Your job contains 1 sequence.
>044097
MALSLSSSPLLLTPDLNRSDSLSRLSYPTPRLRVSDKQCSIKTIRLSRTHINPTAHNDRQ
PLHLHYKLPLQLASSSVLLFLGFGARICSAGPTQLPLTPAVNQQDQLLDQDTEQKEDEKL
NQEFENWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNL
STPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRW
GTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALL
ANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP
AASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEE
LLKGKPSVDTNLIAGVPPR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044097
(439 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2206194 - symbol:AT1G31410 species:3702 "Arabi... 562 1.9e-110 3
TIGR_CMR|BA_1300 - symbol:BA_1300 "spermidine/putrescine ... 162 3.4e-09 1
UNIPROTKB|P31133 - symbol:potF "putrescine ABC transporte... 114 3.5e-07 2
TIGR_CMR|SO_1270 - symbol:SO_1270 "polyamine ABC transpor... 113 2.3e-06 2
UNIPROTKB|Q9KS37 - symbol:VC1424 "Spermidine/putrescine A... 130 1.4e-05 1
TIGR_CMR|VC_1424 - symbol:VC_1424 "spermidine/putrescine ... 130 1.4e-05 1
TIGR_CMR|CPS_0103 - symbol:CPS_0103 "putrescine ABC trans... 104 1.9e-05 2
UNIPROTKB|Q9KKJ4 - symbol:VCA1113 "Spermidine/putrescine ... 125 5.0e-05 1
TIGR_CMR|VC_A1113 - symbol:VC_A1113 "spermidine/putrescin... 125 5.0e-05 1
UNIPROTKB|P0AFK9 - symbol:potD "putrescine / spermidine A... 121 0.00014 1
>TAIR|locus:2206194 [details] [associations]
symbol:AT1G31410 species:3702 "Arabidopsis thaliana"
[GO:0005215 "transporter activity" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006810 "transport" evidence=IEA]
[GO:0009941 "chloroplast envelope" evidence=IDA] InterPro:IPR001188
PRINTS:PR00909 EMBL:CP002684 GO:GO:0009941 GO:GO:0042597
eggNOG:COG0687 GO:GO:0019808 GO:GO:0015846 EMBL:BT015412
IPI:IPI00520881 RefSeq:NP_174426.2 UniGene:At.40347
ProteinModelPortal:Q66GJ0 PaxDb:Q66GJ0 PRIDE:Q66GJ0
EnsemblPlants:AT1G31410.1 GeneID:840031 KEGG:ath:AT1G31410
TAIR:At1g31410 InParanoid:Q66GJ0 OMA:GTMVIAY PhylomeDB:Q66GJ0
ProtClustDB:CLSN2680340 Genevestigator:Q66GJ0 Uniprot:Q66GJ0
Length = 524
Score = 562 (202.9 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 106/155 (68%), Positives = 126/155 (81%)
Query: 286 VAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV 345
V GG++AV++NLA L Q+RLFDS +YLKAF +GDVWV VGWSSDV+P KRMSNV V+V
Sbjct: 306 VPGGRLAVEKNLASLMKQIRLFDSNNYLKAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIV 365
Query: 346 PKSGASLWADLWAIPAASRL--ETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIP 403
PKSGA+LWADLWAIPA S E +Q GG+VRGPSPLI+QWIEFCLQ AR+LPF +EVIP
Sbjct: 366 PKSGATLWADLWAIPAVSDSGKEAEQRGGRVRGPSPLINQWIEFCLQPARSLPFTREVIP 425
Query: 404 GASPSALESTLVKLPEELLKGKPSVDTNLIAGVPP 438
GASPSAL+ LV PE+ K + +DTNL+ GVPP
Sbjct: 426 GASPSALDGPLVTEPEKTKKDRTKLDTNLVTGVPP 460
Score = 394 (143.8 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 77/119 (64%), Positives = 88/119 (73%)
Query: 187 LSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIG 246
LSFAIK++ IEP+ EDQDW+K LS KWK+YLR N AGE P G+ WA PYRWGTM I
Sbjct: 188 LSFAIKEKLIEPMKGIEDQDWYKGLSDKWKIYLRRNYAGEKAPDGETWAVPYRWGTMVIA 247
Query: 247 YKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGK-IAVQQNLALLANQV 304
YKKSKFQN+ LAPIEDW D W PELAGRI+MVNSPREV+ A K + N L +QV
Sbjct: 248 YKKSKFQNYKLAPIEDWADLWRPELAGRIAMVNSPREVVGAVLKYMRASYNTTDLDSQV 306
Score = 169 (64.5 bits), Expect = 1.9e-110, Sum P(3) = 1.9e-110
Identities = 39/118 (33%), Positives = 64/118 (54%)
Query: 74 SSSVLLFLGFGA-RICSAGPTQL---PLTPAVNXXXXXXXXXXXXXXXXXXNQ----EFE 125
S+S +LF+G + R+CS ++ P+ N + +FE
Sbjct: 47 SASTVLFIGLSSLRVCSPASARILPPPIVVTENEINTETVAGEENLNEVEDEEKLEADFE 106
Query: 126 NWKWKTYALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTP 183
+K K Y+LTVPL++V+L+ SVP SW+K+FM SQGKR++ + +++ I +LS P
Sbjct: 107 AYKSKVYSLTVPLKLVALRGSVPPSWIKEFMSSQGKRVRLKTQFRGNLEEIFFDLSKP 164
Score = 51 (23.0 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 23/104 (22%), Positives = 39/104 (37%)
Query: 319 GDVW-VAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGP 377
G+ W V W + V+ K + P WADLW A R+ V P
Sbjct: 232 GETWAVPYRWGTMVIAYKKSKFQNYKLAPIED---WADLWRPELAGRI------AMVNSP 282
Query: 378 SPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEEL 421
++ +++ + +V PG A+E L L +++
Sbjct: 283 REVVGAVLKYMRASYNTTDLDSQV-PGGR-LAVEKNLASLMKQI 324
>TIGR_CMR|BA_1300 [details] [associations]
symbol:BA_1300 "spermidine/putrescine ABC transporter,
spermidine/putrescine-binding protein" species:198094 "Bacillus
anthracis str. Ames" [GO:0015417 "polyamine-transporting ATPase
activity" evidence=ISS] [GO:0015847 "putrescine transport"
evidence=ISS] [GO:0015848 "spermidine transport" evidence=ISS]
[GO:0042626 "ATPase activity, coupled to transmembrane movement of
substances" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0042597 KO:K11069 GO:GO:0019808
HOGENOM:HOG000263814 GO:GO:0015846 RefSeq:NP_843768.1
RefSeq:YP_017915.1 RefSeq:YP_027472.1 HSSP:P23861
ProteinModelPortal:Q81TH5 IntAct:Q81TH5 DNASU:1085223
EnsemblBacteria:EBBACT00000008763 EnsemblBacteria:EBBACT00000013649
EnsemblBacteria:EBBACT00000023557 GeneID:1085223 GeneID:2815193
GeneID:2852748 KEGG:ban:BA_1300 KEGG:bar:GBAA_1300 KEGG:bat:BAS1202
OMA:LYSWADY ProtClustDB:CLSK916172
BioCyc:BANT260799:GJAJ-1277-MONOMER
BioCyc:BANT261594:GJ7F-1335-MONOMER Uniprot:Q81TH5
Length = 345
Score = 162 (62.1 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 48/152 (31%), Positives = 67/152 (44%)
Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVA 287
DP K ++ Y WG I Y K K+ AP W D W + G ++++N REV+
Sbjct: 117 DPENK-YSLVYTWGVTGIAYNK-KYVKE--APTS-WTDLWNEKYKGHVTLLNDSREVLGM 171
Query: 288 G----G-----------KIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVL 332
G G K A LL N + FD+ + + F D W+ WS D
Sbjct: 172 GLKKNGFSNSTKDDAQLKTAATDLQKLLPNLLA-FDTDNIKQKFITEDAWIGTVWSGDAA 230
Query: 333 PAVKRMSNVAVVVPKSGASLWADLWAIPAASR 364
K +V VVPK G ++WAD AIP ++
Sbjct: 231 FIAKDNKDVEYVVPKEGGTIWADTLAIPKGAK 262
>UNIPROTKB|P31133 [details] [associations]
symbol:potF "putrescine ABC transporter - periplasmic
binding protein" species:83333 "Escherichia coli K-12" [GO:0019808
"polyamine binding" evidence=IEA] [GO:0015847 "putrescine
transport" evidence=IDA] [GO:0015594 "putrescine-importing ATPase
activity" evidence=RCA;IMP] [GO:0043190 "ATP-binding cassette (ABC)
transporter complex" evidence=RCA] [GO:0042597 "periplasmic space"
evidence=IEA] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0042597 eggNOG:COG0687 GO:GO:0019808
GO:GO:0015594 EMBL:M93239 PIR:F64823 RefSeq:NP_415375.1
RefSeq:YP_489127.1 PDB:1A99 PDBsum:1A99 ProteinModelPortal:P31133
SMR:P31133 DIP:DIP-10531N IntAct:P31133 TCDB:3.A.1.11.2
SWISS-2DPAGE:P31133 PRIDE:P31133 EnsemblBacteria:EBESCT00000000165
EnsemblBacteria:EBESCT00000000166 EnsemblBacteria:EBESCT00000016488
GeneID:12931000 GeneID:945480 KEGG:ecj:Y75_p0827 KEGG:eco:b0854
PATRIC:32116913 EchoBASE:EB1586 EcoGene:EG11629
HOGENOM:HOG000263815 KO:K11073 OMA:HPAEAHA ProtClustDB:PRK10682
BioCyc:EcoCyc:POTF-MONOMER BioCyc:ECOL316407:JW0838-MONOMER
EvolutionaryTrace:P31133 Genevestigator:P31133 Uniprot:P31133
Length = 370
Score = 114 (45.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 297 LALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS------NVAVVVPKSGA 350
L L +R F S+ Y+ GD+ VA+GW+ DV A R NV+ +PK GA
Sbjct: 214 LLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGA 273
Query: 351 SLWADLWAIPAASR 364
+ D++A+PA ++
Sbjct: 274 MAFFDVFAMPADAK 287
Score = 74 (31.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQ---NHNLAPIEDWKDPWWPELAGR-----ISMVN 279
DP K +A PY W T IGY K + N AP++ W PE + +S ++
Sbjct: 124 DPDNK-FAMPYMWATTGIGYNVDKVKAVLGEN-APVDSWDLILKPENLEKLKSCGVSFLD 181
Query: 280 SPREV 284
+P EV
Sbjct: 182 APEEV 186
>TIGR_CMR|SO_1270 [details] [associations]
symbol:SO_1270 "polyamine ABC transporter, periplasmic
polyamine-binding protein" species:211586 "Shewanella oneidensis
MR-1" [GO:0015417 "polyamine-transporting ATPase activity"
evidence=ISS] [GO:0015847 "putrescine transport" evidence=ISS]
[GO:0015848 "spermidine transport" evidence=ISS] [GO:0030288 "outer
membrane-bounded periplasmic space" evidence=ISS]
InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0042597 GO:GO:0019808
HOGENOM:HOG000263815 KO:K11073 GO:GO:0015846 OMA:KRLEKND
ProtClustDB:CLSK906175 RefSeq:NP_716893.1 HSSP:P31133
ProteinModelPortal:Q8EHF3 SMR:Q8EHF3 GeneID:1169090
KEGG:son:SO_1270 PATRIC:23522186 Uniprot:Q8EHF3
Length = 367
Score = 113 (44.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 36/110 (32%), Positives = 52/110 (47%)
Query: 304 VRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM------SNVAVVVPKSGASLWADLW 357
V F S+ Y+ GD+ VA G+S DV A R + + +PK GA+LW D+
Sbjct: 218 VTYFHSSRYISDLANGDICVAYGFSGDVFQAAARADEAGNGNKIGYSIPKEGANLWFDML 277
Query: 358 AIPA-ASRLET--KQIGGQVRGPSPL--IHQWIEFCLQTARALPFKQEVI 402
AIPA A+ +E K I +R P + I ++ + A P E I
Sbjct: 278 AIPADATNVENAHKLINYLLR-PEVIAPISNYVAYANPNDLAQPLVDEAI 326
Score = 67 (28.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQ---NHNLAPIEDWKDPWWPELAGRIS 276
DP G +A PY WGT IGY +K + + P + + P+ A +IS
Sbjct: 121 DP-GNQYAVPYLWGTNGIGYNINKVKAAVGEDAPPFNSMELIFNPKYAEKIS 171
>UNIPROTKB|Q9KS37 [details] [associations]
symbol:VC1424 "Spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
EMBL:AE004221 PIR:B82201 RefSeq:NP_231067.1
ProteinModelPortal:Q9KS37 SMR:Q9KS37 DNASU:2614056 GeneID:2614056
KEGG:vch:VC1424 PATRIC:20081910 OMA:DMVFPKE ProtClustDB:CLSK874367
Uniprot:Q9KS37
Length = 345
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 61/300 (20%), Positives = 118/300 (39%)
Query: 147 VPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQD 206
+P ++DF + G +K + S + + L T + + +++ +
Sbjct: 36 IPSEVLEDFTKETG--IKVIYSTYESNESMYAKLKTQGAGYDLVVPSTYF--VSKMRKEG 91
Query: 207 WFKRLSHKWKVYLRSNDAGEI----DPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIED 262
+ + H + + D + DP K ++ PY WG IG +L ++
Sbjct: 92 MLQEIDHSKLSHFKDLDPNYLNKPFDPGNK-FSIPYIWGATGIGINTDMLDKKSL---KN 147
Query: 263 WKDPWWPELAGRISMVNSPREVI-VAGGKIAVQQN-------------LALLANQVRLFD 308
W D W + AG++ +++ REV +A K+ N L L V +F+
Sbjct: 148 WGDLWDAKWAGQLMLMDDAREVFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFN 207
Query: 309 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETK 368
S + G+V + + W+ A + + + ++ P+ G W D +IPA + K
Sbjct: 208 SDFPANPYLAGEVSLGMLWNGSAYMARQEGAPIQIIWPEKGTIFWMDSISIPAGA----K 263
Query: 369 QIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSV 428
I H+ I+F L+ A E+ P+ +++ LP+E PS+
Sbjct: 264 NIEAA--------HKMIDFLLRPENAAKIALEI---GYPTPVKTAHDLLPKEFAND-PSI 311
>TIGR_CMR|VC_1424 [details] [associations]
symbol:VC_1424 "spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003852_GR GO:GO:0042597 KO:K11069
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 HSSP:P23861
EMBL:AE004221 PIR:B82201 RefSeq:NP_231067.1
ProteinModelPortal:Q9KS37 SMR:Q9KS37 DNASU:2614056 GeneID:2614056
KEGG:vch:VC1424 PATRIC:20081910 OMA:DMVFPKE ProtClustDB:CLSK874367
Uniprot:Q9KS37
Length = 345
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 61/300 (20%), Positives = 118/300 (39%)
Query: 147 VPQSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQD 206
+P ++DF + G +K + S + + L T + + +++ +
Sbjct: 36 IPSEVLEDFTKETG--IKVIYSTYESNESMYAKLKTQGAGYDLVVPSTYF--VSKMRKEG 91
Query: 207 WFKRLSHKWKVYLRSNDAGEI----DPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIED 262
+ + H + + D + DP K ++ PY WG IG +L ++
Sbjct: 92 MLQEIDHSKLSHFKDLDPNYLNKPFDPGNK-FSIPYIWGATGIGINTDMLDKKSL---KN 147
Query: 263 WKDPWWPELAGRISMVNSPREVI-VAGGKIAVQQN-------------LALLANQVRLFD 308
W D W + AG++ +++ REV +A K+ N L L V +F+
Sbjct: 148 WGDLWDAKWAGQLMLMDDAREVFHIALSKLGYSPNTTNPKEIKAAYRELKKLMPNVLVFN 207
Query: 309 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETK 368
S + G+V + + W+ A + + + ++ P+ G W D +IPA + K
Sbjct: 208 SDFPANPYLAGEVSLGMLWNGSAYMARQEGAPIQIIWPEKGTIFWMDSISIPAGA----K 263
Query: 369 QIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSV 428
I H+ I+F L+ A E+ P+ +++ LP+E PS+
Sbjct: 264 NIEAA--------HKMIDFLLRPENAAKIALEI---GYPTPVKTAHDLLPKEFAND-PSI 311
>TIGR_CMR|CPS_0103 [details] [associations]
symbol:CPS_0103 "putrescine ABC transporter, periplasmic
putrescine-binding protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0015594 "putrescine-importing ATPase
activity" evidence=ISS] [GO:0015847 "putrescine transport"
evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0042597
eggNOG:COG0687 GO:GO:0019808 HOGENOM:HOG000263815 KO:K11073
GO:GO:0015846 RefSeq:YP_266871.1 ProteinModelPortal:Q48AP2
SMR:Q48AP2 STRING:Q48AP2 GeneID:3518986 KEGG:cps:CPS_0103
PATRIC:21463621 OMA:KRLEKND ProtClustDB:CLSK906175
BioCyc:CPSY167879:GI48-206-MONOMER Uniprot:Q48AP2
Length = 369
Score = 104 (41.7 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 297 LALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMS---NVAVV---VPKSGA 350
LA + + F S+ Y+ GD+ VA G+S DV A R N ++ +PK GA
Sbjct: 213 LAEIRPHITYFHSSRYITDLANGDICVAYGFSGDVFQAKARAEEAGNGHIIEYKIPKEGA 272
Query: 351 SLWADLWAIP 360
+LW D+ AIP
Sbjct: 273 NLWFDMLAIP 282
Score = 68 (29.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQNH--NLAPIEDWK---DPWWPELAGR--ISMVNS 280
DP G A PY WGT IGY ++ + + AP + + +P + E G+ +++++S
Sbjct: 124 DP-GNQHAVPYLWGTNGIGYNVAQVKAALGDDAPTDSLELIFNPKYAEKLGKCGLAVLDS 182
Query: 281 PREVI 285
P E+I
Sbjct: 183 PDEMI 187
>UNIPROTKB|Q9KKJ4 [details] [associations]
symbol:VCA1113 "Spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003853_GR GO:GO:0042597
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 KO:K02055
HSSP:P23861 EMBL:AE004436 PIR:B82377 RefSeq:NP_233492.1
ProteinModelPortal:Q9KKJ4 DNASU:2612172 GeneID:2612172
KEGG:vch:VCA1113 PATRIC:20086744 OMA:TIHYANA ProtClustDB:CLSK789277
Uniprot:Q9KKJ4
Length = 343
Score = 125 (49.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 53/215 (24%), Positives = 89/215 (41%)
Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI-- 285
DP+ K ++ PY WG + Y S N I W D W + ++ +++ R+V
Sbjct: 116 DPQNK-FSLPYIWGITGLYYNSSTLPNG----ITKWADLWDKQYEQQVMLIDDIRDVFGM 170
Query: 286 ---VAGGKIAVQ---------QNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLP 333
+ G I + ++L L V L++S + G+ + + W+ +
Sbjct: 171 ALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQ 230
Query: 334 AVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTAR 393
M + V+P+ GA LW D + IP+ S K I PL H++I F Q
Sbjct: 231 GQVEMPELKFVMPEEGAVLWMDNFTIPSGS----KNI--------PLAHKFINFMYQPEN 278
Query: 394 ALPFKQEVIPGASPSALESTLVKLPEELLKGKPSV 428
Q + G + SA + LP EL + P++
Sbjct: 279 QAEIVQSL--GYA-SATKGGRALLPAEL-RDNPTI 309
>TIGR_CMR|VC_A1113 [details] [associations]
symbol:VC_A1113 "spermidine/putrescine ABC transporter,
periplasmic spermidine/putrescine-binding protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0015417
"polyamine-transporting ATPase activity" evidence=ISS] [GO:0015847
"putrescine transport" evidence=ISS] [GO:0015848 "spermidine
transport" evidence=ISS] InterPro:IPR001188 PIRSF:PIRSF019574
PRINTS:PR00909 GenomeReviews:AE003853_GR GO:GO:0042597
GO:GO:0019808 GO:GO:0015417 GO:GO:0015847 GO:GO:0015848 KO:K02055
HSSP:P23861 EMBL:AE004436 PIR:B82377 RefSeq:NP_233492.1
ProteinModelPortal:Q9KKJ4 DNASU:2612172 GeneID:2612172
KEGG:vch:VCA1113 PATRIC:20086744 OMA:TIHYANA ProtClustDB:CLSK789277
Uniprot:Q9KKJ4
Length = 343
Score = 125 (49.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 53/215 (24%), Positives = 89/215 (41%)
Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI-- 285
DP+ K ++ PY WG + Y S N I W D W + ++ +++ R+V
Sbjct: 116 DPQNK-FSLPYIWGITGLYYNSSTLPNG----ITKWADLWDKQYEQQVMLIDDIRDVFGM 170
Query: 286 ---VAGGKIAVQ---------QNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLP 333
+ G I + ++L L V L++S + G+ + + W+ +
Sbjct: 171 ALKLNGFSINTKNEEEIKKAYESLVALKKNVLLYNSDAPHVPYVSGEATLGMQWNGNAYQ 230
Query: 334 AVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTAR 393
M + V+P+ GA LW D + IP+ S K I PL H++I F Q
Sbjct: 231 GQVEMPELKFVMPEEGAVLWMDNFTIPSGS----KNI--------PLAHKFINFMYQPEN 278
Query: 394 ALPFKQEVIPGASPSALESTLVKLPEELLKGKPSV 428
Q + G + SA + LP EL + P++
Sbjct: 279 QAEIVQSL--GYA-SATKGGRALLPAEL-RDNPTI 309
>UNIPROTKB|P0AFK9 [details] [associations]
symbol:potD "putrescine / spermidine ABC transporter -
periplasmic binding protein" species:83333 "Escherichia coli K-12"
[GO:0019808 "polyamine binding" evidence=IEA] [GO:0015846
"polyamine transport" evidence=IEA;IMP] [GO:0015417
"polyamine-transporting ATPase activity" evidence=IMP]
InterPro:IPR001188 PIRSF:PIRSF019574 PRINTS:PR00909 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0042597 eggNOG:COG0687 KO:K11069 GO:GO:0019808 GO:GO:0015417
EMBL:M64519 TCDB:3.A.1.11.1 PIR:D40840 RefSeq:NP_415641.1
RefSeq:YP_489391.1 PDB:1POT PDB:1POY PDBsum:1POT PDBsum:1POY
ProteinModelPortal:P0AFK9 SMR:P0AFK9 IntAct:P0AFK9
SWISS-2DPAGE:P0AFK9 PaxDb:P0AFK9 PRIDE:P0AFK9
EnsemblBacteria:EBESCT00000003763 EnsemblBacteria:EBESCT00000015138
GeneID:12932803 GeneID:945682 KEGG:ecj:Y75_p1093 KEGG:eco:b1123
PATRIC:32117493 EchoBASE:EB0745 EcoGene:EG10752
HOGENOM:HOG000263814 OMA:VWNGSAY ProtClustDB:PRK09501
BioCyc:EcoCyc:POTD-MONOMER BioCyc:ECOL316407:JW1109-MONOMER
EvolutionaryTrace:P0AFK9 Genevestigator:P0AFK9 Uniprot:P0AFK9
Length = 348
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 41/151 (27%), Positives = 62/151 (41%)
Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI-V 286
DP ++ PY WG AIG + + W D W PE G + + + REV +
Sbjct: 120 DPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQM 175
Query: 287 AGGKIAVQQN-------------LALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLP 333
A K+ N L L V F+S + + G+V + + W+
Sbjct: 176 ALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFV 235
Query: 334 AVKRMSNVAVVVPKSGASLWADLWAIPAASR 364
A + + + VV PK G W D AIPA ++
Sbjct: 236 ARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 439 399 0.00097 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 10
No. of states in DFA: 627 (67 KB)
Total size of DFA: 289 KB (2147 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.79u 0.11s 29.90t Elapsed: 00:00:01
Total cpu time: 29.79u 0.11s 29.90t Elapsed: 00:00:01
Start: Sat May 11 08:26:34 2013 End: Sat May 11 08:26:35 2013