-heptose LPS heptosy 63.7 34 0.0012 29.1 9.0 41 15-55 2-44 (348)
46 3dzc_A UDP-N-acetylglucosamine 62.8 7.4 0.00025 34.6 4.5 41 111-151 99-142 (396)
47 3to5_A CHEY homolog; alpha(5)b 61.8 18 0.00061 26.9 5.9 37 118-154 52-97 (134)
48 1rzu_A Glycogen synthase 1; gl 61.5 7 0.00024 35.3 4.2 37 15-51 2-44 (485)
49 2i2x_B MTAC, methyltransferase 60.7 14 0.00049 30.8 5.7 46 11-56 121-166 (258)
50 3ezx_A MMCP 1, monomethylamine 60.6 18 0.00061 29.4 6.1 47 11-57 90-136 (215)
51 2r8r_A Sensor protein; KDPD, P 60.3 15 0.00051 30.4 5.6 41 11-51 4-44 (228)
52 2qzs_A Glycogen synthase; glyc 59.0 8.5 0.00029 34.7 4.3 37 15-51 2-44 (485)
53 3zqu_A Probable aromatic acid 56.3 18 0.0006 29.4 5.3 45 11-56 2-46 (209)
54 2lpm_A Two-component response 56.2 13 0.00044 27.3 4.1 32 118-149 48-84 (123)
55 3gl9_A Response regulator; bet 55.8 27 0.00093 24.4 5.9 36 119-154 42-86 (122)
56 3ot5_A UDP-N-acetylglucosamine 53.7 13 0.00044 33.2 4.5 41 111-151 102-145 (403)
57 3tov_A Glycosyl transferase fa 47.7 1.2E+02 0.0042 26.0 9.8 47 10-56 5-53 (349)
58 3t6k_A Response regulator rece 47.0 47 0.0016 23.6 6.1 36 119-154 44-88 (136)
59 3lyu_A Putative hydrogenase; t 44.8 13 0.00046 27.8 2.7 37 14-53 19-55 (142)
60 1lss_A TRK system potassium up 44.2 27 0.00093 25.0 4.4 31 14-49 5-35 (140)
61 3m6m_D Sensory/regulatory prot 44.1 41 0.0014 24.3 5.4 35 119-153 54-99 (143)
62 1mvl_A PPC decarboxylase athal 43.9 28 0.00097 28.2 4.7 41 12-54 18-58 (209)
63 3sbx_A Putative uncharacterize 41.9 39 0.0013 26.9 5.1 44 3-47 2-50 (189)
64 3cg0_A Response regulator rece 40.1 63 0.0022 22.7 5.9 36 119-154 50-92 (140)
65 3f6p_A Transcriptional regulat 40.0 58 0.002 22.5 5.5 37 118-154 41-83 (120)
66 3qjg_A Epidermin biosynthesis 39.8 36 0.0012 26.7 4.5 40 14-54 6-45 (175)
67 3pdi_B Nitrogenase MOFE cofact 38.8 33 0.0011 31.3 4.8 32 115-149 367-398 (458)
68 1pq4_A Periplasmic binding pro 36.6 64 0.0022 27.3 6.0 47 116-162 230-278 (291)
69 3lrx_A Putative hydrogenase; a 35.7 22 0.00074 27.1 2.6 38 14-54 24-61 (158)
70 3kkj_A Amine oxidase, flavin-c 35.7 22 0.00075 27.9 2.8 18 30-47 14-31 (336)
71 3c3m_A Response regulator rece 35.4 90 0.0031 22.0 6.1 35 119-153 43-86 (138)
72 2d1p_A TUSD, hypothetical UPF0 35.2 78 0.0027 23.6 5.7 42 8-49 7-52 (140)
73 3bul_A Methionine synthase; tr 35.1 56 0.0019 30.8 5.8 47 12-58 97-143 (579)
74 4g6h_A Rotenone-insensitive NA 34.8 18 0.00062 33.3 2.4 36 10-50 39-74 (502)
75 3h1g_A Chemotaxis protein CHEY 34.0 1E+02 0.0035 21.4 6.1 33 122-154 50-91 (129)
76 2a9o_A Response regulator; ess 33.6 1E+02 0.0035 20.7 6.0 36 119-154 41-82 (120)
77 3gt7_A Sensor protein; structu 33.4 85 0.0029 22.8 5.7 36 118-153 46-90 (154)
78 4b4o_A Epimerase family protei 33.4 24 0.00083 29.4 2.8 31 15-49 2-32 (298)
79 3llv_A Exopolyphosphatase-rela 32.6 42 0.0014 24.4 3.7 31 14-49 7-37 (141)
80 2rdm_A Response regulator rece 31.8 1.1E+02 0.0039 20.9 6.1 35 119-153 45-88 (132)
81 3f8d_A Thioredoxin reductase ( 31.6 29 0.00098 28.9 3.0 42 3-49 5-46 (323)
82 1dbw_A Transcriptional regulat 31.3 91 0.0031 21.5 5.4 36 119-154 43-85 (126)
83 2rjn_A Response regulator rece 31.2 85 0.0029 22.6 5.4 37 118-154 46-89 (154)
84 1zgz_A Torcad operon transcrip 31.1 1.1E+02 0.0037 20.7 5.8 37 118-154 41-83 (122)
85 1tmy_A CHEY protein, TMY; chem 30.9 1.1E+02 0.0037 20.7 5.7 35 120-154 44-85 (120)
86 3b2n_A Uncharacterized protein 30.1 1E+02 0.0035 21.5 5.6 35 119-153 45-86 (133)
87 3a10_A Response regulator; pho 29.9 1.3E+02 0.0043 20.2 6.3 34 119-152 41-81 (116)
88 3nhm_A Response regulator; pro 29.8 1.3E+02 0.0046 20.6 6.2 34 119-152 43-85 (133)
89 1xhf_A DYE resistance, aerobic 29.8 1.2E+02 0.0041 20.5 5.8 36 119-154 43-84 (123)
90 3lqk_A Dipicolinate synthase s 29.6 63 0.0021 25.9 4.5 39 13-52 7-46 (201)
91 1sbz_A Probable aromatic acid 29.4 69 0.0024 25.6 4.7 41 15-56 2-43 (197)
92 2qr3_A Two-component system re 29.1 84 0.0029 22.0 4.9 36 119-154 43-90 (140)
93 1srr_A SPO0F, sporulation resp 28.9 1.1E+02 0.0038 20.8 5.5 35 120-154 44-85 (124)
94 3mcu_A Dipicolinate synthase, 28.7 62 0.0021 26.1 4.3 39 13-52 5-44 (207)
95 2q5c_A NTRC family transcripti 28.7 50 0.0017 26.2 3.8 31 121-154 140-170 (196)
96 3hv2_A Response regulator/HD d 28.6 1.1E+02 0.0037 22.0 5.6 36 118-153 53-95 (153)
97 1xq1_A Putative tropinone redu 28.4 75 0.0026 25.7 5.0 46 1-49 1-46 (266)
98 1kjn_A MTH0777; hypotethical p 28.4 93 0.0032 23.8 4.9 41 16-56 10-51 (157)
99 1o97_C Electron transferring f 28.4 91 0.0031 26.0 5.5 39 115-153 104-148 (264)
100 3lte_A Response regulator; str 28.3 1.2E+02 0.0041 20.9 5.6 36 118-153 45-88 (132)
101 1qzu_A Hypothetical protein MD 28.2 53 0.0018 26.4 3.8 43 11-54 17-60 (206)
102 3grc_A Sensor protein, kinase; 28.2 1.1E+02 0.0039 21.3 5.5 35 118-152 45-88 (140)
103 1efv_B Electron transfer flavo 27.9 94 0.0032 25.8 5.5 39 115-153 108-152 (255)
104 2qxy_A Response regulator; reg 27.9 1E+02 0.0035 21.7 5.2 36 118-154 43-85 (142)
105 1g5t_A COB(I)alamin adenosyltr 27.8 72 0.0025 25.4 4.6 37 13-49 28-64 (196)
106 2gk4_A Conserved hypothetical 27.7 43 0.0015 27.6 3.3 26 24-51 28-53 (232)
107 3pdi_A Nitrogenase MOFE cofact 27.4 52 0.0018 30.2 4.1 34 114-150 392-425 (483)
108 1mb3_A Cell division response 27.3 1.1E+02 0.0039 20.7 5.3 34 119-152 41-83 (124)
109 3cz5_A Two-component response 27.2 1.5E+02 0.005 21.2 6.1 36 119-154 47-89 (153)
110 1mio_B Nitrogenase molybdenum 27.1 65 0.0022 29.2 4.7 32 115-149 377-408 (458)
111 3i1j_A Oxidoreductase, short c 27.1 1.2E+02 0.0042 24.0 6.1 31 15-48 15-45 (247)
112 3p9x_A Phosphoribosylglycinami 27.0 42 0.0014 27.2 3.0 31 123-153 31-61 (211)
113 2qzj_A Two-component response 26.8 1E+02 0.0034 21.7 5.0 36 119-154 44-85 (136)
114 3eod_A Protein HNR; response r 26.8 1.2E+02 0.0042 20.8 5.4 36 118-153 46-88 (130)
115 4b4t_W RPN10, 26S proteasome r 26.7 1.1E+02 0.0037 25.7 5.7 64 14-77 108-175 (268)
116 1efp_B ETF, protein (electron 26.3 91 0.0031 25.8 5.1 38 116-153 106-149 (252)
117 4dad_A Putative pilus assembly 26.2 71 0.0024 22.8 4.1 40 114-153 57-104 (146)
118 3crn_A Response regulator rece 26.2 1.3E+02 0.0045 20.9 5.5 35 119-153 43-84 (132)
119 2gkg_A Response regulator homo 26.0 1.2E+02 0.0039 20.6 5.1 32 119-150 45-86 (127)
120 4e7p_A Response regulator; DNA 25.7 1.2E+02 0.0043 21.6 5.4 37 117-153 60-103 (150)
121 2pl1_A Transcriptional regulat 25.6 1.5E+02 0.0053 19.8 6.2 36 119-154 40-82 (121)
122 4eg0_A D-alanine--D-alanine li 25.6 1.2E+02 0.0041 25.4 5.9 38 13-51 13-55 (317)
123 3mc3_A DSRE/DSRF-like family p 25.3 1E+02 0.0034 22.6 4.7 28 23-50 28-55 (134)
124 3cfy_A Putative LUXO repressor 25.2 1.3E+02 0.0044 21.1 5.4 34 120-153 45-85 (137)
125 1p6q_A CHEY2; chemotaxis, sign 25.2 1.2E+02 0.0042 20.7 5.1 25 119-143 47-73 (129)
126 3u7q_A Nitrogenase molybdenum- 25.0 62 0.0021 29.7 4.1 33 114-149 408-440 (492)
127 1p3y_1 MRSD protein; flavoprot 24.9 61 0.0021 25.8 3.6 40 13-53 8-47 (194)
128 2etv_A Iron(III) ABC transport 24.8 67 0.0023 27.6 4.2 37 115-152 89-126 (346)
129 1kgs_A DRRD, DNA binding respo 24.8 1.5E+02 0.0052 22.8 6.1 36 119-154 42-84 (225)
130 3eul_A Possible nitrate/nitrit 24.7 1.4E+02 0.0046 21.4 5.5 37 117-153 55-98 (152)
131 3gi1_A LBP, laminin-binding pr 24.3 1.1E+02 0.0037 25.8 5.3 34 119-152 224-259 (286)
132 3kht_A Response regulator; PSI 24.2 1.6E+02 0.0053 20.7 5.7 36 118-153 46-90 (144)
133 3dm5_A SRP54, signal recogniti 23.9 1.6E+02 0.0054 26.7 6.6 41 13-53 100-140 (443)
134 3cu5_A Two component transcrip 23.8 1.4E+02 0.0047 21.1 5.3 24 119-142 45-70 (141)
135 3h5i_A Response regulator/sens 23.7 1.7E+02 0.0059 20.4 5.8 30 122-151 49-85 (140)
136 1g63_A Epidermin modifying enz 23.6 64 0.0022 25.4 3.4 39 15-54 4-42 (181)
137 1yrb_A ATP(GTP)binding protein 23.4 1.3E+02 0.0045 24.1 5.6 41 10-51 11-51 (262)
138 2b4a_A BH3024; flavodoxin-like 23.4 1.3E+02 0.0045 20.9 5.1 35 117-151 53-95 (138)
139 1ys7_A Transcriptional regulat 23.3 1.6E+02 0.0056 22.8 6.1 34 119-152 47-87 (233)
140 1qkk_A DCTD, C4-dicarboxylate 22.8 1.2E+02 0.004 21.8 4.8 36 119-154 43-85 (155)
141 2zay_A Response regulator rece 22.8 1.8E+02 0.0063 20.3 5.9 37 118-154 47-92 (147)
142 2pju_A Propionate catabolism o 22.8 85 0.0029 25.6 4.1 37 113-152 141-180 (225)
143 3o26_A Salutaridine reductase; 22.7 82 0.0028 26.0 4.2 31 15-48 13-43 (311)
144 1a04_A Nitrate/nitrite respons 22.6 1.4E+02 0.0048 22.9 5.5 36 119-154 47-89 (215)
145 3r0j_A Possible two component 22.6 1.6E+02 0.0054 23.4 5.9 37 118-154 62-105 (250)
146 3f67_A Putative dienelactone h 22.4 1.5E+02 0.0053 22.6 5.7 35 14-49 33-67 (241)
147 2jk1_A HUPR, hydrogenase trans 22.2 1.2E+02 0.0042 21.2 4.7 35 119-153 40-81 (139)
148 2g1u_A Hypothetical protein TM 21.8 66 0.0022 23.9 3.1 33 12-49 18-50 (155)
149 3n53_A Response regulator rece 21.7 1.2E+02 0.0041 21.3 4.5 16 119-134 42-57 (140)
150 3jte_A Response regulator rece 21.6 1.8E+02 0.0063 20.2 5.6 33 121-153 47-86 (143)
151 3eag_A UDP-N-acetylmuramate:L- 21.6 77 0.0026 27.1 3.9 32 14-49 5-36 (326)
152 1jbe_A Chemotaxis protein CHEY 21.6 2E+02 0.0067 19.5 5.8 35 119-153 45-88 (128)
153 3q9s_A DNA-binding response re 21.6 1.6E+02 0.0054 23.6 5.7 37 118-154 76-118 (249)
154 1sez_A Protoporphyrinogen oxid 21.5 49 0.0017 29.8 2.7 43 1-48 1-43 (504)
155 3rqi_A Response regulator prot 21.5 97 0.0033 23.4 4.2 37 118-154 46-89 (184)
156 2j48_A Two-component sensor ki 21.4 1.8E+02 0.0061 19.1 5.7 35 119-153 41-84 (119)
157 3bfv_A CAPA1, CAPB2, membrane 21.4 1.3E+02 0.0045 24.8 5.2 39 13-51 81-121 (271)
158 2ejb_A Probable aromatic acid 21.2 1.3E+02 0.0043 23.7 4.8 42 15-57 3-44 (189)
159 1yio_A Response regulatory pro 21.1 1.1E+02 0.0039 23.3 4.6 35 119-153 44-85 (208)
160 2pjk_A 178AA long hypothetical 21.1 1.8E+02 0.006 22.5 5.6 60 1-60 3-73 (178)
161 1p9o_A Phosphopantothenoylcyst 21.0 57 0.0019 28.2 2.8 26 25-52 65-90 (313)
162 2bon_A Lipid kinase; DAG kinas 20.9 1.2E+02 0.0041 25.9 5.0 36 15-50 31-66 (332)
163 3oy2_A Glycosyltransferase B73 20.9 73 0.0025 27.5 3.7 36 15-51 2-40 (413)
164 2qs7_A Uncharacterized protein 20.7 1E+02 0.0034 23.0 3.9 35 18-52 13-47 (144)
165 4dxk_A Mandelate racemase / mu 20.7 2.6E+02 0.0088 24.6 7.3 53 113-165 274-333 (400)
166 2oqr_A Sensory transduction pr 20.5 1.8E+02 0.006 22.6 5.7 36 119-154 44-85 (230)
167 3c97_A Signal transduction his 20.5 2.2E+02 0.0076 19.8 6.1 24 119-142 50-75 (140)
168 3cnb_A DNA-binding response re 20.3 2E+02 0.007 19.8 5.6 36 118-153 49-93 (143)
169 2xdq_B Light-independent proto 20.2 83 0.0028 28.9 4.0 32 116-150 365-396 (511)
170 2prs_A High-affinity zinc upta 20.2 1.6E+02 0.0055 24.5 5.6 37 117-153 217-255 (284)
171 1mvo_A PHOP response regulator 20.2 2.2E+02 0.0074 19.5 5.9 33 119-151 43-82 (136)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=8.3e-42 Score=319.18 Aligned_cols=232 Identities=19% Similarity=0.267 Sum_probs=180.5
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASRG--VKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPP 87 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G--~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 87 (279)
..+++|||++|||+|||++||++|||+|++|| ++|||++|+.+..++.+.... ..++|+|+.+| +++|+
T Consensus 10 ~~~~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~----~~~~i~~~~ip-----dglp~ 80 (454)
T 3hbf_A 10 GNNLLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNE----FLPNIKYYNVH-----DGLPK 80 (454)
T ss_dssp --CCCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSC----CCTTEEEEECC-----CCCCT
T ss_pred CCCCCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhccccc----CCCCceEEecC-----CCCCC
Confidence 45578999999999999999999999999999 999999998777666432210 12469999987 58888
Q ss_pred CCCCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHh--cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHH
Q 044094 88 NCENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQ--CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAA 164 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~ 164 (279)
+.+...+ +. ..+..+.++. ..+++.+++++++ .+++|||+|+|++|+.+||+++|||+++|||++|+++++++++
T Consensus 81 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~ 158 (454)
T 3hbf_A 81 GYVSSGN-PR-EPIFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYT 158 (454)
T ss_dssp TCCCCSC-TT-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTH
T ss_pred CccccCC-hH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhh
Confidence 7655432 11 3344555555 3577778777665 5799999999999999999999999999999999999999988
Q ss_pred HhcCCCCC--CCCCCCccc-cCCCCCCcccCCCCCCCCcCC-CC-cHHHHHHHHHHHHhccCEEEEcccccchHHHHHHH
Q 044094 165 AQHKPNVN--VSSDTETFL-VPGLPRPVYITQSQMPDQFFG-NT-DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHY 239 (279)
Q Consensus 165 ~~~~~~~~--~~~~~~~~~-iPglp~~~~l~~~dlp~~~~~-~~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 239 (279)
+.+..... ...+++.+. +||+|+ ++.+|||+++.. .+ .+..++.++.+.+.++++||+|||+|||+++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~iPg~p~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~ 235 (454)
T 3hbf_A 159 DLIREKTGSKEVHDVKSIDVLPGFPE---LKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENEL 235 (454)
T ss_dssp HHHHHTCCHHHHTTSSCBCCSTTSCC---BCGGGSCTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHH
T ss_pred HHHHhhcCCCccccccccccCCCCCC---cChhhCchhhccCCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHH
Confidence 75421110 011233454 899986 899999998863 22 35567777778889999999999999999999999
Q ss_pred HHhcCCceEEeccccCC
Q 044094 240 EKVTGKVVYPVGPVSLF 256 (279)
Q Consensus 240 ~~~~~~~v~~VGPl~~~ 256 (279)
+... +++|+|||+++.
T Consensus 236 ~~~~-~~v~~vGPl~~~ 251 (454)
T 3hbf_A 236 NSKF-KLLLNVGPFNLT 251 (454)
T ss_dssp HTTS-SCEEECCCHHHH
T ss_pred HhcC-CCEEEECCcccc
Confidence 9876 689999999753
No 2
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=2.8e-33 Score=262.86 Aligned_cols=232 Identities=19% Similarity=0.295 Sum_probs=167.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCCChhh-hhhccccCCCCCCCCeEEEEecCCCCCCCCCCC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASR--GVKATILTTPLNISR-FESSINRDDYHHHNPIKLLLLNFPSTAANLPPN 88 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~vtt~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~ 88 (279)
+++|||++|+|++||++||++|||+|++| ||+|||++|+.+..+ +.+.+.+... ...+++|+.+|.. .+|+.
T Consensus 8 ~~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~----~~~~~ 82 (463)
T 2acv_A 8 KNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLA-SQPQIQLIDLPEV----EPPPQ 82 (463)
T ss_dssp HCEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHHHC-SCTTEEEEECCCC----CCCCG
T ss_pred CCCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhccc-CCCCceEEECCCC----CCCcc
Confidence 45799999999999999999999999999 999999999876421 1111110000 1235999988732 13321
Q ss_pred CCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHh---cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHH
Q 044094 89 CENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQ---CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAA 165 (279)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~---~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~ 165 (279)
+.. ...... +...+..+.+.+++++++ .++||||+|.++.|+.++|+++|||+++||+++++.++++++++
T Consensus 83 -~~~---~~~~~~--~~~~~~~~~~~~~~ll~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~ 156 (463)
T 2acv_A 83 -ELL---KSPEFY--ILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLK 156 (463)
T ss_dssp -GGG---GSHHHH--HHHHHHHTHHHHHHHHHHHCCTTEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGG
T ss_pred -ccc---CCccHH--HHHHHHhhhHHHHHHHHhccCCCCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHH
Confidence 111 111111 444455667788888877 68999999999999999999999999999999999999998888
Q ss_pred hcCCCCCCCCCCC---ccccCCC-CCCcccCCCCCCCCcCCCCcHHHHHHHHHHHHhccCEEEEcccccchHHHHHHHHH
Q 044094 166 QHKPNVNVSSDTE---TFLVPGL-PRPVYITQSQMPDQFFGNTDLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHYEK 241 (279)
Q Consensus 166 ~~~~~~~~~~~~~---~~~iPgl-p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~ 241 (279)
.+.......+.++ ...+||+ ++ ++.+|+|..+.+.......+.+..+..++++|+++|||+|||+++++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~pg~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~ 233 (463)
T 2acv_A 157 NRQIEEVFDDSDRDHQLLNIPGISNQ---VPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYD 233 (463)
T ss_dssp GSCTTCCCCCSSGGGCEECCTTCSSC---EEGGGSCHHHHCTTTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHH
T ss_pred hhcccCCCCCccccCceeECCCCCCC---CChHHCchhhcCCchHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHh
Confidence 6531112222222 4568998 65 788899865543222334444555667899999999999999999999987
Q ss_pred hc--CCceEEeccccCCC
Q 044094 242 VT--GKVVYPVGPVSLFN 257 (279)
Q Consensus 242 ~~--~~~v~~VGPl~~~~ 257 (279)
.. .+++++|||++...
T Consensus 234 ~~~p~~~v~~vGpl~~~~ 251 (463)
T 2acv_A 234 HDEKIPPIYAVGPLLDLK 251 (463)
T ss_dssp HCTTSCCEEECCCCCCSS
T ss_pred ccccCCcEEEeCCCcccc
Confidence 55 57899999998653
No 3
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=1.4e-32 Score=259.36 Aligned_cols=232 Identities=19% Similarity=0.348 Sum_probs=161.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCC-CCeEEEEecCCCCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHH-NPIKLLLLNFPSTAANLPPNC 89 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~-~~i~~~~lp~~~~~~~lp~~~ 89 (279)
++++||+++|+|++||+|||++||++|++|||+|||++++.+..++.+....... .+ ++++|+.+| +++|+..
T Consensus 6 ~~~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~-~~~~~i~~~~l~-----~~lp~~~ 79 (482)
T 2pq6_A 6 NRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAF-DGFTDFNFESIP-----DGLTPME 79 (482)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC-------------CEEEEEEC-----CCCC---
T ss_pred CCCCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccc-cCCCceEEEECC-----CCCCCcc
Confidence 4457999999999999999999999999999999999998877666442111000 11 359999887 3566521
Q ss_pred CCCCCCCCcchHHHHHHHH-HHhHHHHHHHHHh-------cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHH
Q 044094 90 ENLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQ-------CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLS 161 (279)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~-------~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~ 161 (279)
.+.. .. .....++..+ ..+.+.+++++++ .++||||+|.++.|+.++|+++|||++.||+++++.+..+
T Consensus 80 ~~~~-~~--~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~ 156 (482)
T 2pq6_A 80 GDGD-VS--QDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNV 156 (482)
T ss_dssp ---------CCHHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHH
T ss_pred cccC-cc--hhHHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHH
Confidence 0011 11 1123344444 4566777777764 4799999999999999999999999999999999888777
Q ss_pred HHHHhc--CCCCCCC-----CC---CCcc-ccCCCCCCcccCCCCCCCCcCCC---CcHHHHHHHHHHHHhccCEEEEcc
Q 044094 162 VAAAQH--KPNVNVS-----SD---TETF-LVPGLPRPVYITQSQMPDQFFGN---TDLQEFFEKLIKAERNSYGVVANT 227 (279)
Q Consensus 162 ~~~~~~--~~~~~~~-----~~---~~~~-~iPglp~~~~l~~~dlp~~~~~~---~~~~~~~~~~~~~~~~a~~vlvNT 227 (279)
++++.. ....+.. .. +..+ .+||++. ++.+++|.++... +.+..++....+...+++++|+||
T Consensus 157 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt 233 (482)
T 2pq6_A 157 MHFRSFVERGIIPFKDESYLTNGCLETKVDWIPGLKN---FRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNT 233 (482)
T ss_dssp TTHHHHHHTTCSSCSSGGGGTSSGGGCBCCSSTTCCS---CBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESS
T ss_pred HHHHHHHhcCCCCCccccccccccccCccccCCCCCC---CchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcC
Confidence 655532 1111111 11 1222 3789886 7888999776532 223444545555667899999999
Q ss_pred cccchHHHHHHHHHhcCCceEEeccccC
Q 044094 228 FFEIEPDYIKHYEKVTGKVVYPVGPVSL 255 (279)
Q Consensus 228 f~eLE~~~~~~l~~~~~~~v~~VGPl~~ 255 (279)
|++||++++++++... +++++|||++.
T Consensus 234 ~~~le~~~~~~~~~~~-~~v~~VGPl~~ 260 (482)
T 2pq6_A 234 FNELESDVINALSSTI-PSIYPIGPLPS 260 (482)
T ss_dssp CGGGGHHHHHHHHTTC-TTEEECCCHHH
T ss_pred hHHHhHHHHHHHHHhC-CcEEEEcCCcc
Confidence 9999999999999877 78999999975
No 4
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=1.4e-31 Score=250.83 Aligned_cols=230 Identities=15% Similarity=0.222 Sum_probs=161.8
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCC
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRG--VKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCE 90 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G--~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~ 90 (279)
+.||+++|+|++||++||++|||+|++|| +.|||++++.+..++....... ...+|+++.++ +++|++.+
T Consensus 7 ~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~---~~~~i~~~~i~-----~glp~~~~ 78 (456)
T 2c1x_A 7 NPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHT---MQCNIKSYDIS-----DGVPEGYV 78 (456)
T ss_dssp CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC----------CTTEEEEECC-----CCCCTTCC
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhcccccc---CCCceEEEeCC-----CCCCCccc
Confidence 46999999999999999999999999985 6678899876555443321100 02359998876 46776643
Q ss_pred CCCCCCCcchHHHHHHHH-HHhHHHHHHHHHh--cCCCEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHHHHHhc
Q 044094 91 NLDAIPSRDLSYNFSKAI-MMLHPQADDLVRQ--CQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSVAAAQH 167 (279)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~-~~l~~~l~~ll~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~~~ 167 (279)
... .+ ...+..+.... ..+++.+++++++ .++||||+|.++.|+.++|+++|||++.||+++++.++.+++.+.+
T Consensus 79 ~~~-~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~ 156 (456)
T 2c1x_A 79 FAG-RP-QEDIELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEI 156 (456)
T ss_dssp CCC-CT-THHHHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHH
T ss_pred ccC-Ch-HHHHHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHH
Confidence 211 11 12333444443 3455666666544 5899999999999999999999999999999999888877655432
Q ss_pred C---CCCCC-CCCCCcc-ccCCCCCCcccCCCCCCCCcCCCC---cHHHHHHHHHHHHhccCEEEEcccccchHHHHHHH
Q 044094 168 K---PNVNV-SSDTETF-LVPGLPRPVYITQSQMPDQFFGNT---DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHY 239 (279)
Q Consensus 168 ~---~~~~~-~~~~~~~-~iPglp~~~~l~~~dlp~~~~~~~---~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 239 (279)
. ..... ....+.+ .+||+++ ++.+|+|..+.... .+..++.+..+..++++++|+|||+|||+++++++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~pg~~~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~ 233 (456)
T 2c1x_A 157 REKIGVSGIQGREDELLNFIPGMSK---VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDL 233 (456)
T ss_dssp HHHHCSSCCTTCTTCBCTTSTTCTT---CBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHH
T ss_pred HhccCCcccccccccccccCCCCCc---ccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHH
Confidence 1 11110 1112223 4899986 78899997654221 23455555556678899999999999999999999
Q ss_pred HHhcCCceEEeccccCC
Q 044094 240 EKVTGKVVYPVGPVSLF 256 (279)
Q Consensus 240 ~~~~~~~v~~VGPl~~~ 256 (279)
+..+ +++++|||++..
T Consensus 234 ~~~~-~~~~~vGpl~~~ 249 (456)
T 2c1x_A 234 KSKL-KTYLNIGPFNLI 249 (456)
T ss_dssp HHHS-SCEEECCCHHHH
T ss_pred HhcC-CCEEEecCcccC
Confidence 9876 689999999753
No 5
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=99.97 E-value=1.5e-30 Score=245.34 Aligned_cols=229 Identities=20% Similarity=0.312 Sum_probs=162.1
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCC--hhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASR-GVKATILTTPLN--ISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPP 87 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~--~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~ 87 (279)
.++.||+++|+|++||++||++||++|++| ||+|||++++.+ ...+..... . ...+++|+.++.. .+++
T Consensus 4 ~~~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~-~---~~~~i~~~~l~~~----~~~~ 75 (480)
T 2vch_A 4 SKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD-S---LPSSISSVFLPPV----DLTD 75 (480)
T ss_dssp --CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC-----CCTTEEEEECCCC----CCTT
T ss_pred CCCcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhcc-c---cCCCceEEEcCCC----CCCC
Confidence 345799999999999999999999999998 999999999874 233322100 0 0235999988742 1221
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHh----cCC-CEEEecCCCCchHHHHHHhCCCeEEEeccchHHHHHHH
Q 044094 88 NCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQ----CQP-DAIISDMNFPWTAEIARKYGIPRLVYHGTCCFSLSLSV 162 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~----~~~-d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a~~~~~~~ 162 (279)
. . . .. .....+......+.+.+++++++ .++ ||||+|.++.|+.++|+++|||++.||+++++.+++++
T Consensus 76 ~-~--~-~~--~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~ 149 (480)
T 2vch_A 76 L-S--S-ST--RIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFL 149 (480)
T ss_dssp S-C--T-TC--CHHHHHHHHHHTTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHH
T ss_pred C-C--C-ch--hHHHHHHHHHHhhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHH
Confidence 1 1 1 11 22333444445666778887765 378 99999999999999999999999999999999999988
Q ss_pred HHHhcC--CCCCCCCCCCccccCCCCCCcccCCCCCCCCcCCCC-cHHHHHHHHHHHHhccCEEEEcccccchHHHHHHH
Q 044094 163 AAAQHK--PNVNVSSDTETFLVPGLPRPVYITQSQMPDQFFGNT-DLQEFFEKLIKAERNSYGVVANTFFEIEPDYIKHY 239 (279)
Q Consensus 163 ~~~~~~--~~~~~~~~~~~~~iPglp~~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 239 (279)
+++... ......+..+...+||+++ ++..++|..+.+.. .....+.+..+.+++++|+++|||+|||+.++.++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Pg~~p---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l 226 (480)
T 2vch_A 150 HLPKLDETVSCEFRELTEPLMLPGCVP---VAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKAL 226 (480)
T ss_dssp HHHHHHHHCCSCGGGCSSCBCCTTCCC---BCGGGSCGGGSCTTSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccCCCCCC---CChHHCchhhhcCCchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHH
Confidence 877432 1111111123356799986 78889998765422 23334444556678899999999999999999999
Q ss_pred HHhc--CCceEEeccccCC
Q 044094 240 EKVT--GKVVYPVGPVSLF 256 (279)
Q Consensus 240 ~~~~--~~~v~~VGPl~~~ 256 (279)
++.. .+++++|||++..
T Consensus 227 ~~~~~~~~~v~~vGpl~~~ 245 (480)
T 2vch_A 227 QEPGLDKPPVYPVGPLVNI 245 (480)
T ss_dssp HSCCTTCCCEEECCCCCCC
T ss_pred HhcccCCCcEEEEeccccc
Confidence 8521 2589999999764
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.82 E-value=1.2e-19 Score=167.32 Aligned_cols=131 Identities=18% Similarity=0.245 Sum_probs=95.0
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNC 89 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~ 89 (279)
.+..+||+++++|++||++|++.||++|+++||+|||++++.+.+.+.. .+ ++++.++. +++.+.
T Consensus 9 ~m~~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~--------~g--~~~~~~~~-----~~~~~~ 73 (424)
T 2iya_A 9 SVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKA--------AG--ATPVVYDS-----ILPKES 73 (424)
T ss_dssp --CCCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH--------HT--CEEEECCC-----CSCCTT
T ss_pred CcccceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHh--------CC--CEEEecCc-----cccccc
Confidence 4556799999999999999999999999999999999999877665543 22 77877652 344332
Q ss_pred CCCCCCCC--cchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccch
Q 044094 90 ENLDAIPS--RDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 90 ~~~~~~~~--~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a 155 (279)
......+. ...+..+......+.+.+.+++++.+|||||+|.++.|+..+|+++|||++.+++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~ 141 (424)
T 2iya_A 74 NPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADDRPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFV 141 (424)
T ss_dssp CTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTTTSCCSEEEEETTCTHHHHHHHHHTCCEEEEESSCC
T ss_pred cchhhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEcCcccHHHHHHHhcCCCEEEEecccc
Confidence 11011111 0112222333344556777778778999999999999999999999999999998875
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.59 E-value=1.4e-15 Score=138.58 Aligned_cols=133 Identities=12% Similarity=0.082 Sum_probs=85.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCC--CCCCCCC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTA--ANLPPNC 89 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~--~~lp~~~ 89 (279)
+.+||||+|+|++||++||+.||++|++|||+|||+|++.+...... .+.++.+...... ...+...
T Consensus 21 ~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~ 89 (400)
T 4amg_A 21 QSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVAEA-----------GLCAVDVSPGVNYAKLFVPDDT 89 (400)
T ss_dssp CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHHTT-----------TCEEEESSTTCCSHHHHSCCC-
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHHhc-----------CCeeEecCCchhHhhhcccccc
Confidence 45799999999999999999999999999999999998876543321 2445544210000 0001110
Q ss_pred CCCCCCCC----cchHHHHH-HHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccch
Q 044094 90 ENLDAIPS----RDLSYNFS-KAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 90 ~~~~~~~~----~~~~~~~~-~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a 155 (279)
........ .......+ .........+.+++++.+||+||+|.+..|+..+|+++|||++.+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~ 160 (400)
T 4amg_A 90 DVTDPMHSEGLGEGFFAEMFARVSAVAVDGALRTARSWRPDLVVHTPTQGAGPLTAAALQLPCVELPLGPA 160 (400)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHTTCCEEECCSSTT
T ss_pred ccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHcCCCceeeccccc
Confidence 00000000 01111111 11223345556667778999999999999999999999999999876543
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.51 E-value=4.5e-14 Score=129.88 Aligned_cols=123 Identities=13% Similarity=0.135 Sum_probs=84.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
+||++++++++||++|++.||++|+++||+|||++++...+.+.. . +++++.++.. ..+..+...
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~--------~--g~~~~~i~~~-----~~~~~~~~~ 65 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAE--------V--GVPHVPVGPS-----ARAPIQRAK 65 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH--------T--TCCEEECCC------------CCS
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHH--------c--CCeeeeCCCC-----HHHHhhccc
Confidence 489999999999999999999999999999999999876544433 2 3788877632 111111111
Q ss_pred CCCCcchHHHHHHHHH-HhHHHHHHHHH-hcCCCEEEecC-CCCc--hHHHHHHhCCCeEEEeccch
Q 044094 94 AIPSRDLSYNFSKAIM-MLHPQADDLVR-QCQPDAIISDM-NFPW--TAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~l~~~l~~ll~-~~~~d~vI~D~-~~~~--~~~vA~~lgiP~v~f~t~~a 155 (279)
. ... ..+..... .....++++.+ ..+|||||+|. +..| +..+|+++|||++.++++++
T Consensus 66 ~--~~~--~~~~~~~~~~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~ 128 (415)
T 1iir_A 66 P--LTA--EDVRRFTTEAIATQFDEIPAAAEGCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPS 128 (415)
T ss_dssp C--CCH--HHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGG
T ss_pred c--cch--HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCC
Confidence 0 001 11111111 22344555554 46899999998 6778 89999999999999998764
No 9
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.48 E-value=1.5e-13 Score=126.52 Aligned_cols=128 Identities=20% Similarity=0.298 Sum_probs=89.1
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENL 92 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~ 92 (279)
.+||+++++++.||++|++.|+++|+++||+||++++....+.+.. .+++++.++. .++.+....
T Consensus 7 m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~----------~g~~~~~~~~-----~~~~~~~~~ 71 (430)
T 2iyf_A 7 PAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAA----------TGPRPVLYHS-----TLPGPDADP 71 (430)
T ss_dssp -CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHT----------TSCEEEECCC-----CSCCTTSCG
T ss_pred cceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHh----------CCCEEEEcCC-----cCccccccc
Confidence 4699999999999999999999999999999999998876444432 2377776652 223222110
Q ss_pred CCCC-C-cchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccch
Q 044094 93 DAIP-S-RDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 93 ~~~~-~-~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~a 155 (279)
...+ . ...+..+......+...+.+++++.+|||||+|.+..|+..+|+++|||++.+++...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (430)
T 2iyf_A 72 EAWGSTLLDNVEPFLNDAIQALPQLADAYADDIPDLVLHDITSYPARVLARRWGVPAVSLSPNLV 136 (430)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHHHHHHHHHTTSCCSEEEEETTCHHHHHHHHHHTCCEEEEESSCC
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEECCccHHHHHHHHHcCCCEEEEecccc
Confidence 0001 1 0111122222334456677778778999999999878899999999999999987653
No 10
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.48 E-value=1.5e-13 Score=124.90 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=86.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
.||+++++++.||++|++.||++|+++||+|+|++++.+.+.+.. .+ ++++.++.. ++.......
T Consensus 5 ~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~--------~G--~~~~~~~~~-----~~~~~~~~~ 69 (402)
T 3ia7_A 5 RHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKA--------AG--AEVVLYKSE-----FDTFHVPEV 69 (402)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH--------TT--CEEEECCCG-----GGTSSSSSS
T ss_pred CEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHH--------cC--CEEEecccc-----ccccccccc
Confidence 599999999999999999999999999999999998765555543 23 778777531 111100000
Q ss_pred CCCC--cchHHH-HHHHHHHhHHHHHHHHHhcCCCEEEec-CCCCchHHHHHHhCCCeEEEecc
Q 044094 94 AIPS--RDLSYN-FSKAIMMLHPQADDLVRQCQPDAIISD-MNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 94 ~~~~--~~~~~~-~~~~~~~l~~~l~~ll~~~~~d~vI~D-~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
.... ...+.. +......+...+.+++++.+||+||+| .+..|+..+|+++|||++.+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~ 133 (402)
T 3ia7_A 70 VKQEDAETQLHLVYVRENVAILRAAEEALGDNPPDLVVYDVFPFIAGRLLAARWDRPAVRLTGG 133 (402)
T ss_dssp SCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEESTTHHHHHHHHHHHTCCEEEEESS
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchHHHHHHHHHHhhCCCEEEEecc
Confidence 0111 011112 222223344667777777899999999 77888999999999999998743
No 11
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.48 E-value=6.2e-14 Score=128.40 Aligned_cols=135 Identities=12% Similarity=0.101 Sum_probs=89.6
Q ss_pred CCCCCCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCC
Q 044094 3 PSSTKTHDHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTA 82 (279)
Q Consensus 3 ~~~~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~ 82 (279)
|++...+.....||+++++++.||++|++.||++|.++||+|+|++++...+.+.. .+ ++++.++.+
T Consensus 10 ~~~~~~~~~~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~--------~G--~~~~~~~~~--- 76 (415)
T 3rsc_A 10 HSSGHIEGRHMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRA--------AG--ATVVPYQSE--- 76 (415)
T ss_dssp ---------CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHH--------TT--CEEEECCCS---
T ss_pred cccCCcCcccCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHh--------cC--CEEEecccc---
Confidence 34444445566799999999999999999999999999999999998776665543 23 778877531
Q ss_pred CCCCCCCC---CCCCCCCcchHHH-HHHHHHHhHHHHHHHHHhcCCCEEEec-CCCCchHHHHHHhCCCeEEEecc
Q 044094 83 ANLPPNCE---NLDAIPSRDLSYN-FSKAIMMLHPQADDLVRQCQPDAIISD-MNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 83 ~~lp~~~~---~~~~~~~~~~~~~-~~~~~~~l~~~l~~ll~~~~~d~vI~D-~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
++.... .....+ ...+.. +......+...+.+++++.+||+||+| .+..|+..+|+++|||++.+.+.
T Consensus 77 --~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~ 149 (415)
T 3rsc_A 77 --IIDADAAEVFGSDDL-GVRPHLMYLRENVSVLRATAEALDGDVPDLVLYDDFPFIAGQLLAARWRRPAVRLSAA 149 (415)
T ss_dssp --TTTCCHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHSSSCCSEEEEESTTHHHHHHHHHHTTCCEEEEESS
T ss_pred --ccccccchhhccccH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEECchhhhHHHHHHHHhCCCEEEEEec
Confidence 221100 000000 011222 333333445667777778899999999 77788899999999999998743
No 12
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.36 E-value=1.1e-12 Score=120.47 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=81.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
+||++++++++||++|++.||++|+++||+|||++++...+.+.. .+ ++++.++... .+.+... ..
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~--------~g--~~~~~~~~~~-~~~~~~~---~~ 66 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAE--------VG--VPHVPVGLPQ-HMMLQEG---MP 66 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH--------HT--CCEEECSCCG-GGCCCTT---SC
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHH--------cC--CeeeecCCCH-HHHHhhc---cc
Confidence 389999999999999999999999999999999998875544443 12 7788776320 0011110 00
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHH-hcCCCEEEecCC-CCc--hHHHHHHhCCCeEEEeccch
Q 044094 94 AIPSRDLSYNFSKAIMMLHPQADDLVR-QCQPDAIISDMN-FPW--TAEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~l~~ll~-~~~~d~vI~D~~-~~~--~~~vA~~lgiP~v~f~t~~a 155 (279)
. .....+..++.. .....++.+.+ ..+|||||+|.+ ..| +..+|+++|||++.++++++
T Consensus 67 ~-~~~~~~~~~~~~--~~~~~~~~l~~~~~~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~ 129 (416)
T 1rrv_A 67 P-PPPEEEQRLAAM--TVEMQFDAVPGAAEGCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPV 129 (416)
T ss_dssp C-CCHHHHHHHHHH--HHHHHHHHHHHHTTTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGG
T ss_pred c-chhHHHHHHHHH--HHHHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 0 000011112211 12233333332 368999999974 456 78899999999999987764
No 13
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.22 E-value=3.5e-11 Score=111.33 Aligned_cols=133 Identities=13% Similarity=0.172 Sum_probs=83.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCC-C
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNC-E 90 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~-~ 90 (279)
..+||+++++++.||++|++.||++|.++||+|+|++++...+.+.. . +++++.++......++.... .
T Consensus 19 ~~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~--------~--G~~~~~i~~~~~~~~~~~~~~~ 88 (441)
T 2yjn_A 19 SHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITA--------A--GLTAVPVGTDVDLVDFMTHAGH 88 (441)
T ss_dssp CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHT--------T--TCCEEECSCCCCHHHHHHHTTH
T ss_pred CccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHh--------C--CCceeecCCccchHHHhhhhhc
Confidence 34699999999999999999999999999999999998765444432 2 37888775310000000000 0
Q ss_pred CC------CCC----CC---cchHHHHHHHHH---------H-hHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCe
Q 044094 91 NL------DAI----PS---RDLSYNFSKAIM---------M-LHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPR 147 (279)
Q Consensus 91 ~~------~~~----~~---~~~~~~~~~~~~---------~-l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~ 147 (279)
.. .+. +. ...+........ . ....+.+++++.+||+||+|.+..|+..+|+++|||+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~aA~~lgiP~ 168 (441)
T 2yjn_A 89 DIIDYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKWRPDLVIWEPLTFAAPIAAAVTGTPH 168 (441)
T ss_dssp HHHHHHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHCCSEEEECTTCTHHHHHHHHHTCCE
T ss_pred ccccccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCEEEecCcchhHHHHHHHcCCCE
Confidence 00 000 10 000101111111 1 2233444556689999999998888899999999999
Q ss_pred EEEeccc
Q 044094 148 LVYHGTC 154 (279)
Q Consensus 148 v~f~t~~ 154 (279)
+.+....
T Consensus 169 v~~~~~~ 175 (441)
T 2yjn_A 169 ARLLWGP 175 (441)
T ss_dssp EEECSSC
T ss_pred EEEecCC
Confidence 9986554
No 14
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.22 E-value=4.8e-11 Score=108.06 Aligned_cols=126 Identities=13% Similarity=0.113 Sum_probs=83.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCC-C------CCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPST-A------ANLP 86 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-~------~~lp 86 (279)
+||++++.++.||++|++.|+++|+++||+|++++++...+.+.. . +++++.++.... . .++|
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~--------~--g~~~~~~~~~~~~~~~~~~~~~~~ 70 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTG--------V--GLPAVATTDLPIRHFITTDREGRP 70 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH--------T--TCCEEESCSSCHHHHHHBCTTSCB
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHh--------C--CCEEEEeCCcchHHHHhhhcccCc
Confidence 389999999999999999999999999999999998765443332 2 266776652100 0 0011
Q ss_pred CCCCCCCCCCCcchHHHH----H-HHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccc
Q 044094 87 PNCENLDAIPSRDLSYNF----S-KAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~----~-~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~ 154 (279)
... + +.......+ + .........+.+++++.+||+||+|.+..|+..+|+++|||++.+++..
T Consensus 71 ~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~ 138 (384)
T 2p6p_A 71 EAI---P--SDPVAQARFTGRWFARMAASSLPRMLDFSRAWRPDLIVGGTMSYVAPLLALHLGVPHARQTWDA 138 (384)
T ss_dssp CCC---C--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCSS
T ss_pred ccc---C--cchHHHHHHHHHHHHhhHHHHHHHHHHHHhccCCcEEEECcchhhHHHHHHhcCCCEEEeccCC
Confidence 100 0 100111111 1 1112234455566677899999999988888999999999999987543
No 15
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.20 E-value=1.1e-10 Score=106.29 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=85.9
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCC---
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNC--- 89 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~--- 89 (279)
.+||+++..++.||++|++.|+++|.++||+|+++++ ...+.+.. . .++++.++... .+..-.
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~--------~--G~~~~~~~~~~---~~~~~~~~~ 85 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAA--------A--GLEVVDVAPDY---SAVKVFEQV 85 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHT--------T--TCEEEESSTTC---CHHHHHHHH
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHh--------C--CCeeEecCCcc---CHHHHhhhc
Confidence 3699999999999999999999999999999999998 55444433 2 37787765210 000000
Q ss_pred ----CC------CCCCCCcchHHH-HHHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEecc
Q 044094 90 ----EN------LDAIPSRDLSYN-FSKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 90 ----~~------~~~~~~~~~~~~-~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
.. ............ +......+...+.+++++.+||+||+|....++..+|+++|||++..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~ 160 (398)
T 3oti_A 86 AKDNPRFAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDYRPDLVVYEQGATVGLLAADRAGVPAVQRNQS 160 (398)
T ss_dssp HHHCHHHHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCT
T ss_pred ccCCccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECchhhHHHHHHHHcCCCEEEEecc
Confidence 00 000000011122 22222345677788888899999999987777889999999999987654
No 16
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.13 E-value=1.9e-10 Score=104.20 Aligned_cols=130 Identities=12% Similarity=0.154 Sum_probs=81.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEe-cCCCC-C----CCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLL-NFPST-A----ANLPP 87 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~l-p~~~~-~----~~lp~ 87 (279)
+||+++..++.||++|++.|+++|.++||+|+++++....+.+.. .+ ++++.+ ..+.. . +..+.
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~--------~g--~~~~~~~~~~~~~~~~~~~~~~~ 71 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHG--------AG--LTTAGIRGNDRTGDTGGTTQLRF 71 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHH--------BT--CEEEEC--------------CCS
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHh--------CC--CceeeecCCccchhhhhhhcccc
Confidence 589999999999999999999999999999999987654444433 12 566655 21000 0 00010
Q ss_pred CCCCCCCCCCcchHHHHH-HHHHHh-------HHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEeccc
Q 044094 88 NCENLDAIPSRDLSYNFS-KAIMML-------HPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~-~~~~~l-------~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~ 154 (279)
.......... ......+ .....+ ...+.+++++.+||+||+|.+..++..+|+++|||++.+.+..
T Consensus 72 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~ 145 (391)
T 3tsa_A 72 PNPAFGQRDT-EAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWRPSVLLVDVCALIGRVLGGLLDLPVVLHRWGV 145 (391)
T ss_dssp CCGGGGCTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHTTCCEEEECCSC
T ss_pred cccccccccc-hhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcCCCEEEeCcchhHHHHHHHHhCCCEEEEecCC
Confidence 0000000000 1111111 111233 5566777888899999999876677888999999999885443
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.12 E-value=1.2e-10 Score=106.00 Aligned_cols=133 Identities=11% Similarity=0.153 Sum_probs=84.2
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCC--CC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLP--PN 88 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp--~~ 88 (279)
+..+||+++..++.||++|++.|+++|.++||+|++++++...+.+.. .+ +.++.++.......+. ..
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~--------~G--~~~~~~~~~~~~~~~~~~~~ 82 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTG--------AG--LPFAPTCPSLDMPEVLSWDR 82 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHH--------TT--CCEEEEESSCCHHHHHSBCT
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHh--------CC--CeeEecCCccchHhhhhhhc
Confidence 345699999999999999999999999999999999998665544443 23 6666665210000000 00
Q ss_pred CCCCCCCCC-c-chHH---HH-HHHHHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEecc
Q 044094 89 CENLDAIPS-R-DLSY---NF-SKAIMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 89 ~~~~~~~~~-~-~~~~---~~-~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
.......+. . .... .+ ......+...+.+++++.+||+||+|....++..+|+++|||++.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~ 153 (398)
T 4fzr_A 83 EGNRTTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERWKPDLVLTETYSLTGPLVAATLGIPWIEQSIR 153 (398)
T ss_dssp TSCBCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEETTCTHHHHHHHHHTCCEEEECCS
T ss_pred cCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECccccHHHHHHHhhCCCEEEeccC
Confidence 000000000 0 0111 11 1112234456677777889999999987778889999999999987655
No 18
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.11 E-value=1.8e-10 Score=105.54 Aligned_cols=124 Identities=14% Similarity=0.114 Sum_probs=79.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
+||+++.++..||++|++.|+++|.++||+|+|++++...+.+.. .+ +.++.++... ..+ .+.. ..
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~--------~g--~~~~~l~~~~--~~~-~~~~-~~ 66 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAE--------VG--VPMVPVGRAV--RAG-AREP-GE 66 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHH--------TT--CCEEECSSCS--SGG-GSCT-TC
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHH--------cC--CceeecCCCH--HHH-hccc-cC
Confidence 379999999999999999999999999999999998766555543 23 7777775211 000 0000 00
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCch---HHHHHHhCCCeEEEeccch
Q 044094 94 AIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWT---AEIARKYGIPRLVYHGTCC 155 (279)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~t~~a 155 (279)
.. ......+........+.+.+++ .+||+||+|....++ ..+|+++|||++..+.+..
T Consensus 67 ~~--~~~~~~~~~~~~~~~~~l~~~~--~~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~ 127 (404)
T 3h4t_A 67 LP--PGAAEVVTEVVAEWFDKVPAAI--EGCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPD 127 (404)
T ss_dssp CC--TTCGGGHHHHHHHHHHHHHHHH--TTCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGG
T ss_pred CH--HHHHHHHHHHHHHHHHHHHHHh--cCCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCc
Confidence 00 0111112222223333344433 369999999766554 7889999999998776654
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.02 E-value=1.2e-09 Score=99.39 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=83.8
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCC----------
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFP---------- 79 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~---------- 79 (279)
...++||+++..++.||++|++.|+++|.++||+|+++++....+.+.. . .++++.++..
T Consensus 17 ~~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~--------~--g~~~~~~~~~~~~~~~~~~~ 86 (412)
T 3otg_A 17 EGRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRK--------L--GFEPVATGMPVFDGFLAALR 86 (412)
T ss_dssp -CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHH--------T--TCEEEECCCCHHHHHHHHHH
T ss_pred ccceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHh--------c--CCceeecCcccccchhhhhh
Confidence 4556799999999999999999999999999999999998754333332 2 2777766520
Q ss_pred --CCCCCCCCCCCCCCCCCCcchHHHHHH-H-HHHhHHHHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEEecc
Q 044094 80 --STAANLPPNCENLDAIPSRDLSYNFSK-A-IMMLHPQADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 80 --~~~~~lp~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
....+.|.. ...... ......+. . ...+...+.+++++.+||+||+|....++..+|+++|||++.+...
T Consensus 87 ~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~ 160 (412)
T 3otg_A 87 IRFDTDSPEGL-TPEQLS---ELPQIVFGRVIPQRVFDELQPVIERLRPDLVVQEISNYGAGLAALKAGIPTICHGVG 160 (412)
T ss_dssp HHHSCSCCTTC-CHHHHT---TSHHHHHHTHHHHHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHTCCEEEECCS
T ss_pred hhhcccCCccC-ChhHhh---HHHHHHHhccchHHHHHHHHHHHHhcCCCEEEECchhhHHHHHHHHcCCCEEEeccc
Confidence 000001100 000000 01111111 1 1223456677778889999999977767788899999999987544
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.39 E-value=2.2e-06 Score=77.29 Aligned_cols=116 Identities=22% Similarity=0.293 Sum_probs=68.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh-hhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS-RFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENL 92 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~-~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~ 92 (279)
.+|++..-..-||++|.+.||++|.++||+|+|+++....+ ++. +. . ++.++.++.. +++.. ...
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v---~~----~--g~~~~~i~~~----~~~~~-~~~ 68 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLV---PK----A--GLPLHLIQVS----GLRGK-GLK 68 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHT---GG----G--TCCEEECC---------------
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchh---hh----c--CCcEEEEECC----CcCCC-CHH
Confidence 37777654444999999999999999999999998865422 221 11 1 2667766531 23211 000
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCch--HHHHHHhCCCeEEE
Q 044094 93 DAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWT--AEIARKYGIPRLVY 150 (279)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~--~~vA~~lgiP~v~f 150 (279)
..+ .....++.+. ....+++++.+||+||++...... ...|+.+|||.++.
T Consensus 69 ~~~---~~~~~~~~~~----~~~~~~l~~~~PDvVi~~g~~~s~p~~laA~~~~iP~vih 121 (365)
T 3s2u_A 69 SLV---KAPLELLKSL----FQALRVIRQLRPVCVLGLGGYVTGPGGLAARLNGVPLVIH 121 (365)
T ss_dssp -------CHHHHHHHH----HHHHHHHHHHCCSEEEECSSSTHHHHHHHHHHTTCCEEEE
T ss_pred HHH---HHHHHHHHHH----HHHHHHHHhcCCCEEEEcCCcchHHHHHHHHHcCCCEEEE
Confidence 000 0111222221 223456777899999999765533 45688999999975
No 21
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=97.80 E-value=0.00014 Score=64.39 Aligned_cols=119 Identities=15% Similarity=0.196 Sum_probs=72.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLD 93 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~ 93 (279)
++|+++....-||..+++.|++.|+++||+|++++....... ..+. ..+++++.++.. +++..
T Consensus 7 mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~--~~~~------~~g~~~~~~~~~----~~~~~----- 69 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEA--DLVP------KHGIEIDFIRIS----GLRGK----- 69 (364)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHH--HHGG------GGTCEEEECCCC----CCTTC-----
T ss_pred cEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchh--hhcc------ccCCceEEecCC----ccCcC-----
Confidence 689998876669999999999999999999999987653211 1111 013677666531 12110
Q ss_pred CCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCC--chHHHHHHhCCCeEEEec
Q 044094 94 AIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFP--WTAEIARKYGIPRLVYHG 152 (279)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~t 152 (279)
.....+....... .....+.+++++.+||+|+++.... ++..+|+.+|+|+++...
T Consensus 70 --~~~~~~~~~~~~~-~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~ 127 (364)
T 1f0k_A 70 --GIKALIAAPLRIF-NAWRQARAIMKAYKPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQ 127 (364)
T ss_dssp --CHHHHHTCHHHHH-HHHHHHHHHHHHHCCSEEEECSSTTHHHHHHHHHHTTCCEEEEEC
T ss_pred --ccHHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEeCCcCchHHHHHHHHcCCCEEEEec
Confidence 0000000011111 1223455667778999999986432 345677889999987643
No 22
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=94.96 E-value=0.34 Score=43.08 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=29.8
Q ss_pred CcEEEEEcC---C-C-CCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 13 QLHVFFVPF---M-S-PGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 13 ~~hvv~vp~---p-~-~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+++|+++.. | . -|--.-+.+|++.|+++||+|+++++..
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~ 45 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSH 45 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 568887762 2 2 3555568999999999999999998543
No 23
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=94.86 E-value=0.17 Score=44.51 Aligned_cols=111 Identities=11% Similarity=0.127 Sum_probs=66.5
Q ss_pred CCCcEEEEEcC--C--CCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCC
Q 044094 11 HEQLHVFFVPF--M--SPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLP 86 (279)
Q Consensus 11 ~~~~hvv~vp~--p--~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp 86 (279)
+++++|+++.. + .-|+-.-+.+|++.| +||+|++++........... . ...++.+..++.. .
T Consensus 2 ~~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~-----~- 67 (394)
T 3okp_A 2 SASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAY-D-----KTLDYEVIRWPRS-----V- 67 (394)
T ss_dssp --CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHH-H-----TTCSSEEEEESSS-----S-
T ss_pred CCCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhh-c-----cccceEEEEcccc-----c-
Confidence 45567887753 3 457888899999999 79999999877654321111 1 1123677766521 0
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCC--chHHHHHHhCCCeEEEecc
Q 044094 87 PNCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFP--WTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~f~t~ 153 (279)
..+. . . ....+.+++++.++|+|++..... +....++++|+|.+++..-
T Consensus 68 -------~~~~---~-~-------~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h 118 (394)
T 3okp_A 68 -------MLPT---P-T-------TAHAMAEIIREREIDNVWFGAAAPLALMAGTAKQAGASKVIASTH 118 (394)
T ss_dssp -------CCSC---H-H-------HHHHHHHHHHHTTCSEEEESSCTTGGGGHHHHHHTTCSEEEEECC
T ss_pred -------cccc---h-h-------hHHHHHHHHHhcCCCEEEECCcchHHHHHHHHHhcCCCcEEEEec
Confidence 0111 1 1 122345566777899998765443 4567789999996654433
No 24
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=94.83 E-value=0.089 Score=48.45 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCcEEEEEcC---C------------CCCChHHHHHHHHHHHhCCCeEEEEcCCCChhh---hhhccccCCCCCCCCeEE
Q 044094 12 EQLHVFFVPF---M------------SPGHQIPMIDMARIFASRGVKATILTTPLNISR---FESSINRDDYHHHNPIKL 73 (279)
Q Consensus 12 ~~~hvv~vp~---p------------~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~---~~~~~~~~~~~~~~~i~~ 73 (279)
++++|+++.. | .-|.-.-+.+|++.|+++||+|++++....... ......... ...++++
T Consensus 6 ~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~--~~~gv~v 83 (499)
T 2r60_A 6 RIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRRIKDENWPEFSGEIDYYQ--ETNKVRI 83 (499)
T ss_dssp -CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEECCCBTTBGGGCCSEEECT--TCSSEEE
T ss_pred ccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCCCCcccccchhhhHHhcc--CCCCeEE
Confidence 3478998863 2 246778899999999999999999986533211 100010000 0124778
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHh--cCCCEEEecCCCC-c-hHHHHHHhCCCeEE
Q 044094 74 LLLNFPSTAANLPPNCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQ--CQPDAIISDMNFP-W-TAEIARKYGIPRLV 149 (279)
Q Consensus 74 ~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~--~~~d~vI~D~~~~-~-~~~vA~~lgiP~v~ 149 (279)
+.++.. +... .........+. .....+.+++++ .++|+|.+-.... + +..+++.+|+|.++
T Consensus 84 ~~~~~~------~~~~-----~~~~~~~~~~~----~~~~~l~~~l~~~~~~~Divh~~~~~~~~~~~~~~~~~~~p~v~ 148 (499)
T 2r60_A 84 VRIPFG------GDKF-----LPKEELWPYLH----EYVNKIINFYREEGKFPQVVTTHYGDGGLAGVLLKNIKGLPFTF 148 (499)
T ss_dssp EEECCS------CSSC-----CCGGGCGGGHH----HHHHHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHCCCEEE
T ss_pred EEecCC------CcCC-----cCHHHHHHHHH----HHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHhcCCcEEE
Confidence 777632 1100 00001110111 111223445555 4899988765322 2 24467789999886
Q ss_pred Eec
Q 044094 150 YHG 152 (279)
Q Consensus 150 f~t 152 (279)
..-
T Consensus 149 ~~H 151 (499)
T 2r60_A 149 TGH 151 (499)
T ss_dssp ECS
T ss_pred Ecc
Confidence 543
No 25
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=94.41 E-value=0.16 Score=45.50 Aligned_cols=123 Identities=15% Similarity=0.128 Sum_probs=65.0
Q ss_pred CCCcEEEEEcC---C--------CCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCC
Q 044094 11 HEQLHVFFVPF---M--------SPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFP 79 (279)
Q Consensus 11 ~~~~hvv~vp~---p--------~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~ 79 (279)
.+.++|+++.. | .-|+-..+.+|++.|+++||+|++++.......-. ... ...+++++.++..
T Consensus 18 ~~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~-~~~-----~~~~v~v~~~~~~ 91 (438)
T 3c48_A 18 GSHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGE-IVR-----VAENLRVINIAAG 91 (438)
T ss_dssp -CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCS-EEE-----EETTEEEEEECCS
T ss_pred cchheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcc-ccc-----ccCCeEEEEecCC
Confidence 34468998874 3 25888999999999999999999998654321100 000 0123777766531
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHhc-CCCEEEecCCCC-c-hHHHHHHhCCCeEEEecc
Q 044094 80 STAANLPPNCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQC-QPDAIISDMNFP-W-TAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 80 ~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~-~~d~vI~D~~~~-~-~~~vA~~lgiP~v~f~t~ 153 (279)
. . .... .... ...+..+. ...++..++.. +||+|++..... + +..+++.+|+|++...-.
T Consensus 92 ~----~-~~~~-~~~~--~~~~~~~~------~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 154 (438)
T 3c48_A 92 P----Y-EGLS-KEEL--PTQLAAFT------GGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHT 154 (438)
T ss_dssp C----S-SSCC-GGGG--GGGHHHHH------HHHHHHHHHHTCCCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred C----c-cccc-hhHH--HHHHHHHH------HHHHHHHHhccCCCCEEEeCCccHHHHHHHHHHHcCCCEEEEecC
Confidence 1 0 0000 0000 01111111 11122213333 499998875322 2 245677899998876443
No 26
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=94.21 E-value=0.088 Score=46.63 Aligned_cols=116 Identities=11% Similarity=0.110 Sum_probs=61.2
Q ss_pred CCCcEEEEEcC---CC-CCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCC
Q 044094 11 HEQLHVFFVPF---MS-PGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLP 86 (279)
Q Consensus 11 ~~~~hvv~vp~---p~-~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp 86 (279)
.++++|+++.. +. -|+-.-+..|++.|+++||+|++++.......+...... .+ +++.++.
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~----~~---~~~~~~~-------- 82 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVS----GG---KAVPIPY-------- 82 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEE----CC---CCC------------
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCccccc----CC---cEEeccc--------
Confidence 34468887752 22 456678999999999999999999876442211110000 00 1111110
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEecc
Q 044094 87 PNCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~ 153 (279)
. ...... . +. ......+.+++++.++|+|++.....+ +..+++.+|+|.+...-.
T Consensus 83 -~-~~~~~~---~----~~---~~~~~~l~~~l~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 139 (406)
T 2gek_A 83 -N-GSVARL---R----FG---PATHRKVKKWIAEGDFDVLHIHEPNAPSLSMLALQAAEGPIVATFHT 139 (406)
T ss_dssp -----------------CC---HHHHHHHHHHHHHHCCSEEEEECCCSSSHHHHHHHHEESSEEEEECC
T ss_pred -c-CCcccc---c----cc---HHHHHHHHHHHHhcCCCEEEECCccchHHHHHHHHhcCCCEEEEEcC
Confidence 0 000000 0 00 011234556666679999988765543 355667779998876443
No 27
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=93.65 E-value=0.86 Score=40.15 Aligned_cols=121 Identities=15% Similarity=0.184 Sum_probs=62.9
Q ss_pred CCCCCCCCCcEEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCC
Q 044094 5 STKTHDHEQLHVFFVPFMSP-GHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAA 83 (279)
Q Consensus 5 ~~~~~~~~~~hvv~vp~p~~-GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~ 83 (279)
|+--+..-++.+....+|.. |.-.-+.+|++.|+++||+|++++...... ... ...++.+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~--------~~~~i~~~~~~~~---- 73 (394)
T 2jjm_A 7 SHHHHHHMKLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFR-LNK--------VYPNIYFHEVTVN---- 73 (394)
T ss_dssp --------CCEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-----C--------CCTTEEEECCCCC----
T ss_pred cccchhhheeeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCc-ccc--------cCCceEEEecccc----
Confidence 33334445567887777765 566778899999999999999998753211 110 1134666655421
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCC--chHHHHHHh---CCCeEEEec
Q 044094 84 NLPPNCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDMNFP--WTAEIARKY---GIPRLVYHG 152 (279)
Q Consensus 84 ~lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~--~~~~vA~~l---giP~v~f~t 152 (279)
..+. .. . ... . +. ....+.+++++.+||+|++..... +...+++++ ++|.+...-
T Consensus 74 ~~~~----~~---~-~~~-~-~~----~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h 133 (394)
T 2jjm_A 74 QYSV----FQ---Y-PPY-D-LA----LASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLH 133 (394)
T ss_dssp --------CC---S-CCH-H-HH----HHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECC
T ss_pred cccc----cc---c-ccc-c-HH----HHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 1110 00 0 001 1 11 122345566667999999875443 234455554 589876543
No 28
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=89.62 E-value=0.79 Score=40.11 Aligned_cols=112 Identities=18% Similarity=0.127 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCChhhhhhccccCCCCCCCCeEE-EEecCCCCCCCCCCCCCC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASR-GVKATILTTPLNISRFESSINRDDYHHHNPIKL-LLLNFPSTAANLPPNCEN 91 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~-~~lp~~~~~~~lp~~~~~ 91 (279)
++|+++.-- .+.......|++.|.++ ||+|.++.+............. .+ +.+ ..++. .. ..
T Consensus 6 mkIl~v~~~-~~~~~~~~~l~~~L~~~~g~~v~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~-------~~--~~ 69 (376)
T 1v4v_A 6 KRVVLAFGT-RPEATKMAPVYLALRGIPGLKPLVLLTGQHREQLRQALSL----FG--IQEDRNLDV-------MQ--ER 69 (376)
T ss_dssp EEEEEEECS-HHHHHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHHHHT----TT--CCCSEECCC-------CS--SC
T ss_pred eEEEEEEec-cHHHHHHHHHHHHHHhCCCCceEEEEcCCcHHHHHHHHHH----cC--CCccccccc-------CC--CC
Confidence 578877522 22334467789999988 8998877664432221111110 11 222 22221 00 00
Q ss_pred CCCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEe--cCCCCch-HHHHHHhCCCeEEEe
Q 044094 92 LDAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIIS--DMNFPWT-AEIARKYGIPRLVYH 151 (279)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~--D~~~~~~-~~vA~~lgiP~v~f~ 151 (279)
. .....+.. ....+.+++++.+||+|++ +....|. ..+|+++|||.+.+.
T Consensus 70 ----~--~~~~~~~~----~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~ 122 (376)
T 1v4v_A 70 ----Q--ALPDLAAR----ILPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVE 122 (376)
T ss_dssp ----C--CHHHHHHH----HHHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEET
T ss_pred ----c--cHHHHHHH----HHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEe
Confidence 0 11111111 2234556777789999988 3233354 567888999987653
No 29
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=86.63 E-value=1.3 Score=38.78 Aligned_cols=112 Identities=15% Similarity=0.124 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEcCCCChhhhhhccccCCCCCCCCeEE-EEecCCCCCCCCCCCCCCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGV-KATILTTPLNISRFESSINRDDYHHHNPIKL-LLLNFPSTAANLPPNCENL 92 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~-~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~-~~lp~~~~~~~lp~~~~~~ 92 (279)
+|+++.. ..++...+..|+++|.++|. ++.++.+............. .+ +.+ ..++. ...+
T Consensus 2 kIl~v~~-~~~~~~~~~~l~~~L~~~g~~~~~v~~~~~~~~~~~~~~~~----~~--~~~~~~~~~------~~~~---- 64 (384)
T 1vgv_A 2 KVLTVFG-TRPEAIKMAPLVHALAKDPFFEAKVCVTAQHREMLDQVLKL----FS--IVPDYDLNI------MQPG---- 64 (384)
T ss_dssp EEEEEEC-SHHHHHHHHHHHHHHHHSTTCEEEEEECCSSGGGGHHHHHH----HT--CCCSEECCC------CSTT----
T ss_pred eEEEEec-ccHHHHHHHHHHHHHHhCCCCceEEEEcCCCHHHHHHHHHH----cC--CCCCcceec------CCCC----
Confidence 5776643 24567778899999999984 77765443221111111110 01 222 22221 0000
Q ss_pred CCCCCcchHHHHHHHHHHhHHHHHHHHHhcCCCEEEecC--CCCch-HHHHHHhCCCeEEEec
Q 044094 93 DAIPSRDLSYNFSKAIMMLHPQADDLVRQCQPDAIISDM--NFPWT-AEIARKYGIPRLVYHG 152 (279)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~--~~~~~-~~vA~~lgiP~v~f~t 152 (279)
. ....... .....+.+++++.+||+|++-. ...|. ..+|+.+|+|.+....
T Consensus 65 ---~--~~~~~~~----~~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~ 118 (384)
T 1vgv_A 65 ---Q--GLTEITC----RILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEA 118 (384)
T ss_dssp ---S--CHHHHHH----HHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESC
T ss_pred ---c--cHHHHHH----HHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEec
Confidence 0 1111111 1224456677778999998732 33344 4567888999886543
No 30
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=86.44 E-value=4.9 Score=34.69 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=30.1
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhC-C-CeEEEEcCCCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASR-G-VKATILTTPLN 52 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~-G-~~VT~vtt~~~ 52 (279)
++++++|+++. ...++......+++.|+++ | ++|+++++...
T Consensus 5 m~~~mkIl~v~-~~~~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~ 48 (375)
T 3beo_A 5 MTERLKVMTIF-GTRPEAIKMAPLVLELQKHPEKIESIVTVTAQH 48 (375)
T ss_dssp CSSCEEEEEEE-CSHHHHHHHHHHHHHHTTCTTTEEEEEEECCSS
T ss_pred CCcCceEEEEe-cCcHHHHHHHHHHHHHHhCCCCCCeEEEEcCCC
Confidence 34457888875 3356777888999999887 5 88877766543
No 31
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=82.31 E-value=1.4 Score=37.80 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
-|.-.-+.+|++.|+++||+|++++...
T Consensus 30 gG~~~~~~~l~~~L~~~G~~v~v~~~~~ 57 (342)
T 2iuy_A 30 GGIQWVVANLMDGLLELGHEVFLLGAPG 57 (342)
T ss_dssp CHHHHHHHHHHHHHHHTTCEEEEESCTT
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4667788999999999999999998753
No 32
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=80.73 E-value=1.7 Score=40.68 Aligned_cols=45 Identities=18% Similarity=0.297 Sum_probs=29.2
Q ss_pred CCCCCCCCcEEEEEcC---CC--CCCh-HHHHHHHHHHHhCCCeEEEEcCC
Q 044094 6 TKTHDHEQLHVFFVPF---MS--PGHQ-IPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 6 ~~~~~~~~~hvv~vp~---p~--~GH~-~P~l~La~~La~~G~~VT~vtt~ 50 (279)
+.++...++|||++.+ |. .|=+ .-+-.|+|.|+++||+|+++++.
T Consensus 2 ~~~~~~~~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 2 AHHHHHHHMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp ------CCCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CcccCCCCcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 3455667789999963 32 2322 34668999999999999999853
No 33
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=79.48 E-value=2.9 Score=37.29 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhcCCCEEEe--cCCCCchHHHHHHhCCCeEEEe
Q 044094 111 LHPQADDLVRQCQPDAIIS--DMNFPWTAEIARKYGIPRLVYH 151 (279)
Q Consensus 111 l~~~l~~ll~~~~~d~vI~--D~~~~~~~~vA~~lgiP~v~f~ 151 (279)
+...+++++++.+||+||. |....|+...|.++|||.+.+.
T Consensus 82 ~~~~l~~~l~~~kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~e 124 (385)
T 4hwg_A 82 VIEKVDEVLEKEKPDAVLFYGDTNSCLSAIAAKRRKIPIFHME 124 (385)
T ss_dssp HHHHHHHHHHHHCCSEEEEESCSGGGGGHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHhcCCcEEEEECCchHHHHHHHHHHhCCCEEEEe
Confidence 4455677788889998776 4556677778899999976654
No 34
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=77.16 E-value=3.6 Score=36.29 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=32.3
Q ss_pred CCCcEEEEE-cCC-CCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 11 HEQLHVFFV-PFM-SPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 11 ~~~~hvv~v-p~p-~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+++++|+++ +.+ .-|+-.-+.+|++.|+++||+|++++....
T Consensus 38 ~~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 38 LKGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hhccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 345678755 444 348888999999999999999999876544
No 35
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=77.06 E-value=4 Score=34.90 Aligned_cols=86 Identities=17% Similarity=0.234 Sum_probs=51.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchH
Q 044094 22 MSPGHQIPMIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLS 101 (279)
Q Consensus 22 p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~ 101 (279)
=|.||+.=++.||++|. +|+|++.......+.. . ++....++ . + + .
T Consensus 13 IG~GHvmRcl~LA~~l~----~v~F~~~~~~~~~~~~--------~--g~~v~~l~---------~-----~-----d-~ 58 (282)
T 3hbm_A 13 IGFGHIKRDLVLAKQYS----DVSFACLPLEGSLIDE--------I--PYPVYELS---------S-----E-----S-I 58 (282)
T ss_dssp TBSHHHHHHHHHHTTCS----SEEEEECCCTTCCGGG--------C--CSCEEECS---------S-----S-----C-H
T ss_pred ccccHHHHHHHHHHHHH----hCEEEEecCcHhHHHH--------C--CCeEEEcC---------c-----c-----C-H
Confidence 46799999999999998 7999976532211111 1 13333222 1 0 1 1
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCCEEEecCCCCch---HHHHHHhCCCeEEEec
Q 044094 102 YNFSKAIMMLHPQADDLVRQCQPDAIISDMNFPWT---AEIARKYGIPRLVYHG 152 (279)
Q Consensus 102 ~~~~~~~~~l~~~l~~ll~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~f~t 152 (279)
.. +.+++++.++|+||.|....-. ..+.+..|++.+++-=
T Consensus 59 ~~-----------~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~iDD 101 (282)
T 3hbm_A 59 YE-----------LINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDD 101 (282)
T ss_dssp HH-----------HHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEEECS
T ss_pred HH-----------HHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEEEec
Confidence 11 2234445689999999877633 3444446888877643
No 36
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=76.07 E-value=2 Score=37.15 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=28.6
Q ss_pred EEEEEc---CCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 15 HVFFVP---FMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 15 hvv~vp---~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
+|+++. .|.-|.-.-+.+|++.|+++||+|++++..
T Consensus 2 kIl~i~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~ 40 (374)
T 2iw1_A 2 IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQS 40 (374)
T ss_dssp CEEEECSEECTTCHHHHHHHHHHHHHHHTTCCEEEEESE
T ss_pred eEEEEEeecCCCcchhhHHHHHHHHHHhCCCeEEEEecC
Confidence 466552 245577788999999999999999999864
No 37
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=75.50 E-value=1.9 Score=38.87 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=29.5
Q ss_pred CCCcEEEEEc-CCCC----CChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 11 HEQLHVFFVP-FMSP----GHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 11 ~~~~hvv~vp-~p~~----GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
..+++|+++. .... |=.+-+.+||++|+++||+|++++...
T Consensus 44 ~~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 44 IKGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp CCSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSC
T ss_pred CCCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 3456887554 3222 333568999999999999999998753
No 38
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=74.67 E-value=9.5 Score=31.98 Aligned_cols=99 Identities=18% Similarity=0.327 Sum_probs=53.5
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCChhhhhhccccCCCCCCCCeEEEEecCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 044094 30 MIDMARIFASRGVKATILTTPLNISRFESSINRDDYHHHNPIKLLLLNFPSTAANLPPNCENLDAIPSRDLSYNFSKAIM 109 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~vtt~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~ 109 (279)
+..|++.|.+.| +|+++.+..+++-....+. ....+++...... .. . ..+..| .-...-
T Consensus 17 i~~L~~~l~~~g-~V~VvAP~~~~Sg~g~siT-----~~~pl~~~~~~~~----~~---~-~v~GTP----aDCV~l--- 75 (251)
T 2wqk_A 17 INALREALKSLG-RVVVVAPDRNLSGVGHSLT-----FTEPLKMRKIDTD----FY---T-VIDGTP----ADCVHL--- 75 (251)
T ss_dssp HHHHHHHHTTTS-EEEEEEESSCCTTSCCSCC-----CSSCEEEEEEETT----EE---E-ETTCCH----HHHHHH---
T ss_pred HHHHHHHHHhCC-CEEEEeeCCCCcccccCcC-----CCCCceeEEeecc----ce---e-ecCCCh----HHHHhh---
Confidence 567888888888 6998887766543332221 1123555544310 00 0 001111 111111
Q ss_pred HhHHHHHHHHHhcCCCEEEe----------cCCCCc---hHHHHHHhCCCeEEEecc
Q 044094 110 MLHPQADDLVRQCQPDAIIS----------DMNFPW---TAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 110 ~l~~~l~~ll~~~~~d~vI~----------D~~~~~---~~~vA~~lgiP~v~f~t~ 153 (279)
.+..++...+||+||+ |.+.+. ++.-|.-+|||.+.|+-.
T Consensus 76 ----al~~~l~~~~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~ 128 (251)
T 2wqk_A 76 ----GYRVILEEKKPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp ----HHHTTTTTCCCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred ----hhhhhcCCCCCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEcc
Confidence 1233455568999999 444433 345577899999998753
No 39
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=71.08 E-value=3 Score=37.25 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=25.9
Q ss_pred CCCcEEEEEc---CCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 11 HEQLHVFFVP---FMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 11 ~~~~hvv~vp---~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
.++++|+++. || .|.-.-...+++.|+++| +|++++..
T Consensus 12 ~~~MkIl~is~~~~p-~~~~~~~~~l~~~l~~~G-~V~vi~~~ 52 (406)
T 2hy7_A 12 IRRPCYLVLSSHDFR-TPRRANIHFITDQLALRG-TTRFFSLR 52 (406)
T ss_dssp -CCSCEEEEESSCTT-SSSCCHHHHHHHHHHHHS-CEEEEECS
T ss_pred CCCceEEEEecccCC-ChhhhhHhHHHHHHHhCC-ceEEEEec
Confidence 3456788776 55 333333456888999999 99999543
No 40
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=69.68 E-value=9.2 Score=30.77 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=39.8
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
++.+||+.+.++-.|-....-++..|..+|++|.++......+.+..
T Consensus 87 ~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~ 133 (210)
T 1y80_A 87 SVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVE 133 (210)
T ss_dssp CCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHH
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 45689999999999999999999999999999999877655555443
No 41
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=68.75 E-value=8.7 Score=28.81 Aligned_cols=45 Identities=13% Similarity=0.102 Sum_probs=37.3
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
.+++|++...++-+|-.-..=++..|..+|++|.++......+.+
T Consensus 2 ~~~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~ 46 (137)
T 1ccw_A 2 EKKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELF 46 (137)
T ss_dssp CCCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHH
T ss_pred CCCEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 356899999999999999999999999999999988654444444
No 42
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=68.73 E-value=15 Score=36.27 Aligned_cols=126 Identities=16% Similarity=0.209 Sum_probs=62.3
Q ss_pred CcEEEEEcCCCC-------------CChHHHH--------HHHHHHHhCCCeEE----EEcCCCChhhhhh---ccccCC
Q 044094 13 QLHVFFVPFMSP-------------GHQIPMI--------DMARIFASRGVKAT----ILTTPLNISRFES---SINRDD 64 (279)
Q Consensus 13 ~~hvv~vp~p~~-------------GH~~P~l--------~La~~La~~G~~VT----~vtt~~~~~~~~~---~~~~~~ 64 (279)
..+|+++..-+. |...=.+ +||++|+++||+|| ++|-......-.. ......
T Consensus 278 ~~~i~~is~hg~~~~~~~lG~~dtGGq~vyV~e~~~al~~ela~~L~~~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~ 357 (816)
T 3s28_A 278 VFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALEIEMLQRIKQQGLNIKPRILILTRLLPDAVGTTCGERLERVY 357 (816)
T ss_dssp CCEEEEECCSSCCCSSSCTTSTTCSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECCTTCTTSSTTSSEEECT
T ss_pred eeEEEEEcCCcccCccccCCCCCCCCceeeHHHHHHHHHHHHHHHHHHCCCccceeeEEEeCCCCCCCCCccCCcceeec
Confidence 357888877664 3344455 58888889999987 7764322110000 000000
Q ss_pred CCCCCCeEEEEecCCCCCCC-CCCCCCCCCCCCCcchHHHHHHHHHHhHHHHHHHHHh--cCCCEEEecCCC-Cc-hHHH
Q 044094 65 YHHHNPIKLLLLNFPSTAAN-LPPNCENLDAIPSRDLSYNFSKAIMMLHPQADDLVRQ--CQPDAIISDMNF-PW-TAEI 139 (279)
Q Consensus 65 ~~~~~~i~~~~lp~~~~~~~-lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~--~~~d~vI~D~~~-~~-~~~v 139 (279)
...+++++.+|+... ++ +..... ...+ ...+..|.. ..+..++.. .+||+|.+-... .+ +..+
T Consensus 358 --~~~gv~I~RvP~~~~-~g~l~~~l~-k~~L--~~~L~~F~~------~~l~~il~~~~~~PDVIHsH~~~sglva~ll 425 (816)
T 3s28_A 358 --DSEYCDILRVPFRTE-KGIVRKWIS-RFEV--WPYLETYTE------DAAVELSKELNGKPDLIIGNYSDGNLVASLL 425 (816)
T ss_dssp --TCSSEEEEEECEEET-TEEECSCCC-TTTC--GGGHHHHHH------HHHHHHHHHCSSCCSEEEEEHHHHHHHHHHH
T ss_pred --CcCCeEEEEecCCCc-ccccccccc-HHHH--HHHHHHHHH------HHHHHHHHhcCCCCeEEEeCCchHHHHHHHH
Confidence 113578887774211 01 011110 0111 122222221 223333433 479999875322 22 3567
Q ss_pred HHHhCCCeEEE
Q 044094 140 ARKYGIPRLVY 150 (279)
Q Consensus 140 A~~lgiP~v~f 150 (279)
|+++|+|.|..
T Consensus 426 ar~~gvP~V~T 436 (816)
T 3s28_A 426 AHKLGVTQCTI 436 (816)
T ss_dssp HHHHTCCEEEE
T ss_pred HHHcCCCEEEE
Confidence 89999998765
No 43
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=67.33 E-value=5.9 Score=29.86 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
.+.||+++ |.|++- ..+++.|.++|++|+++...
T Consensus 2 ~~~~vlI~---G~G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVC---GHSILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEE---CCSHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEE---CCCHHH--HHHHHHHHHCCCCEEEEECC
Confidence 34588888 457766 78899999999999999753
No 44
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=64.07 E-value=9.4 Score=29.54 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=38.9
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
.++++|++...++-+|-.-..-++..|..+|++|.++......+.+.
T Consensus 16 ~~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv 62 (161)
T 2yxb_A 16 RRRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVA 62 (161)
T ss_dssp CCSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHH
T ss_pred CCCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHH
Confidence 35679999999999999999999999999999999986554444443
No 45
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=63.69 E-value=34 Score=29.12 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=33.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCCChhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASR--GVKATILTTPLNISR 55 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~vtt~~~~~~ 55 (279)
+|+++-.-+.|-+.=...+.+.|.++ |.+|++++.+.+.+.
T Consensus 2 kILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l 44 (348)
T 1psw_A 2 KILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL 44 (348)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHH
T ss_pred eEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHH
Confidence 78888888778888888888899875 999999998765443
No 46
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=62.78 E-value=7.4 Score=34.61 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhcCCCEEEe--cCCCCch-HHHHHHhCCCeEEEe
Q 044094 111 LHPQADDLVRQCQPDAIIS--DMNFPWT-AEIARKYGIPRLVYH 151 (279)
Q Consensus 111 l~~~l~~ll~~~~~d~vI~--D~~~~~~-~~vA~~lgiP~v~f~ 151 (279)
....+++++++.+||+|++ |....|+ ...|+++|||.+.+.
T Consensus 99 ~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ 142 (396)
T 3dzc_A 99 ILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVE 142 (396)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEET
T ss_pred HHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 3445677778889998876 3334354 567899999987653
No 47
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=61.78 E-value=18 Score=26.88 Aligned_cols=37 Identities=16% Similarity=0.401 Sum_probs=26.2
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh-------CCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY-------GIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~t~~ 154 (279)
++++.+||+||.|..++. +.++++++ ++|.+.+...+
T Consensus 52 ~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 52 MLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCC
Confidence 344568999999999984 56776654 47877665543
No 48
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=61.48 E-value=7 Score=35.26 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=27.4
Q ss_pred EEEEEcC---C---CCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 15 HVFFVPF---M---SPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 15 hvv~vp~---p---~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+|+++.. | .-|=-.-+.+|++.|+++||+|++++...
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~ 44 (485)
T 1rzu_A 2 NVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLIPGY 44 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEECC
T ss_pred eEEEEeeeeccccccccHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 6776653 2 22444668899999999999999998653
No 49
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=60.69 E-value=14 Score=30.80 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=38.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
.++.+||+...++-+|-....=++..|..+|++|.++......+.+
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l 166 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEV 166 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 4567899999999999999999999999999999988654443443
No 50
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=60.61 E-value=18 Score=29.40 Aligned_cols=47 Identities=11% Similarity=-0.025 Sum_probs=39.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
.++.+||+...++-.|-+...=++..|..+|++|+.+...-..+.+.
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv 136 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVV 136 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHH
Confidence 44579999999999999999999999999999999997765555553
No 51
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=60.30 E-value=15 Score=30.35 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
..+..|++.--||.|=..-++++|.+|+++|++|.++....
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 45678999999999999999999999999999998887654
No 52
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=58.96 E-value=8.5 Score=34.68 Aligned_cols=37 Identities=19% Similarity=0.168 Sum_probs=27.0
Q ss_pred EEEEEcC---C--CC-CChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 15 HVFFVPF---M--SP-GHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 15 hvv~vp~---p--~~-GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+|+++.. | .. |=-.-+.+|++.|+++||+|++++...
T Consensus 2 kIl~v~~~~~P~~~~GG~~~~~~~la~~L~~~G~~V~vi~~~~ 44 (485)
T 2qzs_A 2 QVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF 44 (485)
T ss_dssp EEEEECSCBTTTBCSSHHHHHHHHHHHHHHHTTCEEEEEEECC
T ss_pred eEEEEeeeccccccCCcHHHHHHHHHHHHHHcCCEEEEEecCc
Confidence 6776643 2 22 334557899999999999999998653
No 53
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=56.35 E-value=18 Score=29.44 Aligned_cols=45 Identities=7% Similarity=0.005 Sum_probs=35.8
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
.++.||++--..+.|-+- ..+|.++|.++|++|.++.|+.-...+
T Consensus 2 ~~~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~A~~fi 46 (209)
T 3zqu_A 2 SGPERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKAAQLVM 46 (209)
T ss_dssp CSCSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHHHHHHH
T ss_pred CCCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHH
Confidence 345688888788888777 899999999999999999887544433
No 54
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=56.17 E-value=13 Score=27.34 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=22.6
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHH---HhCCCeEE
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIAR---KYGIPRLV 149 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~---~lgiP~v~ 149 (279)
++++.+||+||.|..++. +.++++ +.++|.+.
T Consensus 48 ~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~ 84 (123)
T 2lpm_A 48 IARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIF 84 (123)
T ss_dssp HHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCC
T ss_pred HHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEE
Confidence 455679999999999873 355554 45788553
No 55
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=55.76 E-value=27 Score=24.45 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=25.0
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-------CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-------GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~t~~ 154 (279)
+++.+||+||.|..++. +.++.+++ ++|.+++....
T Consensus 42 l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 42 LSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 45578999999998863 46666554 57877765543
No 56
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=53.69 E-value=13 Score=33.18 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCCEEEe--cCCCCch-HHHHHHhCCCeEEEe
Q 044094 111 LHPQADDLVRQCQPDAIIS--DMNFPWT-AEIARKYGIPRLVYH 151 (279)
Q Consensus 111 l~~~l~~ll~~~~~d~vI~--D~~~~~~-~~vA~~lgiP~v~f~ 151 (279)
....+++++++.+||+|++ |....|+ ...|+++|||.+.+.
T Consensus 102 ~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~ 145 (403)
T 3ot5_A 102 VMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVE 145 (403)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEE
Confidence 3445677778889998876 3333453 677899999987654
No 57
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=47.68 E-value=1.2e+02 Score=26.01 Aligned_cols=47 Identities=9% Similarity=0.048 Sum_probs=39.0
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCCChhhh
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASR--GVKATILTTPLNISRF 56 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~--G~~VT~vtt~~~~~~~ 56 (279)
+-+..+|+++-.-+.|-+.=++.+.+.|.++ +.+|++++.+.+.+-+
T Consensus 5 ~l~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~ 53 (349)
T 3tov_A 5 ELDYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVM 53 (349)
T ss_dssp CCTTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGT
T ss_pred CCCCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHH
Confidence 4455699999999999999999999999876 9999999987665433
No 58
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=46.98 E-value=47 Score=23.65 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=24.0
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-------CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-------GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.+++ ++|.+++....
T Consensus 44 ~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 44 IYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 44578999999998864 45555433 57777665543
No 59
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=44.83 E-value=13 Score=27.79 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
.+++++ ..+.| +.|++.+++.|.++|.+|+++ ...+.
T Consensus 19 ~~~llI-aGG~G-iaPl~sm~~~l~~~~~~v~l~-g~R~~ 55 (142)
T 3lyu_A 19 GKILAI-GAYTG-IVEVYPIAKAWQEIGNDVTTL-HVTFE 55 (142)
T ss_dssp SEEEEE-EETTH-HHHHHHHHHHHHHTTCEEEEE-EEEEG
T ss_pred CeEEEE-ECcCc-HHHHHHHHHHHHhcCCcEEEE-EeCCH
Confidence 466665 33444 899999999999999999998 55443
No 60
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=44.24 E-value=27 Score=25.04 Aligned_cols=31 Identities=10% Similarity=0.250 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
.+|+++ |.|.+-- .+++.|.++|++|+++..
T Consensus 5 m~i~Ii---G~G~iG~--~~a~~L~~~g~~v~~~d~ 35 (140)
T 1lss_A 5 MYIIIA---GIGRVGY--TLAKSLSEKGHDIVLIDI 35 (140)
T ss_dssp CEEEEE---CCSHHHH--HHHHHHHHTTCEEEEEES
T ss_pred CEEEEE---CCCHHHH--HHHHHHHhCCCeEEEEEC
Confidence 578887 4477754 578999999999999864
No 61
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=44.08 E-value=41 Score=24.26 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=23.8
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh---------CCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY---------GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l---------giP~v~f~t~ 153 (279)
+++.+||+||.|..++. +.++.+++ .+|.+++...
T Consensus 54 ~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~ 99 (143)
T 3m6m_D 54 MAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSAD 99 (143)
T ss_dssp HHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESC
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCC
Confidence 44578999999998764 45665544 2677766554
No 62
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=43.86 E-value=28 Score=28.18 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=32.9
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
++.||++.-..+.|-+- ..+|.++|.++| +|.++.|+.-.+
T Consensus 18 ~~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~A~~ 58 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKSSLH 58 (209)
T ss_dssp -CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTGGGG
T ss_pred CCCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcchHHH
Confidence 34588888788887766 899999999999 999998875443
No 63
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=41.95 E-value=39 Score=26.86 Aligned_cols=44 Identities=18% Similarity=0.062 Sum_probs=22.5
Q ss_pred CCCCCCCC-CCCcEEEEEcCCCCCChHH----HHHHHHHHHhCCCeEEEE
Q 044094 3 PSSTKTHD-HEQLHVFFVPFMSPGHQIP----MIDMARIFASRGVKATIL 47 (279)
Q Consensus 3 ~~~~~~~~-~~~~hvv~vp~p~~GH~~P----~l~La~~La~~G~~VT~v 47 (279)
|+|+.... ..+..|.++-... |.-.+ ..+|++.|+++|+.|.+=
T Consensus 2 ~~~~~~~~~~~~~~I~Vfg~s~-~~~~~~~~~A~~lg~~la~~g~~lv~G 50 (189)
T 3sbx_A 2 PGSTAKSDEPGRWTVAVYCAAA-PTHPELLELAGAVGAAIAARGWTLVWG 50 (189)
T ss_dssp -----------CCEEEEECCSS-CCCHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCccCcCCCCCCeEEEEEEeCC-CCChHHHHHHHHHHHHHHHCCCEEEEC
Confidence 66666663 4446788887665 55444 456677778899865443
No 64
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=40.07 E-value=63 Score=22.69 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHhcCCCEEEecCCCC---chHHHHHH----hCCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFP---WTAEIARK----YGIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~---~~~~vA~~----lgiP~v~f~t~~ 154 (279)
+.+.+||+||.|..+. .+.++.++ .++|++++....
T Consensus 50 ~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~ 92 (140)
T 3cg0_A 50 APDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQ 92 (140)
T ss_dssp HHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCC
T ss_pred HHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 4446799999998764 34444443 378888776544
No 65
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=39.98 E-value=58 Score=22.46 Aligned_cols=37 Identities=32% Similarity=0.609 Sum_probs=24.2
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHH----HhCCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIAR----KYGIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~----~lgiP~v~f~t~~ 154 (279)
.+++.+||+||.|..++. +.++.+ ..++|.+++....
T Consensus 41 ~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 41 MVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp HHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred HHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 344578999999998774 344443 3467877665443
No 66
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=39.80 E-value=36 Score=26.73 Aligned_cols=40 Identities=8% Similarity=-0.044 Sum_probs=30.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
.||++.-..+.|=+ =..+|.++|.++|++|.++.|+.-.+
T Consensus 6 k~IllgvTGs~aa~-k~~~ll~~L~~~g~~V~vv~T~~A~~ 45 (175)
T 3qjg_A 6 ENVLICLCGSVNSI-NISHYIIELKSKFDEVNVIASTNGRK 45 (175)
T ss_dssp CEEEEEECSSGGGG-GHHHHHHHHTTTCSEEEEEECTGGGG
T ss_pred CEEEEEEeCHHHHH-HHHHHHHHHHHCCCEEEEEECcCHHH
Confidence 47777666665555 48999999999999999998875543
No 67
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=38.78 E-value=33 Score=31.27 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=17.5
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEE
Q 044094 115 ADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLV 149 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 149 (279)
+++++++.+||+||... +...+|+++|||.+.
T Consensus 367 le~~i~~~~pDllig~~---~~~~~a~k~gip~~~ 398 (458)
T 3pdi_B 367 LEHAARAGQAQLVIGNS---HALASARRLGVPLLR 398 (458)
T ss_dssp HHHHHHHHTCSEEEECT---THHHHHHHTTCCEEE
T ss_pred HHHHHHhcCCCEEEECh---hHHHHHHHcCCCEEE
Confidence 33444445566666553 345566666666553
No 68
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=36.58 E-value=64 Score=27.25 Aligned_cols=47 Identities=13% Similarity=0.032 Sum_probs=34.9
Q ss_pred HHHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEeccchHHHHHHH
Q 044094 116 DDLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGTCCFSLSLSV 162 (279)
Q Consensus 116 ~~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~~a~~~~~~~ 162 (279)
.+.+++.++.||+++..... +..+|++.|++.+.+-+.+...+.+|.
T Consensus 230 ~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~ld~l~~~Y~~~m~ 278 (291)
T 1pq4_A 230 IDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVELLDPLAADWSSNLK 278 (291)
T ss_dssp HHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEEECTTCSSHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEEcCchhhHHHHHH
Confidence 34455678999999987764 578899999999988776654444443
No 69
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=35.72 E-value=22 Score=27.12 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=29.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
.+++++ ..+.| +.|++.+++.|.++|.+|+++ ...+.+
T Consensus 24 ~~~llI-aGG~G-ItPl~sm~~~l~~~~~~v~l~-g~r~~~ 61 (158)
T 3lrx_A 24 GKILAI-GAYTG-IVEVYPIAKAWQEIGNDVTTL-HVTFEP 61 (158)
T ss_dssp SEEEEE-EETTH-HHHHHHHHHHHHHHTCEEEEE-EECBGG
T ss_pred CeEEEE-EccCc-HHHHHHHHHHHHhcCCcEEEE-EeCCHH
Confidence 466665 44556 999999999999989999999 655543
No 70
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=35.70 E-value=22 Score=27.92 Aligned_cols=18 Identities=11% Similarity=0.298 Sum_probs=16.1
Q ss_pred HHHHHHHHHhCCCeEEEE
Q 044094 30 MIDMARIFASRGVKATIL 47 (279)
Q Consensus 30 ~l~La~~La~~G~~VT~v 47 (279)
=|-+|..|+++|++|+++
T Consensus 14 GL~aA~~La~~G~~V~v~ 31 (336)
T 3kkj_A 14 GLSAAQALTAAGHQVHLF 31 (336)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCCCCEEEE
Confidence 367899999999999998
No 71
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=35.44 E-value=90 Score=22.01 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-------CCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-------GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~t~ 153 (279)
+.+.+||+||.|..++. +.++.+++ ++|.+++...
T Consensus 43 l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 43 LNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 44567999999998763 44554433 4676666543
No 72
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=35.25 E-value=78 Score=23.64 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=27.5
Q ss_pred CCCCCCcEEE-EEcCCCCCChHH--HHHHHHHHHhCCCeE-EEEcC
Q 044094 8 THDHEQLHVF-FVPFMSPGHQIP--MIDMARIFASRGVKA-TILTT 49 (279)
Q Consensus 8 ~~~~~~~hvv-~vp~p~~GH~~P--~l~La~~La~~G~~V-T~vtt 49 (279)
-+.....+++ ++.-|-.|+-.. .+++|+.+++.|++| +++-.
T Consensus 7 ~~~~~~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~ 52 (140)
T 2d1p_A 7 HHHHGSMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFY 52 (140)
T ss_dssp ----CCCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cccCCceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEe
Confidence 3344445555 666666777665 578899999999999 77644
No 73
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=35.10 E-value=56 Score=30.81 Aligned_cols=47 Identities=6% Similarity=-0.005 Sum_probs=40.1
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhhh
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFES 58 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~~ 58 (279)
.+.+||+...++-+|-+...-++..|..+|++|..+......+.+..
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~ 143 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILR 143 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHH
Confidence 46789999999999999999999999999999999977655555543
No 74
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=34.81 E-value=18 Score=33.29 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=27.0
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
..+++|||++--- .| -+.+|++|.++|++||++...
T Consensus 39 ~~~KprVVIIGgG-~A----Gl~~A~~L~~~~~~VtLId~~ 74 (502)
T 4g6h_A 39 HSDKPNVLILGSG-WG----AISFLKHIDTKKYNVSIISPR 74 (502)
T ss_dssp SCSSCEEEEECSS-HH----HHHHHHHSCTTTCEEEEEESS
T ss_pred CCCCCCEEEECCc-HH----HHHHHHHhhhCCCcEEEECCC
Confidence 4457899998533 22 367899999999999999654
No 75
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=34.04 E-value=1e+02 Score=21.36 Aligned_cols=33 Identities=21% Similarity=0.416 Sum_probs=21.9
Q ss_pred cCCCEEEecCCCCc--hHHHHHHh-------CCCeEEEeccc
Q 044094 122 CQPDAIISDMNFPW--TAEIARKY-------GIPRLVYHGTC 154 (279)
Q Consensus 122 ~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~t~~ 154 (279)
.++|+||.|..++. +.++.+++ ++|.+++....
T Consensus 50 ~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 50 ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCC
Confidence 47999999998764 45555433 46777665443
No 76
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=33.62 E-value=1e+02 Score=20.69 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=23.5
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHH----hCCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARK----YGIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~----lgiP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.++ -++|.+++....
T Consensus 41 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 41 FEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp HHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred HHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 34457999999987753 3444433 367877776554
No 77
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=33.45 E-value=85 Score=22.76 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=22.8
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHH-------hCCCeEEEecc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARK-------YGIPRLVYHGT 153 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~-------lgiP~v~f~t~ 153 (279)
.+++.+||+||.|..++. +.++.++ -++|.+++...
T Consensus 46 ~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 46 FLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECC
Confidence 345578999999987763 3444433 25677766543
No 78
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=33.38 E-value=24 Score=29.38 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
+|++ ..+.|.+- -+|+++|.++||+|+.++-
T Consensus 2 kILV--TGatGfIG--~~L~~~L~~~G~~V~~l~R 32 (298)
T 4b4o_A 2 RVLV--GGGTGFIG--TALTQLLNARGHEVTLVSR 32 (298)
T ss_dssp EEEE--ETTTSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred EEEE--ECCCCHHH--HHHHHHHHHCCCEEEEEEC
Confidence 4554 35566654 4689999999999999864
No 79
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=32.60 E-value=42 Score=24.39 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=24.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
.||+++-+ |.+ -..+++.|.++|++|+++..
T Consensus 7 ~~v~I~G~---G~i--G~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 7 YEYIVIGS---EAA--GVGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp CSEEEECC---SHH--HHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEECC---CHH--HHHHHHHHHHCCCeEEEEEC
Confidence 47888754 664 46789999999999998854
No 80
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=31.82 E-value=1.1e+02 Score=20.95 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=21.8
Q ss_pred HHhc-CCCEEEecCCCCc---hHHHHHHh-----CCCeEEEecc
Q 044094 119 VRQC-QPDAIISDMNFPW---TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~-~~d~vI~D~~~~~---~~~vA~~l-----giP~v~f~t~ 153 (279)
+.+. +||+||.|..+.. +.++.+++ ++|++++...
T Consensus 45 l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 88 (132)
T 2rdm_A 45 LKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGH 88 (132)
T ss_dssp HHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESS
T ss_pred HHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4444 7999999987653 34444332 4677766543
No 81
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=31.63 E-value=29 Score=28.88 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 3 PSSTKTHDHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 3 ~~~~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
|.+..+......+|+++-.-.-| +..|..|+++|++|+++--
T Consensus 5 p~~~~~~~~~~~~vvIIG~G~aG-----l~aA~~l~~~g~~v~lie~ 46 (323)
T 3f8d_A 5 PRTTSVKPGEKFDVIIVGLGPAA-----YGAALYSARYMLKTLVIGE 46 (323)
T ss_dssp -----CCTTCEEEEEEECCSHHH-----HHHHHHHHHTTCCEEEEES
T ss_pred CCcccccCCCccCEEEECccHHH-----HHHHHHHHHCCCcEEEEec
Confidence 44444443334688888443333 6788889999999999964
No 82
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=31.25 E-value=91 Score=21.45 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=23.1
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.+++ ++|.+++....
T Consensus 43 ~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (126)
T 1dbw_A 43 APDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHG 85 (126)
T ss_dssp GGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred HhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 44567999999987763 44554433 56777665443
No 83
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=31.19 E-value=85 Score=22.60 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=23.3
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
.+.+.+||+||.|..++. +.++.+++ ++|++++....
T Consensus 46 ~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (154)
T 2rjn_A 46 ALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYA 89 (154)
T ss_dssp HHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGG
T ss_pred HHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCC
Confidence 344567999999987753 34444333 57777665543
No 84
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=31.12 E-value=1.1e+02 Score=20.75 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=23.4
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh----CCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY----GIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l----giP~v~f~t~~ 154 (279)
++.+.+||+||.|.-++. +.++.+++ ++|.+++....
T Consensus 41 ~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 41 IMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 344567999999987763 45555544 46666554433
No 85
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=30.86 E-value=1.1e+02 Score=20.70 Aligned_cols=35 Identities=14% Similarity=0.306 Sum_probs=22.4
Q ss_pred HhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 120 RQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 120 ~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
.+.+||+||.|..++. +.++.+++ ++|.+++....
T Consensus 44 ~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 44 KELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred HhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 3457999999988763 34554433 57776665443
No 86
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=30.10 E-value=1e+02 Score=21.50 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=22.2
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
+++.+||+||.|..++. +.++.+++ ++|.+++...
T Consensus 45 ~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 45 IEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp HHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred HhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecC
Confidence 34467999999988763 44444433 4666666544
No 87
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=29.92 E-value=1.3e+02 Score=20.17 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=21.5
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEec
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHG 152 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t 152 (279)
+.+.+||+||.|..++. +.++.+++ ++|.+++..
T Consensus 41 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 41 FFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp HHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEES
T ss_pred HhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEEC
Confidence 34567999999997763 44444433 466665544
No 88
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=29.80 E-value=1.3e+02 Score=20.64 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=20.8
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHH---Hh----CCCeEEEec
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIAR---KY----GIPRLVYHG 152 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~---~l----giP~v~f~t 152 (279)
+.+.+||+||.|..++. +.++.+ +. ++|.+++..
T Consensus 43 l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 43 ALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp HHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 44568999999987653 333332 21 566665543
No 89
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=29.75 E-value=1.2e+02 Score=20.54 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=22.9
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHH----hCCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARK----YGIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~----lgiP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.++ -++|.+++....
T Consensus 43 ~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 43 LSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred HhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 34568999999987763 3444443 356766665443
No 90
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=29.57 E-value=63 Score=25.88 Aligned_cols=39 Identities=21% Similarity=0.045 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCCCChH-HHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 13 QLHVFFVPFMSPGHQI-PMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~-P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
+.||++--..+ +... =.++|.++|.++|++|.++.|+.-
T Consensus 7 ~k~I~lgiTGs-~aa~~k~~~ll~~L~~~g~eV~vv~T~~A 46 (201)
T 3lqk_A 7 GKHVGFGLTGS-HCTYHEVLPQMERLVELGAKVTPFVTHTV 46 (201)
T ss_dssp TCEEEEECCSC-GGGGGGTHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCEEEEEEECh-HHHHHHHHHHHHHHhhCCCEEEEEEChhH
Confidence 35777665555 5555 789999999999999999987643
No 91
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=29.42 E-value=69 Score=25.57 Aligned_cols=41 Identities=5% Similarity=0.105 Sum_probs=31.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCCChhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASR-GVKATILTTPLNISRF 56 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~-G~~VT~vtt~~~~~~~ 56 (279)
+|++--..+.|-+- ..+|.++|.++ |++|.++.|+.-.+.+
T Consensus 2 ~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~A~~fi 43 (197)
T 1sbz_A 2 KLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKWAKTTI 43 (197)
T ss_dssp EEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHHHHHHH
T ss_pred EEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECchHHHHh
Confidence 56666566666655 89999999998 9999999887544433
No 92
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=29.06 E-value=84 Score=21.99 Aligned_cols=36 Identities=19% Similarity=0.405 Sum_probs=22.2
Q ss_pred HHhcCCCEEEecCCCC-------chHHHHHHh-----CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFP-------WTAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~-------~~~~vA~~l-----giP~v~f~t~~ 154 (279)
+++.++|+||.|.-+. .+.++.+++ ++|++++....
T Consensus 43 l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 90 (140)
T 2qr3_A 43 LREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYA 90 (140)
T ss_dssp HHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGG
T ss_pred HHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCC
Confidence 4456799999998764 234443332 57777665443
No 93
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=28.94 E-value=1.1e+02 Score=20.81 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=22.4
Q ss_pred HhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 120 RQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 120 ~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
++.+||+||.|..++. +.++.+++ ++|.+++....
T Consensus 44 ~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 44 TKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred hccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 3457999999987763 34554433 56776665443
No 94
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=28.74 E-value=62 Score=26.10 Aligned_cols=39 Identities=8% Similarity=-0.068 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEcCCCC
Q 044094 13 QLHVFFVPFMSPGHQIP-MIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P-~l~La~~La~~G~~VT~vtt~~~ 52 (279)
..||++.-..+ +...- ..+|.++|.++|++|.++.|+.-
T Consensus 5 ~k~IllgiTGs-iaayk~~~~ll~~L~~~g~eV~vv~T~~A 44 (207)
T 3mcu_A 5 GKRIGFGFTGS-HCTYEEVMPHLEKLIAEGAEVRPVVSYTV 44 (207)
T ss_dssp TCEEEEEECSC-GGGGTTSHHHHHHHHHTTCEEEEEECC--
T ss_pred CCEEEEEEECh-HHHHHHHHHHHHHHHhCCCEEEEEEehHH
Confidence 34676654444 45554 78999999999999999988754
No 95
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=28.73 E-value=50 Score=26.19 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=25.4
Q ss_pred hcCCCEEEecCCCCchHHHHHHhCCCeEEEeccc
Q 044094 121 QCQPDAIISDMNFPWTAEIARKYGIPRLVYHGTC 154 (279)
Q Consensus 121 ~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~~ 154 (279)
+..+++||-|.. +.+.|+++|+|.+...++-
T Consensus 140 ~~G~~vvVG~~~---~~~~A~~~Gl~~vli~sg~ 170 (196)
T 2q5c_A 140 TENIKIVVSGKT---VTDEAIKQGLYGETINSGE 170 (196)
T ss_dssp HTTCCEEEECHH---HHHHHHHTTCEEEECCCCH
T ss_pred HCCCeEEECCHH---HHHHHHHcCCcEEEEecCH
Confidence 368999999864 6899999999998777643
No 96
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.61 E-value=1.1e+02 Score=22.00 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=22.4
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
.+.+.+||+||.|..++. +.++.+++ ++|++++...
T Consensus 53 ~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 53 LLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp HHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCC
T ss_pred HHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECC
Confidence 345578999999998763 34444332 4666655443
No 97
>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A
Probab=28.45 E-value=75 Score=25.70 Aligned_cols=46 Identities=13% Similarity=0.011 Sum_probs=24.4
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 1 MAPSSTKTHDHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 1 ~~~~~~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
|++......+.-+.+.+++. .+-|-+ -..++++|+++|++|+++.-
T Consensus 1 ~~~~~~~~~~~l~~k~vlIT-Gasggi--G~~la~~l~~~G~~V~~~~r 46 (266)
T 1xq1_A 1 MAGAEQSQRWSLKAKTVLVT-GGTKGI--GHAIVEEFAGFGAVIHTCAR 46 (266)
T ss_dssp ------CCTTCCTTCEEEET-TTTSHH--HHHHHHHHHHTTCEEEEEES
T ss_pred CCccccCCCCCCCCCEEEEE-CCCCHH--HHHHHHHHHHCCCEEEEEeC
Confidence 56655444432222344443 334433 46889999999999988753
No 98
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=28.40 E-value=93 Score=23.84 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=29.7
Q ss_pred EEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEcCCCChhhh
Q 044094 16 VFFVPFMSPGHQIP-MIDMARIFASRGVKATILTTPLNISRF 56 (279)
Q Consensus 16 vv~vp~p~~GH~~P-~l~La~~La~~G~~VT~vtt~~~~~~~ 56 (279)
++++--|-.-=.+| .+-|+.+|..+|++||+..++.-...+
T Consensus 10 LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLl 51 (157)
T 1kjn_A 10 LMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLV 51 (157)
T ss_dssp EEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHH
T ss_pred eEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhhe
Confidence 34556666655566 688999999999999999887544333
No 99
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=28.35 E-value=91 Score=26.02 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCEEEecCCCC------chHHHHHHhCCCeEEEecc
Q 044094 115 ADDLVRQCQPDAIISDMNFP------WTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~t~ 153 (279)
+.+++++..||+|++-.-.. .+..+|.+||+|.+.+.+.
T Consensus 104 La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 104 LTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 34455555799999987552 4689999999999988754
No 100
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=28.28 E-value=1.2e+02 Score=20.89 Aligned_cols=36 Identities=14% Similarity=0.352 Sum_probs=22.1
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh------CCCeEEEecc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY------GIPRLVYHGT 153 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l------giP~v~f~t~ 153 (279)
.+++.+||+||.|..++. +.++.+++ ..|.+++.+.
T Consensus 45 ~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 45 KLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeC
Confidence 345578999999988763 34444432 3455555544
No 101
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=28.21 E-value=53 Score=26.45 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEcCCCChh
Q 044094 11 HEQLHVFFVPFMSPGHQIPMIDMARIFAS-RGVKATILTTPLNIS 54 (279)
Q Consensus 11 ~~~~hvv~vp~p~~GH~~P~l~La~~La~-~G~~VT~vtt~~~~~ 54 (279)
.++.||++.-..+.| ..=..+|.++|.+ +|++|.++.|+.-.+
T Consensus 17 l~~k~IllgvTGsia-a~k~~~lv~~L~~~~g~~V~vv~T~~A~~ 60 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVA-ALKLPLLVSKLLDIPGLEVAVVTTERAKH 60 (206)
T ss_dssp CSSEEEEEEECSSGG-GGTHHHHHHHHC---CEEEEEEECTGGGG
T ss_pred cCCCEEEEEEeChHH-HHHHHHHHHHHhcccCCEEEEEECHhHHH
Confidence 344677777666665 4456999999998 899999998875433
No 102
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=28.20 E-value=1.1e+02 Score=21.33 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=21.8
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHH-------hCCCeEEEec
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARK-------YGIPRLVYHG 152 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~-------lgiP~v~f~t 152 (279)
.+++.+||+||.|..++. +.++.++ -++|.+++..
T Consensus 45 ~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 45 QVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEec
Confidence 345578999999987763 3444433 2456665543
No 103
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=27.91 E-value=94 Score=25.81 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=29.3
Q ss_pred HHHHHHhcCCCEEEecCCCC------chHHHHHHhCCCeEEEecc
Q 044094 115 ADDLVRQCQPDAIISDMNFP------WTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~t~ 153 (279)
+.+++++.+||+|++-.-.. .+..+|.+||+|.+.+.+.
T Consensus 108 La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 108 LAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 34445556799999887552 4689999999999988654
No 104
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=27.86 E-value=1e+02 Score=21.70 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=21.8
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
.+++.+||+||.|. +.. +.++.+++ ++|++++....
T Consensus 43 ~l~~~~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 43 FLRREKIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHTTSCCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHhccCCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 34456899999999 653 23333322 47777665443
No 105
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=27.83 E-value=72 Score=25.44 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
+..|+++.-++.|=..-.+.+|.+.+.+|.+|-|+..
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 4578899999999999999999999999999999954
No 106
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=27.75 E-value=43 Score=27.57 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=20.5
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 24 PGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 24 ~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
.|.+- ..+|++|+.+|++||++..+.
T Consensus 28 SG~mG--~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 28 TGHLG--KIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp CCHHH--HHHHHHHHHTTCEEEEEECTT
T ss_pred CCHHH--HHHHHHHHHCCCEEEEEeCCc
Confidence 56543 457999999999999997653
No 107
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=27.41 E-value=52 Score=30.18 Aligned_cols=34 Identities=24% Similarity=0.094 Sum_probs=25.8
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 114 QADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
.+++++++.+||++|... ....+|+++|||.+.+
T Consensus 392 el~~~i~~~~pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 392 VLLKTVDEYQADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp HHHHHHHHTTCSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred HHHHHHHhcCCCEEEECC---chhHHHHHcCCCEEEe
Confidence 344556667899999854 5778999999998754
No 108
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=27.29 E-value=1.1e+02 Score=20.67 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=20.8
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-------CCCeEEEec
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-------GIPRLVYHG 152 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~t 152 (279)
+++.+||+||.|..++. +.++.+++ ++|.+++..
T Consensus 41 ~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~ 83 (124)
T 1mb3_A 41 ARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTA 83 (124)
T ss_dssp HHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC-
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEEC
Confidence 34457999999987763 34444432 466665543
No 109
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=27.19 E-value=1.5e+02 Score=21.21 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=22.7
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHH-----hCCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARK-----YGIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~-----lgiP~v~f~t~~ 154 (279)
+.+.+||+||.|..+.. +.++.++ -++|++++....
T Consensus 47 l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 47 YRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 44567999999987752 3444333 257877765543
No 110
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.15 E-value=65 Score=29.17 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=18.2
Q ss_pred HHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEE
Q 044094 115 ADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLV 149 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 149 (279)
+++++++.+||++|.+. +...+|+++|||.+.
T Consensus 377 l~~~i~~~~pDl~ig~~---~~~~~a~k~gip~~~ 408 (458)
T 1mio_B 377 VHQWIKNEGVDLLISNT---YGKFIAREENIPFVR 408 (458)
T ss_dssp HHHHHHHSCCSEEEESG---GGHHHHHHHTCCEEE
T ss_pred HHHHHHhcCCCEEEeCc---chHHHHHHcCCCEEE
Confidence 33444445666666554 345666667776654
No 111
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=27.09 E-value=1.2e+02 Score=24.05 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
+++++.- +-|-+ -..+|++|+++|++|.++.
T Consensus 15 k~vlITG-as~gI--G~~ia~~l~~~G~~V~~~~ 45 (247)
T 3i1j_A 15 RVILVTG-AARGI--GAAAARAYAAHGASVVLLG 45 (247)
T ss_dssp CEEEESS-TTSHH--HHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEeC-CCChH--HHHHHHHHHHCCCEEEEEe
Confidence 4455533 33433 3688999999999988774
No 112
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=26.98 E-value=42 Score=27.17 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=23.9
Q ss_pred CCCEEEecCCCCchHHHHHHhCCCeEEEecc
Q 044094 123 QPDAIISDMNFPWTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 123 ~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t~ 153 (279)
.+.+||+|---..+...|+++|||.+.+-+.
T Consensus 31 eI~~Visn~~~a~v~~~A~~~gIp~~~~~~~ 61 (211)
T 3p9x_A 31 EVALLITDKPGAKVVERVKVHEIPVCALDPK 61 (211)
T ss_dssp EEEEEEESCSSSHHHHHHHTTTCCEEECCGG
T ss_pred EEEEEEECCCCcHHHHHHHHcCCCEEEeChh
Confidence 4678999854445678999999999887554
No 113
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=26.81 E-value=1e+02 Score=21.75 Aligned_cols=36 Identities=11% Similarity=0.032 Sum_probs=23.3
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh----CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY----GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l----giP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.+++ .+|.+++....
T Consensus 44 ~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 44 IFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 34468999999987753 44554443 57777665443
No 114
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=26.76 E-value=1.2e+02 Score=20.83 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=20.2
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
.+++.+||+||.|..++. +.++.+++ ++|.+++...
T Consensus 46 ~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~ 88 (130)
T 3eod_A 46 LLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISAT 88 (130)
T ss_dssp HHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 345578999999987653 23333322 4666665444
No 115
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.67 E-value=1.1e+02 Score=25.69 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=40.3
Q ss_pred cEEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC---CCChhhhhhccccCCCCCCCCeEEEEec
Q 044094 14 LHVF-FVPFMSPGHQIPMIDMARIFASRGVKATILTT---PLNISRFESSINRDDYHHHNPIKLLLLN 77 (279)
Q Consensus 14 ~hvv-~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt---~~~~~~~~~~~~~~~~~~~~~i~~~~lp 77 (279)
.+|+ ++-.+...|-.=+..|+|++.+.|+.|+++.. ..+.++++......+...+.+-+++.+|
T Consensus 108 ~rIIlf~ds~~~~~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~ 175 (268)
T 4b4t_W 108 QRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVT 175 (268)
T ss_dssp EEEEEEECSCCSSCHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEEC
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeC
Confidence 3455 44567778888899999999999999999864 2344555543221111012335677665
No 116
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=26.32 E-value=91 Score=25.82 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=28.7
Q ss_pred HHHHHhcCCCEEEecCCCC------chHHHHHHhCCCeEEEecc
Q 044094 116 DDLVRQCQPDAIISDMNFP------WTAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 116 ~~ll~~~~~d~vI~D~~~~------~~~~vA~~lgiP~v~f~t~ 153 (279)
.+++++.+||+|++-.-.. .+..+|.+||+|.+.+.+.
T Consensus 106 a~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 106 AAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 3444445799999887552 4689999999999988754
No 117
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=26.24 E-value=71 Score=22.75 Aligned_cols=40 Identities=18% Similarity=0.016 Sum_probs=24.5
Q ss_pred HHHHHHHh-cCCCEEEecCCCCch--HHHHHHh-----CCCeEEEecc
Q 044094 114 QADDLVRQ-CQPDAIISDMNFPWT--AEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 114 ~l~~ll~~-~~~d~vI~D~~~~~~--~~vA~~l-----giP~v~f~t~ 153 (279)
.+..+.+. .+||+||.|..++.. .++.+++ ++|++++...
T Consensus 57 ~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 57 QIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp HHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCC
Confidence 34444445 789999999987642 3444322 5676666544
No 118
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=26.16 E-value=1.3e+02 Score=20.87 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=21.9
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
+.+.+||+||.|..++. +.++.+++ ++|.+++...
T Consensus 43 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 43 IENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp HHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESC
T ss_pred HhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEecc
Confidence 34567999999987763 34444332 4666665544
No 119
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=26.05 E-value=1.2e+02 Score=20.60 Aligned_cols=32 Identities=19% Similarity=0.381 Sum_probs=20.7
Q ss_pred HHhcCCCEEEecCCCC---chHHHHHH-------hCCCeEEE
Q 044094 119 VRQCQPDAIISDMNFP---WTAEIARK-------YGIPRLVY 150 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~---~~~~vA~~-------lgiP~v~f 150 (279)
+++.+||+||.|..++ .+.++.++ -++|++++
T Consensus 45 ~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 45 IRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp HHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred HHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 3446799999998765 23343332 35787777
No 120
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=25.69 E-value=1.2e+02 Score=21.56 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=22.8
Q ss_pred HHHHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 117 DLVRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 117 ~ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
+.+++.+||+||.|.-+.. +.++.+++ ++|++++...
T Consensus 60 ~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 60 QLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp HHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred HHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCC
Confidence 3345578999999987653 34444432 4666655544
No 121
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=25.61 E-value=1.5e+02 Score=19.81 Aligned_cols=36 Identities=25% Similarity=0.471 Sum_probs=22.8
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.+++ ++|++++....
T Consensus 40 ~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 40 LNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 44568999999987763 34444332 46777665443
No 122
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=25.56 E-value=1.2e+02 Score=25.44 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCCC-----hHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 13 QLHVFFVPFMSPGH-----QIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 13 ~~hvv~vp~p~~GH-----~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+.+|+++ +.+++. +....++++.|.+.||+|..+.+..
T Consensus 13 ~~~v~vl-~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 13 FGKVAVL-FGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp GCEEEEE-CCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred cceEEEE-ECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4577766 344443 4578899999999999999997543
No 123
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=25.27 E-value=1e+02 Score=22.57 Aligned_cols=28 Identities=18% Similarity=0.075 Sum_probs=23.0
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 23 SPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 23 ~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
........+.||...++.|++|+++-+.
T Consensus 28 ~~~~~~~al~lA~~A~a~g~eV~vFf~~ 55 (134)
T 3mc3_A 28 DLDRTYAPLFMASISASMEYETSVFFMI 55 (134)
T ss_dssp GTHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEEe
Confidence 4567778889999999999999988654
No 124
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=25.24 E-value=1.3e+02 Score=21.14 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=21.2
Q ss_pred HhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 120 RQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 120 ~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
.+.+||+||.|..++. +.++.+++ ++|.+++...
T Consensus 45 ~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 45 ERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp HHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred HhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 3457999999987763 44554433 4566655443
No 125
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=25.21 E-value=1.2e+02 Score=20.73 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=17.4
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY 143 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l 143 (279)
+++.++|+||.|..++. +.++.+++
T Consensus 47 ~~~~~~dlvl~D~~l~~~~g~~~~~~l 73 (129)
T 1p6q_A 47 MAQNPHHLVISDFNMPKMDGLGLLQAV 73 (129)
T ss_dssp HHTSCCSEEEECSSSCSSCHHHHHHHH
T ss_pred HHcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 44567999999987763 45665544
No 126
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=25.03 E-value=62 Score=29.75 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEE
Q 044094 114 QADDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLV 149 (279)
Q Consensus 114 ~l~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 149 (279)
.+++++++.+||++|... ....+|+++|||.+-
T Consensus 408 el~~~i~~~~pDL~ig~~---~~~~ia~k~gIP~~~ 440 (492)
T 3u7q_A 408 EFEEFVKRIKPDLIGSGI---KEKFIFQKMGIPFRE 440 (492)
T ss_dssp HHHHHHHHHCCSEEEECH---HHHHHHHHTTCCEEE
T ss_pred HHHHHHHhcCCcEEEeCc---chhHHHHHcCCCEEe
Confidence 344556667899999864 467899999999885
No 127
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=24.94 E-value=61 Score=25.77 Aligned_cols=40 Identities=10% Similarity=-0.118 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
+.||++.-..+.|=+. ..+|.++|.++|++|.++.|+.-.
T Consensus 8 ~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~A~ 47 (194)
T 1p3y_1 8 DKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKTAE 47 (194)
T ss_dssp GCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHHHH
T ss_pred CCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchhHH
Confidence 4577776666655554 789999999999999999886543
No 128
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=24.84 E-value=67 Score=27.60 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=23.9
Q ss_pred HHHHHHhcCCCEEEecCCCC-chHHHHHHhCCCeEEEec
Q 044094 115 ADDLVRQCQPDAIISDMNFP-WTAEIARKYGIPRLVYHG 152 (279)
Q Consensus 115 l~~ll~~~~~d~vI~D~~~~-~~~~vA~~lgiP~v~f~t 152 (279)
+|++++ .+||+||...... -.....+++|||++++-.
T Consensus 89 ~E~Ila-l~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 89 LESLIT-LQPDVVFITYVDRXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp HHHHHH-HCCSEEEEESCCHHHHHHHHHHHTSCEEEECC
T ss_pred HHHHhc-CCCCEEEEeCCccchHHHHHHhcCCcEEEEec
Confidence 444443 6899999865421 123456789999999853
No 129
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=24.83 E-value=1.5e+02 Score=22.82 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=23.9
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.+++ ++|++++....
T Consensus 42 ~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 84 (225)
T 1kgs_A 42 ALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALS 84 (225)
T ss_dssp HHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSC
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 44568999999998763 44444432 67887776554
No 130
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=24.74 E-value=1.4e+02 Score=21.38 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=22.1
Q ss_pred HHHHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 117 DLVRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 117 ~ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
+.+++.+||+||.|..++. +.++.+++ ++|++++...
T Consensus 55 ~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 98 (152)
T 3eul_A 55 ELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAH 98 (152)
T ss_dssp HHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESC
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEcc
Confidence 3445578999999987653 34444332 3565555443
No 131
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=24.28 E-value=1.1e+02 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=24.6
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEec
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHG 152 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t 152 (279)
+++.++.||+++..+.- +..+|++.|++.+.+.+
T Consensus 224 ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~l~p 259 (286)
T 3gi1_A 224 VKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKTLSP 259 (286)
T ss_dssp HHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEECCC
T ss_pred HHHcCCCEEEEeCCCChHHHHHHHHHhCCeEEEecc
Confidence 44467888888877653 36778888888877653
No 132
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=24.17 E-value=1.6e+02 Score=20.73 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHH-------hCCCeEEEecc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARK-------YGIPRLVYHGT 153 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~-------lgiP~v~f~t~ 153 (279)
.+.+.+||+||.|..++. +.++.++ -++|.+++...
T Consensus 46 ~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 46 QVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCC
Confidence 344568999999987763 3344332 24566655443
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.95 E-value=1.6e+02 Score=26.67 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCCh
Q 044094 13 QLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNI 53 (279)
Q Consensus 13 ~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~ 53 (279)
+..|+++-.++.|=..-...||..|+.+|.+|.++......
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 34566888899999999999999999999999999876553
No 134
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=23.84 E-value=1.4e+02 Score=21.14 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=16.1
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHH
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARK 142 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~ 142 (279)
+.+.+||+||.|..++. +.++.++
T Consensus 45 ~~~~~~dlvllD~~lp~~~g~~l~~~ 70 (141)
T 3cu5_A 45 ALKHPPNVLLTDVRMPRMDGIELVDN 70 (141)
T ss_dssp HTTSCCSEEEEESCCSSSCHHHHHHH
T ss_pred HhcCCCCEEEEeCCCCCCCHHHHHHH
Confidence 34467999999987763 4455443
No 135
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.68 E-value=1.7e+02 Score=20.43 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=19.0
Q ss_pred cCCCEEEecCCCC---chHHHHHH----hCCCeEEEe
Q 044094 122 CQPDAIISDMNFP---WTAEIARK----YGIPRLVYH 151 (279)
Q Consensus 122 ~~~d~vI~D~~~~---~~~~vA~~----lgiP~v~f~ 151 (279)
.+||+||.|..++ .+.++.++ -++|++++.
T Consensus 49 ~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls 85 (140)
T 3h5i_A 49 WYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLT 85 (140)
T ss_dssp CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEE
T ss_pred CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 6899999998774 23444432 356666544
No 136
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=23.61 E-value=64 Score=25.36 Aligned_cols=39 Identities=10% Similarity=0.011 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNIS 54 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~ 54 (279)
||++.-..+.|=+ =..+|.++|.++|++|.++.|+.-.+
T Consensus 4 ~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~ 42 (181)
T 1g63_A 4 KLLICATASINVI-NINHYIVELKQHFDEVNILFSPSSKN 42 (181)
T ss_dssp CEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGGGG
T ss_pred EEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHHH
Confidence 5666555555444 67899999999999999998875443
No 137
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=23.42 E-value=1.3e+02 Score=24.08 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=35.2
Q ss_pred CCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 10 DHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 10 ~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
.++...+++.-.++.|=..=+.+|+..|+ +|.+|.++....
T Consensus 11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 34456777899999999999999999999 999999997654
No 138
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=23.37 E-value=1.3e+02 Score=20.93 Aligned_cols=35 Identities=11% Similarity=-0.018 Sum_probs=22.1
Q ss_pred HHHHh-cCCCEEEecCCCC--chHHHHHHh-----CCCeEEEe
Q 044094 117 DLVRQ-CQPDAIISDMNFP--WTAEIARKY-----GIPRLVYH 151 (279)
Q Consensus 117 ~ll~~-~~~d~vI~D~~~~--~~~~vA~~l-----giP~v~f~ 151 (279)
+.+++ .++|+||.|..++ .+.++.+++ ++|++++.
T Consensus 53 ~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 53 QHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 34556 6899999998775 345555544 35555443
No 139
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=23.29 E-value=1.6e+02 Score=22.77 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=22.1
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEec
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHG 152 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t 152 (279)
+.+.+||+||.|..++. +.++.+++ ++|++++..
T Consensus 47 ~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (233)
T 1ys7_A 47 ATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp HHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 44568999999987763 44444332 577776654
No 140
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.78 E-value=1.2e+02 Score=21.81 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=23.2
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.+++ ++|++++....
T Consensus 43 l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (155)
T 1qkk_A 43 LSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHG 85 (155)
T ss_dssp CCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGG
T ss_pred HHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCC
Confidence 33467999999987753 34444332 68888775544
No 141
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.76 E-value=1.8e+02 Score=20.35 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=22.8
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHH-------hCCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARK-------YGIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~-------lgiP~v~f~t~~ 154 (279)
.+.+.+||+||.|..+.. +.++.++ -++|++++....
T Consensus 47 ~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 92 (147)
T 2zay_A 47 VAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRA 92 (147)
T ss_dssp HHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSC
T ss_pred HHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCC
Confidence 344568999999987653 3444432 346777665443
No 142
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=22.76 E-value=85 Score=25.57 Aligned_cols=37 Identities=11% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHH---hcCCCEEEecCCCCchHHHHHHhCCCeEEEec
Q 044094 113 PQADDLVR---QCQPDAIISDMNFPWTAEIARKYGIPRLVYHG 152 (279)
Q Consensus 113 ~~l~~ll~---~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f~t 152 (279)
+.+++.+. +..+++||-|.. +.+.|+++|+|.+...+
T Consensus 141 ee~~~~i~~l~~~G~~vVVG~~~---~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 141 EDARGQINELKANGTEAVVGAGL---ITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHHHHHHHHHTTCCEEEESHH---HHHHHHHTTSEEEESSC
T ss_pred HHHHHHHHHHHHCCCCEEECCHH---HHHHHHHcCCcEEEECC
Confidence 34444443 367999999864 68999999999998774
No 143
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=22.73 E-value=82 Score=25.98 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
++++|.-.+.| =-..+|++|+++|++|.++.
T Consensus 13 k~vlITGas~G---IG~~~a~~L~~~G~~V~~~~ 43 (311)
T 3o26_A 13 RCAVVTGGNKG---IGFEICKQLSSNGIMVVLTC 43 (311)
T ss_dssp CEEEESSCSSH---HHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEecCCch---HHHHHHHHHHHCCCEEEEEe
Confidence 56666554433 34689999999999988775
No 144
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=22.63 E-value=1.4e+02 Score=22.94 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=23.2
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.++.+++ ++|.+++....
T Consensus 47 ~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ls~~~ 89 (215)
T 1a04_A 47 AESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSN 89 (215)
T ss_dssp HHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEEECCC
T ss_pred HHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEECCC
Confidence 34457999999998763 45555443 46766665543
No 145
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=22.61 E-value=1.6e+02 Score=23.44 Aligned_cols=37 Identities=27% Similarity=0.438 Sum_probs=24.7
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~~ 154 (279)
.+.+.+||+||.|..++. +.++++++ ++|.+++....
T Consensus 62 ~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 62 RARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp HHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECST
T ss_pred HHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCC
Confidence 345568999999998763 45555433 57877766544
No 146
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}
Probab=22.40 E-value=1.5e+02 Score=22.60 Aligned_cols=35 Identities=23% Similarity=0.110 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
+-||++ ....|+-.-+..+++.|+++|+.|..+..
T Consensus 33 p~vv~~-HG~~g~~~~~~~~~~~l~~~G~~v~~~d~ 67 (241)
T 3f67_A 33 PIVIVV-QEIFGVHEHIRDLCRRLAQEGYLAIAPEL 67 (241)
T ss_dssp EEEEEE-CCTTCSCHHHHHHHHHHHHTTCEEEEECT
T ss_pred CEEEEE-cCcCccCHHHHHHHHHHHHCCcEEEEecc
Confidence 344444 44667778899999999999998877754
No 147
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=22.17 E-value=1.2e+02 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=21.7
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
+...+||+||.|..++. +.++.+++ ++|.+++...
T Consensus 40 ~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (139)
T 2jk1_A 40 LEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGY 81 (139)
T ss_dssp HHHSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESC
T ss_pred HhcCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCC
Confidence 34467999999998763 44444433 4566655443
No 148
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=21.84 E-value=66 Score=23.86 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 12 EQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 12 ~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
...+|+++ |.|.+- ..+++.|.++|++|+++..
T Consensus 18 ~~~~v~Ii---G~G~iG--~~la~~L~~~g~~V~vid~ 50 (155)
T 2g1u_A 18 KSKYIVIF---GCGRLG--SLIANLASSSGHSVVVVDK 50 (155)
T ss_dssp CCCEEEEE---CCSHHH--HHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEE---CCCHHH--HHHHHHHHhCCCeEEEEEC
Confidence 34589888 346665 4578899999999999864
No 149
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=21.67 E-value=1.2e+02 Score=21.26 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=11.9
Q ss_pred HHhcCCCEEEecCCCC
Q 044094 119 VRQCQPDAIISDMNFP 134 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~ 134 (279)
+++.+||+||.|..++
T Consensus 42 ~~~~~~dlvi~D~~l~ 57 (140)
T 3n53_A 42 IDHHHPDLVILDMDII 57 (140)
T ss_dssp HHHHCCSEEEEETTC-
T ss_pred HhcCCCCEEEEeCCCC
Confidence 3446899999998765
No 150
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=21.62 E-value=1.8e+02 Score=20.22 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=20.8
Q ss_pred hcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 121 QCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 121 ~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
+.+||+||.|..++. +.++.+++ ++|++++...
T Consensus 47 ~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 86 (143)
T 3jte_A 47 CNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGH 86 (143)
T ss_dssp TTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECT
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECC
Confidence 368999999987753 34444332 4676665443
No 151
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=21.60 E-value=77 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 044094 14 LHVFFVPFMSPGHQIPMIDMARIFASRGVKATILTT 49 (279)
Q Consensus 14 ~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt 49 (279)
.||.|+-.-+.| |-.+|+.|+++|++|+..=.
T Consensus 5 ~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~ 36 (326)
T 3eag_A 5 KHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDA 36 (326)
T ss_dssp CEEEEESCCSHH----HHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcC
Confidence 478888766666 55799999999999999844
No 152
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=21.59 E-value=2e+02 Score=19.54 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=22.0
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-------CCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-------GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~t~ 153 (279)
+.+.+||+||.|..++. +.++.+++ .+|.+++...
T Consensus 45 ~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 45 LQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp HTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESS
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecC
Confidence 34467999999998763 45555443 3566655443
No 153
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=21.57 E-value=1.6e+02 Score=23.58 Aligned_cols=37 Identities=22% Similarity=0.448 Sum_probs=24.8
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHH----hCCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARK----YGIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~----lgiP~v~f~t~~ 154 (279)
.+.+.+||+||.|..++. +.++.++ -++|++++....
T Consensus 76 ~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 76 KAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 344568999999998874 3445443 357877776544
No 154
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=21.50 E-value=49 Score=29.81 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 044094 1 MAPSSTKTHDHEQLHVFFVPFMSPGHQIPMIDMARIFASRGVKATILT 48 (279)
Q Consensus 1 ~~~~~~~~~~~~~~hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vt 48 (279)
|+...+...+.++.+|+++-- | .--|-.|..|+++|++|+++=
T Consensus 1 m~~~~~~~~~~~~~~v~iiG~---G--~~Gl~aA~~l~~~g~~v~v~E 43 (504)
T 1sez_A 1 MAPSAGEDKHSSAKRVAVIGA---G--VSGLAAAYKLKIHGLNVTVFE 43 (504)
T ss_dssp ------------CCEEEEECC---S--HHHHHHHHHHHTTSCEEEEEC
T ss_pred CCCCCCCCccCCCCeEEEECC---C--HHHHHHHHHHHHCCCcEEEEE
Confidence 444333333444568888843 3 345778889999999999983
No 155
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=21.48 E-value=97 Score=23.37 Aligned_cols=37 Identities=14% Similarity=0.053 Sum_probs=23.5
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHH-----hCCCeEEEeccc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARK-----YGIPRLVYHGTC 154 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~-----lgiP~v~f~t~~ 154 (279)
.+.+.+||+||.|..++. +.+++++ -++|.+++....
T Consensus 46 ~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 46 LAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 345578999999998763 3444433 247776665543
No 156
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=21.45 E-value=1.8e+02 Score=19.06 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=21.4
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHH-------hCCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARK-------YGIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~-------lgiP~v~f~t~ 153 (279)
+.+.++|+||.|..+.. +.++.++ -++|++++...
T Consensus 41 l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 41 LDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 34467999999987652 2333322 35777766544
No 157
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=21.39 E-value=1.3e+02 Score=24.84 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=31.4
Q ss_pred CcEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 13 QLHVFFVP--FMSPGHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 13 ~~hvv~vp--~p~~GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+.++++|. -++.|=..-...||..|+++|.+|.++-...
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34555553 4788999999999999999999999986653
No 158
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=21.25 E-value=1.3e+02 Score=23.74 Aligned_cols=42 Identities=5% Similarity=0.028 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCChhhhh
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTPLNISRFE 57 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~~~~~~ 57 (279)
||++.-..+.|-+ =..+|.++|.++|++|.++.|+.-.+.+.
T Consensus 3 ~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~~i~ 44 (189)
T 2ejb_A 3 KIALCITGASGVI-YGIKLLQVLEELDFSVDLVISRNAKVVLK 44 (189)
T ss_dssp EEEEEECSSTTHH-HHHHHHHHHHHTTCEEEEEECHHHHHHHH
T ss_pred EEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHhh
Confidence 7887777887855 57899999999999999998875444333
No 159
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.14 E-value=1.1e+02 Score=23.30 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=22.6
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEecc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYHGT 153 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~t~ 153 (279)
+...+||+||.|..++. +.++.+++ ++|++++...
T Consensus 44 ~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 44 RRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp CCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESC
T ss_pred hhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 34467999999998763 45554433 5777766543
No 160
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=21.12 E-value=1.8e+02 Score=22.54 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=33.3
Q ss_pred CCCCCCCCCCCCCcEEEEEcCCC-------C-CCh--HHHHHHHHHHHhCCCeEEEE-cCCCChhhhhhcc
Q 044094 1 MAPSSTKTHDHEQLHVFFVPFMS-------P-GHQ--IPMIDMARIFASRGVKATIL-TTPLNISRFESSI 60 (279)
Q Consensus 1 ~~~~~~~~~~~~~~hvv~vp~p~-------~-GH~--~P~l~La~~La~~G~~VT~v-tt~~~~~~~~~~~ 60 (279)
|..++|+.+..++++|.+++.-- . |.+ .----|+.+|.+.|++|+.. ..++..+.+...+
T Consensus 3 ~~~~~h~~~~~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al 73 (178)
T 2pjk_A 3 HAHKKHKENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAF 73 (178)
T ss_dssp ----------CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHH
T ss_pred CchHHHHhcCCCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHH
Confidence 34566666677788998887763 3 433 22334788889999998875 3456666665543
No 161
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=20.96 E-value=57 Score=28.16 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 25 GHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 25 GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
|.+- ..+|+.++.+|++||+++.+..
T Consensus 65 GkmG--~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 65 GRRG--ATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp CHHH--HHHHHHHHHTTCEEEEEEETTS
T ss_pred cHHH--HHHHHHHHHCCCEEEEEecCCC
Confidence 5444 4578999999999999987543
No 162
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=20.92 E-value=1.2e+02 Score=25.89 Aligned_cols=36 Identities=8% Similarity=0.165 Sum_probs=24.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 044094 15 HVFFVPFMSPGHQIPMIDMARIFASRGVKATILTTP 50 (279)
Q Consensus 15 hvv~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~ 50 (279)
+++++--|..|.-.-.-++.+.|.++|+++.+..|.
T Consensus 31 ~~~vi~Np~sg~~~~~~~i~~~l~~~g~~~~~~~t~ 66 (332)
T 2bon_A 31 ASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTW 66 (332)
T ss_dssp CEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECC
T ss_pred eEEEEECCCCCCCchHHHHHHHHHHcCCcEEEEEec
Confidence 455554555544344567888888899999988665
No 163
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=20.92 E-value=73 Score=27.50 Aligned_cols=36 Identities=11% Similarity=0.113 Sum_probs=25.8
Q ss_pred EEEEE-c-CCCC-CChHHHHHHHHHHHhCCCeEEEEcCCC
Q 044094 15 HVFFV-P-FMSP-GHQIPMIDMARIFASRGVKATILTTPL 51 (279)
Q Consensus 15 hvv~v-p-~p~~-GH~~P~l~La~~La~~G~~VT~vtt~~ 51 (279)
+|+++ + +|.. |.-.-+..|++.|+++ |+|++++...
T Consensus 2 kI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~ 40 (413)
T 3oy2_A 2 KLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHA 40 (413)
T ss_dssp EEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESC
T ss_pred eEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecC
Confidence 56655 3 2333 4556688999999999 9999987543
No 164
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=20.69 E-value=1e+02 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=26.5
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCCC
Q 044094 18 FVPFMSPGHQIPMIDMARIFASRGVKATILTTPLN 52 (279)
Q Consensus 18 ~vp~p~~GH~~P~l~La~~La~~G~~VT~vtt~~~ 52 (279)
++.....-...+.+.+|...++.|++|+++-|..-
T Consensus 13 I~~sg~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~g 47 (144)
T 2qs7_A 13 IVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWG 47 (144)
T ss_dssp EECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHHH
T ss_pred EEEcCCHHHHHHHHHHHHHHHHcCCcEEEEEehHH
Confidence 33334456778889999999999999999977543
No 165
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Probab=20.66 E-value=2.6e+02 Score=24.60 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCEEEecCCCCc-------hHHHHHHhCCCeEEEeccchHHHHHHHHHH
Q 044094 113 PQADDLVRQCQPDAIISDMNFPW-------TAEIARKYGIPRLVYHGTCCFSLSLSVAAA 165 (279)
Q Consensus 113 ~~l~~ll~~~~~d~vI~D~~~~~-------~~~vA~~lgiP~v~f~t~~a~~~~~~~~~~ 165 (279)
..++++++....|.|..|..-.. ...+|+.+|++++.-+..+...+++..|+-
T Consensus 274 ~~~~~~l~~~a~d~v~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~s~i~~aa~~hla 333 (400)
T 4dxk_A 274 WAFRDLLETGAAGVVMLDISWCGGLSEARKIASMAEAWHLPVAPHXCTGPVVLCASTHLS 333 (400)
T ss_dssp HHHHHHHHTTCCCEEEECTTTTTHHHHHHHHHHHHHHTTCCEEEC-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEecCCCChHHHHHHHHHH
Confidence 56677777778999999986542 257789999999875444555555555554
No 166
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=20.51 E-value=1.8e+02 Score=22.58 Aligned_cols=36 Identities=11% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHH----hCCCeEEEeccc
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARK----YGIPRLVYHGTC 154 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~----lgiP~v~f~t~~ 154 (279)
+.+.+||+||.|..++. +.+++++ -++|++++....
T Consensus 44 ~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~~ 85 (230)
T 2oqr_A 44 FDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARD 85 (230)
T ss_dssp HHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECCH
T ss_pred HhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCCC
Confidence 34457999999987763 3444433 368888776554
No 167
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=20.48 E-value=2.2e+02 Score=19.76 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=15.9
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHH
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARK 142 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~ 142 (279)
+.+.+||+||.|..++. +.++.++
T Consensus 50 l~~~~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 50 YQNRQFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHSCCSEEEECTTCCSSCHHHHHHH
T ss_pred HhcCCCCEEEEeCCCCCCcHHHHHHH
Confidence 34467999999987753 4444443
No 168
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.31 E-value=2e+02 Score=19.83 Aligned_cols=36 Identities=19% Similarity=0.355 Sum_probs=21.5
Q ss_pred HHHhcCCCEEEecCCCCc--hHHHHHHh-------CCCeEEEecc
Q 044094 118 LVRQCQPDAIISDMNFPW--TAEIARKY-------GIPRLVYHGT 153 (279)
Q Consensus 118 ll~~~~~d~vI~D~~~~~--~~~vA~~l-------giP~v~f~t~ 153 (279)
.+++.+||+||.|..+.. +.++.+++ ++|++++...
T Consensus 49 ~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 49 LLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESS
T ss_pred HHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCC
Confidence 344567999999987652 34444332 3566655443
No 169
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=20.24 E-value=83 Score=28.93 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=22.1
Q ss_pred HHHHHhcCCCEEEecCCCCchHHHHHHhCCCeEEE
Q 044094 116 DDLVRQCQPDAIISDMNFPWTAEIARKYGIPRLVY 150 (279)
Q Consensus 116 ~~ll~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~f 150 (279)
++++++.+||++|.+. +...+|+++|||.+.+
T Consensus 365 ~~~i~~~~pDl~ig~~---~~r~~a~k~gip~~~i 396 (511)
T 2xdq_B 365 GDAIARVEPAAIFGTQ---MERHVGKRLNIPCGVI 396 (511)
T ss_dssp HHHHHHHCCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHhcCCCEEEecc---chHHHHHhcCCCeEec
Confidence 3444445778877653 4678889999998764
No 170
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=20.21 E-value=1.6e+02 Score=24.50 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=27.2
Q ss_pred HHHHhcCCCEEEecCCCCc--hHHHHHHhCCCeEEEecc
Q 044094 117 DLVRQCQPDAIISDMNFPW--TAEIARKYGIPRLVYHGT 153 (279)
Q Consensus 117 ~ll~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~f~t~ 153 (279)
+.+++.++.||+++..+.. +..+|++.|++.+.+-+.
T Consensus 217 ~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~~ld~l 255 (284)
T 2prs_A 217 TQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPL 255 (284)
T ss_dssp HHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEECCTT
T ss_pred HHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEEEeccC
Confidence 3455578899999987654 577888999988776443
No 171
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=20.21 E-value=2.2e+02 Score=19.54 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=19.8
Q ss_pred HHhcCCCEEEecCCCCc--hHHHHHHh-----CCCeEEEe
Q 044094 119 VRQCQPDAIISDMNFPW--TAEIARKY-----GIPRLVYH 151 (279)
Q Consensus 119 l~~~~~d~vI~D~~~~~--~~~vA~~l-----giP~v~f~ 151 (279)
+...+||+||.|..++. +.++.+++ .+|.+++.
T Consensus 43 ~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (136)
T 1mvo_A 43 AETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLT 82 (136)
T ss_dssp HHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred HhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 34457999999987753 34444332 45555543
Done!