Query 044095
Match_columns 308
No_of_seqs 198 out of 767
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 11:23:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044095.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044095hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.7 3.3E-17 7.1E-22 184.7 15.9 166 128-296 1283-1475(2102)
2 PLN03200 cellulose synthase-in 99.5 1.1E-13 2.4E-18 156.7 14.3 158 132-291 53-217 (2102)
3 KOG4224 Armadillo repeat prote 99.3 6.6E-12 1.4E-16 122.6 9.1 150 118-270 149-301 (550)
4 PF05804 KAP: Kinesin-associat 99.2 9.6E-11 2.1E-15 123.1 10.7 159 135-297 288-446 (708)
5 KOG4224 Armadillo repeat prote 99.1 2.4E-10 5.3E-15 111.8 10.2 183 121-306 108-294 (550)
6 cd00020 ARM Armadillo/beta-cat 99.1 2.4E-09 5.3E-14 84.6 12.8 116 173-291 2-119 (120)
7 cd00020 ARM Armadillo/beta-cat 99.1 9.3E-10 2E-14 87.0 10.0 113 136-249 6-120 (120)
8 PF05804 KAP: Kinesin-associat 99.0 1.2E-09 2.6E-14 115.0 9.3 153 117-273 312-465 (708)
9 PF04826 Arm_2: Armadillo-like 98.6 5.6E-07 1.2E-11 84.5 11.1 175 116-297 31-210 (254)
10 KOG0166 Karyopherin (importin) 98.5 1E-06 2.2E-11 89.9 10.9 160 135-297 107-271 (514)
11 PF04826 Arm_2: Armadillo-like 98.4 2.3E-06 5E-11 80.4 11.9 153 136-295 11-166 (254)
12 KOG4199 Uncharacterized conser 98.3 9.7E-06 2.1E-10 79.3 11.9 183 117-302 261-454 (461)
13 PF05536 Neurochondrin: Neuroc 98.2 1.2E-05 2.7E-10 82.8 13.0 152 139-294 52-212 (543)
14 KOG0166 Karyopherin (importin) 98.2 1.2E-05 2.6E-10 82.1 10.7 172 116-293 213-394 (514)
15 KOG4199 Uncharacterized conser 97.9 0.00017 3.7E-09 70.8 12.6 157 137-294 241-405 (461)
16 COG5064 SRP1 Karyopherin (impo 97.9 3.4E-05 7.4E-10 75.8 7.6 132 169-300 105-238 (526)
17 KOG1048 Neural adherens juncti 97.8 3.7E-05 8E-10 81.1 6.5 160 134-295 272-455 (717)
18 COG5064 SRP1 Karyopherin (impo 97.8 8E-05 1.7E-09 73.2 8.2 115 136-251 113-232 (526)
19 PF00514 Arm: Armadillo/beta-c 97.7 3.5E-05 7.7E-10 52.1 3.7 40 168-207 2-41 (41)
20 KOG1048 Neural adherens juncti 97.7 0.00014 2.9E-09 76.9 8.3 92 159-251 255-351 (717)
21 KOG0168 Putative ubiquitin fus 97.5 0.00054 1.2E-08 73.4 10.5 112 137-251 211-325 (1051)
22 PF00514 Arm: Armadillo/beta-c 97.5 0.00023 5.1E-09 48.1 5.3 41 208-249 1-41 (41)
23 PF10508 Proteasom_PSMB: Prote 97.4 0.0018 4E-08 66.1 12.5 123 171-295 112-234 (503)
24 PF03224 V-ATPase_H_N: V-ATPas 97.3 0.002 4.3E-08 61.5 10.5 171 115-286 122-308 (312)
25 KOG4646 Uncharacterized conser 97.2 0.0033 7.1E-08 55.1 9.5 129 159-290 36-168 (173)
26 KOG1222 Kinesin associated pro 97.1 0.0017 3.7E-08 66.5 8.5 108 163-273 330-437 (791)
27 smart00185 ARM Armadillo/beta- 97.1 0.0012 2.6E-08 43.4 4.7 40 168-207 2-41 (41)
28 KOG1222 Kinesin associated pro 97.1 0.0014 3.1E-08 67.0 7.4 129 122-254 331-460 (791)
29 KOG2122 Beta-catenin-binding p 97.0 0.0026 5.6E-08 71.5 8.6 135 116-251 459-603 (2195)
30 PF05536 Neurochondrin: Neuroc 96.9 0.013 2.8E-07 60.7 13.1 154 136-295 4-171 (543)
31 KOG2160 Armadillo/beta-catenin 96.8 0.028 6E-07 55.3 13.8 132 163-295 109-243 (342)
32 smart00185 ARM Armadillo/beta- 96.6 0.0072 1.6E-07 39.6 5.3 40 209-249 2-41 (41)
33 KOG2122 Beta-catenin-binding p 96.4 0.02 4.3E-07 64.8 10.6 141 164-306 325-482 (2195)
34 PF03224 V-ATPase_H_N: V-ATPas 96.4 0.018 4E-07 54.9 9.3 155 138-295 106-272 (312)
35 KOG1924 RhoA GTPase effector D 96.1 0.016 3.6E-07 62.0 7.7 16 173-188 728-743 (1102)
36 cd00256 VATPase_H VATPase_H, r 96.1 0.12 2.7E-06 52.3 13.5 136 159-295 166-311 (429)
37 PF10508 Proteasom_PSMB: Prote 95.9 0.081 1.8E-06 54.2 11.7 135 136-272 118-254 (503)
38 PF13646 HEAT_2: HEAT repeats; 95.7 0.026 5.7E-07 42.7 5.4 85 139-244 1-87 (88)
39 PF06371 Drf_GBD: Diaphanous G 95.3 0.073 1.6E-06 46.2 7.4 109 136-249 65-187 (187)
40 PRK09687 putative lyase; Provi 95.2 0.18 3.9E-06 47.9 10.6 86 179-288 193-278 (280)
41 KOG2160 Armadillo/beta-catenin 95.0 0.45 9.7E-06 47.0 12.8 157 136-295 123-286 (342)
42 PF11841 DUF3361: Domain of un 94.7 0.46 1E-05 42.2 10.9 115 137-252 11-134 (160)
43 KOG4646 Uncharacterized conser 94.2 0.058 1.3E-06 47.4 3.9 110 117-231 36-148 (173)
44 KOG0946 ER-Golgi vesicle-tethe 93.8 0.38 8.2E-06 52.0 9.8 118 135-252 120-244 (970)
45 KOG1293 Proteins containing ar 93.4 0.75 1.6E-05 48.8 11.0 117 177-294 418-535 (678)
46 PRK09687 putative lyase; Provi 93.3 0.45 9.8E-06 45.3 8.6 27 221-247 160-186 (280)
47 PF13646 HEAT_2: HEAT repeats; 93.3 0.26 5.7E-06 37.1 5.8 86 180-287 1-87 (88)
48 KOG0946 ER-Golgi vesicle-tethe 92.8 1 2.2E-05 48.9 11.1 155 137-291 61-240 (970)
49 KOG2734 Uncharacterized conser 92.6 1 2.3E-05 46.1 10.3 142 163-307 110-271 (536)
50 PF12031 DUF3518: Domain of un 91.7 0.3 6.4E-06 46.3 5.1 80 194-273 140-228 (257)
51 PF04063 DUF383: Domain of unk 91.6 1.3 2.7E-05 40.3 8.9 78 176-253 50-136 (192)
52 KOG0168 Putative ubiquitin fus 91.3 1.5 3.1E-05 48.1 10.2 122 168-295 201-326 (1051)
53 KOG1293 Proteins containing ar 91.2 2.8 6.2E-05 44.6 12.1 114 135-252 417-536 (678)
54 KOG4500 Rho/Rac GTPase guanine 90.9 1 2.2E-05 46.3 8.2 91 174-265 83-181 (604)
55 PF13513 HEAT_EZ: HEAT-like re 90.4 0.59 1.3E-05 32.9 4.5 53 194-247 3-55 (55)
56 KOG3036 Protein involved in ce 90.2 3.6 7.7E-05 39.5 10.7 129 159-292 147-291 (293)
57 PF11841 DUF3361: Domain of un 89.9 5.8 0.00013 35.3 11.3 117 173-292 6-131 (160)
58 cd00256 VATPase_H VATPase_H, r 89.8 5.4 0.00012 40.6 12.4 101 191-294 157-260 (429)
59 PRK13800 putative oxidoreducta 89.5 7.6 0.00016 42.7 14.2 60 137-206 621-680 (897)
60 PF12348 CLASP_N: CLASP N term 89.4 3.4 7.5E-05 36.9 9.7 110 178-295 94-209 (228)
61 PF09759 Atx10homo_assoc: Spin 87.6 1.9 4.1E-05 35.6 6.2 59 159-217 8-70 (102)
62 TIGR02270 conserved hypothetic 86.4 12 0.00026 37.8 12.4 28 221-248 148-175 (410)
63 KOG2171 Karyopherin (importin) 86.3 5.8 0.00013 44.5 10.8 136 158-295 366-507 (1075)
64 PRK13800 putative oxidoreducta 86.0 6.1 0.00013 43.4 10.9 58 180-247 777-834 (897)
65 PF08045 CDC14: Cell division 86.0 5.6 0.00012 37.9 9.3 91 159-250 113-208 (257)
66 PF13764 E3_UbLigase_R4: E3 ub 85.9 6.2 0.00013 43.2 10.7 132 115-254 102-263 (802)
67 PF14664 RICTOR_N: Rapamycin-i 84.7 6.9 0.00015 38.9 9.6 122 164-291 52-176 (371)
68 KOG2973 Uncharacterized conser 84.3 14 0.00031 36.5 11.3 114 137-253 44-165 (353)
69 PF14664 RICTOR_N: Rapamycin-i 83.8 15 0.00032 36.6 11.6 116 175-295 105-230 (371)
70 PF09759 Atx10homo_assoc: Spin 83.0 4.7 0.0001 33.3 6.4 58 195-253 3-63 (102)
71 PF04063 DUF383: Domain of unk 82.5 5.6 0.00012 36.1 7.4 105 187-293 4-133 (192)
72 KOG3036 Protein involved in ce 82.4 33 0.00071 33.1 12.6 102 151-252 92-200 (293)
73 KOG1789 Endocytosis protein RM 82.3 16 0.00034 41.8 11.7 110 137-249 1771-1883(2235)
74 PF12031 DUF3518: Domain of un 80.9 3.6 7.8E-05 39.2 5.6 74 159-232 146-228 (257)
75 KOG1789 Endocytosis protein RM 80.1 18 0.00039 41.4 11.2 114 177-294 1770-1885(2235)
76 KOG1242 Protein containing ada 79.3 24 0.00051 37.4 11.5 151 137-297 254-406 (569)
77 PF13513 HEAT_EZ: HEAT-like re 79.0 2.9 6.3E-05 29.2 3.5 45 161-205 11-55 (55)
78 KOG2973 Uncharacterized conser 78.9 14 0.00031 36.4 9.2 72 177-253 43-115 (353)
79 PF11698 V-ATPase_H_C: V-ATPas 78.8 10 0.00022 32.2 7.2 79 163-247 33-113 (119)
80 TIGR02270 conserved hypothetic 78.4 29 0.00062 35.1 11.6 58 179-247 148-205 (410)
81 KOG2611 Neurochondrin/leucine- 77.9 23 0.00049 37.2 10.6 106 140-248 59-181 (698)
82 PF12348 CLASP_N: CLASP N term 77.5 4.7 0.0001 36.0 5.2 74 180-253 133-210 (228)
83 PF02985 HEAT: HEAT repeat; I 76.8 5.5 0.00012 25.1 4.0 29 222-250 2-30 (31)
84 KOG2734 Uncharacterized conser 76.8 44 0.00095 34.7 12.2 178 115-293 89-304 (536)
85 PF10165 Ric8: Guanine nucleot 76.6 19 0.00041 36.6 9.8 91 160-251 4-110 (446)
86 PF02985 HEAT: HEAT repeat; I 76.0 5.3 0.00012 25.2 3.7 28 180-207 2-29 (31)
87 PF12755 Vac14_Fab1_bd: Vacuol 74.6 7.5 0.00016 31.4 5.1 68 220-290 27-95 (97)
88 KOG4500 Rho/Rac GTPase guanine 73.9 57 0.0012 34.0 12.1 98 164-263 300-403 (604)
89 PF05308 Mito_fiss_reg: Mitoch 71.8 6.2 0.00014 37.5 4.7 8 14-21 149-156 (253)
90 KOG2259 Uncharacterized conser 71.8 7.9 0.00017 41.7 5.8 75 171-250 366-440 (823)
91 KOG3678 SARM protein (with ste 71.6 22 0.00048 37.3 8.8 87 165-253 209-297 (832)
92 KOG1830 Wiskott Aldrich syndro 71.5 24 0.00051 36.2 8.8 10 28-37 299-308 (518)
93 PF05004 IFRD: Interferon-rela 71.1 47 0.001 32.1 10.7 110 183-292 48-160 (309)
94 KOG1077 Vesicle coat complex A 70.7 27 0.00059 38.1 9.4 87 158-251 307-400 (938)
95 PF05308 Mito_fiss_reg: Mitoch 70.4 8.7 0.00019 36.5 5.3 10 14-23 154-163 (253)
96 PHA03247 large tegument protei 69.3 24 0.00053 43.4 9.4 10 240-249 3110-3119(3151)
97 PF11701 UNC45-central: Myosin 68.9 15 0.00033 31.9 6.1 126 115-244 22-154 (157)
98 KOG2611 Neurochondrin/leucine- 68.8 77 0.0017 33.5 11.9 93 169-264 47-155 (698)
99 PF01602 Adaptin_N: Adaptin N 68.1 52 0.0011 32.8 10.6 100 179-290 80-179 (526)
100 KOG2171 Karyopherin (importin) 67.1 24 0.00053 39.8 8.5 150 137-295 844-1001(1075)
101 PTZ00429 beta-adaptin; Provisi 66.9 40 0.00086 36.8 10.0 70 180-252 142-211 (746)
102 COG1413 FOG: HEAT repeat [Ener 66.7 1.2E+02 0.0025 28.7 12.7 33 219-251 179-211 (335)
103 PF08167 RIX1: rRNA processing 65.7 66 0.0014 28.0 9.6 110 181-291 28-142 (165)
104 PF14668 RICTOR_V: Rapamycin-i 64.9 26 0.00057 27.1 6.1 55 163-217 13-68 (73)
105 KOG2759 Vacuolar H+-ATPase V1 63.5 1.4E+02 0.003 30.7 12.4 149 141-290 160-319 (442)
106 PF08324 PUL: PUL domain; Int 61.5 1.2E+02 0.0027 27.8 11.1 135 114-249 36-186 (268)
107 PF10165 Ric8: Guanine nucleot 61.2 88 0.0019 31.8 10.8 73 159-231 51-133 (446)
108 KOG2675 Adenylate cyclase-asso 60.7 11 0.00025 38.5 4.2 9 40-48 226-234 (480)
109 KOG4413 26S proteasome regulat 60.4 50 0.0011 33.4 8.5 132 118-252 197-336 (524)
110 COG1413 FOG: HEAT repeat [Ener 60.1 66 0.0014 30.3 9.2 27 221-247 106-133 (335)
111 KOG0213 Splicing factor 3b, su 60.1 23 0.0005 39.0 6.5 67 220-290 883-952 (1172)
112 KOG1945 Protein phosphatase 1 60.0 13 0.00028 37.2 4.4 78 45-139 40-117 (377)
113 KOG2675 Adenylate cyclase-asso 59.0 15 0.00032 37.7 4.7 54 86-149 220-274 (480)
114 KOG2259 Uncharacterized conser 54.6 21 0.00045 38.6 5.1 66 179-251 411-476 (823)
115 PTZ00429 beta-adaptin; Provisi 53.0 40 0.00086 36.8 7.1 83 159-243 160-242 (746)
116 KOG1788 Uncharacterized conser 52.6 33 0.00071 39.5 6.3 82 170-251 900-984 (2799)
117 PF08045 CDC14: Cell division 52.4 1.4E+02 0.003 28.6 9.9 98 194-292 107-207 (257)
118 PF05004 IFRD: Interferon-rela 51.9 60 0.0013 31.4 7.5 66 180-247 88-158 (309)
119 PF00790 VHS: VHS domain; Int 51.1 1.5E+02 0.0033 25.0 11.1 96 196-297 24-123 (140)
120 cd03568 VHS_STAM VHS domain fa 49.8 83 0.0018 27.1 7.4 71 178-249 37-110 (144)
121 PF01602 Adaptin_N: Adaptin N 49.1 2.1E+02 0.0044 28.6 11.1 104 177-292 230-333 (526)
122 cd03569 VHS_Hrs_Vps27p VHS dom 48.6 82 0.0018 27.0 7.1 71 178-249 41-114 (142)
123 KOG2956 CLIP-associating prote 48.0 1.8E+02 0.0039 30.5 10.4 15 177-191 305-319 (516)
124 cd03561 VHS VHS domain family; 47.5 1E+02 0.0023 25.8 7.5 76 221-296 38-116 (133)
125 KOG2759 Vacuolar H+-ATPase V1 47.4 2.2E+02 0.0047 29.4 10.8 129 178-307 65-201 (442)
126 PF06025 DUF913: Domain of Unk 46.5 60 0.0013 32.4 6.8 65 166-231 139-207 (379)
127 cd03569 VHS_Hrs_Vps27p VHS dom 45.8 1.1E+02 0.0023 26.3 7.4 77 220-297 41-119 (142)
128 cd03561 VHS VHS domain family; 45.6 1.3E+02 0.0029 25.1 7.9 70 179-249 38-112 (133)
129 KOG1248 Uncharacterized conser 44.5 1.8E+02 0.0039 33.5 10.5 169 113-291 588-766 (1176)
130 cd03567 VHS_GGA VHS domain fam 44.3 1.1E+02 0.0023 26.4 7.1 70 179-249 39-116 (139)
131 PF14631 FancD2: Fanconi anaem 43.8 60 0.0013 38.1 7.0 71 179-251 474-544 (1426)
132 COG5181 HSH155 U2 snRNP splice 43.4 57 0.0012 35.4 6.2 148 139-292 606-759 (975)
133 COG5096 Vesicle coat complex, 43.0 44 0.00096 36.6 5.5 69 137-207 127-195 (757)
134 cd03568 VHS_STAM VHS domain fa 42.6 1.3E+02 0.0029 25.9 7.5 75 221-296 38-114 (144)
135 KOG1248 Uncharacterized conser 41.4 2.1E+02 0.0046 33.0 10.4 71 221-293 828-899 (1176)
136 KOG0212 Uncharacterized conser 40.8 2.3E+02 0.005 30.5 10.1 125 161-291 319-443 (675)
137 PF04078 Rcd1: Cell differenti 40.2 2.5E+02 0.0053 27.1 9.5 93 159-252 72-171 (262)
138 KOG0119 Splicing factor 1/bran 39.8 1.2E+02 0.0027 31.8 7.8 6 78-83 499-504 (554)
139 PF14726 RTTN_N: Rotatin, an a 39.4 1.5E+02 0.0032 24.3 6.8 66 178-244 30-95 (98)
140 smart00288 VHS Domain present 39.4 1.5E+02 0.0033 24.9 7.3 70 179-249 38-111 (133)
141 COG5098 Chromosome condensatio 39.2 1.7E+02 0.0037 32.5 8.9 67 221-290 347-413 (1128)
142 PF12717 Cnd1: non-SMC mitotic 38.0 2.7E+02 0.0059 24.2 10.2 88 194-293 4-93 (178)
143 PF04834 Adeno_E3_14_5: Early 37.8 30 0.00064 28.5 2.5 8 15-22 33-40 (97)
144 PF11701 UNC45-central: Myosin 37.8 1.9E+02 0.0041 25.0 7.8 87 197-284 62-151 (157)
145 PF01690 PLRV_ORF5: Potato lea 37.7 26 0.00056 36.2 2.6 7 118-124 136-142 (465)
146 PF13764 E3_UbLigase_R4: E3 ub 37.4 83 0.0018 34.8 6.6 57 174-231 113-174 (802)
147 KOG0414 Chromosome condensatio 36.7 1.3E+02 0.0028 34.7 8.0 105 182-292 316-428 (1251)
148 cd00197 VHS_ENTH_ANTH VHS, ENT 36.6 1.1E+02 0.0024 24.6 5.8 71 221-291 38-114 (115)
149 cd03572 ENTH_epsin_related ENT 36.6 1.3E+02 0.0028 25.5 6.4 73 221-293 39-120 (122)
150 KOG2999 Regulator of Rac1, req 36.2 2.4E+02 0.0051 30.4 9.3 176 112-291 41-241 (713)
151 COG5096 Vesicle coat complex, 36.0 3.1E+02 0.0068 30.3 10.5 152 127-292 28-195 (757)
152 PF12783 Sec7_N: Guanine nucle 35.6 1.9E+02 0.0042 24.7 7.5 80 170-251 65-148 (168)
153 PF14663 RasGEF_N_2: Rapamycin 35.4 97 0.0021 25.6 5.3 39 179-217 9-47 (115)
154 KOG4413 26S proteasome regulat 34.9 4E+02 0.0087 27.2 10.2 101 173-273 123-224 (524)
155 COG5209 RCD1 Uncharacterized p 34.6 57 0.0012 31.3 4.2 101 151-252 113-221 (315)
156 PF00790 VHS: VHS domain; Int 34.5 1E+02 0.0022 26.0 5.4 71 178-249 42-118 (140)
157 PF12460 MMS19_C: RNAPII trans 34.3 3.5E+02 0.0077 26.9 10.1 109 179-292 272-394 (415)
158 PF12331 DUF3636: Protein of u 34.2 68 0.0015 28.3 4.4 60 171-230 73-146 (149)
159 PF05918 API5: Apoptosis inhib 34.0 2.7E+02 0.0059 29.6 9.5 67 179-251 60-127 (556)
160 PF12717 Cnd1: non-SMC mitotic 33.3 1.1E+02 0.0024 26.7 5.7 68 179-250 26-93 (178)
161 KOG0307 Vesicle coat complex C 33.0 2.5E+02 0.0054 32.1 9.3 23 76-98 847-869 (1049)
162 PF04078 Rcd1: Cell differenti 32.9 2.4E+02 0.0051 27.2 8.1 116 170-290 131-260 (262)
163 PF11698 V-ATPase_H_C: V-ATPas 31.8 83 0.0018 26.7 4.4 67 135-207 41-115 (119)
164 PF12238 MSA-2c: Merozoite sur 31.6 1.1E+02 0.0024 28.4 5.5 6 73-78 194-199 (205)
165 PF06371 Drf_GBD: Diaphanous G 31.1 36 0.00079 29.2 2.2 109 178-291 66-186 (187)
166 KOG1242 Protein containing ada 31.1 1.4E+02 0.0031 31.7 6.8 61 192-253 268-328 (569)
167 cd03567 VHS_GGA VHS domain fam 30.9 1.7E+02 0.0036 25.2 6.2 74 221-294 39-118 (139)
168 KOG0162 Myosin class I heavy c 30.2 1.7E+02 0.0037 32.4 7.3 7 124-130 1067-1073(1106)
169 COG5098 Chromosome condensatio 30.2 97 0.0021 34.2 5.5 103 140-248 302-414 (1128)
170 KOG2956 CLIP-associating prote 29.7 1.2E+02 0.0026 31.7 5.9 127 114-247 257-402 (516)
171 PF12755 Vac14_Fab1_bd: Vacuol 29.2 2.5E+02 0.0055 22.5 6.7 68 177-247 26-94 (97)
172 PF11467 LEDGF: Lens epitheliu 29.2 1.2E+02 0.0026 25.1 4.9 52 193-245 20-73 (106)
173 KOG1517 Guanine nucleotide bin 29.1 1.4E+02 0.0031 34.3 6.6 80 168-247 632-730 (1387)
174 PF01365 RYDR_ITPR: RIH domain 28.6 3E+02 0.0065 24.4 7.8 120 170-297 34-174 (207)
175 PF12460 MMS19_C: RNAPII trans 28.6 1.9E+02 0.0041 28.8 7.0 75 178-252 323-397 (415)
176 KOG1061 Vesicle coat complex A 28.3 1.7E+02 0.0036 32.1 6.9 69 138-209 122-191 (734)
177 cd03562 CID CID (CTD-Interacti 28.2 1.4E+02 0.003 23.9 5.1 70 220-290 37-106 (114)
178 PF05918 API5: Apoptosis inhib 27.7 1E+02 0.0022 32.7 5.1 47 136-190 58-108 (556)
179 KOG1830 Wiskott Aldrich syndro 27.4 3.8E+02 0.0083 27.8 8.8 6 87-92 388-393 (518)
180 KOG3671 Actin regulatory prote 27.0 1.9E+02 0.0041 30.5 6.7 62 31-109 408-469 (569)
181 KOG1241 Karyopherin (importin) 26.4 6.4E+02 0.014 28.1 10.8 158 136-300 318-486 (859)
182 smart00288 VHS Domain present 26.3 2.9E+02 0.0063 23.2 6.9 74 221-294 38-113 (133)
183 COG5209 RCD1 Uncharacterized p 25.5 6.2E+02 0.014 24.5 9.8 104 159-262 168-283 (315)
184 COG5369 Uncharacterized conser 24.4 3.8E+02 0.0083 28.9 8.4 110 137-249 431-545 (743)
185 KOG0212 Uncharacterized conser 24.3 2E+02 0.0043 30.9 6.4 81 166-250 365-445 (675)
186 COG5369 Uncharacterized conser 23.3 1.6E+02 0.0035 31.6 5.5 118 171-291 424-544 (743)
187 COG5218 YCG1 Chromosome conden 23.1 4.2E+02 0.0091 29.0 8.5 98 178-283 91-190 (885)
188 PF12830 Nipped-B_C: Sister ch 22.9 2E+02 0.0043 25.5 5.5 73 179-252 46-125 (187)
189 PF12397 U3snoRNP10: U3 small 22.9 2.9E+02 0.0063 22.4 6.1 66 180-251 8-76 (121)
190 KOG1820 Microtubule-associated 22.7 1.1E+03 0.024 26.4 13.1 66 177-249 335-400 (815)
191 PLN02396 hexaprenyldihydroxybe 22.3 1.2E+02 0.0026 29.5 4.3 9 284-292 271-279 (322)
192 KOG2999 Regulator of Rac1, req 22.1 9.2E+02 0.02 26.2 10.7 70 179-249 84-157 (713)
193 PF01417 ENTH: ENTH domain; I 21.8 3.1E+02 0.0066 22.5 6.1 93 194-292 19-121 (125)
194 PLN03205 ATR interacting prote 21.1 2.7E+02 0.0058 29.0 6.4 61 234-294 386-448 (652)
195 KOG1517 Guanine nucleotide bin 21.1 6.7E+02 0.015 29.2 9.9 93 158-250 578-672 (1387)
196 KOG1785 Tyrosine kinase negati 20.1 2.7E+02 0.0058 28.8 6.2 10 45-54 479-488 (563)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.73 E-value=3.3e-17 Score=184.69 Aligned_cols=166 Identities=20% Similarity=0.158 Sum_probs=134.1
Q ss_pred ccCCCCcccchHHHHHHHhCCCCCCCCCcH-----H--HH----------------HHHhcC----CCCcHHHHHHhCcH
Q 044095 128 SSGSDSDRLAALYLLERSLLPNPPSDQACQ-----P--EL----------------MRALCL----AESNRRVAVEAGAV 180 (308)
Q Consensus 128 ss~~i~~~~~AI~lLV~LL~~g~~~~k~~a-----~--a~----------------l~aL~~----~~~Nr~~iV~aGAV 180 (308)
+.+..+.+.+++..|++|+++... .+... + .. +..||. +.+||.++|++|+|
T Consensus 1283 ~~~~~~~~~~a~~ALvkL~kd~is-~~a~~~~~~~a~L~~l~~iL~~~~~~~l~~~l~~Lc~~l~~~~~~R~~~v~agaV 1361 (2102)
T PLN03200 1283 NTGSESEQHAAIGALIKLSSGNPS-KALAIADVEGNALENLCKILSSDSSLELKEDAAELCRVLFTNTRIRSTPAAARCI 1361 (2102)
T ss_pred cccchhhhHHHHHHHHHHHcCCCC-hHhHhhcccchhHHHHHHhcccccchhHHHHHHHHhHHhcCChHHHhhHHHhCCH
Confidence 444445556777777777776532 11111 1 11 344563 34889999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCC
Q 044095 181 GAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPP 260 (308)
Q Consensus 181 p~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~ 260 (308)
++||++|.+.....+|.|+++|+.|+.+++||+++.+|+++|+.++ ++.++|....|.||++||.||......+.++++
T Consensus 1362 ~~LIeLL~de~~~~~E~Al~vLd~Lc~~eegre~~~~h~a~vplV~-~ilrvS~~a~E~AV~aL~kl~~~~~~v~~Emv~ 1440 (2102)
T PLN03200 1362 EPLISLLVSESSTAQEAGVCALDRLLDDEQLAELVAAHGAVVPLVG-LVVGTNYVLHEAAISALIKLGKDRPPCKLDMVK 1440 (2102)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHhcCHhhHHHHHHcCChhhHHH-HHHcCCHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 9999999996566699999999999999999999999998888888 777799999999999999999666667778999
Q ss_pred ccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCC
Q 044095 261 EEVARAVELALQGNCTPRGRRKGTQLLKSLKEYGQP 296 (308)
Q Consensus 261 ~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e~ 296 (308)
.|+...+.+++|. |+.+.|+||++|||+|+.+.+.
T Consensus 1441 ~G~~~kllllLQ~-c~~~lkekAaeLLrlL~~~~~~ 1475 (2102)
T PLN03200 1441 AGIIERVLDILPE-APDSLCSAIAELLRILTNNSSI 1475 (2102)
T ss_pred hCHHHHHHHHHHc-CCHHHHHHHHHHHHHhccchhh
Confidence 9998777788888 9999999999999999988764
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=156.66 Aligned_cols=158 Identities=16% Similarity=0.153 Sum_probs=130.5
Q ss_pred CCcccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcC---
Q 044095 132 DSDRLAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTV--- 208 (308)
Q Consensus 132 i~~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~--- 208 (308)
+++..++|+.||.+|..|+...|..+.+++.+|+.+++||..|+..|+|+.||++|.+++.+.+|.|+++|..|+..
T Consensus 53 Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~ 132 (2102)
T PLN03200 53 IGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLS 132 (2102)
T ss_pred HHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcch
Confidence 44557899999999998875566555578889999999999999999999999999999999999999999999987
Q ss_pred hhhHHHHHhccCcHHHHHHHhcCCCHH---HHHHHHHHHHHHhcCCcchhhccCCcc-HHHHHHHHHhCCCCHHHHHHHH
Q 044095 209 AEGAEETRAHALAVPVMVTMMGQMAGR---GKEYAISVLAVIYGGGDQLVVAAPPEE-VARAVELALQGNCTPRGRRKGT 284 (308)
Q Consensus 209 ~eGr~aI~~~~gaIp~LV~lLr~gS~~---~KE~AVa~L~sLC~~~~~~v~~a~~~g-v~~Ll~Lllqg~cS~raKrKA~ 284 (308)
++++..|+..+|+|+.||++|++|+.+ -+++|+.+|.+||.+.+++...+++.| ++.++.++.++ ++..+++|.
T Consensus 133 D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~--d~~lQ~eAa 210 (2102)
T PLN03200 133 DHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG--NSDAQANAA 210 (2102)
T ss_pred hhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC--CHHHHHHHH
Confidence 566767666689999999999998643 347889999999998887765544444 77887777665 899999999
Q ss_pred HHHHHHH
Q 044095 285 QLLKSLK 291 (308)
Q Consensus 285 ~LLklL~ 291 (308)
.+|..+.
T Consensus 211 ~aLa~La 217 (2102)
T PLN03200 211 SLLARLM 217 (2102)
T ss_pred HHHHHHH
Confidence 8764444
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=6.6e-12 Score=122.60 Aligned_cols=150 Identities=18% Similarity=0.106 Sum_probs=126.0
Q ss_pred HHHHHHHhHhccCCCCcccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHH
Q 044095 118 ELFHLAELQLSSGSDSDRLAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGER 197 (308)
Q Consensus 118 ~~f~l~~l~lss~~i~~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ 197 (308)
=|+.|++|+.|++.|.. .||+-+|.+|-+-...+.+..+-.++.++....+||..+|.+|++|+||+++..++.+..++
T Consensus 149 CitnLaT~d~nk~kiA~-sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyy 227 (550)
T KOG4224|consen 149 CITNLATFDSNKVKIAR-SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYY 227 (550)
T ss_pred hhhhhhccccchhhhhh-ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHH
Confidence 47899999999999876 89999999987766655555455777888899999999999999999999999999999999
Q ss_pred HHHHHHHHhcChhhHHHHHhccC--cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCcc-HHHHHHHH
Q 044095 198 ALAALELMCTVAEGAEETRAHAL--AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEE-VARAVELA 270 (308)
Q Consensus 198 ALAiL~~La~~~eGr~aI~~~~g--aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~g-v~~Ll~Ll 270 (308)
+...+.+++.+...|..+.. .+ .|+.||++|++++++.|=.|.-+|-+|+...+..+ ++++.| ++.+++|+
T Consensus 228 cttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~-eiv~ag~lP~lv~Ll 301 (550)
T KOG4224|consen 228 CTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQR-EIVEAGSLPLLVELL 301 (550)
T ss_pred HHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhh-HHHhcCCchHHHHHH
Confidence 99999999999999999987 44 89999999999999999999999999987654333 344444 45554433
No 4
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.18 E-value=9.6e-11 Score=123.15 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=125.5
Q ss_pred ccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHH
Q 044095 135 RLAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEE 214 (308)
Q Consensus 135 ~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~a 214 (308)
+.+.++.||++|..++..-....-..+..|+...+||..|++.|+|+.|+.+|...+.++.+.++.+|.+|+.+.+.|..
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 45899999999987753222112356668999999999999999999999999988889999999999999999999999
Q ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcC
Q 044095 215 TRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKEYG 294 (308)
Q Consensus 215 I~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~ 294 (308)
|.+ .|.||.||.+|.+. ..++.|+.+|++||..++.+...+..++++.++.+++.+. +.+....+..|+-.|....
T Consensus 368 mV~-~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 368 MVS-LGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENS-EEEVQLELIALLINLALNK 443 (708)
T ss_pred HHH-CCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhcCH
Confidence 999 78999999999864 4668899999999998766654455566777777777763 4444444556666666555
Q ss_pred CCC
Q 044095 295 QPD 297 (308)
Q Consensus 295 e~~ 297 (308)
++.
T Consensus 444 rna 446 (708)
T PF05804_consen 444 RNA 446 (708)
T ss_pred HHH
Confidence 443
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.4e-10 Score=111.78 Aligned_cols=183 Identities=18% Similarity=0.142 Sum_probs=144.3
Q ss_pred HHHHhHhccCCCCcc--cchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHH
Q 044095 121 HLAELQLSSGSDSDR--LAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERA 198 (308)
Q Consensus 121 ~l~~l~lss~~i~~~--~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~A 198 (308)
+++.|..|....+-. ...+.+|+.-+..++..-+-.+-..+.+|++.++||.+|.+.|+..+|..|-...+....-.|
T Consensus 108 alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL~pltrLakskdirvqrna 187 (550)
T KOG4224|consen 108 ALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGALEPLTRLAKSKDIRVQRNA 187 (550)
T ss_pred hhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccchhhhHhhcccchhhHHHHH
Confidence 455566665544421 245555555555444323322457788999999999999999999999997666677778889
Q ss_pred HHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCc--cHHHHHHHHHhCCCC
Q 044095 199 LAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPE--EVARAVELALQGNCT 276 (308)
Q Consensus 199 LAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~--gv~~Ll~Lllqg~cS 276 (308)
+.+|.+|-...|+|..+.. +|+++.||.++..+....+++|..++-++....+.+...+..+ -|+.|+.|.-.| +
T Consensus 188 tgaLlnmThs~EnRr~LV~-aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~--s 264 (550)
T KOG4224|consen 188 TGALLNMTHSRENRRVLVH-AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDG--S 264 (550)
T ss_pred HHHHHHhhhhhhhhhhhhc-cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC--C
Confidence 9999999999999999987 8999999999999999999999999999987765544334333 377888777777 9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCccccccCC
Q 044095 277 PRGRRKGTQLLKSLKEYGQPDTTQDEMNGC 306 (308)
Q Consensus 277 ~raKrKA~~LLklL~~~~e~~~~~~~~~g~ 306 (308)
++.|-.|.-.|+.|....++.+++.+-+|.
T Consensus 265 ~kvkcqA~lALrnlasdt~Yq~eiv~ag~l 294 (550)
T KOG4224|consen 265 DKVKCQAGLALRNLASDTEYQREIVEAGSL 294 (550)
T ss_pred hHHHHHHHHHHhhhcccchhhhHHHhcCCc
Confidence 999999999999999999999888887764
No 6
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.09 E-value=2.4e-09 Score=84.58 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=98.0
Q ss_pred HHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcC-hhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044095 173 VAVEAGAVGAVIEVVAELDAAAGERALAALELMCTV-AEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 173 ~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~ 251 (308)
.+++.|.|+.|+++|.+.+....+.++.+|.+|+.. ++++..+.+ .++|+.|+++|.+...+-+++|+.+|.+||.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 478999999999999988889999999999999998 888888887 689999999999999999999999999999877
Q ss_pred cchhhccCCcc-HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 044095 252 DQLVVAAPPEE-VARAVELALQGNCTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 252 ~~~v~~a~~~g-v~~Ll~Lllqg~cS~raKrKA~~LLklL~ 291 (308)
......+...| +..++.++..+ +.+.++.|..+|..|.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 54443445555 45665555444 8899999999998775
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.08 E-value=9.3e-10 Score=87.00 Aligned_cols=113 Identities=20% Similarity=0.166 Sum_probs=96.3
Q ss_pred cchHHHHHHHhCCCCCCCCCcHHHHHHHhcCC-CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChh-hHH
Q 044095 136 LAALYLLERSLLPNPPSDQACQPELMRALCLA-ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAE-GAE 213 (308)
Q Consensus 136 ~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~-~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~e-Gr~ 213 (308)
.+.|+.|+++|..++...+..+-.++.+++.. ++++..+++.|+++.|+++|.+.+...++.|+.+|.+|+...+ .+.
T Consensus 6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 47899999999988744443334567788876 8899999999999999999999889999999999999999764 455
Q ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044095 214 ETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 214 aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~ 249 (308)
.+.. .|+++.|+++|.+.+.+.+++|..+|.+||.
T Consensus 86 ~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 86 IVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 5555 7899999999999999999999999999983
No 8
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.99 E-value=1.2e-09 Score=115.01 Aligned_cols=153 Identities=14% Similarity=0.077 Sum_probs=116.3
Q ss_pred HHHHHHHHhHhccCCCCcccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHH
Q 044095 117 QELFHLAELQLSSGSDSDRLAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGE 196 (308)
Q Consensus 117 ~~~f~l~~l~lss~~i~~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E 196 (308)
.-|-.|+-+.-|+..+.+ .++|+.|++++..++..-...+-.+|.||+.+.++|..||+.|.||.|+++|.+ +...+
T Consensus 312 ~fLkkLSi~~ENK~~m~~-~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d--~~~~~ 388 (708)
T PF05804_consen 312 TFLKKLSIFKENKDEMAE-SGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD--PNFRE 388 (708)
T ss_pred HHHHHHcCCHHHHHHHHH-cCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC--CchHH
Confidence 334456666667776665 689999999998776433322336777999999999999999999999999976 45667
Q ss_pred HHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhC
Q 044095 197 RALAALELMCTVAEGAEETRAHALAVPVMVTMMGQM-AGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQG 273 (308)
Q Consensus 197 ~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~g-S~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg 273 (308)
.++++|.+||..+++|..+.. .++|+.|+++|.++ ..+....+++++.+|+.+.++.-.+...+|...|+......
T Consensus 389 val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~ 465 (708)
T PF05804_consen 389 VALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT 465 (708)
T ss_pred HHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc
Confidence 799999999999999999977 56999999998876 44445568899999998876543333344566666555543
No 9
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.56 E-value=5.6e-07 Score=84.52 Aligned_cols=175 Identities=11% Similarity=0.088 Sum_probs=127.5
Q ss_pred hHHHHHHHHhHhccC---CCCcccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhc--c
Q 044095 116 LQELFHLAELQLSSG---SDSDRLAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAE--L 190 (308)
Q Consensus 116 ~~~~f~l~~l~lss~---~i~~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~--~ 190 (308)
.+++++++...-... .| ...|+|++++.+|....+..+..+-.++.+|+...+|+..|-. .|..+++.+.+ .
T Consensus 31 e~al~al~n~aaf~~nq~~I-r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~--~i~~Vc~~~~s~~l 107 (254)
T PF04826_consen 31 EKALIALGNSAAFPFNQDII-RDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKM--YIPQVCEETVSSPL 107 (254)
T ss_pred HHHHHHHHhhccChhHHHHH-HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHH--HHHHHHHHHhcCCC
Confidence 345566665433222 23 3379999999999998766664344677799999999998743 57777776653 2
Q ss_pred ChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHH
Q 044095 191 DAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELA 270 (308)
Q Consensus 191 s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Ll 270 (308)
+....-.++.+|.+|+..++....+.. .|+.++++|..|+...|.+++.+|++|+.+..........++...++ .+
T Consensus 108 ns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~-~L 183 (254)
T PF04826_consen 108 NSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFL-SL 183 (254)
T ss_pred CCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHH-HH
Confidence 566677899999999999999888865 69999999999999999999999999998765433223334445665 34
Q ss_pred HhCCCCHHHHHHHHHHHHHHHhcCCCC
Q 044095 271 LQGNCTPRGRRKGTQLLKSLKEYGQPD 297 (308)
Q Consensus 271 lqg~cS~raKrKA~~LLklL~~~~e~~ 297 (308)
.+.+.+...-.++..+.+.+.++.+.+
T Consensus 184 f~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 184 FNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 455435566788888888887776644
No 10
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=1e-06 Score=89.86 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=123.1
Q ss_pred ccchHHHHHHHhCCCC-CCCCCcHHHHHHHhcCC-CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcC-hhh
Q 044095 135 RLAALYLLERSLLPNP-PSDQACQPELMRALCLA-ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTV-AEG 211 (308)
Q Consensus 135 ~~~AI~lLV~LL~~g~-~~~k~~a~a~l~aL~~~-~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~eG 211 (308)
+.|+|+.||+.|..+. +.-+..++-++.+++.. .++-..+|++||||.++.||.+.+.++.|.|+=+|++++.+ +.-
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~ 186 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC 186 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence 3489999999998554 44565556677788865 46667789999999999999999999999999999999996 577
Q ss_pred HHHHHhccCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCcch-hhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 044095 212 AEETRAHALAVPVMVTMMGQMA-GRGKEYAISVLAVIYGGGDQL-VVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKS 289 (308)
Q Consensus 212 r~aI~~~~gaIp~LV~lLr~gS-~~~KE~AVa~L~sLC~~~~~~-v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLkl 289 (308)
|.-+.. .|++..|+.+|.... ..-..+++.+|.+||++..-- -.+.+....+.|..|+..- .+.....|...|..
T Consensus 187 Rd~vl~-~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 187 RDYVLS-CGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSY 263 (514)
T ss_pred HHHHHh-hcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Confidence 888877 679999999999864 478889999999999987411 1112233344554444444 67788999999999
Q ss_pred HHhcCCCC
Q 044095 290 LKEYGQPD 297 (308)
Q Consensus 290 L~~~~e~~ 297 (308)
|.+.....
T Consensus 264 Lsdg~ne~ 271 (514)
T KOG0166|consen 264 LTDGSNEK 271 (514)
T ss_pred HhcCChHH
Confidence 98766543
No 11
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.43 E-value=2.3e-06 Score=80.38 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=121.5
Q ss_pred cchHHHHHHHhCCCCC-CCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHH
Q 044095 136 LAALYLLERSLLPNPP-SDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEE 214 (308)
Q Consensus 136 ~~AI~lLV~LL~~g~~-~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~a 214 (308)
.+.+.-|+.+|+...+ ..+..+-.++.+.+.+..|+..|-+.|+|+.+..+|.+.+....++|+.+|.+|+...|++..
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~ 90 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQ 90 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHH
Confidence 4678999999985542 223223366778888899999999999999999999999999999999999999999999999
Q ss_pred HHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 044095 215 TRAHALAVPVMVTMMGQM--AGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 215 I~~~~gaIp~LV~lLr~g--S~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~ 292 (308)
|.. .|.-+++.+... ....+..++.+|.+|+..++.. ..+...++.++.|+..| +..+|..+..+|-.|..
T Consensus 91 Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l~~~i~~ll~LL~~G--~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 91 IKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HMLANYIPDLLSLLSSG--SEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhHHhhHHHHHHHHHcC--ChHHHHHHHHHHHHhcc
Confidence 855 578888876653 3456678999999998765432 23455688888888888 88999999888888877
Q ss_pred cCC
Q 044095 293 YGQ 295 (308)
Q Consensus 293 ~~e 295 (308)
+..
T Consensus 164 np~ 166 (254)
T PF04826_consen 164 NPD 166 (254)
T ss_pred CHH
Confidence 654
No 12
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=9.7e-06 Score=79.33 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=132.6
Q ss_pred HHHHHHHHhHhccCCCC--cccchHHHHHHHhCCCCCCCCC-cHH---HHHHHhcCCCCcHHHHHHhCcHHHHHHHHh--
Q 044095 117 QELFHLAELQLSSGSDS--DRLAALYLLERSLLPNPPSDQA-CQP---ELMRALCLAESNRRVAVEAGAVGAVIEVVA-- 188 (308)
Q Consensus 117 ~~~f~l~~l~lss~~i~--~~~~AI~lLV~LL~~g~~~~k~-~a~---a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~-- 188 (308)
....+|++|..+...+. ...|.|..|++++..-+..+.. .++ .++++|+-.+.||..||+.|..+.++.++.
T Consensus 261 ~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h 340 (461)
T KOG4199|consen 261 SLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH 340 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc
Confidence 34567888888776533 2268999999999874433332 222 577799999999999999999999999984
Q ss_pred ccChhHHHHHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCcchhhccCCccHHH
Q 044095 189 ELDAAAGERALAALELMCT-VAEGAEETRAHALAVPVMVTMMGQM--AGRGKEYAISVLAVIYGGGDQLVVAAPPEEVAR 265 (308)
Q Consensus 189 ~~s~~~~E~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~lLr~g--S~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~ 265 (308)
..++..++.+++++..|+- .+|..+.+.+ .|+-...|+.|+.- -..-+.+|...+-+|...+.+.....+..|+..
T Consensus 341 ~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~ 419 (461)
T KOG4199|consen 341 SDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEK 419 (461)
T ss_pred CCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHH
Confidence 4578899999999999997 5787777777 56667889999973 566778899999999877766565678899988
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCCcccc
Q 044095 266 AVELALQGNCTPRGRRKGTQLLKSLKEYGQPDTTQDE 302 (308)
Q Consensus 266 Ll~Lllqg~cS~raKrKA~~LLklL~~~~e~~~~~~~ 302 (308)
|+...+...-+.+ .-|...|+-|-=.-.++.+|-.
T Consensus 420 Li~~A~~~h~tce--~~akaALRDLGc~v~lre~wtg 454 (461)
T KOG4199|consen 420 LIRTAKANHETCE--AAAKAALRDLGCDVYLREEWTG 454 (461)
T ss_pred HHHHHHhcCccHH--HHHHHHHHhcCcchhhHHHhcc
Confidence 8766665522333 3344555544333344445543
No 13
>PF05536 Neurochondrin: Neurochondrin
Probab=98.24 E-value=1.2e-05 Score=82.81 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=105.8
Q ss_pred HHHHHHHhCCCCCCCCCc-------HHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccCh-hHHHHHHHHHHHHhcChh
Q 044095 139 LYLLERSLLPNPPSDQAC-------QPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDA-AAGERALAALELMCTVAE 210 (308)
Q Consensus 139 I~lLV~LL~~g~~~~k~~-------a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~-~~~E~ALAiL~~La~~~e 210 (308)
...|-+||+.+....... +-++++++|..++-...=--.+-||.|++++...+. .++++|+.+|..++.+++
T Consensus 52 ~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~ 131 (543)
T PF05536_consen 52 FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPE 131 (543)
T ss_pred hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcH
Confidence 377889999876333212 225667888876654333334679999999987777 999999999999999999
Q ss_pred hHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHH-HHHhCCCCHHHHHHHHHHHHH
Q 044095 211 GAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVE-LALQGNCTPRGRRKGTQLLKS 289 (308)
Q Consensus 211 Gr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~-Lllqg~cS~raKrKA~~LLkl 289 (308)
|+.++.+ .|+|+.|++++.+ ....+|.|+.+|.+++...+.+.......++..++. +..+. +....+.+.++|++
T Consensus 132 G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~f--s~~~~~~kfell~~ 207 (543)
T PF05536_consen 132 GAKALLE-SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDF--SSFHGEDKFELLEF 207 (543)
T ss_pred hHHHHHh-cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHH--HhhccchHHHHHHH
Confidence 9999999 6899999999998 677899999999999886543221111222222211 11222 33444566677777
Q ss_pred HHhcC
Q 044095 290 LKEYG 294 (308)
Q Consensus 290 L~~~~ 294 (308)
|...-
T Consensus 208 L~~~L 212 (543)
T PF05536_consen 208 LSAFL 212 (543)
T ss_pred HHHhc
Confidence 76543
No 14
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=1.2e-05 Score=82.15 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=126.4
Q ss_pred hHHHHHHHHhHhccCCC---CcccchHHHHHHHhCCCCCCCCCcHHHHHHH---hcC-CCCcHHHHHHhCcHHHHHHHHh
Q 044095 116 LQELFHLAELQLSSGSD---SDRLAALYLLERSLLPNPPSDQACQPELMRA---LCL-AESNRRVAVEAGAVGAVIEVVA 188 (308)
Q Consensus 116 ~~~~f~l~~l~lss~~i---~~~~~AI~lLV~LL~~g~~~~k~~a~a~l~a---L~~-~~~Nr~~iV~aGAVp~LVeLL~ 188 (308)
-+..|+|+.|--.|..- .....+++.|+.||........ .++.++ |+- ..+--..++++|.|+.||++|.
T Consensus 213 Rn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl---~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~ 289 (514)
T KOG0166|consen 213 RNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVL---TDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG 289 (514)
T ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHH---HHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHc
Confidence 35677777776666521 2334689999999886542222 344444 442 2455678899999999999999
Q ss_pred ccChhHHHHHHHHHHHHhcChhh-HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCcchhhccCCccH-HH
Q 044095 189 ELDAAAGERALAALELMCTVAEG-AEETRAHALAVPVMVTMMGQM-AGRGKEYAISVLAVIYGGGDQLVVAAPPEEV-AR 265 (308)
Q Consensus 189 ~~s~~~~E~ALAiL~~La~~~eG-r~aI~~~~gaIp~LV~lLr~g-S~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv-~~ 265 (308)
..+..+.--||..+.++++..|- ..+|.+ .|+++.|..+|... ...-|+.|..++.+|+-+..+.+..++..|+ +.
T Consensus 290 ~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~-~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~ 368 (514)
T KOG0166|consen 290 HSSPKVVTPALRAIGNIVTGSDEQTQVVIN-SGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPV 368 (514)
T ss_pred CCCcccccHHHhhccceeeccHHHHHHHHh-cChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHH
Confidence 87777778899999999886544 455556 78999999999964 5668899999999999877666666777785 67
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHhc
Q 044095 266 AVELALQGNCTPRGRRKGTQLLKSLKEY 293 (308)
Q Consensus 266 Ll~Lllqg~cS~raKrKA~~LLklL~~~ 293 (308)
|+.++..+ .-+.|+.|+..+..+...
T Consensus 369 Li~~l~~~--ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 369 LINLLQTA--EFDIRKEAAWAISNLTSS 394 (514)
T ss_pred HHHHHhcc--chHHHHHHHHHHHhhccc
Confidence 77777777 688999998777665543
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00017 Score=70.77 Aligned_cols=157 Identities=10% Similarity=0.135 Sum_probs=115.9
Q ss_pred chHHHHHHHhCCCCCCCCCc-HHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhcc----ChhHHHHHHHHHHHHhcChhh
Q 044095 137 AALYLLERSLLPNPPSDQAC-QPELMRALCLAESNRRVAVEAGAVGAVIEVVAEL----DAAAGERALAALELMCTVAEG 211 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~-a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~----s~~~~E~ALAiL~~La~~~eG 211 (308)
+.+..|++.|..+-+.+--. .-.++..|+..++-+..|+++|.+..|++++.|. ...+...++.+|..|+..++.
T Consensus 241 ~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Dsv 320 (461)
T KOG4199|consen 241 GILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSV 320 (461)
T ss_pred hhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCch
Confidence 45777888888765433211 1245557888889999999999999999999863 345677899999999999999
Q ss_pred HHHHHhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 044095 212 AEETRAHALAVPVMVTMMGQ--MAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGN-CTPRGRRKGTQLLK 288 (308)
Q Consensus 212 r~aI~~~~gaIp~LV~lLr~--gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~-cS~raKrKA~~LLk 288 (308)
+..|.+ .|+.+.++.++.+ .++.--+.+.+++..||....+.-..+++.|+..+....+..- --...+|.|..+++
T Consensus 321 Ks~IV~-~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IR 399 (461)
T KOG4199|consen 321 KSTIVE-KGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIR 399 (461)
T ss_pred HHHHHH-hcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 999999 6788999998876 4778888889999999986655444567777654333333221 13445688888888
Q ss_pred HHHhcC
Q 044095 289 SLKEYG 294 (308)
Q Consensus 289 lL~~~~ 294 (308)
.+....
T Consensus 400 Niv~rs 405 (461)
T KOG4199|consen 400 NIVVRS 405 (461)
T ss_pred HHHHhh
Confidence 776443
No 16
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.89 E-value=3.4e-05 Score=75.77 Aligned_cols=132 Identities=18% Similarity=0.141 Sum_probs=100.1
Q ss_pred CcHHHHHHhCcHHHHHHHHhccChh-HHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 044095 169 SNRRVAVEAGAVGAVIEVVAELDAA-AGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVI 247 (308)
Q Consensus 169 ~Nr~~iV~aGAVp~LVeLL~~~s~~-~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sL 247 (308)
.-...++.+|+||.+|+++.+-..+ +.-+|.=+|.++++--.....+.-..|+||.++.+|-++...-+|.||.+|-++
T Consensus 105 PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNi 184 (526)
T COG5064 105 PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNI 184 (526)
T ss_pred CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccc
Confidence 3467889999999999999654343 344788899999986555555554579999999999999999999999999999
Q ss_pred hcCCcchhhccCCccH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCCcc
Q 044095 248 YGGGDQLVVAAPPEEV-ARAVELALQGNCTPRGRRKGTQLLKSLKEYGQPDTTQ 300 (308)
Q Consensus 248 C~~~~~~v~~a~~~gv-~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e~~~~~ 300 (308)
+..+..++..++.-|+ .+++-++.+..-.-..-|.|..+|-.|++...-.-.|
T Consensus 185 AGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 185 AGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred cCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 9877666655777775 4776666654212356689999999998876544333
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.79 E-value=3.7e-05 Score=81.09 Aligned_cols=160 Identities=11% Similarity=0.026 Sum_probs=117.6
Q ss_pred cccchHHHHHHHhCCCCCCCCCcHHHHHHHhc---CCCCcHHHHHHhCcHHHHHHHHhc-cChhHHHHHHHHHHHHhcCh
Q 044095 134 DRLAALYLLERSLLPNPPSDQACQPELMRALC---LAESNRRVAVEAGAVGAVIEVVAE-LDAAAGERALAALELMCTVA 209 (308)
Q Consensus 134 ~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~---~~~~Nr~~iV~aGAVp~LVeLL~~-~s~~~~E~ALAiL~~La~~~ 209 (308)
.+.+.|+.||+||+.....-++.+-++|+||. ...+||-.|.+.+.|+.|+++|+. .+.+++|....+|.+|++++
T Consensus 272 rqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D 351 (717)
T KOG1048|consen 272 RQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND 351 (717)
T ss_pred HHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh
Confidence 34589999999999877544443458999998 335799999999999999999984 68999999999999999998
Q ss_pred hhHHHHHhccCcHHHHHHHhcC-CC----HHH---------HHHHHHHHHHHhcCCcc-hhhccCCcc-HHHHHHHHH--
Q 044095 210 EGAEETRAHALAVPVMVTMMGQ-MA----GRG---------KEYAISVLAVIYGGGDQ-LVVAAPPEE-VARAVELAL-- 271 (308)
Q Consensus 210 eGr~aI~~~~gaIp~LV~lLr~-gS----~~~---------KE~AVa~L~sLC~~~~~-~v~~a~~~g-v~~Ll~Lll-- 271 (308)
.=+..|+.+ ++..|-+-+-. -| ... =-+++++|-++..-+.+ +.++-..+| |..|+-.+.
T Consensus 352 ~lK~~ii~~--al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~ 429 (717)
T KOG1048|consen 352 ALKMLIITS--ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA 429 (717)
T ss_pred HHHHHHHHH--HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH
Confidence 888888873 57887665542 22 111 14678888888774433 222322344 666654332
Q ss_pred --hCCCCHHHHHHHHHHHHHHHhcCC
Q 044095 272 --QGNCTPRGRRKGTQLLKSLKEYGQ 295 (308)
Q Consensus 272 --qg~cS~raKrKA~~LLklL~~~~e 295 (308)
.++|+.+.-|.+..+|+.|..--+
T Consensus 430 i~~~~~d~K~VENcvCilRNLSYrl~ 455 (717)
T KOG1048|consen 430 IQKSDLDSKSVENCVCILRNLSYRLE 455 (717)
T ss_pred HHhccccchhHHHHHHHHhhcCchhh
Confidence 467899999999999999875444
No 18
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=97.78 E-value=8e-05 Score=73.23 Aligned_cols=115 Identities=16% Similarity=0.077 Sum_probs=89.9
Q ss_pred cchHHHHHHHhCCCC-CCCCCcHHHHHHHhcCCCCcHHH-HHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhh-H
Q 044095 136 LAALYLLERSLLPNP-PSDQACQPELMRALCLAESNRRV-AVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEG-A 212 (308)
Q Consensus 136 ~~AI~lLV~LL~~g~-~~~k~~a~a~l~aL~~~~~Nr~~-iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eG-r 212 (308)
.|.++.+|++|.+.- +--+..++=++.|++....+..+ +|++||||.+++||.+.+.++.|.++=+|.+++.+.+| |
T Consensus 113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R 192 (526)
T COG5064 113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR 192 (526)
T ss_pred ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence 378999999996532 21222233456678766666554 58899999999999999999999999999999998766 5
Q ss_pred HHHHhccCcHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCC
Q 044095 213 EETRAHALAVPVMVTMMGQMAG--RGKEYAISVLAVIYGGG 251 (308)
Q Consensus 213 ~aI~~~~gaIp~LV~lLr~gS~--~~KE~AVa~L~sLC~~~ 251 (308)
.-|.. -|++..|+.+|.+... .--.+|...|.+||++.
T Consensus 193 D~vL~-~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGk 232 (526)
T COG5064 193 DYVLQ-CGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGK 232 (526)
T ss_pred HHHHh-cCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCC
Confidence 55555 6899999999987533 66688999999999965
No 19
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.74 E-value=3.5e-05 Score=52.15 Aligned_cols=40 Identities=25% Similarity=0.378 Sum_probs=37.7
Q ss_pred CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhc
Q 044095 168 ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCT 207 (308)
Q Consensus 168 ~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~ 207 (308)
++||..++++|+|+.|+++|.+.+.++++.|+.+|.+|+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999999999999974
No 20
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=97.66 E-value=0.00014 Score=76.91 Aligned_cols=92 Identities=12% Similarity=0.221 Sum_probs=78.9
Q ss_pred HHHHHhcC-CCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcC---hhhHHHHHhccCcHHHHHHHhcC-CC
Q 044095 159 ELMRALCL-AESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTV---AEGAEETRAHALAVPVMVTMMGQ-MA 233 (308)
Q Consensus 159 a~l~aL~~-~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~---~eGr~aI~~~~gaIp~LV~lLr~-gS 233 (308)
+.+.-||- +.+.|.++-+-|.|+.||.||.....++.-.|..+|.+|.-- .+++.+|.+ .++|+.+|++||. +-
T Consensus 255 aylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~-~~Gv~~l~~~Lr~t~D 333 (717)
T KOG1048|consen 255 AYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKE-LNGVPTLVRLLRHTQD 333 (717)
T ss_pred HHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhh-cCChHHHHHHHHhhcc
Confidence 44445774 345677888899999999999988899999999999999963 468999998 5689999999998 68
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 044095 234 GRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 234 ~~~KE~AVa~L~sLC~~~ 251 (308)
..-+|...++||+|..+|
T Consensus 334 ~ev~e~iTg~LWNLSS~D 351 (717)
T KOG1048|consen 334 DEVRELITGILWNLSSND 351 (717)
T ss_pred hHHHHHHHHHHhcccchh
Confidence 899999999999999884
No 21
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00054 Score=73.36 Aligned_cols=112 Identities=14% Similarity=0.114 Sum_probs=89.7
Q ss_pred chHHHHHHHhCCCC-CCCCCcHHHHHHHhc-CCCCcHHHHHHhCcHHHHHHHHhc-cChhHHHHHHHHHHHHhcChhhHH
Q 044095 137 AALYLLERSLLPNP-PSDQACQPELMRALC-LAESNRRVAVEAGAVGAVIEVVAE-LDAAAGERALAALELMCTVAEGAE 213 (308)
Q Consensus 137 ~AI~lLV~LL~~g~-~~~k~~a~a~l~aL~-~~~~Nr~~iV~aGAVp~LVeLL~~-~s~~~~E~ALAiL~~La~~~eGr~ 213 (308)
.-+|-||.||+..+ ...+..+..+|..|| ..++-...+|+.||||+|++-|.. .--+++|.+|.+|+.|+. +.+++
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR-~H~~A 289 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR-RHPKA 289 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh-hccHH
Confidence 46788888888554 333433446677788 668999999999999999998863 357889999999999997 45555
Q ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044095 214 ETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 214 aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~ 251 (308)
-+ + +|+|...+..|.--|-..+..|++|-.|.|..-
T Consensus 290 iL-~-AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 290 IL-Q-AGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred HH-h-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55 5 589999999999888888899999999999854
No 22
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.53 E-value=0.00023 Score=48.07 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=37.7
Q ss_pred ChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044095 208 VAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 208 ~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~ 249 (308)
+++++.+|.+ .|+|+.||++|+....+-+++|+.+|.+||.
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4688999998 7899999999999999999999999999984
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.41 E-value=0.0018 Score=66.09 Aligned_cols=123 Identities=15% Similarity=0.157 Sum_probs=98.4
Q ss_pred HHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 044095 171 RRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGG 250 (308)
Q Consensus 171 r~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~ 250 (308)
...+++.+.++.++..|.+.+..+.+.|+.+|..|+.+.+|.+.+.. .+.+..|..++...++..|=....++..|+..
T Consensus 112 ~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~ 190 (503)
T PF10508_consen 112 AQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQSSDIVRCRVYELLVEIASH 190 (503)
T ss_pred HHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhccCHHHHHHHHHHHHHHHhc
Confidence 34467789999999999999999999999999999999999998887 55699999999987777777788999999988
Q ss_pred CcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCC
Q 044095 251 GDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKEYGQ 295 (308)
Q Consensus 251 ~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e 295 (308)
+.+....+...|+...+.-.+.++ .--.|..|.++|.-|.....
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalell~~La~~~~ 234 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALELLSELAETPH 234 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHHHHHHHcChh
Confidence 776555566677655433344442 66678888899998887544
No 24
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.29 E-value=0.002 Score=61.49 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=116.3
Q ss_pred ChHHHHHHHHhHhccCCCCcc--cchHHHHHHHhCCCCCCC----CCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHH-
Q 044095 115 SLQELFHLAELQLSSGSDSDR--LAALYLLERSLLPNPPSD----QACQPELMRALCLAESNRRVAVEAGAVGAVIEVV- 187 (308)
Q Consensus 115 ~~~~~f~l~~l~lss~~i~~~--~~AI~lLV~LL~~g~~~~----k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL- 187 (308)
.+++.+-|+.|.......... .++++.+++.|....... +..+-..+.+|...+++|..+++.|.|+.|+++|
T Consensus 122 ~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 122 QLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILR 201 (312)
T ss_dssp HHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHH
Confidence 466777777777655543332 268888888888632111 1112356667889999999999999999999999
Q ss_pred -----hc-cChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCcc-hhhccC
Q 044095 188 -----AE-LDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQM-AGRGKEYAISVLAVIYGGGDQ-LVVAAP 259 (308)
Q Consensus 188 -----~~-~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~g-S~~~KE~AVa~L~sLC~~~~~-~v~~a~ 259 (308)
.. ..-.+.-+++-++..|+-+++....+..+ +.|+.|+++++.. .++-..-++++|.||+..+.. ....++
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv 280 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV 280 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 22 23566778999999999999999999884 5999999999975 788888999999999887653 333445
Q ss_pred CccHHHHHHHHHhCCC-CHHHHHHHHHH
Q 044095 260 PEEVARAVELALQGNC-TPRGRRKGTQL 286 (308)
Q Consensus 260 ~~gv~~Ll~Lllqg~c-S~raKrKA~~L 286 (308)
..++...+..+..... .+..++.-..|
T Consensus 281 ~~~~l~~l~~L~~rk~~Dedl~edl~~L 308 (312)
T PF03224_consen 281 LCGLLKTLQNLSERKWSDEDLTEDLEFL 308 (312)
T ss_dssp HH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred HccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 5556665555544322 33444443333
No 25
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.17 E-value=0.0033 Score=55.11 Aligned_cols=129 Identities=14% Similarity=0.122 Sum_probs=100.4
Q ss_pred HHHHH---hcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHH
Q 044095 159 ELMRA---LCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGR 235 (308)
Q Consensus 159 a~l~a---L~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~ 235 (308)
.+++| .+-++-|-.-+-+..+....|+-|.+.++.++|.+++.|.+||-...+++-|.+ +++|+.++..+.+-.+.
T Consensus 36 qv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~e-a~g~plii~~lssp~e~ 114 (173)
T KOG4646|consen 36 QVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIRE-ALGLPLIIFVLSSPPEI 114 (173)
T ss_pred HHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHH-hcCCceEEeecCCChHH
Confidence 45554 557788999999999999999999999999999999999999999999999977 78999999999888888
Q ss_pred HHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHH-hCCCCHHHHHHHHHHHHHH
Q 044095 236 GKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELAL-QGNCTPRGRRKGTQLLKSL 290 (308)
Q Consensus 236 ~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lll-qg~cS~raKrKA~~LLklL 290 (308)
.--.|+..|+-||.+++..+.+.+.-.|...+.--. .. +-+-+.-|...|+-.
T Consensus 115 tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~--s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 115 TVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESK--SHDERNLASAFLDKH 168 (173)
T ss_pred HHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHh--hHHHHHHHHHHHHhh
Confidence 888999999999998876665555555544332222 22 444455555555543
No 26
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0017 Score=66.48 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=89.1
Q ss_pred HhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Q 044095 163 ALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAIS 242 (308)
Q Consensus 163 aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa 242 (308)
-|++..+||..+++-|.|..|+.++.....++....+.+|.+|+-....|..+++ .|.+|.|+.+|.+... +.-|+-
T Consensus 330 KLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~-~GllP~l~~ll~~d~~--~~iA~~ 406 (791)
T KOG1222|consen 330 KLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVN-GGLLPHLASLLDSDTK--HGIALN 406 (791)
T ss_pred HhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhh-ccchHHHHHHhCCccc--chhhhh
Confidence 5889999999999999999999999988899999999999999998888999988 7899999999976543 445999
Q ss_pred HHHHHhcCCcchhhccCCccHHHHHHHHHhC
Q 044095 243 VLAVIYGGGDQLVVAAPPEEVARAVELALQG 273 (308)
Q Consensus 243 ~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg 273 (308)
+|+.|+.+++-+.--+..+.|.-+...++.|
T Consensus 407 ~lYh~S~dD~~K~MfayTdci~~lmk~v~~~ 437 (791)
T KOG1222|consen 407 MLYHLSCDDDAKAMFAYTDCIKLLMKDVLSG 437 (791)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998887554334455555555555555
No 27
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.08 E-value=0.0012 Score=43.40 Aligned_cols=40 Identities=23% Similarity=0.368 Sum_probs=36.5
Q ss_pred CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhc
Q 044095 168 ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCT 207 (308)
Q Consensus 168 ~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~ 207 (308)
++|+..+++.|+|+.|+++|.+.+.+.++.|+.+|.+|+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 4589999999999999999998889999999999999873
No 28
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0014 Score=66.98 Aligned_cols=129 Identities=11% Similarity=0.034 Sum_probs=91.6
Q ss_pred HHHhHhccCCCCcccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHH
Q 044095 122 LAELQLSSGSDSDRLAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAA 201 (308)
Q Consensus 122 l~~l~lss~~i~~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAi 201 (308)
|+.|+-||..-++ .+.+.-|++|.--.++.-....--++.||+.+.++|.++|..|-+|-|+.+|.+ +....-|+.+
T Consensus 331 LSIf~eNK~~M~~-~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~--d~~~~iA~~~ 407 (791)
T KOG1222|consen 331 LSIFDENKIVMEQ-NGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS--DTKHGIALNM 407 (791)
T ss_pred hhhhccchHHHHh-ccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC--cccchhhhhh
Confidence 4455555544333 567777777766444222211124555899999999999999999999999965 3334569999
Q ss_pred HHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH-HHHhcCCcch
Q 044095 202 LELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVL-AVIYGGGDQL 254 (308)
Q Consensus 202 L~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L-~sLC~~~~~~ 254 (308)
|..|+.+++.+..+.- ..+|+.+++.+-.++...-..++-+| .+||.+.++.
T Consensus 408 lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNa 460 (791)
T KOG1222|consen 408 LYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNA 460 (791)
T ss_pred hhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccc
Confidence 9999998888887766 56999999999888766555555433 6788776653
No 29
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=96.96 E-value=0.0026 Score=71.51 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=106.5
Q ss_pred hHHHHHHHHhHh-ccCCCCcccchHHHHHHHhCCCCCCC--CC--cHHHHHHH----hcCCCCcHHHHHHhCcHHHHHHH
Q 044095 116 LQELFHLAELQL-SSGSDSDRLAALYLLERSLLPNPPSD--QA--CQPELMRA----LCLAESNRRVAVEAGAVGAVIEV 186 (308)
Q Consensus 116 ~~~~f~l~~l~l-ss~~i~~~~~AI~lLV~LL~~g~~~~--k~--~a~a~l~a----L~~~~~Nr~~iV~aGAVp~LVeL 186 (308)
|-+||.|+.--. ||..|=...||+..||++|..+.... +. .+.+.|+| |+.++..|...-+-..+..|++.
T Consensus 459 LSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~ 538 (2195)
T KOG2122|consen 459 LSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQH 538 (2195)
T ss_pred HHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHH
Confidence 667788877665 77766666899999999999663211 11 13477886 45677788888899999999999
Q ss_pred HhccChhHHHHHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044095 187 VAELDAAAGERALAALELMCT-VAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 187 L~~~s~~~~E~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~ 251 (308)
|.+.+-.++..++..|.+|+. +++-.+.|.+ .|+|+.|-.+|.....---+-++++|.||--+.
T Consensus 539 LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 539 LKSHSLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhcceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 998888889999999999987 6788888888 689999999999865555577888888886543
No 30
>PF05536 Neurochondrin: Neurochondrin
Probab=96.93 E-value=0.013 Score=60.74 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=109.5
Q ss_pred cchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCC----cHHHHHHhCcHHHHHHHHhc-------cChhHHHHHHHHHHH
Q 044095 136 LAALYLLERSLLPNPPSDQACQPELMRALCLAES----NRRVAVEAGAVGAVIEVVAE-------LDAAAGERALAALEL 204 (308)
Q Consensus 136 ~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~----Nr~~iV~aGAVp~LVeLL~~-------~s~~~~E~ALAiL~~ 204 (308)
...+.--+++|+...+..|..+=.++..++...+ +|.+|-++=....|-.||+. ........|++||..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4567777888887665444322245556775533 35567777557899999975 236778899999999
Q ss_pred HhcChhhH--HHHHhccCcHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHH
Q 044095 205 MCTVAEGA--EETRAHALAVPVMVTMMGQMAG-RGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRR 281 (308)
Q Consensus 205 La~~~eGr--~aI~~~~gaIp~LV~lLr~gS~-~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKr 281 (308)
+|..++-+ ..|. +-||.|+++|...+. ...+.|..+|..|+............+++..|.+.+.+ .++.++
T Consensus 84 f~~~~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~~~~~E 157 (543)
T PF05536_consen 84 FCRDPELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---QSFQME 157 (543)
T ss_pred HcCChhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---CcchHH
Confidence 99976653 3333 369999999999887 99999999999999766554444445567777665554 577889
Q ss_pred HHHHHHHHHHhcCC
Q 044095 282 KGTQLLKSLKEYGQ 295 (308)
Q Consensus 282 KA~~LLklL~~~~e 295 (308)
.|..+|-.+....+
T Consensus 158 ~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 158 IALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHhcc
Confidence 99877777655433
No 31
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.028 Score=55.29 Aligned_cols=132 Identities=12% Similarity=0.072 Sum_probs=105.4
Q ss_pred HhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcC-hhhHHHHHhccCcHHHHHHHhcC-CCHHHHHHH
Q 044095 163 ALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTV-AEGAEETRAHALAVPVMVTMMGQ-MAGRGKEYA 240 (308)
Q Consensus 163 aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~eGr~aI~~~~gaIp~LV~lLr~-gS~~~KE~A 240 (308)
-|+-.-+|=..++.-|....|+.+|.+.+..+.+.|+.+|...+.+ +.-.+.+.+ .++...|+++|.. .+...|-.|
T Consensus 109 ~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~L~~Ll~~ls~~~~~~~r~ka 187 (342)
T KOG2160|consen 109 ELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE-LGALSKLLKILSSDDPNTVRTKA 187 (342)
T ss_pred HHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-cccHHHHHHHHccCCCchHHHHH
Confidence 3556668899999999999999999999999999999999999985 677888888 6799999999986 577888889
Q ss_pred HHHHHHHhcCCcchh-hccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCC
Q 044095 241 ISVLAVIYGGGDQLV-VAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKEYGQ 295 (308)
Q Consensus 241 Va~L~sLC~~~~~~v-~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e 295 (308)
+.++.+|-++...-. .--...|...|..++.+++-+.+.|+||..|+..|-....
T Consensus 188 L~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 188 LFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 998888888764222 1233556667777777766689999999999998865443
No 32
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.55 E-value=0.0072 Score=39.56 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=35.4
Q ss_pred hhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044095 209 AEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 209 ~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~ 249 (308)
++++..|.+ .|+|+.|+++|.....+-+++|+.+|.+|+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 457788877 6899999999998899999999999999973
No 33
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=96.42 E-value=0.02 Score=64.85 Aligned_cols=141 Identities=17% Similarity=0.083 Sum_probs=100.2
Q ss_pred hcCCCCcHHHHHHhCcHHHHHHHHhc-----c-------ChhHHHHHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHHhc
Q 044095 164 LCLAESNRRVAVEAGAVGAVIEVVAE-----L-------DAAAGERALAALELMCT-VAEGAEETRAHALAVPVMVTMMG 230 (308)
Q Consensus 164 L~~~~~Nr~~iV~aGAVp~LVeLL~~-----~-------s~~~~E~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~lLr 230 (308)
|+.+++.|..|-+.|++.+|-+||.. + ...+...|+-+|.+|-- +..+|+.++...|+|.+||..|.
T Consensus 325 ~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~ 404 (2195)
T KOG2122|consen 325 LSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLI 404 (2195)
T ss_pred hhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHh
Confidence 45678899999999999999999851 1 23456677778888875 45679999998999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCcchhhccCCcc--HHHHHHHHHhCCCCHHHHHHHH-HHHHHH-HhcCCCCCccccccCC
Q 044095 231 QMAGRGKEYAISVLAVIYGGGDQLVVAAPPEE--VARAVELALQGNCTPRGRRKGT-QLLKSL-KEYGQPDTTQDEMNGC 306 (308)
Q Consensus 231 ~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~g--v~~Ll~Lllqg~cS~raKrKA~-~LLklL-~~~~e~~~~~~~~~g~ 306 (308)
..++.-..--++||-||+=..+.....++++- |-.|....++. ...---||. ..|+.| ..|.+|.-++=.+.||
T Consensus 405 s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~--~kEsTLKavLSALWNLSAHcteNKA~iCaVDGA 482 (2195)
T KOG2122|consen 405 SAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN--KKESTLKAVLSALWNLSAHCTENKAEICAVDGA 482 (2195)
T ss_pred cChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh--cccchHHHHHHHHhhhhhcccccchhhhcccch
Confidence 99988888888999999865554444455444 34555445554 221222443 444444 4677888788777776
No 34
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.41 E-value=0.018 Score=54.91 Aligned_cols=155 Identities=10% Similarity=0.009 Sum_probs=92.6
Q ss_pred hHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhc----cChhHHHHHHHHHHHHhcChhhHH
Q 044095 138 ALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAE----LDAAAGERALAALELMCTVAEGAE 213 (308)
Q Consensus 138 AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~----~s~~~~E~ALAiL~~La~~~eGr~ 213 (308)
....|.+++..+....+..+..++..|......+......++++.++++|.+ .+.+..+-|+..|..|...++.|.
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 5666777666553211211234555565555555555448888999999974 234455889999999999999999
Q ss_pred HHHhccCcHHHHHHHh------cC-CCHHHHHHHHHHHHHHhcCCcchhhccCCccH-HHHHHHHHhCCCCHHHHHHHHH
Q 044095 214 ETRAHALAVPVMVTMM------GQ-MAGRGKEYAISVLAVIYGGGDQLVVAAPPEEV-ARAVELALQGNCTPRGRRKGTQ 285 (308)
Q Consensus 214 aI~~~~gaIp~LV~lL------r~-gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv-~~Ll~Lllqg~cS~raKrKA~~ 285 (308)
.+.+ .++|..|+++| .. ...+-.-+++-+||.|+.+... +......++ +.++.++...- -++.-|-+..
T Consensus 186 ~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la 262 (312)
T PF03224_consen 186 VFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEI-AEELNKKYLIPLLADILKDSI-KEKVVRVSLA 262 (312)
T ss_dssp HHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHH-HHHHHTTSHHHHHHHHHHH---SHHHHHHHHH
T ss_pred HHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHH-HHHHhccchHHHHHHHHHhcc-cchHHHHHHH
Confidence 9999 78999999999 22 2456667888999999876543 222334444 45544444331 2333355555
Q ss_pred HHHHHHhcCC
Q 044095 286 LLKSLKEYGQ 295 (308)
Q Consensus 286 LLklL~~~~e 295 (308)
.|+.|-....
T Consensus 263 ~l~Nl~~~~~ 272 (312)
T PF03224_consen 263 ILRNLLSKAP 272 (312)
T ss_dssp HHHHTTSSSS
T ss_pred HHHHHHhccH
Confidence 5665554443
No 35
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.11 E-value=0.016 Score=61.96 Aligned_cols=16 Identities=6% Similarity=0.165 Sum_probs=10.8
Q ss_pred HHHHhCcHHHHHHHHh
Q 044095 173 VAVEAGAVGAVIEVVA 188 (308)
Q Consensus 173 ~iV~aGAVp~LVeLL~ 188 (308)
.+...|.|.-|+..|.
T Consensus 728 ~vLse~~iqnLik~lP 743 (1102)
T KOG1924|consen 728 DVLSESMIQNLIKHLP 743 (1102)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4556677777777664
No 36
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.07 E-value=0.12 Score=52.29 Aligned_cols=136 Identities=10% Similarity=0.058 Sum_probs=100.2
Q ss_pred HHHHHhcCCCCcHHHHHHhCcHHHHHHHHhcc--ChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCC-CHH
Q 044095 159 ELMRALCLAESNRRVAVEAGAVGAVIEVVAEL--DAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQM-AGR 235 (308)
Q Consensus 159 a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~--s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~g-S~~ 235 (308)
..+..|...++-|..+++.+.|+.|+++|+.. .-.+.-+++-++..|+-.+++.+.+.. .+.|+.|+++++.. -++
T Consensus 166 ~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEK 244 (429)
T cd00256 166 RCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEK 244 (429)
T ss_pred HHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHH
Confidence 56667888899999999999999999999753 346777899999999999887777755 68999999999975 567
Q ss_pred HHHHHHHHHHHHhcCCc------chhhccCCccHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHhcCC
Q 044095 236 GKEYAISVLAVIYGGGD------QLVVAAPPEEVARAVELALQGNC-TPRGRRKGTQLLKSLKEYGQ 295 (308)
Q Consensus 236 ~KE~AVa~L~sLC~~~~------~~v~~a~~~gv~~Ll~Lllqg~c-S~raKrKA~~LLklL~~~~e 295 (308)
-..-++++|.||..... .....++..|+..++..+..... .+...+.-..|-+.|.+..+
T Consensus 245 vvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k 311 (429)
T cd00256 245 VIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ 311 (429)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77888999999987431 12223445567666665554433 45566666666666665543
No 37
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.94 E-value=0.081 Score=54.18 Aligned_cols=135 Identities=10% Similarity=0.039 Sum_probs=101.0
Q ss_pred cchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcC-hhhHHH
Q 044095 136 LAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTV-AEGAEE 214 (308)
Q Consensus 136 ~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~eGr~a 214 (308)
.+.++.++..|..+...-...+..++..|+.++.+...++..+.+..|..++...++...=+++.++..++.. ++....
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 4788888888886654333334567888998888888899999999999999876777788899999999876 555555
Q ss_pred HHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHH-HHHHHHHh
Q 044095 215 TRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVA-RAVELALQ 272 (308)
Q Consensus 215 I~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~-~Ll~Lllq 272 (308)
+.+ .|.+..+++.|.+.-.--|.+|+.+|..|+......- -....|+. .++.++..
T Consensus 198 ~~~-sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~-yL~~~gi~~~L~~~l~~ 254 (503)
T PF10508_consen 198 VVN-SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQ-YLEQQGIFDKLSNLLQD 254 (503)
T ss_pred HHh-ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHH-HHHhCCHHHHHHHHHhc
Confidence 555 7899999999998666789999999999998543321 13345544 45544443
No 38
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.68 E-value=0.026 Score=42.68 Aligned_cols=85 Identities=25% Similarity=0.284 Sum_probs=60.3
Q ss_pred HHHHHHHhCCCC-CCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHh
Q 044095 139 LYLLERSLLPNP-PSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRA 217 (308)
Q Consensus 139 I~lLV~LL~~g~-~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~ 217 (308)
|+.|++.|..+. ..-+ ..++..|+...+ ..+++.|++++.+.+..++..|+..|..+- .
T Consensus 1 i~~L~~~l~~~~~~~vr---~~a~~~L~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVR---AEAARALGELGD-------PEAIPALIELLKDEDPMVRRAAARALGRIG----------D 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHH---HHHHHHHHCCTH-------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------H
T ss_pred CHHHHHHHhcCCCHHHH---HHHHHHHHHcCC-------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------C
Confidence 678889885443 2222 355556664422 245999999999888999999999888762 2
Q ss_pred ccCcHHHHHHHhcCCC-HHHHHHHHHHH
Q 044095 218 HALAVPVMVTMMGQMA-GRGKEYAISVL 244 (308)
Q Consensus 218 ~~gaIp~LV~lLr~gS-~~~KE~AVa~L 244 (308)
..+++.|+++|.+.. ..-|+.|+.+|
T Consensus 61 -~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 348999999998864 45588888877
No 39
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.26 E-value=0.073 Score=46.23 Aligned_cols=109 Identities=17% Similarity=0.276 Sum_probs=80.5
Q ss_pred cchHHHHHHHhCCCCCCCCCcHHHHHHHhc--CCCCcH---HHHHHhCcHHHHHHHHhcc---------ChhHHHHHHHH
Q 044095 136 LAALYLLERSLLPNPPSDQACQPELMRALC--LAESNR---RVAVEAGAVGAVIEVVAEL---------DAAAGERALAA 201 (308)
Q Consensus 136 ~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~--~~~~Nr---~~iV~aGAVp~LVeLL~~~---------s~~~~E~ALAi 201 (308)
......+|+.|+++.... ..+..|. +...+. ...++.|.+..|+++|... +......++.-
T Consensus 65 ~~~p~~~i~~L~~~~~~~-----~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~C 139 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPSTS-----KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRC 139 (187)
T ss_dssp CHHHHHHHHHHTTT--HH-----HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCccH-----HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHH
Confidence 456777888888775322 4555444 222333 3567899999999999621 12455678999
Q ss_pred HHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044095 202 LELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 202 L~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~ 249 (308)
|..|..+..|+..+..+.++|..|+..|...+.+.|..|+-+|..||.
T Consensus 140 lkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc~ 187 (187)
T PF06371_consen 140 LKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALCL 187 (187)
T ss_dssp HHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999994
No 40
>PRK09687 putative lyase; Provisional
Probab=95.24 E-value=0.18 Score=47.93 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=40.0
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhcc
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAA 258 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a 258 (308)
+++.|+.+|.|.+.++...|+..|..+- . ..+|+.|++.|..+.-+ ..|+.+|-.+-.
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~~~----------~-~~av~~Li~~L~~~~~~--~~a~~ALg~ig~--------- 250 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLALRK----------D-KRVLSVLIKELKKGTVG--DLIIEAAGELGD--------- 250 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHccC----------C-hhHHHHHHHHHcCCchH--HHHHHHHHhcCC---------
Confidence 3444444444444444444444443321 1 23566666666654422 234444433311
Q ss_pred CCccHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044095 259 PPEEVARAVELALQGNCTPRGRRKGTQLLK 288 (308)
Q Consensus 259 ~~~gv~~Ll~Lllqg~cS~raKrKA~~LLk 288 (308)
.+.++.|..++ +.+.+.+.++||.+-|+
T Consensus 251 -~~a~p~L~~l~-~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 251 -KTLLPVLDTLL-YKFDDNEIITKAIDKLK 278 (280)
T ss_pred -HhHHHHHHHHH-hhCCChhHHHHHHHHHh
Confidence 12234444333 22237778888876664
No 41
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.45 Score=46.98 Aligned_cols=157 Identities=14% Similarity=0.097 Sum_probs=103.1
Q ss_pred cchHHHHHHHhCCCCCCCCCcHHHHHHHhcC-CCCcHHHHHHhCcHHHHHHHHhcc-ChhHHHHHHHHHHHHhcC-hhhH
Q 044095 136 LAALYLLERSLLPNPPSDQACQPELMRALCL-AESNRRVAVEAGAVGAVIEVVAEL-DAAAGERALAALELMCTV-AEGA 212 (308)
Q Consensus 136 ~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~-~~~Nr~~iV~aGAVp~LVeLL~~~-s~~~~E~ALAiL~~La~~-~eGr 212 (308)
.+.+.+|++.|+.+...-+..++.++..... ++.--..+.+.|+.+.|+.+|... +....-+||.++..|-.+ ..|.
T Consensus 123 ~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 123 LGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred ccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 4566666666666654445445556665443 355677899999999999999744 444458899999999885 6888
Q ss_pred HHHHhccCcHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCcchhhccCCccHH-HHHHHHHhCCCCHHHHHHHH-HHHH
Q 044095 213 EETRAHALAVPVMVTMMGQ--MAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVA-RAVELALQGNCTPRGRRKGT-QLLK 288 (308)
Q Consensus 213 ~aI~~~~gaIp~LV~lLr~--gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~-~Ll~Lllqg~cS~raKrKA~-~LLk 288 (308)
.++.. .+|...|.++|.+ .+.+-|-.|+..|..|-..+.....++-..+.. .+..+.... ....++.|. .+|.
T Consensus 203 ~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l--~~~~~e~~l~~~l~ 279 (342)
T KOG2160|consen 203 DEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSL--DFEVNEAALTALLS 279 (342)
T ss_pred HHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhcc--chhhhHHHHHHHHH
Confidence 88887 4579999999998 578888889988888876554332233333332 222222233 444555554 5555
Q ss_pred HHHhcCC
Q 044095 289 SLKEYGQ 295 (308)
Q Consensus 289 lL~~~~e 295 (308)
++.....
T Consensus 280 ~l~~~~~ 286 (342)
T KOG2160|consen 280 LLSELST 286 (342)
T ss_pred HHHHHhh
Confidence 5554433
No 42
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=94.72 E-value=0.46 Score=42.20 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=85.4
Q ss_pred chHHHHHHHhCCCCCCCCCcHHH----HHHH---hcCCCCcHHHHHHhCcHHHHHHHHhcc--ChhHHHHHHHHHHHHhc
Q 044095 137 AALYLLERSLLPNPPSDQACQPE----LMRA---LCLAESNRRVAVEAGAVGAVIEVVAEL--DAAAGERALAALELMCT 207 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~a~a----~l~a---L~~~~~Nr~~iV~aGAVp~LVeLL~~~--s~~~~E~ALAiL~~La~ 207 (308)
+.+..|++++++|..... +... +|.+ |.-+.-.-...++.--|..++.++... +......||++|+.+..
T Consensus 11 ~Gl~~L~~~iE~g~~~~~-~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 11 DGLTLLIKMIEEGTEIQP-CKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred cCHHHHHHHHHcCCccCc-chHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 689999999999985211 1122 2222 223322245677778888888888632 57888999999999999
Q ss_pred ChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCc
Q 044095 208 VAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGD 252 (308)
Q Consensus 208 ~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~ 252 (308)
.....-.+++.+=-++.|+..|...+.+-+.+|++.+-+|....+
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 876644444547789999999999999999999999999977553
No 43
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=94.15 E-value=0.058 Score=47.43 Aligned_cols=110 Identities=20% Similarity=0.140 Sum_probs=76.7
Q ss_pred HHHHHHHHhHhccCC--CCcccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhH
Q 044095 117 QELFHLAELQLSSGS--DSDRLAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAA 194 (308)
Q Consensus 117 ~~~f~l~~l~lss~~--i~~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~ 194 (308)
|....|+.|.-.-.. +=.+.+++-+.|+-|++.+..-+....+.+-|||.++.|+.-|+++|.|+.++..+++..+.+
T Consensus 36 qv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~plii~~lssp~e~t 115 (173)
T KOG4646|consen 36 QVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLIIFVLSSPPEIT 115 (173)
T ss_pred HHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceEEeecCCChHHH
Confidence 444555555443222 124567899999999876532222233555688999999999999999999999999888888
Q ss_pred HHHHHHHHHHHhcC-hhhHHHHHhccCcHHHHHHHhcC
Q 044095 195 GERALAALELMCTV-AEGAEETRAHALAVPVMVTMMGQ 231 (308)
Q Consensus 195 ~E~ALAiL~~La~~-~eGr~aI~~~~gaIp~LV~lLr~ 231 (308)
+-.|+..|..|+-- ..-|.+|.+ +.+|+.|.+
T Consensus 116 v~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v~r 148 (173)
T KOG4646|consen 116 VHSAALFLQLLEFGERTERDELLS-----PAVVRTVQR 148 (173)
T ss_pred HHHHHHHHHHhcCcccchhHHhcc-----HHHHHHHHH
Confidence 88899889888763 233555544 566666654
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=0.38 Score=52.04 Aligned_cols=118 Identities=12% Similarity=0.073 Sum_probs=97.0
Q ss_pred ccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCC--CcHHHH-HHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhh
Q 044095 135 RLAALYLLERSLLPNPPSDQACQPELMRALCLAE--SNRRVA-VEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEG 211 (308)
Q Consensus 135 ~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~--~Nr~~i-V~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eG 211 (308)
..+=|.+|+..+++....-+..+..++.+|..+. +-+..+ +.=-+|..|+++|.|..+-...+++-.|.-|......
T Consensus 120 ~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~ 199 (970)
T KOG0946|consen 120 NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSS 199 (970)
T ss_pred CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCch
Confidence 3578999999999988667766667888876553 344444 4558999999999998888899999999999998888
Q ss_pred HHHHHhccCcHHHHHHHhcC-C-CHH--HHHHHHHHHHHHhcCCc
Q 044095 212 AEETRAHALAVPVMVTMMGQ-M-AGR--GKEYAISVLAVIYGGGD 252 (308)
Q Consensus 212 r~aI~~~~gaIp~LV~lLr~-g-S~~--~KE~AVa~L~sLC~~~~ 252 (308)
...|++.++++..|..++++ | ++. --|+|+..|.+|-+++.
T Consensus 200 IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~ 244 (970)
T KOG0946|consen 200 IQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNI 244 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCc
Confidence 88999989999999999986 4 444 46999999999988764
No 45
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=93.39 E-value=0.75 Score=48.76 Aligned_cols=117 Identities=10% Similarity=0.043 Sum_probs=90.1
Q ss_pred hCcHHHHHHHHhccChhHHHHHHHHHHHHhcC-hhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchh
Q 044095 177 AGAVGAVIEVVAELDAAAGERALAALELMCTV-AEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLV 255 (308)
Q Consensus 177 aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v 255 (308)
..++..||.+|.+++....-.++.+|.+|... ..-|.-+.+ .|+|..|.+++.+--..-|.+++.+|..+..+++++.
T Consensus 418 ~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~ 496 (678)
T KOG1293|consen 418 NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEE 496 (678)
T ss_pred chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHH
Confidence 35778999999998888888899999999974 566888888 6899999999998777777889999999999888765
Q ss_pred hccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcC
Q 044095 256 VAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKEYG 294 (308)
Q Consensus 256 ~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~ 294 (308)
....-.-++.-..+....|.....++.+-+|||.|--..
T Consensus 497 k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~ 535 (678)
T KOG1293|consen 497 KFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS 535 (678)
T ss_pred HHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence 444333343211123334558889999999999886543
No 46
>PRK09687 putative lyase; Provisional
Probab=93.26 E-value=0.45 Score=45.26 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=17.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVI 247 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sL 247 (308)
+|+.|+++|.+....-+..|+..|-.+
T Consensus 160 ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 160 AIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 566666666666556666666666655
No 47
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=93.25 E-value=0.26 Score=37.09 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=57.7
Q ss_pred HHHHHHHH-hccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhcc
Q 044095 180 VGAVIEVV-AELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAA 258 (308)
Q Consensus 180 Vp~LVeLL-~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a 258 (308)
|+.|++.| .+.+......|+.+|..+- . ..+++.|++++.+....-|..|+.+|..+- +
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---~------ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------D-PEAIPALIELLKDEDPMVRRAAARALGRIG---D------ 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------H-HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---H------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------C-HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---C------
Confidence 68899999 6778888888888877331 1 246899999998889999999988887652 1
Q ss_pred CCccHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044095 259 PPEEVARAVELALQGNCTPRGRRKGTQLL 287 (308)
Q Consensus 259 ~~~gv~~Ll~Lllqg~cS~raKrKA~~LL 287 (308)
.+.+..|..++.+. .+...|+.|..-|
T Consensus 61 -~~~~~~L~~~l~~~-~~~~vr~~a~~aL 87 (88)
T PF13646_consen 61 -PEAIPALIKLLQDD-DDEVVREAAAEAL 87 (88)
T ss_dssp -HHTHHHHHHHHTC--SSHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHcCC-CcHHHHHHHHhhc
Confidence 12244555444433 2444566665543
No 48
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.79 E-value=1 Score=48.88 Aligned_cols=155 Identities=10% Similarity=0.080 Sum_probs=105.3
Q ss_pred chHHHHHHHhCCCCCCCCCc--HHHHHHHhcCCCC------cHH------------HHHHhCcHHHHHHHHhccChhHHH
Q 044095 137 AALYLLERSLLPNPPSDQAC--QPELMRALCLAES------NRR------------VAVEAGAVGAVIEVVAELDAAAGE 196 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~--a~a~l~aL~~~~~------Nr~------------~iV~aGAVp~LVeLL~~~s~~~~E 196 (308)
-+++.|+..|..|....... +-+.+.+|-.+++ |-. .|-..+-|..|++++...+=.+.-
T Consensus 61 ~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~ 140 (970)
T KOG0946|consen 61 QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRL 140 (970)
T ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhh
Confidence 36788888888775222111 1144455555542 322 244458889999999765556666
Q ss_pred HHHHHHHHHhcC--hhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHH-HHHHHHHhC
Q 044095 197 RALAALELMCTV--AEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVA-RAVELALQG 273 (308)
Q Consensus 197 ~ALAiL~~La~~--~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~-~Ll~Lllqg 273 (308)
.++-+|..|-+| .+-+.+|..++-||..||.+|++.-+--|..|+-.|..|.+.+...-..+.-+.++ .|+.++...
T Consensus 141 ~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE 220 (970)
T KOG0946|consen 141 YAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE 220 (970)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc
Confidence 788888888887 48899999999999999999999988889999999999988776433234445554 566655544
Q ss_pred CCCHH--HHHHHHHHHHHHH
Q 044095 274 NCTPR--GRRKGTQLLKSLK 291 (308)
Q Consensus 274 ~cS~r--aKrKA~~LLklL~ 291 (308)
||.+. .-+.+..||..|-
T Consensus 221 Gg~dGgIVveDCL~ll~NLL 240 (970)
T KOG0946|consen 221 GGLDGGIVVEDCLILLNNLL 240 (970)
T ss_pred CCCCCcchHHHHHHHHHHHH
Confidence 43333 4466765555443
No 49
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.55 E-value=1 Score=46.07 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=88.3
Q ss_pred HhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHh---------cChhhHHHHHh---ccCcHHHHHHHhc
Q 044095 163 ALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMC---------TVAEGAEETRA---HALAVPVMVTMMG 230 (308)
Q Consensus 163 aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La---------~~~eGr~aI~~---~~gaIp~LV~lLr 230 (308)
.|+..++=-...|+..+|+.|++||...+.+. +.+++..|- ...||.+.+.+ .++.|+.||.-+.
T Consensus 110 vlAt~PdLYp~lveln~V~slL~LLgHeNtDI---~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnve 186 (536)
T KOG2734|consen 110 VLATMPDLYPILVELNAVQSLLELLGHENTDI---AIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVE 186 (536)
T ss_pred hhhcChHHHHHHHHhccHHHHHHHhcCCCchh---HHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHH
Confidence 57888888889999999999999998655554 555555443 22456554442 2678999999999
Q ss_pred CCCHHHHHHHHHHHHH------HhcCCcchhhccCCccHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHhc-CCCCCcccc
Q 044095 231 QMAGRGKEYAISVLAV------IYGGGDQLVVAAPPEEVAR-AVELALQGNCTPRGRRKGTQLLKSLKEY-GQPDTTQDE 302 (308)
Q Consensus 231 ~gS~~~KE~AVa~L~s------LC~~~~~~v~~a~~~gv~~-Ll~Lllqg~cS~raKrKA~~LLklL~~~-~e~~~~~~~ 302 (308)
+-.+..||.|-++=.. +-..+.+...++++.|... |+.-+..-.--+-.|..|.++|.++-.. .+++.-|..
T Consensus 187 RLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~ 266 (536)
T KOG2734|consen 187 RLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP 266 (536)
T ss_pred HhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC
Confidence 8777667666554444 4333322222333333222 1111111112456788999988877655 448888888
Q ss_pred ccCCC
Q 044095 303 MNGCD 307 (308)
Q Consensus 303 ~~g~~ 307 (308)
++|=|
T Consensus 267 l~GiD 271 (536)
T KOG2734|consen 267 LDGID 271 (536)
T ss_pred cccHH
Confidence 88744
No 50
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.74 E-value=0.3 Score=46.30 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhcc------CcHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCcchh-hccCCcc-HH
Q 044095 194 AGERALAALELMCTVAEGAEETRAHA------LAVPVMVTMMGQ-MAGRGKEYAISVLAVIYGGGDQLV-VAAPPEE-VA 264 (308)
Q Consensus 194 ~~E~ALAiL~~La~~~eGr~aI~~~~------gaIp~LV~lLr~-gS~~~KE~AVa~L~sLC~~~~~~v-~~a~~~g-v~ 264 (308)
-...||.+|..|+..+.|.+.|.+.. -.+..|+++|-. ...-.||.||.+|.+||..+.... ..+...+ |.
T Consensus 140 PqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~ 219 (257)
T PF12031_consen 140 PQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS 219 (257)
T ss_pred HHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence 46789999999999999988877533 256677777754 688999999999999999886432 3455555 56
Q ss_pred HHHHHHHhC
Q 044095 265 RAVELALQG 273 (308)
Q Consensus 265 ~Ll~Lllqg 273 (308)
.|+..+-++
T Consensus 220 ~Li~FiE~a 228 (257)
T PF12031_consen 220 HLIAFIEDA 228 (257)
T ss_pred HHHHHHHHH
Confidence 676666555
No 51
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.60 E-value=1.3 Score=40.30 Aligned_cols=78 Identities=5% Similarity=-0.022 Sum_probs=61.4
Q ss_pred HhCcHHHHHHHHhc------cChhHHHHHHHHHHHHhcChhhHHHHHhccCc---HHHHHHHhcCCCHHHHHHHHHHHHH
Q 044095 176 EAGAVGAVIEVVAE------LDAAAGERALAALELMCTVAEGAEETRAHALA---VPVMVTMMGQMAGRGKEYAISVLAV 246 (308)
Q Consensus 176 ~aGAVp~LVeLL~~------~s~~~~E~ALAiL~~La~~~eGr~aI~~~~ga---Ip~LV~lLr~gS~~~KE~AVa~L~s 246 (308)
+..++..|++++.. ...+-.+..+.+|.+|+..++||..+.+.... |..|+-.+...|.--|+-+++++-|
T Consensus 50 ~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 50 SGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred hHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 44577888888865 23566789999999999999999999974433 4566666666788888999999999
Q ss_pred HhcCCcc
Q 044095 247 IYGGGDQ 253 (308)
Q Consensus 247 LC~~~~~ 253 (308)
.|...+.
T Consensus 130 ccFd~~~ 136 (192)
T PF04063_consen 130 CCFDTDS 136 (192)
T ss_pred hhccHhH
Confidence 9987653
No 52
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.30 E-value=1.5 Score=48.12 Aligned_cols=122 Identities=12% Similarity=0.049 Sum_probs=86.8
Q ss_pred CCcHHHHHHhCcHHHHHHHHhcc-ChhHHHHHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Q 044095 168 ESNRRVAVEAGAVGAVIEVVAEL-DAAAGERALAALELMCT-VAEGAEETRAHALAVPVMVTMMGQM-AGRGKEYAISVL 244 (308)
Q Consensus 168 ~~Nr~~iV~aGAVp~LVeLL~~~-s~~~~E~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~lLr~g-S~~~KE~AVa~L 244 (308)
++--.-+--.-.||+||.||+.. +-+..-.|..+|..|+. +++-.+.+++ .++||+|++.|..- ...--|.++.+|
T Consensus 201 EesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~-~~aIPvl~~kL~~IeyiDvAEQ~LqAL 279 (1051)
T KOG0168|consen 201 EESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD-EHAIPVLLEKLLTIEYIDVAEQSLQAL 279 (1051)
T ss_pred hhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec-ccchHHHHHhhhhhhhhHHHHHHHHHH
Confidence 34444444456799999999853 57778889999999998 5777777777 67999999999884 667779999999
Q ss_pred HHHhcCCcchhhccCCcc-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCC
Q 044095 245 AVIYGGGDQLVVAAPPEE-VARAVELALQGNCTPRGRRKGTQLLKSLKEYGQ 295 (308)
Q Consensus 245 ~sLC~~~~~~v~~a~~~g-v~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e 295 (308)
=-|++.... +++..| +..- +..+.= -+-.++|+|..+...++..-.
T Consensus 280 E~iSR~H~~---AiL~AG~l~a~-LsylDF-FSi~aQR~AlaiaaN~Cksi~ 326 (1051)
T KOG0168|consen 280 EKISRRHPK---AILQAGALSAV-LSYLDF-FSIHAQRVALAIAANCCKSIR 326 (1051)
T ss_pred HHHHhhccH---HHHhcccHHHH-HHHHHH-HHHHHHHHHHHHHHHHHhcCC
Confidence 999875432 345555 3321 111210 156789999999888877644
No 53
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=91.20 E-value=2.8 Score=44.57 Aligned_cols=114 Identities=10% Similarity=0.088 Sum_probs=87.0
Q ss_pred ccchHHHHHHHhCCCCCCCCCcHHHHHHHhc---CC-CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChh
Q 044095 135 RLAALYLLERSLLPNPPSDQACQPELMRALC---LA-ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAE 210 (308)
Q Consensus 135 ~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~---~~-~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~e 210 (308)
....+.+||.+|..+..+.+ ..++.+|| .. ..=|.++++.|.|..|.+++.+.+......++-+|..|.-..+
T Consensus 417 ~~dv~~plvqll~dp~~~i~---~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDPEIMIM---GITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred cchhHHHHHHHhhCcchhHH---HHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcch
Confidence 34688899999966654444 45555544 44 4458999999999999999999888889999999999997533
Q ss_pred --hHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCc
Q 044095 211 --GAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGD 252 (308)
Q Consensus 211 --Gr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~ 252 (308)
-+.+..+ .=.-..++.+..+-...-+|.|..+|-+|-++.+
T Consensus 494 e~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 494 EEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 3333333 2234678888888899999999999999977654
No 54
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=90.92 E-value=1 Score=46.26 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=65.9
Q ss_pred HHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcC-hhhHHHHHhccCcHHHHHHHhcCC----CHHHHH---HHHHHHH
Q 044095 174 AVEAGAVGAVIEVVAELDAAAGERALAALELMCTV-AEGAEETRAHALAVPVMVTMMGQM----AGRGKE---YAISVLA 245 (308)
Q Consensus 174 iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~eGr~aI~~~~gaIp~LV~lLr~g----S~~~KE---~AVa~L~ 245 (308)
-|.+|++..|.++..+.+.++-+....+|.+.|.. .|||++|.+ .||-..++++|+.- .+.+-| -+-++|.
T Consensus 83 ~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~-lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~ 161 (604)
T KOG4500|consen 83 CIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFN-LGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLH 161 (604)
T ss_pred hhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHh-cCCceehHhhhccccccCCccHHHHHHHHHHHHH
Confidence 37788888888888877888999999999999985 799999999 45668899999862 222222 2335666
Q ss_pred HHhcCCcchhhccCCccHHH
Q 044095 246 VIYGGGDQLVVAAPPEEVAR 265 (308)
Q Consensus 246 sLC~~~~~~v~~a~~~gv~~ 265 (308)
+-..++++-...+...||..
T Consensus 162 Ny~l~~~~l~aq~~~~gVl~ 181 (604)
T KOG4500|consen 162 NYILDSRELRAQVADAGVLN 181 (604)
T ss_pred HhhCCcHHHHHHHHhcccHH
Confidence 65555555444566777654
No 55
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=90.39 E-value=0.59 Score=32.87 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 044095 194 AGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVI 247 (308)
Q Consensus 194 ~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sL 247 (308)
..+.|+.+|..|+........-.. ...++.|+.+|++.++.-|++|+.+|-+|
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 456788888887765433333322 45899999999998889999999988654
No 56
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.19 E-value=3.6 Score=39.49 Aligned_cols=129 Identities=16% Similarity=0.079 Sum_probs=90.3
Q ss_pred HHHHHhcCC--CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccC---cHHHHHH-----H
Q 044095 159 ELMRALCLA--ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHAL---AVPVMVT-----M 228 (308)
Q Consensus 159 a~l~aL~~~--~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~g---aIp~LV~-----l 228 (308)
++.++|... .+...-..+.++||..+..+..|++..+--|..||..+-.++.|-.-|+.... +|..+.+ +
T Consensus 147 GVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l 226 (293)
T KOG3036|consen 147 GVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQL 226 (293)
T ss_pred HHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 566677754 34567788999999999999888888888899999999999999887775333 3333222 2
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcchh--h----ccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 044095 229 MGQMAGRGKEYAISVLAVIYGGGDQLV--V----AAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 229 Lr~gS~~~KE~AVa~L~sLC~~~~~~v--~----~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~ 292 (308)
.+.++.|--+|.+.+...||.+.+.+. . +-++.|-+. +++.. ....|+-=..||+.|+.
T Consensus 227 ~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lrd~tfs---~~l~~--D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 227 VSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLRDGTFS---LLLKD--DPETKQWLQQLLKNLCT 291 (293)
T ss_pred hcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhccchHH---HHHhc--ChhHHHHHHHHHHHhcc
Confidence 234799999999999999998765322 1 222333333 33445 45566666778877754
No 57
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=89.91 E-value=5.8 Score=35.30 Aligned_cols=117 Identities=11% Similarity=0.051 Sum_probs=80.2
Q ss_pred HHHHhCcHHHHHHHHhccC------hhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCC--HHHHHHHHHHH
Q 044095 173 VAVEAGAVGAVIEVVAELD------AAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMA--GRGKEYAISVL 244 (308)
Q Consensus 173 ~iV~aGAVp~LVeLL~~~s------~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS--~~~KE~AVa~L 244 (308)
..++.|.+..|++++.++. ++....+|..+..|-.+.----.+.. ...|.-++..+.... ..-.+.|.++|
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHH
Confidence 3567889999999998765 36666788888888876432223334 347888888887643 56678899999
Q ss_pred HHHhcCCcchhhccCCcc-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 044095 245 AVIYGGGDQLVVAAPPEE-VARAVELALQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 245 ~sLC~~~~~~v~~a~~~g-v~~Ll~Lllqg~cS~raKrKA~~LLklL~~ 292 (308)
-++..++......+.++- +..|+..+..+ +.+-+.+|-+|+..|-.
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 999988765443333333 34555444333 78888999988886643
No 58
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=89.78 E-value=5.4 Score=40.63 Aligned_cols=101 Identities=10% Similarity=0.023 Sum_probs=67.9
Q ss_pred ChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCcchhhccCCccH-HHHH
Q 044095 191 DAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQM--AGRGKEYAISVLAVIYGGGDQLVVAAPPEEV-ARAV 267 (308)
Q Consensus 191 s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~g--S~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv-~~Ll 267 (308)
+.+.++-++..|..|...++-|..+.+. ++|..|+++|+.. .-+-.=+++-+||.|+.+... +......++ ..++
T Consensus 157 ~~~~~~~~v~~L~~LL~~~~~R~~f~~~-~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~l~ 234 (429)
T cd00256 157 NNDYVQTAARCLQMLLRVDEYRFAFVLA-DGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHA-AEVLKRLSLIQDLS 234 (429)
T ss_pred CcchHHHHHHHHHHHhCCchHHHHHHHc-cCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHH-HHhhccccHHHHHH
Confidence 4667788999999999999999999884 4899999999874 346667788999999876542 212233444 4554
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhcC
Q 044095 268 ELALQGNCTPRGRRKGTQLLKSLKEYG 294 (308)
Q Consensus 268 ~Lllqg~cS~raKrKA~~LLklL~~~~ 294 (308)
.++...- -++.-|-+..+|+.|-...
T Consensus 235 ~i~k~s~-KEKvvRv~l~~l~Nll~~~ 260 (429)
T cd00256 235 DILKEST-KEKVIRIVLAIFRNLISKR 260 (429)
T ss_pred HHHHhhh-hHHHHHHHHHHHHHHhhcc
Confidence 4443220 1222355666677766644
No 59
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=89.49 E-value=7.6 Score=42.72 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=39.1
Q ss_pred chHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHh
Q 044095 137 AALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMC 206 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La 206 (308)
.++..|++.|......-+ ..++..|.... ..++++.|+++|.|.+......|+..|..|.
T Consensus 621 ~~~~~L~~~L~D~d~~VR---~~Av~~L~~~~-------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~ 680 (897)
T PRK13800 621 PSVAELAPYLADPDPGVR---RTAVAVLTETT-------PPGFGPALVAALGDGAAAVRRAAAEGLRELV 680 (897)
T ss_pred hhHHHHHHHhcCCCHHHH---HHHHHHHhhhc-------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 577888888875543333 23333443221 3557888888888877788887877776663
No 60
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=89.38 E-value=3.4 Score=36.85 Aligned_cols=110 Identities=13% Similarity=0.070 Sum_probs=57.4
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCc-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhh
Q 044095 178 GAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALA-VPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVV 256 (308)
Q Consensus 178 GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~ga-Ip~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~ 256 (308)
-.++.|++.+.+......+.|..+|..+...-..- ... +..+...+..-+...|+.++..|..+.........
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 34555555555555566666666666666532200 011 34455556667899999999988888765441110
Q ss_pred ccCCc----cHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHhcCC
Q 044095 257 AAPPE----EVA-RAVELALQGNCTPRGRRKGTQLLKSLKEYGQ 295 (308)
Q Consensus 257 ~a~~~----gv~-~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e 295 (308)
..... .+. .+...+ .|.++..|+.|+.++..|.+...
T Consensus 168 ~l~~~~~~~~l~~~l~~~l--~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLL--SDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp GG--HHHHHHHHHHHHHHH--TSS-HHHHHHHHHHHHHHHHHH-
T ss_pred hhcccchHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHCC
Confidence 11111 122 232223 24499999999999998876543
No 61
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=87.63 E-value=1.9 Score=35.60 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=49.3
Q ss_pred HHHHHhc-CCCCcHHHHHHhCcHHHHHHHHh--ccChhHHHHHHHHHHHHhc-ChhhHHHHHh
Q 044095 159 ELMRALC-LAESNRRVAVEAGAVGAVIEVVA--ELDAAAGERALAALELMCT-VAEGAEETRA 217 (308)
Q Consensus 159 a~l~aL~-~~~~Nr~~iV~aGAVp~LVeLL~--~~s~~~~E~ALAiL~~La~-~~eGr~aI~~ 217 (308)
.++++|| .+..|...+.+.|.|+.+++.-. +.++-+.|.|+-.+.+|+. ++|+++.|.+
T Consensus 8 rlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 8 RLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5667888 55789999999999999999864 4578899999999999998 4788887765
No 62
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=86.43 E-value=12 Score=37.84 Aligned_cols=28 Identities=11% Similarity=0.109 Sum_probs=20.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIY 248 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC 248 (308)
..+.|..+|.+.+..-+..|+.+|-.|.
T Consensus 148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~ 175 (410)
T TIGR02270 148 PGPALEAALTHEDALVRAAALRALGELP 175 (410)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhc
Confidence 4567777887778888888888876553
No 63
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.31 E-value=5.8 Score=44.53 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=87.5
Q ss_pred HHHHHHhcCCCCcHHHHHHh---CcHHHHHHHHhccChhHHHHHHHHHHHHhcCh-hhHHHHHhccCcHHHHHHHhcC-C
Q 044095 158 PELMRALCLAESNRRVAVEA---GAVGAVIEVVAELDAAAGERALAALELMCTVA-EGAEETRAHALAVPVMVTMMGQ-M 232 (308)
Q Consensus 158 ~a~l~aL~~~~~Nr~~iV~a---GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~-eGr~aI~~~~gaIp~LV~lLr~-g 232 (308)
.+.|.+|+..-+-..+.++. -.++..+..|.|....+.-.|+.++..++++= ..-..- -|+-.++.|+.+|.+ .
T Consensus 366 ~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~-~~e~l~~aL~~~ld~~~ 444 (1075)
T KOG2171|consen 366 HAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK-HHERLPPALIALLDSTQ 444 (1075)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH-HHHhccHHHHHHhcccC
Confidence 35555666443333333332 33455556667888899999999999999862 222222 335577899999987 5
Q ss_pred CHHHHHHHHHHHHHHhcCCcchhhccCCccHH-HHHHHHHhCCCCHHHHHHHHHHHHHHHhcCC
Q 044095 233 AGRGKEYAISVLAVIYGGGDQLVVAAPPEEVA-RAVELALQGNCTPRGRRKGTQLLKSLKEYGQ 295 (308)
Q Consensus 233 S~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~-~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e 295 (308)
..|-.-||+++|.+...........-.-.+++ .++.++++.+ ++..|+.|..-+....+..+
T Consensus 445 ~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 445 NVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS-KPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHh
Confidence 88999999999999977654333222223333 3444555553 89999999877766555443
No 64
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=86.04 E-value=6.1 Score=43.42 Aligned_cols=58 Identities=22% Similarity=0.095 Sum_probs=31.0
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 044095 180 VGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVI 247 (308)
Q Consensus 180 Vp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sL 247 (308)
++.|+.++.|.+......|+..|..+-..+ ..+..|+..|.+.+..-|..|+.+|..+
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 466666666666666666666665553211 1223445555555555555555555444
No 65
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=86.04 E-value=5.6 Score=37.90 Aligned_cols=91 Identities=10% Similarity=0.174 Sum_probs=65.0
Q ss_pred HHHHHhc-CCCCcHHHHHHhCcHHHHHHHHhc-cChhHHHHHHH-HHHHHhcChhhHHHHHhccCcHHHHHHHhcCC--C
Q 044095 159 ELMRALC-LAESNRRVAVEAGAVGAVIEVVAE-LDAAAGERALA-ALELMCTVAEGAEETRAHALAVPVMVTMMGQM--A 233 (308)
Q Consensus 159 a~l~aL~-~~~~Nr~~iV~aGAVp~LVeLL~~-~s~~~~E~ALA-iL~~La~~~eGr~aI~~~~gaIp~LV~lLr~g--S 233 (308)
.++.++| +++.-|....+..++..|+++|.. ......-.++. .+..|..++++...+-+ -+|+..+++++++. .
T Consensus 113 ~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~~llk~~~~~ 191 (257)
T PF08045_consen 113 RVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVCSLLKSKSTD 191 (257)
T ss_pred HHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHHHHHcccccc
Confidence 4555777 667788999999999999999943 33333333443 34455566777776655 67899999999973 5
Q ss_pred HHHHHHHHHHHHHHhcC
Q 044095 234 GRGKEYAISVLAVIYGG 250 (308)
Q Consensus 234 ~~~KE~AVa~L~sLC~~ 250 (308)
..-|=.++-.||-....
T Consensus 192 ~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 192 RELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHHhHHHHHHHHHHHcc
Confidence 66667788888877654
No 66
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=85.89 E-value=6.2 Score=43.23 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=84.0
Q ss_pred ChHHHHHHHHhHhccCCCCcccchHHHHHHHhCC--CCCCCCCcHH---HHHHHhcCCCCcHHHHHHhCcHHHHHHHHh-
Q 044095 115 SLQELFHLAELQLSSGSDSDRLAALYLLERSLLP--NPPSDQACQP---ELMRALCLAESNRRVAVEAGAVGAVIEVVA- 188 (308)
Q Consensus 115 ~~~~~f~l~~l~lss~~i~~~~~AI~lLV~LL~~--g~~~~k~~a~---a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~- 188 (308)
+.++.|.++.+- ...+.+..|+++|.. +..+++.... .+++..|..+.||..+++.|+|+.|++.|.
T Consensus 102 d~e~~~~~~~v~-------~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~ 174 (802)
T PF13764_consen 102 DPEQEFKIASVL-------AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNR 174 (802)
T ss_pred CHHHHHHHHHHh-------hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHH
Confidence 566677777533 125667777777653 3333442222 233345577999999999999999999995
Q ss_pred ---ccC----hhHHHHHHHHHHHHhcChhhHHHHH------h-------ccCcHHHHHHHhcCC----CHHHHHHHHHHH
Q 044095 189 ---ELD----AAAGERALAALELMCTVAEGAEETR------A-------HALAVPVMVTMMGQM----AGRGKEYAISVL 244 (308)
Q Consensus 189 ---~~s----~~~~E~ALAiL~~La~~~eGr~aI~------~-------~~gaIp~LV~lLr~g----S~~~KE~AVa~L 244 (308)
+.. .+..|..+.|++.|..... ..-+. . ...-|..+++.|... +.+-.+.-+.+|
T Consensus 175 ~l~~~~~~~~~~i~E~LL~IiE~ll~ea~-~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiL 253 (802)
T PF13764_consen 175 ALQANQNSSQAEIAEQLLEIIESLLSEAN-SSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARIL 253 (802)
T ss_pred HHhCccccccchHHHHHHHHHHHHHHHHh-hhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHh
Confidence 323 6889999999999987432 11111 0 011267777777652 456666667788
Q ss_pred HHHhcCCcch
Q 044095 245 AVIYGGGDQL 254 (308)
Q Consensus 245 ~sLC~~~~~~ 254 (308)
=.|+.++.++
T Consensus 254 P~Lt~G~~e~ 263 (802)
T PF13764_consen 254 PFLTYGNEEK 263 (802)
T ss_pred hHHhcCCHHH
Confidence 7887776543
No 67
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=84.65 E-value=6.9 Score=38.93 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=83.2
Q ss_pred hcCCCCcHHHHHHhCcHHHHHHHHh-c-cChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHH
Q 044095 164 LCLAESNRRVAVEAGAVGAVIEVVA-E-LDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAI 241 (308)
Q Consensus 164 L~~~~~Nr~~iV~aGAVp~LVeLL~-~-~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AV 241 (308)
+..+.+.-..+++.+.=-.++.-|. + ....-.|.|+.....+....+|...|-. +.|.+||.+.....++-|.-|+
T Consensus 52 ~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~--~vvralvaiae~~~D~lr~~cl 129 (371)
T PF14664_consen 52 LISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPR--GVVRALVAIAEHEDDRLRRICL 129 (371)
T ss_pred HHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCH--HHHHHHHHHHhCCchHHHHHHH
Confidence 3444445555555543222232232 2 2334566899999999988888877744 6889999999999999999999
Q ss_pred HHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHH-HHHHHHHH
Q 044095 242 SVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKG-TQLLKSLK 291 (308)
Q Consensus 242 a~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA-~~LLklL~ 291 (308)
.+|..|+..+.+.+ +..+|+..++..+.+| +-...+-. ..+|.+|.
T Consensus 130 etL~El~l~~P~lv--~~~gG~~~L~~~l~d~--~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 130 ETLCELALLNPELV--AECGGIRVLLRALIDG--SFSISESLLDTLLYLLD 176 (371)
T ss_pred HHHHHHHhhCHHHH--HHcCCHHHHHHHHHhc--cHhHHHHHHHHHHHHhC
Confidence 99999999887665 5578888887777765 43343333 35666654
No 68
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.35 E-value=14 Score=36.47 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=80.8
Q ss_pred chHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHH
Q 044095 137 AALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETR 216 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~ 216 (308)
..|+-|..|++.-.+... ++.++-||+..++-|..++.. -+..|+.++.+.....++....+|.+|+..+++..++-
T Consensus 44 ~~lk~l~qL~~~~~~~~~--a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 44 ALLKDLTQLLKDLDPAEP--AATALVNLSQKEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred hhHHHHHHHccCcccccH--HHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence 567778888876544222 345777999999999999988 88888888877777889999999999999988877665
Q ss_pred h-c-----cCcHHHHHHHhcCC-C-HHHHHHHHHHHHHHhcCCcc
Q 044095 217 A-H-----ALAVPVMVTMMGQM-A-GRGKEYAISVLAVIYGGGDQ 253 (308)
Q Consensus 217 ~-~-----~gaIp~LV~lLr~g-S-~~~KE~AVa~L~sLC~~~~~ 253 (308)
. . .+.+...+...+.+ + ...-+|-+.++.+|++..+.
T Consensus 121 ~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~g 165 (353)
T KOG2973|consen 121 TNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAG 165 (353)
T ss_pred HhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhh
Confidence 3 1 23333333344443 2 23447778899999886543
No 69
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=83.81 E-value=15 Score=36.60 Aligned_cols=116 Identities=11% Similarity=0.048 Sum_probs=76.1
Q ss_pred HHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcch
Q 044095 175 VEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQL 254 (308)
Q Consensus 175 V~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~ 254 (308)
+.-|.|..||.+..+.++....-|+++|.-|+-.+ -++..+.||+..|++.+.+|+-..-|..+.+++.+-.....+
T Consensus 105 ~~~~vvralvaiae~~~D~lr~~cletL~El~l~~---P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR 181 (371)
T PF14664_consen 105 IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN---PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTR 181 (371)
T ss_pred CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC---HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchh
Confidence 36678889999998888889999999999888742 234444789999999999987778888888888886554332
Q ss_pred hhccCCcc--HHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHhcCC
Q 044095 255 VVAAPPEE--VARAVELALQ-----GNCT---PRGRRKGTQLLKSLKEYGQ 295 (308)
Q Consensus 255 v~~a~~~g--v~~Ll~Lllq-----g~cS---~raKrKA~~LLklL~~~~e 295 (308)
. -+..| ...++.-..+ .... .+.+.-+..+..+|+.|..
T Consensus 182 ~--yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G 230 (371)
T PF14664_consen 182 K--YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG 230 (371)
T ss_pred h--hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc
Confidence 2 22222 1222211111 1112 3444555577778887765
No 70
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=82.98 E-value=4.7 Score=33.27 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCcc
Q 044095 195 GERALAALELMCT-VAEGAEETRAHALAVPVMVTMMG--QMAGRGKEYAISVLAVIYGGGDQ 253 (308)
Q Consensus 195 ~E~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~lLr--~gS~~~KE~AVa~L~sLC~~~~~ 253 (308)
+-..+.+|++|+- +.+....|.+ -+||+.|+.--. ...+--||.|+.++-+||.++.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~-~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRE-LGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHH
Confidence 3457889999997 5788888887 567999988654 46999999999999999998753
No 71
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=82.50 E-value=5.6 Score=36.11 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=65.7
Q ss_pred HhccChhHHHHHHHHHHHHhcChhhHHHHHhcc---------------CcHHHHHHHhcCC------CHHHHHHHHHHHH
Q 044095 187 VAELDAAAGERALAALELMCTVAEGAEETRAHA---------------LAVPVMVTMMGQM------AGRGKEYAISVLA 245 (308)
Q Consensus 187 L~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~---------------gaIp~LV~lLr~g------S~~~KE~AVa~L~ 245 (308)
+.+.+...++.++.+|.||+..++|...+.... ..|..||+.+-+| ....-+|.+.+|.
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 445567788999999999999999998666422 2577777777662 3345589999999
Q ss_pred HHhcCCcchh-hccCCccH---HHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Q 044095 246 VIYGGGDQLV-VAAPPEEV---ARAVELALQGNCTPRGRRKGTQLLKSLKEY 293 (308)
Q Consensus 246 sLC~~~~~~v-~~a~~~gv---~~Ll~Lllqg~cS~raKrKA~~LLklL~~~ 293 (308)
+|++....+. ..-...+. ..|+. ..+.. +.-=|+-++..+|.++-.
T Consensus 84 NlS~~~~gR~~~l~~~~~~~~l~kLl~-ft~~~-s~iRR~Gva~~IrNccFd 133 (192)
T PF04063_consen 84 NLSQLPEGRQFFLDPQRYDGPLQKLLP-FTEHK-SVIRRGGVAGTIRNCCFD 133 (192)
T ss_pred HhcCCHHHHHHHhCchhhhhHHHHHHH-HhccC-cHHHHHHHHHHHHHhhcc
Confidence 9998654322 11122223 23322 22221 333344455888877644
No 72
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=82.36 E-value=33 Score=33.12 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=76.7
Q ss_pred CCCCCcHH-HHHHHhcCCCCcHHHHHHhCcHHHHHHHHhcc-----ChhHHHHHHHHHHHHhcCh-hhHHHHHhccCcHH
Q 044095 151 PSDQACQP-ELMRALCLAESNRRVAVEAGAVGAVIEVVAEL-----DAAAGERALAALELMCTVA-EGAEETRAHALAVP 223 (308)
Q Consensus 151 ~~~k~~a~-a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~-----s~~~~E~ALAiL~~La~~~-eGr~aI~~~~gaIp 223 (308)
.+.+++.+ +++--++.+++-|...++|-.-=-|--+|... .+.+.=.+|.+++.|...+ .+.....-..+.||
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 34565543 55667889999999999998877777777522 2445556899999998864 34433334467999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhcCCc
Q 044095 224 VMVTMMGQMAGRGKEYAISVLAVIYGGGD 252 (308)
Q Consensus 224 ~LV~lLr~gS~~~KE~AVa~L~sLC~~~~ 252 (308)
..+++|..||+..|.-|..||--|-.++.
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~ 200 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDV 200 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999988866553
No 73
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=82.32 E-value=16 Score=41.77 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=74.5
Q ss_pred chHHHHHHHhCCCCC-CCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChh-hHHH
Q 044095 137 AALYLLERSLLPNPP-SDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAE-GAEE 214 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~-~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~e-Gr~a 214 (308)
+-.+++.-+|+..++ .-+..+-.++.-+..+.+-...|++.|....|+.+|.+. ....+.+|.+|..|++..+ |+++
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHH
Confidence 455666666664332 222111133333445555667889999999999999753 6678999999999999865 5555
Q ss_pred HHhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 044095 215 TRAHALAVPVMVTMMGQ-MAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 215 I~~~~gaIp~LV~lLr~-gS~~~KE~AVa~L~sLC~ 249 (308)
+ ++ |+..-+..++-. .+++.|-.|+..|..|--
T Consensus 1850 ~-~h-g~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1850 L-EH-GGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred H-hc-CchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 5 54 566666666654 688999999998888854
No 74
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=80.88 E-value=3.6 Score=39.16 Aligned_cols=74 Identities=14% Similarity=0.216 Sum_probs=56.0
Q ss_pred HHHHHhcCCCCcHHHHHHhCcHH-------HHHHHHh-ccChhHHHHHHHHHHHHhcChhhHH-HHHhccCcHHHHHHHh
Q 044095 159 ELMRALCLAESNRRVAVEAGAVG-------AVIEVVA-ELDAAAGERALAALELMCTVAEGAE-ETRAHALAVPVMVTMM 229 (308)
Q Consensus 159 a~l~aL~~~~~Nr~~iV~aGAVp-------~LVeLL~-~~s~~~~E~ALAiL~~La~~~eGr~-aI~~~~gaIp~LV~lL 229 (308)
.+|.-||..+.|..-+++.|--. .|+++|. .++..+.|-|+.+|.+|+.-+++.. +|+...++|..||.+|
T Consensus 146 EaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~Fi 225 (257)
T PF12031_consen 146 EALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFI 225 (257)
T ss_pred HHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHH
Confidence 44455778899988888777544 4444554 3467889999999999999877766 6666778999999999
Q ss_pred cCC
Q 044095 230 GQM 232 (308)
Q Consensus 230 r~g 232 (308)
+.+
T Consensus 226 E~a 228 (257)
T PF12031_consen 226 EDA 228 (257)
T ss_pred HHH
Confidence 764
No 75
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=80.10 E-value=18 Score=41.39 Aligned_cols=114 Identities=13% Similarity=0.110 Sum_probs=81.3
Q ss_pred hCcHHHHHHHHhc-cChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchh
Q 044095 177 AGAVGAVIEVVAE-LDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLV 255 (308)
Q Consensus 177 aGAVp~LVeLL~~-~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v 255 (308)
.|-.+-+..+|+. +.......||.++..+-...+....|+. .+..-.|+.+|- .-+..|+.++.+|++|.++..- .
T Consensus 1770 ig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~LL~lLH-S~PS~R~~vL~vLYAL~S~~~i-~ 1846 (2235)
T KOG1789|consen 1770 IGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTTLLTLLH-SQPSMRARVLDVLYALSSNGQI-G 1846 (2235)
T ss_pred hcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHHHHHHHh-cChHHHHHHHHHHHHHhcCcHH-H
Confidence 4777888888874 4567788999999999999999999988 456666666665 4455677899999999887542 2
Q ss_pred hccCCcc-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcC
Q 044095 256 VAAPPEE-VARAVELALQGNCTPRGRRKGTQLLKSLKEYG 294 (308)
Q Consensus 256 ~~a~~~g-v~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~ 294 (308)
.+++..| ...++..+-.. .+...|-.|++||..|....
T Consensus 1847 keA~~hg~l~yil~~~c~~-~~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1847 KEALEHGGLMYILSILCLT-NSDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHHhcCchhhhhHHHhcc-CcHHHHHHHHHHHHHhhhcc
Confidence 3455554 44444434333 27788888889998886543
No 76
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=79.25 E-value=24 Score=37.36 Aligned_cols=151 Identities=13% Similarity=0.154 Sum_probs=94.4
Q ss_pred chHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHH
Q 044095 137 AALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETR 216 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~ 216 (308)
.-++.|+.-+.+..=+.|..+-.++.++.-+..---..-....||.|.+.|-|...+..+.+...|..+++.-++.+ |.
T Consensus 254 ~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~ 332 (569)
T KOG1242|consen 254 LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQ 332 (569)
T ss_pred HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HH
Confidence 44555555555555556644445666665554333444556899999999999999999999999999999888877 43
Q ss_pred hccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHhcC
Q 044095 217 AHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQG--NCTPRGRRKGTQLLKSLKEYG 294 (308)
Q Consensus 217 ~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg--~cS~raKrKA~~LLklL~~~~ 294 (308)
. -|+.|++-|..-+.+. +.|+-.|..- ..|..+...-...++.++.+| +-+...||+++.+...+.+-.
T Consensus 333 ~---~ip~Lld~l~dp~~~~-~e~~~~L~~t-----tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv 403 (569)
T KOG1242|consen 333 K---IIPTLLDALADPSCYT-PECLDSLGAT-----TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV 403 (569)
T ss_pred H---HHHHHHHHhcCcccch-HHHHHhhcce-----eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh
Confidence 4 5889999888765333 3344444322 222111111111122223332 236778899999999998876
Q ss_pred CCC
Q 044095 295 QPD 297 (308)
Q Consensus 295 e~~ 297 (308)
+..
T Consensus 404 eDp 406 (569)
T KOG1242|consen 404 EDP 406 (569)
T ss_pred cCH
Confidence 543
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=79.01 E-value=2.9 Score=29.24 Aligned_cols=45 Identities=16% Similarity=0.058 Sum_probs=33.6
Q ss_pred HHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHH
Q 044095 161 MRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELM 205 (308)
Q Consensus 161 l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~L 205 (308)
+..|+........-....+++.|+.+|.|.+..+.+.|+.+|.+|
T Consensus 11 Lg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 11 LGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 334444555555556778899999999988888899998888765
No 78
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.92 E-value=14 Score=36.44 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=56.0
Q ss_pred hCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCcc
Q 044095 177 AGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQM-AGRGKEYAISVLAVIYGGGDQ 253 (308)
Q Consensus 177 aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~g-S~~~KE~AVa~L~sLC~~~~~ 253 (308)
.-.++.|.+|+.+... .+.|+.+|.+|+..++=|..|... .+..++.++-+- +.-+ +-...+|.||++.++.
T Consensus 43 ~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~--~~k~l~~~~~~p~~~la-d~~cmlL~NLs~~~~~ 115 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD--LLKVLMDMLTDPQSPLA-DLICMLLSNLSRDDDE 115 (353)
T ss_pred hhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH--HHHHHHHHhcCcccchH-HHHHHHHHHhccCchH
Confidence 4567889999987544 788999999999988888888773 778888888775 5555 4566788899887653
No 79
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.81 E-value=10 Score=32.23 Aligned_cols=79 Identities=11% Similarity=0.024 Sum_probs=54.4
Q ss_pred HhcCCCCcHHHHHHhCcHHHHHHHHhc-cChhHHHHHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHH
Q 044095 163 ALCLAESNRRVAVEAGAVGAVIEVVAE-LDAAAGERALAALELMCT-VAEGAEETRAHALAVPVMVTMMGQMAGRGKEYA 240 (308)
Q Consensus 163 aL~~~~~Nr~~iV~aGAVp~LVeLL~~-~s~~~~E~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~A 240 (308)
|.-...+|.-.+ +..|+++|.. .+.....-|+.=|..++. +++||..|.. -|+-..++++|....++-|.+|
T Consensus 33 Na~kf~~~~~~l-----lk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~d~eVr~eA 106 (119)
T PF11698_consen 33 NADKFEENNFEL-----LKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHEDPEVRYEA 106 (119)
T ss_dssp HSGGGSSGGGHH-----HHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-SSHHHHHHH
T ss_pred HHHHHHHcccHH-----HHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCCCHHHHHHH
Confidence 444445555444 4589999943 244444556666666776 5899998866 6788889999999999999999
Q ss_pred HHHHHHH
Q 044095 241 ISVLAVI 247 (308)
Q Consensus 241 Va~L~sL 247 (308)
+-++..|
T Consensus 107 L~avQkl 113 (119)
T PF11698_consen 107 LLAVQKL 113 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887665
No 80
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=78.39 E-value=29 Score=35.13 Aligned_cols=58 Identities=16% Similarity=0.036 Sum_probs=40.7
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVI 247 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sL 247 (308)
+.+.|+.+|.+.+..+...|+.+|..|.. ..+++.|+..+.+-.+.-|.-|+..|..+
T Consensus 148 ~~~~L~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 148 PGPALEAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 35566666666666666666666665542 34677788888888888998888888666
No 81
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=77.86 E-value=23 Score=37.22 Aligned_cols=106 Identities=18% Similarity=0.221 Sum_probs=70.9
Q ss_pred HHHHHHhCCCCCCCC-Cc------HHHHHHHhcCCCC--cHHHHHHhCcHHHHHHHHhcc-Ch------hHHHHHHHHHH
Q 044095 140 YLLERSLLPNPPSDQ-AC------QPELMRALCLAES--NRRVAVEAGAVGAVIEVVAEL-DA------AAGERALAALE 203 (308)
Q Consensus 140 ~lLV~LL~~g~~~~k-~~------a~a~l~aL~~~~~--Nr~~iV~aGAVp~LVeLL~~~-s~------~~~E~ALAiL~ 203 (308)
+.|=+||+.+.-.+. .. .-++++..|..++ .+..|| ..||.|++++..+ +. .+.|++-.-|.
T Consensus 59 ~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~ 136 (698)
T KOG2611|consen 59 HFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLY 136 (698)
T ss_pred chHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHH
Confidence 556688886553222 11 1245556776654 355565 4699999999743 33 38999999999
Q ss_pred HHhcChhhHHHHHhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHh
Q 044095 204 LMCTVAEGAEETRAHALAVPVMVTMMGQ-MAGRGKEYAISVLAVIY 248 (308)
Q Consensus 204 ~La~~~eGr~aI~~~~gaIp~LV~lLr~-gS~~~KE~AVa~L~sLC 248 (308)
..++++.|...+.+ .|+|+.+.++-.- +-.-..+.|+-+|+.+.
T Consensus 137 ~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~ 181 (698)
T KOG2611|consen 137 LVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHDMALALKVLLLLV 181 (698)
T ss_pred HHhcCCchhHHHHh-cCchHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence 99999999999988 7899999876543 22223345555555543
No 82
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=77.48 E-value=4.7 Score=36.00 Aligned_cols=74 Identities=11% Similarity=0.074 Sum_probs=46.7
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHhcChh-hHHHHHh---ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcc
Q 044095 180 VGAVIEVVAELDAAAGERALAALELMCTVAE-GAEETRA---HALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQ 253 (308)
Q Consensus 180 Vp~LVeLL~~~s~~~~E~ALAiL~~La~~~e-Gr~aI~~---~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~ 253 (308)
+..+...+.+.+....+.++..|..+...-. ....+.. ....++.|++.|.+.....|+.|-.+++.+...-++
T Consensus 133 ~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 133 LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 3445555556778888888888888766433 1111111 123678888999999999999999999999765443
No 83
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.79 E-value=5.5 Score=25.12 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 044095 222 VPVMVTMMGQMAGRGKEYAISVLAVIYGG 250 (308)
Q Consensus 222 Ip~LV~lLr~gS~~~KE~AVa~L~sLC~~ 250 (308)
+|.+++++.+.+.+-|+.|+..|..|+..
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999999753
No 84
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.77 E-value=44 Score=34.69 Aligned_cols=178 Identities=16% Similarity=0.143 Sum_probs=105.7
Q ss_pred ChHHHHHHHHhHhccCC-----CC---------cccchHHHHHHHhCCCCCCCCCcHHHHHHHhc---CCCCc-------
Q 044095 115 SLQELFHLAELQLSSGS-----DS---------DRLAALYLLERSLLPNPPSDQACQPELMRALC---LAESN------- 170 (308)
Q Consensus 115 ~~~~~f~l~~l~lss~~-----i~---------~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~---~~~~N------- 170 (308)
+-.|.|.=|+++|.... -. ...++++.|++||-..+...-...-+++.-|. ..+++
T Consensus 89 dnPeKFmeSE~dLhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevL 168 (536)
T KOG2734|consen 89 DNPEKFMESEVDLHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVL 168 (536)
T ss_pred CCHHHHHHhhccHHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHH
Confidence 45678888888887653 11 22356677777777554322111114444444 11222
Q ss_pred HHHHHHhCcHHHHHHHHhcc------ChhHHHHHHHHHHHHhcCh-hhHHHHHhccCcHHHHHHHhcC-C-CHHHHHHHH
Q 044095 171 RRVAVEAGAVGAVIEVVAEL------DAAAGERALAALELMCTVA-EGAEETRAHALAVPVMVTMMGQ-M-AGRGKEYAI 241 (308)
Q Consensus 171 r~~iV~aGAVp~LVeLL~~~------s~~~~E~ALAiL~~La~~~-eGr~aI~~~~gaIp~LV~lLr~-g-S~~~KE~AV 241 (308)
...+|+.+.++.||+-+.-. ...-+...++++++|.... +-...++++ |.+..|+..+.. + -+.+|.||.
T Consensus 169 idaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll~WLL~rl~~k~~f~aNk~Yas 247 (536)
T KOG2734|consen 169 IDALVDGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLLSWLLKRLKGKAAFDANKQYAS 247 (536)
T ss_pred HHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHHHHHHHHHhcccCcchhHHHHH
Confidence 34668889999999888522 2344667899999999864 555556664 777887776654 3 578999999
Q ss_pred HHHHHHhcCCcchh-hccCCccHHHHHHH---H-HhCCCCHHHHHHHHHHHHHHHhc
Q 044095 242 SVLAVIYGGGDQLV-VAAPPEEVARAVEL---A-LQGNCTPRGRRKGTQLLKSLKEY 293 (308)
Q Consensus 242 a~L~sLC~~~~~~v-~~a~~~gv~~Ll~L---l-lqg~cS~raKrKA~~LLklL~~~ 293 (308)
-||..+-.++++.+ ....-.|+-.++.- . .++-.+..-.++-..|...|+..
T Consensus 248 EiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~ 304 (536)
T KOG2734|consen 248 EILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSL 304 (536)
T ss_pred HHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHH
Confidence 99999988776432 22223344322221 1 12222344456666666666644
No 85
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=76.56 E-value=19 Score=36.60 Aligned_cols=91 Identities=8% Similarity=-0.014 Sum_probs=67.5
Q ss_pred HHHHhcCCCCcHHHHHHhCcHHHHHHHH---------h-ccChhHHHHHHHHHHHHhcC-hhhHHHHHhccCcHHHHHHH
Q 044095 160 LMRALCLAESNRRVAVEAGAVGAVIEVV---------A-ELDAAAGERALAALELMCTV-AEGAEETRAHALAVPVMVTM 228 (308)
Q Consensus 160 ~l~aL~~~~~Nr~~iV~aGAVp~LVeLL---------~-~~s~~~~E~ALAiL~~La~~-~eGr~aI~~~~gaIp~LV~l 228 (308)
+++-|+.++.|-..++...++..|+.+- . +.+.....+|+..|.|+--. +.+|....+ .|....+++.
T Consensus 4 ~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~-~~~~~~l~~~ 82 (446)
T PF10165_consen 4 TLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVD-LGLAEKLCER 82 (446)
T ss_pred HHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHH
Confidence 4556677777777777777777777776 2 34677888999999998874 788877776 6788999999
Q ss_pred hcCC-----CHHHHHHHHHHHHHHhcCC
Q 044095 229 MGQM-----AGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 229 Lr~g-----S~~~KE~AVa~L~sLC~~~ 251 (308)
|... +...+=....+|+-++-..
T Consensus 83 Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~ 110 (446)
T PF10165_consen 83 LKNYSDSSQPSDVEFLDSRLLFLLTALR 110 (446)
T ss_pred HHcccccCCChhHHHHHHHHHHHHhcCC
Confidence 9986 5566666667777666544
No 86
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=76.02 E-value=5.3 Score=25.18 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=24.5
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHhc
Q 044095 180 VGAVIEVVAELDAAAGERALAALELMCT 207 (308)
Q Consensus 180 Vp~LVeLL~~~s~~~~E~ALAiL~~La~ 207 (308)
+|.|++++.|.+.+..+.|+..|..++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999998875
No 87
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=74.56 E-value=7.5 Score=31.43 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=42.5
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHH-HHHHHHHhCCCCHHHHHHHHHHHHHH
Q 044095 220 LAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVA-RAVELALQGNCTPRGRRKGTQLLKSL 290 (308)
Q Consensus 220 gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~-~Ll~Lllqg~cS~raKrKA~~LLklL 290 (308)
-.|+.++..+.+...|-|.+|.-.|++|++..++.+.. --..+. .|..++ .|-.++.|.-|.-|-++|
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~--~D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLS--ADPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--cCCchhHHHHHHHHHHHh
Confidence 36888888999999999999999999999865543322 122244 333333 332455544444444444
No 88
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=73.92 E-value=57 Score=34.00 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=73.3
Q ss_pred hcCCCCcHHHHHHhC-cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcC-----CCHHHH
Q 044095 164 LCLAESNRRVAVEAG-AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQ-----MAGRGK 237 (308)
Q Consensus 164 L~~~~~Nr~~iV~aG-AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~-----gS~~~K 237 (308)
|.+.++.-...-+.| ....+++-+++.+.+..-.+.-++.+++..++...-+.+ .+.+.-|+++|.+ |.-+-+
T Consensus 300 lltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~q 378 (604)
T KOG4500|consen 300 LLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQ 378 (604)
T ss_pred hhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhH
Confidence 456667777777777 677777777777778888888889999999999998888 5788999998865 455555
Q ss_pred HHHHHHHHHHhcCCcchhhccCCccH
Q 044095 238 EYAISVLAVIYGGGDQLVVAAPPEEV 263 (308)
Q Consensus 238 E~AVa~L~sLC~~~~~~v~~a~~~gv 263 (308)
-.|.++|-++..--.++.. ....|+
T Consensus 379 hA~lsALRnl~IPv~nka~-~~~aGv 403 (604)
T KOG4500|consen 379 HACLSALRNLMIPVSNKAH-FAPAGV 403 (604)
T ss_pred HHHHHHHHhccccCCchhh-ccccch
Confidence 6677999999876555543 344554
No 89
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=71.77 E-value=6.2 Score=37.47 Aligned_cols=8 Identities=0% Similarity=-0.110 Sum_probs=4.1
Q ss_pred Cccccccc
Q 044095 14 PLFSCGFF 21 (308)
Q Consensus 14 ~~~~~~~~ 21 (308)
....||+|
T Consensus 149 ~~~~~~~l 156 (253)
T PF05308_consen 149 NSTTPDLL 156 (253)
T ss_pred cccCcccc
Confidence 44555554
No 90
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.77 E-value=7.9 Score=41.67 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=61.5
Q ss_pred HHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 044095 171 RRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGG 250 (308)
Q Consensus 171 r~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~ 250 (308)
-..|+..||--++|.=|.|.--++.+.|++-|..|+...-+= . ..++-.||+++.+--+.-|..|+.+|-.|..+
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F---A--~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF---A--VRALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc---H--HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999988877788889999999999864332 1 13678899999998899999999999999865
No 91
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=71.56 E-value=22 Score=37.25 Aligned_cols=87 Identities=17% Similarity=0.128 Sum_probs=66.0
Q ss_pred cCCCCcHHHHHHhCcHHHHHHHHhcc-ChhHHHHHHHHHHHHhcCh-hhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHH
Q 044095 165 CLAESNRRVAVEAGAVGAVIEVVAEL-DAAAGERALAALELMCTVA-EGAEETRAHALAVPVMVTMMGQMAGRGKEYAIS 242 (308)
Q Consensus 165 ~~~~~Nr~~iV~aGAVp~LVeLL~~~-s~~~~E~ALAiL~~La~~~-eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa 242 (308)
|+..+||.++++.| ..+++.+-... ..++....+.+|++|-.+. |-...+.+ .|+|-.++---++.-+.--.||+-
T Consensus 209 ~~~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~Lva-a~~lD~vl~~~rRt~P~lLRH~AL 286 (832)
T KOG3678|consen 209 ILVAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQRLVA-AGGLDAVLYWCRRTDPALLRHCAL 286 (832)
T ss_pred HHhhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHHHHh-hcccchheeecccCCHHHHHHHHH
Confidence 45678999999998 66666665432 3566667889999998874 55666666 678888877778877888889999
Q ss_pred HHHHHhcCCcc
Q 044095 243 VLAVIYGGGDQ 253 (308)
Q Consensus 243 ~L~sLC~~~~~ 253 (308)
+|.+...++..
T Consensus 287 AL~N~~L~~~~ 297 (832)
T KOG3678|consen 287 ALGNCALHGGQ 297 (832)
T ss_pred Hhhhhhhhchh
Confidence 99998877754
No 92
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=71.51 E-value=24 Score=36.25 Aligned_cols=10 Identities=40% Similarity=0.770 Sum_probs=5.8
Q ss_pred ccCCCCCCCC
Q 044095 28 VLSPTNSHSP 37 (308)
Q Consensus 28 ~~~~~~~~~~ 37 (308)
+.+||-.++.
T Consensus 299 ~~rPt~pPP~ 308 (518)
T KOG1830|consen 299 VVRPTQPPPP 308 (518)
T ss_pred CCCCCCCCCC
Confidence 5666665543
No 93
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=71.13 E-value=47 Score=32.11 Aligned_cols=110 Identities=13% Similarity=0.068 Sum_probs=55.1
Q ss_pred HHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHh-ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--CcchhhccC
Q 044095 183 VIEVVAELDAAAGERALAALELMCTVAEGAEETRA-HALAVPVMVTMMGQMAGRGKEYAISVLAVIYGG--GDQLVVAAP 259 (308)
Q Consensus 183 LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~-~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~--~~~~v~~a~ 259 (308)
.++.|.+.+....|.+|..|..+-...=-.+.|.. ....+..+.+.|++|+.+.+..|+.++-.||.. .+....++.
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~ 127 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF 127 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH
Confidence 34444555566677777776666543211222221 123567777788888766666676666666654 222222222
Q ss_pred CccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 044095 260 PEEVARAVELALQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 260 ~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~ 292 (308)
..-.+.|...+..+.-+...|..+..-|-++.-
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f 160 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTF 160 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence 222344444444442234444444444444443
No 94
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.68 E-value=27 Score=38.10 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=66.0
Q ss_pred HHHHH---HhcCC-CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhc---
Q 044095 158 PELMR---ALCLA-ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMG--- 230 (308)
Q Consensus 158 ~a~l~---aL~~~-~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr--- 230 (308)
++++. +|..+ +.-...+++ +|..|-++|.+.+.+..-.|+.-+..|++++...+++..| ...++..|+
T Consensus 307 naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d~Ii~sLkter 381 (938)
T KOG1077|consen 307 NAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QDTIINSLKTER 381 (938)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HHHHHHHhcccc
Confidence 46665 45543 445555554 5788999999888899999999999999999889999886 566777776
Q ss_pred CCCHHHHHHHHHHHHHHhcCC
Q 044095 231 QMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 231 ~gS~~~KE~AVa~L~sLC~~~ 251 (308)
+.|-| ..||..|+.+|..+
T Consensus 382 DvSir--rravDLLY~mcD~~ 400 (938)
T KOG1077|consen 382 DVSIR--RRAVDLLYAMCDVS 400 (938)
T ss_pred chHHH--HHHHHHHHHHhchh
Confidence 34555 45999999999754
No 95
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=70.39 E-value=8.7 Score=36.51 Aligned_cols=10 Identities=20% Similarity=-0.197 Sum_probs=5.4
Q ss_pred Cccccccccc
Q 044095 14 PLFSCGFFCH 23 (308)
Q Consensus 14 ~~~~~~~~~~ 23 (308)
.+|+++.+..
T Consensus 154 ~~l~~~~~~~ 163 (253)
T PF05308_consen 154 DLLSLSDSPV 163 (253)
T ss_pred cccccccCCc
Confidence 3555665544
No 96
>PHA03247 large tegument protein UL36; Provisional
Probab=69.29 E-value=24 Score=43.36 Aligned_cols=10 Identities=30% Similarity=0.292 Sum_probs=4.6
Q ss_pred HHHHHHHHhc
Q 044095 240 AISVLAVIYG 249 (308)
Q Consensus 240 AVa~L~sLC~ 249 (308)
|+++|..-|+
T Consensus 3110 alAlLi~ACr 3119 (3151)
T PHA03247 3110 ALAVLIEACR 3119 (3151)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 97
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=68.92 E-value=15 Score=31.86 Aligned_cols=126 Identities=13% Similarity=0.066 Sum_probs=71.7
Q ss_pred ChHHHHHHHHhHhccCCCCcccchHHHHHHHhC-CCCCCCCCcHHHHHHHhcCC-CCcHHHH-HHhCcHHHHHHHHh--c
Q 044095 115 SLQELFHLAELQLSSGSDSDRLAALYLLERSLL-PNPPSDQACQPELMRALCLA-ESNRRVA-VEAGAVGAVIEVVA--E 189 (308)
Q Consensus 115 ~~~~~f~l~~l~lss~~i~~~~~AI~lLV~LL~-~g~~~~k~~a~a~l~aL~~~-~~Nr~~i-V~aGAVp~LVeLL~--~ 189 (308)
+-+++..++++. .+. ..+..+.+.-.+..+. ++.......+-.++..|-.. .+--..+ ...|.++.+++++. .
T Consensus 22 r~~a~v~l~k~l-~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~ 99 (157)
T PF11701_consen 22 RSHALVILSKLL-DAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKS 99 (157)
T ss_dssp HHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHH-HHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhccc
Confidence 456666677663 111 1111234444444433 33332221111333343322 3334444 35799999999998 5
Q ss_pred cChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCC-HH-HHHHHHHHH
Q 044095 190 LDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMA-GR-GKEYAISVL 244 (308)
Q Consensus 190 ~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS-~~-~KE~AVa~L 244 (308)
.+......++.+|..=|.+++.|..|.. .+++.|-++++... +. -|..|+-+|
T Consensus 100 ~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 100 KDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp S-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHH
Confidence 5566666677777777778888888877 47899999997654 33 355555554
No 98
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=68.77 E-value=77 Score=33.49 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=64.7
Q ss_pred CcHHHHHHhCcHHHHHHHHhcc--C-----hhHHHHHHHHHHHHhcChhh--HHHHHhccCcHHHHHHHhcCCC-HH---
Q 044095 169 SNRRVAVEAGAVGAVIEVVAEL--D-----AAAGERALAALELMCTVAEG--AEETRAHALAVPVMVTMMGQMA-GR--- 235 (308)
Q Consensus 169 ~Nr~~iV~aGAVp~LVeLL~~~--s-----~~~~E~ALAiL~~La~~~eG--r~aI~~~~gaIp~LV~lLr~gS-~~--- 235 (308)
.||.++-++=..+.|=.||+.+ . .....-++++|+-.|..+|= -..|.+ .||.|.++|..+- ..
T Consensus 47 ~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~---~IP~llev~~~~~d~d~e~ 123 (698)
T KOG2611|consen 47 LNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVS---RIPLLLEVMSKGIDTDYED 123 (698)
T ss_pred hhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHH---hhhHHHHHHHhcCCCchhh
Confidence 5899999998899999999732 2 33455688899998887653 234444 6999999998752 22
Q ss_pred ---HHHHHHHHHHHHhcCCcchhhccCCccHH
Q 044095 236 ---GKEYAISVLAVIYGGGDQLVVAAPPEEVA 264 (308)
Q Consensus 236 ---~KE~AVa~L~sLC~~~~~~v~~a~~~gv~ 264 (308)
--|+|-..|+.++.....-...+..+|+.
T Consensus 124 ~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~ 155 (698)
T KOG2611|consen 124 NLIMLEDCYECLYLVATAEAGLMTLIASGGLR 155 (698)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHhcCchH
Confidence 46889999999988754433333344443
No 99
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=68.06 E-value=52 Score=32.84 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=64.4
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhcc
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAA 258 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a 258 (308)
++..|..=|.+.+...+..||..|.+++. +| +.. ..++.+.++|.+.++--|..|+.+|+.++..+.+.+..
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-~~----~~~--~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~- 151 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT-PE----MAE--PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED- 151 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-HH----HHH--HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG-
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-cc----hhh--HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH-
Confidence 55566666666677788889999999884 22 223 24678888888889999999999999998766543311
Q ss_pred CCccHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 044095 259 PPEEVARAVELALQGNCTPRGRRKGTQLLKSL 290 (308)
Q Consensus 259 ~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL 290 (308)
+-+..+..++.+. +...+.-|..+|..+
T Consensus 152 --~~~~~l~~lL~d~--~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 152 --ELIPKLKQLLSDK--DPSVVSAALSLLSEI 179 (526)
T ss_dssp --GHHHHHHHHTTHS--SHHHHHHHHHHHHHH
T ss_pred --HHHHHHhhhccCC--cchhHHHHHHHHHHH
Confidence 1133443334333 566666666666555
No 100
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.10 E-value=24 Score=39.82 Aligned_cols=150 Identities=13% Similarity=0.119 Sum_probs=91.1
Q ss_pred chHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcC--hhhHHH
Q 044095 137 AALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTV--AEGAEE 214 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~--~eGr~a 214 (308)
+..|.+++++..+..-.+.-+-.++..+...-+--..=...+.++.+++.+.+.+.+....|..-+..+|.+ +..+..
T Consensus 844 ~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v 923 (1075)
T KOG2171|consen 844 NFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPV 923 (1075)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHH
Confidence 678888888887763222212222222221111111123346688999999999999999999999999874 233444
Q ss_pred HHhccCcHHHHHHHhcC------CCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044095 215 TRAHALAVPVMVTMMGQ------MAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLK 288 (308)
Q Consensus 215 I~~~~gaIp~LV~lLr~------gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLk 288 (308)
+.. ..+.|+.++.. -..+.+|||++++..+|.+....+. +..-++.++..+ - .-..++-+.-+..
T Consensus 924 ~~~---~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~~~~i~--vdqvl~~~l~~L--P--l~~D~eEa~~iy~ 994 (1075)
T KOG2171|consen 924 CSE---ALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFNPNRIP--VDQVLPAWLSWL--P--LKEDKEEAVPIYT 994 (1075)
T ss_pred HHH---HHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhCCccCc--HHHHHHHHHHhC--C--CccchhhhhhHHH
Confidence 444 57889998875 3567899999999999998765441 223233332222 1 2233455665555
Q ss_pred HHHhcCC
Q 044095 289 SLKEYGQ 295 (308)
Q Consensus 289 lL~~~~e 295 (308)
+|.+-.|
T Consensus 995 ~l~~L~e 1001 (1075)
T KOG2171|consen 995 FLSDLYE 1001 (1075)
T ss_pred HHHHHHH
Confidence 5555443
No 101
>PTZ00429 beta-adaptin; Provisional
Probab=66.94 E-value=40 Score=36.84 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=48.9
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCc
Q 044095 180 VGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGD 252 (308)
Q Consensus 180 Vp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~ 252 (308)
+..|.+.|.|.+..+...|+-.+..|-.... +.+ ...+.++.|.++|.+......-+|+.+|..++..+.
T Consensus 142 ~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv-~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~ 211 (746)
T PTZ00429 142 LEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLF-YQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGS 211 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccc-cccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCc
Confidence 4445556667777776666655555543221 222 335678999999999999999999999999987653
No 102
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=66.72 E-value=1.2e+02 Score=28.68 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=27.5
Q ss_pred cCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044095 219 ALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 219 ~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~ 251 (308)
..+++.+.+.++.....-+..|+..|..+....
T Consensus 179 ~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 179 PEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 458899999999888888888999988887663
No 103
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.70 E-value=66 Score=28.03 Aligned_cols=110 Identities=13% Similarity=0.052 Sum_probs=63.0
Q ss_pred HHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhc-cCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCc---chh
Q 044095 181 GAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAH-ALAVPVMVTMMGQ-MAGRGKEYAISVLAVIYGGGD---QLV 255 (308)
Q Consensus 181 p~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~-~gaIp~LV~lLr~-gS~~~KE~AVa~L~sLC~~~~---~~v 255 (308)
..+..+|.+.+....-.++.++..++.. .+.+.+.++ .--+..|+.+|++ .....+|.|+.+|-.|+..-+ +-.
T Consensus 28 ~ri~~LL~s~~~~~rw~G~~Ll~~~~~~-~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~ 106 (165)
T PF08167_consen 28 TRINSLLQSKSAYSRWAGLCLLKVTVEQ-CSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLT 106 (165)
T ss_pred HHHHHHhCCCChhhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchH
Confidence 3456667666666666677777666642 225555442 2357788888887 477889999999999987443 223
Q ss_pred hccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 044095 256 VAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 256 ~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~ 291 (308)
+++...-++.++..+++=.......+.+.+.|..|-
T Consensus 107 Rei~tp~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 107 REIATPNLPKFIQSLLQLLQDSSCPETALDALATLL 142 (165)
T ss_pred HHHhhccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 343333344333333221001344556665555443
No 104
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=64.89 E-value=26 Score=27.12 Aligned_cols=55 Identities=15% Similarity=0.165 Sum_probs=43.4
Q ss_pred HhcCCCCcHHHHHHhCcHHHHHHHHhc-cChhHHHHHHHHHHHHhcChhhHHHHHh
Q 044095 163 ALCLAESNRRVAVEAGAVGAVIEVVAE-LDAAAGERALAALELMCTVAEGAEETRA 217 (308)
Q Consensus 163 aL~~~~~Nr~~iV~aGAVp~LVeLL~~-~s~~~~E~ALAiL~~La~~~eGr~aI~~ 217 (308)
+++..+.--..+-+.++|+.++++... ..-.++-.|..+|..++++.+|.+.+.+
T Consensus 13 hIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 13 HIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred hHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 445555555666677999999999863 3456777899999999999999998865
No 105
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=63.49 E-value=1.4e+02 Score=30.72 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=95.5
Q ss_pred HHHHHhCCCC-CCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhc--cChhHHHHHHHHHHHHhcChhhHHHHHh
Q 044095 141 LLERSLLPNP-PSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAE--LDAAAGERALAALELMCTVAEGAEETRA 217 (308)
Q Consensus 141 lLV~LL~~g~-~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~--~s~~~~E~ALAiL~~La~~~eGr~aI~~ 217 (308)
.|..++..++ ......+...|..+...++-|..+|.+..|..|+..|.+ .+-.+.-..+--+..|.-.+...+-+ .
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~-~ 238 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKL-K 238 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHH-h
Confidence 3444455533 222322344666788999999999999999999999942 23445556677777777766666556 5
Q ss_pred ccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCcch------hhccCCccHHHHHHHHHhCCCCHH-HHHHHHHHHHH
Q 044095 218 HALAVPVMVTMMGQM-AGRGKEYAISVLAVIYGGGDQL------VVAAPPEEVARAVELALQGNCTPR-GRRKGTQLLKS 289 (308)
Q Consensus 218 ~~gaIp~LV~lLr~g-S~~~KE~AVa~L~sLC~~~~~~------v~~a~~~gv~~Ll~Lllqg~cS~r-aKrKA~~LLkl 289 (308)
..+.|+.|++++++. -++-..-+++++.+++..+.++ ....+..++...+..+.+++-++. ..+.-.-|-+.
T Consensus 239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~ 318 (442)
T KOG2759|consen 239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEK 318 (442)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 478999999999974 5666677889999998876321 112334556666666666654443 33333344444
Q ss_pred H
Q 044095 290 L 290 (308)
Q Consensus 290 L 290 (308)
|
T Consensus 319 L 319 (442)
T KOG2759|consen 319 L 319 (442)
T ss_pred H
Confidence 4
No 106
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=61.46 E-value=1.2e+02 Score=27.76 Aligned_cols=135 Identities=19% Similarity=0.132 Sum_probs=77.4
Q ss_pred CChHHHHHHHHhHhccCCCCc----ccchHHHHHHHhCCCCCCCCCcHH-HHHHHhcCCCCcHHHHHHhC--cHHHHHHH
Q 044095 114 TSLQELFHLAELQLSSGSDSD----RLAALYLLERSLLPNPPSDQACQP-ELMRALCLAESNRRVAVEAG--AVGAVIEV 186 (308)
Q Consensus 114 ~~~~~~f~l~~l~lss~~i~~----~~~AI~lLV~LL~~g~~~~k~~a~-a~l~aL~~~~~Nr~~iV~aG--AVp~LVeL 186 (308)
.+.+|+-+|..+--.....+. ...-+..+..++..=+. ....+. +++|-+..++..-......+ ....+..+
T Consensus 36 l~~~el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~-~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~ 114 (268)
T PF08324_consen 36 LSEEELESLESLLSALKSTSAYHSDLSAWLILLLKILLSWPP-ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTL 114 (268)
T ss_dssp S-HHHHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-C-CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCC-ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHH
Confidence 356777777665553333221 22344555555554433 333333 88887777766544444432 24555555
Q ss_pred Hhc----cChhHHHHHHHHHHHHhcChhhHHHHHhccC-cHHHHHHHhcCCC----HHHHHHHHHHHHHHhc
Q 044095 187 VAE----LDAAAGERALAALELMCTVAEGAEETRAHAL-AVPVMVTMMGQMA----GRGKEYAISVLAVIYG 249 (308)
Q Consensus 187 L~~----~s~~~~E~ALAiL~~La~~~eGr~aI~~~~g-aIp~LV~lLr~gS----~~~KE~AVa~L~sLC~ 249 (308)
+.. ......=.++.+|.||-.+..|+..+..+.. .|-..+..+.... ...+--++.+++|++.
T Consensus 115 ~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv 186 (268)
T PF08324_consen 115 ISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSV 186 (268)
T ss_dssp HHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 543 2455556799999999999999999998765 4555555444442 3444445567777765
No 107
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=61.21 E-value=88 Score=31.81 Aligned_cols=73 Identities=16% Similarity=0.252 Sum_probs=56.2
Q ss_pred HHHHHhc----CCCCcHHHHHHhCcHHHHHHHHhcc-----ChhHHHHHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHH
Q 044095 159 ELMRALC----LAESNRRVAVEAGAVGAVIEVVAEL-----DAAAGERALAALELMCT-VAEGAEETRAHALAVPVMVTM 228 (308)
Q Consensus 159 a~l~aL~----~~~~Nr~~iV~aGAVp~LVeLL~~~-----s~~~~E~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~l 228 (308)
.+++-|| ..+.-|...++.|.+..|++.|... ..+..-..+.+|..+.. ..+.+..+....+++..|++.
T Consensus 51 EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~ 130 (446)
T PF10165_consen 51 EALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEA 130 (446)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHH
Confidence 4555444 5567789999999999999999865 45666668888877775 578888888866788988887
Q ss_pred hcC
Q 044095 229 MGQ 231 (308)
Q Consensus 229 Lr~ 231 (308)
|.+
T Consensus 131 L~~ 133 (446)
T PF10165_consen 131 LER 133 (446)
T ss_pred HHH
Confidence 764
No 108
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=60.73 E-value=11 Score=38.52 Aligned_cols=9 Identities=11% Similarity=0.187 Sum_probs=3.7
Q ss_pred CCCCCCCCC
Q 044095 40 PLTPEEPPP 48 (308)
Q Consensus 40 ~~~~~~~~~ 48 (308)
.++....|.
T Consensus 226 ~~~~~s~~g 234 (480)
T KOG2675|consen 226 SPKAASAPG 234 (480)
T ss_pred CcCcccCCC
Confidence 344443343
No 109
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=60.43 E-value=50 Score=33.37 Aligned_cols=132 Identities=20% Similarity=0.204 Sum_probs=79.0
Q ss_pred HHHHHHHhHhccCCCCcccchHHHHHHHhCCCCC-CCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHH
Q 044095 118 ELFHLAELQLSSGSDSDRLAALYLLERSLLPNPP-SDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGE 196 (308)
Q Consensus 118 ~~f~l~~l~lss~~i~~~~~AI~lLV~LL~~g~~-~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E 196 (308)
|||+++....|-+. +.|-+-+|..-|+...+ --...--.++..|.-.+--|..+...|.|..+-.++...+.+--|
T Consensus 197 eifSiSpesaneck---kSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfe 273 (524)
T KOG4413|consen 197 EIFSISPESANECK---KSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFE 273 (524)
T ss_pred HHHhcCHHHHhHhh---hhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHH
Confidence 67777777666543 45556666655653221 111111366667887777899999999999999999754433333
Q ss_pred --HHHHHHHHHhc----ChhhHHHHHh-ccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCc
Q 044095 197 --RALAALELMCT----VAEGAEETRA-HALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGD 252 (308)
Q Consensus 197 --~ALAiL~~La~----~~eGr~aI~~-~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~ 252 (308)
+++-....+-. .+---++|++ ..-+|....+++....+...|.|+.+|-.|-++-.
T Consensus 274 kfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 274 KFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred HHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence 34444333332 2212223332 11234555566666677888999999998876543
No 110
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=60.13 E-value=66 Score=30.35 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=12.3
Q ss_pred cHHHHHHHhcC-CCHHHHHHHHHHHHHH
Q 044095 221 AVPVMVTMMGQ-MAGRGKEYAISVLAVI 247 (308)
Q Consensus 221 aIp~LV~lLr~-gS~~~KE~AVa~L~sL 247 (308)
+++.|++.|.. .....|..|+.+|..+
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 44444554442 4444444444444433
No 111
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=60.06 E-value=23 Score=39.00 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=45.8
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCcc--H-HHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 044095 220 LAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEE--V-ARAVELALQGNCTPRGRRKGTQLLKSL 290 (308)
Q Consensus 220 gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~g--v-~~Ll~Lllqg~cS~raKrKA~~LLklL 290 (308)
+.+|.|.-+|++--++-.|+++..+..||..+.+.+ -.+|= | +.|+++|..- ....||.|..-+..+
T Consensus 883 dllPrltPILknrheKVqen~IdLvg~IadrgpE~v--~aREWMRIcfeLlelLkah--kK~iRRaa~nTfG~I 952 (1172)
T KOG0213|consen 883 DLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV--SAREWMRICFELLELLKAH--KKEIRRAAVNTFGYI 952 (1172)
T ss_pred hhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC--CHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHH
Confidence 467777778888888899999999999999887654 11222 3 4677777654 455566665544433
No 112
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=60.04 E-value=13 Score=37.19 Aligned_cols=78 Identities=24% Similarity=0.422 Sum_probs=43.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCChHHHHHHHH
Q 044095 45 EPPPPPPPPPPPPPPPHQPESSSSSSSTSQSFTQWKFPLPTSPLHPRFRTDPKPEPDLPPKPLPPPIPFTSLQELFHLAE 124 (308)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~f~l~~ 124 (308)
+.+.||||+||-+|-+..++.+|+ .|- -|-+-++++|+.. +.|.-. -+.+-..+-++.-.+.+
T Consensus 40 ~q~~ppp~~p~~~~~~~~~~~~s~------v~s--a~~ve~~~~~n~~-t~~~a~--------~~~~e~~r~~~~~~~~e 102 (377)
T KOG1945|consen 40 LQRQPPPPLPPKPPSQCPPSPMSQ------VFS--AFSVEDYDRKNED-TDPVAS--------CAEYELERRLERMDLFE 102 (377)
T ss_pred cCCCCCCCCCCCccccCCCcchhh------hhh--hhhhhhccccCCC-cccccc--------CCcccccchhhccchhh
Confidence 333344444444444444566663 333 4677888998887 333332 11222334666777778
Q ss_pred hHhccCCCCcccchH
Q 044095 125 LQLSSGSDSDRLAAL 139 (308)
Q Consensus 125 l~lss~~i~~~~~AI 139 (308)
+++.++.+|...+-|
T Consensus 103 ~av~~~~~g~g~~~~ 117 (377)
T KOG1945|consen 103 VAVEKGAEGLGVSII 117 (377)
T ss_pred hhccCCcCCCCcccc
Confidence 888888877544433
No 113
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=58.96 E-value=15 Score=37.70 Aligned_cols=54 Identities=24% Similarity=0.326 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCcCChHHHHHHHHhHhccCCCCcccchHHHHHHHhCCC
Q 044095 86 SPLHPRFRTDPKPEPDLPPKPL-PPPIPFTSLQELFHLAELQLSSGSDSDRLAALYLLERSLLPN 149 (308)
Q Consensus 86 ~p~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~f~l~~l~lss~~i~~~~~AI~lLV~LL~~g 149 (308)
-|-...+.+.+..++.+||||| |||+++ |. +.+-.....+.+.+..|..-|..|
T Consensus 220 ~~~~sa~~~~~s~~g~PPPPPP~PPp~~~------~~----~~~~~~~~~~k~~~~AlFaqlNqG 274 (480)
T KOG2675|consen 220 APDASASPKAASAPGAPPPPPPAPPPAPF------FA----DSNPPSSDANKGGRGALFAQLNQG 274 (480)
T ss_pred ccccccCcCcccCCCCCCCCCCCCCCccc------cc----ccCCCCcccccccHHHHHHHHhcc
Confidence 3333334444455555553333 555454 11 333333334556777777767666
No 114
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.56 E-value=21 Score=38.62 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=48.2
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~ 251 (308)
++..||+++.|.-+++..+|+..|..++.+ -.|.+ .-+..+.+.|++.|...||..--+ +..|+..
T Consensus 411 aldfLvDMfNDE~~~VRL~ai~aL~~Is~~----l~i~e--eql~~il~~L~D~s~dvRe~l~el-L~~~~~~ 476 (823)
T KOG2259|consen 411 ALDFLVDMFNDEIEVVRLKAIFALTMISVH----LAIRE--EQLRQILESLEDRSVDVREALREL-LKNARVS 476 (823)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHH----heecH--HHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCC
Confidence 567888888888888899999999999986 33333 357788888998888887754443 3444443
No 115
>PTZ00429 beta-adaptin; Provisional
Probab=52.99 E-value=40 Score=36.82 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=51.8
Q ss_pred HHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHH
Q 044095 159 ELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKE 238 (308)
Q Consensus 159 a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE 238 (308)
++++.+-+++-+...+.+.|-++.|.++|.|.+..++-.|+++|..+......+-.+.. ..+..|+..|.+.++.++=
T Consensus 160 Aalai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~--~~~~~Ll~~L~e~~EW~Qi 237 (746)
T PTZ00429 160 AAMGLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSN--EWVNRLVYHLPECNEWGQL 237 (746)
T ss_pred HHHHHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHH--HHHHHHHHHhhcCChHHHH
Confidence 44443334444555666789999999999999999999999999998764332222221 2344555555555555554
Q ss_pred HHHHH
Q 044095 239 YAISV 243 (308)
Q Consensus 239 ~AVa~ 243 (308)
..+.+
T Consensus 238 ~IL~l 242 (746)
T PTZ00429 238 YILEL 242 (746)
T ss_pred HHHHH
Confidence 33333
No 116
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.60 E-value=33 Score=39.46 Aligned_cols=82 Identities=15% Similarity=0.071 Sum_probs=65.9
Q ss_pred cHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcC---CCHHHHHHHHHHHHH
Q 044095 170 NRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQ---MAGRGKEYAISVLAV 246 (308)
Q Consensus 170 Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~---gS~~~KE~AVa~L~s 246 (308)
.+.+|-.+|||.+|+..+-+..+.+.-+-+.+|+.|+...+-.++.....|+|..|++++-. ||.----||..|.--
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 48899999999999999987778888889999999998644444444558999999999864 666667788888888
Q ss_pred HhcCC
Q 044095 247 IYGGG 251 (308)
Q Consensus 247 LC~~~ 251 (308)
||-+.
T Consensus 980 Lgayr 984 (2799)
T KOG1788|consen 980 LGAYR 984 (2799)
T ss_pred Hhhcc
Confidence 87654
No 117
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=52.37 E-value=1.4e+02 Score=28.57 Aligned_cols=98 Identities=10% Similarity=0.030 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCcchhhc-cCCccHHHHHHHH
Q 044095 194 AGERALAALELMCT-VAEGAEETRAHALAVPVMVTMMGQ-MAGRGKEYAISVLAVIYGGGDQLVVA-APPEEVARAVELA 270 (308)
Q Consensus 194 ~~E~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~lLr~-gS~~~KE~AVa~L~sLC~~~~~~v~~-a~~~gv~~Ll~Ll 270 (308)
..-.||.+|.-++- |+.-|....+ ..++..|+++|.. .+..-+-.++.+|..+...+....+. -...|...+..++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 34457788888876 5677777776 6789999999964 46677777888998888776543332 3345555555556
Q ss_pred HhCCCCHHHHHHHHHHHHHHHh
Q 044095 271 LQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 271 lqg~cS~raKrKA~~LLklL~~ 292 (308)
....-+...|=|..+.|-..--
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 5544466677777777766543
No 118
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=51.89 E-value=60 Score=31.40 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=38.5
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHHhcC---hhhHHHHHhccCcHHHHHHHhcCCCH--HHHHHHHHHHHHH
Q 044095 180 VGAVIEVVAELDAAAGERALAALELMCTV---AEGAEETRAHALAVPVMVTMMGQMAG--RGKEYAISVLAVI 247 (308)
Q Consensus 180 Vp~LVeLL~~~s~~~~E~ALAiL~~La~~---~eGr~aI~~~~gaIp~LV~lLr~gS~--~~KE~AVa~L~sL 247 (308)
+..+...|+.++.+-...|+.++..|+.. .+...+|.+ ...+.|.+++++++. ..|..|+.+|..+
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 34455555555544455677777777765 244556666 357888888887643 4444444444443
No 119
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=51.05 E-value=1.5e+02 Score=24.96 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchh-hccCCcc-HHHHHHHHHhC
Q 044095 196 ERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLV-VAAPPEE-VARAVELALQG 273 (308)
Q Consensus 196 E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v-~~a~~~g-v~~Ll~Lllqg 273 (308)
+..+.+-+.+-..+++.. .++..|.+.|..+++..+-+|+.+|=.+-.+++... .++.... +-.++.++...
T Consensus 24 ~~~l~icD~i~~~~~~~k------ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~ 97 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAK------EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK 97 (140)
T ss_dssp HHHHHHHHHHHTSTTHHH------HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCccHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC
Confidence 344454555544433321 256778999999999999999999998888887554 3344444 34555555544
Q ss_pred CCCHH--HHHHHHHHHHHHHhcCCCC
Q 044095 274 NCTPR--GRRKGTQLLKSLKEYGQPD 297 (308)
Q Consensus 274 ~cS~r--aKrKA~~LLklL~~~~e~~ 297 (308)
..... .|+|+.++|......-+++
T Consensus 98 ~~~~~~~Vk~k~l~ll~~W~~~f~~~ 123 (140)
T PF00790_consen 98 KTDPETPVKEKILELLQEWAEAFKSD 123 (140)
T ss_dssp TTHHHSHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCchhHHHHHHHHHHHHHHHHHCCC
Confidence 32333 7999998888777655443
No 120
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=49.84 E-value=83 Score=27.14 Aligned_cols=71 Identities=14% Similarity=0.089 Sum_probs=54.8
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHHhcC-h-hhHHHHHhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 044095 178 GAVGAVIEVVAELDAAAGERALAALELMCTV-A-EGAEETRAHALAVPVMVTMMGQ-MAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 178 GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~-eGr~aI~~~~gaIp~LV~lLr~-gS~~~KE~AVa~L~sLC~ 249 (308)
.||.+|..-|...+...+-.||.+|+.+..+ . .-..+|+. ...+..|++++.. ....-|+..+.++.....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVAS-RDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4556666777777777788899999999984 2 34567766 5688999999988 788888999988877754
No 121
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=49.05 E-value=2.1e+02 Score=28.57 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=63.9
Q ss_pred hCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhh
Q 044095 177 AGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVV 256 (308)
Q Consensus 177 aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~ 256 (308)
...+..+..+|.+.+....-+|+.++..+....+ +.. .++..|+++|......-|-.++..|..|+......+
T Consensus 230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v- 302 (526)
T PF01602_consen 230 NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV- 302 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH-
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH----HHH--hhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh-
Confidence 5567777777776666666677777777776555 222 468889999987777788888888888877652222
Q ss_pred ccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 044095 257 AAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 257 ~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~ 292 (308)
...... +..+. -+.+.-.|++|.++|..+..
T Consensus 303 ---~~~~~~-~~~l~-~~~d~~Ir~~~l~lL~~l~~ 333 (526)
T PF01602_consen 303 ---FNQSLI-LFFLL-YDDDPSIRKKALDLLYKLAN 333 (526)
T ss_dssp ---GTHHHH-HHHHH-CSSSHHHHHHHHHHHHHH--
T ss_pred ---hhhhhh-hheec-CCCChhHHHHHHHHHhhccc
Confidence 111111 12222 22266667777766665543
No 122
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=48.60 E-value=82 Score=27.02 Aligned_cols=71 Identities=10% Similarity=-0.008 Sum_probs=54.6
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHHhcC--hhhHHHHHhccCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhc
Q 044095 178 GAVGAVIEVVAELDAAAGERALAALELMCTV--AEGAEETRAHALAVPVMVTMMGQ-MAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 178 GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~--~eGr~aI~~~~gaIp~LV~lLr~-gS~~~KE~AVa~L~sLC~ 249 (308)
.|+..|..-|..++...+=.||.+|+.+..+ ..-..+|+. ...+..|++++.. ...+-|+.++.++..-..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4566677777777788888899999999985 234566665 5689999999975 577888999998887764
No 123
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=48.04 E-value=1.8e+02 Score=30.48 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=8.6
Q ss_pred hCcHHHHHHHHhccC
Q 044095 177 AGAVGAVIEVVAELD 191 (308)
Q Consensus 177 aGAVp~LVeLL~~~s 191 (308)
.||+.-|..++.+++
T Consensus 305 k~alsel~~m~~e~s 319 (516)
T KOG2956|consen 305 KEALSELPKMLCEGS 319 (516)
T ss_pred HHHHHHHHHHHHccc
Confidence 355566666665553
No 124
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=47.52 E-value=1e+02 Score=25.75 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=54.3
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchh-hccCC-ccHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhcCCC
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLV-VAAPP-EEVARAVELALQG-NCTPRGRRKGTQLLKSLKEYGQP 296 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v-~~a~~-~gv~~Ll~Lllqg-~cS~raKrKA~~LLklL~~~~e~ 296 (308)
++..|-+.|..+++...-.|+.+|=.+..+++... .++.. +-.-.++.++... ......|+|+.++++.....-.+
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 56778888888999999999999988888887643 33333 3344555555542 34778999999999887765443
No 125
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=47.43 E-value=2.2e+02 Score=29.39 Aligned_cols=129 Identities=11% Similarity=0.036 Sum_probs=87.0
Q ss_pred CcHHHHHHHHhc-cChhHHHHHHHHHHHHhcChhhHHHHHh-cc-----CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 044095 178 GAVGAVIEVVAE-LDAAAGERALAALELMCTVAEGAEETRA-HA-----LAVPVMVTMMGQMAGRGKEYAISVLAVIYGG 250 (308)
Q Consensus 178 GAVp~LVeLL~~-~s~~~~E~ALAiL~~La~~~eGr~aI~~-~~-----gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~ 250 (308)
-+|-.++.|++. ..++++...|..+.-+-..+--|..+.. .+ -.-...+.+|.+...--.+....||..+...
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 567788888874 3577788888888766654444444332 11 2356778888888776667688888888776
Q ss_pred CcchhhccCCccH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCCCccccccCCC
Q 044095 251 GDQLVVAAPPEEV-ARAVELALQGNCTPRGRRKGTQLLKSLKEYGQPDTTQDEMNGCD 307 (308)
Q Consensus 251 ~~~~v~~a~~~gv-~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e~~~~~~~~~g~~ 307 (308)
+..++ ...+.-+ ...+..+++.+-+.+...-|...|..+-+..+++..+...+||+
T Consensus 145 g~~~~-~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~ 201 (442)
T KOG2759|consen 145 GNCKM-ELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVS 201 (442)
T ss_pred ccccc-cchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcch
Confidence 54333 1101112 23334445443478888889999999999999999999999986
No 126
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=46.46 E-value=60 Score=32.43 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=53.1
Q ss_pred CCCCcHHHHHHhCcHHHHHHHHh-cc---ChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcC
Q 044095 166 LAESNRRVAVEAGAVGAVIEVVA-EL---DAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQ 231 (308)
Q Consensus 166 ~~~~Nr~~iV~aGAVp~LVeLL~-~~---s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~ 231 (308)
..+-.-..+.++|.++.+++.+. .+ +.++.-.--.+|..||-+.+|.+.+.+ .+.+..+++++.+
T Consensus 139 nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~-~~~l~~~f~if~s 207 (379)
T PF06025_consen 139 NEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKS-SNPLDKLFEIFTS 207 (379)
T ss_pred cCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHh-cChHHHHHHHhCC
Confidence 33556788999999999999997 43 455555566788889999999999988 5899999999886
No 127
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=45.78 E-value=1.1e+02 Score=26.28 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=54.7
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchh-hccCCccH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCC
Q 044095 220 LAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLV-VAAPPEEV-ARAVELALQGNCTPRGRRKGTQLLKSLKEYGQPD 297 (308)
Q Consensus 220 gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v-~~a~~~gv-~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e~~ 297 (308)
.++..|.+.|..++....-+|+.+|=.+-.+++... .++...+. -.++.++. .....+.|+|+.+|++.....-+++
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~-~~~~~~Vk~kil~li~~W~~~f~~~ 119 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIK-TTKNEEVRQKILELIQAWALAFRNK 119 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHc-ccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 367888899999999999999988888888876644 33444453 35544443 3447889999999998877655443
No 128
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=45.64 E-value=1.3e+02 Score=25.08 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=51.7
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcC-hh-hHHHHHhccCcHHHHHHHhcC---CCHHHHHHHHHHHHHHhc
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTV-AE-GAEETRAHALAVPVMVTMMGQ---MAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~e-Gr~aI~~~~gaIp~LV~lLr~---gS~~~KE~AVa~L~sLC~ 249 (308)
|+..|-.-|..++...+-.||.+|+.+..+ .. -...|+. ...+-.|++++.. ....-|+.++.+|.....
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 445666666666777788899999999984 22 4566766 3467779999975 477888889988887765
No 129
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.52 E-value=1.8e+02 Score=33.54 Aligned_cols=169 Identities=12% Similarity=0.019 Sum_probs=91.1
Q ss_pred cCChHHHHHHHHhHhccCCC---CcccchHHHHHHHhCCCCCCCCCcHHHHH---HHhcCC--CCcHHHHHHhCcHHHHH
Q 044095 113 FTSLQELFHLAELQLSSGSD---SDRLAALYLLERSLLPNPPSDQACQPELM---RALCLA--ESNRRVAVEAGAVGAVI 184 (308)
Q Consensus 113 ~~~~~~~f~l~~l~lss~~i---~~~~~AI~lLV~LL~~g~~~~k~~a~a~l---~aL~~~--~~Nr~~iV~aGAVp~LV 184 (308)
-...+.|+...-.|+..... +...+++.-|..-..+.....+ ...++ -.++.+ +++-..+- .++
T Consensus 588 ~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~--~~slLdl~~~~a~~~~e~~vs~l~------~v~ 659 (1176)
T KOG1248|consen 588 ASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFK--TLSLLDLLIALAPVQTESQVSKLF------TVD 659 (1176)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHH--HHHHHHHHHhhhccccchhHHHHH------Hhh
Confidence 33478888888777766542 1222344433333332111111 11222 233333 22333322 222
Q ss_pred HHH-hccChhHHHHHHHHHHHHhcChhhHHHHHhcc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCcc
Q 044095 185 EVV-AELDAAAGERALAALELMCTVAEGAEETRAHA-LAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEE 262 (308)
Q Consensus 185 eLL-~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~-gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~g 262 (308)
... ...+..+..++-.+|+.|+...+|......+- .....|.+-++..+.-++..+..+|..|.........+.+...
T Consensus 660 ~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~ 739 (1176)
T KOG1248|consen 660 PEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKL 739 (1176)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 222 23467888999999999999987777665421 2233444555555555555555555555443332232344455
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 044095 263 VARAVELALQGNCTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 263 v~~Ll~Lllqg~cS~raKrKA~~LLklL~ 291 (308)
|+..++.+ -+++..+|+.|.++|..+.
T Consensus 740 I~EvIL~~--Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 740 IPEVILSL--KEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHhc--ccccHHHHhhHHHHHHHHH
Confidence 55543222 5669999999999999887
No 130
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=44.35 E-value=1.1e+02 Score=26.43 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=51.0
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcC--hhhHHHHHhccCcHHHHHHHhcC------CCHHHHHHHHHHHHHHhc
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTV--AEGAEETRAHALAVPVMVTMMGQ------MAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~--~eGr~aI~~~~gaIp~LV~lLr~------gS~~~KE~AVa~L~sLC~ 249 (308)
|+..|..-|...+...+=.||.+|+.+..+ ..-..+|+. ...+..|++++.. ....-|+..+.++..-..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 556667777777777777899999999873 344677766 5688889999963 457888888888766643
No 131
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=43.81 E-value=60 Score=38.08 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=53.8
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~ 251 (308)
+|..||..+.++....++.||.+|..|+. .....+..++.-|-.+++.|..-+..+-.....+|..|+..+
T Consensus 474 Vv~~Lvthi~sg~~~ev~~aL~vL~~L~~--~~~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 474 VVGALVTHIGSGNSQEVDAALDVLCELAE--KNPSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHH--H-HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 56788888888888888999999999996 356677776667777888888888888888999999998643
No 132
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=43.38 E-value=57 Score=35.39 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=79.0
Q ss_pred HHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHH---HHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHH
Q 044095 139 LYLLERSLLPNPPSDQACQPELMRALCLAESNRR---VAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEET 215 (308)
Q Consensus 139 I~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~---~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI 215 (308)
++....+|+..++..+..++++++.|...-.|+. .+...|. +|.|-|.+...++.--.+.++..+-+...-+..-
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 3444455555444334334556665543222221 1222232 2444444333444333333333333322211110
Q ss_pred HhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCcc--H-HHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 044095 216 RAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEE--V-ARAVELALQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 216 ~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~g--v-~~Ll~Lllqg~cS~raKrKA~~LLklL~~ 292 (308)
--..|.+|.|.-+||+--.+-.++.+..+..||.++.+.+ -++|= | ..|++++..- +...||.|.+-+..+.+
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi--~~rEWMRIcfeLvd~Lks~--nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI--GVREWMRICFELVDSLKSW--NKEIRRNATETFGCISR 759 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC--CHHHHHHHHHHHHHHHHHh--hHHHHHhhhhhhhhHHh
Confidence 0124678899999998888888999999999999887643 22222 2 3666766655 67777888765554443
No 133
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=42.99 E-value=44 Score=36.58 Aligned_cols=69 Identities=17% Similarity=0.154 Sum_probs=54.2
Q ss_pred chHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhc
Q 044095 137 AALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCT 207 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~ 207 (308)
.++.++.+++..++..-+ ..++++-.-.+.-++....++|.+..+.+++.|.++.++-.|+..|..+-.
T Consensus 127 ~~~~~ik~~l~d~~ayVR--k~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 127 NIIDPIKKLLTDPHAYVR--KTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred HHHHHHHHHccCCcHHHH--HHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 477888888887774333 234444444667889999999999999999999999999999998887764
No 134
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=42.60 E-value=1.3e+02 Score=25.86 Aligned_cols=75 Identities=8% Similarity=0.073 Sum_probs=54.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhh-ccCCccH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCC
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVV-AAPPEEV-ARAVELALQGNCTPRGRRKGTQLLKSLKEYGQP 296 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~-~a~~~gv-~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e~ 296 (308)
++..|.+.|........-+|+.+|=.+..+++.... ++..... -.|+.++.. ......|+|+.+|++.....-.+
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~-~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIND-RVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHhCC
Confidence 577888889888899999999999988888876543 4445553 355544443 24788899999888877655443
No 135
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.45 E-value=2.1e+02 Score=32.99 Aligned_cols=71 Identities=15% Similarity=0.126 Sum_probs=48.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCcc-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEE-VARAVELALQGNCTPRGRRKGTQLLKSLKEY 293 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~g-v~~Ll~Lllqg~cS~raKrKA~~LLklL~~~ 293 (308)
.|..+...|...++.-.+-||+.+-.++....+.......+. ++.++.++-+. +-.-|.|.+.||+.|-+-
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~--k~~~r~Kvr~LlekLirk 899 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH--KIKVRKKVRLLLEKLIRK 899 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHH
Confidence 455566666778999999999999998876654332333333 34554444444 778888888999877543
No 136
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.80 E-value=2.3e+02 Score=30.45 Aligned_cols=125 Identities=12% Similarity=0.087 Sum_probs=73.9
Q ss_pred HHHhcCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHH
Q 044095 161 MRALCLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYA 240 (308)
Q Consensus 161 l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~A 240 (308)
+..|+..+.-+..+-=.-.|.+|...|.+...++.=.+|.-+..|=....|..-.-. ......|.+-|.+.|+.--+.+
T Consensus 319 l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLsd~sd~vvl~~ 397 (675)
T KOG0212|consen 319 LLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLSDRSDEVVLLA 397 (675)
T ss_pred HHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhcCchhHHHHHH
Confidence 334554444443322223456666667665566655566666666555555555444 5688999999999999999999
Q ss_pred HHHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 044095 241 ISVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 241 Va~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~ 291 (308)
+.+|.++|.+.... -...-.-.|+++..+. +.-.++++.-+++-|+
T Consensus 398 L~lla~i~~s~~~~---~~~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 398 LSLLASICSSSNSP---NLRKFLLSLLEMFKED--TKLLEVRGNLIIRQLC 443 (675)
T ss_pred HHHHHHHhcCcccc---cHHHHHHHHHHHHhhh--hHHHHhhhhHHHHHHH
Confidence 99999999865431 0011122344433333 4444555555555544
No 137
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=40.17 E-value=2.5e+02 Score=27.09 Aligned_cols=93 Identities=11% Similarity=0.031 Sum_probs=67.1
Q ss_pred HHHHHhcCCCCcHHHHHHhCcHHHHHHHHhccC-----hhHHHHHHHHHHHHhcChh--hHHHHHhccCcHHHHHHHhcC
Q 044095 159 ELMRALCLAESNRRVAVEAGAVGAVIEVVAELD-----AAAGERALAALELMCTVAE--GAEETRAHALAVPVMVTMMGQ 231 (308)
Q Consensus 159 a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~s-----~~~~E~ALAiL~~La~~~e--Gr~aI~~~~gaIp~LV~lLr~ 231 (308)
+++-.++.+++-|...+++...--|.-+|...+ +.+.=.+|.|...|...++ --.-+.. .+.||.-++.|+.
T Consensus 72 aLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~ 150 (262)
T PF04078_consen 72 ALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEF 150 (262)
T ss_dssp HHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHh
Confidence 444467899999999999999988888886322 2233357888888888543 2333334 5699999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCCc
Q 044095 232 MAGRGKEYAISVLAVIYGGGD 252 (308)
Q Consensus 232 gS~~~KE~AVa~L~sLC~~~~ 252 (308)
||+-.|--|..|+..|=.++.
T Consensus 151 GselSKtvAtfIlqKIL~dd~ 171 (262)
T PF04078_consen 151 GSELSKTVATFILQKILLDDV 171 (262)
T ss_dssp S-HHHHHHHHHHHHHHHHSHH
T ss_pred ccHHHHHHHHHHHHHHHcchh
Confidence 999999999999998866553
No 138
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=39.77 E-value=1.2e+02 Score=31.77 Aligned_cols=6 Identities=17% Similarity=-0.202 Sum_probs=2.5
Q ss_pred ccccCC
Q 044095 78 QWKFPL 83 (308)
Q Consensus 78 ~~~~~~ 83 (308)
+|.|.-
T Consensus 499 g~p~~~ 504 (554)
T KOG0119|consen 499 GAPFHG 504 (554)
T ss_pred CCCCCC
Confidence 444433
No 139
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.38 E-value=1.5e+02 Score=24.27 Aligned_cols=66 Identities=15% Similarity=0.016 Sum_probs=44.6
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Q 044095 178 GAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVL 244 (308)
Q Consensus 178 GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L 244 (308)
+-+..|++-+.....-..++++++|..|..++.|...+.. -|++..|-++-.......+...-.+|
T Consensus 30 ~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~-iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 30 LLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRD-IGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHH-ccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344555555544455789999999999999999998877 57888865555445555444443333
No 140
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.37 E-value=1.5e+02 Score=24.88 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=50.2
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcC--hhhHHHHHhccCcHHHHHHHhcCC-C-HHHHHHHHHHHHHHhc
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTV--AEGAEETRAHALAVPVMVTMMGQM-A-GRGKEYAISVLAVIYG 249 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~--~eGr~aI~~~~gaIp~LV~lLr~g-S-~~~KE~AVa~L~sLC~ 249 (308)
||..|-.-|..++...+-.||.+|+.+..+ ..=..+|+. ...+..|++++..- . +.-|+.++.++..-..
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 344566666666777788899999999985 334566665 56889999998873 3 3378888888877754
No 141
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=39.18 E-value=1.7e+02 Score=32.46 Aligned_cols=67 Identities=25% Similarity=0.263 Sum_probs=41.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSL 290 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL 290 (308)
.|..|++.+.+.++-+|-.|+.++-.||.....-+ -.+..+..++---+|. -+...||+|..|+--|
T Consensus 347 Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~--~~r~ev~~lv~r~lqD-rss~VRrnaikl~SkL 413 (1128)
T COG5098 347 LVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV--GRRHEVIRLVGRRLQD-RSSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc--chHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHH
Confidence 45555666666899999999999999987543111 1122233333222333 3889999999877533
No 142
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=37.96 E-value=2.7e+02 Score=24.19 Aligned_cols=88 Identities=16% Similarity=0.138 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCcc-H-HHHHHHHH
Q 044095 194 AGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEE-V-ARAVELAL 271 (308)
Q Consensus 194 ~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~g-v-~~Ll~Lll 271 (308)
..-.++.+|.-|+..-. -+.+ .-++.|...|++.+..-|+.|+.+|..|-..+--++ .| + ...+.++
T Consensus 4 vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~-----k~~l~~~~l~~l- 72 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV-----KGQLFSRILKLL- 72 (178)
T ss_pred HHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee-----hhhhhHHHHHHH-
Confidence 34557777777776432 2222 357889999999999999999999999987653332 23 3 3433333
Q ss_pred hCCCCHHHHHHHHHHHHHHHhc
Q 044095 272 QGNCTPRGRRKGTQLLKSLKEY 293 (308)
Q Consensus 272 qg~cS~raKrKA~~LLklL~~~ 293 (308)
.|-++..|..|..++.-+...
T Consensus 73 -~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 -VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred -cCCCHHHHHHHHHHHHHHHHh
Confidence 444889999998777766655
No 143
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=37.82 E-value=30 Score=28.51 Aligned_cols=8 Identities=38% Similarity=0.916 Sum_probs=5.1
Q ss_pred cccccccc
Q 044095 15 LFSCGFFC 22 (308)
Q Consensus 15 ~~~~~~~~ 22 (308)
+|+|+||+
T Consensus 33 v~~~t~~~ 40 (97)
T PF04834_consen 33 VFCSTFFS 40 (97)
T ss_pred HHHHHHHH
Confidence 46677665
No 144
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=37.82 E-value=1.9e+02 Score=24.99 Aligned_cols=87 Identities=13% Similarity=-0.027 Sum_probs=50.9
Q ss_pred HHHHHHHHHhc-ChhhHHHHHhccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCC
Q 044095 197 RALAALELMCT-VAEGAEETRAHALAVPVMVTMMG-QMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGN 274 (308)
Q Consensus 197 ~ALAiL~~La~-~~eGr~aI~~~~gaIp~LV~lLr-~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~ 274 (308)
.++.+|..|=- ..+--..|...+|.+..|+.++. ...++..+.++.=|++.++.+.+++..+...|+.-|-.++.+++
T Consensus 62 ~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~ 141 (157)
T PF11701_consen 62 IAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSK 141 (157)
T ss_dssp HHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc
Confidence 44444444433 34555556666899999999998 35555556666666666666666665566677766655444442
Q ss_pred CCHH-HHHHHH
Q 044095 275 CTPR-GRRKGT 284 (308)
Q Consensus 275 cS~r-aKrKA~ 284 (308)
++. -|-.|.
T Consensus 142 -~~~~ir~~A~ 151 (157)
T PF11701_consen 142 -DDSEIRVLAA 151 (157)
T ss_dssp --HH-CHHHHH
T ss_pred -chHHHHHHHH
Confidence 333 344443
No 145
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=37.66 E-value=26 Score=36.19 Aligned_cols=7 Identities=0% Similarity=0.302 Sum_probs=3.6
Q ss_pred HHHHHHH
Q 044095 118 ELFHLAE 124 (308)
Q Consensus 118 ~~f~l~~ 124 (308)
+.|-++.
T Consensus 136 ~~WnvG~ 142 (465)
T PF01690_consen 136 DGWNVGN 142 (465)
T ss_pred ccccccc
Confidence 5555554
No 146
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=37.37 E-value=83 Score=34.78 Aligned_cols=57 Identities=12% Similarity=0.181 Sum_probs=48.0
Q ss_pred HHHhCcHHHHHHHHhc-----cChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcC
Q 044095 174 AVEAGAVGAVIEVVAE-----LDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQ 231 (308)
Q Consensus 174 iV~aGAVp~LVeLL~~-----~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~ 231 (308)
+.+.|.+.+|+++|.. +...+....+.+|...+...+||.++.+ -++|+.|++.|+.
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~-~~al~~LL~~L~~ 174 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLE-LNALNRLLSVLNR 174 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHH-cCCHHHHHHHHHH
Confidence 3446899999999963 3467788889999999999999999999 7899999999974
No 147
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.69 E-value=1.3e+02 Score=34.65 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=60.3
Q ss_pred HHHHHHhccChhHHHHHHHHHHHHhc----ChhhHHHHHhccC-cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCc---c
Q 044095 182 AVIEVVAELDAAAGERALAALELMCT----VAEGAEETRAHAL-AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGD---Q 253 (308)
Q Consensus 182 ~LVeLL~~~s~~~~E~ALAiL~~La~----~~eGr~aI~~~~g-aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~---~ 253 (308)
.||++|...+-.+.-..+.+++++.. .+++.++....-+ .+..|++-+.+.+.-.|-.++.+...||.... .
T Consensus 316 ~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~ 395 (1251)
T KOG0414|consen 316 LLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLG 395 (1251)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCcc
Confidence 34444433333334445555555543 3444444443222 56667777777899999999999999998642 1
Q ss_pred hhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 044095 254 LVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 254 ~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~ 292 (308)
.+.+++.+.+..+ -|.|.-.|++|..|+..|..
T Consensus 396 ~~~eV~~la~grl------~DkSslVRk~Ai~Ll~~~L~ 428 (1251)
T KOG0414|consen 396 SRTEVLELAIGRL------EDKSSLVRKNAIQLLSSLLD 428 (1251)
T ss_pred HHHHHHHHHhccc------ccccHHHHHHHHHHHHHHHh
Confidence 1222211112221 14488899999988876654
No 148
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=36.60 E-value=1.1e+02 Score=24.57 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=47.2
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhc-cCCccH-HHHHHH---HHhCC-CCHHHHHHHHHHHHHHH
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVA-APPEEV-ARAVEL---ALQGN-CTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~-a~~~gv-~~Ll~L---llqg~-cS~raKrKA~~LLklL~ 291 (308)
++..|.+.|.....+.+-.|+.+|-.|..++++.... +..... ..++.+ -..|. -....|+|+.+|++...
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 5667777787788999999999999999998876543 222221 122111 12332 25778999999988754
No 149
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=36.57 E-value=1.3e+02 Score=25.51 Aligned_cols=73 Identities=14% Similarity=0.204 Sum_probs=46.8
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHH-hC-------C-CCHHHHHHHHHHHHHHH
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELAL-QG-------N-CTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lll-qg-------~-cS~raKrKA~~LLklL~ 291 (308)
.+..|.+.|.+.+.--|-.|+.+|-.||..+.+..+..+......+-.+.- .| + -....|.+|.+++++|-
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 345677777777888888899999999998865433333333221111111 22 2 24567899999999986
Q ss_pred hc
Q 044095 292 EY 293 (308)
Q Consensus 292 ~~ 293 (308)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 54
No 150
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=36.20 E-value=2.4e+02 Score=30.41 Aligned_cols=176 Identities=12% Similarity=0.040 Sum_probs=93.0
Q ss_pred CcCChHHHHHHHHhHhccCCCC-----------------cccchHHHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHH
Q 044095 112 PFTSLQELFHLAELQLSSGSDS-----------------DRLAALYLLERSLLPNPPSDQACQPELMRALCLAESNRRVA 174 (308)
Q Consensus 112 ~~~~~~~~f~l~~l~lss~~i~-----------------~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~i 174 (308)
-++++-|+|++.-.+-.-..|. ...-.-..+.+++.+|+...|..+--.+..|+.+..=-...
T Consensus 41 ~s~~~~e~~~~~~~~~~~~yite~nrn~i~ng~iL~l~~sp~~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~ef 120 (713)
T KOG2999|consen 41 WSMNLHEDYALQLMADKNRYITEKNRNEIKNGFILQLCASPSHYAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEF 120 (713)
T ss_pred ccCCchHHHHHHhcCCccceeehhhhhcccCCcEEEeecCchHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHH
Confidence 5677888888764332211111 11123456777777877655533223444566666556677
Q ss_pred HHhCcHHHHHHHHhccCh----hHHHHHHHHHHHHhcChhhHHHHHh-ccCcHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 044095 175 VEAGAVGAVIEVVAELDA----AAGERALAALELMCTVAEGAEETRA-HALAVPVMVTMMG--QMAGRGKEYAISVLAVI 247 (308)
Q Consensus 175 V~aGAVp~LVeLL~~~s~----~~~E~ALAiL~~La~~~eGr~aI~~-~~gaIp~LV~lLr--~gS~~~KE~AVa~L~sL 247 (308)
++...+..|..++.|+.. ++....|+++.-|-.+ |...-.. ...+|..++.++. ..-...-+.|+++|-++
T Consensus 121 i~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh--gvvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~ 198 (713)
T KOG2999|consen 121 IRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH--GVVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESL 198 (713)
T ss_pred HhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh--ceeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHH
Confidence 778888899999987644 3333444444433322 2111000 0113333444432 12223346688888888
Q ss_pred hcCCcchhhccCCcc-HHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 044095 248 YGGGDQLVVAAPPEE-VARAVELALQGNCTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 248 C~~~~~~v~~a~~~g-v~~Ll~Lllqg~cS~raKrKA~~LLklL~ 291 (308)
-.++......+.++- +..++..+.-+ +.+-..+|-+||..|-
T Consensus 199 vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 199 VLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCAIALLNALF 241 (713)
T ss_pred HhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHHHHHHHHHH
Confidence 776654332222332 44554433334 6777777888887653
No 151
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=36.01 E-value=3.1e+02 Score=30.27 Aligned_cols=152 Identities=13% Similarity=0.118 Sum_probs=93.7
Q ss_pred hccCCCCcccchHHHHHHHhCCCCCCCCCcHHHHHHHhc---------------CCCCcHHHHHHhCcHHHHHHHHhccC
Q 044095 127 LSSGSDSDRLAALYLLERSLLPNPPSDQACQPELMRALC---------------LAESNRRVAVEAGAVGAVIEVVAELD 191 (308)
Q Consensus 127 lss~~i~~~~~AI~lLV~LL~~g~~~~k~~a~a~l~aL~---------------~~~~Nr~~iV~aGAVp~LVeLL~~~s 191 (308)
+++..+-++.+|+.-++.-+..|.+-.- .-.+++.++. .+.+++. -...=||..+..=|.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmss-Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P-~~~lLavNti~kDl~d~N 105 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSS-LFPDVIKNVATRDVELKRLLYLYLERYAKLKP-ELALLAVNTIQKDLQDPN 105 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhccCCC
Confidence 5565666778999999888888765111 0134444433 2222222 001123445555555667
Q ss_pred hhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHH-HHHHH
Q 044095 192 AAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVAR-AVELA 270 (308)
Q Consensus 192 ~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~-Ll~Ll 270 (308)
+...-.|+..|..|-. .+|.. ..+..+.+.+.+....-|..|+-++..|.+.+.+. ..+.|..- +..++
T Consensus 106 ~~iR~~AlR~ls~l~~-----~el~~--~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~ 175 (757)
T COG5096 106 EEIRGFALRTLSLLRV-----KELLG--NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---YHELGLIDILKELV 175 (757)
T ss_pred HHHHHHHHHHHHhcCh-----HHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHh
Confidence 7777777777766643 33333 36899999999999999999999999998876543 33555433 33333
Q ss_pred HhCCCCHHHHHHHHHHHHHHHh
Q 044095 271 LQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 271 lqg~cS~raKrKA~~LLklL~~ 292 (308)
... ++..++.|..-|..+..
T Consensus 176 ~D~--dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 176 ADS--DPIVIANALASLAEIDP 195 (757)
T ss_pred hCC--CchHHHHHHHHHHHhch
Confidence 344 77777777766665543
No 152
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=35.57 E-value=1.9e+02 Score=24.74 Aligned_cols=80 Identities=10% Similarity=0.069 Sum_probs=58.2
Q ss_pred cHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHH-hccCcHHHHHH-HhcC--CCHHHHHHHHHHHH
Q 044095 170 NRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETR-AHALAVPVMVT-MMGQ--MAGRGKEYAISVLA 245 (308)
Q Consensus 170 Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~-~~~gaIp~LV~-lLr~--gS~~~KE~AVa~L~ 245 (308)
.-..+++....+.|+..+...+....+.++.++..|... -|..+. +.+-.+..++. +|.. ++-..|+.++.+|.
T Consensus 65 ~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~--~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~ 142 (168)
T PF12783_consen 65 SLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSR--FRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILR 142 (168)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH
Confidence 456778888889999988766688889999999999853 233332 22335566666 5553 24689999999999
Q ss_pred HHhcCC
Q 044095 246 VIYGGG 251 (308)
Q Consensus 246 sLC~~~ 251 (308)
.+|...
T Consensus 143 ~l~~~p 148 (168)
T PF12783_consen 143 ELCKDP 148 (168)
T ss_pred HHHhCh
Confidence 999754
No 153
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=35.40 E-value=97 Score=25.57 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=33.0
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHh
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRA 217 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~ 217 (308)
+|+.||.-|-|.+.+++..|+.+|...+.+.+..+.+..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 467888888888899999999999999998877776665
No 154
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=34.91 E-value=4e+02 Score=27.17 Aligned_cols=101 Identities=10% Similarity=0.161 Sum_probs=63.7
Q ss_pred HHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcH-HHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044095 173 VAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAV-PVMVTMMGQMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 173 ~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaI-p~LV~lLr~gS~~~KE~AVa~L~sLC~~~ 251 (308)
.+|.+|..+.++..+...+.+.+..|...+..++..++|-++|...+..= --++.+-.+-++-.|-.-...+..|.+-+
T Consensus 123 lvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiS 202 (524)
T KOG4413|consen 123 LVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSIS 202 (524)
T ss_pred HHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 46789999999999988888999999999999999999999998744211 12233333444444444445555555444
Q ss_pred cchhhccCCccHHHHHHHHHhC
Q 044095 252 DQLVVAAPPEEVARAVELALQG 273 (308)
Q Consensus 252 ~~~v~~a~~~gv~~Ll~Lllqg 273 (308)
++..-+....|...+++.-+.|
T Consensus 203 pesaneckkSGLldlLeaElkG 224 (524)
T KOG4413|consen 203 PESANECKKSGLLDLLEAELKG 224 (524)
T ss_pred HHHHhHhhhhhHHHHHHHHhcC
Confidence 4333233344444444333444
No 155
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=34.64 E-value=57 Score=31.29 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=70.2
Q ss_pred CCCCCcHH-HHHHHhcCCCCcHHHHHHhCcHHHHHHHHhcc-----ChhHHHHHHHHHHHHhcChh--hHHHHHhccCcH
Q 044095 151 PSDQACQP-ELMRALCLAESNRRVAVEAGAVGAVIEVVAEL-----DAAAGERALAALELMCTVAE--GAEETRAHALAV 222 (308)
Q Consensus 151 ~~~k~~a~-a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~~~-----s~~~~E~ALAiL~~La~~~e--Gr~aI~~~~gaI 222 (308)
.+.+++.+ .++.-|+.+++.|.-.+.|-.-=.|-.+|... -+.+.=.+|.+++.|..+++ --.-+.. ...|
T Consensus 113 ~snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLlt-Teiv 191 (315)
T COG5209 113 ESNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLT-TEIV 191 (315)
T ss_pred hhhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHh-hhHH
Confidence 33444432 44556778888888888887766666666422 13344468889998887542 2223334 4689
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhcCCc
Q 044095 223 PVMVTMMGQMAGRGKEYAISVLAVIYGGGD 252 (308)
Q Consensus 223 p~LV~lLr~gS~~~KE~AVa~L~sLC~~~~ 252 (308)
|..+++|..||+-.|--|+-|+--+-.+|.
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDv 221 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccch
Confidence 999999999999999999999988766554
No 156
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=34.54 E-value=1e+02 Score=26.04 Aligned_cols=71 Identities=14% Similarity=0.058 Sum_probs=51.9
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHHhcC--hhhHHHHHhccCcHHHHHHHhcCC-CHH---HHHHHHHHHHHHhc
Q 044095 178 GAVGAVIEVVAELDAAAGERALAALELMCTV--AEGAEETRAHALAVPVMVTMMGQM-AGR---GKEYAISVLAVIYG 249 (308)
Q Consensus 178 GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~--~eGr~aI~~~~gaIp~LV~lLr~g-S~~---~KE~AVa~L~sLC~ 249 (308)
-|+..|..-|..++...+-.||.+|+.|..+ ..=+.+|+. ...+..|++++... ... -|+.++.+|.....
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~-~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVAS-KEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhH-HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3456677777777888889999999999984 344667766 45888999988763 444 57888877766543
No 157
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=34.33 E-value=3.5e+02 Score=26.86 Aligned_cols=109 Identities=11% Similarity=0.104 Sum_probs=66.3
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcC-hhh-------------HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHH
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTV-AEG-------------AEETRAHALAVPVMVTMMGQMAGRGKEYAISVL 244 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~eG-------------r~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L 244 (308)
.+..|+++|.+ .+....|...++.|... ++- |..+.. ..+|.|++..+..++..|++.+.+|
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhcChhhHHHHHHHH
Confidence 35567777765 55667788888888876 322 445544 3688888888888777999999999
Q ss_pred HHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 044095 245 AVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKE 292 (308)
Q Consensus 245 ~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~ 292 (308)
..|-.+-...+..---..+.+++.-.++-+ +...+.-+-+.|+.+-+
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILE 394 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 999876554332211111334333233221 44455555566655543
No 158
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=34.25 E-value=68 Score=28.31 Aligned_cols=60 Identities=22% Similarity=0.238 Sum_probs=44.3
Q ss_pred HHHHHHhCcHHHHHHHHhccC--------------hhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhc
Q 044095 171 RRVAVEAGAVGAVIEVVAELD--------------AAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMG 230 (308)
Q Consensus 171 r~~iV~aGAVp~LVeLL~~~s--------------~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr 230 (308)
..+-++.=.|..+-.+|.+.- -.+.=+||.+|..++..+-|...|+.|..+|+.||+.|-
T Consensus 73 ~q~~~e~~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~ 146 (149)
T PF12331_consen 73 DQKNVENYIIDRVTNLLSEPPKVDEGWAPYTPAEICTLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALH 146 (149)
T ss_pred hhhhHHHHHHHHHHHHccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHH
Confidence 344555556666666765321 133446888889999999999999999999999999874
No 159
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=33.98 E-value=2.7e+02 Score=29.58 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=27.1
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcC-hhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTV-AEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGG 251 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~-~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~ 251 (308)
||.++++|..|.+....-.|+.-|-.||.+ .|-...| +-.|+++|..-.....+..=.+|..|-..+
T Consensus 60 Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv------aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d 127 (556)
T PF05918_consen 60 AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV------ADVLVQLLQTDDPVELDAVKNSLMSLLKQD 127 (556)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH------HHHHHHHTT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH------HHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 344555555554444454555555555543 1222222 234555555433333333335555555443
No 160
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=33.34 E-value=1.1e+02 Score=26.65 Aligned_cols=68 Identities=9% Similarity=0.073 Sum_probs=51.3
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGG 250 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~ 250 (308)
.++.|...|.|.+..+...|+-+|..|... |-..+. +..+..++..|.+..+.-++.|...+..+...
T Consensus 26 ~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~--d~ik~k--~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 26 YLPNLYKCLRDEDPLVRKTALLVLSHLILE--DMIKVK--GQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--Cceeeh--hhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 367888888888899999999999999863 211111 22347778888888889999999999888765
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.98 E-value=2.5e+02 Score=32.09 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=14.8
Q ss_pred ccccccCCCCCCCCCCCCCCCCC
Q 044095 76 FTQWKFPLPTSPLHPRFRTDPKP 98 (308)
Q Consensus 76 ~~~~~~~~~~~p~~~~~~~~~~~ 98 (308)
+++|-.|+|+.|.|+.+...|..
T Consensus 847 ~sgs~~P~~~~~~p~~~~~~~p~ 869 (1049)
T KOG0307|consen 847 TSGSVNPAPYGPGPPGSWNQPPA 869 (1049)
T ss_pred CCCCCCCCCCCCCCCCcccCCCc
Confidence 56788888866666666544433
No 162
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=32.89 E-value=2.4e+02 Score=27.21 Aligned_cols=116 Identities=14% Similarity=0.014 Sum_probs=71.7
Q ss_pred cHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcH-------HHHHHHh-cCCCHHHHHHHH
Q 044095 170 NRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAV-------PVMVTMM-GQMAGRGKEYAI 241 (308)
Q Consensus 170 Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaI-------p~LV~lL-r~gS~~~KE~AV 241 (308)
-..-......||..+..+..|++--+--|..|+..+-.+++|-.-|+....-+ ..+|.-| ++-|.|==+|-+
T Consensus 131 vi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhII 210 (262)
T PF04078_consen 131 VISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHII 210 (262)
T ss_dssp HHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 34455667777777777777777777789999999999999988777544322 2333322 346888889999
Q ss_pred HHHHHHhcCCcchh--h----ccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 044095 242 SVLAVIYGGGDQLV--V----AAPPEEVARAVELALQGNCTPRGRRKGTQLLKSL 290 (308)
Q Consensus 242 a~L~sLC~~~~~~v--~----~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL 290 (308)
.+-..||.+.+.+. + +.++.+... -.+.+ .+..|+-=.+|+..+
T Consensus 211 rCYlRLsdnprar~aL~~~LP~~Lrd~~f~---~~l~~--D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 211 RCYLRLSDNPRAREALRQCLPDQLRDGTFS---NILKD--DPSTKRWLQQLLSNL 260 (262)
T ss_dssp HHHHHHTTSTTHHHHHHHHS-GGGTSSTTT---TGGCS---HHHHHHHHHHHHHT
T ss_pred HHHHHHccCHHHHHHHHHhCcHHHhcHHHH---HHHhc--CHHHHHHHHHHHHHh
Confidence 99999998775322 1 122222211 12233 566666666776654
No 163
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=31.76 E-value=83 Score=26.69 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=45.9
Q ss_pred ccchHHHHHHHhCCCCCCCCCcHHHHHH-------HhcCC-CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHh
Q 044095 135 RLAALYLLERSLLPNPPSDQACQPELMR-------ALCLA-ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMC 206 (308)
Q Consensus 135 ~~~AI~lLV~LL~~g~~~~k~~a~a~l~-------aL~~~-~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La 206 (308)
.-..|..|+++|.... + ..+++ -++.+ ++-|..+-+.|+=..+++|+...+.+++.+||-.+-.|-
T Consensus 41 ~~~llk~L~~lL~~s~--d----~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSD--D----PTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp GGHHHHHHHHHH-SHH--H----HHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCC--C----cceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3468999999995432 1 12222 24433 444555567899999999999999999999998887764
Q ss_pred c
Q 044095 207 T 207 (308)
Q Consensus 207 ~ 207 (308)
.
T Consensus 115 ~ 115 (119)
T PF11698_consen 115 V 115 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=31.59 E-value=1.1e+02 Score=28.41 Aligned_cols=6 Identities=50% Similarity=0.540 Sum_probs=3.1
Q ss_pred cccccc
Q 044095 73 SQSFTQ 78 (308)
Q Consensus 73 ~~~~~~ 78 (308)
+.|||=
T Consensus 194 gsSFTf 199 (205)
T PF12238_consen 194 GSSFTF 199 (205)
T ss_pred CCceec
Confidence 455653
No 165
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=31.13 E-value=36 Score=29.23 Aligned_cols=109 Identities=11% Similarity=0.096 Sum_probs=57.0
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHHhcCh--hhHHHHHhccCcHHHHHHHhcCCCH---------HHHHHHHHHHHH
Q 044095 178 GAVGAVIEVVAELDAAAGERALAALELMCTVA--EGAEETRAHALAVPVMVTMMGQMAG---------RGKEYAISVLAV 246 (308)
Q Consensus 178 GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~--eGr~aI~~~~gaIp~LV~lLr~gS~---------~~KE~AVa~L~s 246 (308)
....-+|+.|.+..... +.+.-|...-... +=...+.+ .||+..|+++|..-.. .....++..|-.
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~-~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLE-LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-H-HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhcc-CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 34555666665432221 3333333322221 22445555 4789999999886211 233446778877
Q ss_pred HhcCCcchh-hccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 044095 247 IYGGGDQLV-VAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 247 LC~~~~~~v-~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~ 291 (308)
|+.+..... +..-...+..+...+... ..++|.-|.+||-.++
T Consensus 143 l~n~~~G~~~v~~~~~~v~~i~~~L~s~--~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNTKYGLEAVLSHPDSVNLIALSLDSP--NIKTRKLALEILAALC 186 (187)
T ss_dssp HTSSHHHHHHHHCSSSHHHHHHHT--TT--SHHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHcCcHHHHHHHHHHCCC--CHHHHHHHHHHHHHHH
Confidence 776543222 122233344443333333 7899999999998775
No 166
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=31.05 E-value=1.4e+02 Score=31.72 Aligned_cols=61 Identities=15% Similarity=0.035 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcc
Q 044095 192 AAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQ 253 (308)
Q Consensus 192 ~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~ 253 (308)
-.....++.+|..|+.|..-.-+..- ...||.|.++|-+.-.+-|+.+..+|..+|.--++
T Consensus 268 WrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN 328 (569)
T KOG1242|consen 268 WRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN 328 (569)
T ss_pred hhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc
Confidence 35667799999999998877777766 67999999999999999999999999999985544
No 167
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=30.85 E-value=1.7e+02 Score=25.23 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=52.0
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchh-hccCCcc-HHHHHHHHHh---C-CCCHHHHHHHHHHHHHHHhcC
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLV-VAAPPEE-VARAVELALQ---G-NCTPRGRRKGTQLLKSLKEYG 294 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v-~~a~~~g-v~~Ll~Lllq---g-~cS~raKrKA~~LLklL~~~~ 294 (308)
++..|.+.|..+++...-+|+.+|=.+-.+++... .++.... .-.++.++.. | ......|+|..+|++.-.+.-
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 57778899998999888999999988888887654 3344444 3356555532 2 135788899888888766543
No 168
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=30.19 E-value=1.7e+02 Score=32.45 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=2.9
Q ss_pred HhHhccC
Q 044095 124 ELQLSSG 130 (308)
Q Consensus 124 ~l~lss~ 130 (308)
+|.++++
T Consensus 1067 Els~~~~ 1073 (1106)
T KOG0162|consen 1067 ELSFKKG 1073 (1106)
T ss_pred cccccCC
Confidence 3444443
No 169
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=30.18 E-value=97 Score=34.20 Aligned_cols=103 Identities=13% Similarity=0.132 Sum_probs=63.1
Q ss_pred HHHHHHhCCCCCCCCCcHHHHHHHhcCCCCcHHHHHHh--CcHHHHHHHH----hccChhHHHHHHHHHHHHhcCh----
Q 044095 140 YLLERSLLPNPPSDQACQPELMRALCLAESNRRVAVEA--GAVGAVIEVV----AELDAAAGERALAALELMCTVA---- 209 (308)
Q Consensus 140 ~lLV~LL~~g~~~~k~~a~a~l~aL~~~~~Nr~~iV~a--GAVp~LVeLL----~~~s~~~~E~ALAiL~~La~~~---- 209 (308)
..++.||...+..-+.+--.+.+||..+-.....+++. .-|..||++| .|...-+.-+|+-++..+..-.
T Consensus 302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~ 381 (1128)
T COG5098 302 EHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTV 381 (1128)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccccc
Confidence 34445555555444433335555665443333345541 2344555555 5677889999999999887532
Q ss_pred hhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 044095 210 EGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIY 248 (308)
Q Consensus 210 eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC 248 (308)
.-|.++ +..+++-|.+.|.--|.+|+.++.-|-
T Consensus 382 ~~r~ev------~~lv~r~lqDrss~VRrnaikl~SkLL 414 (1128)
T COG5098 382 GRRHEV------IRLVGRRLQDRSSVVRRNAIKLCSKLL 414 (1128)
T ss_pred chHHHH------HHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 334444 455677788888888899998887764
No 170
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=29.73 E-value=1.2e+02 Score=31.67 Aligned_cols=127 Identities=19% Similarity=0.190 Sum_probs=70.2
Q ss_pred CChHHHHHHHHhHhccCCC---CcccchHHHHHHHhCCCCCCCCCcH-HHHHHH----hc-----CCCCcHHHHHHhCcH
Q 044095 114 TSLQELFHLAELQLSSGSD---SDRLAALYLLERSLLPNPPSDQACQ-PELMRA----LC-----LAESNRRVAVEAGAV 180 (308)
Q Consensus 114 ~~~~~~f~l~~l~lss~~i---~~~~~AI~lLV~LL~~g~~~~k~~a-~a~l~a----L~-----~~~~Nr~~iV~aGAV 180 (308)
.+...++.+.+...+.... ......+.+..++|.+=....+++. +.++.. +| .++++...|.
T Consensus 257 n~~~~~~~l~e~~~~~~~~~~~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL----- 331 (516)
T KOG2956|consen 257 NETERLSRLEEYSTDDSMDQLTPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEIL----- 331 (516)
T ss_pred cchhhhhhchhhccCcchhhCCCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHH-----
Confidence 3556777777766654431 2344677777777774332233321 344442 33 3455666654
Q ss_pred HHHHHHHhc-cChhHHHHHHHHHHHHhcChhhHHHHHh-ccCcHHHHHHHhcC----CCHHHHHHHHHHHHHH
Q 044095 181 GAVIEVVAE-LDAAAGERALAALELMCTVAEGAEETRA-HALAVPVMVTMMGQ----MAGRGKEYAISVLAVI 247 (308)
Q Consensus 181 p~LVeLL~~-~s~~~~E~ALAiL~~La~~~eGr~aI~~-~~gaIp~LV~lLr~----gS~~~KE~AVa~L~sL 247 (308)
-.+++.|.+ .+...++.||.+|.-+++....| +.+ .+-+|--+++.=.+ ....+-|+|..+|.++
T Consensus 332 ~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~--l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~ 402 (516)
T KOG2956|consen 332 LLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR--LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASH 402 (516)
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHhchHh--hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhh
Confidence 368888887 56777889999999999865433 222 12233333333222 2344555665555443
No 171
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=29.24 E-value=2.5e+02 Score=22.52 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=45.0
Q ss_pred hCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHh-ccCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 044095 177 AGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRA-HALAVPVMVTMMGQMAGRGKEYAISVLAVI 247 (308)
Q Consensus 177 aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~-~~gaIp~LV~lLr~gS~~~KE~AVa~L~sL 247 (308)
.-.|+.++..+.|.+..+...|...|.+++.... .++.. ....+..|.+++.+..++-| +|+..|-.|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr-~~a~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVR-SAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHH-HHHHHHHHH
Confidence 3456777888888888899999999999986543 33332 23466677777766655554 444555443
No 172
>PF11467 LEDGF: Lens epithelium-derived growth factor (LEDGF) ; InterPro: IPR021567 LEDGF is a chromatin-associated protein that protects cells from stress-induced apoptosis. It is the binding partner of HIV-1 integrase in human cells. The integrase binding domain (IBD) of LEDGF is a compact right-handed bundle composed of five alpha-helices. The residues essential for the interaction with the integrase are present in the inter-helical loop regions of the bundle structure. ; PDB: 3F9K_K 3HPG_G 3U88_C 3HPH_H 2B4J_D 1Z9E_A.
Probab=29.20 E-value=1.2e+02 Score=25.15 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcC--CCHHHHHHHHHHHH
Q 044095 193 AAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQ--MAGRGKEYAISVLA 245 (308)
Q Consensus 193 ~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~--gS~~~KE~AVa~L~ 245 (308)
.-+++||.+|+.|...+=-...+..+...|..| +.||+ |+..-++.|..+--
T Consensus 20 ~Dv~kcL~~LdeL~~l~vT~~mL~kn~e~V~Tl-kklRrY~gn~~Ir~KA~~lYn 73 (106)
T PF11467_consen 20 PDVKKCLKALDELKSLQVTSLMLQKNPECVETL-KKLRRYKGNQQIRKKATELYN 73 (106)
T ss_dssp E-HHHHHHHHHHHHTS---HHHHTTTHHHHHHH-HHHTT-TT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHhCHHHHHHH-HHHHHhhccHHHHHHHHHHHH
Confidence 346899999999999988888888877666666 67776 78888777766543
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.06 E-value=1.4e+02 Score=34.28 Aligned_cols=80 Identities=10% Similarity=0.059 Sum_probs=55.3
Q ss_pred CCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhc-----ChhhHHHH----------HhccCcHH----HHHHH
Q 044095 168 ESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCT-----VAEGAEET----------RAHALAVP----VMVTM 228 (308)
Q Consensus 168 ~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~-----~~eGr~aI----------~~~~gaIp----~LV~l 228 (308)
+++|-.=++.+|...|+.+|+|.-.++...|+.+|..+-. .+|....+ ...+..|+ .++.+
T Consensus 632 ~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~ 711 (1387)
T KOG1517|consen 632 DEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLAL 711 (1387)
T ss_pred chhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHH
Confidence 4566667899999999999999888988889999999887 34554333 11233444 67777
Q ss_pred hcCCCHHHHHHHHHHHHHH
Q 044095 229 MGQMAGRGKEYAISVLAVI 247 (308)
Q Consensus 229 Lr~gS~~~KE~AVa~L~sL 247 (308)
+..||.--+..-+..|...
T Consensus 712 vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 712 VSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred HhccchHHHHHHHHHHHHH
Confidence 8888765554444444444
No 174
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=28.65 E-value=3e+02 Score=24.44 Aligned_cols=120 Identities=18% Similarity=0.227 Sum_probs=46.5
Q ss_pred cHHHHH-HhCcHHHHHHHHhcc---C---------------hhHHHHHHHHHHHHhcC-hhhHHHHHhccCcHHHHHHHh
Q 044095 170 NRRVAV-EAGAVGAVIEVVAEL---D---------------AAAGERALAALELMCTV-AEGAEETRAHALAVPVMVTMM 229 (308)
Q Consensus 170 Nr~~iV-~aGAVp~LVeLL~~~---s---------------~~~~E~ALAiL~~La~~-~eGr~aI~~~~gaIp~LV~lL 229 (308)
+|.++. ..|++..++++|... . .++...+..+|..++.. .++...+..+ +..++..+
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~---~~~l~~~~ 110 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH---LDFLISIF 110 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH---HH-----H
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH---HhHHHHHH
Confidence 455554 469999999999632 1 24567788899999885 6778888774 44445544
Q ss_pred cC-CCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcCCCC
Q 044095 230 GQ-MAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLKEYGQPD 297 (308)
Q Consensus 230 r~-gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~e~~ 297 (308)
.. ....+ =.++.+|..+-.++.+......+.-|-..+.++..-| | ..+-..+|+.|..+.+..
T Consensus 111 ~~~~~~~~-~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~ll~~~g---r-~~~~L~~L~~lc~~~g~p 174 (207)
T PF01365_consen 111 MQLQIGYG-LGALDVLTEIFRDNPELCESISEEHIEKFIELLRKHG---R-QPRYLDFLSSLCVCNGNP 174 (207)
T ss_dssp HCCCH-TT-HHHHHHHHHHHTT-----------------------------------------------
T ss_pred HHhhccCC-chHHHHHHHHHHCcHHHHHHhhHHHHHHHHHHHHHcC---C-ChHHHHHHhhhcccCCcC
Confidence 43 21111 2356677777776654333333333445555554311 1 122336666666665543
No 175
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=28.62 E-value=1.9e+02 Score=28.83 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=51.8
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCc
Q 044095 178 GAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGD 252 (308)
Q Consensus 178 GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~ 252 (308)
-.+|.|++...+.+++.++.-+.+|..|..+---..-+.+.+..+|.|++-|.-....-+..++.+|..+.....
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 356777777766555566777777777776533222333444578888888877777788889999988877653
No 176
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.32 E-value=1.7e+02 Score=32.12 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=51.3
Q ss_pred hHHHHHHHhCCCCCCCCCcHHHHHHHh-cCCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcCh
Q 044095 138 ALYLLERSLLPNPPSDQACQPELMRAL-CLAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVA 209 (308)
Q Consensus 138 AI~lLV~LL~~g~~~~k~~a~a~l~aL-~~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~ 209 (308)
.+-.|.+.|+.+..-.+ .++.-.+ ..++.|..-...+|-+..|-+++.|.+..++..|+++|..+....
T Consensus 122 ~~~Pl~~~l~d~~~yvR---ktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVR---KTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred HHHHHHHhccCCChhHH---HHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 55666666776653333 1222222 266788888999999999999999988899999999999988754
No 177
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=28.20 E-value=1.4e+02 Score=23.93 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=45.7
Q ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 044095 220 LAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSL 290 (308)
Q Consensus 220 gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL 290 (308)
..|..+.+.+++...+.|=.++.++=.|+++.+.+...........++.-..+ .+.+..|+|-..|++.-
T Consensus 37 ~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~-~~~~~~r~kl~rl~~iW 106 (114)
T cd03562 37 EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYE-KVDEKTRKKLERLLNIW 106 (114)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHc
Confidence 35667777888888899999999999999987655433333332333333333 34788887766666543
No 178
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=27.67 E-value=1e+02 Score=32.72 Aligned_cols=47 Identities=6% Similarity=0.042 Sum_probs=26.5
Q ss_pred cchHHHHHHHhCCCCCCCCCcHHHHHH---HhcCC-CCcHHHHHHhCcHHHHHHHHhcc
Q 044095 136 LAALYLLERSLLPNPPSDQACQPELMR---ALCLA-ESNRRVAVEAGAVGAVIEVVAEL 190 (308)
Q Consensus 136 ~~AI~lLV~LL~~g~~~~k~~a~a~l~---aL~~~-~~Nr~~iV~aGAVp~LVeLL~~~ 190 (308)
..||..+.+|.+++....+ ..+++ .||.+ .++..+++ .+|++||...
T Consensus 58 ~~Ai~a~~DLcEDed~~iR---~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~td 108 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIR---KQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTD 108 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHH---HHHHHHGGGG--T--T-HHHHH-----HHHHHHTT--
T ss_pred HHHHHHHHHHHhcccHHHH---HHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcc
Confidence 3689999999987664333 34444 45554 45566665 5888888743
No 179
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=27.38 E-value=3.8e+02 Score=27.84 Aligned_cols=6 Identities=50% Similarity=0.717 Sum_probs=2.4
Q ss_pred CCCCCC
Q 044095 87 PLHPRF 92 (308)
Q Consensus 87 p~~~~~ 92 (308)
|+|+.+
T Consensus 388 pphp~p 393 (518)
T KOG1830|consen 388 PPHPLP 393 (518)
T ss_pred CCCCCC
Confidence 344443
No 180
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=26.99 E-value=1.9e+02 Score=30.51 Aligned_cols=62 Identities=37% Similarity=0.681 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044095 31 PTNSHSPPLPLTPEEPPPPPPPPPPPPPPPHQPESSSSSSSTSQSFTQWKFPLPTSPLHPRFRTDPKPEPDLPPKPLPP 109 (308)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~p 109 (308)
++.+++++-++-..++|..+||+||++|.+. ++-.=|.|....|... .+.++.++|.++.-+
T Consensus 408 p~~PpPPPPs~~g~~Pp~apPppPPPPPmPs---------------~gagppPPP~~~~~Pp--~~aga~aPp~p~~~~ 469 (569)
T KOG3671|consen 408 PVPPPPPPPSLPGSAPPSAPPPPPPPPPMPS---------------TGAGPPPPPSAPIAPP--QGAGAAAPPAPPARP 469 (569)
T ss_pred CCCCCCCCCcccCCCCCCCCCCCCcCCCCCc---------------cCCCCCCCCCccCCCC--CccCCCCCCCCCCcc
No 181
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.43 E-value=6.4e+02 Score=28.15 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=82.8
Q ss_pred cchHHHHHHHhCC-CCCCCCCc-HHHHHHHhcCCCCcHHHHHHhCcHHHHHHHHh----ccChhHHHHHHHHHHHHhcCh
Q 044095 136 LAALYLLERSLLP-NPPSDQAC-QPELMRALCLAESNRRVAVEAGAVGAVIEVVA----ELDAAAGERALAALELMCTVA 209 (308)
Q Consensus 136 ~~AI~lLV~LL~~-g~~~~k~~-a~a~l~aL~~~~~Nr~~iV~aGAVp~LVeLL~----~~s~~~~E~ALAiL~~La~~~ 209 (308)
...+|.|+++|.+ |.....-+ ..+..++.|+- =-...++...|+..+.++. +.+..-.|.|+-++...-.-+
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~--l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp 395 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLM--LFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGP 395 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHH--HHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCC
Confidence 4678999999875 33212111 12223333311 0112222334445555554 444444555544444433322
Q ss_pred --hhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhccCCcc-HHHHHHHHHhC-CCCHHHHHHHHH
Q 044095 210 --EGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEE-VARAVELALQG-NCTPRGRRKGTQ 285 (308)
Q Consensus 210 --eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~g-v~~Ll~Lllqg-~cS~raKrKA~~ 285 (308)
+-...|.. ++++.++.+|.+.+--.|+-+...|..+|..-.++. .... -..++..+++| ...+|.-.++..
T Consensus 396 ~~~~Lt~iV~--qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~---~n~~~l~~~l~~l~~gL~DePrva~N~CW 470 (859)
T KOG1241|consen 396 EPDKLTPIVI--QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI---INQELLQSKLSALLEGLNDEPRVASNVCW 470 (859)
T ss_pred chhhhhHHHh--hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc---ccHhhhhHHHHHHHHHhhhCchHHHHHHH
Confidence 22333333 689999999999899999999999999998654332 1111 11222233333 226777777775
Q ss_pred HHHHHH-hcCCCCCcc
Q 044095 286 LLKSLK-EYGQPDTTQ 300 (308)
Q Consensus 286 LLklL~-~~~e~~~~~ 300 (308)
-+..|. .+++...++
T Consensus 471 Af~~Laea~~eA~~s~ 486 (859)
T KOG1241|consen 471 AFISLAEAAYEAAVSN 486 (859)
T ss_pred HHHHHHHHHHHhccCC
Confidence 555444 345544444
No 182
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.28 E-value=2.9e+02 Score=23.15 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=49.5
Q ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchh-hccCCcc-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcC
Q 044095 221 AVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLV-VAAPPEE-VARAVELALQGNCTPRGRRKGTQLLKSLKEYG 294 (308)
Q Consensus 221 aIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v-~~a~~~g-v~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~ 294 (308)
++..|-+.|..+++...-+|+.+|=.+-.+++... .++.... +-.|+.++..-...+..|+|+.+++......-
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 46678888888999999999999888888876544 3444444 33554444332223347888888887666543
No 183
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=25.48 E-value=6.2e+02 Score=24.48 Aligned_cols=104 Identities=12% Similarity=0.063 Sum_probs=71.2
Q ss_pred HHHHHhcCCC--CcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhcc---CcHHHH----HH-H
Q 044095 159 ELMRALCLAE--SNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHA---LAVPVM----VT-M 228 (308)
Q Consensus 159 a~l~aL~~~~--~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~---gaIp~L----V~-l 228 (308)
++.++|..++ .....+.....||.++.++..+++--+--|+.|+..+-.++.|-.-|+..- -+|..+ |. +
T Consensus 168 GVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~ql 247 (315)
T COG5209 168 GVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQL 247 (315)
T ss_pred HHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666676553 345667778888888888877766666678889999999999977776421 133333 32 2
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCcch--hhccCCcc
Q 044095 229 MGQMAGRGKEYAISVLAVIYGGGDQL--VVAAPPEE 262 (308)
Q Consensus 229 Lr~gS~~~KE~AVa~L~sLC~~~~~~--v~~a~~~g 262 (308)
+..++.|--++|+.+-+.||.....+ ......+|
T Consensus 248 Vs~~~~RLlKh~iRcYlRLsd~p~aR~lL~~~lP~~ 283 (315)
T COG5209 248 VSLGSTRLLKHAIRCYLRLSDKPHARALLSSKLPDG 283 (315)
T ss_pred hhccchhHHHHHHHHheeecCCHhHHHHHhccCCcc
Confidence 33478899999999999998765432 22344555
No 184
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=24.43 E-value=3.8e+02 Score=28.91 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=77.2
Q ss_pred chHHHHHHHhCCCCCCCCCcHHHHHH--HhcCCCCc-HHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhh--
Q 044095 137 AALYLLERSLLPNPPSDQACQPELMR--ALCLAESN-RRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEG-- 211 (308)
Q Consensus 137 ~AI~lLV~LL~~g~~~~k~~a~a~l~--aL~~~~~N-r~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eG-- 211 (308)
....+|+++|..-....+ ..++.+ ++...=.| +..+.+-|.|.+|+.++...++.+....+-+|..|.-..+.
T Consensus 431 ~I~elLi~~Ls~Peimi~--~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~e 508 (743)
T COG5369 431 PIVELLIDALSNPEIMIE--FPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNE 508 (743)
T ss_pred chHHHHHHHhcCccceee--ccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchh
Confidence 455777787775222112 112211 33333345 78899999999999999977788888889999988764322
Q ss_pred HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044095 212 AEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 212 r~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~ 249 (308)
+-...+ .-|+.-++++..+-.-.-++.+..+|-++-+
T Consensus 509 kf~~La-kig~~kvl~~~NDpc~~vq~q~lQilrNftc 545 (743)
T COG5369 509 KFKFLA-KIGVEKVLSYTNDPCFKVQHQVLQILRNFTC 545 (743)
T ss_pred hhhhHH-hcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence 334444 3578999999998888888999999999955
No 185
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.30 E-value=2e+02 Score=30.94 Aligned_cols=81 Identities=6% Similarity=0.019 Sum_probs=58.0
Q ss_pred CCCCcHHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Q 044095 166 LAESNRRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLA 245 (308)
Q Consensus 166 ~~~~Nr~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~ 245 (308)
....|.-..-....-..|+.-|+|.+++++..+|.+|+.+|..++.+--+ -.+-.|.++.++...--++.+.-|.-
T Consensus 365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~----~fl~sLL~~f~e~~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLR----KFLLSLLEMFKEDTKLLEVRGNLIIR 440 (675)
T ss_pred hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHH----HHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence 33456555556677889999999999999999999999999987765221 13344455555555555567888888
Q ss_pred HHhcC
Q 044095 246 VIYGG 250 (308)
Q Consensus 246 sLC~~ 250 (308)
.||..
T Consensus 441 qlC~l 445 (675)
T KOG0212|consen 441 QLCLL 445 (675)
T ss_pred HHHHH
Confidence 88873
No 186
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=23.34 E-value=1.6e+02 Score=31.56 Aligned_cols=118 Identities=8% Similarity=0.001 Sum_probs=66.9
Q ss_pred HHHHHHhCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhh-HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044095 171 RRVAVEAGAVGAVIEVVAELDAAAGERALAALELMCTVAEG-AEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 171 r~~iV~aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eG-r~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~ 249 (308)
|.-+.+.-.+..|+++|.+.+-...--++....++..--++ ++-+.+ .+.|-.||.++..--+.-+.+.+.+|..|-.
T Consensus 424 RTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~sKDdaLqans~wvlrHlmy 502 (743)
T COG5369 424 RTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMSKDDALQANSEWVLRHLMY 502 (743)
T ss_pred HhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhcchhhhhhcchhhhhhhhh
Confidence 44455666788888888763322222344444444443222 444445 5789999999986555556778888888866
Q ss_pred CCcch--hhccCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 044095 250 GGDQL--VVAAPPEEVARAVELALQGNCTPRGRRKGTQLLKSLK 291 (308)
Q Consensus 250 ~~~~~--v~~a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~ 291 (308)
++.+. ..-...-|+..++++. .|.-...++...++|+.+-
T Consensus 503 ncq~~ekf~~Lakig~~kvl~~~--NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 503 NCQKNEKFKFLAKIGVEKVLSYT--NDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred cCcchhhhhhHHhcCHHHHHHHh--cCcccccHHHHHHHHHhcc
Confidence 66432 2222333444443322 2223445566667776654
No 187
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=23.11 E-value=4.2e+02 Score=28.99 Aligned_cols=98 Identities=17% Similarity=0.139 Sum_probs=51.4
Q ss_pred CcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCcchhhc
Q 044095 178 GAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYGGGDQLVVA 257 (308)
Q Consensus 178 GAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~~~~~~v~~ 257 (308)
|.+.-++.-+.+.+..+.-+++.+|+.+..+-.--.+... .+.+.-|.+.+-+.-..-|-.||.+| |...+.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L---~~~Qe~---- 162 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVL---CYYQEM---- 162 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHH---HHHHhc----
Confidence 4444444444455677888999999999876432223322 24455555544443333444455544 443210
Q ss_pred cCCcc--HHHHHHHHHhCCCCHHHHHHH
Q 044095 258 APPEE--VARAVELALQGNCTPRGRRKG 283 (308)
Q Consensus 258 a~~~g--v~~Ll~Lllqg~cS~raKrKA 283 (308)
-..+. +..++..++|.|.+...||-|
T Consensus 163 ~~neen~~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 163 ELNEENRIVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred cCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 11111 333555667777677766654
No 188
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=22.94 E-value=2e+02 Score=25.52 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=46.8
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcC--CCHH--H---HHHHHHHHHHHhcCC
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQ--MAGR--G---KEYAISVLAVIYGGG 251 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~--gS~~--~---KE~AVa~L~sLC~~~ 251 (308)
+||.||.|..|.+....+.|..+|..|..-.|+-..-.- ..||..-.+.-++ +... . ...-.+-|+.+++.+
T Consensus 46 cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~-~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~ 124 (187)
T PF12830_consen 46 CVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESRY-SEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSN 124 (187)
T ss_pred HHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcc
Confidence 578899999888899999999999999886666444433 2245555554443 1111 1 344456666776644
Q ss_pred c
Q 044095 252 D 252 (308)
Q Consensus 252 ~ 252 (308)
+
T Consensus 125 r 125 (187)
T PF12830_consen 125 R 125 (187)
T ss_pred c
Confidence 3
No 189
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=22.89 E-value=2.9e+02 Score=22.36 Aligned_cols=66 Identities=8% Similarity=0.068 Sum_probs=40.4
Q ss_pred HHHHHHHHh-ccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcC-CCHHH-HHHHHHHHHHHhcCC
Q 044095 180 VGAVIEVVA-ELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQ-MAGRG-KEYAISVLAVIYGGG 251 (308)
Q Consensus 180 Vp~LVeLL~-~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~-gS~~~-KE~AVa~L~sLC~~~ 251 (308)
+|.+.+.|. ....+.+--+.-++..|+.. ..+.+ ..+..+++.+-. -.... ++.++.+|..||...
T Consensus 8 LP~l~~~L~~s~~~d~~~a~ymIl~~La~k----~~L~~--~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 8 LPFLLKGLKSSSSPDLQAAAYMILSVLASK----VPLSD--EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHccCCcHHHHHHHHHHHHHHHhh----cCCcH--HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 345555555 44567777788888888873 33322 244455554433 23333 378999999999754
No 190
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=22.74 E-value=1.1e+03 Score=26.37 Aligned_cols=66 Identities=9% Similarity=0.088 Sum_probs=44.9
Q ss_pred hCcHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Q 044095 177 AGAVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGRGKEYAISVLAVIYG 249 (308)
Q Consensus 177 aGAVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~~KE~AVa~L~sLC~ 249 (308)
.++.+.|++-+.+....+.|.++.++...+. .......++.+.+.+++++++.|..+...|-..-.
T Consensus 335 ~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~ 400 (815)
T KOG1820|consen 335 KNVFPSLLDRLKEKKSELRDALLKALDAILN-------STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLR 400 (815)
T ss_pred HhhcchHHHHhhhccHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence 3556666666666667777777777776665 11222356778888999999999988776655543
No 191
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=22.27 E-value=1.2e+02 Score=29.55 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=4.7
Q ss_pred HHHHHHHHh
Q 044095 284 TQLLKSLKE 292 (308)
Q Consensus 284 ~~LLklL~~ 292 (308)
.+|.++|.+
T Consensus 271 ~eL~~lL~~ 279 (322)
T PLN02396 271 EELSMILQR 279 (322)
T ss_pred HHHHHHHHH
Confidence 455555554
No 192
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=22.10 E-value=9.2e+02 Score=26.18 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=51.9
Q ss_pred cHHHHHHHHhccChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCH----HHHHHHHHHHHHHhc
Q 044095 179 AVGAVIEVVAELDAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAG----RGKEYAISVLAVIYG 249 (308)
Q Consensus 179 AVp~LVeLL~~~s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~----~~KE~AVa~L~sLC~ 249 (308)
.+..+.+++.+++....-+|+.-|..|+.+..-..++.+.. ++..|..++++|.. .-...++.++..+-.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~-gl~~L~~liedg~~~~~~~~L~~~L~af~elme 157 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCS-GLELLFSLIEDGRVCMSSELLSTSLRAFSELME 157 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcc-hHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 34577888888777666669999999999999889998854 78999999998644 344445555555433
No 193
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=21.76 E-value=3.1e+02 Score=22.48 Aligned_cols=93 Identities=14% Similarity=0.200 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCcchhhccCCccHH---HHH
Q 044095 194 AGERALAALELMCTVAEGAEETRAHALAVPVMVTMM---GQMAGRGKEYAISVLAVIYGGGDQLVVAAPPEEVA---RAV 267 (308)
Q Consensus 194 ~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lL---r~gS~~~KE~AVa~L~sLC~~~~~~v~~a~~~gv~---~Ll 267 (308)
.....+.-+..++-..+....| +..|.+.| ...+-+.+-.|+.+|-.|+.++.+.++.-....+. .+.
T Consensus 19 p~~~~l~eIa~~t~~~~~~~~I------~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~ 92 (125)
T PF01417_consen 19 PPGKLLAEIAQLTYNSKDCQEI------MDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQ 92 (125)
T ss_dssp --HHHHHHHHHHTTSCHHHHHH------HHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGG
T ss_pred cCHHHHHHHHHHHhccccHHHH------HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcc
Confidence 3445555666666554444444 44566676 33467788889999999998886654433333322 221
Q ss_pred HHHH-hCCCCH---HHHHHHHHHHHHHHh
Q 044095 268 ELAL-QGNCTP---RGRRKGTQLLKSLKE 292 (308)
Q Consensus 268 ~Lll-qg~cS~---raKrKA~~LLklL~~ 292 (308)
..-- +.++.. ..|++|.+++++|.+
T Consensus 93 ~f~~~d~~g~d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 93 DFQYVDPKGKDQGQNVREKAKEILELLND 121 (125)
T ss_dssp G---BBTTSTBHHHHHHHHHHHHHHHHTS
T ss_pred eeeccCCCCccHHHHHHHHHHHHHHHhCC
Confidence 1111 111223 488999999999975
No 194
>PLN03205 ATR interacting protein; Provisional
Probab=21.07 E-value=2.7e+02 Score=29.02 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhcCCcchh-hc-cCCccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcC
Q 044095 234 GRGKEYAISVLAVIYGGGDQLV-VA-APPEEVARAVELALQGNCTPRGRRKGTQLLKSLKEYG 294 (308)
Q Consensus 234 ~~~KE~AVa~L~sLC~~~~~~v-~~-a~~~gv~~Ll~Lllqg~cS~raKrKA~~LLklL~~~~ 294 (308)
+.-|-.|++|+-.|-...+... ++ .....|+.-+..+++-+..-+.|+.|..||-+|-.|.
T Consensus 386 E~VrLEAvSIMnVIlmssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCp 448 (652)
T PLN03205 386 EDVKLEALSIMNIIVMSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCP 448 (652)
T ss_pred hheeeehhhhhHHhhhccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCc
Confidence 3445568888777765544322 11 1122244333344443337888899999888876654
No 195
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.05 E-value=6.7e+02 Score=29.24 Aligned_cols=93 Identities=8% Similarity=0.093 Sum_probs=65.0
Q ss_pred HHHHHHhcCC-CCcHHHHHHhCcHHHHHHHHhcc-ChhHHHHHHHHHHHHhcChhhHHHHHhccCcHHHHHHHhcCCCHH
Q 044095 158 PELMRALCLA-ESNRRVAVEAGAVGAVIEVVAEL-DAAAGERALAALELMCTVAEGAEETRAHALAVPVMVTMMGQMAGR 235 (308)
Q Consensus 158 ~a~l~aL~~~-~~Nr~~iV~aGAVp~LVeLL~~~-s~~~~E~ALAiL~~La~~~eGr~aI~~~~gaIp~LV~lLr~gS~~ 235 (308)
+.+|+.++.. +.--....+.+.|..-++.|.+. ..-+..=.+--|..|-.+-+-..-.+...+|..-|..+|.+...+
T Consensus 578 AFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpE 657 (1387)
T KOG1517|consen 578 AFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPE 657 (1387)
T ss_pred HHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHH
Confidence 3455555532 33445567778888888888774 344445566667777776443334444478999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 044095 236 GKEYAISVLAVIYGG 250 (308)
Q Consensus 236 ~KE~AVa~L~sLC~~ 250 (308)
-|-.||-+|-.+-.+
T Consensus 658 VRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 658 VRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988775
No 196
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=20.12 E-value=2.7e+02 Score=28.80 Aligned_cols=10 Identities=60% Similarity=1.168 Sum_probs=3.9
Q ss_pred CCCCCCCCCC
Q 044095 45 EPPPPPPPPP 54 (308)
Q Consensus 45 ~~~~~~~~~~ 54 (308)
.+|-++||-|
T Consensus 479 ~~pls~PPlP 488 (563)
T KOG1785|consen 479 EPPLSLPPLP 488 (563)
T ss_pred cCCCCCCCCC
Confidence 3333444433
Done!