BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044097
(439 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain
K12) GN=potF PE=1 SV=3
Length = 370
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 29/165 (17%)
Query: 228 DPRGKIWAAPYRWGTMAIGYKKSKFQN--HNLAPIEDWKDPWWPELAGR-----ISMVNS 280
DP K +A PY W T IGY K + AP++ W PE + +S +++
Sbjct: 124 DPDNK-FAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDA 182
Query: 281 PREVIV--------------AGGKIAVQQNLAL-LANQVRLFDSTHYLKAFGIGDVWVAV 325
P EV A +L L L +R F S+ Y+ GD+ VA+
Sbjct: 183 PEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAI 242
Query: 326 GWSSDVLPAVKRMS------NVAVVVPKSGASLWADLWAIPAASR 364
GW+ DV A R NV+ +PK GA + D++A+PA ++
Sbjct: 243 GWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 287
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-A PE=3 SV=2
Length = 350
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 112/287 (39%), Gaps = 59/287 (20%)
Query: 138 LRVVSLQNSVPQSWVKDFMRSQG---------------KRLKFQMNLCASIDGIVNNLST 182
L V + + VP V F + G +LK N + D +V S
Sbjct: 30 LYVYNWTDYVPSDLVAQFSKETGIEVIYSTFESNEEMYAKLKLTQNTGSGYD-LVFPSSY 88
Query: 183 PFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGT 242
NK+ IK++ ++PI DQ + K L E DP K ++ PY +G
Sbjct: 89 YVNKM---IKEKMLQPI----DQSKLTNIHQIPKHLLNK----EFDPENK-YSLPYVYGL 136
Query: 243 MAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREV----IVAGGK-------- 290
I + + I W D W PE G++ M + REV ++ GK
Sbjct: 137 TGIEVNADEI---DPKTITSWADLWKPEFKGKVLMTSDAREVFHVALLLDGKSPNTTNEE 193
Query: 291 ---IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPK 347
A ++ LL N V F+S + G+V + + W+ A K ++ V PK
Sbjct: 194 DIKTAYERLEKLLPN-VATFNSDSPEVPYVQGEVAIGMIWNGSAYLAQKENQSLQFVYPK 252
Query: 348 SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARA 394
GA W D +AIP ++ V G H++I+F L+ A
Sbjct: 253 EGAIFWMDNYAIPTTAK--------NVEGA----HKFIDFLLRPENA 287
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=potD-B PE=3 SV=1
Length = 360
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 32/213 (15%)
Query: 226 EIDP--------RGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISM 277
E+DP +G ++ P G I + + ++ W D W PE A ++ +
Sbjct: 121 ELDPDWLNKPYDKGNKYSLPQLLGAPGIAFNTNTYKGEQFT---SWADLWKPEFANKVQL 177
Query: 278 VNSPREVI-VAGGKIAVQQN-------------LALLANQVRLFDSTHYLKAFGIGDVWV 323
++ REV +A KI N L L V F+S + +F G+V V
Sbjct: 178 LDDAREVFNIALLKIGQDPNTQDPAIIKQAYEELLKLRPNVLSFNSDNPANSFISGEVEV 237
Query: 324 AVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA-------ASRLETKQIGGQVRG 376
W+ V A K + + +V PK G LW D AIPA A +L +G +
Sbjct: 238 GQLWNGSVRIAKKEKAPLNMVFPKEGPVLWVDTLAIPATAKNSEGAHKLINYMLGKKTAE 297
Query: 377 PSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 409
L + ++ +ALP + P PSA
Sbjct: 298 KLTLAIGYPTSNIEAKKALPKEITEDPAIYPSA 330
>sp|P0AFL0|POTD_SHIFL Spermidine/putrescine-binding periplasmic protein OS=Shigella
flexneri GN=potD PE=3 SV=1
Length = 348
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 18/152 (11%)
Query: 227 IDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI- 285
DP ++ PY WG AIG + + W D W PE G + + + REV
Sbjct: 119 FDPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQ 174
Query: 286 VAGGKIAVQQN-------------LALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVL 332
+A K+ N L L V F+S + + G+V + + W+
Sbjct: 175 MALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAF 234
Query: 333 PAVKRMSNVAVVVPKSGASLWADLWAIPAASR 364
A + + + VV PK G W D AIPA ++
Sbjct: 235 VARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0AFK9|POTD_ECOLI Spermidine/putrescine-binding periplasmic protein OS=Escherichia
coli (strain K12) GN=potD PE=1 SV=1
Length = 348
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 62/152 (40%), Gaps = 18/152 (11%)
Query: 227 IDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI- 285
DP ++ PY WG AIG + + W D W PE G + + + REV
Sbjct: 119 FDPNND-YSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQ 174
Query: 286 VAGGKIAVQQN-------------LALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVL 332
+A K+ N L L V F+S + + G+V + + W+
Sbjct: 175 MALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAF 234
Query: 333 PAVKRMSNVAVVVPKSGASLWADLWAIPAASR 364
A + + + VV PK G W D AIPA ++
Sbjct: 235 VARQAGTPIDVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0A2C7|POTD_SALTY Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=potD PE=3 SV=1
Length = 348
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 18/152 (11%)
Query: 227 IDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI- 285
DP ++ PY WG AIG I W D W PE + + + REV
Sbjct: 119 FDPNND-YSVPYIWGATAIGVNSDAIDPKT---ITSWADLWKPEYKNSLLLTDDAREVFQ 174
Query: 286 -------VAGGKI------AVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVL 332
+G A + L L V F+S + + G+V + + W+
Sbjct: 175 MALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAF 234
Query: 333 PAVKRMSNVAVVVPKSGASLWADLWAIPAASR 364
A + + + VV PK G W D AIPA ++
Sbjct: 235 VARQAGTPLEVVWPKEGGIFWMDSLAIPANAK 266
>sp|P0A2C8|POTD_SALTI Spermidine/putrescine-binding periplasmic protein OS=Salmonella
typhi GN=potD PE=3 SV=1
Length = 348
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 18/152 (11%)
Query: 227 IDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI- 285
DP ++ PY WG AIG I W D W PE + + + REV
Sbjct: 119 FDPNND-YSVPYIWGATAIGVNSDAIDPKT---ITSWADLWKPEYKNSLLLTDDAREVFQ 174
Query: 286 -------VAGGKI------AVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVL 332
+G A + L L V F+S + + G+V + + W+
Sbjct: 175 MALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAF 234
Query: 333 PAVKRMSNVAVVVPKSGASLWADLWAIPAASR 364
A + + + VV PK G W D AIPA ++
Sbjct: 235 VARQAGTPLEVVWPKEGGIFWMDSLAIPANAK 266
>sp|O27190|PPSA_METTH Probable phosphoenolpyruvate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=ppsA PE=3 SV=1
Length = 684
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 26/127 (20%)
Query: 244 AIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNS----------------PREVIVA 287
A+ + Q+H +P +D W + G + M+ S RE++V
Sbjct: 309 ALAEMGRRIQDHYGSP----QDTEWAIMDGDVYMLQSRPITTLGEATEETEVKSREILVK 364
Query: 288 GGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPK 347
G + + L + +V++ H L IGD+ V V + D++PA+KR S ++ +
Sbjct: 365 G----LGASPGLASGRVKIIREIHELDKIQIGDILVTVMTTPDMVPAMKRAS--GIITDE 418
Query: 348 SGASLWA 354
G + A
Sbjct: 419 GGVTCHA 425
>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 24/159 (15%)
Query: 211 LSHKWKVYLRSNDAGEI------------DPRGKIWAAPYRWGTMAI---GYKKSKFQNH 255
LSH YLR + + +I D R ++ A R G + I G F +
Sbjct: 974 LSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDS 1033
Query: 256 NLAPIEDWKDPWWPELAGRISMVNSPREVIVAG--GKIAVQQNLALLANQVRLFDSTHYL 313
DW + R + REV + V++N+ A Q RL D
Sbjct: 1034 ------DWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENMLRKAEQKRLLDKMVIQ 1087
Query: 314 KAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASL 352
+ D W VGW D+ V +++V+ VV KSG +
Sbjct: 1088 EGGFNNDWWGRVGW-KDMFGDVPGITDVSGVVEKSGEGI 1125
>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=SWR1 PE=3 SV=1
Length = 1246
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 61/159 (38%), Gaps = 24/159 (15%)
Query: 211 LSHKWKVYLRSNDAGEI------------DPRGKIWAAPYRWGTMAI---GYKKSKFQNH 255
LSH YLR + + +I D R ++ A R G + I G F +
Sbjct: 974 LSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDS 1033
Query: 256 NLAPIEDWKDPWWPELAGRISMVNSPREVIVAG--GKIAVQQNLALLANQVRLFDSTHYL 313
DW + R + REV + V++N+ A Q RL D
Sbjct: 1034 ------DWNPSMDRQCMDRAHRIGQTREVHIYRFVSSHTVEENMLRKAEQKRLLDKMVIQ 1087
Query: 314 KAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASL 352
+ D W VGW D+ V +++V+ VV KSG +
Sbjct: 1088 EGGFNNDWWGRVGW-KDMFGDVPGITDVSGVVEKSGEGI 1125
>sp|Q9KU25|NSPS_VIBCH Norspermidine sensor OS=Vibrio cholerae serotype O1 (strain ATCC
39315 / El Tor Inaba N16961) GN=nspS PE=3 SV=1
Length = 359
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 26/150 (17%)
Query: 235 AAPYRWGTMAIGYKKSKFQNHNLAPIEDWKD--PWWPELAGRISMVNSPREVIVAGGKIA 292
A PY WG++ I Y+KS F P W + P GR+ M+ E ++ +
Sbjct: 127 AVPYFWGSVGIAYRKSLFDK----PPTQWSEVVDIAPAHRGRVGMLKDSVETLLPALYML 182
Query: 293 ----VQQNLALLANQVRLFDSTH-----------YLKAFGIGD-VWVAVGWSSDVLPAVK 336
+ ++ L RL D+ + Y+++ D + +AV +S D ++
Sbjct: 183 NASPITDSIDTLRQAYRLLDAANPHILTYEYVLSYVRSHPQTDNLHMAVSYSGDHY-SLN 241
Query: 337 RMSNVA---VVVPKSGASLWADLWAIPAAS 363
R N VP+ LW D A+ + S
Sbjct: 242 RFFNTQDWDFSVPEGRPYLWVDCMAVNSVS 271
>sp|Q8TBB5|KLDC4_HUMAN Kelch domain-containing protein 4 OS=Homo sapiens GN=KLHDC4 PE=1
SV=1
Length = 520
Score = 32.3 bits (72), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 269 PELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWS 328
P L +S+ E+I+ GG+ Q L N++ ++++ D W V
Sbjct: 63 PRLNASLSVHPEKDELILFGGEYFNGQK-TFLYNELYVYNTRK--------DTWTKVDIP 113
Query: 329 SDVLPAVKRMSNVAVVVPKSGASLW 353
S P +R ++ AVVVP+ G LW
Sbjct: 114 S---PPPRRCAHQAVVVPQGGGQLW 135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,705,635
Number of Sequences: 539616
Number of extensions: 6994008
Number of successful extensions: 17144
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 17116
Number of HSP's gapped (non-prelim): 22
length of query: 439
length of database: 191,569,459
effective HSP length: 121
effective length of query: 318
effective length of database: 126,275,923
effective search space: 40155743514
effective search space used: 40155743514
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)