BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044095
(308 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 127 LSSGSDSDRLAALYLLERSLLPNPPSDQACQP---ELMRALCLAESNRRVAVEAGAVGAV 183
+ SGSDS L LL NP S + + + ALCL + R +A+ AGA G +
Sbjct: 236 IISGSDSIFEGVL-----DLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGIL 290
Query: 184 IE-VVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAIS 242
I+ + A+ D ER LA +EL+C + EG HAL VP+MV + +++ R EYA
Sbjct: 291 IDRLAADFDRCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAG 350
Query: 243 VLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKEYGQPDTT--Q 300
L + ++ A + + L +Q +CT R +RK LLK L++ D+T
Sbjct: 351 ALLALCTAEERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHS 410
Query: 301 DEMN 304
D+ N
Sbjct: 411 DDFN 414
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 146 LLPNPPSDQACQP---ELMRALCLAESNRRVAVEAGAVGAVIE-VVAELDAAAGERALAA 201
LL NP S + + + ALC +S R +A+ AGA +I+ + A+ D ERALA
Sbjct: 248 LLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERALAT 307
Query: 202 LELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPE 261
+EL+C EG HAL VP++V + +++ R EYA L + ++ A
Sbjct: 308 VELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWREEAAGA 367
Query: 262 EVARAVELALQGNCTPR 278
V + L +Q CT R
Sbjct: 368 GVVVQLLLMVQSECTER 384
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 164 LCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVP 223
LC+ + N+ A+ AG V ++ +V A + A+A L ++ + EG A A VP
Sbjct: 518 LCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGA-AEPVP 576
Query: 224 VMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAV---ELALQGNCTPRGR 280
V+V M+G R +E A +V+ + G LV A +E V ELAL G T RG+
Sbjct: 577 VLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNG--TDRGK 634
Query: 281 RKGTQLLKSLKEY 293
RK QLL+ + +
Sbjct: 635 RKAVQLLERMSRF 647
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 164 LCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVP 223
L + E N+ + +GAV +++ V+ A E A A L +V + + T A+P
Sbjct: 436 LSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATL-FSLSVIDEYKVTIGGMGAIP 494
Query: 224 VMVTMMGQMAGRGKEYAISVL--AVIYGGGDQLVVAA 258
+V ++G+ + RGK+ A + L IY G + A
Sbjct: 495 ALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRA 531
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 164 LCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVP 223
LC+ + N+ A+ AG V ++ +V A + A+A L ++ + EG A A VP
Sbjct: 518 LCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGA-AEPVP 576
Query: 224 VMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAV---ELALQGNCTPRGR 280
V+V M+G R +E A +V+ + G LV A +E V ELAL G T RG+
Sbjct: 577 VLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNG--TDRGK 634
Query: 281 RKGTQLLKSLKEY 293
RK QLL+ + +
Sbjct: 635 RKAVQLLERMSRF 647
Score = 34.7 bits (78), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 164 LCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVP 223
L + E N+ + +GAV +++ V+ A E A A L +V + + T A+P
Sbjct: 436 LSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATL-FSLSVIDEYKVTIGGMGAIP 494
Query: 224 VMVTMMGQMAGRGKEYAISVL--AVIYGGGDQLVVAA 258
+V ++G+ + RGK+ A + L IY G + A
Sbjct: 495 ALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRA 531
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 164 LCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVP 223
LC+ + N+ AV AG V ++ ++ E ++ + +L+ L ++ + +G E A A AVP
Sbjct: 508 LCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILAILSSHPDGKSEVGA-ADAVP 566
Query: 224 VMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARA-VELALQGNCTPRGRRK 282
V+V + + R KE + +VL + Q ++ A + +E+A G T RG+RK
Sbjct: 567 VLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIMDLLIEMAENG--TDRGKRK 624
Query: 283 GTQLLKSLKEYG 294
QLL +
Sbjct: 625 AAQLLNRFSRFN 636
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,525,790
Number of Sequences: 539616
Number of extensions: 6767164
Number of successful extensions: 202963
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2231
Number of HSP's successfully gapped in prelim test: 1567
Number of HSP's that attempted gapping in prelim test: 80915
Number of HSP's gapped (non-prelim): 45165
length of query: 308
length of database: 191,569,459
effective HSP length: 117
effective length of query: 191
effective length of database: 128,434,387
effective search space: 24530967917
effective search space used: 24530967917
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)