Query 044097
Match_columns 439
No_of_seqs 163 out of 1269
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0687 PotD Spermidine/putres 100.0 2.6E-34 5.5E-39 293.6 24.0 266 137-430 33-331 (363)
2 PRK09501 potD spermidine/putre 100.0 1.2E-33 2.6E-38 286.5 25.1 261 137-426 28-313 (348)
3 PRK10682 putrescine transporte 100.0 1.1E-32 2.4E-37 281.6 24.8 265 136-424 30-332 (370)
4 TIGR03261 phnS2 putative 2-ami 100.0 7.3E-27 1.6E-31 235.5 21.2 234 137-399 23-281 (334)
5 TIGR03227 PhnS 2-aminoethylpho 99.9 2.7E-26 5.8E-31 234.8 23.5 245 137-421 37-317 (367)
6 PRK11622 hypothetical protein; 99.9 1.1E-24 2.4E-29 225.6 24.3 262 137-426 40-361 (401)
7 TIGR01254 sfuA ABC transporter 99.9 3.3E-24 7.1E-29 213.3 21.9 238 136-410 2-269 (304)
8 TIGR01276 thiB thiamine ABC tr 99.9 1.9E-24 4.1E-29 215.4 19.3 244 136-422 2-276 (309)
9 PRK11205 tbpA thiamine transpo 99.9 1E-23 2.2E-28 212.3 20.6 243 137-422 24-297 (330)
10 PRK15046 2-aminoethylphosphona 99.9 3.5E-23 7.6E-28 210.1 22.1 239 137-410 36-302 (349)
11 PF13416 SBP_bac_8: Bacterial 99.9 1.9E-22 4E-27 196.2 17.2 249 150-429 1-280 (281)
12 PF13343 SBP_bac_6: Bacterial 99.9 1.3E-22 2.8E-27 195.0 15.7 201 178-409 5-216 (242)
13 TIGR03850 bind_CPR_0540 carboh 99.9 1.1E-20 2.3E-25 196.3 22.8 258 135-409 33-364 (437)
14 COG4143 TbpA ABC-type thiamine 99.9 8.4E-21 1.8E-25 186.5 15.5 247 137-424 27-305 (336)
15 PRK09474 malE maltose ABC tran 99.8 7.2E-19 1.6E-23 180.3 22.0 237 137-400 32-322 (396)
16 TIGR03851 chitin_NgcE carbohyd 99.8 1.1E-18 2.3E-23 182.6 21.0 254 135-409 39-370 (450)
17 COG1840 AfuA ABC-type Fe3+ tra 99.8 9.3E-19 2E-23 174.5 15.3 219 151-400 1-245 (299)
18 COG2182 MalE Maltose-binding p 99.8 1E-17 2.2E-22 172.9 17.6 233 149-410 57-345 (420)
19 PRK10974 glycerol-3-phosphate 99.7 7.8E-16 1.7E-20 160.6 18.5 246 148-410 42-352 (438)
20 COG1653 UgpB ABC-type sugar tr 99.7 1E-15 2.2E-20 156.4 16.1 242 147-409 47-354 (433)
21 PF01547 SBP_bac_1: Bacterial 99.6 1.9E-15 4.1E-20 147.5 12.7 227 149-395 11-315 (315)
22 PRK10852 thiosulfate transport 99.5 2.4E-12 5.3E-17 130.6 21.6 226 148-428 40-303 (338)
23 TIGR01256 modA molybdenum ABC 99.5 3.7E-13 8.1E-18 127.1 14.3 192 149-399 9-214 (216)
24 COG4134 ABC-type uncharacteriz 99.4 5.9E-12 1.3E-16 124.5 13.7 241 156-423 59-347 (384)
25 TIGR00971 3a0106s03 sulfate/th 99.4 4.7E-11 1E-15 120.3 20.1 222 137-409 12-272 (315)
26 PRK10752 sulfate transporter s 99.4 4.3E-11 9.2E-16 121.2 19.3 211 149-409 37-283 (329)
27 PRK10677 modA molybdate transp 99.3 2.3E-10 5E-15 112.0 20.2 203 137-399 28-251 (257)
28 PF13531 SBP_bac_11: Bacterial 99.3 1.3E-10 2.8E-15 110.7 15.8 203 138-399 1-226 (230)
29 PRK04168 molybdate ABC transpo 99.2 6.9E-10 1.5E-14 112.7 20.4 91 311-423 213-332 (334)
30 COG1613 Sbp ABC-type sulfate t 99.1 5.5E-09 1.2E-13 102.2 20.4 229 149-430 53-316 (348)
31 PF02030 Lipoprotein_8: Hypoth 98.9 2.7E-08 5.8E-13 103.8 13.2 236 137-390 27-335 (493)
32 COG0725 ModA ABC-type molybdat 98.8 7.5E-07 1.6E-11 87.4 19.2 147 234-406 103-256 (258)
33 PRK03537 molybdate ABC transpo 98.6 4.8E-07 1E-11 84.5 11.8 150 235-407 16-185 (188)
34 COG4588 AcfC Accessory coloniz 97.9 0.00028 6.2E-09 66.0 13.6 139 237-399 97-247 (252)
35 TIGR03730 tungstate_WtpA tungs 97.6 0.0023 5E-08 63.4 15.8 66 311-388 186-273 (273)
36 COG4150 CysP ABC-type sulfate 97.5 0.00012 2.6E-09 70.2 5.3 207 149-400 50-288 (341)
37 PRK09861 cytoplasmic membrane 95.9 0.28 6.1E-06 48.6 14.9 84 309-407 185-270 (272)
38 PRK11063 metQ DL-methionine tr 95.5 2.2 4.7E-05 42.3 19.6 86 309-407 184-269 (271)
39 TIGR01098 3A0109s03R phosphate 92.2 11 0.00024 35.8 18.7 29 310-338 184-212 (254)
40 COG0226 PstS ABC-type phosphat 91.7 17 0.00036 36.8 18.2 102 148-277 57-170 (318)
41 PRK10859 membrane-bound lytic 83.5 55 0.0012 35.0 16.7 110 234-362 121-235 (482)
42 PRK11119 proX glycine betaine 79.9 30 0.00064 35.3 12.5 97 240-344 112-227 (331)
43 smart00062 PBPb Bacterial peri 67.3 75 0.0016 27.7 10.7 84 234-338 79-165 (219)
44 TIGR00363 lipoprotein, YaeC fa 63.6 28 0.00061 34.2 7.6 86 309-407 171-256 (258)
45 PRK10797 glutamate and asparta 53.9 2E+02 0.0044 28.5 12.1 158 234-422 126-290 (302)
46 PRK11553 alkanesulfonate trans 51.6 2.5E+02 0.0054 27.6 18.2 28 309-336 165-192 (314)
47 PRK10918 phosphate ABC transpo 50.8 59 0.0013 33.4 7.7 20 147-166 40-59 (346)
48 COG2998 TupB ABC-type tungstat 48.1 32 0.00069 33.5 4.8 73 316-399 186-260 (280)
49 COG5510 Predicted small secret 46.8 12 0.00025 26.7 1.2 24 67-90 1-24 (44)
50 TIGR02122 TRAP_TAXI TRAP trans 45.9 47 0.001 32.6 6.1 18 149-166 48-66 (320)
51 PF12727 PBP_like: PBP superfa 43.1 1E+02 0.0022 28.8 7.4 122 233-388 61-192 (193)
52 TIGR03871 ABC_peri_MoxJ_2 quin 42.7 2.7E+02 0.0059 25.6 12.3 124 234-389 73-214 (232)
53 COG2113 ProX ABC-type proline/ 41.5 3.9E+02 0.0084 27.0 13.3 22 313-334 188-209 (302)
54 PF03401 TctC: Tripartite tric 41.4 1.6E+02 0.0034 29.0 8.9 151 234-409 71-248 (274)
55 COG1732 OpuBC Periplasmic glyc 39.4 48 0.001 33.4 4.8 92 232-331 126-222 (300)
56 PRK09495 glnH glutamine ABC tr 35.0 3.5E+02 0.0076 25.3 10.0 79 234-332 103-184 (247)
57 PRK03577 acid shock protein pr 32.8 34 0.00074 28.5 2.1 28 68-96 1-28 (102)
58 PRK10081 entericidin B membran 32.5 26 0.00057 25.5 1.3 26 68-93 2-27 (48)
59 COG1464 NlpA ABC-type metal io 32.1 2.5E+02 0.0055 27.9 8.4 115 67-197 2-154 (268)
60 PF03202 Lipoprotein_10: Putat 31.7 43 0.00092 29.8 2.8 26 354-391 6-31 (135)
61 PRK09973 putative outer membra 27.9 37 0.0008 27.8 1.6 23 68-91 1-23 (85)
62 PF00123 Hormone_2: Peptide ho 25.1 51 0.0011 21.3 1.5 11 380-390 18-28 (28)
63 COG1910 Periplasmic molybdate- 23.1 2.1E+02 0.0045 27.7 5.9 123 240-397 74-206 (223)
64 PRK01326 prsA foldase protein 22.4 49 0.0011 33.3 1.6 24 68-91 1-24 (310)
65 cd00134 PBPb Bacterial peripla 21.9 3.3E+02 0.0071 23.6 6.8 128 234-397 78-214 (218)
66 COG4623 Predicted soluble lyti 20.8 3.1E+02 0.0068 28.9 6.9 183 150-402 49-246 (473)
67 PRK06760 hypothetical protein; 20.5 1.8E+02 0.0039 28.0 4.9 47 149-201 43-93 (223)
No 1
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-34 Score=293.65 Aligned_cols=266 Identities=26% Similarity=0.452 Sum_probs=213.7
Q ss_pred eEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeecc-----------cccccceEecCchhHHHHHHCCCcccccccccc
Q 044097 137 PLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCAS-----------IDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 137 ~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s-----------~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~ 205 (439)
+|+|++|++++.+++++.|++++||+|.+. .+++ ... ||.+.++..++.+++++|+|+||+..++
T Consensus 33 ~l~v~~w~gy~~~~~~~~F~k~tGi~V~~~--~~~sne~~~ak~~~g~~~-~Dvv~~s~~~~~~~~~~gll~~lD~skl- 108 (363)
T COG0687 33 TLNVYNWGGYIDPALLKPFEKETGIKVVYD--TFDSNEEMLAKLKAGGGG-YDVVVPSGYFVARLIKEGLLQPLDKSKL- 108 (363)
T ss_pred EEEEEcccccCCHHHHHHHHHHHCCEEEEE--ecCCcHHHHHHHHcCCCC-ceEEEeCHHHHHHHHHcCCcccCChhhC-
Confidence 699999999999999999999999999997 3333 223 7777788999999999999999999863
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCcc----ccCc-eeeccC
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPE----LAGR-ISMVNS 280 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~----lkgk-I~~~~~ 280 (439)
+++.++++.+ +.. ...| .|..|+|||.|++.+|+||++.++. -.+|+||+|||+++ ++++ +.+.++
T Consensus 109 ~n~~~l~~~~---~~~---~~~d-~g~~y~vPy~~g~t~i~Yn~~~~~~--~~~~~sW~~l~d~~~~~~~k~~~~~~~d~ 179 (363)
T COG0687 109 PNWKNLDPEF---LNP---PKFD-PGNKYSVPYFWGTTGIAYNTDKVKD--APPPTSWADLFDPEKFPGLKGKGVALLDD 179 (363)
T ss_pred cCccccCHHH---hcc---ccCC-CCCEeeeeEEeeeeEEEEeccccCC--CCCCccHHHHhCchhhHHHhCCceEEecC
Confidence 3334455544 321 1134 4778999999999999999999992 14789999999986 7887 788888
Q ss_pred hhHHHH----hCCH----------HHHHHHHHHHhh-hhcccCchHHHHHhhcCCeEEEEEccccHHHHH--HcCCCeeE
Q 044097 281 PREVIV----AGGK----------IAVQQNLALLAN-QVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV--KRMSNVAV 343 (439)
Q Consensus 281 ~~~~~~----~~G~----------d~~~e~L~~l~~-~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~--~~~~~v~~ 343 (439)
+++++. .+|. .++.+.|.++++ ++..++++++.+.|++|+++|+++|++++..+. +.+.++.|
T Consensus 180 ~~~~~~~al~~lg~~~n~~~~~~~~~a~~~L~~~kp~~~~~~~~~~~~~~l~~Gev~~a~~w~g~~~~~~~~~~~~~i~~ 259 (363)
T COG0687 180 DREVFGAALALLGKSPNTTDPEDLKKAFDLLDKLKPVNVYWFDGSQYVQLLANGEVVLAMGWSGDAAAAKAAKNGAPIEF 259 (363)
T ss_pred hHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhCcccEEEecchHHHHHHhcCCEEEEEEeChHHHHHHHhhcCCceEE
Confidence 887663 3342 357788889999 666667788999999999999999999998874 56678999
Q ss_pred EccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhc
Q 044097 344 VVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLK 423 (439)
Q Consensus 344 ~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~ 423 (439)
++|++|+.+|.++|+|+++++|++ +|++||+|+++||+|..+++. .+|++|+. .+...+++++..
T Consensus 260 ~~p~eG~~~w~D~~~ipk~a~n~~------------~A~~fInf~~~pe~~a~~~~~-~~y~~~n~--~a~~~~~~~~~~ 324 (363)
T COG0687 260 VIPKEGSILWFDNLAIPKGAKNVD------------AAYKFINFLLDPEVAAKLAEF-VGYAPPNK--AARKLLPKEIKD 324 (363)
T ss_pred EcCCCCceeeeEeeeeeCCCCCHH------------HHHHHHHHhhCHHHHHHHHHh-ccCCCCCH--HHHHhCcHhhhc
Confidence 999999999999999999999999 999999999999999999975 78888876 323335555544
Q ss_pred CCCCCCc
Q 044097 424 GKPSVDT 430 (439)
Q Consensus 424 ~~~~~~~ 430 (439)
....+++
T Consensus 325 ~~~~~p~ 331 (363)
T COG0687 325 DPAIYPT 331 (363)
T ss_pred CcccCCC
Confidence 4444433
No 2
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=100.00 E-value=1.2e-33 Score=286.54 Aligned_cols=261 Identities=24% Similarity=0.395 Sum_probs=207.1
Q ss_pred eEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeeccc-----------ccccceEecCchhHHHHHHCCCcccccccccc
Q 044097 137 PLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASI-----------DGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 137 ~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s~-----------~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~ 205 (439)
+|+|++|++++.++++++|++++||+|+++. +++. ...+|.+..+..++.+++++|+|+||+... .
T Consensus 28 ~l~v~~w~~~~~~~i~~~Fe~~~gi~V~~~~--~~s~~~~~~kl~a~~~~~~Dvv~~~~~~~~~~~~~gll~~ld~~~-~ 104 (348)
T PRK09501 28 TLYFYNWTEYVPPGLLEQFTKETGIKVIYST--YESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSK-L 104 (348)
T ss_pred EEEEEeCcccCCHHHHHHHHHHHCCeEEEEe--cCCHHHHHHHHhcCCCCCceEEEeCHHHHHHHHHCCCcccCChhh-C
Confidence 6889999999999999999999999999862 2221 122444445667789999999999998653 1
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHH
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI 285 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~ 285 (439)
+++.++.+. +.. ..+|+ |+.|++||.+++.+|+||++++++ ++|+||+||++++++|+|+|.++..+.+
T Consensus 105 ~~~~~i~~~---~~~----~~~~~-~~~y~vP~~~~~~~i~YN~d~v~~---~~~~sw~dL~~p~~~g~i~~~~~~~~~~ 173 (348)
T PRK09501 105 TNFSNLDPD---MLN----KPFDP-NNDYSIPYIWGATAIGVNSDAIDP---KSVTSWADLWKPEYKGSLLLTDDAREVF 173 (348)
T ss_pred cChhhCCHH---Hhc----CCCCC-CCceEeeeeccceEEEEcHHHcCC---CCCCCHHHHhCHHHcCCeEEeCCHHHHH
Confidence 223334333 332 12454 556999999999999999999975 3789999999999999999988776644
Q ss_pred ----HhCCH----------HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCce
Q 044097 286 ----VAGGK----------IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS 351 (439)
Q Consensus 286 ----~~~G~----------d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~ 351 (439)
...|. +++.+.|.++++++..|+.+...+.|.+|++.+++.|+++.....+.+.++++++|++|..
T Consensus 174 ~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~i~~~w~~~~~~~~~~g~~i~~~~P~eG~~ 253 (348)
T PRK09501 174 QMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGI 253 (348)
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHhhhhhEEEcCcHHHHHHHcCCEEEEEeehHHHHHHHhcCCCceEEecCCCcc
Confidence 23342 4567888889888877766666789999999999999988876666678899999999999
Q ss_pred eeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCC
Q 044097 352 LWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKP 426 (439)
Q Consensus 352 ~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~ 426 (439)
.|.++++|+++++|++ +|++||+|++|+|.|..+++. .+|.+|+. .+...||+|+++.-.
T Consensus 254 ~~~~~~~i~k~a~n~e------------~A~~Fi~~llspe~q~~~~~~-~~~~~~n~--~a~~~l~~~~~~~~~ 313 (348)
T PRK09501 254 FWMDSLAIPANAKNKE------------GALKLINFLLRPDVAKQVAET-IGYPTPNL--AARKLLSPEVANDKS 313 (348)
T ss_pred eEEEeeeEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHH-hCCCChhH--HHHHhCCHHHhcCCC
Confidence 9999999999999999 999999999999999999875 67766665 556779999876544
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=100.00 E-value=1.1e-32 Score=281.59 Aligned_cols=265 Identities=23% Similarity=0.402 Sum_probs=202.4
Q ss_pred eeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeecc----------cccccceEecCchhHHHHHHCCCcccccccccc
Q 044097 136 VPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCAS----------IDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 136 ~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s----------~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~ 205 (439)
.+|+|++|+++..++++++|++++||+|+++. +++ +...+|.+..+..++..++++|+|+||+... .
T Consensus 30 ~~l~v~~w~~~~~~~~i~~Fe~~~gi~V~~~~--~~~~~~~~~kl~a~~~~~Dvv~~~~~~~~~~~~~gll~~ld~~~-~ 106 (370)
T PRK10682 30 KTLHIYNWSDYIAPDTVANFEKETGIKVVYDV--FDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSK-L 106 (370)
T ss_pred CeEEEEeCCCcCCHHHHHHHHHHHCCEEEEEe--cCCHHHHHHHHHcCCCCCcEEEECHHHHHHHHHCCCcccCChhh-C
Confidence 36899999999888999999999999999862 221 1223555556778889999999999998754 2
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccC-CCC-CCCCcccccCccccCc-----eeec
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNH-NLA-PIEDWKDPWWPELAGR-----ISMV 278 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~-Gl~-~P~TW~DL~dp~lkgk-----I~~~ 278 (439)
+++.++.+.+ .+.. ..+|+ |+.||+||.+++.+|+||++++++. |++ +|+||+||++|+++++ +++.
T Consensus 107 ~~~~~~~~~~---~~~~--~~~~~-g~~y~vP~~~~~~~l~YN~~~~~~~~G~~~pp~sW~dl~~p~~~~~l~~~g~~~~ 180 (370)
T PRK10682 107 PNWKNLDPEL---LKLV--AKHDP-DNKYAMPYMWATTGIGYNVDKVKAVLGEDAPVDSWDLVLKPENLEKLKSCGVSFL 180 (370)
T ss_pred cChhhCCHHH---Hhcc--ccCCC-CCeEeeeeEecceEEEEehHHhcccccCCCCCCCHHHHhCchhhhhhcCCeEEEe
Confidence 2334444433 2210 11343 6679999999999999999999875 764 6899999999865443 6777
Q ss_pred cChhHHHH----hCCH-----------HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHH------Hc
Q 044097 279 NSPREVIV----AGGK-----------IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAV------KR 337 (439)
Q Consensus 279 ~~~~~~~~----~~G~-----------d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~------~~ 337 (439)
+++..++. ..|. +++.+.|.+++++++.|++++..+.|.+|+++|+++|++++..+. +.
T Consensus 181 ~~~~~~~~~~l~~~G~~~~~~~~~~~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~~~~~w~~~~~~~~~~~~~~~~ 260 (370)
T PRK10682 181 DAPEEIFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKN 260 (370)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhchhhEEEcCcHHHHHHhcCCEEEEEeecHHHHHHHHHHHhccc
Confidence 66655442 3342 256788888888877676656678999999999999999887653 23
Q ss_pred CCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCC
Q 044097 338 MSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKL 417 (439)
Q Consensus 338 ~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~l 417 (439)
+.++.+++|++|...|.++++|+++++|++ +|++||+|++++|+|..+++. .+|++|+. .+...+
T Consensus 261 ~~~i~~v~P~eG~~~~~d~~~I~k~a~~~e------------~A~~Fi~f~lspe~qa~~a~~-~~y~p~~~--~a~~~~ 325 (370)
T PRK10682 261 GVNVSYSIPKEGALAFFDVFAMPADAKNKD------------EAYQFLNYLLRPDVIAHISDH-VFYANANK--AATPLV 325 (370)
T ss_pred CCceEEEECCCcchhheeeeEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHH-hCCCCccH--HHHHhc
Confidence 567889999999999999999999999999 999999999999999999975 68877665 444457
Q ss_pred CHHHhcC
Q 044097 418 PEELLKG 424 (439)
Q Consensus 418 p~el~~~ 424 (439)
++++.+.
T Consensus 326 ~~~~~~~ 332 (370)
T PRK10682 326 SAEVRDN 332 (370)
T ss_pred CHHHhcC
Confidence 7777644
No 4
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.95 E-value=7.3e-27 Score=235.47 Aligned_cols=234 Identities=15% Similarity=0.201 Sum_probs=180.0
Q ss_pred eEEEEeCCC-CccHHHHHHHHhhc-CCeEEEEEeeeccc----------ccccceEec--CchhHHHHHHCCCccccccc
Q 044097 137 PLRVVSLQN-SVPQSWVKDFMRSQ-GKRLKFQMNLCASI----------DGIVNNLST--PFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 137 ~L~v~~w~~-~~~~~li~~Fek~~-GI~V~~~~~~~~s~----------~~~~~dv~~--~~~~~~~~i~~Gll~pl~~~ 202 (439)
+|+||++.. ...+.+++.|++++ ||+|+++. .++. .....||+. ....+..+.++|+|+|++..
T Consensus 23 ~l~vy~~~~~~~~~~l~~~Fe~~~pgi~V~~~~--~~s~~~~~kl~ae~~~~~~Dvv~~~~~~~~~~~~~~gll~~~~~~ 100 (334)
T TIGR03261 23 ELTVYTAIEDELIAKYKDAFEKVNPDIKINWVR--DSTGIITAKLLAEKNNPQADVVWGLAASSLALLDKEGMLKPYKPK 100 (334)
T ss_pred eEEEEEeccHHHHHHHHHHHHHHCCCceEEEEE--CChHHHHHHHHHHhhCCCCCEEEecCchHHHhhhhccccccCCCc
Confidence 577887643 34578999999998 99999962 1111 111234442 34566788999999999864
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChh
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPR 282 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~ 282 (439)
.+.++.+.++ |++|.-|++++.....+|+||++++++.|+++|+||+||++++++|+|+|.+...
T Consensus 101 ----~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~yN~~~~~~~g~~~P~sw~dL~~p~~~g~i~~~dp~~ 165 (334)
T TIGR03261 101 ----GLDALNPKFR-----------DAKNPPHWVGMDAWMAAICFNTVEAKKKGLPKPTSWEDLTKPEYKGHIVMPNPAS 165 (334)
T ss_pred ----ChhhcCHhhh-----------CCCCCCceEeeeeeEEEEEEehHHHHhcCCCCCCChHHhcCHHhcCCEecCCCcc
Confidence 2344444432 3333224566667788999999999998888999999999999999999976322
Q ss_pred H----HH-----HhCCHHHHHHHHHHHhhhhcccCc--hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCce
Q 044097 283 E----VI-----VAGGKIAVQQNLALLANQVRLFDS--THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS 351 (439)
Q Consensus 283 ~----~~-----~~~G~d~~~e~L~~l~~~v~~~~~--~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~ 351 (439)
. .+ ...|.+.++++|.++++++..++. .+..+.+.+|++.|++.|++++.....++.++.+++|++|..
T Consensus 166 s~~~~~~~~~~~~~~G~~~~~~~l~~l~~n~~~~~~s~~~~~~~v~~Ge~~i~~~~~~~~~~~~~~g~~v~~~~P~eG~~ 245 (334)
T TIGR03261 166 SGTGFLDVSAWLQMMGEDKGWDYMDKLHKNIAVYTHSGSKPCKLAGMGEFPIGISMAYRALKEKKKGAPIDVVFPKEGLG 245 (334)
T ss_pred chHHHHHHHHHHHHhChHHHHHHHHHHHhccCccCCCChHHHHHHhCCCceEEEEecHHHHHHHhCCCCeEEEecCCCCe
Confidence 1 11 246888889999999988766643 356688999999999999988877777778999999999988
Q ss_pred eeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHh
Q 044097 352 LWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQ 399 (439)
Q Consensus 352 ~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~ 399 (439)
.+.++++|+++++|++ +|++||+|++|+|.|..+++
T Consensus 246 ~~~~~~ai~k~a~~~e------------~A~~fidfllS~e~Q~~~~~ 281 (334)
T TIGR03261 246 WDIEATAIIKGSKNND------------AAKKLVDWSISDEAMELYAK 281 (334)
T ss_pred eeeeeeEEEcCCCCHH------------HHHHHHHHHcCHHHHHHHHh
Confidence 8889999999999999 99999999999999999975
No 5
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.95 E-value=2.7e-26 Score=234.78 Aligned_cols=245 Identities=15% Similarity=0.149 Sum_probs=176.8
Q ss_pred eEEEEeCCCCcc------HHHHHHHHhhcCCeEEEEEeeecc-----------cccccceEecCchhHHHHHHCCCcccc
Q 044097 137 PLRVVSLQNSVP------QSWVKDFMRSQGKRLKFQMNLCAS-----------IDGIVNNLSTPFNKLSFAIKKRFIEPI 199 (439)
Q Consensus 137 ~L~v~~w~~~~~------~~li~~Fek~~GI~V~~~~~~~~s-----------~~~~~~dv~~~~~~~~~~i~~Gll~pl 199 (439)
+|+||+|+++.. +.++++|++++||+|+++. ..+ ....+|.+..+..++..+.++|+|+||
T Consensus 37 ~L~Vy~~~g~~~~~~~~~~~i~~~Fe~~~Gi~V~~~~--~~s~~~~~rl~~e~~~~~~DVv~~~~~~~~~~~~~Gll~~~ 114 (367)
T TIGR03227 37 VVLVYSADGLEDGDNSLYQDQFDAFEKAEGIKVNIVE--AGGGEVVERAAKEKGNPKADVIVTAPPFIQQAAAEGLLANF 114 (367)
T ss_pred eEEEEecCcccccchHHHHHHHHHHHHHHCCEEEEEe--CChHHHHHHHHhhccCCCCCEEEeCcHHHHHHHHCCCccCC
Confidence 589999987643 6799999999999999972 111 112244444556778899999999999
Q ss_pred cccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeecc
Q 044097 200 AEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVN 279 (439)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~ 279 (439)
+... .+++.+.+ .+++|. | .|+.++..+|+||++++++ +|+||+||++++++|+|++.+
T Consensus 115 ~~~~----~~~~~~~~-----------~~~~g~-~-~p~~~~~~~i~YN~d~~~~----~P~sw~DL~~p~~~Gki~~~~ 173 (367)
T TIGR03227 115 NSDA----AKAIPAIA-----------KAADGL-W-APFVKNYFSFAINPKLLKS----APASFADLLDADFKGKLAYSN 173 (367)
T ss_pred CCcc----cccCchhh-----------cCCCCe-E-EEEeeceeEEEEchhhcCC----CCCCHHHHhChhccCCEeecC
Confidence 8642 34444432 234463 5 5999999999999999975 799999999999999999875
Q ss_pred Chh-----HHH----HhCC-HHHHHHHHHHHhhhhcccCc--hHHHHHhhcCCeEEEEEcccc-HHHHHHcCCCeeEEcc
Q 044097 280 SPR-----EVI----VAGG-KIAVQQNLALLANQVRLFDS--THYLKAFGIGDVWVAVGWSSD-VLPAVKRMSNVAVVVP 346 (439)
Q Consensus 280 ~~~-----~~~----~~~G-~d~~~e~L~~l~~~v~~~~~--~~~~~~f~~Ge~~~~i~ws~~-~~~~~~~~~~v~~~vP 346 (439)
... .++ ...| .+.++++|.+|++++..+.. ....+.|.+|++.++.++... +....+.+.++++++|
T Consensus 174 p~~s~~~~~~l~~~~~~~G~~d~a~~~l~~l~~n~~~~~~~~~~~~~~~~~Gev~i~~g~~~~~~~~~~~~g~~i~~~~P 253 (367)
T TIGR03227 174 PAQAADGMAVIILAFALFGSEDAAFAYLAKLEANNKFHSAGTGKLNALLNKGEIAVANGDLQMDLADAEHGGLNIKIFFP 253 (367)
T ss_pred CCcCccHHHHHHHHHHHcCCchHHHHHHHHHHhcCCccCCCchhHHHHHhcCceEEEccHHHHHHHHHHhcCCCeEEEee
Confidence 432 111 1245 57888999999988765543 244578999999987543221 1222334568999999
Q ss_pred CCC------ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHH
Q 044097 347 KSG------ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEE 420 (439)
Q Consensus 347 ~eG------~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~e 420 (439)
++| ...+.++++|+++++|++ +|++||+|++|+|+|..+++. .+..|...+ +.++++
T Consensus 254 ~~g~g~~~~~~~~~~~~~I~k~a~n~e------------~A~~Fidfllspe~Q~~~a~~--~~~~P~~~~---~~~~~~ 316 (367)
T TIGR03227 254 AADAGEPPSAFAIPYAIGLVKGAPNQD------------AGKKLIDFLLSADAQAKVPDL--SFGIPGRSD---VPLSDE 316 (367)
T ss_pred cCCCCCCCcccccceeEEEecCCCCHH------------HHHHHHHHHcCHHHHHHHHhc--ccCCCCCCC---CCCChh
Confidence 864 334567899999999999 999999999999999999864 244676543 335555
Q ss_pred H
Q 044097 421 L 421 (439)
Q Consensus 421 l 421 (439)
+
T Consensus 317 ~ 317 (367)
T TIGR03227 317 H 317 (367)
T ss_pred h
Confidence 4
No 6
>PRK11622 hypothetical protein; Provisional
Probab=99.93 E-value=1.1e-24 Score=225.55 Aligned_cols=262 Identities=14% Similarity=0.096 Sum_probs=176.9
Q ss_pred eEEEEeCCCC-----ccHHHHHHHHhhcCCeEEEEEe---------ee---cccc---cccceEecCchhHHHHHHCCCc
Q 044097 137 PLRVVSLQNS-----VPQSWVKDFMRSQGKRLKFQMN---------LC---ASID---GIVNNLSTPFNKLSFAIKKRFI 196 (439)
Q Consensus 137 ~L~v~~w~~~-----~~~~li~~Fek~~GI~V~~~~~---------~~---~s~~---~~~~dv~~~~~~~~~~i~~Gll 196 (439)
+|+++.|++. +.+.+++.|++++||+|+++.. .. .++. ...|.+..+...+..+.++|+|
T Consensus 40 tv~~~~wgg~~~~~~~~~~~~~~f~~~~gI~V~~~~~~~~~~~~~kl~ae~~aG~~~~~~~Dvv~~~~~~~~~~~~~gll 119 (401)
T PRK11622 40 TVYFYAWGGSPAINRYLDWVAKELKERYGITLKHVKLADIAEAVNRLLAEKQAGRDTGGSVDLVWINGENFRTLKEAGLL 119 (401)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHHHHCcEEEEEecCCHHHHHHHHHHHHhcCCCCCCCCeEEEECchhHHHHHHCCCc
Confidence 6899999864 2346788999999999998721 00 0110 2233334556667889999999
Q ss_pred cc-ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC--ccccC
Q 044097 197 EP-IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--PELAG 273 (439)
Q Consensus 197 ~p-l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lkg 273 (439)
++ +. .. .+++..++... ... ..+...++.|++||.+++.+|+||+++|++ +|+||+||++ ++++|
T Consensus 120 ~~~~~-~~-lp~~~~~~~~~-~~~-----~~~~~~~~~y~~P~~~~~~~l~YN~d~~~~----~P~Sw~dL~~~~~~~~G 187 (401)
T PRK11622 120 YGPFA-ET-LPNWRYVDTSL-PVR-----EDFGVPTEGLEAPWGGAQLVFIYDSARTPQ----PPQSPAELLEWAKANPG 187 (401)
T ss_pred cCchh-hh-CcCchhcccch-hhh-----hhccccCCceEeeccCCeEEEEEchHhcCC----CCCCHHHHHHHHHHCCC
Confidence 75 33 22 12222222100 000 011111234999999999999999999975 7999999998 68999
Q ss_pred ceeeccCh---hHHHH------h-CCH----------------HHHHHHHHHHhhhh----cccCc--hHHHHHhhcCCe
Q 044097 274 RISMVNSP---REVIV------A-GGK----------------IAVQQNLALLANQV----RLFDS--THYLKAFGIGDV 321 (439)
Q Consensus 274 kI~~~~~~---~~~~~------~-~G~----------------d~~~e~L~~l~~~v----~~~~~--~~~~~~f~~Ge~ 321 (439)
++++.+.+ ...|. . +|. +.++++|.+|++++ ..|.. .+..++|.+|++
T Consensus 188 k~~~~~p~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~g~~~~~~~~~~~~~~~~GEv 267 (401)
T PRK11622 188 RFTYPRPPDFTGTAFLKQLLYELTGDPAALKQPVDKATFARVTAPLWDYLDELHPYLWREGKTFPASPAELDQLLADGEL 267 (401)
T ss_pred cEecCCCCCCchhHHHHHHHHHhcCChHhhcCCCCHHHHHHhhhHHHHHHHHhCHHHHhccccCCCChHHHHHHHHCCCe
Confidence 99986432 11111 1 111 34567888888764 23432 356789999999
Q ss_pred EEEEEcccc-HHHHHHcC---CCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHH
Q 044097 322 WVAVGWSSD-VLPAVKRM---SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPF 397 (439)
Q Consensus 322 ~~~i~ws~~-~~~~~~~~---~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~ 397 (439)
.|++.|+.. +....+++ .++++++|++|...+.++++|+++++|++ +|++||+|++|+|.|..+
T Consensus 268 ~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~G~~~~~~~~~Ipk~a~n~~------------~A~~finfllS~e~Q~~~ 335 (401)
T PRK11622 268 DLAMTFNPNHAQSKIANGELPASTRSFVFDDGTIGNTHFVAIPFNANAKA------------GAKVVANFLLSPEAQLRK 335 (401)
T ss_pred EEEEecChHHHHHHHhcCCCCCceeEEcCCCCeeccceeEEeeCCCCCHH------------HHHHHHHHHcCHHHHHHh
Confidence 999998864 43334444 25777888899999999999999999999 999999999999999999
Q ss_pred Hhh-cCCCCCCCcccccccCCCHHHhcCCC
Q 044097 398 KQE-VIPGASPSALESTLVKLPEELLKGKP 426 (439)
Q Consensus 398 a~~-~~g~~~P~~~~~~~~~lp~el~~~~~ 426 (439)
++. ..|+ .|... ...||+|+++...
T Consensus 336 ~~~~~~g~-~P~~~---~~~l~~e~~~~~~ 361 (401)
T PRK11622 336 ADPAVWGD-PSVLD---PQKLPEEQRAAFA 361 (401)
T ss_pred cchhhcCC-CCcCC---hhhCCHHHHHHHh
Confidence 863 2344 44432 2468988876433
No 7
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=99.93 E-value=3.3e-24 Score=213.32 Aligned_cols=238 Identities=16% Similarity=0.120 Sum_probs=173.4
Q ss_pred eeEEEEeCCCCc-----cHHHHHHHHhhcCCeEEEEEe---------eeccc-ccccceEec--CchhHHHHHHCCCccc
Q 044097 136 VPLRVVSLQNSV-----PQSWVKDFMRSQGKRLKFQMN---------LCASI-DGIVNNLST--PFNKLSFAIKKRFIEP 198 (439)
Q Consensus 136 ~~L~v~~w~~~~-----~~~li~~Fek~~GI~V~~~~~---------~~~s~-~~~~~dv~~--~~~~~~~~i~~Gll~p 198 (439)
.+|+||.|.++. .+.++++|++++||+|+++.. ....+ ... .||+. +..++..+.++|+|+|
T Consensus 2 ~~l~v~~~~~~~~~~~~~~~i~~~Fe~~~gi~V~~~~~~~~~~~~~~l~~~~~~~~-~Dv~~~~~~~~~~~~~~~gll~~ 80 (304)
T TIGR01254 2 PVVTVYTYDSFAADWGLGPVVEKAFEADCNCKVKFVALEDAGELLNRLRLEGKNPK-ADVVLGLDNNLLEAASKTGLLAP 80 (304)
T ss_pred CEEEEEEcccccCcccchHHHHHHHhhhcCcEEEEEECCCHHHHHHHHHhcCCCCC-CCEEEEeCHHHHHHHHHcCCccc
Confidence 378999998853 357889999999999998621 00111 122 35543 5568899999999999
Q ss_pred ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeec
Q 044097 199 IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMV 278 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~ 278 (439)
+++. ..++...+ ...++ |++|+.++..+|+||++++++ +|+||+||++++++|+|+|.
T Consensus 81 ~~~~-----~~~~~~~~-----------~~~~~--~~~p~~~~~~~i~yn~~~~~~----~P~sw~dL~~~~~~g~i~~~ 138 (304)
T TIGR01254 81 SGVA-----LDKVNVPG-----------GWNNA--TFLPFDYGYVAFVYDKNKLQN----PPQSLKELVEPEQDLLVIYQ 138 (304)
T ss_pred CCcc-----cccccccc-----------ccCCC--eEEEEeeeeEEEEEchHHhcC----CCCCHHHHhCHHhcCcEEec
Confidence 9743 12221110 12123 779999999999999999975 69999999999999999987
Q ss_pred cChhHH-----H----HhCCHHHHHHHHHHHhhhh-cccC-chHHHHHhhcCCeEEEEEccccH-HH-HHHcCCCeeEEc
Q 044097 279 NSPREV-----I----VAGGKIAVQQNLALLANQV-RLFD-STHYLKAFGIGDVWVAVGWSSDV-LP-AVKRMSNVAVVV 345 (439)
Q Consensus 279 ~~~~~~-----~----~~~G~d~~~e~L~~l~~~v-~~~~-~~~~~~~f~~Ge~~~~i~ws~~~-~~-~~~~~~~v~~~v 345 (439)
+..... + ...|.+.+.+++++|..+. ..+. ..+....|.+|++.|++.|+++. .. ..+++.++.++.
T Consensus 139 ~p~~~~~~~~~~~~~~~~~g~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (304)
T TIGR01254 139 DPRTSSPGLGLLLWMQSVYGEDDAPQAWKQLRKKTVTVTKGWSEAYGTFLGGEYDLVLSYATSPAYHVLFEKKDNYAALN 218 (304)
T ss_pred CCCCChhHHHHHHHHHHhcChHHHHHHHHHHHhCCeecCCCCHHHHHHHhcCCccEEEEeccchhhhhhhccCCceeEEe
Confidence 643221 1 1246666677888887653 2222 24456789999999999998763 32 333456788888
Q ss_pred cCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcc
Q 044097 346 PKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 346 P~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~ 410 (439)
|++|...+.++++|+++++|++ +|++||+||+|+|.|..+++.. +..|...
T Consensus 219 ~~~g~~~~~~~~ai~k~a~n~e------------~A~~fi~fllspe~q~~~a~~~--~~~P~~~ 269 (304)
T TIGR01254 219 FSEGHYLQVEGAARLKGAKQPE------------LADKFVQFLLSPAVQNAIPTGN--WMYPVVN 269 (304)
T ss_pred cCCCCEEEEEEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhcC--eeccCCC
Confidence 8888888999999999999999 9999999999999999998652 3467654
No 8
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=99.92 E-value=1.9e-24 Score=215.36 Aligned_cols=244 Identities=18% Similarity=0.156 Sum_probs=172.2
Q ss_pred eeEEEEeCCCCcc-----HHHHHHHHhhcCCeEEEEEeeecccc-----------cccceEec--CchhHHHHHHCCCcc
Q 044097 136 VPLRVVSLQNSVP-----QSWVKDFMRSQGKRLKFQMNLCASID-----------GIVNNLST--PFNKLSFAIKKRFIE 197 (439)
Q Consensus 136 ~~L~v~~w~~~~~-----~~li~~Fek~~GI~V~~~~~~~~s~~-----------~~~~dv~~--~~~~~~~~i~~Gll~ 197 (439)
.+|+||+|+++.. +.++++|++++||+|+++ .+++.+ .-..||+. +...+..+.++|+|+
T Consensus 2 ~~l~vy~~~~~~~~~~~~~~~~~~Fe~~~gi~V~~~--~~~s~~~l~~kl~~e~~~~~~DVv~~~~~~~~~~~~~~gll~ 79 (309)
T TIGR01276 2 PVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLV--ALEDGVSLLNRLRLEGKNSKADVVLGLDNNLLDAASKTGLFA 79 (309)
T ss_pred CeEEEEEccccccCCCCchHHHHHHHHHHCCEEEEE--ecCcHHHHHHHHHHcCCCCCCCEEEecCcHHHHHHHHCCCcc
Confidence 4789999988863 468999999999999997 222211 11235543 345678999999999
Q ss_pred cccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceee
Q 044097 198 PIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISM 277 (439)
Q Consensus 198 pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~ 277 (439)
|++... +..++...+ .++ |++|+.++..+|+||++.+++ +|+||+||++++++|+|.|
T Consensus 80 p~~~~~---~~~~~~~~~-------------~~~--~~~p~~~~~~~i~yn~~~~~~----~P~sw~DL~~~~~~g~i~~ 137 (309)
T TIGR01276 80 KSGVAA---DAVNVPGGW-------------NND--TFVPFDYGYFAFVYDKNKLKN----PPQSLKELVESDQNWRVIY 137 (309)
T ss_pred cCCCCh---hhccCCccc-------------cCC--eEEEEeeEEEEEEECccccCC----CCCCHHHHhccccCCeEEe
Confidence 986531 112222211 123 789999999999999999874 7999999999999999998
Q ss_pred ccChhHH-----HH----hCCHHHHHHHHHHHhhhhccc-C-chHHHHHhhcCCeEEEEEccccHHHH--HHcCCCeeEE
Q 044097 278 VNSPREV-----IV----AGGKIAVQQNLALLANQVRLF-D-STHYLKAFGIGDVWVAVGWSSDVLPA--VKRMSNVAVV 344 (439)
Q Consensus 278 ~~~~~~~-----~~----~~G~d~~~e~L~~l~~~v~~~-~-~~~~~~~f~~Ge~~~~i~ws~~~~~~--~~~~~~v~~~ 344 (439)
.+..... +. ..|. ...+.+..|..+...+ . ..+....|.+|++.|++.|+++.... .....++.++
T Consensus 138 ~~p~~s~~g~~~~~~~~~~~g~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~Ge~~i~i~~~~~~~~~~~~~~~~~~~~~ 216 (309)
T TIGR01276 138 QDPRTSTPGLGLLLWMQKVYGD-DAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAA 216 (309)
T ss_pred eCCCCCcHHHHHHHHHHHHcCc-cHHHHHHHHHHcCceeCCChHHHHHHHHcCCcCEEEecCCcHHHHhhcccCcccceE
Confidence 6533211 11 2342 2335555665543222 2 23556789999999999998765432 2223467777
Q ss_pred ccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHh
Q 044097 345 VPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELL 422 (439)
Q Consensus 345 vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~ 422 (439)
.|++|...+.++++|+++++|++ +|++||+|++|+|.|..+++. .+..|... ..+|+++.
T Consensus 217 ~~~eG~~~~~~~~ai~k~a~n~e------------~A~~Fidflls~e~Q~~~~~~--~~~~p~~~----~~~~~~~~ 276 (309)
T TIGR01276 217 NFSEGHYLQVEVAARTAASKQPE------------LAQKFLQFLVSPAFQNAIPTG--NWMYPVAN----VTLPAGFE 276 (309)
T ss_pred ecCCCCEeEEEEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHhh--CcccccCC----CCCCHhHH
Confidence 88899999999999999999999 999999999999999998864 24467643 23566654
No 9
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=99.92 E-value=1e-23 Score=212.32 Aligned_cols=243 Identities=19% Similarity=0.192 Sum_probs=171.2
Q ss_pred eEEEEeCCCCcc-----HHHHHHHHhhcCCeEEEEEeeecccc-----------cccceEec--CchhHHHHHHCCCccc
Q 044097 137 PLRVVSLQNSVP-----QSWVKDFMRSQGKRLKFQMNLCASID-----------GIVNNLST--PFNKLSFAIKKRFIEP 198 (439)
Q Consensus 137 ~L~v~~w~~~~~-----~~li~~Fek~~GI~V~~~~~~~~s~~-----------~~~~dv~~--~~~~~~~~i~~Gll~p 198 (439)
+|+||+|+++.. +.++++|++++||+|+++. .+++. .-..||+. +..++..+.++|+|+|
T Consensus 24 ~L~vy~~~~~~~~~~~~~~i~~~Fe~~tgikV~~~~--~~s~~~~~~kl~~e~~~~~~DV~~~~~~~~~~~l~~~gll~~ 101 (330)
T PRK11205 24 VLTVYTYDSFAAEWGPGPAVKKAFEAECGCELKFVA--LEDGVSLLNRLRLEGKNSKADVVLGLDNNLLAAAKQTGLFAP 101 (330)
T ss_pred eEEEEEcccccccCCCchHHHHHHHHHHCCEEEEEe--cCcHHHHHHHHHhcCCCCCCCEEEECCchHHHHHHHCCCccc
Confidence 689999987753 4799999999999999972 12110 11235543 3467888999999999
Q ss_pred ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeec
Q 044097 199 IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMV 278 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~ 278 (439)
++.+. ...++.+.+ .+ + |++||.++..+|+||++.+++ +|+||+||++++++|+|+|.
T Consensus 102 ~~~~~---~~~~~~~~~-----------~~--~--~~~~~~~~~~~l~yn~~~~~~----~P~sw~DL~~~~~~g~i~~~ 159 (330)
T PRK11205 102 SGVDT---SAVTVPGGW-----------ND--D--TFVPYDYGYFAFVYDKEKLKN----PPKSLKELVESDQNWKVIYQ 159 (330)
T ss_pred ccCCh---hhccCcccc-----------cC--C--ceeeEeeeeEEEEEcccccCC----CCCCHHHHhChhhcCCEEec
Confidence 86431 112222221 12 3 579999999999999999975 79999999999999999987
Q ss_pred cChhH---H--HH----hCCHHHHHHHHHHHhhhhcccC--chHHHHHhhcCCeEEEEEcccc-HHHHHHc-CCCeeEEc
Q 044097 279 NSPRE---V--IV----AGGKIAVQQNLALLANQVRLFD--STHYLKAFGIGDVWVAVGWSSD-VLPAVKR-MSNVAVVV 345 (439)
Q Consensus 279 ~~~~~---~--~~----~~G~d~~~e~L~~l~~~v~~~~--~~~~~~~f~~Ge~~~~i~ws~~-~~~~~~~-~~~v~~~v 345 (439)
+.... . +. ..|. ...+.+..++.+...+. ..+..+.|.+|++.|++.|+++ .....++ +.++.+++
T Consensus 160 dp~~s~~~~~~~~~~~~~~g~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~Ge~~~~i~~~~~~~~~~~~~~~~~~~~~~ 238 (330)
T PRK11205 160 DPRTSTPGLGLLLWMKKVYGD-DAPQAWQKLAKKTVTVTKGWSEAYGLFLKGEADLVLSYTTSPAYHIIAEKKDNYAAAN 238 (330)
T ss_pred CCCCCcHHHHHHHHHHHhcCc-hHHHHHHHHHhCCeeeCCChHHHHHHHHcCCccEEEeCCCcHHHHHhhccCCceeEEE
Confidence 53211 1 11 1343 33456667776653332 2456688999999999998864 3333333 34677777
Q ss_pred cCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHh
Q 044097 346 PKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELL 422 (439)
Q Consensus 346 P~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~ 422 (439)
|++|...+.++++|+++++|++ +|++||+||+|+|.|..+++.. +..|.... .+|+++.
T Consensus 239 ~~eG~~~~~~~~ai~k~a~n~e------------~A~~Fi~fllS~e~Q~~~~~~~--~~~p~~~~----~~~~~~~ 297 (330)
T PRK11205 239 FSEGHYLQVEVAARTAASKQPE------------LAQKFLQFMVSPAFQNAIPTGN--WMYPVAKV----TLPAGFE 297 (330)
T ss_pred cCCCCeEEEEEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHhhhhc--eeeecCcc----cCCHHHH
Confidence 8889999999999999999999 9999999999999999997642 34565532 2565553
No 10
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=99.91 E-value=3.5e-23 Score=210.14 Aligned_cols=239 Identities=16% Similarity=0.157 Sum_probs=169.2
Q ss_pred eEEEEeCCCC--ccHHHHHHHHhhcCCeEEEEEe--------eecc-cccccceEecCchhHHHHHHCCCcccccccccc
Q 044097 137 PLRVVSLQNS--VPQSWVKDFMRSQGKRLKFQMN--------LCAS-IDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 137 ~L~v~~w~~~--~~~~li~~Fek~~GI~V~~~~~--------~~~s-~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~ 205 (439)
+|+|+++++. ..+.++++|++++||+|++... .... ....+|.+.....++..++++|+|+|++..
T Consensus 36 ~L~v~~~~~~~~~~~~ii~~Fe~~~gikV~~~~~~s~~~~~kl~~~~~~~~~DVv~~~~~~~~~~~~~Gll~~~~~~--- 112 (349)
T PRK15046 36 AVTVYSADGLEDWYQDVFPAFTKATGIKVNYVEAGSGEVVNRAAKEKSNPQADVLVTLPPFIQQAAAEGLLQPYSSV--- 112 (349)
T ss_pred cEEEEeccchHHHHHHHHHHHHhhhCcEEEEEeCChHHHHHHHHhhhcCCCCCEEEeCcHHHHHHHhCCCccccCcc---
Confidence 5778877542 3478999999999999998621 1110 112243344556778899999999999853
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccCh----
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSP---- 281 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~---- 281 (439)
+.+++.+.+ .|++|+ | +|+.++..+|+||++++++ +|+||+||++++++|+|++.+..
T Consensus 113 -~~~~i~~~~-----------~d~~g~-~-~~~~~~~~~l~Yn~~~~~~----~P~sw~dL~~~~~~gki~~~~p~~s~~ 174 (349)
T PRK15046 113 -NAKAVPAIA-----------KDADGT-Y-APFVNNYLSFIYNPKVLKT----APATWADLLDPKFKGKLQYSTPGQAGD 174 (349)
T ss_pred -chhcCchhh-----------cCCCCC-E-EeeecceeEEEEchhhccC----CCCCHHHHhCHHhCCCEEecCCCcCcc
Confidence 233443322 355675 5 6999999999999999985 79999999999999999886432
Q ss_pred -hHHH----HhCCHHHHHHHHHHHhhhhcccCc--hHHHHHhhcCCeEEEEEcccc-HHHHHHcCCCeeEEccCC--C--
Q 044097 282 -REVI----VAGGKIAVQQNLALLANQVRLFDS--THYLKAFGIGDVWVAVGWSSD-VLPAVKRMSNVAVVVPKS--G-- 349 (439)
Q Consensus 282 -~~~~----~~~G~d~~~e~L~~l~~~v~~~~~--~~~~~~f~~Ge~~~~i~ws~~-~~~~~~~~~~v~~~vP~e--G-- 349 (439)
...+ ...|.+.++++|++++++...+.. ....+.|.+|++.++.++... .....+.++++++++|++ |
T Consensus 175 g~~~~~~~~~~~G~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~Ge~~~~~g~~~~~~~~~~~~~~~~~~~~P~~~~g~~ 254 (349)
T PRK15046 175 GTAVLLLTFHLMGKDKAFDYLAKLQANNVGPSKSTGKLTPLVSKGEIYVANGDLQMNLAQAEHGGPNVKIFFPAKDGGER 254 (349)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHhCCCCCCCcchhhHHhhcCceEEeccHHHHHHHHHhcCCCceEEEecCCCCCCc
Confidence 1111 135777788999999887643432 234578999999887543221 122233457799899975 3
Q ss_pred -ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcc
Q 044097 350 -ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 350 -~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~ 410 (439)
....+.+++|+++++|++ +|++||+|++|+|+|..+++. .+..|...
T Consensus 255 ~~~~~~~~~aI~~~s~n~~------------~A~~Fi~fllS~e~Q~~~a~~--~~~~P~~~ 302 (349)
T PRK15046 255 STFALPYVIGLVKGAPNSE------------NGKKLIDFLLSKEAQTKVSDM--AWGIPVRT 302 (349)
T ss_pred ceeeccceeEEecCCCCHH------------HHHHHHHHHhCHHHHHHHHhh--ccCCCCCc
Confidence 233457899999999999 999999999999999999864 35577653
No 11
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=99.89 E-value=1.9e-22 Score=196.18 Aligned_cols=249 Identities=18% Similarity=0.310 Sum_probs=180.0
Q ss_pred HHHHHHHhhcCCeEEEEEeeeccc---------ccccce--Ee-cCchhHHHHHHCCCcccccccccchhhcccchhHHH
Q 044097 150 SWVKDFMRSQGKRLKFQMNLCASI---------DGIVNN--LS-TPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKV 217 (439)
Q Consensus 150 ~li~~Fek~~GI~V~~~~~~~~s~---------~~~~~d--v~-~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~~~ 217 (439)
+++++|++++||+|+++....+.. .+..++ +. ....++..++++|+|+||+.. ++...+.+.++.
T Consensus 1 ~l~~~f~~~~~i~V~~~~~~~~~~~~~l~~~~~~g~~Pd~dv~~~~~~~~~~~~~~g~l~~L~~~---~~~~~~~~~~~~ 77 (281)
T PF13416_consen 1 KLVKEFEKETGIKVEIQTFPSDDYQQKLQSALASGNAPDIDVVWPDSSWIPQLAEQGLLEDLDDL---ENYDDIPDALEA 77 (281)
T ss_dssp HHHHHHHHHHTEEEEEEEESHHHHHHHHHHHHHTTSSSSESEEEEEHHHHHHHHHTTHBEHHTGH---GGGGGBHHHHHH
T ss_pred CHHHHHHHHhCcEEEEEeCCcHHHHHHHHhhhcCCCccceEEEEECHHHHHHHHHCCCccccchh---hhhccchHHHHh
Confidence 478999999999999973211000 111222 33 456889999999999999953 233444443321
Q ss_pred hhhcCCCcccCCCCCEEEeeeecce-EEEEEeCcccccCCCCCCCCcccccC--ccccCceeeccChhHHH----HhCC-
Q 044097 218 YLRSNDAGEIDPRGKIWAAPYRWGT-MAIGYKKSKFQNHNLAPIEDWKDPWW--PELAGRISMVNSPREVI----VAGG- 289 (439)
Q Consensus 218 ~l~~~~~~~~D~dGk~YgvP~~~~~-~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lkgkI~~~~~~~~~~----~~~G- 289 (439)
...+|++||+|+.+++ .+++||+++|+++ +|+||+||++ .+++|+.++.+...... ...|
T Consensus 78 ---------~~~~G~~y~~P~~~~~~~~~~yn~d~~~~~---~p~t~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 145 (281)
T PF13416_consen 78 ---------FTYDGKLYGVPFDYGTPYGLYYNKDLLKKA---PPKTWDELLEVAKKLKGKYGFPDPASGWMQWALIAGGK 145 (281)
T ss_dssp ---------TEETTEESEEEEEEEEEEEEEEETTTHSHS---GTSSHHHHHHHHHHHTTHEEEESCHHHHHHHHHHHTTS
T ss_pred ---------cCCCCeEEEEEEeeccceEEEEchhhcccC---CcccHHHHhhhHHHhcccccccccchhHhhhhhhccCC
Confidence 1335999999999886 8999999999985 8999999999 68899888766554322 1122
Q ss_pred ----------HHHHHHHHHHHhhhhcccCc-hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEE
Q 044097 290 ----------KIAVQQNLALLANQVRLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWA 358 (439)
Q Consensus 290 ----------~d~~~e~L~~l~~~v~~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~a 358 (439)
...+.+.+.++.++...+.. .+..+.|.+|+++|.+.+++.+..+.+.+.++++.+|+.|...++..++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~~~ 225 (281)
T PF13416_consen 146 SFDDDGTSENFVEALEFLKELYDNGYFYGSGDDARQLFASGKVAMIIGGSWSISNLQKAGPDFGVAPPKDGTFVGGNGFA 225 (281)
T ss_dssp ECTEETTSHHHHHHHHHHHHHHHTTSEETSHHHHHHHHHTTSESEEEEEGHHHHHHHHTTTTEEEEECTTTEEEEEEEEE
T ss_pred chhcccCCHHHHHHHHHHHHHHHhcccccchhHHHHHhcCCCeeeecccHhHHHHHHHhCCCeeEecCccccccCcceEE
Confidence 13566777777766543332 4577899999999999999888877777788998888888888889999
Q ss_pred EecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCCCCC
Q 044097 359 IPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVD 429 (439)
Q Consensus 359 I~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~~~~ 429 (439)
|+++++|++ ..+|++||+|++|+|.|..+.+. .|+ .|...+ +..++++++. |.+.
T Consensus 226 i~~~~~~~~----------~~aA~~fl~~l~s~e~q~~~~~~-~g~-~p~~~~---~~~~~~~~~~-p~~~ 280 (281)
T PF13416_consen 226 IPKNSKNPE----------AEAAWEFLKFLTSPEGQAEWAEA-TGY-LPVNKD---VYESDEYKKD-PAMK 280 (281)
T ss_dssp EBTTSSTHH----------HHHHHHHHHHHTSHHHHHHHHHH-HTS-EESBHH---HHHSHHHHTS-HTTS
T ss_pred EeCCCChHH----------HHHHHHHHHHHcCHHHHHHHHHH-hCC-CCCChh---hcCCHHHhhC-cccc
Confidence 999999998 22399999999999999999875 455 555532 2235666543 5444
No 12
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=99.89 E-value=1.3e-22 Score=194.95 Aligned_cols=201 Identities=21% Similarity=0.372 Sum_probs=155.5
Q ss_pred ceEe-cCchhHHHHHHCCCcccccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCC
Q 044097 178 NNLS-TPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHN 256 (439)
Q Consensus 178 ~dv~-~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~G 256 (439)
|.+. .+...+.+++++|+|+||+.. .++++.+.+. ...|++|. | +|+.++..+|+||++.+++.+
T Consensus 5 Dv~~~~~~~~~~~~~~~gll~p~~~~----~~~~~~~~~~--------~~~d~~g~-~-~~~~~~~~~i~yN~~~~~~~~ 70 (242)
T PF13343_consen 5 DVIVSLDPDFMERAKEAGLLQPYDPS----NIDNVPNEFE--------SFKDPDGY-W-VPYGYGPVVIAYNTDKLKERD 70 (242)
T ss_dssp SEEEEESHHHHHHHHHTTGBE---HH----HHHHHSHCSG--------GGBHTTSS-S-EEEEEEEEEEEEETTTSSSGG
T ss_pred eEEEECCHHHHHHHHHCcCeeeCCcc----chhhCcchHH--------hccCCCCe-E-EEEEEEEEEEEEEhhhcCCCC
Confidence 3344 567888999999999999953 3455553221 12466675 4 599999999999999998854
Q ss_pred CCCCCCcccccCccccCceeeccChhHH---H-H----hCCHHHHHHHHHHHhhhhcccCchHHHHHhhcCC--eEEEEE
Q 044097 257 LAPIEDWKDPWWPELAGRISMVNSPREV---I-V----AGGKIAVQQNLALLANQVRLFDSTHYLKAFGIGD--VWVAVG 326 (439)
Q Consensus 257 l~~P~TW~DL~dp~lkgkI~~~~~~~~~---~-~----~~G~d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge--~~~~i~ 326 (439)
+ |+||+||++|+|+|+|++.+..... + . ..|.+.+.+++..++.+...+...+..+.+.+|+ +.+++.
T Consensus 71 ~--P~sw~dL~~p~~~g~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~l~~n~~~~~~~~~~~~~~~Ge~~~~i~~~ 148 (242)
T PF13343_consen 71 L--PTSWADLLDPKYKGKIALPDPNSDTGLAFLLALAEAYGEDAGWEWLRELKANGATFSSSQAAQAVASGEGAVAIGIS 148 (242)
T ss_dssp T--TSSGGGGGSGGGTTTEEEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBSSSCHHHHHHHHHTTSCSEEEEEH
T ss_pred C--CccHHHHHHHHhCCCEEECCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccccchhhhhHhhCCCceEEEEEe
Confidence 3 8999999999999999998754221 1 1 2467788999999999877666667889999999 777777
Q ss_pred ccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCC
Q 044097 327 WSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS 406 (439)
Q Consensus 327 ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~ 406 (439)
|.+......+.+ ++.+++|++|+..|.++++|.++++|++ +|++||+||+|+|.|..+++. ++..
T Consensus 149 ~~~~~~~~~~~~-~i~~v~P~eG~~~~~~~~~i~k~a~~~~------------~A~~fi~~lls~e~q~~~~~~--~~~~ 213 (242)
T PF13343_consen 149 WYSRAAQAKEKG-PIKFVYPEEGTVVWPDGIAIVKGAPNPE------------AAKKFINFLLSPEAQKILAQA--GFEY 213 (242)
T ss_dssp HHHHHHHHCTTT-TEEEE-TTTGBEEEEEEEEEBTT-STHH------------HHHHHHHHHTSHHHHHHHHHH--CTSE
T ss_pred hHHHHHHhhhcC-CeEEEecCCCcEEEEEEEEEeCCCCCHH------------HHHHHHHHHCCHHHHHHHHHh--CcCc
Confidence 777666655545 9999999999999999999999999999 999999999999999999875 3457
Q ss_pred CCc
Q 044097 407 PSA 409 (439)
Q Consensus 407 P~~ 409 (439)
|..
T Consensus 214 P~~ 216 (242)
T PF13343_consen 214 PVN 216 (242)
T ss_dssp ESS
T ss_pred CCC
Confidence 764
No 13
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=99.87 E-value=1.1e-20 Score=196.29 Aligned_cols=258 Identities=16% Similarity=0.178 Sum_probs=155.4
Q ss_pred ceeEEEEeCCCC----ccHHHHHHHHhh-cCCeEEEEEe---------eecccccccceEe-cCc----hhHHHHHHCCC
Q 044097 135 TVPLRVVSLQNS----VPQSWVKDFMRS-QGKRLKFQMN---------LCASIDGIVNNLS-TPF----NKLSFAIKKRF 195 (439)
Q Consensus 135 ~~~L~v~~w~~~----~~~~li~~Fek~-~GI~V~~~~~---------~~~s~~~~~~dv~-~~~----~~~~~~i~~Gl 195 (439)
+++|+++.|.+. ..++++++|+++ +||+|+++.. ...++ . .+||+ ... .++..+++.|+
T Consensus 33 ~~~i~~~~~~~~~~~~~~~~~~~~F~~~~~~i~V~~~~~~~~~~kl~~~~~sg-~-~PDi~~~~~~~~~~~~~~~~~~g~ 110 (437)
T TIGR03850 33 EVTLKVAAFEGGYGTKMWEEVVEAFEKSHEGVKVELTVSKNLEDVITPQIQAG-D-YPDVVYLATGRESGLTETLIKDKA 110 (437)
T ss_pred CceEEEEEecCCchHHHHHHHHHHHHHHCCCceEEEEeCccHHHHHHHHHhCC-C-CCCEEEeCCCCCcccHHHHHhcCC
Confidence 347777776532 236799999999 4999998621 01122 2 34554 332 46788999999
Q ss_pred cccccccccch--hh-ccc-chhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--
Q 044097 196 IEPIAEAEDQD--WF-KRL-SHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP-- 269 (439)
Q Consensus 196 l~pl~~~~~~~--~~-~~i-~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp-- 269 (439)
|.||++....+ .. ..+ ++..+.+++...... ..+|++||+|+..++.+++|||++|+++|+++|+||+||.+.
T Consensus 111 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~ygvP~~~~~~~l~yNkdl~~~aG~~~P~Twde~~~~~~ 189 (437)
T TIGR03850 111 LADLTDVLDMKVPGEDVTVKDKILPGFVGSSATNP-YGDGKTYLAPMFYSPTGLFYNKTLFEEKGWEVPTTWDEMFALGD 189 (437)
T ss_pred cccChHHHcCcCCCcchhHHhhhChHhhhcccccc-cCCCeEEEEEeecceEEEEEcHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998641000 00 011 112222232110000 125999999999999999999999999999999999999874
Q ss_pred ccc--Cc--eeecc-ChhH-HH-----HhCCH----------------H---HHHHHHHHHhhhhc-c---c----CchH
Q 044097 270 ELA--GR--ISMVN-SPRE-VI-----VAGGK----------------I---AVQQNLALLANQVR-L---F----DSTH 311 (439)
Q Consensus 270 ~lk--gk--I~~~~-~~~~-~~-----~~~G~----------------d---~~~e~L~~l~~~v~-~---~----~~~~ 311 (439)
+++ |. +.+.. .... .+ ..+|. + .+.+++.++.++.. . . ..++
T Consensus 190 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 269 (437)
T TIGR03850 190 KAKAEGISLFTYPTTGYFDAFFYALLAEAGGDDFFNKAMNYEEGIWDTEEAKKAFDTVGKLATYTEPTTVANANNQDFTK 269 (437)
T ss_pred HHHhcCCceeecCCcchHHHHHHHHHHHhcCHHHHHHHhcCCCCccCCHHHHHHHHHHHHHHHhcCCCcccccccccccH
Confidence 343 21 11111 1111 11 11221 1 23344444444211 1 1 1123
Q ss_pred HHHHhhcCCeEEEEEccccHHHHHHc----CCCeeE-EccC--CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHH
Q 044097 312 YLKAFGIGDVWVAVGWSSDVLPAVKR----MSNVAV-VVPK--SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPL 380 (439)
Q Consensus 312 ~~~~f~~Ge~~~~i~ws~~~~~~~~~----~~~v~~-~vP~--eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~a 380 (439)
..+.|.+|+++|.+.++..+..+.+. +.++++ .+|. .| ...+...++|+++++|++ +
T Consensus 270 ~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~v~~~s~~~~------------a 337 (437)
T TIGR03850 270 NQQLVLDNKALFMPNGTWVVGEMKDAPRADGFEWGMTALPAVKEGGDRYSYTFFEQMWIPAAAKNKD------------L 337 (437)
T ss_pred HHHHHHcCCeEEEeCCcchHHHhhcCCCCCCCceeeeeCCccCCCCCcccccCcceeEEECCCCCHH------------H
Confidence 45789999999988655544444332 124554 3674 22 123556899999999999 9
Q ss_pred HHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 381 IHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 381 A~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
|++||+|++++|.|..+.+ .++.+|..
T Consensus 338 A~~Fi~~l~s~e~~~~~~~--~g~~~p~~ 364 (437)
T TIGR03850 338 AKEFIAFLYSDEAAKIFAK--SGAVQPVK 364 (437)
T ss_pred HHHHHHHHhCHHHHHHHHh--cCCcCCcc
Confidence 9999999999999988553 46666755
No 14
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=99.85 E-value=8.4e-21 Score=186.47 Aligned_cols=247 Identities=19% Similarity=0.216 Sum_probs=179.1
Q ss_pred eEEEEeCCCC-----ccHHHHHHHHhhcCCeEEEEEeeeccc-----------ccccceEec--CchhHHHHHHCCCccc
Q 044097 137 PLRVVSLQNS-----VPQSWVKDFMRSQGKRLKFQMNLCASI-----------DGIVNNLST--PFNKLSFAIKKRFIEP 198 (439)
Q Consensus 137 ~L~v~~w~~~-----~~~~li~~Fek~~GI~V~~~~~~~~s~-----------~~~~~dv~~--~~~~~~~~i~~Gll~p 198 (439)
+|+||..... ..++++++||+++|++|+++. .+++ ....+|++. +...+.++.+.|+|.|
T Consensus 27 ~LtVytydSF~~ewg~Gp~vk~~FE~~~~~~v~fV~--~~d~v~llnRl~leg~~~~ADvvvGldn~~l~~A~~~glf~~ 104 (336)
T COG4143 27 TLTVYTYDSFASEWGPGPKVKKAFEAEYGCKVNFVA--LGDGVELLNRLILEGKNPKADVVVGLDNNLLARARETGLFAP 104 (336)
T ss_pred eEEEEEEeeeecccCCcHHHHHHHHHHhCceEEEEE--cCcHHHHHHHHHHcCCCCCCcEEEecChHHHHHHHhcCCccc
Confidence 4555554332 225899999999999999982 2221 122456664 5778899999999999
Q ss_pred ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeec
Q 044097 199 IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMV 278 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~ 278 (439)
...+. .. .++...| ..|. ..+||++|..+|+||++++++ ||+|.+||.+++++++|...
T Consensus 105 ~~~d~--~~-~~vp~~~------------~~d~--f~~P~DyGy~a~vYd~~~~~~----ppksL~dL~~~~y~~~ii~q 163 (336)
T COG4143 105 YGVDA--SD-VPVPEGW------------KIDT--FALPYDYGYFAFVYDKTKLKN----PPKSLKDLVEPEYAGKIIYQ 163 (336)
T ss_pred CCCCc--cc-CCCCccc------------ccCc--cccccccceEEEEEchHHhcC----CcccHHHhcCccccCcEEec
Confidence 98542 01 2233333 2223 379999999999999999997 89999999999999999876
Q ss_pred cChh----HHH-----HhCCHHHHHHHHHHHhhhh-cccC-chHHHHHhhcCCeEEEEEccccHHHHHH-cC-CCe-eEE
Q 044097 279 NSPR----EVI-----VAGGKIAVQQNLALLANQV-RLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVK-RM-SNV-AVV 344 (439)
Q Consensus 279 ~~~~----~~~-----~~~G~d~~~e~L~~l~~~v-~~~~-~~~~~~~f~~Ge~~~~i~ws~~~~~~~~-~~-~~v-~~~ 344 (439)
|..+ -.| ..+|.|.+.+++++|+++. .... .++...+|..||+.|++.|+.+-.+..- ++ .+. ...
T Consensus 164 dPrtSspGl~fLlW~~svyg~d~~~~~W~kL~~~~v~v~~gWSeaY~aFt~GEap~VLSYtTspay~~~~~~~~~~~a~~ 243 (336)
T COG4143 164 DPRTSSPGLGFLLWTISVYGEDGAPEAWAKLADNGVTVTKGWSEAYGAFTKGEAPLVLSYTTSPAYHVYPEKKDRYAAAL 243 (336)
T ss_pred CCCCCCccHHHHHHHHHHhccccHHHHHHHHHhCCeEecCcHHHHHHHHhCCccceEEEeccCcchhcccccccccchhc
Confidence 5322 222 1468899999999999884 3222 1344459999999999999876654321 11 122 223
Q ss_pred ccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcC
Q 044097 345 VPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKG 424 (439)
Q Consensus 345 vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~ 424 (439)
++ +|..+.+++.++.|+++|++ .|.+|++||+|+|.|..+...+ .+.|...+ ..||+++...
T Consensus 244 f~-eG~ylqiEgaa~~k~~knpe------------LA~~F~~FmlS~e~Q~~ip~~n--wm~Pa~~~---~~Lp~~f~~~ 305 (336)
T COG4143 244 FP-EGHYLQVEGAAVLKGAKNPE------------LADKFLQFMLSPEFQDAIPTTN--WMYPAVKN---VPLPAVFDAL 305 (336)
T ss_pred CC-CCceeEEEeeeeecCCCCHH------------HHHHHHHHHhCHHHHhhCCccc--eeeecCCC---CcCCHHHHhh
Confidence 44 57889999999999999999 9999999999999999998654 66787643 6799998654
No 15
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=99.82 E-value=7.2e-19 Score=180.34 Aligned_cols=237 Identities=18% Similarity=0.171 Sum_probs=149.1
Q ss_pred eEEEEeCCC---CccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccccc
Q 044097 137 PLRVVSLQN---SVPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 137 ~L~v~~w~~---~~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
+|+++.+.+ ...++++++|++++||+|+++.. ...+++ .++.+.....++..++++|+|.||++..
T Consensus 32 ~l~~w~~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~~l~~~~asg~-~PDv~~~~~~~~~~~~~~G~l~~l~~~~- 109 (396)
T PRK09474 32 KLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEVTPSK- 109 (396)
T ss_pred eEEEEECCCchhHHHHHHHHHHHHhhCCEEEEEecchHHHHHHHHhhcCC-CCcEEEeCchhHHHHHHCCccccCCccH-
Confidence 567776542 13468999999999999998721 011222 2433345667899999999999998642
Q ss_pred chhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec-c
Q 044097 205 QDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV-N 279 (439)
Q Consensus 205 ~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~-~ 279 (439)
...+++. +..... ..+ +|++||+|+..++.+++||+++|++ +|+||+||.+. +++ |+..+. +
T Consensus 110 -~~~~~~~---~~~~~~---~~~--dg~~YgvP~~~~~~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~~ 176 (396)
T PRK09474 110 -AFKDKLV---PFTWDA---VRY--NGKLIGYPIAVEALSLIYNKDLVPT----PPKTWEEIPALDKELKAKGKSAIMWN 176 (396)
T ss_pred -HHHhhcC---HHHHHH---eeE--CCEEEEEeeeccceeEEEehhhccC----CCcCHHHHHHHHHHHHhCCCceeecc
Confidence 1112222 211211 223 4999999999999999999999985 89999999863 343 432221 1
Q ss_pred --ChhHH---HHh---------CC--------H--H---HHHHHHHHHhhhhc---ccCchHHHHHhhcCCeEEEEEccc
Q 044097 280 --SPREV---IVA---------GG--------K--I---AVQQNLALLANQVR---LFDSTHYLKAFGIGDVWVAVGWSS 329 (439)
Q Consensus 280 --~~~~~---~~~---------~G--------~--d---~~~e~L~~l~~~v~---~~~~~~~~~~f~~Ge~~~~i~ws~ 329 (439)
.+... +.. .| . + .+.+++.++.+... .....+..+.|.+|+++|++.++.
T Consensus 177 ~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g~w 256 (396)
T PRK09474 177 LQEPYFTWPLIAADGGYAFKFENGGYDVKDVGVNNAGAKAGLQFLVDLVKNKHMNADTDYSIAEAAFNKGETAMTINGPW 256 (396)
T ss_pred CCchHhHHHHHHccCCeeeccCCCCCCccccCcCCHHHHHHHHHHHHHHHcCCCCCCCChhHHHHHHhcCCeeEEEcCCc
Confidence 11100 100 01 0 1 23344454543311 111223457899999999887655
Q ss_pred cHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 330 DVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 330 ~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
.+..+.+.+.+++++ +|. .| ...+..+++|+++++|++ +|++||+ |++|++.|..+.+.
T Consensus 257 ~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~~~e------------aA~~fi~~~l~s~~~~~~~~~~ 322 (396)
T PRK09474 257 AWSNIDKSGINYGVTVLPTFNGKPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLETVNKD 322 (396)
T ss_pred chHHHHhcCCceEEEeCCCCCCCCCCceeeeeEEEEeCCCCCHH------------HHHHHHHHHhcCHHHHHHHhhc
Confidence 554444444566664 674 22 123345788999999998 9999996 99999999988753
No 16
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=99.81 E-value=1.1e-18 Score=182.58 Aligned_cols=254 Identities=16% Similarity=0.206 Sum_probs=153.2
Q ss_pred ceeEEEEeCCCC----ccHHHHHHHHhhc-CCeEEEEEe---------eecccccccceEec-C---chhHHHHHHCCCc
Q 044097 135 TVPLRVVSLQNS----VPQSWVKDFMRSQ-GKRLKFQMN---------LCASIDGIVNNLST-P---FNKLSFAIKKRFI 196 (439)
Q Consensus 135 ~~~L~v~~w~~~----~~~~li~~Fek~~-GI~V~~~~~---------~~~s~~~~~~dv~~-~---~~~~~~~i~~Gll 196 (439)
+++|+++.|.+. ..+.++++|++++ ||+|+++.. ..+++ + .+||+. . ..++..+++.|+|
T Consensus 39 ~~~l~~~~~~~~~~~~~~~~~~~~F~~~~p~i~V~~~~~~~~~~kl~~~~asg-~-~PDi~~~~~~~~~~~~~~~~~g~l 116 (450)
T TIGR03851 39 DAPLEVVIFNGGYGDDYAKDAEPLYKKKYPGATVKVSPTQKIAPQLQPRFAGG-N-PPDLIDNSGADAMDMSALVAEGQL 116 (450)
T ss_pred CCceEEEEEcCCccHHHHHHHHHHHHHHCCCcEEEEeechhhHHHHHHHHhCC-C-CCcEEeecCcccccHHHHHhCCCc
Confidence 446666665432 3356889999997 999999721 11222 2 346653 2 2368899999999
Q ss_pred ccccccccchhhc----ccchhH-HHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--
Q 044097 197 EPIAEAEDQDWFK----RLSHKW-KVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP-- 269 (439)
Q Consensus 197 ~pl~~~~~~~~~~----~i~~~~-~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp-- 269 (439)
+||++....++++ .+.+.+ +..+. ...+ +|++||+|+..++.+++|||++|+++|+++|+||+||.+.
T Consensus 117 ~~L~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--dG~~ygvP~~~~~~~l~YNkdl~~~aGl~~P~Twde~~~~~~ 191 (450)
T TIGR03851 117 EDLTPLFDAPSWDDPGKKVRDTLLPGVLE---PGTF--DGKPYALNYVYTVYGLWYSATLFEENGWTPPKTWDEFLALGE 191 (450)
T ss_pred ccchHHhccccccccchhHhhhhchhhhh---hceE--CCEEEEEeecceeeEEEEcHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998642101111 111111 21121 1234 4999999999999999999999999999999999999874
Q ss_pred ccc--Cc--eeecc-C-hh---HHH-----HhCCH----------------HHHHH---HHHHHhhh--h-cc---cCch
Q 044097 270 ELA--GR--ISMVN-S-PR---EVI-----VAGGK----------------IAVQQ---NLALLANQ--V-RL---FDST 310 (439)
Q Consensus 270 ~lk--gk--I~~~~-~-~~---~~~-----~~~G~----------------d~~~e---~L~~l~~~--v-~~---~~~~ 310 (439)
+++ |. +.+.. . +. ..+ ..+|. +.+.+ .+.++... + .. ....
T Consensus 192 ~l~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~ 271 (450)
T TIGR03851 192 EAKAKGIAPFAYAGKHAPYYYRELLLDSAAKIGGDEVVKDIDNLEDGAWKHPAVKAAFTAWEELVKKGYILPGGAGLDHT 271 (450)
T ss_pred HHHHcCCcceeecCCCCchhHHHHHHHHHHHhcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHcCCcCCCCCCCCcH
Confidence 333 32 22321 1 11 111 01221 12233 33334321 1 11 1123
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHcCC-CeeE---EccC-CCc-----e----eeeeEEEEecCCCCcccccCCCCCC
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKRMS-NVAV---VVPK-SGA-----S----LWADLWAIPAASRLETKQIGGQVRG 376 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~-~v~~---~vP~-eG~-----~----~~~~~~aI~k~a~~~e~~~~~~~~~ 376 (439)
+....|.+|+++|.+.++.....+.+..+ ++++ .+|. .+. . ..+..++|+++++|++
T Consensus 272 ~~~~~f~~G~~a~~~~g~w~~~~~~~~~~~~~~~~~~p~P~~~~~~~~~~~~~~~~~g~~~~I~~~s~~~~--------- 342 (450)
T TIGR03851 272 QSQTAWNQGKAAFYPSGSWLENEMKSQTPADFEMTGAPTPSLTASDKLPYGALHAAAGEPFIVPAKAKNPA--------- 342 (450)
T ss_pred HHHHHHHCCCcEEEEcCccHHHHHhhcCCCCcceeeeecCCCCCcccCCcccccccCCceeEEECCCCCHH---------
Confidence 45678999999998865443333333222 2443 3553 111 1 1246799999999999
Q ss_pred CHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 377 PSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 377 ~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
+|++||+|++++|.|..+.+. . +..|..
T Consensus 343 ---aA~~fl~~l~s~e~~~~~~~~-~-g~ip~~ 370 (450)
T TIGR03851 343 ---GGLEYLRIMLSKEGAANFTEL-T-KSLTVV 370 (450)
T ss_pred ---HHHHHHHHHhCHHHHHHHHHh-c-CCCccc
Confidence 999999999999999999865 3 446654
No 17
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=9.3e-19 Score=174.47 Aligned_cols=219 Identities=17% Similarity=0.173 Sum_probs=159.9
Q ss_pred HHHHHHhhcCCeEEEEEeeecccc-----------cccceEecC--chhHHHHHHCCCcccccccccchhhcccchhHHH
Q 044097 151 WVKDFMRSQGKRLKFQMNLCASID-----------GIVNNLSTP--FNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKV 217 (439)
Q Consensus 151 li~~Fek~~GI~V~~~~~~~~s~~-----------~~~~dv~~~--~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~~~ 217 (439)
+++.|++++||+|++. ..++++ ...+||..+ ...+..+.+.|+++|+.... ...+....
T Consensus 1 ~~~~f~~~~gikv~~~--~~~s~~~~~~~~~e~~~~~~aDv~~~~~~~~~~~l~~~gll~~y~~~~----~~~i~~~~-- 72 (299)
T COG1840 1 LIKAFEKKPGIKVEFV--DAGSGELLARIIAEKGNPQAADVLWGGAPVSLDQLKEAGLLQPYKSPE----LDEIPAWA-- 72 (299)
T ss_pred CchhhhhccCceEEee--eCCcHHHHHHHHHhhcCCCCCcEEEecCcchHHHHHhcCCccccCCcc----Hhhhhhhc--
Confidence 3688999999999997 122111 123466543 45677888999999988732 23343332
Q ss_pred hhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChh--HHH----H--hCC
Q 044097 218 YLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPR--EVI----V--AGG 289 (439)
Q Consensus 218 ~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~--~~~----~--~~G 289 (439)
.++++. |+.. .++..++.||++.+++...+.|++|+||++|++||+|.+.+... ..+ . ..|
T Consensus 73 ---------~~~~~~-~~~~-~~~~~~~~~n~~~~~~~~~~~P~~w~DL~~p~~kg~i~~~~p~~s~~~~~~~~~~~~~G 141 (299)
T COG1840 73 ---------PDPDGA-YGGG-YVGPLVFAVNTDYNKDLLKPVPKSWADLAKPEYKGKVQMADPTSSGTAYAALLALQAYG 141 (299)
T ss_pred ---------cchhcC-CCcc-eEeeEEEEEehhhccccCCCCCCCHHHhcCHhhcCCccccCCcccHHHHHHHHHHHhcC
Confidence 233232 3222 57788999999999997666799999999999999996654321 211 1 568
Q ss_pred HHHHHHHHHHHhhhhcc--cCc-hHHHHHhhcCCeEEEEEcccc--HHHHHHcCCCeeEEccCCCceeeeeEEEEecCCC
Q 044097 290 KIAVQQNLALLANQVRL--FDS-THYLKAFGIGDVWVAVGWSSD--VLPAVKRMSNVAVVVPKSGASLWADLWAIPAASR 364 (439)
Q Consensus 290 ~d~~~e~L~~l~~~v~~--~~~-~~~~~~f~~Ge~~~~i~ws~~--~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~ 364 (439)
.+.+.++|..+..|... ..+ ....+.++.|++.+++++... ......++.++.+++|++|+.+.+..++|.++++
T Consensus 142 ~~~~~~~l~~l~~n~~~~~~~~~~~~~~~va~Ge~~vg~~~~~~~~~~~~~~~~~~v~iv~P~~G~~v~~~~vaiik~a~ 221 (299)
T COG1840 142 EEKGWAYLKGLAANLATYTGGSSSVVAKVVAGGEAAVGLGNLYYGAYAKDKAKGAPVEVVYPEEGTGVNPSGVALLKKAK 221 (299)
T ss_pred hHHHHHHHHHHHHhcccccCCCcHHHHHHhhcCCceEEEEeeccHHHHHhhccCCceEEEecCCCceeeeeeeeeecCCC
Confidence 88899999999988643 222 345578899999999998885 2222234568999999999999999999999999
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhh
Q 044097 365 LETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQE 400 (439)
Q Consensus 365 ~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~ 400 (439)
|++ +|++||+|++|+|+|..+.+.
T Consensus 222 ~~e------------~Ak~fid~llS~egQ~~~~~~ 245 (299)
T COG1840 222 NPE------------AAKLFIDFLLSKEGQEILAKK 245 (299)
T ss_pred CHH------------HHHHHHHHHcCHHHHHHHHhc
Confidence 999 999999999999999877654
No 18
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=99.77 E-value=1e-17 Score=172.90 Aligned_cols=233 Identities=15% Similarity=0.197 Sum_probs=154.4
Q ss_pred HHHHHHHHhhcCCeEEEEEeee---------cccccccceE-ecCchhHHHHHHCCCcccccccccchhhcccchhHHHh
Q 044097 149 QSWVKDFMRSQGKRLKFQMNLC---------ASIDGIVNNL-STPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVY 218 (439)
Q Consensus 149 ~~li~~Fek~~GI~V~~~~~~~---------~s~~~~~~dv-~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~~~~ 218 (439)
.+.++.|++++||+|+++...+ +...+.-+|| +.+.+|++.+.++|+|.||+++. ....+..+..
T Consensus 57 ~~~~~kfek~~gi~V~i~~~~~~d~~~~~~~~~paGqgpDi~~~~hD~iG~~a~~G~l~~i~~~~-----~~~~~~~~~~ 131 (420)
T COG2182 57 KEAAAKFEKETGIKVKIVEEDYDDLLEKFLLAAPAGQGPDIFVWAHDRIGGLAEAGLLLEIDPYA-----TKYTDFYPAA 131 (420)
T ss_pred HHHHHHHHHHHCCeEEEEecCcccHHHHhhcccCCCCCCCEEEecchhHHHHHhCCcccccCcch-----hhhhccchhh
Confidence 5788999999999999973221 1112223455 46789999999999999998863 2222333333
Q ss_pred hhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc----Cce-eeccChhHHHH-----
Q 044097 219 LRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA----GRI-SMVNSPREVIV----- 286 (439)
Q Consensus 219 l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk----gkI-~~~~~~~~~~~----- 286 (439)
+.. ..++ |++||+|....+.+|+|||+++++ +|+||+||..- +.+ |++ ++.-+..+.+-
T Consensus 132 ~~a---~~y~--GkiYGlP~~~Et~~L~YNKdlv~~----~P~T~~el~~~ak~~~~~~~g~~~~~~~~~~~~Y~~y~~~ 202 (420)
T COG2182 132 LVA---ATYK--GKLYGLPQAVETLALYYNKDLVPE----PPKTWEELEALAKEAKDKGWGKSHGFLADLTNFYYSYGLI 202 (420)
T ss_pred hhh---hhcC--CEEEeccHhhhhhhhheeccccCC----CcccHHHHHHHHHHhhhccCCceeeeecchhhhHhhhhhh
Confidence 322 2465 999999999999999999999997 79999999763 233 443 33222222220
Q ss_pred --hC--------CH-------------HHHHHHHHHHhhhhcccC----chHHHHHhhcCCeEEEEEccccHHHHHHcCC
Q 044097 287 --AG--------GK-------------IAVQQNLALLANQVRLFD----STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS 339 (439)
Q Consensus 287 --~~--------G~-------------d~~~e~L~~l~~~v~~~~----~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~ 339 (439)
++ |. -.+...+..+... .... .+-...+|..|++++.+.+...+.....-+.
T Consensus 203 ~~~GgyvF~~~~g~~~~~d~gl~n~G~i~g~~~~~~~~~~-g~~~~~~~~~~~~slF~~G~aa~~i~GPW~~~~~~~~g~ 281 (420)
T COG2182 203 AGYGGYVFGKENGKYDPKDIGLANAGAIEGANFLKSWYKK-GLIPEDVAGDFAQSLFTEGKAAAIINGPWSISAYKDAGI 281 (420)
T ss_pred ccCCcEEecCCCCccchhhccCccccchHHHHHHHHHHHc-CCCCcccccHHHHHHHhcCCceEEecCCCccchhhhcCc
Confidence 11 10 1233444444433 1111 1225678999999998876555544444456
Q ss_pred CeeEE-ccC-C-C----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcc
Q 044097 340 NVAVV-VPK-S-G----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 340 ~v~~~-vP~-e-G----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~ 410 (439)
++++. +|+ . | ...++-+|.|++.++|++ +|.+|++|++.++.|..+..+ .+-.|...
T Consensus 282 n~GvaplP~~~~g~~~~pf~Gv~~~~Vsa~skn~~------------~A~~f~~~~t~~~~~~~~~~~--~~~ipa~~ 345 (420)
T COG2182 282 NYGVAPLPTLNNGKKPKPFSGVKGYVVSAASKNKE------------AAAKFVKYFTNPKNQKLLYDE--AGEIPANK 345 (420)
T ss_pred ccceeecCCCCCCCCcCCcccceEEEecCCCCcHH------------HHHHHHHHhhhHHHHHHHHHh--cCCcchhH
Confidence 66664 664 1 2 234557899999999999 999999999999999987764 34466543
No 19
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=99.69 E-value=7.8e-16 Score=160.59 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=140.8
Q ss_pred cHHHHHHHHhhc-CCeEEEEEe--e-------ecc-cccccceEe-cCchhHHHHHHCCCcccccccccchhhc-ccchh
Q 044097 148 PQSWVKDFMRSQ-GKRLKFQMN--L-------CAS-IDGIVNNLS-TPFNKLSFAIKKRFIEPIAEAEDQDWFK-RLSHK 214 (439)
Q Consensus 148 ~~~li~~Fek~~-GI~V~~~~~--~-------~~s-~~~~~~dv~-~~~~~~~~~i~~Gll~pl~~~~~~~~~~-~i~~~ 214 (439)
.++++++|++++ ||+|+.+.. + .+. ..+..+||. ....+...+++.|+|+||++........ +.++.
T Consensus 42 ~~~~~~~F~~~~p~i~V~~~~~~~~~~~~~~~~~a~~~g~~PDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~ 121 (438)
T PRK10974 42 VDSLAQRFNASQPDYKIVPVYKGNYEQSLAAGIAAFRSGNAPAILQVYEVGTATMMASKAIKPVYDVFKDAGIPFDESQF 121 (438)
T ss_pred HHHHHHHHHHhCCCeEEEEeeeccHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHhhCCCcccHHHHHhhcCCCCChHHh
Confidence 468999999997 999988621 0 010 011134554 3455667888999999997641000000 11122
Q ss_pred HHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCC---CCCCcccccCc--ccc--Cce-eec---cChhH
Q 044097 215 WKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLA---PIEDWKDPWWP--ELA--GRI-SMV---NSPRE 283 (439)
Q Consensus 215 ~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~---~P~TW~DL~dp--~lk--gkI-~~~---~~~~~ 283 (439)
.+..... ...+-+|++||+|+..++.+++|||++|+++|++ +|+||+||.+. +++ |.. ++. .....
T Consensus 122 ~~~~~~~---~~~~~~G~~YglP~~~~~~~l~YNkdlf~~aGi~~~~~P~Twde~~~~a~~l~~~~~~~g~~~~~~~~~~ 198 (438)
T PRK10974 122 VPTVAGY---YSDAKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLAAYAAKLRAAGMKCGYASGWQGWIQ 198 (438)
T ss_pred chHHHhh---cccCCCCcEEEeeccCCCceEEEcHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCCcccccccccchh
Confidence 2222211 1111359999999999999999999999999985 69999999874 333 211 111 11000
Q ss_pred --H--------HH-h-CCH-----------HHHH---HHHHHHhhh-hcccC--chHHHHHhhcCCeEEEEEccccHHHH
Q 044097 284 --V--------IV-A-GGK-----------IAVQ---QNLALLANQ-VRLFD--STHYLKAFGIGDVWVAVGWSSDVLPA 334 (439)
Q Consensus 284 --~--------~~-~-~G~-----------d~~~---e~L~~l~~~-v~~~~--~~~~~~~f~~Ge~~~~i~ws~~~~~~ 334 (439)
. +. . .|. +++. +.+..+... ...+. .++..+.|.+|+++|.+.+++.+..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~a~~~~gsw~~~~~ 278 (438)
T PRK10974 199 LENFSAWHGLPFASKNNGFDGTDAVLEFNKPEQVKHIALLEEMNKKGDFTYVGRKDESTEKFYNGDCAITTASSGSLANI 278 (438)
T ss_pred hhhHHHhcCchhcccCCCcCCCcceEEeCCHHHHHHHHHHHHHHHCCCcccCCCcchHhhHhhcCcceEEecChHHHHHH
Confidence 0 10 0 010 2333 334444322 11111 12345789999999999877665544
Q ss_pred HHcC-CCeeEE-ccC----CCc----eeeeeEEEEecCC--CCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcC
Q 044097 335 VKRM-SNVAVV-VPK----SGA----SLWADLWAIPAAS--RLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVI 402 (439)
Q Consensus 335 ~~~~-~~v~~~-vP~----eG~----~~~~~~~aI~k~a--~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~ 402 (439)
.+.. .++++. +|. .|. ..++..+.|++.. +|++ +|++||+|+++++.|..++.. .
T Consensus 279 ~~~~~~~~~v~~~P~~~~~~g~~~~~~~gg~~~~~~~~~~~~~~e------------aA~~fi~fl~s~e~~~~~~~~-~ 345 (438)
T PRK10974 279 RKYAKFNYGVGMMPYDADVKGAPQNAIIGGASLWVMQGKDKETYK------------GVAKFLDFLAKPENAAEWHQK-T 345 (438)
T ss_pred HhcCCceeeEEeeccCCCcCCCCCCCCCCCceEEEECCCCHHHHH------------HHHHHHHHHcCHHHHHHHHHh-c
Confidence 4321 234442 452 121 2233445555432 3456 999999999999999999864 4
Q ss_pred CCCCCCcc
Q 044097 403 PGASPSAL 410 (439)
Q Consensus 403 g~~~P~~~ 410 (439)
++ .|...
T Consensus 346 g~-lP~~~ 352 (438)
T PRK10974 346 GY-LPITT 352 (438)
T ss_pred CC-CCCCH
Confidence 44 66553
No 20
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=99.67 E-value=1e-15 Score=156.40 Aligned_cols=242 Identities=17% Similarity=0.208 Sum_probs=146.1
Q ss_pred ccHHHHHHHHhhc-CCeEEEEEeeeccc---------ccccceEec-CchhHHHHHHCCC-cccccccccchhhcccchh
Q 044097 147 VPQSWVKDFMRSQ-GKRLKFQMNLCASI---------DGIVNNLST-PFNKLSFAIKKRF-IEPIAEAEDQDWFKRLSHK 214 (439)
Q Consensus 147 ~~~~li~~Fek~~-GI~V~~~~~~~~s~---------~~~~~dv~~-~~~~~~~~i~~Gl-l~pl~~~~~~~~~~~i~~~ 214 (439)
..++++++|++++ ||+|+++....+.. .+..+||+. ...+...+...|. +.+|.... ......++.
T Consensus 47 ~~~~~i~~f~~~~p~ikv~~~~~~~~~~~~~l~~~~~ag~~PDv~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~~~~ 124 (433)
T COG1653 47 ALEELIKEFEKENPGIKVKVVNVPGDDYLQKLLTALASGDAPDVVQLDPEWLAAFAKAGGLLEDLTDLI--NPKLDLSDF 124 (433)
T ss_pred HHHHHHHHHHHhCCCeEEEEEecCcHHHHHHHHHHHhcCCCCCeEEeccchHHHHHhcccccchhhhhh--hcccChhhc
Confidence 4468999999997 79999983211100 111235554 3478888888877 77877641 000122222
Q ss_pred HHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCC-CCcccccCc--ccc--Cc--e--eeccC---hh
Q 044097 215 WKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPI-EDWKDPWWP--ELA--GR--I--SMVNS---PR 282 (439)
Q Consensus 215 ~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P-~TW~DL~dp--~lk--gk--I--~~~~~---~~ 282 (439)
.+..+.. ..+ ||++||+|+.....+++||+|+|+++|+++| +||+||... +++ ++ + .+... ..
T Consensus 125 ~~~~~~~---~~~--dG~~y~~P~~~~~~~~~ynkdlf~~aG~~~pp~tw~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (433)
T COG1653 125 PPALLDT---TTY--DGKLYGVPFNSSTPALFYNKDLFKKAGLKPPPKTWDELLAAAKKLKEKGGDVYGIAGGGGWQGED 199 (433)
T ss_pred CHHhHhh---eee--CCEEeeccccccCceEEEeHHHHHHhCCCCCCCCHHHHHHHHHHHHhhcCCccceeeccccccch
Confidence 2322321 223 4999999999999999999999999999886 999998653 222 22 2 22111 01
Q ss_pred HH--H-H----h-------CC-H-----H---HHHHHHHHHhhh--h----cccCchHHHH-HhhcCCeEEEEEccccHH
Q 044097 283 EV--I-V----A-------GG-K-----I---AVQQNLALLANQ--V----RLFDSTHYLK-AFGIGDVWVAVGWSSDVL 332 (439)
Q Consensus 283 ~~--~-~----~-------~G-~-----d---~~~e~L~~l~~~--v----~~~~~~~~~~-~f~~Ge~~~~i~ws~~~~ 332 (439)
.. + . . .| . . .+.+.+.++... . ......+..+ .|.+|+++|.+.+.....
T Consensus 200 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~~~~~ 279 (433)
T COG1653 200 LFFTFALFLGGAGGGFLDKDGGEAFLNDPEAVEALEFLKDLYKKGLLPKGASGYGWDDAGALAFGSGKVAMTIDGTWAIG 279 (433)
T ss_pred hHHHHHHHhhcCCCceecCCCceeccCCHHHHHHHHHHHHHHhcccccCCccccchhhhhhHHHhcCceeeEeeccchhc
Confidence 11 1 1 1 12 1 1 223334333322 1 1112235566 599999999998776665
Q ss_pred HHHHcCC---CeeEE-ccC--C-Cc---eeeeeEEEEecCCCC-cccccCCCCCCCHHHHHHHHHHHhcHHhhHH-HHhh
Q 044097 333 PAVKRMS---NVAVV-VPK--S-GA---SLWADLWAIPAASRL-ETKQIGGQVRGPSPLIHQWIEFCLQTARALP-FKQE 400 (439)
Q Consensus 333 ~~~~~~~---~v~~~-vP~--e-G~---~~~~~~~aI~k~a~~-~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~-~a~~ 400 (439)
.+..... ++++. +|. + +. ...+..++|++.+++ ++ +|++||+|++|+|.|.. +...
T Consensus 280 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------aA~~f~~~l~s~e~q~~~~~~~ 347 (433)
T COG1653 280 YFKKAAGPKFDIGVAPLPAGPGGGGAAGGVGGGGLGVSKKSKKHKE------------AAWKFLEFLTSPEAQAELLAKV 347 (433)
T ss_pred ccccccccccceeEEeCCCCCCCCCcceeeccceEEeecCCccchH------------HHHHHHHHhcCCchhhhhhhcc
Confidence 5444332 36653 564 1 22 234457899999988 55 99999999999999997 6543
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.+..|..
T Consensus 348 --~g~~P~~ 354 (433)
T COG1653 348 --TGGLPVR 354 (433)
T ss_pred --CCCcCcc
Confidence 3446654
No 21
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=99.63 E-value=1.9e-15 Score=147.54 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=135.0
Q ss_pred HHHH-HHHHhh-cCCeEEEEEe-----------eecccccccceEecCchhHHHHHHCCCcccccccccchhhcccchh-
Q 044097 149 QSWV-KDFMRS-QGKRLKFQMN-----------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHK- 214 (439)
Q Consensus 149 ~~li-~~Fek~-~GI~V~~~~~-----------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~- 214 (439)
++++ ++|+++ +||+|+++.. ...+++.-+|.+.....++..++++|+|+||++... .........
T Consensus 11 ~~~~~~~f~k~~~~i~V~~~~~~~~~~~~~~~~~~~sg~~p~Dv~~~~~~~~~~~~~~g~l~~L~~~~~-~~~~~~~~~~ 89 (315)
T PF01547_consen 11 QELIIEEFEKEHPGIKVEIEFIPWDDYQQKLNTALASGDAPYDVIFIDNDWLPQLAEAGLLMDLDDYLE-KYAPDWKKDF 89 (315)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEETHHHHHHHHHHHHHTTGSSESEEEEEGHHHHHHHHTTSBEHCHHHHH-HHTHHCCSHC
T ss_pred HHHHHHHHHHHCCCcEEEEEECCCccHHHHHHHHHHcCCChhheEEeccccchhhhhhhccCcCCHHHh-hccccccccc
Confidence 4556 999996 5999999732 112222212444456788999999999999998631 110111110
Q ss_pred ----HHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--C--c--eeec-cCh
Q 044097 215 ----WKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--G--R--ISMV-NSP 281 (439)
Q Consensus 215 ----~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--g--k--I~~~-~~~ 281 (439)
+..+... .++..+ +| +|+.. ..+++||+++|+++|+++|+||+||.+. +++ + . +.+. ...
T Consensus 90 ~~~~~~~~~~~----~~~~~~-~y-vP~~~-~~~~~ynkdl~~~~Gl~~p~Twde~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (315)
T PF01547_consen 90 ADNLISSFDPK----IFDSKG-IY-VPYSG-PNGLYYNKDLFEKAGLDPPWTWDEFLEAAKKIKEKGPDPYGIAFGGSDS 162 (315)
T ss_dssp HHCCHHHBCHH----HHHHEE-ES-EEEEE-EEEEEEETTTHHHTTSSSTSBHHHHHHHHHHHHHTTTCECEECCTEESH
T ss_pred cccchhhhhhh----eEecce-EE-EEeee-eeEEEEchhHHHHcCCCCCCCHHHHHHHHHHHHhcCCCCceEEeccCcc
Confidence 0000000 000014 89 99995 8999999999999999999999999875 332 1 1 1111 111
Q ss_pred hHH-------HHhCC------------HH---HHHHHHHHHh-------hh----hcccCchHHHHHhhcCCeEEEEEcc
Q 044097 282 REV-------IVAGG------------KI---AVQQNLALLA-------NQ----VRLFDSTHYLKAFGIGDVWVAVGWS 328 (439)
Q Consensus 282 ~~~-------~~~~G------------~d---~~~e~L~~l~-------~~----v~~~~~~~~~~~f~~Ge~~~~i~ws 328 (439)
... +...| .. ...+.+..+. .. ....+..+..+.|.+|+++|.+.++
T Consensus 163 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~ 242 (315)
T PF01547_consen 163 WDAYWFFQAFAWSFGGYWFDEDGKGFDDPEAVEALKYYKKLYYEKLWKKGYFPPDAVSSDWDQAQQAFASGKVAMIIDGS 242 (315)
T ss_dssp HHHHHHHHHHHHHTTHEEEEEETCESCSHHHHHHHHHHHHHHHHHHHHCHHTTTTETTSSHHHHHHHHHTTSEEEEEEEH
T ss_pred ccchHHHHHHHHhcCceeecCCccccCCHHHHHHHHHHHHHHHhhhhhhcccCCCccccCHHHHHHHHhCCCceEEEecc
Confidence 111 11122 01 1222232222 11 1112234566889999999999877
Q ss_pred ccH---------HHHH--H--cCCCeeEE-ccC--CCc--eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 044097 329 SDV---------LPAV--K--RMSNVAVV-VPK--SGA--SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQ 390 (439)
Q Consensus 329 ~~~---------~~~~--~--~~~~v~~~-vP~--eG~--~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS 390 (439)
+.+ .... . ...++.+. +|. .+. ......++|+++++|++ +|++||+||+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~~fl~~l~s 310 (315)
T PF01547_consen 243 WYALNWMKVEPQSAFNQNSPPVKFDWGFAPFPAGPGGGPPIGGGDGIAISKNSKNPE------------AAWKFLDFLTS 310 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTTEEEECEEBETTEETCSEEEEEEEEBTTSSTHH------------HHHHHHHHHTS
T ss_pred ccccccccccccccccccccccccccceeccCccCCCCCccccceEEEEECCCCCHH------------HHHHHHHHhCC
Confidence 652 1111 1 12356654 553 111 14667899999999999 99999999999
Q ss_pred HHhhH
Q 044097 391 TARAL 395 (439)
Q Consensus 391 ~e~q~ 395 (439)
+|.|.
T Consensus 311 ~e~Q~ 315 (315)
T PF01547_consen 311 PEGQK 315 (315)
T ss_dssp HHHHH
T ss_pred hhhCC
Confidence 99985
No 22
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=99.50 E-value=2.4e-12 Score=130.64 Aligned_cols=226 Identities=17% Similarity=0.216 Sum_probs=147.5
Q ss_pred cHHHHHHHHh----hc-CCeEEEEEeeeccc-------ccccceEec--CchhHHHHHHCCCcccccccccchhhcccch
Q 044097 148 PQSWVKDFMR----SQ-GKRLKFQMNLCASI-------DGIVNNLST--PFNKLSFAIKKRFIEPIAEAEDQDWFKRLSH 213 (439)
Q Consensus 148 ~~~li~~Fek----~~-GI~V~~~~~~~~s~-------~~~~~dv~~--~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~ 213 (439)
.+++...|++ ++ |++|++....-+|+ ++...||+. ...++..+.++|.+.+-+ +..
T Consensus 40 ~~~i~~~F~~~~~~~~~g~~v~i~~s~ggSg~~~~qi~~G~~ADV~~~A~~~~~d~l~~~g~li~~~----------~~~ 109 (338)
T PRK10852 40 FAALNPPFEQQWAKDNPGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKLIPAD----------WQS 109 (338)
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEEcCCCcHHHHHHHhcCCCcCEEecCCHHHHHHHHHCCCCCCcc----------hhh
Confidence 4678888886 54 99997652222222 233567764 356888888888543211 111
Q ss_pred hHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccC---hhHHH---H-
Q 044097 214 KWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNS---PREVI---V- 286 (439)
Q Consensus 214 ~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~---~~~~~---~- 286 (439)
.+ +++ +.|| +++++|+||++.-+ .|++|+||+++.+ +|.+.+. +...+ .
T Consensus 110 ~~-------------~~n---~~p~-~s~lV~vv~kgnpk-----~i~sw~DL~~~~~--kI~i~nP~tSg~g~~~~La~ 165 (338)
T PRK10852 110 RL-------------PNN---SSPF-YSTMAFLVRKGNPK-----NIHDWNDLVRSDV--KLIFPNPKTSGNARYTYLAA 165 (338)
T ss_pred cc-------------ccc---CCcc-cceEEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHH
Confidence 11 112 4776 78899999998654 4899999999865 5887653 22211 1
Q ss_pred ------hCCHH--HHHHHHHHHhhhhcccCch---HHHHHhhcCCeEEEEEccccHHHHHHc--CCCeeEEccCCCceee
Q 044097 287 ------AGGKI--AVQQNLALLANQVRLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLW 353 (439)
Q Consensus 287 ------~~G~d--~~~e~L~~l~~~v~~~~~~---~~~~~f~~Ge~~~~i~ws~~~~~~~~~--~~~v~~~vP~eG~~~~ 353 (439)
..|.+ .+++++.++..++..+... .....+.+|++.+++.|..++....++ ..++.+++|+++....
T Consensus 166 ~~~~~~~~G~d~~~a~~~l~~l~~Nv~v~~~~~~~a~~~~v~~Ge~Dvgi~yesda~~~~~~~~~~~~~iV~P~~~~~~~ 245 (338)
T PRK10852 166 WGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFESEVNNIRKQYEAQGYEVVVPKTNILAE 245 (338)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHhcCCEecCCCcHHHHHHHHcCCccEEEEechHHHHHHHhcCCCCeEEEeCCCCceee
Confidence 12433 3678888998888766432 345567889999999998887655443 3567888997766443
Q ss_pred eeEEEEe-cC---CCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCCCC
Q 044097 354 ADLWAIP-AA---SRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSV 428 (439)
Q Consensus 354 ~~~~aI~-k~---a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~~~ 428 (439)
. ..+|. +. ++|++ +|++|++||+|+|.|..|++ .|| .|.. ..++++.....|.+
T Consensus 246 ~-pvAvv~k~~~~~~~~e------------~AkaFidfL~S~eaQ~i~ak--~gf-~p~~-----~~~~~~~~~~~~~~ 303 (338)
T PRK10852 246 F-PVAWVDKNVQANGTEK------------AAKAYLNYLYSPQAQTIITD--FYY-RVNN-----PEVMDKLKDKFPQT 303 (338)
T ss_pred e-eEEEEEeccccCCCHH------------HHHHHHHHhcCHHHHHHHHH--cCC-CCCC-----hhhhHHHHhhCCCC
Confidence 3 56655 44 45566 99999999999999999985 344 5653 34566666666644
No 23
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein. The model describes the molybdate ABC transporter periplasmic binding protein in bacteria and archae. Several of the periplasmic receptors constitute a diverse class of binding proteins that differ widely in size, sequence and ligand specificity. It has been shown experimentally by radioactive labeling that ModA represent hydrophylioc periplasmic-binding protein in gram-negative organisms and its counterpart in gram-positive organisms is a lipoprotein. The other components of the system include the ModB, an integral membrane protein and ModC the ATP-binding subunit. Invariably almost all of them display a common beta/alpha folding motif and have similar tertiary structures consisting of two globular domains.
Probab=99.49 E-value=3.7e-13 Score=127.09 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=126.4
Q ss_pred HHHHHHHHhhcCCeEEEEEeeecccc--------cccceEecC--chhHHHHHHCCCcccccccccchhhcccchhHHHh
Q 044097 149 QSWVKDFMRSQGKRLKFQMNLCASID--------GIVNNLSTP--FNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVY 218 (439)
Q Consensus 149 ~~li~~Fek~~GI~V~~~~~~~~s~~--------~~~~dv~~~--~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~~~~ 218 (439)
+++++.|++++||+|+++ +++.. ....||+.+ ...+..+.+.|++.++...
T Consensus 9 ~~~~~~f~~~~gi~V~~~---~~gs~~l~~~l~~~~~aDv~~~~~~~~~~~l~~~g~~~~~~~~---------------- 69 (216)
T TIGR01256 9 KEIAKQFEKRTGNKVVFS---FGSSGTLYTQIENGAPADLFISADNKWPKKLVDKGLVVAGSRF---------------- 69 (216)
T ss_pred HHHHHHHHHhhCCeEEEE---eCChHHHHHHHHcCCCCcEEEECCHHHHHHHHHCCCCCCCchh----------------
Confidence 679999999999999986 22211 112344432 2345666667766554321
Q ss_pred hhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccc-cCceeeccChhHHHHhCCH--HHHHH
Q 044097 219 LRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPEL-AGRISMVNSPREVIVAGGK--IAVQQ 295 (439)
Q Consensus 219 l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~l-kgkI~~~~~~~~~~~~~G~--d~~~e 295 (439)
.+..+..+++||++ . .|++|+||. +.+ +++|++.++.......... -....
T Consensus 70 ------------------~~~~~~~~l~~~~~---~----~~~s~~dL~-~~~~~~~i~~~~P~~~~~g~~~~~~~~~~g 123 (216)
T TIGR01256 70 ------------------TYAGNKLVLISPKN---R----VVDDLDILK-KWVADKRVAIGDPKHAPYGAAAKEVLQKLG 123 (216)
T ss_pred ------------------eEEccEEEEEEECC---C----CcCcHHHHh-hcccCCeEEecCCCcCcChHHHHHHHHHCC
Confidence 02345678899987 1 589999997 655 6899987633211100000 00112
Q ss_pred HHHHHhhhhcccCc-hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCC
Q 044097 296 NLALLANQVRLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQV 374 (439)
Q Consensus 296 ~L~~l~~~v~~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~ 374 (439)
.+..+++++....+ .+..+.+.+|++.+++.|.+++.... +....+.+|+++......+++|+++++|++
T Consensus 124 ~~~~l~~n~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~--~~~~~~~~P~~~~~~~~~~~ai~k~a~~~~------- 194 (216)
T TIGR01256 124 LWETLKKKLVYGEDVRQALQFVETGNAPAGIVALSDVIPSK--KVGSVATFPEDLYKPIRYPAVIVKGGKNNA------- 194 (216)
T ss_pred ChhhhhhheeecCcHHHHHHHHHcCCCCEEeeehhhhcccC--CccEEEEeCccccCCccccEEEEECCCChH-------
Confidence 34456666533222 35678899999999999987765432 223446789887766677899999999999
Q ss_pred CCCHHHHHHHHHHHhcHHhhHHHHh
Q 044097 375 RGPSPLIHQWIEFCLQTARALPFKQ 399 (439)
Q Consensus 375 ~~~~~aA~~FI~fllS~e~q~~~a~ 399 (439)
+|++||+||+|+|.|..|.+
T Consensus 195 -----~A~~fi~fl~s~e~q~~~~~ 214 (216)
T TIGR01256 195 -----AAKAFIDYLKSPEAKEILRK 214 (216)
T ss_pred -----HHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999998874
No 24
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=99.37 E-value=5.9e-12 Score=124.55 Aligned_cols=241 Identities=15% Similarity=0.154 Sum_probs=160.7
Q ss_pred HhhcCCeEEEEEee-----------e-cccc--cccceEecCchhHHHHHHCCCcccccccccchhhcccchhHHHhhhc
Q 044097 156 MRSQGKRLKFQMNL-----------C-ASID--GIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRS 221 (439)
Q Consensus 156 ek~~GI~V~~~~~~-----------~-~s~~--~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~~~~l~~ 221 (439)
+.+|||+|.+.... . ++.+ +..+.+.+....+..+..+|+|... -.++++++...+..++ +.
T Consensus 59 ~~kYgi~v~~~~l~~~~a~~~~~a~~AAG~~e~g~VDl~~~~g~n~p~lk~~~~L~~~-~~~~LPnwr~~d~ql~---~t 134 (384)
T COG4134 59 KAKYGIKVAIVRLDAADAVKRLIAELAAGRDEGGSVDLLWINGENFPTLKEAGLLYTP-WAEDLPNWRYVDHQLP---RT 134 (384)
T ss_pred hcccceEEEeecccHHHHHHHHHHHHhcccccCCceEEEEecCccchhhhhccccccc-hhhhCccchhhchhcc---cc
Confidence 55589999986110 0 1111 1245555677888999999998765 2222334444443332 11
Q ss_pred CCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC--ccccCceeeccChh----HHHH-----hC--
Q 044097 222 NDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--PELAGRISMVNSPR----EVIV-----AG-- 288 (439)
Q Consensus 222 ~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lkgkI~~~~~~~----~~~~-----~~-- 288 (439)
. ..+..+| +.+||..+..+|+|+++..++ +|+|.+||+. .+..+|++....+. ..|. .+
T Consensus 135 d--f~~pt~G--l~~~~~~~q~~f~yd~~k~~~----~P~s~eeLL~wA~aNP~rf~Y~~P~~gg~G~~Fl~~~~i~Lt~ 206 (384)
T COG4134 135 D--FSVPTEG--LESPWGGNQLVFIYDRDKVPQ----VPQSFEELLVWAKANPKRFGYPRPPNGGTGTAFLKQLLIMLTG 206 (384)
T ss_pred c--cCCCCCc--ccccccCCcceEEEccccCCC----CCcCHHHHHHHHHhCcCccccCCCCCCCccHhHHHHHHHHhcC
Confidence 1 1233346 789999999999999887775 8999999975 35567777654332 2221 11
Q ss_pred ----------------CHHHHHHHHHHHhhhhcccC--chHHHHHhhcCCeEEEEEccccHHHHHHcC---CCeeEEccC
Q 044097 289 ----------------GKIAVQQNLALLANQVRLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRM---SNVAVVVPK 347 (439)
Q Consensus 289 ----------------G~d~~~e~L~~l~~~v~~~~--~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~---~~v~~~vP~ 347 (439)
+++..+++|.+|.+++-... ..++.+.+..|+..|.+.|...++..+..+ +.+.+..++
T Consensus 207 d~~~l~~avDpat~~k~~~p~WqYl~~L~~~i~r~~kg~Adml~lL~dG~l~l~~t~~~~~~s~~~tG~lp~s~~~~~~~ 286 (384)
T COG4134 207 DAAALQQAVDPATFAKVWAPLWQYLDELHPYIWRTGKGPADMLQLLNDGTLYLTLTFPDHASSAIATGDLPASARSFALE 286 (384)
T ss_pred chHhhcCCCChHHHHhhccHHHHHHHHhhhhhhhcCCCHHHHHHHhcCCcEEEeecchhhhhcchhccCCchHhhhhhhc
Confidence 22457788888888753332 357889999999999999977776655544 245566777
Q ss_pred CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhc
Q 044097 348 SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLK 423 (439)
Q Consensus 348 eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~ 423 (439)
.|....++.++||+++.+++ +|..||+|++|+|.|..=....+ ...|+..+ ...+|+..++
T Consensus 287 ~G~vgn~~f~aIPaNa~~~A------------~alvl~n~lls~EaQlrk~d~~v-~~~P~~l~--pq~lpda~qe 347 (384)
T COG4134 287 KGMVGNGHFMAIPANANAKA------------AALVLANFLLSPEAQLRKLDPAV-WGDPSVLD--PQLLPDAQQE 347 (384)
T ss_pred cccccCcceEEecCCCCCch------------HHHHHHHHhcCHHHHHhhhcccc-cCCccccC--cccChhhHhh
Confidence 88888889999999999999 99999999999999954333333 44776533 3445665555
No 25
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=99.37 E-value=4.7e-11 Score=120.28 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=141.0
Q ss_pred eEEEEeCCC--CccHHHHHHHHh----hcCCeEEEEEeeeccc-------ccccceEec--CchhHHHHHHCCCcccccc
Q 044097 137 PLRVVSLQN--SVPQSWVKDFMR----SQGKRLKFQMNLCASI-------DGIVNNLST--PFNKLSFAIKKRFIEPIAE 201 (439)
Q Consensus 137 ~L~v~~w~~--~~~~~li~~Fek----~~GI~V~~~~~~~~s~-------~~~~~dv~~--~~~~~~~~i~~Gll~pl~~ 201 (439)
+|...++.- ...+++.+.|++ ++|++|+++..+-+++ ++...||+. ...|+..+.++|++.+=..
T Consensus 12 ~~~~~~~~~~~~~~~~i~~~fe~~~~~~~g~~v~v~~~~g~Sg~l~~Qi~~Ga~~Dvf~sa~~~~~~~l~~~g~i~~~~~ 91 (315)
T TIGR00971 12 QLLNVSYDPTRELYEQYNKAFEAHWKQDTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKDWI 91 (315)
T ss_pred EEEeecccccHHHHHHHHHHHHHHHHhcCCCceEEEEecCCcHHHHHHHHcCCCcCEEecCCHHHHHHHHHCCCCCcchh
Confidence 444444432 234679999999 4799976542122222 122346654 3568888888887653110
Q ss_pred cccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccCh
Q 044097 202 AEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSP 281 (439)
Q Consensus 202 ~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~ 281 (439)
..+ . . + ++||. +..+|+|+++..+ .|++|+||+++.+ +|++.+..
T Consensus 92 -----------~~~---~--------~--n---~~~~~-~~lvl~v~k~~~~-----~i~sw~dL~~~~~--kiai~dp~ 136 (315)
T TIGR00971 92 -----------KRL---P--------D--N---SAPYT-STIVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPNPK 136 (315)
T ss_pred -----------hhC---c--------c--C---CCccc-eeEEEEEeCCCCC-----CCCCHHHHhCCCc--EEEeCChh
Confidence 000 0 0 1 35665 5899999988653 4789999998865 47765422
Q ss_pred hH-H--H---Hh--------CC-HHHHHHHHHHHhhhhcccCch---HHHHHhhcCCeEEEEEccccHHHHHHc--CCCe
Q 044097 282 RE-V--I---VA--------GG-KIAVQQNLALLANQVRLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNV 341 (439)
Q Consensus 282 ~~-~--~---~~--------~G-~d~~~e~L~~l~~~v~~~~~~---~~~~~f~~Ge~~~~i~ws~~~~~~~~~--~~~v 341 (439)
.. . + .. .| .+.++++|..+.+++..+..+ .....+.+|++.+++.|.+++...... +.++
T Consensus 137 ~sg~~~~~~L~~~g~~~~~~~g~~~~a~~~l~~l~~nv~~~~~~~~~~~~~~v~~Ge~dagivy~sda~~~~~~~~~~~i 216 (315)
T TIGR00971 137 SSGGARWNYLAAWGYALHHNNGDQAKAQQFVTALLKNVEVLDSGARGATNTFVERGIGDVLIAWENEALLARKELGKDKF 216 (315)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHhhccccCCCchHHHHHHHHcCceeEEEEEcHHHHHHHHhcCCCCe
Confidence 11 1 1 11 11 245678888888888766433 344567799999999999887654443 3578
Q ss_pred eEEccCCCceeeeeEEEEec----CCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 342 AVVVPKSGASLWADLWAIPA----ASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 342 ~~~vP~eG~~~~~~~~aI~k----~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
.+++|+++..... ..++.+ .+++++ +|++|++||+|+|.|..|.+ .|+ .|..
T Consensus 217 ~iviP~e~~~i~~-~iavv~~~~~~~~~~e------------~A~~FidfLlS~eaq~i~ak--~gf-~p~~ 272 (315)
T TIGR00971 217 EIVTPSESILAEP-TVSVVDKVVEKKGTKK------------VAEAYLKYLYSPEGQEIAAK--NYY-RPRD 272 (315)
T ss_pred EEEECCCCccccc-cEEEEEcccCCCCCHH------------HHHHHHHHhcCHHHHHHHHH--cCC-eeCC
Confidence 8999988655444 355554 345666 99999999999999999975 344 4543
No 26
>PRK10752 sulfate transporter subunit; Provisional
Probab=99.36 E-value=4.3e-11 Score=121.18 Aligned_cols=211 Identities=16% Similarity=0.198 Sum_probs=135.4
Q ss_pred HHHHHHHH----hhcCCeEEEEEeeeccc-------ccccceEec--CchhHHHHHHCCCcccccccccchhhcccchhH
Q 044097 149 QSWVKDFM----RSQGKRLKFQMNLCASI-------DGIVNNLST--PFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKW 215 (439)
Q Consensus 149 ~~li~~Fe----k~~GI~V~~~~~~~~s~-------~~~~~dv~~--~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~ 215 (439)
+++.+.|+ +++|++|++...+-+++ .+...||+. ...++..+.++|++.+-. ...+.
T Consensus 37 ~~~~~~f~~~~~~~tG~~V~v~~s~ggSg~l~~qI~~g~~aDV~~~a~~~~~~~l~~~gli~~~~-------~~~l~--- 106 (329)
T PRK10752 37 EQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKNW-------IKRLP--- 106 (329)
T ss_pred HHHHHHHHHHHHhccCCceEEEeCCCChHHHHHHHHcCCCCCEEEeCCHHHHHHHHHCCCCCCcc-------hhhhh---
Confidence 45666665 45699999863222222 123456654 346888899999987511 11111
Q ss_pred HHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhH------HH---H
Q 044097 216 KVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPRE------VI---V 286 (439)
Q Consensus 216 ~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~------~~---~ 286 (439)
+ +.. | .++..+++++++--+ .|++|+||+++.+ +|+|.+.... .+ .
T Consensus 107 ------------~-n~~----~-~~~~lviiv~~gnp~-----~i~~w~DL~~~~~--~I~i~dP~tSGta~~~~laa~~ 161 (329)
T PRK10752 107 ------------D-NSA----P-YTSTIVFLVRKGNPK-----QIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAWG 161 (329)
T ss_pred ------------c-ccc----c-cceeEEEEEECCCCC-----CCCCHHHhcCCCc--EEEECCCCcchHHHHHHHHHHH
Confidence 1 111 2 356678888887543 4799999999865 6877653211 11 1
Q ss_pred -----hCC-HHHHHHHHHHHhhhhcccCch--H-HHHHhhcCCeEEEEEccccHHHHHHc--CCCeeEEccCCCceeeee
Q 044097 287 -----AGG-KIAVQQNLALLANQVRLFDST--H-YLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWAD 355 (439)
Q Consensus 287 -----~~G-~d~~~e~L~~l~~~v~~~~~~--~-~~~~f~~Ge~~~~i~ws~~~~~~~~~--~~~v~~~vP~eG~~~~~~ 355 (439)
.+| .+++++++.+|.+|+..+... . ....+..|+..+.++|...+....++ +.++++++|++|..+...
T Consensus 162 ~~l~~~~g~~~~a~~~l~kL~~Nv~~~~~~~~~a~~~~v~~g~gdv~I~~e~~a~~~~~~~~g~~veiV~P~~g~~~~~~ 241 (329)
T PRK10752 162 YALHHNNNDQAKAQDFVKALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPT 241 (329)
T ss_pred HHHhccCCCHHHHHHHHHHHHhcCCcccCCCcchhhHHHHcCeeeEEEEechHHHHHHHHhCCCCEEEEECCCCccccce
Confidence 123 246889999999998655322 2 23345678888888898877655443 578999999987443332
Q ss_pred EE---EEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 356 LW---AIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 356 ~~---aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
.. .+.++++|++ +|++|++||+|+|+|..+++. +..|..
T Consensus 242 va~v~~~~k~~~~~e------------~Ak~FidfllS~eaQ~i~a~~---g~~P~~ 283 (329)
T PRK10752 242 VSVVDKVVDKKGTRE------------VAEAYLKYLYSPEGQEIAAKN---YYRPRD 283 (329)
T ss_pred eEEEEeccccCCCHH------------HHHHHHHHhcCHHHHHHHHHc---CcccCC
Confidence 21 2245678888 999999999999999999752 446754
No 27
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=99.30 E-value=2.3e-10 Score=111.98 Aligned_cols=203 Identities=14% Similarity=0.164 Sum_probs=122.7
Q ss_pred eEEEEeCCCC--ccHHHHHHHHhhcCCeEEEEEeeecccc-------cccceEecC--chhHHHHHHCCCcccccccccc
Q 044097 137 PLRVVSLQNS--VPQSWVKDFMRSQGKRLKFQMNLCASID-------GIVNNLSTP--FNKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 137 ~L~v~~w~~~--~~~~li~~Fek~~GI~V~~~~~~~~s~~-------~~~~dv~~~--~~~~~~~i~~Gll~pl~~~~~~ 205 (439)
+|+|+...+. ..+++++.|++++|++|++. +-+++. +...||..+ ..++..+.++|++.+.
T Consensus 28 ~l~v~~a~~~~~~~~~l~~~Fe~~~g~~v~~~--~~~Sg~l~~qi~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~------ 99 (257)
T PRK10677 28 KITVFAAASLTNALQDIAAQYKKEKGVDVVSS--FASSSTLARQIEQGAPADLFISADQKWMDYAVDKKAIDTA------ 99 (257)
T ss_pred cEEEEEecChHHHHHHHHHHHHhhhCCeEEEE--ecccHHHHHHHHcCCCCCEEEECCHHHHHHHHHCCCCCCc------
Confidence 3667766552 45789999999999999987 212210 111233221 2334444444443211
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcc-cccCCCCCCCCcccccCccccCceeeccChhHH
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSK-FQNHNLAPIEDWKDPWWPELAGRISMVNSPREV 284 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~-~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~ 284 (439)
. + .++..+..+|+|+++- .+..++.+|++|+||++ .++|++.++....
T Consensus 100 -------------------------~--~-~~~a~n~lvl~~~~~~~~~~i~~~~~~~~~dLl~---~~~iai~dP~~~p 148 (257)
T PRK10677 100 -------------------------T--R-YTLLGNSLVVVAPKASEQKDFTIDKKTDWKSLLN---GGRLAVGDPDHVP 148 (257)
T ss_pred -------------------------c--h-heeecCEEEEEEECCCccccccccCccCHHHhcC---CCeEEEcCCCCCh
Confidence 0 1 2356778899999974 33333446889999976 3678887632111
Q ss_pred H--------HhCC-HHHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeee
Q 044097 285 I--------VAGG-KIAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWAD 355 (439)
Q Consensus 285 ~--------~~~G-~d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~ 355 (439)
+ ...| ++...+.+ .+. -.-.+....+.+|++.+++.|.++... .++.++...+|+++......
T Consensus 149 ~G~~a~~~l~~~g~~~~l~~k~----~~~--~~v~~~~~~v~~G~ad~gi~~~s~a~~--~~~~~~~~~~P~e~~~~i~~ 220 (257)
T PRK10677 149 AGIYAKEALQKLGAWDTLSPKL----ARA--EDVRGALALVERNEAPLGIVYGSDAVA--SKKVKVVGTFPEDSHKPVEY 220 (257)
T ss_pred HHHHHHHHHHHcCCHHHHHhhh----ccc--ccHHHHHHHHHcCCCCEEEEEeeeeec--cCCCeEEEECCcccCCccee
Confidence 1 1122 22222111 000 011245678899999999988776532 22334444579887665666
Q ss_pred EEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHh
Q 044097 356 LWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQ 399 (439)
Q Consensus 356 ~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~ 399 (439)
..+|.++++| + +|++|++||+|+|.|..|.+
T Consensus 221 ~~avlk~~~~-~------------~Ak~Fi~fl~S~eaq~i~~~ 251 (257)
T PRK10677 221 PMAIVKGHNN-A------------TVKAFYDYLKGPQAAAIFKR 251 (257)
T ss_pred eEEEEcCCCC-H------------HHHHHHHHHcCHHHHHHHHH
Confidence 7889998875 5 79999999999999999864
No 28
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=99.27 E-value=1.3e-10 Score=110.69 Aligned_cols=203 Identities=18% Similarity=0.243 Sum_probs=129.6
Q ss_pred EEEEeCCCC--ccHHHHHHHHhhcCCeEEEEEeeecccc--------cccceEecC-chhHHHHHHCCCcccccccccch
Q 044097 138 LRVVSLQNS--VPQSWVKDFMRSQGKRLKFQMNLCASID--------GIVNNLSTP-FNKLSFAIKKRFIEPIAEAEDQD 206 (439)
Q Consensus 138 L~v~~w~~~--~~~~li~~Fek~~GI~V~~~~~~~~s~~--------~~~~dv~~~-~~~~~~~i~~Gll~pl~~~~~~~ 206 (439)
|+|+.-.+. ..++++++|++++||+|+++ ...+.+ ..+|.++.. ..++..+.++|++.+
T Consensus 1 L~V~~~~~~~~~~~~l~~~f~~~~g~~v~v~--~~~s~~~~~~l~~g~~~Dv~~~~~~~~~~~l~~~g~~~~-------- 70 (230)
T PF13531_consen 1 LTVYAASGLAPALEELAEAFEKQPGIKVEVS--FGGSGELVRRLQAGKKPDVFIPASSEWLERLAAAGLVDP-------- 70 (230)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHCEEEEEE--EECHHHHHHHHHTT-S-SEEEESSHHHHHHHHHTTTCSG--------
T ss_pred CEEEEcccHHHHHHHHHHHHHhccCCeEEEE--ECChHHHHHHHhcCCCceEEEECCHHHHHHHHhcccccC--------
Confidence 345443332 34689999988889999987 222211 112222222 234444444444432
Q ss_pred hhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHH-
Q 044097 207 WFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI- 285 (439)
Q Consensus 207 ~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~- 285 (439)
+ ...|+..+.++|+|+++.- ..+.+|+||.++.+ +|++.+......
T Consensus 71 ------------------------~--~~~~~~~~~~vl~~~~~~~-----~~~~~~~dL~~~~~--~i~~~dP~~s~~g 117 (230)
T PF13531_consen 71 ------------------------G--SPAPLARSPLVLAVPKGNP-----KGIRSWADLAQPGL--RIAIPDPSTSPSG 117 (230)
T ss_dssp ------------------------G--GEEEEEEEEEEEEEETTST-----TSTTCHHHHCSTT----EEEE-TTTTHHH
T ss_pred ------------------------C--cccccccCceEEEeccCcc-----cccCCHHHHhhccC--EEEecCcccChhh
Confidence 1 2467778889999999982 25799999999877 788876432211
Q ss_pred -------HhCCHHHHHHHHHHHhhhhccc-Cc-hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCcee--ee
Q 044097 286 -------VAGGKIAVQQNLALLANQVRLF-DS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASL--WA 354 (439)
Q Consensus 286 -------~~~G~d~~~e~L~~l~~~v~~~-~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~--~~ 354 (439)
...|. .+++..+..+...+ .+ .+....+.+|++.+++.|...+... ....++.++.|.++... ..
T Consensus 118 ~~~~~~l~~~g~---~~~~~~l~~~~~~~~~~~~~~~~~v~~g~~d~~~~~~s~~~~~-~~~~~~~~v~~~~~~~~~~~~ 193 (230)
T PF13531_consen 118 LAALQVLAAAGG---QELLDALQKNIVQYVPSTSQVLSAVASGEADAGIVYESQAIFA-RQGDPLSYVYPPDGVNSPPID 193 (230)
T ss_dssp HHHHHHHHHHTH---CHHHHHHHHTEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHC-TSHTTEEEEE-STTTSSSEEE
T ss_pred HHHHHHHHHccc---HHHHHHHHHhCcccccchHHHHHHHHcCCCcceeeHHHHHHHh-hcCCCeEEEECCchhcCCCEE
Confidence 11122 34566676665433 22 4567789999999999888766432 33467887766555443 44
Q ss_pred eEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHh
Q 044097 355 DLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQ 399 (439)
Q Consensus 355 ~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~ 399 (439)
...+|.++++|++ +|.+|++||+|++.|..|.+
T Consensus 194 ~~~~~~~~~~~~~------------~a~~f~~~L~s~~~q~~l~~ 226 (230)
T PF13531_consen 194 YPIAILKNAPHPE------------AARAFIDFLLSPEGQQILAK 226 (230)
T ss_dssp EEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHHH
T ss_pred EEEEEecCCCCHH------------HHHHHHHHHCCHHHHHHHHH
Confidence 5789999999998 99999999999999999875
No 29
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional
Probab=99.24 E-value=6.9e-10 Score=112.70 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=65.8
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHcCCCeeE-EccCC--------------------------CceeeeeEEEEecCC
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPKS--------------------------GASLWADLWAIPAAS 363 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~-~vP~e--------------------------G~~~~~~~~aI~k~a 363 (439)
+....+.+|++.+++.|.+++.. ..+.+ .+|.+ ........++|.+++
T Consensus 213 ~~~~~v~~G~aDagivy~S~a~~-----~~~~~i~lP~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~pi~y~~ai~~~s 287 (334)
T PRK04168 213 ELLSLLETGNMDYAFIYKSVAVQ-----HNLKYIELPDEINLGNYKYADFYKKVSVTVTGTGKTITAKPIVYGITVPKNA 287 (334)
T ss_pred hhHHHHhcCCccEEEEEeeehhh-----CCCCeeECchhhcCCChhhhhhhhEEEEEecCCCccccCceeeeeeeeecCC
Confidence 56678899999999999887653 12222 24431 111244578999999
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCC--CCcccccccCCCHHHhc
Q 044097 364 RLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS--PSALESTLVKLPEELLK 423 (439)
Q Consensus 364 ~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~--P~~~~~~~~~lp~el~~ 423 (439)
+|++ +|++|++|++|+|.|..|.+ .|+.+ |... ...||++++.
T Consensus 288 ~n~e------------~A~~Fi~fl~S~e~q~il~~--~Gf~~~~P~~~---~~~~p~~l~~ 332 (334)
T PRK04168 288 PNRE------------AAIEFLKYLLSEPGGEVLEN--NGQPPIVPAIA---FGNVPEELKD 332 (334)
T ss_pred CCHH------------HHHHHHHHHcCHHHHHHHHH--cCCCCCCCccc---cCCCCHHHhh
Confidence 9998 99999999999999999975 46645 5443 3668998864
No 30
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=5.5e-09 Score=102.16 Aligned_cols=229 Identities=18% Similarity=0.267 Sum_probs=142.6
Q ss_pred HHHHHHH----HhhcCCeEEEEEeeeccc-------ccccceEec--CchhHHHHHHCC-Ccccccccccchhhcccchh
Q 044097 149 QSWVKDF----MRSQGKRLKFQMNLCASI-------DGIVNNLST--PFNKLSFAIKKR-FIEPIAEAEDQDWFKRLSHK 214 (439)
Q Consensus 149 ~~li~~F----ek~~GI~V~~~~~~~~s~-------~~~~~dv~~--~~~~~~~~i~~G-ll~pl~~~~~~~~~~~i~~~ 214 (439)
+++...| .+++|-+|.++...-+|+ +++.+||+. -..++..+.+.| ++. ++|..+
T Consensus 53 ~~~n~aF~~~WkaetG~~Vti~qShGGSgkQaRsViDGl~ADVVtlal~~Did~i~~~g~li~-----------~dW~~r 121 (348)
T COG1613 53 KEYNPAFAKYWKAETGETVTIQQSHGGSGKQARSVIDGLEADVVTLALAYDIDAIAKAGGLID-----------KDWQKR 121 (348)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCCCcchhhHhhccCcccceeeeehhhhHHHHHHhcCCCC-----------cchHhh
Confidence 4555555 456788888873322222 234456553 245677777766 543 233333
Q ss_pred HHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccC-----hhHHH----
Q 044097 215 WKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNS-----PREVI---- 285 (439)
Q Consensus 215 ~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~-----~~~~~---- 285 (439)
+ |++ ++|| .++.++..||.--+. +++|.||.++..+ +...++ .+.-|
T Consensus 122 l-------------p~n---s~Py-tStivFlVRkGNPK~-----I~DW~DL~k~gV~--VItpNPKTSGgARWN~Laaw 177 (348)
T COG1613 122 L-------------PNN---SAPY-TSTIVFLVRKGNPKQ-----IRDWDDLVKPGVQ--VITPNPKTSGGARWNYLAAW 177 (348)
T ss_pred C-------------cCC---CCCc-cceEEEEEecCCccc-----cCchHHhccCCcE--EEcCCCCCCcchhHHHHHHH
Confidence 2 234 4777 678899999987664 7999999987543 222221 12212
Q ss_pred H-----hCCHH-HHHHHHHHHhhhhcccCch--HHHHHhhc-CCeEEEEEccccHHHHHHc--CCCeeEEccCCCceeee
Q 044097 286 V-----AGGKI-AVQQNLALLANQVRLFDST--HYLKAFGI-GDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWA 354 (439)
Q Consensus 286 ~-----~~G~d-~~~e~L~~l~~~v~~~~~~--~~~~~f~~-Ge~~~~i~ws~~~~~~~~~--~~~v~~~vP~eG~~~~~ 354 (439)
. .+|.+ .+.+++.+|..++...++. +....|.+ |...+.+.|...++.+.++ +.++++++|. ..+.+
T Consensus 178 a~a~~~~~gdeaka~~fV~~L~~nvpvld~gaRgAT~tF~qrgiGDVLi~wENEA~la~~e~g~~~feiV~Ps--~si~a 255 (348)
T COG1613 178 AYALKTNGGDEAKAKDFVGKLYKNVPVLDTGARGATTTFVQRGIGDVLIAWENEALLALNELGGDKFEIVTPS--VSILA 255 (348)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCccccCCcchhhHHHHhcCcccEEEEechHHHHHHHHhCCCCccEECCc--eeeee
Confidence 1 13333 3788999999998777653 45566654 7778888999998776433 4689999996 22222
Q ss_pred -eEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCCCCCc
Q 044097 355 -DLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSVDT 430 (439)
Q Consensus 355 -~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~~~~~ 430 (439)
..+++..+.-+ ++|....|..|++||.|+|.|..+++. |..|.. +++-......+|.++.
T Consensus 256 EpPVAVVd~~vd--------kkgtr~vAeAyl~yLys~~gQ~i~Ak~---~yRP~~-----p~v~a~~~~~FP~v~l 316 (348)
T COG1613 256 EPPVAVVDKNVD--------KKGTRKVAEAYLKYLYSPEGQEIAAKH---YYRPRD-----PEVAAKFADQFPKLKL 316 (348)
T ss_pred cCCeEEEeeecc--------ccccHHHHHHHHHHhcChHHHHHHHHh---CCCCCC-----HHHHHHHHhhCCCcce
Confidence 23555544433 346777999999999999999999974 447764 2333444445665543
No 31
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family)
Probab=98.85 E-value=2.7e-08 Score=103.79 Aligned_cols=236 Identities=16% Similarity=0.210 Sum_probs=137.6
Q ss_pred eEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeecccc--------cccceEecCchhHHHHHHCCCcccccccccchh-
Q 044097 137 PLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASID--------GIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDW- 207 (439)
Q Consensus 137 ~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s~~--------~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~- 207 (439)
.|+|+.|++|+.+.+.+.|++.+|++.. .+++.+ ..|+..+++...+.+++++|+|++|+-.++--+
T Consensus 27 ~lviaN~~~YIsP~~~e~~~~~~~~~y~----tf~sne~l~~kf~~~~YDvaVpS~y~vakl~~~~~l~kIDwsKfnl~~ 102 (493)
T PF02030_consen 27 NLVIANYESYISPLLLEQFEKKTGVKYR----TFDSNEILYNKFKTGTYDVAVPSDYMVAKLASENLLQKIDWSKFNLKK 102 (493)
T ss_pred CEEEEchhhhcCHHHHHHHhhccCeeEE----EeCchHHHHHHhccCceeEEeccHHHHHHHHHcCCcccccHHHhcccc
Confidence 5789999999998444445555684444 344433 235455567788999999999999997653100
Q ss_pred ------h----cccchhHHHhhhcCCCcccC-CCCCE--EEeeeecceEEEEEeCcccccCCCCCCCCcccccCcc----
Q 044097 208 ------F----KRLSHKWKVYLRSNDAGEID-PRGKI--WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPE---- 270 (439)
Q Consensus 208 ------~----~~i~~~~~~~l~~~~~~~~D-~dGk~--YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~---- 270 (439)
. .+..+.+...+........| ..+.+ |||||.++-.+|+||....+... .---+|.+++...
T Consensus 103 ~~~~~~~i~~~~~~~~lFt~~v~~i~~~~~d~k~~~LldY~IPYF~QDLvfaY~~eki~~L~-~~~v~w~~l~k~i~~~~ 181 (493)
T PF02030_consen 103 ENNSTNTINNANDAKKLFTDEVFEILASYTDLKNNSLLDYGIPYFWQDLVFAYNGEKIKNLK-NEDVSWSDLIKEINNHK 181 (493)
T ss_pred ccCccccccCchhHHHhhhHHHHHHHHHhhhcccchhhhhcccceeeeeEEEEcccccchhh-hcCCcHHHHHHHHhhCc
Confidence 0 00011111000000000011 11222 89999999999999988777642 2346899987641
Q ss_pred --c-cCceeeccChhHHHHh-------C----------CHH-----HHHHHHHHHh---hhh-cc---cCchHHHHHhhc
Q 044097 271 --L-AGRISMVNSPREVIVA-------G----------GKI-----AVQQNLALLA---NQV-RL---FDSTHYLKAFGI 318 (439)
Q Consensus 271 --l-kgkI~~~~~~~~~~~~-------~----------G~d-----~~~e~L~~l~---~~v-~~---~~~~~~~~~f~~ 318 (439)
+ ..|+++.++.+.++.. . |.. ...+.+..+. .+. .. -+++..+..|++
T Consensus 182 ~rfn~~Kl~~IDd~rti~sI~k~~~~~~~nd~~~v~~~~~q~~~~~~~~~~~s~i~~~~~~l~~lf~N~dS~~lln~la~ 261 (493)
T PF02030_consen 182 DRFNNNKLAIIDDARTIYSISKLIKTENNNDPKNVNPKGSQTNYFKNNYESVSYIGLVRNNLSTLFLNSDSNDLLNNLAN 261 (493)
T ss_pred ccccccceEEeccHHHHHHHHHHHhhccCCCccccccccccccccccchhhhhhhhhhhcchhhhhcCCChHHHHHHHhc
Confidence 2 2368999988887621 1 000 0111111111 111 11 234578899999
Q ss_pred CCeEEEEEccccHHHHHHcCC--------------CeeEEccCCCceeeeeEEEEecCC-CCcccccCCCCCCCHHHHHH
Q 044097 319 GDVWVAVGWSSDVLPAVKRMS--------------NVAVVVPKSGASLWADLWAIPAAS-RLETKQIGGQVRGPSPLIHQ 383 (439)
Q Consensus 319 Ge~~~~i~ws~~~~~~~~~~~--------------~v~~~vP~eG~~~~~~~~aI~k~a-~~~e~~~~~~~~~~~~aA~~ 383 (439)
|+...+++|.|+++++...+. ++..+=|+ .+....|.+.|++.. .+.+ .|++
T Consensus 262 ~~~~~aimYNGDalyA~~gGd~~~E~~~~~~~~~~nf~~vr~~-~tl~~LD~iVinK~~~e~ed------------~AYe 328 (493)
T PF02030_consen 262 GQFDGAIMYNGDALYAANGGDYFEEKDENKLPDSNNFHIVRPK-NTLSLLDFIVINKISSENED------------KAYE 328 (493)
T ss_pred cccceEEEEccHHHHHhcCCCcccccccccCCCCCceeeeccC-CCceehhhhhhcccCHHHHH------------HHHH
Confidence 999999999999998754321 22333333 234455755555533 4555 9999
Q ss_pred HHHHHhc
Q 044097 384 WIEFCLQ 390 (439)
Q Consensus 384 FI~fllS 390 (439)
||++++-
T Consensus 329 ~I~~l~~ 335 (493)
T PF02030_consen 329 FINKLAF 335 (493)
T ss_pred HHHHHHH
Confidence 9999863
No 32
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=98.76 E-value=7.5e-07 Score=87.43 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=92.0
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHh------hh-hcc
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLA------NQ-VRL 306 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~------~~-v~~ 306 (439)
|-.++..+.++|++.++--.+ +..|.++.+... .++++.+..... .| ..+.+.|+.+. +. +..
T Consensus 103 ~~~~fa~n~lvl~~~~~~~~~-----~~~~~~l~~~~~-~~lai~~p~~~P---~G-~ya~~~l~~~g~~~~~~~k~v~~ 172 (258)
T COG0725 103 SRIVFAGNRLVLAVPKGSKKK-----IESLEDLLERPD-VRLAIGDPKTVP---AG-KYAKEALELLGLWYTLKDKLVLA 172 (258)
T ss_pred ceEEeeCCeEEEEEeCCCccC-----cccHHHHhcCcC-cEEEecCCCCCC---ch-HHHHHHHHHhchhhhccccEEec
Confidence 457788899999997764332 344999987532 367765532211 12 12223332221 11 111
Q ss_pred cCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH
Q 044097 307 FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE 386 (439)
Q Consensus 307 ~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~ 386 (439)
-+-.+....+..|++..++.|.+++.... ...+-..+|.+...-.....+|+++++|++ +|++|++
T Consensus 173 ~~v~~~l~~V~~G~ad~g~vy~sd~~~~~--~~~~~~~~~~~~~~Pi~y~iav~~~~~~~~------------~A~~f~~ 238 (258)
T COG0725 173 TNVRQALAYVETGEADAGFVYVSDALLSK--KVKIVGVFPEDLHSPIVYPIAVLKNAKNPE------------LAKEFVD 238 (258)
T ss_pred CcHHHHHHHHHcCCCCeEEEEEEhhhccC--CceEEEEcccccCCCeEEEEEEEcCCCCHH------------HHHHHHH
Confidence 11135667889999999999887654321 122333466543333456789999999988 9999999
Q ss_pred HHhcHHhhHHHHhhcCCCCC
Q 044097 387 FCLQTARALPFKQEVIPGAS 406 (439)
Q Consensus 387 fllS~e~q~~~a~~~~g~~~ 406 (439)
|+.|++.|..|.+ .|+..
T Consensus 239 fl~s~~a~~il~~--~Gf~~ 256 (258)
T COG0725 239 FLLSPEAQEILEK--YGFEP 256 (258)
T ss_pred HHhCHHHHHHHHH--cCCCC
Confidence 9999999999975 45533
No 33
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional
Probab=98.59 E-value=4.8e-07 Score=84.48 Aligned_cols=150 Identities=12% Similarity=0.104 Sum_probs=92.6
Q ss_pred EeeeecceEEEEEeCcccccCCCCCCCCccc-ccCccccCceeeccChhH--------HHHhCC------HHHHHHHHHH
Q 044097 235 AAPYRWGTMAIGYKKSKFQNHNLAPIEDWKD-PWWPELAGRISMVNSPRE--------VIVAGG------KIAVQQNLAL 299 (439)
Q Consensus 235 gvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~D-L~dp~lkgkI~~~~~~~~--------~~~~~G------~d~~~e~L~~ 299 (439)
..+|..+..+|+|+++.-. .+.+|.| |.++.+ +|++.+.... ++...| ++.+.+.+..
T Consensus 16 ~~~~a~n~lvl~~~~~~~~-----~~~~~~d~L~~~~~--~iai~~P~~~P~G~~a~~~l~~~~~~~~~~~~~l~~~~~~ 88 (188)
T PRK03537 16 VVPFARNRLCAIARADVML-----TSDNLLDLLLDPDI--RLGTSTPGADPSGDYAWQLFDRAEALHAGAGEALRTKALQ 88 (188)
T ss_pred ceeeeeceEEEEEcCCCCC-----CccCHHHHhcCCCc--EEEcCCCCCCcchHHHHHHHHHHHhhccCcchHHHHHHHH
Confidence 3678889999999987532 4678977 667764 5777653211 111111 1222111111
Q ss_pred Hh--hhhcccC-chHHHH-HhhcCCeEEEEEccccHHHHHHcCCCeeE-EccCCCceeeeeEEEEecCCCCcccccCCCC
Q 044097 300 LA--NQVRLFD-STHYLK-AFGIGDVWVAVGWSSDVLPAVKRMSNVAV-VVPKSGASLWADLWAIPAASRLETKQIGGQV 374 (439)
Q Consensus 300 l~--~~v~~~~-~~~~~~-~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~-~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~ 374 (439)
+- .++..+. ..+... .+.+|++.+++.|.+++.....+..++.+ .+|.+........++|.++++ +
T Consensus 89 ~v~~~~~~~~~~~~~~~~~~v~~G~adag~vy~s~~~~~~~~~~~~~~i~iP~~~~~~i~y~iav~k~~~--~------- 159 (188)
T PRK03537 89 LVGGPNSAPIPAGRNAAEWLIENKQADIFIGYASNAPLAQREVPSLQVVDLPEPLAVGAEYGLAILKDAS--P------- 159 (188)
T ss_pred HhCCCCCCcCCCcchHHHHHHHCCCCCEEEEEecHHHHHhccCCCCeEEeCCCCcceeeeeeEEEecCCh--H-------
Confidence 11 1111111 113334 67899999999988876543222335664 478876666666788888653 6
Q ss_pred CCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCC
Q 044097 375 RGPSPLIHQWIEFCLQTARALPFKQEVIPGASP 407 (439)
Q Consensus 375 ~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P 407 (439)
+|++|++||+|+|.|..|.+ .||..|
T Consensus 160 -----~A~~F~~fl~s~eaq~i~~~--~Gf~~~ 185 (188)
T PRK03537 160 -----QAKRLADFLLSPKGQAILAQ--YGFSPP 185 (188)
T ss_pred -----HHHHHHHHHhCHHHHHHHHH--cCCCCC
Confidence 89999999999999999985 577554
No 34
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only]
Probab=97.90 E-value=0.00028 Score=66.01 Aligned_cols=139 Identities=18% Similarity=0.190 Sum_probs=87.2
Q ss_pred eeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeecc-------ChhHHHH-hCCHHHHHHHHHHHhhhhcccC
Q 044097 237 PYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVN-------SPREVIV-AGGKIAVQQNLALLANQVRLFD 308 (439)
Q Consensus 237 P~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~-------~~~~~~~-~~G~d~~~e~L~~l~~~v~~~~ 308 (439)
|.+.-..+|..++.--+ -++..+||+++... |...+ +...+|. ..|+..-.+.++.+++|+..|.
T Consensus 97 ply~R~aiIlvkkgNPk-----nIk~~eDll~~gi~--ivV~dGaG~sntsgtgvwED~agr~~~ie~v~afR~NI~~fa 169 (252)
T COG4588 97 PLYLRPAIILVKKGNPK-----NIKGFEDLLKPGIG--IVVNDGAGVSNTSGTGVWEDIAGRKGNIETVAAFRKNIVAFA 169 (252)
T ss_pred eeeeeceEEEecCCCcc-----ccccHHHHhcCCce--EEEeCCCcccCCCCceehHhhhcccccHHHHHHHHhceEEEc
Confidence 33344556666665544 37899999986432 22222 1222332 2355445678899999988775
Q ss_pred --chHHHHHhhc-CCeEEEEEccccHHHHHHcCCCeeEEccCC-CceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHH
Q 044097 309 --STHYLKAFGI-GDVWVAVGWSSDVLPAVKRMSNVAVVVPKS-GASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQW 384 (439)
Q Consensus 309 --~~~~~~~f~~-Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~e-G~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~F 384 (439)
+....++|.+ -++...+.|.... +.++++.-.++.+ ...+|=+.-.+++...++ .|.+|
T Consensus 170 pnSgaArkaf~~~~~aDawItW~dWa----~snpdig~~v~~~~d~vIyRd~nv~~~~~a~~-------------ea~~F 232 (252)
T COG4588 170 PNSGAARKAFENQPDADAWITWADWA----KSNPDIGDAVEIEKDYVIYRDFNVALAKDANK-------------EARDF 232 (252)
T ss_pred cCCchHHHHHhcCCCCceEEEecchh----hhCCchhceeecccceEEeeecceeecCCCCH-------------HHHHH
Confidence 3456788988 5677777776433 2356666555543 344555544444444555 59999
Q ss_pred HHHHhcHHhhHHHHh
Q 044097 385 IEFCLQTARALPFKQ 399 (439)
Q Consensus 385 I~fllS~e~q~~~a~ 399 (439)
++||.|+|.|..|.+
T Consensus 233 ~dyl~S~EAq~ifkk 247 (252)
T COG4588 233 ADYLQSDEAQKIFKK 247 (252)
T ss_pred HHHHhhHHHHHHHHh
Confidence 999999999999975
No 35
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA. Members of this protein family are tungstate (and, more weakly, molybdate) binding proteins of tungstate(/molybdate) ABC transporters, as first characterized in Pyrococcus furiosus. Model seed members and cutoffs, pending experimental evidence for more distant homologs, were chosen such that this model identifies select archaeal proteins, excluding weaker archaeal and all bacterial homologs. Note that this family is homologous to molybdate transporters, and that at least one other family of tungstate transporter binding protein, TupA, also exists.
Probab=97.60 E-value=0.0023 Score=63.43 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=41.7
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHH------------------HcCCCeeEE--ccC--CCceeeeeEEEEecCCCCccc
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAV------------------KRMSNVAVV--VPK--SGASLWADLWAIPAASRLETK 368 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~------------------~~~~~v~~~--vP~--eG~~~~~~~~aI~k~a~~~e~ 368 (439)
+....+.+|++.+++.|.+++.... +....+.+. .|. .-..-.....+|+++++|++
T Consensus 186 ~~~~~v~sG~aD~g~vY~S~A~~~~~~~~~lP~~~n~~~~~~~~~y~~v~~~~~~~~~~~~~~pi~y~~ai~~~~~~~~- 264 (273)
T TIGR03730 186 ELLSLLESGEIDYAFIYKSVAVQHGLKYIELPDEINLGDYSYADFYKKVSVELGGGKKTITGKPIVYGITVPKNAPNRE- 264 (273)
T ss_pred hHHHHHHCCCCcEEEEEeeecccCCCceEECChhccCCChhhhcccceEEEEecCCCceEecCCEEEEEeccCCCCCHH-
Confidence 5667889999999999887654210 000112222 121 00011235788999999998
Q ss_pred ccCCCCCCCHHHHHHHHHHH
Q 044097 369 QIGGQVRGPSPLIHQWIEFC 388 (439)
Q Consensus 369 ~~~~~~~~~~~aA~~FI~fl 388 (439)
+|++|++||
T Consensus 265 -----------~a~~F~~fl 273 (273)
T TIGR03730 265 -----------EAIEFLKFL 273 (273)
T ss_pred -----------HHHHHHhhC
Confidence 999999995
No 36
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=0.00012 Score=70.24 Aligned_cols=207 Identities=18% Similarity=0.285 Sum_probs=117.2
Q ss_pred HHHHHHHHhhc-CCeEEEEEeeeccc--------ccccceEecC--chhHHHHHHCCCcccccccccchhhcccchhHHH
Q 044097 149 QSWVKDFMRSQ-GKRLKFQMNLCASI--------DGIVNNLSTP--FNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKV 217 (439)
Q Consensus 149 ~~li~~Fek~~-GI~V~~~~~~~~s~--------~~~~~dv~~~--~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~~~ 217 (439)
+.....+++.+ |-++++.. .+++. +++-+|++.- ...+..+.++|-|-|-+ |..++
T Consensus 50 ~~F~~~w~k~~pG~~lti~Q-SHAGsSkQAraIlqGL~ADVVTfNQVtDVqiLhdkg~lipAd----------Wq~~l-- 116 (341)
T COG4150 50 PAFEAQWAKDNPGDKLTIKQ-SHAGSSKQARAILQGLKADVVTFNQVTDVQILHDKGKLIPAD----------WQSRL-- 116 (341)
T ss_pred HHHHHHHHhhCCCceeEEec-ccccchHHHHHHHhhcccceEEeecceeeeeehhcCCccchh----------hhhhC--
Confidence 45666666676 86776641 23332 2334455431 23445566777665422 22222
Q ss_pred hhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccC-----hhHHHH------
Q 044097 218 YLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNS-----PREVIV------ 286 (439)
Q Consensus 218 ~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~-----~~~~~~------ 286 (439)
|+. +-|| ++++++..++.--+ -+++|+||.+...| +.++++ .+-.+.
T Consensus 117 -----------Pnn---sSPf-YS~~aFLVR~GNPK-----~IkdW~DLvRdDVk--~iFPNPKTSGNaRYTYLAA~~~a 174 (341)
T COG4150 117 -----------PNN---SSPF-YSTMAFLVRKGNPK-----NIKDWDDLVRDDVK--LIFPNPKTSGNARYTYLAAWGAA 174 (341)
T ss_pred -----------CCC---CCcc-ccchHHHhhcCCcc-----cCccHHHHhhhcce--EecCCCCCCCchhhhHHHHHHHH
Confidence 112 2344 45566666666544 47999999986543 333322 121121
Q ss_pred --hCCHH--HHHHHHHHHhhhhcccCch--HHHHHh-hcCCeEEEEEccccHHHHHHcC--CCeeEEccCCCceeeee-E
Q 044097 287 --AGGKI--AVQQNLALLANQVRLFDST--HYLKAF-GIGDVWVAVGWSSDVLPAVKRM--SNVAVVVPKSGASLWAD-L 356 (439)
Q Consensus 287 --~~G~d--~~~e~L~~l~~~v~~~~~~--~~~~~f-~~Ge~~~~i~ws~~~~~~~~~~--~~v~~~vP~eG~~~~~~-~ 356 (439)
..|.| ...+++.++-.|+..|+.. ....-| ..|-..+.+.+.+..-.++++. ..+++++|+.. +..+ -
T Consensus 175 ~~af~gD~~k~~ef~~k~~~Nv~VFDTGGRgATTtFveRglGDVLItFEsE~~~irkqyg~d~~evVvP~~s--iLAEFP 252 (341)
T COG4150 175 DEAFGGDKAKTEEFMTKFLKNVEVFDTGGRGATTTFVERGLGDVLITFESEVNNIRKQYGADKFEVVVPKTS--ILAEFP 252 (341)
T ss_pred HHhhcCcHHHHHHHHHHHhcCCceeccCCccccchhhhhccccEEEEeehhhccHHHHhCcccceEeccchh--hhhhcc
Confidence 12333 4678889999999888743 333344 3444445566677777777653 46788899631 1111 1
Q ss_pred EEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhh
Q 044097 357 WAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQE 400 (439)
Q Consensus 357 ~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~ 400 (439)
.++.. ++.+ .||.-++|+.+++||.||+.|..+++.
T Consensus 253 Va~Vd--kvv~------k~Gt~~~AkaYl~~LYsp~~Q~i~a~~ 288 (341)
T COG4150 253 VAWVD--KVVD------KNGTEKAAKAYLNYLYSPQAQTIIAEF 288 (341)
T ss_pred hhHHh--hhhh------hcccHHHHHHHHHHhcCcHHHHHHHHh
Confidence 22222 1222 356677999999999999999999863
No 37
>PRK09861 cytoplasmic membrane lipoprotein-28; Provisional
Probab=95.86 E-value=0.28 Score=48.63 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=51.7
Q ss_pred chHHHHHhhcCCeEEEEEccccHHHHHHcCCCee--EEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH
Q 044097 309 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVA--VVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE 386 (439)
Q Consensus 309 ~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~--~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~ 386 (439)
..+....+..|++.+++.|...+... ...+.. ..+... ..-+...+++.++-++.+ ..++|++
T Consensus 185 ~~q~~~al~dg~vD~a~i~~~~~~~a--g~~~~~~~l~~e~~-~~~~~n~~~~r~~~~~~~------------~~~~lv~ 249 (272)
T PRK09861 185 GAQLPRVLDDPKVDVAIISTTYIQQT--GLSPVHDSVFIEDK-NSPYVNILVAREDNKNAE------------NVKEFLQ 249 (272)
T ss_pred HHHhHhhccCcccCEEEEchhHHHHc--CCCcccceeEEcCC-CCCeEEEEEEcCCccCCH------------HHHHHHH
Confidence 34667889999998888877666531 111111 222111 112344566666555555 8999999
Q ss_pred HHhcHHhhHHHHhhcCCCCCC
Q 044097 387 FCLQTARALPFKQEVIPGASP 407 (439)
Q Consensus 387 fllS~e~q~~~a~~~~g~~~P 407 (439)
-+-|+|+...+.+++.|...|
T Consensus 250 ~~~s~~v~~~i~~~~~g~~~p 270 (272)
T PRK09861 250 SYQSPEVAKAAETIFNGGAVP 270 (272)
T ss_pred HHcCHHHHHHHHHHcCCceee
Confidence 999999999887765443333
No 38
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=95.50 E-value=2.2 Score=42.28 Aligned_cols=86 Identities=7% Similarity=0.018 Sum_probs=56.7
Q ss_pred chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHH
Q 044097 309 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFC 388 (439)
Q Consensus 309 ~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fl 388 (439)
..+...+|..|++..++.|...+..+..+...-.+++..... .+.+.+++.+...|++ .+++|++-+
T Consensus 184 ~~~~~~al~~g~vDaa~i~~~~a~~a~~~~~~~~l~~e~~~~-~~~~~~~v~~~~~~~~------------~~~~l~~a~ 250 (271)
T PRK11063 184 APQLPRSLDDAQIALAVINTTYASQIGLTPAKDGIFVEDKDS-PYVNLIVAREDNKDAE------------NVKKFVQAY 250 (271)
T ss_pred HHHHHHhcccccccEEEEChHHHHHcCCCCCCCeeEECCCCC-CeEEEEEECCcccCCH------------HHHHHHHHH
Confidence 456778899999999998876665432211111233222112 3446677777777777 999999999
Q ss_pred hcHHhhHHHHhhcCCCCCC
Q 044097 389 LQTARALPFKQEVIPGASP 407 (439)
Q Consensus 389 lS~e~q~~~a~~~~g~~~P 407 (439)
.|+|++..+.+++.|...|
T Consensus 251 ~s~~v~~~i~~~~~g~~~~ 269 (271)
T PRK11063 251 QSDEVYEAANKVFNGGAVK 269 (271)
T ss_pred cCHHHHHHHHHHcCCCeec
Confidence 9999999887764343333
No 39
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein. A subset of this model in which nearly all members exhibit genomic context with elements of phosphonate metabolism, particularly the C-P lyase system has been built (TIGR03431) as an equivalog. Nevertheless, there are members of this subfamily (TIGR01098) which show up sporadically on a phylogenetic tree that also show phosphonate context and are most likely competent to transport phosphonates.
Probab=92.17 E-value=11 Score=35.83 Aligned_cols=29 Identities=28% Similarity=0.028 Sum_probs=22.3
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHcC
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKRM 338 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~ 338 (439)
.+..+++.+|++.+++.+......+..++
T Consensus 184 ~~~~~al~~G~~Da~~~~~~~~~~~~~~~ 212 (254)
T TIGR01098 184 DASALAVANGKVDAATNNSSAIGRLKKRG 212 (254)
T ss_pred HHHHHHHHcCCCCeEEecHHHHHHHHHhC
Confidence 45678999999999998877766555554
No 40
>COG0226 PstS ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=91.65 E-value=17 Score=36.84 Aligned_cols=102 Identities=17% Similarity=0.214 Sum_probs=57.4
Q ss_pred cHHHHHHHHhhc-CCeEEEEEeeecccccccceEecCchhHHHHHHCCCcccccccccchhhcccchh-HHHhhhcCCCc
Q 044097 148 PQSWVKDFMRSQ-GKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHK-WKVYLRSNDAG 225 (439)
Q Consensus 148 ~~~li~~Fek~~-GI~V~~~~~~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~-~~~~l~~~~~~ 225 (439)
.+.|.++|++.+ |++|+++ ..+++.+ +..++..| .++-... ..+.+. ..... .
T Consensus 57 ~~~~a~~~~~~~~~~~v~~q--~~GSg~G-----------~~~~~~~~--vDig~ss-----~p~~~~e~~~~~-----~ 111 (318)
T COG0226 57 MEAWAEEFQKAYPNVKVNVQ--AGGSGAG-----------IKQALAGG--VDIGASS-----RPLKDSEKEADA-----K 111 (318)
T ss_pred HHHHHHHHHHHCCCeeEEEe--cCCChHH-----------HHHHhcCC--CccccCC-----CCCCcchHHHHH-----h
Confidence 468999999997 8999986 2233333 33345555 4443321 111111 11000 0
Q ss_pred ccCCCCCEEEeeeecceEEEEEeCcccccCCC----------CCCCCcccccCccccCceee
Q 044097 226 EIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNL----------APIEDWKDPWWPELAGRISM 277 (439)
Q Consensus 226 ~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl----------~~P~TW~DL~dp~lkgkI~~ 277 (439)
. ..++.-+|...+..+++||.+-.....+ ...++|.|+.-+....+|..
T Consensus 112 -~--~~~l~~~pva~d~i~vi~N~~~~~~~~Lt~~~l~~If~G~it~W~d~~~~~~n~~I~v 170 (318)
T COG0226 112 -A--GKKLVEFPVAIDAIVVIVNLPNPDVLNLTKDQLADIFSGKITNWNDVGGQLLNPGITV 170 (318)
T ss_pred -c--CCCceEeeEEeeeEEEEEcCCCccccccCHHHHHHHhcCCCccccccCcccCCCCceE
Confidence 1 2456789999999999999887643321 14677877654433333544
No 41
>PRK10859 membrane-bound lytic transglycosylase F; Provisional
Probab=83.52 E-value=55 Score=34.98 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=55.8
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhhhh--cc--c-C
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQV--RL--F-D 308 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~~v--~~--~-~ 308 (439)
+.-||.....+++++++. ..+++++||-. .+|++..+.. .....+.+....+.+ .. + +
T Consensus 121 FS~Py~~~~~~lv~r~~~------~~i~~l~dL~G----k~I~V~~gS~-------~~~~L~~l~~~~p~i~~~~~~~~s 183 (482)
T PRK10859 121 FGPPYYSVSQQLVYRKGQ------PRPRSLGDLKG----GTLTVAAGSS-------HVETLQELKKKYPELSWEESDDKD 183 (482)
T ss_pred ccCCceeeeEEEEEeCCC------CCCCCHHHhCC----CeEEEECCCc-------HHHHHHHHHHhCCCceEEecCCCC
Confidence 567777777889998864 14678877632 1366543211 011111111111221 11 2 2
Q ss_pred chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecC
Q 044097 309 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAA 362 (439)
Q Consensus 309 ~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~ 362 (439)
..+..+++.+|++.+++.-...+.......+++.+..+-.. ...-.|+++++
T Consensus 184 ~~e~l~aL~~G~iDa~v~d~~~~~~~~~~~p~l~v~~~l~~--~~~~~~av~k~ 235 (482)
T PRK10859 184 SEELLEQVAEGKIDYTIADSVEISLNQRYHPELAVAFDLTD--EQPVAWALPPS 235 (482)
T ss_pred HHHHHHHHHCCCCCEEEECcHHHHHHHHhCCCceeeeecCC--CceeEEEEeCC
Confidence 34678999999999888644333222333445554322110 01235778764
No 42
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=79.92 E-value=30 Score=35.32 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=50.8
Q ss_pred cceEEEEEeCcccccCCCCCCCCcccccCccccCc----------eeeccChhHHHHhCCHHHHHHHHHHH--hhhhccc
Q 044097 240 WGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGR----------ISMVNSPREVIVAGGKIAVQQNLALL--ANQVRLF 307 (439)
Q Consensus 240 ~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgk----------I~~~~~~~~~~~~~G~d~~~e~L~~l--~~~v~~~ 307 (439)
....++++.+...+.+ ..+||+||.+++++.+ |.-.+.. ........+.|..+ ..++...
T Consensus 112 ~a~~G~~VP~yv~e~~---gI~Si~DL~~~~~a~~F~~e~~gkg~i~g~~~G-----~~~~~~~~~~l~~yGL~~~~~~~ 183 (331)
T PRK11119 112 GAAQGYLIDKKTADKY---NITNIAQLKDPKIAKLFDTNGDGKADLTGCNPG-----WGCEAVINHQLKAYGLEDTVTHN 183 (331)
T ss_pred CcceeeeecHHHHHHc---CCCCHHHhCCcHHHHhcCCCCCCCcceECCCCC-----ccccHHHHHHHHhcCCCcceeEC
Confidence 3456777777766554 3789999986544422 3211110 00011111222211 1112222
Q ss_pred Cch------HHHHHhhcCCeEEEEEccccHHHHHH-cCCCeeEE
Q 044097 308 DST------HYLKAFGIGDVWVAVGWSSDVLPAVK-RMSNVAVV 344 (439)
Q Consensus 308 ~~~------~~~~~f~~Ge~~~~i~ws~~~~~~~~-~~~~v~~~ 344 (439)
.++ +...++.+|+..++..|+..++...- .+.++.|+
T Consensus 184 ~~S~aam~a~l~~A~~~~epiv~~~W~Phw~~~~~~~~~dl~~L 227 (331)
T PRK11119 184 QGNYAALMADTIARYKEGKPVLYYTWTPYWVSDVLKPGKDVVWL 227 (331)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecchhHHhhccCCCCeEEe
Confidence 221 34578999999999999999876543 12245543
No 43
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins. bacterial proteins, eukaryotic ones are in PBPe
Probab=67.32 E-value=75 Score=27.70 Aligned_cols=84 Identities=21% Similarity=0.249 Sum_probs=48.2
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhh--hhcccC-ch
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLAN--QVRLFD-ST 310 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~--~v~~~~-~~ 310 (439)
+..|+.....+++.+++. ++++|+||-. .+|++..... ....+..... .+..+. .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~-------~~~~~~dL~g----~~i~~~~g~~----------~~~~~~~~~~~~~~~~~~~~~ 137 (219)
T smart00062 79 FSDPYYKSGQVILVRKDS-------PIKSLEDLKG----KKVAVVAGTT----------GEELLKKLYPEAKIVSYDSQA 137 (219)
T ss_pred eccceeeceeEEEEecCC-------CCCChHHhCC----CEEEEecCcc----------HHHHHHHhCCCceEEEcCCHH
Confidence 456666666777887753 4689999822 1466543110 1122222211 222233 34
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHcC
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKRM 338 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~~ 338 (439)
+...++.+|++.+++.+...+.....+.
T Consensus 138 ~~~~~l~~g~~d~~~~~~~~~~~~~~~~ 165 (219)
T smart00062 138 EALAALKAGRADAAVADAPALAALVKQH 165 (219)
T ss_pred HHHHHhhcCcccEEEeccHHHHHHHHhc
Confidence 5678999999999988877665554443
No 44
>TIGR00363 lipoprotein, YaeC family. This family of putative lipoproteins contains a consensus site for lipoprotein signal sequence cleavage. Included in this family is the E. coli hypothetical protein yaeC. About half of the proteins between the noise and trusted cutoffs contain the consensus lipoprotein signature and may belong to this family.
Probab=63.56 E-value=28 Score=34.20 Aligned_cols=86 Identities=10% Similarity=0.022 Sum_probs=55.3
Q ss_pred chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHH
Q 044097 309 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFC 388 (439)
Q Consensus 309 ~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fl 388 (439)
..+...+|.+|++.+++.|...+..+...-..-...+..... -+.+.+++.++..+.+ ..++|++-+
T Consensus 171 ~~~~~~al~~g~vDaa~v~~~~~~~agl~~~~~~i~~e~~~~-~~~n~l~~r~~~~~~~------------~~~~lv~~~ 237 (258)
T TIGR00363 171 TSQLPRALDDPKVDLAVINTTYAGQVGLNPQDDGVFVEDKDS-PYVNIIVSREDNKDAE------------NVKDFIQSY 237 (258)
T ss_pred HHHHHHHhhcccccEEEEChHHHHHcCCCcCcCceeecCCCC-CeeEEEEEcCCccCCH------------HHHHHHHHH
Confidence 346678899999999999887665431110011122221111 2346677777666666 999999999
Q ss_pred hcHHhhHHHHhhcCCCCCC
Q 044097 389 LQTARALPFKQEVIPGASP 407 (439)
Q Consensus 389 lS~e~q~~~a~~~~g~~~P 407 (439)
-|+|.+..+.+++.|...|
T Consensus 238 ~s~~v~~~i~~~~~g~~~p 256 (258)
T TIGR00363 238 QSEEVYQAAQKHFNGGAVK 256 (258)
T ss_pred cCHHHHHHHHHHcCCCeec
Confidence 9999999987765443343
No 45
>PRK10797 glutamate and aspartate transporter subunit; Provisional
Probab=53.87 E-value=2e+02 Score=28.46 Aligned_cols=158 Identities=12% Similarity=0.041 Sum_probs=75.2
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHhh--hhcccCc-
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLAN--QVRLFDS- 309 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~--~v~~~~~- 309 (439)
|.-||.....+++++++- .+++|+|| +| +|+...... ..+...+....... ++..+.+
T Consensus 126 fS~Py~~~~~~lv~r~~~-------~i~sl~dL-----~Gk~V~v~~gs~------~~~~l~~~~~~~~~~~~i~~~~~~ 187 (302)
T PRK10797 126 FSDTIFVVGTRLLTKKGG-------DIKDFADL-----KGKAVVVTSGTT------SEVLLNKLNEEQKMNMRIISAKDH 187 (302)
T ss_pred ecccEeeccEEEEEECCC-------CCCChHHc-----CCCEEEEeCCCc------HHHHHHHHhhhcCCceEEEEeCCH
Confidence 788998888999999862 36888887 34 355432211 00111111111111 2223333
Q ss_pred hHHHHHhhcCCeEEEEEccccHHH-HHHcC-C-CeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLP-AVKRM-S-NVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE 386 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~-~~~~~-~-~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~ 386 (439)
.+..+++.+|++.+++.-...+.. +.+.. . .+.+ ++. .......++++.++.+ + ......++|.
T Consensus 188 ~~~l~~L~~GrvDa~i~d~~~~~~~~~~~~~~~~l~i-~~~-~~~~~~~~~a~~k~~~--~---------L~~~in~~L~ 254 (302)
T PRK10797 188 GDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWEI-VGK-PQSQEAYGCMLRKDDP--Q---------FKKLMDDTIA 254 (302)
T ss_pred HHHHHHHHcCCceEEEccHHHHHHHHHcCCCCcceEE-CCc-cCCcCceeEEEeCCCH--H---------HHHHHHHHHH
Confidence 467789999999887753322222 22222 2 2222 221 1111233566776532 2 1114444555
Q ss_pred HHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHh
Q 044097 387 FCLQTARALPFKQEVIPGASPSALESTLVKLPEELL 422 (439)
Q Consensus 387 fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~ 422 (439)
-+-......++.+++.+.-.|...-.....|.+|+.
T Consensus 255 ~l~~~G~l~~i~~kw~~~~~~~~~~~~~~~~~~~~~ 290 (302)
T PRK10797 255 QAQTSGEAEKWFDKWFKNPIPPKNLNMNFELSDEMK 290 (302)
T ss_pred HHHhCchHHHHHHHHcCCCCCCccccccCCCcHHHH
Confidence 543333333444555444344333233455666654
No 46
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional
Probab=51.65 E-value=2.5e+02 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=21.0
Q ss_pred chHHHHHhhcCCeEEEEEccccHHHHHH
Q 044097 309 STHYLKAFGIGDVWVAVGWSSDVLPAVK 336 (439)
Q Consensus 309 ~~~~~~~f~~Ge~~~~i~ws~~~~~~~~ 336 (439)
..+...+|.+|++.+++.|.........
T Consensus 165 ~~~~~~al~~G~vDa~~~~ep~~~~~~~ 192 (314)
T PRK11553 165 PADARAAFQQGNVDAWAIWDPYYSAALL 192 (314)
T ss_pred hHHHHHHHHcCCCCEEEEcCcHHHHHHh
Confidence 3466789999999999988766555444
No 47
>PRK10918 phosphate ABC transporter periplasmic substrate-binding protein PstS; Provisional
Probab=50.79 E-value=59 Score=33.43 Aligned_cols=20 Identities=20% Similarity=0.708 Sum_probs=16.4
Q ss_pred ccHHHHHHHHhhcCCeEEEE
Q 044097 147 VPQSWVKDFMRSQGKRLKFQ 166 (439)
Q Consensus 147 ~~~~li~~Fek~~GI~V~~~ 166 (439)
+.+.|.++|++++|++|+++
T Consensus 40 l~~~~a~~y~~~~~v~v~~~ 59 (346)
T PRK10918 40 VYAKWADTYQKETGNKVNYQ 59 (346)
T ss_pred HHHHHHHHHHhhcCCEEEEe
Confidence 34689999988889999886
No 48
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=48.05 E-value=32 Score=33.47 Aligned_cols=73 Identities=5% Similarity=-0.061 Sum_probs=41.5
Q ss_pred hhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEe--cCCCCcccccCCCCCCCHHHHHHHHHHHhcHHh
Q 044097 316 FGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIP--AASRLETKQIGGQVRGPSPLIHQWIEFCLQTAR 393 (439)
Q Consensus 316 f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~--k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~ 393 (439)
+++..-+..+.-.+.++.++. .+.+.+++-.+.....+..+.+. +..++-+ -.+|.+|++|++|++.
T Consensus 186 ~A~Ek~aytLtDrgTylaYr~-r~~L~iv~~gd~~L~N~Ysvi~vNP~r~~~vn----------y~~A~kfi~w~~s~~g 254 (280)
T COG2998 186 MANEKKAYTLTDRGTYLAYRN-RPTLVIVLEGDPSLFNPYSVIAVNPKRVKGVN----------YTAATKFIEWLMSEKG 254 (280)
T ss_pred HhhhhceeEeeccceeeEecC-ccceEEEecCCccccCceeEEEEchhcCCCcC----------chHHHHHHHHHhhHHH
Confidence 455554455544444443322 23455555444455555555544 3333222 2289999999999999
Q ss_pred hHHHHh
Q 044097 394 ALPFKQ 399 (439)
Q Consensus 394 q~~~a~ 399 (439)
|.-+++
T Consensus 255 q~~Ia~ 260 (280)
T COG2998 255 QNLIAE 260 (280)
T ss_pred HHHHhh
Confidence 987764
No 49
>COG5510 Predicted small secreted protein [Function unknown]
Probab=46.83 E-value=12 Score=26.71 Aligned_cols=24 Identities=8% Similarity=0.142 Sum_probs=18.6
Q ss_pred cchhhHHHHHHHHHhhcccccccC
Q 044097 67 KLPLQLASSSVLLFLGFGARICSA 90 (439)
Q Consensus 67 ~~~~~~~~~s~~~~~~~~~~ac~~ 90 (439)
.|||-+++++++++.++.++||.-
T Consensus 1 mmk~t~l~i~~vll~s~llaaCNT 24 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAACNT 24 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhh
Confidence 367777788888888888889943
No 50
>TIGR02122 TRAP_TAXI TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds.
Probab=45.92 E-value=47 Score=32.56 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=13.6
Q ss_pred HHHHHHHHhhcC-CeEEEE
Q 044097 149 QSWVKDFMRSQG-KRLKFQ 166 (439)
Q Consensus 149 ~~li~~Fek~~G-I~V~~~ 166 (439)
..+.+.|.++++ ++|++.
T Consensus 48 ~~la~~~~~~~~~i~v~~~ 66 (320)
T TIGR02122 48 GAIAQLINKKSGKLRVRVQ 66 (320)
T ss_pred HHHHHHHhccCCCeeEEEE
Confidence 456778888875 888886
No 51
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily []. It is often associated with a helix-turn-helix domain.
Probab=43.08 E-value=1e+02 Score=28.80 Aligned_cols=122 Identities=13% Similarity=0.082 Sum_probs=68.4
Q ss_pred EEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHH-HHHH-------HHhhhh
Q 044097 233 IWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQ-QNLA-------LLANQV 304 (439)
Q Consensus 233 ~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~-e~L~-------~l~~~v 304 (439)
.--+....-..++++++..-+ .+++|+||.++.+ ++.-.+... |.-..+ +.|. .+..+.
T Consensus 61 ~v~v~~~~r~~Gl~v~~~np~-----~i~~~~dL~~~~~--r~vnR~~GS------GtR~l~d~~l~~~gi~~~~i~gy~ 127 (193)
T PF12727_consen 61 VVLVRLARREQGLIVRPGNPK-----GITSLEDLADPGL--RFVNRQPGS------GTRILFDQLLAEEGIDPEDIPGYA 127 (193)
T ss_pred EEEEeeeEEeeeEEEeCCCCc-----cCCCHHHhccCCc--EEEECCCCC------HHHHHHHHHHHHcCCChhhCCCcc
Confidence 345677777888999888644 3799999966432 122221110 111111 1111 122222
Q ss_pred cc-cCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE-ccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHH
Q 044097 305 RL-FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIH 382 (439)
Q Consensus 305 ~~-~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~-vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~ 382 (439)
.. .+..+...+++.|.+.++++... ++.+...+.|+ +..+ -..++|++..-..+ ...
T Consensus 128 ~~~~th~~vA~aVa~G~AD~G~g~~~----~A~~~~gL~Fvpl~~E-----~~dlv~~~~~~~~~------------~vq 186 (193)
T PF12727_consen 128 QEANTHLAVAAAVASGKADAGIGIRA----AAEEFYGLDFVPLAEE-----RYDLVIRREDLEDP------------AVQ 186 (193)
T ss_pred ccccChHHHHHHHHcCCCCEEeehHH----HHHhhcCCCcEEcccc-----ceEEEEEhhHcCCH------------HHH
Confidence 11 23346678899999999886422 22222345653 2222 22477888877666 899
Q ss_pred HHHHHH
Q 044097 383 QWIEFC 388 (439)
Q Consensus 383 ~FI~fl 388 (439)
+||+||
T Consensus 187 ~ll~~l 192 (193)
T PF12727_consen 187 ALLDFL 192 (193)
T ss_pred HHHHHh
Confidence 999997
No 52
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein. This protein family, a sister family to TIGR03870, is found more broadly. It occurs a range of PQQ-biosynthesizing species, not just in known methanotrophs. Interpretation of evidence by homology and by direct experimental work suggest two different roles. By homology, this family appears to be the periplasmic substrate-binding protein of an ABC transport family. However, mutational studies and direct characterization for some sequences related to this family suggests this family may act as a maturation chaperone or additional subunit of a methanol dehydrogenase-like enzyme.
Probab=42.75 E-value=2.7e+02 Score=25.59 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=63.8
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHh--hhhcc----
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLA--NQVRL---- 306 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~--~~v~~---- 306 (439)
|..||.....+++++++.-. .+++|+|+ .++| +|++..... ..+.+.... .++..
T Consensus 73 fs~py~~~~~~lv~~~~~~~-----~~~~~~d~---~l~g~~V~v~~g~~----------~~~~l~~~~~~~~~~~~~~~ 134 (232)
T TIGR03871 73 TTRPYYRSTYVFVTRKDSLL-----DVKSLDDP---RLKKLRIGVFAGTP----------PAHWLARHGLVENVVGYSLF 134 (232)
T ss_pred ccCCcEeeeEEEEEeCCCcc-----cccchhhh---hhcCCeEEEEcCCh----------HHHHHHhcCccccccccccc
Confidence 56677777788899887411 35677662 2344 466543211 111121111 11111
Q ss_pred -----c-CchHHHHHhhcCCeEEEEEccccHHHHHHc-CCCeeEE-ccC--CCc-eeeeeEEEEecCCCCcccccCCCCC
Q 044097 307 -----F-DSTHYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVV-VPK--SGA-SLWADLWAIPAASRLETKQIGGQVR 375 (439)
Q Consensus 307 -----~-~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~-~~~v~~~-vP~--eG~-~~~~~~~aI~k~a~~~e~~~~~~~~ 375 (439)
+ +..+...++.+|++.+++.+...+.....+ +..+.+. .+. ... ..+.-++++.++ +.+
T Consensus 135 ~~~~~~~~~~~~~~~l~~G~~Da~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------- 204 (232)
T TIGR03871 135 GDYRPESPPGRMVEDLAAGEIDVAIVWGPIAGYFAKQAGPPLVVVPLLPEDGGIPFDYRIAMGVRKG--DKA-------- 204 (232)
T ss_pred ccccccCCHHHHHHHHHcCCcCEEEeccHHHHHHHHhCCCCceeeccccCCCCCCccceEEEEEecC--CHH--------
Confidence 1 234678899999998888765544333332 2333332 111 111 112235666654 345
Q ss_pred CCHHHHHHHHHHHh
Q 044097 376 GPSPLIHQWIEFCL 389 (439)
Q Consensus 376 ~~~~aA~~FI~fll 389 (439)
.+..|-+++.
T Consensus 205 ----l~~~~n~~l~ 214 (232)
T TIGR03871 205 ----WKDELNAVLD 214 (232)
T ss_pred ----HHHHHHHHHH
Confidence 7888888884
No 53
>COG2113 ProX ABC-type proline/glycine betaine transport systems, periplasmic components [Amino acid transport and metabolism]
Probab=41.50 E-value=3.9e+02 Score=26.99 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=17.3
Q ss_pred HHHhhcCCeEEEEEccccHHHH
Q 044097 313 LKAFGIGDVWVAVGWSSDVLPA 334 (439)
Q Consensus 313 ~~~f~~Ge~~~~i~ws~~~~~~ 334 (439)
.+...+++-.++..|+..++..
T Consensus 188 ~~a~~~~~piv~~~WsPh~m~~ 209 (302)
T COG2113 188 IRAAKRKEPIVFYGWSPHWMFG 209 (302)
T ss_pred HHHHhcCCCEEEEEeCchhhhh
Confidence 4555688888899999998864
No 54
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=41.36 E-value=1.6e+02 Score=29.00 Aligned_cols=151 Identities=17% Similarity=0.073 Sum_probs=73.6
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccc--cCceeeccChhHHHHhCCHHH-HHHHHHH-Hhhhh--ccc
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPEL--AGRISMVNSPREVIVAGGKIA-VQQNLAL-LANQV--RLF 307 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~l--kgkI~~~~~~~~~~~~~G~d~-~~e~L~~-l~~~v--~~~ 307 (439)
+...+.....+++.+++. +-+||+||.+..- .+++.+-... .++.+. +...|.+ +.-.+ -.|
T Consensus 71 pv~~~~~~~~vl~v~~ds-------p~~t~~eli~~ak~~p~~~~~g~~g-----~g~~~hl~~~~l~~~~G~~~~~Vpy 138 (274)
T PF03401_consen 71 PVARIASDPNVLVVRADS-------PYKTLEELIEYAKANPGKLTFGSSG-----PGSSDHLAAALLAKAAGIKFTHVPY 138 (274)
T ss_dssp EEEEEEEEEEEEEEETTS-------S-SSHHHHHHHHHCSCCC-EEEESS-----TTSHHHHHHHHHHHHHT---EEEE-
T ss_pred eehhhhccceEEEEeCCC-------ccccHHHHHHHHHhCCCCeEEEecC-----CCchHHHHHHHHHHHhCCceEEEEe
Confidence 444455567788888874 6799999987532 3555442111 011111 1111211 11111 124
Q ss_pred Cc-hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeE---E----------ccC--C-Cc----eeeeeEEEEecCCCCc
Q 044097 308 DS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV---V----------VPK--S-GA----SLWADLWAIPAASRLE 366 (439)
Q Consensus 308 ~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~---~----------vP~--e-G~----~~~~~~~aI~k~a~~~ 366 (439)
.+ .+...++..|++.+++...+......+.+ ++.. . +|. | |. .....++.++++++..
T Consensus 139 ~G~~~~~~allgG~vd~~~~~~~~~~~~~~~G-~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp~~ 217 (274)
T PF03401_consen 139 DGGAEALTALLGGHVDAAFGSPGEALPYVEAG-DLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTPDE 217 (274)
T ss_dssp SSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTT-SEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-HH
T ss_pred CCccHHHHHHhCCeeeEEeecHHHHHHHHhCC-CceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCCHH
Confidence 43 45677888888888776555555544433 2221 0 231 2 32 1223467889988743
Q ss_pred ccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 367 TKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 367 e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
- .......|-+-+-++|.|..+.+. +..|..
T Consensus 218 ~---------~~~l~~a~~~~~~~pe~~~~~~~~---g~~~~~ 248 (274)
T PF03401_consen 218 I---------VDKLADAIKKALEDPEFQEFLEKM---GLEPVY 248 (274)
T ss_dssp H---------HHHHHHHHHHHHT-HHHHHHHHHH---TEEEEC
T ss_pred H---------HHHHHHHHHHHhCCHHHHHHHHHC---CCcCCC
Confidence 2 122344555556688888876543 445543
No 55
>COG1732 OpuBC Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane]
Probab=39.35 E-value=48 Score=33.43 Aligned_cols=92 Identities=24% Similarity=0.273 Sum_probs=52.6
Q ss_pred CEEEeeeecc-eEEEEEeCcccccCCCCCCCCcccccCc--cccCceeeccChhHHHH-hCCHHHHHHHHH-HHhhhhcc
Q 044097 232 KIWAAPYRWG-TMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELAGRISMVNSPREVIV-AGGKIAVQQNLA-LLANQVRL 306 (439)
Q Consensus 232 k~YgvP~~~~-~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lkgkI~~~~~~~~~~~-~~G~d~~~e~L~-~l~~~v~~ 306 (439)
-.|.-|+.++ +++++.+++.-++.| .+|..||-.- .++ .++.. ++.. .-|.....+... .+.+.++.
T Consensus 126 l~wl~p~~~nNTyA~av~~~~A~~~~---i~TiSDLak~~~~l~--~g~~~---eF~~R~DG~~~l~k~Yg~~~~~~~~~ 197 (300)
T COG1732 126 LVWLKPAGFNNTYALAVRKDVAEKYN---LETISDLAKHSNQLK--LGADS---EFAERADGLPALQKAYGFDFKPDLRT 197 (300)
T ss_pred EEEecccCCCcceEEEecHHHHHHhC---CccHHHHHHhhhhce--ecCCh---hhhccccccHHHHHHhCCccCCCcee
Confidence 4587888654 899999999999976 5899998652 121 22111 1110 112222211111 11111333
Q ss_pred cCchHHHHHhhcCCeEEEEEccccH
Q 044097 307 FDSTHYLKAFGIGDVWVAVGWSSDV 331 (439)
Q Consensus 307 ~~~~~~~~~f~~Ge~~~~i~ws~~~ 331 (439)
++..-..+++.+|++.++..|+.+.
T Consensus 198 m~~gl~y~Al~~g~~d~~~~YsTDg 222 (300)
T COG1732 198 MDGGLTYQALKNGTVDAADAYSTDG 222 (300)
T ss_pred cCchHHHHHHHcCCCCeEeeccccc
Confidence 3333455899999999988887765
No 56
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=34.96 E-value=3.5e+02 Score=25.33 Aligned_cols=79 Identities=13% Similarity=0.114 Sum_probs=45.0
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhh--hhcccCc-h
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLAN--QVRLFDS-T 310 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~--~v~~~~~-~ 310 (439)
|.-||.....+++++++. ..+++|+||... +|++..... ..+.+.+..+ .+..+.+ +
T Consensus 103 fs~p~~~~~~~~~~~~~~------~~~~~~~dL~g~----~I~v~~g~~----------~~~~l~~~~~~~~i~~~~~~~ 162 (247)
T PRK09495 103 FSDGYYKSGLLVMVKANN------NDIKSVKDLDGK----VVAVKSGTG----------SVDYAKANIKTKDLRQFPNID 162 (247)
T ss_pred ccchheecceEEEEECCC------CCCCChHHhCCC----EEEEecCch----------HHHHHHhcCCCCceEEcCCHH
Confidence 556777777888888763 247888887431 466543211 1122332222 2223333 3
Q ss_pred HHHHHhhcCCeEEEEEccccHH
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVL 332 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~ 332 (439)
+...++.+|++.+++.......
T Consensus 163 ~~~~~L~~grvDa~i~~~~~~~ 184 (247)
T PRK09495 163 NAYLELGTGRADAVLHDTPNIL 184 (247)
T ss_pred HHHHHHHcCceeEEEeChHHHH
Confidence 5678899999998886543333
No 57
>PRK03577 acid shock protein precursor; Provisional
Probab=32.80 E-value=34 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=16.0
Q ss_pred chhhHHHHHHHHHhhcccccccCCCCCCC
Q 044097 68 LPLQLASSSVLLFLGFGARICSAGPTQLP 96 (439)
Q Consensus 68 ~~~~~~~~s~~~~~~~~~~ac~~~~~~~~ 96 (439)
|++-|+ ..++.+||++..++.+++..++
T Consensus 1 MKKVLA-lvVAa~~glSs~AFAA~taa~~ 28 (102)
T PRK03577 1 MKKVLA-LVVAAAMGLSSAAFAAETATTA 28 (102)
T ss_pred ChHHHH-HHHHHHHHhhHHHHhcccccCC
Confidence 566333 3444447888667776664443
No 58
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=32.53 E-value=26 Score=25.52 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=14.0
Q ss_pred chhhHHHHHHHHHhhcccccccCCCC
Q 044097 68 LPLQLASSSVLLFLGFGARICSAGPT 93 (439)
Q Consensus 68 ~~~~~~~~s~~~~~~~~~~ac~~~~~ 93 (439)
|||.+++..+++++.+.+.||.-..|
T Consensus 2 mKk~i~~i~~~l~~~~~l~~CnTv~G 27 (48)
T PRK10081 2 VKKTIAAIFSVLVLSTVLTACNTTRG 27 (48)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 56655554444444555668954333
No 59
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=32.10 E-value=2.5e+02 Score=27.90 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=0.0
Q ss_pred cchhhHHHHHHHHHhhcccccccCCCC-CCCCCccccccccccccccccccchhhH-HHhhhccccccccceeEEEEeCC
Q 044097 67 KLPLQLASSSVLLFLGFGARICSAGPT-QLPLTPAVNQQDQLLDQDTEQKEDEKLN-QEFENWKWKTYALTVPLRVVSLQ 144 (439)
Q Consensus 67 ~~~~~~~~~s~~~~~~~~~~ac~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~a~~~w~~~~~~~~~~L~v~~w~ 144 (439)
++.+.++++++++++.++..+|++... .-.....++...+| ++ .....-+-+.+ +|.+..+.
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~I~vg~~~~p~a~i------------le~~~k~~~~k~Gi----~l~i~~Ft 65 (268)
T COG1464 2 KKLKKLALALVALLALAACGAAAAKATKTIKVGATPGPHAEI------------LEVVVKPALKKKGL----DLKIVEFT 65 (268)
T ss_pred chHHHHHHHHHHHHHHHhhhhhccccCCcEEEeecCCchHHH------------HHHHHHHHHHhcCc----eEEEEEec
Q ss_pred CCccH-----------------HHHHHHHhhcCCeEEEEEeeecccccccceEecC-------------------chhHH
Q 044097 145 NSVPQ-----------------SWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTP-------------------FNKLS 188 (439)
Q Consensus 145 ~~~~~-----------------~li~~Fek~~GI~V~~~~~~~~s~~~~~~dv~~~-------------------~~~~~ 188 (439)
+|..+ ..++.|.+++|-++......+-..-+.|.+=.-+ ..-+.
T Consensus 66 DY~~PN~AL~~gdiDaN~FQH~pyL~~~~k~~~~~Lv~vg~~~i~Pmg~YSkk~ksl~el~~GatIaiPNDpsN~gRAL~ 145 (268)
T COG1464 66 DYVQPNEALADGDIDANAFQHKPYLDQFNKEHGGKLVAVGNTHIEPMGLYSKKYKSLAELKDGATIAIPNDPTNEGRALL 145 (268)
T ss_pred CCcchhHHHhcCCccchhhhchHHHHHHHHHcCCCEEEEeeEEeccceecchhcCcHhhCCCCCEEECCCCCCchhHHHH
Q ss_pred HHHHCCCcc
Q 044097 189 FAIKKRFIE 197 (439)
Q Consensus 189 ~~i~~Gll~ 197 (439)
.+.++|+|.
T Consensus 146 lL~~aGLIk 154 (268)
T COG1464 146 LLQKAGLIK 154 (268)
T ss_pred HHHHCCcEE
No 60
>PF03202 Lipoprotein_10: Putative mycoplasma lipoprotein, C-terminal region; InterPro: IPR004890 This domain is found along with a central domain (IPR004984 from INTERPRO) in a group of Mycoplasma lipoproteins of unknown function.
Probab=31.72 E-value=43 Score=29.83 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.7
Q ss_pred eeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcH
Q 044097 354 ADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQT 391 (439)
Q Consensus 354 ~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~ 391 (439)
++.++|-++.+..+ ++++|++|+++.
T Consensus 6 PsLIGIhaNekeD~------------aTkkFv~Wll~~ 31 (135)
T PF03202_consen 6 PSLIGIHANEKEDK------------ATKKFVNWLLNS 31 (135)
T ss_pred CceeeeccCccccH------------HHHHHHHHHHcC
Confidence 45688989888766 999999999875
No 61
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=27.93 E-value=37 Score=27.79 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHhhcccccccCC
Q 044097 68 LPLQLASSSVLLFLGFGARICSAG 91 (439)
Q Consensus 68 ~~~~~~~~s~~~~~~~~~~ac~~~ 91 (439)
||+.+.+.++++.+.+ +.||++.
T Consensus 1 mk~klll~aviLs~~L-LaGCAs~ 23 (85)
T PRK09973 1 MKTIFTVGAVVLATCL-LSGCVNE 23 (85)
T ss_pred CchhHHHHHHHHHHHH-HHHcCCc
Confidence 5666666666665544 4589875
No 62
>PF00123 Hormone_2: Peptide hormone; InterPro: IPR000532 A number of polypeptidic hormones, mainly expressed in the intestine or the pancreas, belong to a group of structurally related peptides [, ]. Once such hormone, glucagon is widely distributed and produced in the alpha-cells of pancreatic islets []. It affects glucose metabolism in the liver [] by inhibiting glycogen synthesis, stimulating glycogenolysis and enchancing gluconeogenesis. It also increases mobilisation of glucose, free fatty acids and ketone bodies, which are metabolites produced in excess in diabetes mellitus. Glucagon is produced, like other peptide hormones, as part of a larger precursor (preproglucagon), which is cleaved to produce glucagon, glucagon-like protein I and glucagon-like protein II []. The structure of glucagon itself is fully conserved in all known mammalian species []. Other members of the structurally similar group include glicentin precursor, secretin, gastric inhibitory protein, vasoactive intestinal peptide (VIP), prealbumin, peptide HI-27 and growth hormone releasing factor.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1T5Q_A 2OBU_A 2QKH_B 2L70_A 2L71_A 2B4N_A 1GCN_A 1D0R_A 3IOL_B 2RRI_A ....
Probab=25.15 E-value=51 Score=21.27 Aligned_cols=11 Identities=0% Similarity=0.419 Sum_probs=9.3
Q ss_pred HHHHHHHHHhc
Q 044097 380 LIHQWIEFCLQ 390 (439)
Q Consensus 380 aA~~FI~fllS 390 (439)
+|++||+||++
T Consensus 18 aak~fl~~L~~ 28 (28)
T PF00123_consen 18 AAKKFLQWLMN 28 (28)
T ss_dssp HHHHHHHHHCH
T ss_pred HHHHHHHHHhC
Confidence 89999999864
No 63
>COG1910 Periplasmic molybdate-binding protein/domain [Inorganic ion transport and metabolism]
Probab=23.08 E-value=2.1e+02 Score=27.65 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=68.7
Q ss_pred cceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCH----HHHHHHHHHHhhhhccc-----Cch
Q 044097 240 WGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGK----IAVQQNLALLANQVRLF-----DST 310 (439)
Q Consensus 240 ~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~----d~~~e~L~~l~~~v~~~-----~~~ 310 (439)
.-.++++..+...+ -.++|+||.+.. +.+.|-.+. .|. |.....+..+...+..| ++.
T Consensus 74 ~Re~Gl~v~~gnpk-----~i~~~edl~~~d----~~fVNR~rG----SGTR~LlD~~L~~~~~~~~~I~GY~~e~~th~ 140 (223)
T COG1910 74 LREQGLMVQKGNPK-----NISSLEDLLRKD----LRFVNRNRG----SGTRILLDELLGELNILPDSIKGYSDEATTHD 140 (223)
T ss_pred eeeeeeEEecCCCC-----ccccHHHHhhcC----cEEEecCCC----ccHHHHHHHHHHHcCcCchhcCCccccccccH
Confidence 34566666666633 258999998832 333332220 011 11111122222333333 334
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE-ccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHh
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCL 389 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~-vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fll 389 (439)
....++++|++.++++- ...++ ...++|+ +-.| -..+.|.+..-.++ .-++|++=|-
T Consensus 141 avA~aVa~G~AD~GvGl----r~~A~-~~gL~Fipl~~E-----~YD~virke~~~~~------------~vr~fi~~L~ 198 (223)
T COG1910 141 AVASAVASGRADAGVGL----RHAAE-KYGLDFIPLGDE-----EYDFVIRKERLDKP------------VVRAFIKALK 198 (223)
T ss_pred HHHHHHHcCCCCccccH----HHHHH-HcCCceEEcccc-----eEEEEEehhHccCH------------HHHHHHHHhc
Confidence 56789999999998862 22222 2356664 2222 12477888776666 8999999999
Q ss_pred cHHhhHHH
Q 044097 390 QTARALPF 397 (439)
Q Consensus 390 S~e~q~~~ 397 (439)
|.+...++
T Consensus 199 s~~~~~~l 206 (223)
T COG1910 199 SEGFAANL 206 (223)
T ss_pred cccccccC
Confidence 96555555
No 64
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=22.37 E-value=49 Score=33.35 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=14.4
Q ss_pred chhhHHHHHHHHHhhcccccccCC
Q 044097 68 LPLQLASSSVLLFLGFGARICSAG 91 (439)
Q Consensus 68 ~~~~~~~~s~~~~~~~~~~ac~~~ 91 (439)
||+.++++.+++++.++++||++.
T Consensus 1 ~kkk~~~~~~~~~~~~~lagC~~~ 24 (310)
T PRK01326 1 MKKKLIAGAVTLLSVATLAACSKT 24 (310)
T ss_pred CchhHHHHHHHHHHHHHHHHhCCC
Confidence 455555555555555556799753
No 65
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions. PBPs have two cell-membrane translocation functions: bind substrate, and interact with the membrane bound complex. A diverse group of periplasmic transport receptors for lysine/arginine/ornithine (LAO), glutamine, histidine, sulfate, phosphate, molybdate, and methanol are included in the PBPb CD.
Probab=21.85 E-value=3.3e+02 Score=23.59 Aligned_cols=128 Identities=16% Similarity=0.148 Sum_probs=69.5
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHh--hhhcccCc-
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLA--NQVRLFDS- 309 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~--~~v~~~~~- 309 (439)
+..|+.....+++.+++. +..+++|| +| +|++..... .. ..+.+.. .....+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~-------~~~~~~dl-----~g~~i~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~ 135 (218)
T cd00134 78 FSDPYYKSGQVILVKKGS-------PIKSVKDL-----KGKKVAVQKGST-------AE---KYLKKALPEAKVVSYDDN 135 (218)
T ss_pred CcccceeccEEEEEECCC-------CCCChHHh-----CCCEEEEEcCch-------HH---HHHHHhCCcccEEEeCCH
Confidence 445777778888998874 33466665 44 355431110 00 1122221 11222333
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHcC-CCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHH
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKRM-SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFC 388 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~-~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fl 388 (439)
++..+++.+|++.+++.+...+.....+. .++.++-+.. ......+++.....+++ ....|-+++
T Consensus 136 ~~~~~~l~~g~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~------------l~~~~~~~l 201 (218)
T cd00134 136 AEALAALENGRADAVIVDEIALAALLKKHPPELKIVGPSI--DLEPLGFGVAVGKDNKE------------LLDAVNKAL 201 (218)
T ss_pred HHHHHHHHcCCccEEEeccHHHHHHHHhcCCCcEEecccc--CCCccceEEEEcCCCHH------------HHHHHHHHH
Confidence 45778999999999888877766655443 3444432210 11122355556665655 777777777
Q ss_pred h----cHHhhHHH
Q 044097 389 L----QTARALPF 397 (439)
Q Consensus 389 l----S~e~q~~~ 397 (439)
. +.+.+..+
T Consensus 202 ~~~~~~g~~~~i~ 214 (218)
T cd00134 202 KELRADGELKKIS 214 (218)
T ss_pred HHHHhCccHHHHH
Confidence 6 45544443
No 66
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=20.75 E-value=3.1e+02 Score=28.90 Aligned_cols=183 Identities=15% Similarity=0.229 Sum_probs=98.4
Q ss_pred HHHHHHHhhcCCeEEEEEeeecccccccceEecCchhHHHHHHCCCcccccccccchhhcccchhHHHhhhcCCCcccCC
Q 044097 150 SWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDP 229 (439)
Q Consensus 150 ~li~~Fek~~GI~V~~~~~~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~ 229 (439)
++.++|++.-|+++++. .....+++|+.+.-+... ++..|++.+=.. .+. +.+
T Consensus 49 elak~Fa~yLgV~Lki~--~~~n~dqLf~aL~ng~~D---L~Aagl~~~~~~-------------l~~---------~~~ 101 (473)
T COG4623 49 ELAKAFADYLGVKLKII--PADNIDQLFDALDNGNAD---LAAAGLLYNSER-------------LKN---------FQP 101 (473)
T ss_pred HHHHHHHHHhCCeEEEE--ecCCHHHHHHHHhCCCcc---eecccccCChhH-------------hcc---------cCC
Confidence 79999999999999987 344445555554433322 355566644221 110 111
Q ss_pred CCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHhh--h-hc
Q 044097 230 RGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLAN--Q-VR 305 (439)
Q Consensus 230 dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~--~-v~ 305 (439)
|-.| ..-+..++|++.-. -|++..+| +| .|.+.... . ..+.++.++. + ..
T Consensus 102 -gP~y----~svs~qlVyRkG~~------Rp~~l~~L-----~g~~i~v~~gs---------~-~~~~l~~lk~~kyP~l 155 (473)
T COG4623 102 -GPTY----YSVSQQLVYRKGQY------RPRSLGQL-----KGRQITVAKGS---------A-HVEDLKLLKETKYPEL 155 (473)
T ss_pred -CCce----ecccHHHHhhcCCC------CCCCHHHc-----cCceeeccCCc---------H-HHHHHHHHHHhhcchh
Confidence 3223 23345788988753 47888776 45 34443211 1 1222333332 1 01
Q ss_pred cc------CchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEc--cCCCceeeeeEEEEecCCCCcccccCCCCCCC
Q 044097 306 LF------DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV--PKSGASLWADLWAIPAASRLETKQIGGQVRGP 377 (439)
Q Consensus 306 ~~------~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~v--P~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~ 377 (439)
.| ...+...+++.|++...+.-+..+...+.-.|++.+.+ -.+... .|.++.+..+ .
T Consensus 156 ~~k~d~~~~~~dLle~v~~Gkldytiads~~is~~q~i~P~laVafd~tde~~v----~Wy~~~~dd~-t---------- 220 (473)
T COG4623 156 IWKVDDKLGVEDLLEMVAEGKLDYTIADSVEISLFQRVHPELAVAFDLTDEQPV----AWYLPRDDDS-T---------- 220 (473)
T ss_pred hhhhcccccHHHHHHHHhcCCcceeeeccHHHHHHHHhCccceeeeecccccCc----eeeccCCchH-H----------
Confidence 11 12367788999999998887766665555566666543 223222 4667775433 2
Q ss_pred HHHHHHHHHHHh---cHHhhHHHHhhcC
Q 044097 378 SPLIHQWIEFCL---QTARALPFKQEVI 402 (439)
Q Consensus 378 ~~aA~~FI~fll---S~e~q~~~a~~~~ 402 (439)
+-...++|+- .+--+..+-++++
T Consensus 221 --L~a~ll~F~~~~~e~g~larleeky~ 246 (473)
T COG4623 221 --LSAALLDFLNEAKEDGLLARLEEKYL 246 (473)
T ss_pred --HHHHHHHHHHHhhcchHHHHHHHHHh
Confidence 4445555554 4555555555553
No 67
>PRK06760 hypothetical protein; Provisional
Probab=20.48 E-value=1.8e+02 Score=28.02 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=28.6
Q ss_pred HHHHHHHHhhc----CCeEEEEEeeecccccccceEecCchhHHHHHHCCCcccccc
Q 044097 149 QSWVKDFMRSQ----GKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAE 201 (439)
Q Consensus 149 ~~li~~Fek~~----GI~V~~~~~~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~ 201 (439)
+.+++.|.+.+ -.+|+.. ..++ -..++++......++++|+|..-+.
T Consensus 43 ~~I~~~yKd~tke~~~y~vK~~-----~~~~-kkvLim~ksTAekmvKkgllRkrdn 93 (223)
T PRK06760 43 SPIINRYQEITKENEVFSVKKG-----EVGN-GQVLILNESTAQALIKEKVFRKRDN 93 (223)
T ss_pred HHHHHHHHhhhhhhhheeeEee-----eEcC-cEEEEEEhHHHHHHHhccceeeccC
Confidence 57888886653 2333332 1111 1245567777888999999987653
Done!