Query 044097
Match_columns 439
No_of_seqs 163 out of 1269
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:55:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 100.0 6.1E-36 2.1E-40 297.5 22.2 268 132-428 7-298 (333)
2 4eqb_A Spermidine/putrescine A 100.0 3.4E-34 1.2E-38 283.9 20.3 264 135-428 8-295 (330)
3 3ttm_A Polyamine transport pro 100.0 1.3E-33 4.5E-38 280.8 18.9 270 135-428 7-313 (346)
4 3ttn_A Polyamine transport pro 100.0 2.9E-33 1E-37 276.9 19.0 270 135-428 4-309 (340)
5 1pot_A POTD, spermidine/putres 100.0 2.4E-31 8.1E-36 262.6 22.0 263 135-424 3-288 (325)
6 4i1d_A ABC transporter substra 100.0 4.9E-30 1.7E-34 252.7 19.4 263 136-436 3-299 (324)
7 3rpw_A ABC transporter; struct 100.0 6.3E-30 2.1E-34 256.3 17.4 271 137-438 34-335 (365)
8 1a99_A POTF, putrescine-bindin 100.0 3.8E-30 1.3E-34 255.6 15.2 265 136-424 4-306 (344)
9 4edp_A ABC transporter, substr 100.0 1.3E-29 4.5E-34 250.2 16.9 257 136-426 35-319 (351)
10 4euo_A ABC transporter, substr 100.0 1.7E-29 5.8E-34 249.3 15.2 253 137-427 2-283 (320)
11 2v84_A Spermidine/putrescine A 100.0 3.3E-28 1.1E-32 242.6 20.7 245 135-406 24-296 (343)
12 3pu5_A Extracellular solute-bi 99.9 2.7E-27 9.2E-32 234.0 16.2 258 135-427 5-296 (333)
13 3e13_X Putative iron-uptake AB 99.9 3.5E-25 1.2E-29 216.6 22.1 251 136-423 2-287 (322)
14 1xvx_A YFUA; periplasmic iron 99.9 3.3E-24 1.1E-28 209.9 21.5 243 135-410 4-273 (312)
15 2pt1_A Iron transport protein; 99.9 4E-24 1.4E-28 211.3 20.8 254 135-424 18-304 (334)
16 1q35_A Iron binding protein FB 99.9 1.1E-23 3.7E-28 206.6 23.8 252 136-424 2-284 (320)
17 4hs7_A Bacterial extracellular 99.9 2.2E-24 7.4E-29 220.3 19.4 248 135-410 40-344 (420)
18 3c9h_A ABC transporter, substr 99.9 1.6E-24 5.3E-29 217.0 16.4 241 135-410 33-304 (355)
19 3uor_A ABC transporter sugar b 99.9 2.4E-24 8.1E-29 223.3 16.4 256 135-410 29-344 (458)
20 2qry_A Thiamine-binding peripl 99.9 3.7E-24 1.3E-28 212.2 16.4 246 135-423 22-298 (330)
21 2voz_A FUTA2, periplasmic iron 99.9 9.5E-24 3.3E-28 209.3 19.0 248 136-423 34-315 (346)
22 1nnf_A Iron-utilization peripl 99.9 7.2E-23 2.5E-27 199.8 22.4 241 138-410 2-269 (309)
23 3quf_A Extracellular solute-bi 99.9 2.1E-23 7.2E-28 212.1 19.1 249 135-409 29-343 (414)
24 1y9u_A Putative iron binding p 99.9 4.5E-22 1.5E-26 195.4 23.0 248 135-423 5-291 (323)
25 2xd3_A MALX, maltose/maltodext 99.9 8.4E-23 2.9E-27 208.5 16.6 244 136-409 35-340 (416)
26 3k01_A Acarbose/maltose bindin 99.9 1.4E-22 4.7E-27 206.1 16.7 254 135-410 27-339 (412)
27 4dxb_A RG13, maltose-binding p 99.9 2.4E-22 8.1E-27 217.8 15.6 245 136-409 5-304 (637)
28 2gha_A Maltose ABC transporter 99.9 5.3E-21 1.8E-25 192.8 20.6 245 135-409 2-305 (382)
29 1elj_A Maltodextrin-binding pr 99.9 1.7E-20 5.9E-25 188.9 23.7 249 135-410 5-308 (381)
30 4hw8_A Bacterial extracellular 99.9 4E-21 1.4E-25 196.0 18.4 247 135-410 40-344 (420)
31 1urs_A Maltose-binding protein 99.9 5.8E-21 2E-25 193.7 19.5 246 135-410 29-329 (402)
32 2zyo_A Solute-binding protein; 99.9 2E-20 7E-25 189.2 22.6 247 136-410 19-323 (397)
33 2heu_A Sugar ABC transporter, 99.9 3.4E-21 1.2E-25 195.6 15.0 249 135-410 18-335 (401)
34 2gh9_A Maltose/maltodextrin-bi 99.9 2E-20 6.8E-25 188.8 20.5 247 136-410 1-310 (386)
35 3n94_A Fusion protein of malto 99.9 1.9E-20 6.4E-25 195.0 20.8 247 135-409 6-306 (475)
36 3ob4_A Conglutin, maltose ABC 99.9 1.3E-20 4.3E-25 198.4 19.5 247 135-409 4-304 (500)
37 3oo8_A ABC transporter binding 99.9 4.5E-21 1.5E-25 194.9 15.5 252 135-410 27-343 (415)
38 4g68_A ABC transporter; transp 99.8 1.1E-20 3.7E-25 195.5 17.8 244 135-400 62-378 (456)
39 3iot_A Maltose-binding protein 99.8 1.5E-20 5.2E-25 194.4 18.8 247 135-409 4-304 (449)
40 3mq9_A Bone marrow stromal ant 99.8 3E-20 1E-24 194.1 20.7 247 135-409 18-318 (471)
41 4h1g_A Maltose binding protein 99.8 1.7E-20 5.9E-25 205.9 18.5 238 136-400 6-297 (715)
42 3oai_A Maltose-binding peripla 99.8 4.6E-20 1.6E-24 192.0 20.7 247 135-409 4-304 (507)
43 4exk_A Maltose-binding peripla 99.8 3.2E-20 1.1E-24 195.2 19.6 239 135-400 8-300 (487)
44 1mh3_A Maltose binding-A1 home 99.8 4.6E-20 1.6E-24 188.2 19.8 246 135-409 4-303 (421)
45 3py7_A Maltose-binding peripla 99.8 6.1E-20 2.1E-24 194.0 20.6 247 135-409 5-305 (523)
46 3thi_A Protein (thiaminase I); 99.8 3.4E-20 1.2E-24 185.4 17.7 237 137-399 2-296 (371)
47 3osr_A Maltose-binding peripla 99.8 6.2E-20 2.1E-24 199.5 20.6 247 135-409 40-340 (653)
48 2xz3_A Maltose ABC transporter 99.8 7.4E-20 2.5E-24 190.8 20.1 246 135-409 5-304 (463)
49 1hsj_A Fusion protein consisti 99.8 8.6E-20 2.9E-24 190.4 20.6 246 135-409 4-303 (487)
50 3i3v_A Probable secreted solut 99.8 3E-21 1E-25 195.6 9.2 268 135-424 7-344 (405)
51 2b3f_A Glucose-binding protein 99.8 1.4E-20 4.6E-25 191.1 13.7 252 137-410 2-319 (400)
52 3o3u_N Maltose-binding peripla 99.8 7.3E-20 2.5E-24 193.5 19.9 247 135-409 4-304 (581)
53 1y4c_A Maltose binding protein 99.8 1.3E-19 4.4E-24 191.1 21.2 246 135-409 4-303 (494)
54 3csg_A MBP, maltose-binding pr 99.8 1E-19 3.4E-24 188.8 20.0 245 136-409 3-301 (461)
55 4b3n_A Maltose-binding peripla 99.8 4.2E-20 1.4E-24 198.9 17.5 238 136-400 19-310 (602)
56 2vgq_A Maltose-binding peripla 99.8 1.2E-19 4.1E-24 189.5 20.5 246 135-409 19-318 (477)
57 3h3g_A Fusion protein of malto 99.8 1.4E-19 4.6E-24 192.1 21.0 247 135-409 6-306 (539)
58 2z8f_A Galacto-N-biose/lacto-N 99.8 9E-20 3.1E-24 185.7 18.5 241 135-396 15-320 (412)
59 3mp6_A MBP, SGF29, maltose-bin 99.8 8.5E-20 2.9E-24 193.0 18.3 247 135-409 5-305 (522)
60 2w7y_A FCSSBP, probable sugar 99.8 1.3E-20 4.3E-25 192.9 11.4 238 149-409 60-351 (430)
61 3omb_A Extracellular solute-bi 99.8 1.4E-20 5E-25 198.5 12.1 242 136-398 40-383 (535)
62 2zxt_A Maltose-binding peripla 99.8 1.1E-19 3.6E-24 189.7 18.3 246 135-409 4-303 (465)
63 1r6z_P Chimera of maltose-bind 99.8 2.6E-19 9E-24 188.4 20.4 246 135-409 5-304 (509)
64 1eu8_A Trehalose/maltose bindi 99.8 1.2E-19 4E-24 184.3 16.5 253 136-410 4-335 (409)
65 3f5f_A Maltose-binding peripla 99.8 1.7E-19 5.9E-24 195.9 18.4 247 135-409 4-304 (658)
66 3h4z_A Maltose-binding peripla 99.8 1.9E-19 6.4E-24 192.7 18.1 246 136-409 5-304 (568)
67 2uvj_A TOGB, ABC type periplas 99.8 4.1E-19 1.4E-23 180.2 19.1 252 135-409 5-326 (408)
68 3dm0_A Maltose-binding peripla 99.8 7.3E-19 2.5E-23 189.9 17.9 238 136-400 5-296 (694)
69 4aq4_A SN-glycerol-3-phosphate 99.8 8.4E-19 2.9E-23 177.1 16.7 254 137-410 7-332 (419)
70 3osq_A Maltose-binding peripla 99.8 4.2E-18 1.5E-22 185.4 19.2 120 135-269 40-171 (661)
71 2nvu_B Maltose binding protein 99.8 1.9E-18 6.7E-23 191.8 15.0 239 135-400 8-300 (805)
72 4gqo_A LMO0859 protein; virule 99.8 1.9E-18 6.6E-23 176.2 11.9 256 135-410 29-357 (433)
73 1sbp_A Sulfate-binding protein 99.7 1.2E-15 3.9E-20 148.7 17.6 211 148-409 17-264 (310)
74 3a09_A ALGQ1; sugar binding pr 99.6 4.7E-16 1.6E-20 160.6 11.7 230 150-398 30-346 (490)
75 3vlv_A ALGQ1; sugar binding pr 99.6 8.5E-15 2.9E-19 153.4 13.1 244 135-397 10-345 (502)
76 3cg1_A UPF0100 protein PF0080; 99.6 9.1E-15 3.1E-19 142.6 11.7 152 234-399 83-290 (296)
77 3r26_A Molybdate-binding perip 99.5 7.1E-13 2.4E-17 125.8 17.5 209 136-404 7-234 (237)
78 3cfx_A UPF0100 protein MA_0280 99.5 8.1E-13 2.8E-17 129.2 17.0 218 136-404 5-293 (296)
79 3cij_A UPF0100 protein AF_0094 99.5 1.1E-12 3.9E-17 127.9 16.5 218 136-404 5-292 (295)
80 3gzg_A Molybdate-binding perip 99.4 4.6E-12 1.6E-16 122.0 16.3 206 137-404 24-250 (253)
81 2hxw_A Major antigenic peptide 99.4 2.1E-12 7.1E-17 120.9 11.6 201 136-399 1-226 (237)
82 3cfz_A UPF0100 protein MJ1186; 99.3 2.9E-11 9.9E-16 117.8 15.0 218 135-404 4-289 (292)
83 1atg_A MODA, periplasmic molyb 99.2 2.5E-10 8.5E-15 104.4 17.0 146 235-407 74-230 (231)
84 3k6v_A Solute-binding protein 99.1 1.7E-09 5.9E-14 109.2 16.8 237 136-423 43-351 (354)
85 4gd5_A Phosphate ABC transport 98.2 3.4E-05 1.1E-09 74.3 15.7 153 234-408 105-278 (279)
86 4i62_A Amino acid ABC transpor 94.4 1 3.5E-05 40.8 15.0 110 234-362 121-234 (269)
87 2yln_A Putative ABC transporte 93.2 2.8 9.5E-05 39.1 15.8 107 234-362 137-247 (283)
88 3muq_A Uncharacterized conserv 92.9 0.13 4.3E-06 48.6 5.8 52 339-398 182-233 (237)
89 2yjp_A Putative ABC transporte 89.4 8 0.00027 35.9 14.7 89 234-344 137-229 (291)
90 3lr1_A Tungstate ABC transport 85.5 1.2 4E-05 41.9 6.0 53 338-398 182-234 (236)
91 2v25_A Major cell-binding fact 82.3 20 0.00068 31.7 12.8 109 234-363 121-232 (259)
92 3kn3_A Putative periplasmic pr 82.0 4 0.00014 38.4 8.2 52 339-398 187-238 (242)
93 4h1x_A PBP 2, phosphate-bindin 78.0 2.9 9.8E-05 39.8 5.8 27 380-409 117-143 (265)
94 1ii5_A SLR1257 protein; membra 77.7 26 0.0009 30.3 11.9 132 234-398 87-222 (233)
95 3qax_A Probable ABC transporte 76.5 41 0.0014 29.8 17.9 109 233-362 109-223 (268)
96 3kbr_A Cyclohexadienyl dehydra 74.5 18 0.0006 31.8 9.8 110 234-361 94-207 (239)
97 1xt8_A Putative amino-acid tra 72.6 57 0.002 29.7 16.0 88 234-343 126-217 (292)
98 1pc3_A Phosphate-binding prote 64.1 20 0.00068 35.1 8.4 34 233-266 96-140 (350)
99 2vha_A Periplasmic binding tra 63.1 87 0.003 28.3 13.2 88 233-337 102-192 (287)
100 2pyy_A Ionotropic glutamate re 61.0 42 0.0014 28.7 9.2 134 234-398 81-218 (228)
101 3k4u_A Binding component of AB 60.4 87 0.003 27.3 11.5 110 233-362 83-198 (245)
102 4f3p_A Glutamine-binding perip 60.1 60 0.002 28.6 10.4 134 234-402 102-241 (249)
103 3h7m_A Sensor protein; histidi 57.7 90 0.0031 26.7 12.2 85 233-337 88-175 (234)
104 2pvu_A ARTJ; basic amino acid 56.0 1.1E+02 0.0038 27.3 11.8 131 234-398 120-258 (272)
105 4ecf_A ABC-type phosphate tran 51.3 14 0.00047 34.6 4.5 28 380-409 219-246 (264)
106 3cvg_A Putative metal binding 51.0 17 0.00058 34.3 5.2 35 353-399 235-270 (294)
107 3c5t_B Exendin-4, exenatide; l 49.1 10 0.00034 24.2 2.1 14 379-392 9-22 (31)
108 4exl_A PBP 1, phosphate-bindin 48.7 18 0.0006 33.8 4.8 28 380-409 219-246 (265)
109 2rc8_A Glutamate [NMDA] recept 43.8 1.7E+02 0.0057 26.8 10.9 120 234-365 136-262 (294)
110 3del_B Arginine binding protei 40.8 1.8E+02 0.006 25.1 11.0 111 233-367 89-205 (242)
111 2a5s_A N-methyl-D-aspartate re 40.7 1.5E+02 0.0053 26.9 10.1 140 234-401 125-277 (284)
112 3un6_A Hypothetical protein sa 40.2 11 0.00037 36.2 1.9 31 308-338 190-220 (341)
113 3g3k_A Glutamate receptor, ion 38.0 2.1E+02 0.007 25.1 10.9 145 234-402 102-252 (259)
114 4h5g_A Amino acid ABC superfam 37.3 1.9E+02 0.0065 25.3 9.9 110 234-363 94-208 (243)
115 2l63_A GLP-2, glucagon-like pe 35.3 22 0.00074 23.0 2.1 14 379-392 17-30 (33)
116 3hv1_A Polar amino acid ABC up 35.0 2.1E+02 0.007 25.2 9.8 90 233-338 99-193 (268)
117 1wdn_A GLNBP, glutamine bindin 34.3 2.1E+02 0.0071 24.0 9.4 85 234-338 81-168 (226)
118 2g49_C Glucagon preproprotein; 33.6 23 0.00079 22.1 1.9 11 380-390 18-28 (29)
119 1jrj_A Exendin-4; Trp-CAGE, GL 32.4 25 0.00085 23.6 2.1 14 379-392 17-30 (39)
120 1t5q_A Gastric inhibitory poly 31.6 25 0.00085 22.2 1.8 11 380-390 18-28 (30)
121 3iol_B Glucagon; receptor-liga 30.0 30 0.001 21.9 2.1 13 379-391 17-29 (31)
122 4ef1_A Pheromone COB1/lipoprot 28.4 36 0.0012 31.9 3.3 85 308-408 157-244 (246)
123 4dz1_A DALS D-alanine transpor 28.1 3E+02 0.01 24.1 9.7 128 234-398 108-245 (259)
124 3ksx_A Nitrate transport prote 27.7 3.6E+02 0.012 24.8 10.7 36 308-344 166-201 (324)
125 1twy_A ABC transporter, peripl 27.5 68 0.0023 28.7 5.0 26 380-408 251-276 (290)
126 2b4n_A Gastric inhibitory poly 25.3 35 0.0012 23.2 1.8 14 379-392 17-30 (42)
127 4got_A Methionine-binding lipo 24.1 56 0.0019 30.7 3.7 85 310-408 161-247 (249)
128 3kzg_A Arginine 3RD transport 23.7 1.4E+02 0.0048 25.7 6.3 136 149-339 31-170 (237)
129 1ujx_A Polynucleotide kinase 3 23.1 42 0.0014 28.0 2.3 29 30-58 44-83 (119)
130 3mpk_A Virulence sensor protei 21.3 4.2E+02 0.014 23.3 11.4 108 234-362 111-223 (267)
131 2f5x_A BUGD; periplasmic bindi 20.4 3.6E+02 0.012 25.6 8.9 139 239-399 109-274 (312)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=100.00 E-value=6.1e-36 Score=297.46 Aligned_cols=268 Identities=22% Similarity=0.362 Sum_probs=212.7
Q ss_pred cccceeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeecccc----------cccceEecCchhHHHHHHCCCcccccc
Q 044097 132 YALTVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASID----------GIVNNLSTPFNKLSFAIKKRFIEPIAE 201 (439)
Q Consensus 132 ~~~~~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s~~----------~~~~dv~~~~~~~~~~i~~Gll~pl~~ 201 (439)
.+.+.+|+||+|++++.++++++|++++||+|+++. +++.+ ..+|.+.++..++.+++++|+|+|++.
T Consensus 7 ~a~~~~L~vy~W~~y~~~~~i~~Fek~tGIkV~~~~--~~s~e~~~~kl~ag~~~~DVv~~~~~~~~~~~~~gll~~ld~ 84 (333)
T 4gl0_A 7 YAGSNTLTIYNWGDYIDPSLITKFEKETGIKVIYQT--FDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENLLIPLDH 84 (333)
T ss_dssp ---CCEEEEEEETTCSCHHHHHHHHHHHCCEEEEEE--ESCHHHHHHHHHTCSSCCSEECCBHHHHHHHHHTTCBCCCCG
T ss_pred CCCCCEEEEEeCCccCCHHHHHHHHHHHCCEEEEEe--CCCHHHHHHHHHcCCCCCeEEEeCHHHHHHHHHcCCcccccc
Confidence 334568999999999999999999999999999972 22221 225555566788999999999999998
Q ss_pred cccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccCh
Q 044097 202 AEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSP 281 (439)
Q Consensus 202 ~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~ 281 (439)
.. .+++.++++.+ . ...+++ |+.|++||.+++.+|+||++++++. +|+||+||++|+++|++.+.++.
T Consensus 85 ~~-~~n~~~~~~~~---~----~~~~~~-~~~y~vp~~~~~~~i~yn~~~~~~~---~~~sw~dl~dp~~kg~~~~~~~~ 152 (333)
T 4gl0_A 85 SK-LPNEKYLDPRF---M----DLSFDD-DNKYSMPYFWGTLGIIYNKEMFPDK---NFDTWNALFDPELKNQILLIDGA 152 (333)
T ss_dssp GG-CGGGGGBCGGG---S----SCGGGG-GGSSEEEEEEEEEEEEEETTTCTTC---CTTSGGGGGCGGGTTCEEEESCH
T ss_pred cc-ccccccCCHHH---h----hhccCC-CCceEeceeeeeeeeeechhhcccC---CcccHHhhcCHHhhhccccCCcH
Confidence 75 23344444433 1 123443 6669999999999999999999873 78999999999999999999887
Q ss_pred hHHHH----hCC-------H---HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccC
Q 044097 282 REVIV----AGG-------K---IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPK 347 (439)
Q Consensus 282 ~~~~~----~~G-------~---d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~ 347 (439)
...+. ..| . ..+.+.+..+++++..+++++..+.|++|+++|++.|+++...++..+.++.+++|+
T Consensus 153 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~ 232 (333)
T 4gl0_A 153 REVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPK 232 (333)
T ss_dssp HHHHHHHHHHTTCCTTCCCHHHHHHHHHHHHHHGGGEEEEESTTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCS
T ss_pred HHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhhccccceecchhhhhhhhccchheehhhhHHHHHHHhhccccccccCC
Confidence 76542 222 1 234556667777777777778889999999999999999998888889999999999
Q ss_pred CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCCC
Q 044097 348 SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPS 427 (439)
Q Consensus 348 eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~~ 427 (439)
+|+..|+++++|+++++|++ +|++||+||+|+|+|..+++. .+|++|+. .+...+|+++++....
T Consensus 233 eG~~~~~~~~~I~k~a~n~e------------~A~~fi~fllspe~q~~~~~~-~gy~~~n~--~a~~~l~~~~~~~~~~ 297 (333)
T 4gl0_A 233 DGSNLWFDNMVIPKTAKNVD------------GAHKFINFMLKPENAAINAEY-VGYATPNA--KAVELLPKEISSDERF 297 (333)
T ss_dssp SCEEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCBCCBH--HHHHHSCHHHHTCTTT
T ss_pred CCCccccceEEEEcCCCCHH------------HHHHHHHHhcCHHHHHHHHHH-hCCCCccH--HHHHhCCHHHHhCccc
Confidence 99999999999999999999 999999999999999999975 68888876 4455689998876444
Q ss_pred C
Q 044097 428 V 428 (439)
Q Consensus 428 ~ 428 (439)
.
T Consensus 298 ~ 298 (333)
T 4gl0_A 298 Y 298 (333)
T ss_dssp S
T ss_pred C
Confidence 3
No 2
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=100.00 E-value=3.4e-34 Score=283.89 Aligned_cols=264 Identities=19% Similarity=0.318 Sum_probs=212.2
Q ss_pred ceeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeeccc----------ccccceEecCchhHHHHHHCCCccccccccc
Q 044097 135 TVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASI----------DGIVNNLSTPFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 135 ~~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s~----------~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
..+|+|+.|++++.++++++|++++||+|+++. +.+. ...+|.+..+..++..++++|+|+||+...+
T Consensus 8 ~~~l~v~~w~~~~~~~~~~~Fe~~~gi~V~~~~--~~~~~~~~~kl~a~~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~ 85 (330)
T 4eqb_A 8 SQKLVIYNWGDYIDPELLTQFTEETGIQVQYET--FDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLDYSKI 85 (330)
T ss_dssp CCEEEEEEETTCSCHHHHHHHHHHHCCEEEEEE--ESSHHHHHHHHHHCCSCCSEECCBHHHHHHHHHTTCBCCCCGGGC
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHCCEEEEEe--CCCHHHHHHHHhcCCCCCCEEEECHHHHHHHHHCCCccCCChhhC
Confidence 458999999999989999999999999999972 2221 1224444556778999999999999997532
Q ss_pred chhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHH
Q 044097 205 QDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREV 284 (439)
Q Consensus 205 ~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~ 284 (439)
+++.++.+.+ +. ..++ +|++||+||.+++.+|+||+++|++ +|+||+||++++++|++++.++....
T Consensus 86 -~~~~~~~~~~---~~----~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~----~p~tw~el~~~~~~g~~~~~~~~~~~ 152 (330)
T 4eqb_A 86 -EGIENIGPEF---LN----QSFD-PGNKFSIPYFWGTLGIVYNETMVDE----APEHWDDLWKLEYKNSIMLFDGAREV 152 (330)
T ss_dssp -CCGGGBCGGG---SS----CTTS-GGGSSCEEEEEEEEEEEEEGGGCSS----CCCSGGGGGCGGGTTCEEEESCHHHH
T ss_pred -cChhhCCHHH---Hc----cCcC-CCCeEEEEEecccEEEEEEHHHcCC----CCCCHHHHhChHhcCCeEEecCHHHH
Confidence 2334444433 22 2234 3788999999999999999999975 89999999999999999998877665
Q ss_pred HH----hCCH----------HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCc
Q 044097 285 IV----AGGK----------IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGA 350 (439)
Q Consensus 285 ~~----~~G~----------d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~ 350 (439)
+. ..|. ..+.+.|.++++++..++.++..+.|.+|+++|++.|++.+..+.+.+.++.+++|++|.
T Consensus 153 ~~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~ 232 (330)
T 4eqb_A 153 LGLGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEAS 232 (330)
T ss_dssp HHHHHHHTTCCTTCCCHHHHHHHHHHHHTTGGGEEEEESTTHHHHHHTTCCSEEEEEHHHHHHHHHHCTTEEEECCTTCE
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhHhheeCcHHHHHHHhcCCEEEEEechHHHHHHHhhCCCeEEEeCCCcc
Confidence 42 2332 356777888888877777778889999999999999999998888888899999999999
Q ss_pred eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCCCC
Q 044097 351 SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPSV 428 (439)
Q Consensus 351 ~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~~~ 428 (439)
..|.++++|+++++|++ +|++||+||+|+|.|..+++. .||.+|+. .+...+++++++....+
T Consensus 233 ~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~~~~~~~~-~g~~p~~~--~a~~~l~~~~~~~~~~~ 295 (330)
T 4eqb_A 233 NLWFDNMVIPKTVKNQD------------SAYAFINFMLKPENALQNAEY-VGYSTPNL--PAKELLPEETKEDKAFY 295 (330)
T ss_dssp EEEEEEEBCBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCBCSBH--HHHHTSCHHHHTCTTTS
T ss_pred ceEEEEEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHHHh-hCCCChhH--HHHHhCCHHHhhCcccC
Confidence 99999999999999999 999999999999999999875 57766665 44557899988764443
No 3
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=100.00 E-value=1.3e-33 Score=280.77 Aligned_cols=270 Identities=21% Similarity=0.337 Sum_probs=211.7
Q ss_pred ceeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeeccc----------ccccceEecCchhHHHHHHCCCccccccccc
Q 044097 135 TVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASI----------DGIVNNLSTPFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 135 ~~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s~----------~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
..+|+|++|++++.++++++|++++||+|+++. +++. ...+|.+..+..++..++++|+|+||+...
T Consensus 7 ~~~l~v~~w~~~~~~~~~~~Fe~~~gi~V~~~~--~~~~~~~~~kl~ag~~~~Dv~~~~~~~~~~~~~~g~l~~ld~~~- 83 (346)
T 3ttm_A 7 NKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDV--YDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSK- 83 (346)
T ss_dssp TTEEEEEEESSCSCTTHHHHHHHHHCCEEEEEE--ESCHHHHHHHHHHSCCSCSEECCBHHHHHHHHHTTCBCCCCGGG-
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHCCEEEEEe--cCCHHHHHHHHHcCCCCCcEEEeCHHHHHHHHHCCCcccCChhh-
Confidence 357999999999888999999999999999972 2221 122444456678899999999999998653
Q ss_pred chhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCccccc-CCCC-CCCCcccccCccccCc-----eee
Q 044097 205 QDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQN-HNLA-PIEDWKDPWWPELAGR-----ISM 277 (439)
Q Consensus 205 ~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~-~Gl~-~P~TW~DL~dp~lkgk-----I~~ 277 (439)
.+++.++.+.+.... ..++ +|++|++|+.+++.+|+||+++|++ +|++ +|+||+||++++++++ +.+
T Consensus 84 ~~~~~~~~~~~~~~~-----~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~~~G~~~~p~tw~dl~~~~~~~k~~~~~~~~ 157 (346)
T 3ttm_A 84 LPNWKNLNKDLMHTL-----EVSD-PGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSF 157 (346)
T ss_dssp CGGGGGBCHHHHHHH-----TTTS-GGGCSEEEEEEEEEEEEECHHHHHHHHCTTCCTTSTHHHHSHHHHHHHTTTCEEE
T ss_pred CcChhhcCHHHHhcc-----ccCC-CCCeEEeEEeeccEEEEEEhHHhhhhccCCCCCCcHHHHhChhhhccccCCcEEE
Confidence 233445555443211 1123 3888999999999999999999999 9987 9999999999876554 567
Q ss_pred ccChhHHHH----hCCH----------HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHH------c
Q 044097 278 VNSPREVIV----AGGK----------IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK------R 337 (439)
Q Consensus 278 ~~~~~~~~~----~~G~----------d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~------~ 337 (439)
.+++..++. ..|. ..+.+.|.++++++..|.+++..+.|.+|+++|++.|++.+..... .
T Consensus 158 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T 3ttm_A 158 LDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKN 237 (346)
T ss_dssp CSCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHGGGCCEECSSTHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTS
T ss_pred ECCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhHhhheeCChhHHHHHhcCCeEEEEeccHHHHHHHHhhhhccc
Confidence 777665542 2343 3567788888888877777778899999999999999998876643 2
Q ss_pred CCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCC
Q 044097 338 MSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKL 417 (439)
Q Consensus 338 ~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~l 417 (439)
+.++.+++|++|...|.++++|+++++|++ +|++||+|++|+|.|..+++. .||.+|+. .+...+
T Consensus 238 ~~~~~~~~P~~g~~~~~~~~~I~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~-~g~~p~~~--~a~~~~ 302 (346)
T 3ttm_A 238 KVTVKYNIPKEGAGSFFDMVAIPKDAENTE------------GALAFVNFLMKPEIMAEITDV-VQFPNGNA--AATPLV 302 (346)
T ss_dssp SCCCEEECCTTCEEEEEEEEECBTTCSCSH------------HHHHHHHHHTSHHHHHHHHHH-HCCCBSBT--TTGGGS
T ss_pred CCceEEEEcCCCceEEEEEEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHHHh-hCCCCccH--HHHhhC
Confidence 568999999999999999999999999999 999999999999999999976 57766665 445568
Q ss_pred CHHHhcCCCCC
Q 044097 418 PEELLKGKPSV 428 (439)
Q Consensus 418 p~el~~~~~~~ 428 (439)
++++++.....
T Consensus 303 ~~~~~~~~~~~ 313 (346)
T 3ttm_A 303 SEAIRNDPGIY 313 (346)
T ss_dssp CHHHHTCTTTS
T ss_pred CHHHhhCCCcC
Confidence 99988765543
No 4
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=100.00 E-value=2.9e-33 Score=276.86 Aligned_cols=270 Identities=23% Similarity=0.367 Sum_probs=209.5
Q ss_pred ceeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeeccc----------ccccceEecCchhHHHHHHCCCccccccccc
Q 044097 135 TVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASI----------DGIVNNLSTPFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 135 ~~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s~----------~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
+.+|+|++|++++.++++++|++++||+|+++. +++. ...+|.+..+..++..++++|+|+||+...
T Consensus 4 ~~~l~v~~w~~~~~~~~~~~Fe~~~gi~V~~~~--~~~~~~~~~~l~ag~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~- 80 (340)
T 3ttn_A 4 GSSLHIYNWTDYIAPTTLKDFTKESGIDVSYDV--FDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSK- 80 (340)
T ss_dssp --CEEEEEETTCSCTTHHHHHHHHHCCCEEEEE--ESSHHHHHHHHHTSCCCCSEECCBHHHHHHHHHTTCBCCCCGGG-
T ss_pred CCEEEEEeccccCCHHHHHHHHHHHCCEEEEEe--cCCHHHHHHHHHcCCCCCcEEEECHHHHHHHHHCCCcCcCChhh-
Confidence 458999999999988999999999999999972 2221 122444445677899999999999999653
Q ss_pred chhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCccccc-CCCCCCCCcccccCccccCc-----eeec
Q 044097 205 QDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQN-HNLAPIEDWKDPWWPELAGR-----ISMV 278 (439)
Q Consensus 205 ~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~-~Gl~~P~TW~DL~dp~lkgk-----I~~~ 278 (439)
.+++.++.+.+.... ..++ +|++|++|+.+++.+|+||+++|++ +|+++|+||+||++++++++ +.+.
T Consensus 81 ~~~~~~~~~~~~~~~-----~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~a~G~~~P~tw~dl~~~~~~~k~~~~~~~~~ 154 (340)
T 3ttn_A 81 LPNWKNLDPALLKQL-----EVSD-PGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFM 154 (340)
T ss_dssp CGGGGGSCHHHHHHH-----TTTS-GGGCSEEEEEEEEEEEEEEHHHHHHHHCSCCCCSTHHHHCHHHHHHHGGGCEEEC
T ss_pred CcChhhcCHHHHhcc-----cccC-CCCeEEeEEEeeeeEEEEehHHhccccCCCCCccHHHHhChhhhccccCCeEEEE
Confidence 223444544443211 1122 4889999999999999999999999 69999999999999876654 5666
Q ss_pred cChhHHHH----hCCH----------HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHH------cC
Q 044097 279 NSPREVIV----AGGK----------IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVK------RM 338 (439)
Q Consensus 279 ~~~~~~~~----~~G~----------d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~------~~ 338 (439)
+++...+. ..|. ..+.+.|.++++++..+.+++..+.|.+|+++|++.|++.+..... .+
T Consensus 155 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (340)
T 3ttn_A 155 DSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKG 234 (340)
T ss_dssp SCHHHHHHHHHHHTTSCTTCCCHHHHHHHHHHHHHHGGGCCEECSSHHHHHHHHTSCSEEEEEHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhHHhheeCCchHHHHHhcCCeEEEEeccHHHHHHHHhhhhccCC
Confidence 66665442 2343 3567788888888877777778899999999999999988876543 25
Q ss_pred CCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCC
Q 044097 339 SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLP 418 (439)
Q Consensus 339 ~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp 418 (439)
.++.+++|++|...|.++++|+++++|++ +|++||+||+|+|.|..+++. .|+.+|+. .+...++
T Consensus 235 ~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~q~~~~~~-~g~~p~~~--~a~~~~~ 299 (340)
T 3ttn_A 235 IDIQYVIPKEGANLWFDLMAIPADAKAAD------------NAYAFIDYLLRPEVIAKVSDY-VGYANAIP--GARPLMD 299 (340)
T ss_dssp CCEEEECCTTCCEEEEEEEECBTTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-HCCEESCG--GGGGGSC
T ss_pred CceEEEeCCCccceeEEEEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHHHh-cCCCCccH--HHHhhCC
Confidence 68999999999999999999999999999 999999999999999999876 57766654 4555689
Q ss_pred HHHhcCCCCC
Q 044097 419 EELLKGKPSV 428 (439)
Q Consensus 419 ~el~~~~~~~ 428 (439)
+++++.....
T Consensus 300 ~~~~~~~~~~ 309 (340)
T 3ttn_A 300 KSVSDSEEVY 309 (340)
T ss_dssp HHHHTBTTTS
T ss_pred HHHHhCCCCC
Confidence 9988765543
No 5
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=99.98 E-value=2.4e-31 Score=262.55 Aligned_cols=263 Identities=23% Similarity=0.370 Sum_probs=201.9
Q ss_pred ceeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCcccccccccc
Q 044097 135 TVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 135 ~~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~ 205 (439)
+.+|+|+.|++++.++++++|++++||+|+++.. +.++....+|.+..+..++..++++|+|+||+... .
T Consensus 3 ~~~l~v~~w~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~~~~kl~a~~~~~pDv~~~~~~~~~~~~~~g~l~~l~~~~-~ 81 (325)
T 1pot_A 3 NNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKSK-L 81 (325)
T ss_dssp CEEEEEEEESSSSCTTHHHHHHHHHCEEEEEEEESCHHHHHHHHTTCSSSCSSBBCCBGGGHHHHHHHTCBCCCCTTS-C
T ss_pred CCEEEEEeccccCCHHHHHHHHHHHCCEEEEEecCCHHHHHHHHhcCCCCCCcEEEECHHHHHHHHHCCCcCCCChhh-C
Confidence 3579999999988889999999999999999731 11111122434445667899999999999998743 1
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHH
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVI 285 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~ 285 (439)
+++.++.+.+ +. ...+ +|++||+|+.+++.+|+||+++|+++ +|+||+||++++++|++++.++....+
T Consensus 82 ~~~~~~~~~~---~~----~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~~---p~~tw~dl~~~~~~g~~~~~~~~~~~~ 150 (325)
T 1pot_A 82 TNFSNLDPDM---LN----KPFD-PNNDYSIPYIWGATAIGVNGDAVDPK---SVTSWADLWKPEYKGSLLLTDDAREVF 150 (325)
T ss_dssp TTGGGBCGGG---SC----CTTS-TTCSSCEEEEEEEEEEEEETTTSCTT---TCCSSGGGGSGGGTTCEEECSCHHHHH
T ss_pred cChhhcCHHH---hc----cCCC-CCCcEEeeEeeeeEEEEEEHHHcCCC---CCCCHHHHcCHHhcCcEEEEcCHHHHH
Confidence 2233444332 21 1223 48889999999999999999999974 579999999999999999877665443
Q ss_pred H----hCCH----------HHHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCce
Q 044097 286 V----AGGK----------IAVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS 351 (439)
Q Consensus 286 ~----~~G~----------d~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~ 351 (439)
. ..|. .++.+.|.++.+++..+..++..+.|.+|+++|++.|++.+....+++.++++++|++|..
T Consensus 151 ~~~l~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~~~P~~g~~ 230 (325)
T 1pot_A 151 QMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGI 230 (325)
T ss_dssp HHHHHHTTCCTTCCCHHHHHHHHHHHHHTGGGEEEECSSCTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCE
T ss_pred HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCchHhHHHhcCCEEEEEeecHHHHHHhhcCCCeEEEECCCcce
Confidence 2 2342 3567778888877655665667889999999999999988876666667899999998888
Q ss_pred eeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcC
Q 044097 352 LWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKG 424 (439)
Q Consensus 352 ~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~ 424 (439)
.++++++|+++++|++ +|++||+|++|+|.|..+++. .|+.+|+. .+...+++++++.
T Consensus 231 ~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~q~~~~~~-~g~~p~~~--~~~~~l~~~~~~~ 288 (325)
T 1pot_A 231 FWMDSLAIPANAKNKE------------GALKLINFLLRPDVAKQVAET-IGYPTPNL--AARKLLSPEVAND 288 (325)
T ss_dssp EEEEEEBCBTTCTTHH------------HHHHHHHHHHSHHHHHHHHHH-HCCCCSBS--TTTTTSCHHHHTC
T ss_pred EEEEEEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHh-hCCCCccH--HHHHhcCHHHHhC
Confidence 8999999999999999 999999999999999999875 46766654 3445678888754
No 6
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=99.97 E-value=4.9e-30 Score=252.69 Aligned_cols=263 Identities=13% Similarity=0.164 Sum_probs=200.8
Q ss_pred eeEEEEeCCCCcc----HHHHHHHHhhcCCeEEEEEeeec-----------ccccccceEecCchhHHHHHHCCCccccc
Q 044097 136 VPLRVVSLQNSVP----QSWVKDFMRSQGKRLKFQMNLCA-----------SIDGIVNNLSTPFNKLSFAIKKRFIEPIA 200 (439)
Q Consensus 136 ~~L~v~~w~~~~~----~~li~~Fek~~GI~V~~~~~~~~-----------s~~~~~~dv~~~~~~~~~~i~~Gll~pl~ 200 (439)
.+|+|++|++... ++++++|++++||+|+++. .+ ++...+|.+..+..++..++++|+|+||+
T Consensus 3 ~~L~v~~~~g~~~~~~~~~~~~~F~~~~gi~V~~~~--~~~~~~~l~~~~~~g~~~~Dv~~~~~~~~~~~~~~g~l~~l~ 80 (324)
T 4i1d_A 3 AQITFVSQGGAYQAAQTVAILDPSAKKLGITINQDS--IPDAWPAIKTQVGSGKPIWDVVDTPTGYCLRGGEQGLIEKLD 80 (324)
T ss_dssp CEEEEEECCHHHHHHHHHHTHHHHHHHHTCEEEEEE--CSCCHHHHHHHHHTTCCSCCEEEEEHHHHHHHHHTTCBCCCC
T ss_pred CeEEEEeCCCcHHHHHHHHHHHHHHHHHCCEEEEec--CCCcHHHHHHHHHhCCCCeEEEECCHHHHHHHHHCCCcccCC
Confidence 4799999987643 5689999999999999973 11 11122444445667889999999999998
Q ss_pred ccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc-cccCceeecc
Q 044097 201 EAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP-ELAGRISMVN 279 (439)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp-~lkgkI~~~~ 279 (439)
... .+++.++.+.+ |+.|++|+..++.+|+||+++|++ ++|+||+||+++ +++|++++.+
T Consensus 81 ~~~-~~~~~~~~~~~---------------~~~y~vp~~~~~~~l~yn~~~~~~---~~P~tw~dl~~~~~~~g~~~~~~ 141 (324)
T 4i1d_A 81 FSK-IPNAAAMPEAY---------------RSPYSVSYEFYSSVLAYSQKTFPK---DAPNSWVDFWDVKKFPGRRALRN 141 (324)
T ss_dssp GGG-CHHHHTSCGGG---------------BCSSCEEEEEEEEEEEEETTTCSS---CCCCSHHHHHCTTTSCSCEEEES
T ss_pred hhh-CcChhhCCccc---------------ccCceeeeecceEEEEEehhhcCC---CCCCCHHHHhChhhcCCceeccC
Confidence 643 12223333321 345999999999999999999987 479999999999 8999999887
Q ss_pred ChhHHH----HhC----------CHHHHHHHHHHHhhhhcccC--chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeE
Q 044097 280 SPREVI----VAG----------GKIAVQQNLALLANQVRLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV 343 (439)
Q Consensus 280 ~~~~~~----~~~----------G~d~~~e~L~~l~~~v~~~~--~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~ 343 (439)
.+...+ ... +.+.+.+.|.++++++..++ .++..+.|.+|+++|++.|++.+....+.+.++.+
T Consensus 142 ~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~ 221 (324)
T 4i1d_A 142 HPIATLEAALMADGVAPDKLYPLDVDRAFKKLEEIKPHITVWWTSGAQSAQLLNDGEVDMEMAWNGRVSAVAKEGAKVSF 221 (324)
T ss_dssp SSTTHHHHHHHHTTCCGGGCCSCCHHHHHHHHHHHGGGCSEEECSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTTCSEEE
T ss_pred CchhHHHHHHHhcCCChhhcCHHHHHHHHHHHHHHhhhhhhhccCcchHHHHHhCCCEEEEecccHHHHHHHhcCCCeEE
Confidence 654433 122 23577888999988876553 34677899999999999999988877777888988
Q ss_pred EccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccC--CCHHH
Q 044097 344 VVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVK--LPEEL 421 (439)
Q Consensus 344 ~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~--lp~el 421 (439)
++| |...++++++|+++++|++ +|++||+|++|+|.|..+++. .++.+++. .+... +|+++
T Consensus 222 ~~~--g~~~~~~~~~i~k~s~~~~------------~A~~fi~fl~s~e~q~~~~~~-~~~~p~~~--~a~~~~~~~~~~ 284 (324)
T 4i1d_A 222 TYN--QGILQSTSLCILKGAPNLE------------TAVKFLNEAVDPVHQANLPLH-IDYGPGNP--KAFETNVIKPER 284 (324)
T ss_dssp EEE--EEEEEEEEEEEBTTCTTHH------------HHHHHHHHHTCHHHHHHGGGT-SSCEESSG--GGGGSSCSCHHH
T ss_pred Eec--CeeeeccEEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHh-CCCCCCCh--hhhhhcCCCHHH
Confidence 874 7788899999999999999 999999999999999999875 46654443 33333 89999
Q ss_pred hcCCCCCCchhhcCC
Q 044097 422 LKGKPSVDTNLIAGV 436 (439)
Q Consensus 422 ~~~~~~~~~~~~~~~ 436 (439)
.+..|..+.+..+-+
T Consensus 285 ~~~~~~~p~~~~~~~ 299 (324)
T 4i1d_A 285 AAQLPSEPANAAKQA 299 (324)
T ss_dssp HTTSTTSHHHHTTSE
T ss_pred HhhCCCChHHHhccc
Confidence 888776555544433
No 7
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=99.97 E-value=6.3e-30 Score=256.33 Aligned_cols=271 Identities=11% Similarity=0.093 Sum_probs=200.1
Q ss_pred eEEEEeCCCCc----cHHHHHHHHhhcCCeEEEEEe------eec---ccccccceEecCchhHHHHHHCCCcccccccc
Q 044097 137 PLRVVSLQNSV----PQSWVKDFMRSQGKRLKFQMN------LCA---SIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 137 ~L~v~~w~~~~----~~~li~~Fek~~GI~V~~~~~------~~~---s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~ 203 (439)
+|+|++|++.. .++++++|++++||+|+++.. +.+ ++...+|.+.....++..+++ |+|+||+...
T Consensus 34 ~l~v~~~~~~~~~~~~~~~~~~Fe~~~gi~V~~~~~~~~~~kl~~~~~~g~~~~Dv~~~~~~~~~~~~~-g~l~~l~~~~ 112 (365)
T 3rpw_A 34 VVIMQDPGGGYGDALRKVMYDPFEKETGIKVVTVQEARSGPRIKAQAEAGKAQWDLTFIFDQETKLLGD-CCLADIDYSK 112 (365)
T ss_dssp EEEEEECCHHHHHHHHHHTHHHHHHHHSCEEEEEECSCCHHHHHHHHHHTCCCCSBEEECHHHHHHTHH-HHBCCCCGGG
T ss_pred eEEEEecCCchhHHHHHHHHHHHHHhhCCEEEEecCCCcHHHHHHHHHcCCCCceEEEcCHHHHHHHhC-CCcccCChhh
Confidence 68899998653 357899999999999999832 000 111124444556677889999 9999998642
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc-cccCceeeccChh
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP-ELAGRISMVNSPR 282 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp-~lkgkI~~~~~~~ 282 (439)
+ +.++. .+...+. ... |+.|++|+.+++.+|+||+++|++. ++|+||+||+++ +++|++++.+...
T Consensus 113 ----~-~~~~~--~~~~~~~-~~~---~~~y~~p~~~~~~~l~ynk~~~~~~--~~P~tw~dl~~~~~~~g~~~~~~~~~ 179 (365)
T 3rpw_A 113 ----L-SESAH--KTLAAMP-DNL---KRKKGVALQVIGVGLVYNKDKFKGD--KAPQTWADFWDVKKFPGRRCMPAWPR 179 (365)
T ss_dssp ----S-CHHHH--HHHHTSC-GGG---EETTEEEEEEEEEEEEEETTTSCTT--SSCCSHHHHHCTTTSCSCEEEESSST
T ss_pred ----c-Cchhh--hhhhhcC-ccc---cCCeEEeeeeeeEEEEEEhhhcCCC--CCCCCHHHHhChhhCCCceeCCcCch
Confidence 1 21110 0000000 111 4569999999999999999999973 589999999999 8999999887654
Q ss_pred HHHH----hC----------CHHHHHHHHHHHhhhhcccC--chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEcc
Q 044097 283 EVIV----AG----------GKIAVQQNLALLANQVRLFD--STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVP 346 (439)
Q Consensus 283 ~~~~----~~----------G~d~~~e~L~~l~~~v~~~~--~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP 346 (439)
..+. .. +.+.+.+.|.++++++..++ ..+..+.|.+|+++|++.|++.+....+++.++++++|
T Consensus 180 ~~~~~~~~~~g~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~p 259 (365)
T 3rpw_A 180 FTFEAALMADGVTKDKLYPIDMDRALKKLKEIKPHVVKWWTTAAQPPQLILDGEADMCLAYTGSMSKLALEGAPIDLTFN 259 (365)
T ss_dssp THHHHHHHHTTCCTTSCCSCCHHHHHHHHHHHGGGEEEEECSTTHHHHHHHTTSCSEEEEEHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHcCCChhhcCchhHHHHHHHHHHHhhhcccccCCccHHHHHHHcCCeEEEEehhHHHHHHHhCCCCeEEeeC
Confidence 4331 11 34678889999998875553 34678899999999999999988877777888998887
Q ss_pred CCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccC-CCHHHhcCC
Q 044097 347 KSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVK-LPEELLKGK 425 (439)
Q Consensus 347 ~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~-lp~el~~~~ 425 (439)
|...++++++|+++++|++ +|++||+|++|+|.|..+++. .++ .|... .+... +|+++.+..
T Consensus 260 --g~~~~~~~~~i~k~s~~~~------------~A~~fi~~l~s~e~q~~~~~~-~~~-~P~~~-~a~~~~l~~~~~~~~ 322 (365)
T 3rpw_A 260 --QGFVYYDFFSIPKGAPNYD------------NALKLLSWRLDPKRAAQLTST-FPV-ALPSK-VVFDAATDKNIARYW 322 (365)
T ss_dssp --EEEEEEEEEECBTTCTTHH------------HHHHHHHHHTCHHHHHHHHHH-SCC-BCSCH-HHHHHCSCGGGGGGS
T ss_pred --CeeeeceEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-cCC-CCCCh-hHHhcCCCHHHHhhC
Confidence 6788899999999999999 999999999999999999875 455 45442 22222 788888888
Q ss_pred CCCCchhhcCCCC
Q 044097 426 PSVDTNLIAGVPP 438 (439)
Q Consensus 426 ~~~~~~~~~~~~~ 438 (439)
|..+.+..+-+++
T Consensus 323 ~~~p~~~~~~~~~ 335 (365)
T 3rpw_A 323 ANNPENVAKAIEW 335 (365)
T ss_dssp TTSHHHHHHSCCC
T ss_pred CCChHHHhcccCc
Confidence 8766665555444
No 8
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.97 E-value=3.8e-30 Score=255.60 Aligned_cols=265 Identities=22% Similarity=0.395 Sum_probs=196.1
Q ss_pred eeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeeccc----------ccccceEecCchhHHHHHHCCCcccccccccc
Q 044097 136 VPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCASI----------DGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 136 ~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s~----------~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~ 205 (439)
.+|+|+.|+++..++++++|++++||+|+++. ..+. ...+|.+..+..++..++++|+|+||+...+
T Consensus 4 ~~l~v~~w~~~~~~~~~~~F~~~~gi~V~~~~--~~~~~~~~~kl~a~~~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~- 80 (344)
T 1a99_A 4 KTLHIYNWSDYIAPDTVANFEKETGIKVVYDV--FDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLDKSKL- 80 (344)
T ss_dssp CEEEEEEETTCSCTTHHHHHHHHHCCEEEEEE--ESCHHHHHHHHHHCCCCCSEECCBHHHHHHHHHTTCBCCCCGGGC-
T ss_pred CeEEEEeccccCCHHHHHHHHHHHCCEEEEEe--cCCHHHHHHHHHcCCCCCcEEEECHHHHHHHHHCCCcccCChhhC-
Confidence 47999999998778999999999999999973 2211 1224334456678899999999999997531
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccC-CCC-CCCCcccccCccccCcee-----ec
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNH-NLA-PIEDWKDPWWPELAGRIS-----MV 278 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~-Gl~-~P~TW~DL~dp~lkgkI~-----~~ 278 (439)
+++.++.+. +++.. ..++ +|++||+|+.+++.+|+|||++|+++ |++ +|+||+||+++++++++. +.
T Consensus 81 ~~~~~~~~~---~~~~~--~~~~-~g~~y~vP~~~~~~~l~Ynkd~~~~alGl~~~p~tw~el~~~~~~~k~~~~g~~~~ 154 (344)
T 1a99_A 81 PEWKNLDPE---LLKLV--AKHD-PDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFL 154 (344)
T ss_dssp GGGGGBCHH---HHHHH--HTTS-GGGCSEEEEEEEEEEEEEEHHHHHHHHCTTCCTTSTHHHHSHHHHHHHGGGCEEEC
T ss_pred cChhhcCHH---Hhhhh--hccC-CCCcEEeeEEeeeEEEEEEhHHcccccccCCCCCCHHHHcCHHhcCCccccccccc
Confidence 223334333 33210 0232 48899999999999999999999998 987 699999999976655443 44
Q ss_pred cChhHHH----HhCCH----------H-HHHHHHHHHhhhhcccCchHHHHHhhcCCeEEEEEccccHHHHHHc------
Q 044097 279 NSPREVI----VAGGK----------I-AVQQNLALLANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLPAVKR------ 337 (439)
Q Consensus 279 ~~~~~~~----~~~G~----------d-~~~e~L~~l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~------ 337 (439)
+.+...+ ...|. . .+.+.+.++.+++..++.++..+.|.+|+++|++.|++.+..+.+.
T Consensus 155 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~ 234 (344)
T 1a99_A 155 DAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKN 234 (344)
T ss_dssp SCHHHHHHHHHHHTTSCTTCCCHHHHHTHHHHHHHHHGGGCCEECSSTHHHHHHTTSCSEEEEEHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhccceeEecChhHHHHhhcCCEEEEEEccHHHHHHHHhccccCC
Confidence 5544433 13342 2 5667777787776556666778899999999999998877665442
Q ss_pred CCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCC
Q 044097 338 MSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKL 417 (439)
Q Consensus 338 ~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~l 417 (439)
+.++++++|++|...+.++++|+++++|++ +|++||+|++|+|.|..+++. .|+.+++. .+...+
T Consensus 235 ~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~q~~~~~~-~g~~p~~~--~~~~~~ 299 (344)
T 1a99_A 235 GVNVSFSIPKEGAMAFFDVFAMPADAKNKD------------EAYQFLNYLLRPDVVAHISDH-VFYANANK--AATPLV 299 (344)
T ss_dssp SCCEEEECCTTCEEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH-HCCEESBT--TTGGGS
T ss_pred CCceEEEECCCCceeEEEeeEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-hCCCCcch--HHHhhC
Confidence 457888899888888889999999999999 999999999999999999875 46655544 333347
Q ss_pred CHHHhcC
Q 044097 418 PEELLKG 424 (439)
Q Consensus 418 p~el~~~ 424 (439)
++++++.
T Consensus 300 ~~~~~~~ 306 (344)
T 1a99_A 300 SAEVREN 306 (344)
T ss_dssp CHHHHTC
T ss_pred CHHHhhC
Confidence 8888654
No 9
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=99.96 E-value=1.3e-29 Score=250.22 Aligned_cols=257 Identities=18% Similarity=0.226 Sum_probs=191.4
Q ss_pred eeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe--------eecccccccceEecCchhHHHHHHCCCccccccccc
Q 044097 136 VPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN--------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 136 ~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~--------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
.+|+|+.|++. +.++++++|++++||+|+++.. ..++....+|.+.....++..++++|+++|++...
T Consensus 35 ~~l~v~~~~~~~~~~~~~~~~~f~~~~gi~V~~~~~~~~~~~~kl~a~~~~~pDv~~~~~~~~~~~~~~g~l~~l~~~~- 113 (351)
T 4edp_A 35 KKLVVSTWGLNEDVLKETVFEPFAKEHGVEIVLDIGNNSERLTKMKNNPNSQIDITYLAESFAEQGVEAGIFDKLDYSK- 113 (351)
T ss_dssp -CEEEEECCTTHHHHHHHTHHHHHHHHTCCEEEEECCHHHHHHHHHHCTTCCCCEEEEEHHHHHHHHHHTCBCCCCGGG-
T ss_pred CeEEEEEccCcHHHHHHHHHHHHHHHHCCEEEEEeCCcHHHHHHHHhcCCCCCCEEEECcHHHHHHHHCCCcccCCchh-
Confidence 47888888654 3457899999999999999731 11122223444445667889999999999998643
Q ss_pred chhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChh--
Q 044097 205 QDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPR-- 282 (439)
Q Consensus 205 ~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~-- 282 (439)
.+++++..+.+. +.+|++|++|+..++.+++|||++ + ++|+||+||++++++|++++.+...
T Consensus 114 ---~~~~~~~~~~~~--------~~~g~~y~~P~~~~~~~l~ynkd~-~----~~p~tw~el~~~~~~g~~~~~~~~~~~ 177 (351)
T 4edp_A 114 ---IPNASEMNEKAK--------STVEAGYGPAYTLNSIGIVVDPSA-G----IEINSWEDLWKPELKNKIAIPDITTTN 177 (351)
T ss_dssp ---CGGGGGBCTTTH--------HHHHHTSSCEEEEEEEEEEECGGG-C----CCCCSGGGGGCGGGTTCEEEECTTSTT
T ss_pred ---CCChHHhhHHhh--------ccCCCeeEEEEEeeEEEEEEcCCC-C----CCCCCHHHHhChHhcCCeeecCccccc
Confidence 223333222111 223889999999999999999999 3 4899999999999999988764321
Q ss_pred -HHH-----HhCCH-------HHHHHHHHHHhhhhccc--CchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccC
Q 044097 283 -EVI-----VAGGK-------IAVQQNLALLANQVRLF--DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPK 347 (439)
Q Consensus 283 -~~~-----~~~G~-------d~~~e~L~~l~~~v~~~--~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~ 347 (439)
..+ ...|. ..+.+.+.++.++...+ ...+..+.|.+|+++|++.|++.+..+.+.+.++.+++|+
T Consensus 178 g~~~~~~~~~~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~P~ 257 (351)
T 4edp_A 178 GPAMVEIAAEKAGVDVKTDNGEAAFKELEALKPNVVKTYSKSSDLANMFSNGEIVAAVASDFAFGTISKAKPEVINVIPE 257 (351)
T ss_dssp HHHHHHHHHHHHTCCHHHHTTHHHHHHHHHHGGGEEEEECCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTTCEEECCT
T ss_pred chHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHhhhcccCChHHHHHHHHcCCEEEEecCcHHHHHHHhcCCCeeeeCCC
Confidence 111 11232 45677888888775433 2346778999999999999988887777778899999999
Q ss_pred CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCC
Q 044097 348 SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKP 426 (439)
Q Consensus 348 eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~ 426 (439)
+|...+.++++|+++++|++ +|++||+|++|+|.|..+++. . +..|...+ +.+++++++..+
T Consensus 258 ~g~~~~~~~~~i~~~s~~~~------------~A~~fi~~l~s~e~q~~~~~~-~-g~~P~~~~---~~~~~~~~~~~~ 319 (351)
T 4edp_A 258 SGTYLNFNTININKNSKNKD------------LAYEFINYALSKEVQEKTAKA-L-NESPVNKE---VKLSEEETKNLT 319 (351)
T ss_dssp TCCBEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-H-CCBCCBTT---CCCCTTTTTTSC
T ss_pred CCcccceeeEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHHHh-c-CCCCCcCC---ccCCHHHHhccC
Confidence 89888999999999999999 999999999999999999875 3 44666543 457888876644
No 10
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=99.96 E-value=1.7e-29 Score=249.35 Aligned_cols=253 Identities=12% Similarity=0.135 Sum_probs=194.7
Q ss_pred eEEEEeCCCCccH----HHHHHHHhhcCCeEEEEEe-----eec---ccccccceEecCchhHHHHHHCCCccccccccc
Q 044097 137 PLRVVSLQNSVPQ----SWVKDFMRSQGKRLKFQMN-----LCA---SIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 137 ~L~v~~w~~~~~~----~li~~Fek~~GI~V~~~~~-----~~~---s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
+|+|++|+++..+ +++++|++++||+|+++.. +.+ ++...+|.+..+..++..++++|+|+||+...+
T Consensus 2 ~l~v~~wgg~~~~~~~~~~~~~Fe~~~gi~V~~~~~~~~~kl~a~~~~g~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~ 81 (320)
T 4euo_A 2 DLVFSSWGGTTQDAQKAAWAEKFMVETGINVLQDGPTDYGKLKAMVEANGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVI 81 (320)
T ss_dssp CEEEECCCHHHHHHHHHHHHHHHHHHHSCCEEEECCCCHHHHHHHHHTTCCCCSEEEEEHHHHHHHTTTTCBCCCCTTTS
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHHCCEEEEeCCCCHHHHHHHHHcCCCCceEEEcCHHHHHHHHHCCCcccCChhhC
Confidence 6899999987544 5899999999999999720 000 111224444556678899999999999987531
Q ss_pred chhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc-cccCceeecc-Chh
Q 044097 205 QDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP-ELAGRISMVN-SPR 282 (439)
Q Consensus 205 ~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp-~lkgkI~~~~-~~~ 282 (439)
++.++.+.+ . +.|++|+.+++.+|+||+++|++ +|+||+||+++ +++|++++.+ +..
T Consensus 82 --~~~~~~~~~-----------~----~~y~~p~~~~~~~l~yn~~~~~~----~P~tw~dl~~~~~~~g~i~~~~~~~~ 140 (320)
T 4euo_A 82 --DKTKLDPRF-----------V----TDYSVGSFYYSFVIGCNVDSVSA----CPKSWADLFDTAKFPGKRTFYKWSAP 140 (320)
T ss_dssp --CGGGBCGGG-----------C----BTTBEEEEEEEEEEEECGGGSSC----CCCSHHHHTCTTTSCSCEEEECSSST
T ss_pred --ChhhCChhh-----------c----ccceeeeeeeeEEEEEEhhhhCC----CCCCHHHHhChhhCCCcEEEeCCCch
Confidence 223333221 1 23899999999999999999997 79999999998 4999999887 444
Q ss_pred HHH----HhC----------CHHHHHHHHHHHhhhhcccCc-hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccC
Q 044097 283 EVI----VAG----------GKIAVQQNLALLANQVRLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPK 347 (439)
Q Consensus 283 ~~~----~~~----------G~d~~~e~L~~l~~~v~~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~ 347 (439)
..+ ... +.+.+.+.|.++++++..+.+ ++..+.|.+|+++|++.|++.+....+.+.++++++
T Consensus 141 ~~~~~al~~~G~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-- 218 (320)
T 4euo_A 141 GVIEAALLADGVTADKLYPLDLDRAFKKLDTIKSDIIWWSGGAQSQQLIASAEAPFGSVWNGRMTALEQSGVKVETSW-- 218 (320)
T ss_dssp THHHHHHHHTTCCGGGCCSCCHHHHHHHHHTTGGGEEEECSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTCCCEEEE--
T ss_pred HHHHHHHHHcCCChhhcCHHHHHHHHHHHHHhhhceeEeCCCchHHHHHHcCCEEEEEeecHHHHHHHhCCCCeEEEe--
Confidence 333 122 345778888888888865644 467789999999999999999887777778888877
Q ss_pred CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcCCCC
Q 044097 348 SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKGKPS 427 (439)
Q Consensus 348 eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~~~~ 427 (439)
+|...++++++|+++++|++ +|++||+||+|+|.|..+++. .++.+++. .+...+|+++++..|.
T Consensus 219 ~g~~~~~~~~~i~k~s~~~e------------~A~~fi~fl~s~e~q~~~~~~-~~~~p~~~--~a~~~l~~~~~~~~p~ 283 (320)
T 4euo_A 219 AQNITAADSLVVPKGTKNKD------------AAMKFIALATSAQAQADMATA-TGYAPVNI--ESAKLMDPKIAKSLPD 283 (320)
T ss_dssp EEEEEEEEEEECBTTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-HSCBCSBT--TSGGGSCHHHHTTSGG
T ss_pred cCceeecceEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHHh-cCCCCCCH--HHHhhCCHHHHhhCCC
Confidence 68888999999999999999 999999999999999999875 46655444 4455689999877765
No 11
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=99.96 E-value=3.3e-28 Score=242.57 Aligned_cols=245 Identities=21% Similarity=0.267 Sum_probs=185.7
Q ss_pred ceeEEEEeCCCCccHHHHHHHHhhcCCeEEEEEeeecc----------cccccceEecCchhHHHHHHCCCccccccccc
Q 044097 135 TVPLRVVSLQNSVPQSWVKDFMRSQGKRLKFQMNLCAS----------IDGIVNNLSTPFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 135 ~~~L~v~~w~~~~~~~li~~Fek~~GI~V~~~~~~~~s----------~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
..+|+|+.|+++..++++++|++++||+|+++. ..+ +...+|.+.....++..++++|+|+||+...
T Consensus 24 ~~~l~v~~w~~~~~~~~~~~Fe~~~gi~V~~~~--~~~~~~~~~kl~ag~~~pDv~~~~~~~~~~~~~~g~l~~l~~~~- 100 (343)
T 2v84_A 24 QDVLYLYNWTYYTPTSLIKKFEQQYNVQVVYDD--YASNEDMFAKLSIGASGYDLVVPSGDFVSIMKRKHLLEKIDLSK- 100 (343)
T ss_dssp -CEEEEEEETTTSCHHHHHHHHHHHTCEEEEEE--ESCHHHHHHHHSSSCCSCSEECCBHHHHHHHHHTTCEECCCGGG-
T ss_pred CCeEEEEecccccCHHHHHHHHHHHCCEEEEEe--CCCHHHHHHHHHcCCCCCCEEEcCHHHHHHHHHCCCcccCChhh-
Confidence 347899999987778999999999999999873 221 1122333345567889999999999998742
Q ss_pred chhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHH
Q 044097 205 QDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREV 284 (439)
Q Consensus 205 ~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~ 284 (439)
.+++.++.+.+ +... .++ +|++|++|+..++.+|+|||++|++ +|+||+||++++++|++++.+.+...
T Consensus 101 ~~~~~~~~~~~---~~~~---~~~-~G~~y~vP~~~~~~~l~YNkd~~~~----~P~Tw~el~~~~~~g~i~~~~~~~~~ 169 (343)
T 2v84_A 101 IPNVQFIKESV---RARI---AYD-PKMEYSVPYYLGAAGIAVNKKAVPS----YARTWSIFSRKDLAYRMSMMDDMREV 169 (343)
T ss_dssp CGGGGGBCHHH---HHHC---TTS-TTCSSCEEEEEECCEEEEETTTCCS----CCSSGGGGGCGGGTTSEEECSCHHHH
T ss_pred CcChhhcCHHH---hccc---ccC-CCceEEeeeEeccEEEEEEhHhcCC----CCCCHHHHhCHHHcCeEEEECChHHH
Confidence 12334444433 2210 233 4889999999999999999999987 79999999999999999887655443
Q ss_pred H----HhCCH----------HHHHHHHHH-HhhhhcccCchHHHHHhhcCCeEEEEEccccHHH--HHHcCCCeeEEccC
Q 044097 285 I----VAGGK----------IAVQQNLAL-LANQVRLFDSTHYLKAFGIGDVWVAVGWSSDVLP--AVKRMSNVAVVVPK 347 (439)
Q Consensus 285 ~----~~~G~----------d~~~e~L~~-l~~~v~~~~~~~~~~~f~~Ge~~~~i~ws~~~~~--~~~~~~~v~~~vP~ 347 (439)
+ ...|. .++.+.|.+ +.+++..++.++..+.|.+|+++|++.|++.+.. ..+.+.++++++|.
T Consensus 170 ~~~~~~~~G~~~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~ 249 (343)
T 2v84_A 170 MGAALASLGYNVNTKNEQELAQAAILVTDHWKPNLVKFDSDGYAKSFASGDFVVAHGFAEAFFAETPEAMHEHIDFFIPQ 249 (343)
T ss_dssp HHHHHHHTTCCTTCCCHHHHHHHHHHHHHHTGGGEEEECSSSHHHHHHHTSCSEEEECHHHHHHHSCGGGGGGEEEECCT
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhhhheeCchHHHHHHhcCCEEEEEEecHHHHHHHHHhcCCCeeEEeeC
Confidence 3 12332 356677777 7776655555567889999999999998877665 44445678888998
Q ss_pred -CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCC
Q 044097 348 -SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGAS 406 (439)
Q Consensus 348 -eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~ 406 (439)
+|...+.++++|+++++|++ +|++||+|++|+|.|..+++. .|+.+
T Consensus 250 ~~g~~~~~~~~~I~~~s~~~~------------aA~~Fi~~l~s~e~q~~~~~~-~g~~P 296 (343)
T 2v84_A 250 DVASPVYVDSFCIPKGARNRD------------LAHAFINFFLEPAHYAEFLDT-FGFPS 296 (343)
T ss_dssp TTTCEEEEEEEBEETTCSCHH------------HHHHHHHHHTSHHHHHHHHHH-HTCCC
T ss_pred ccCcceeeeeeEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHHh-hCCCC
Confidence 88888889999999999999 999999999999999999865 35544
No 12
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=99.95 E-value=2.7e-27 Score=233.97 Aligned_cols=258 Identities=18% Similarity=0.229 Sum_probs=192.8
Q ss_pred ceeEEEEeCCCC----ccHHHHHHHHhhcCCeEEEEEe--------eecc-cccccceEecCchhHHHHHHCCCcccccc
Q 044097 135 TVPLRVVSLQNS----VPQSWVKDFMRSQGKRLKFQMN--------LCAS-IDGIVNNLSTPFNKLSFAIKKRFIEPIAE 201 (439)
Q Consensus 135 ~~~L~v~~w~~~----~~~~li~~Fek~~GI~V~~~~~--------~~~s-~~~~~~dv~~~~~~~~~~i~~Gll~pl~~ 201 (439)
..+|+|+.|++. +.++++++|++++||+|+++.. +.+. +...+|.+.....++..++++|+|+||+.
T Consensus 5 ~~~l~v~~~~g~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~~~kl~~~~~~~~~Dv~~~~~~~~~~~~~~g~l~~l~~ 84 (333)
T 3pu5_A 5 DDHIYVTSSGGSFLENVRKHMAEPFEKQSGVKVTLVPGTNPAHALKILSSRGTPPYDVAAFGGNDMYRLIRAKKLAQVDE 84 (333)
T ss_dssp TCEEEEEECCHHHHHHHHHHTHHHHHHHHCCEEEEEECCHHHHHHHHHHCCSSCSCSEEEECHHHHHHHHHTTCBCCCCT
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHHHHHHHCCEEEEecCCCHHHHHHHHhCcCCCCCCEEEEChHHHHHHHHCcCcccCCh
Confidence 347888888853 3457999999999999999521 1111 11225555567788999999999999996
Q ss_pred cccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCce----ee
Q 044097 202 AEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRI----SM 277 (439)
Q Consensus 202 ~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI----~~ 277 (439)
.. .+++.++.+.+ + +. .+.|++|+..++.+|+||+++|++ +|+||+||++++++|++ ++
T Consensus 85 ~~-~~~~~~~~~~~---~--------~~-~~~y~vP~~~~~~~l~ynkd~~~~----~P~tw~dl~~~~~~g~~~~~~~~ 147 (333)
T 3pu5_A 85 KS-VPSLADVPEKF---K--------AD-WEGCGSLYDYSSVGIAYRPDKIQG----GVKSWKEFVERTVAGEFGKQVFF 147 (333)
T ss_dssp TT-CGGGGGSCGGG---T--------GG-GTTSCEECCBEEEEEEECTTTSTT----CCSSHHHHHHHHHHTTTTTCEEE
T ss_pred hh-CCChhhCCHHH---H--------hc-cCCccceeEeeeeEEEEchhhcCC----CCCCHHHHhChhhCCCccccccc
Confidence 53 12334444332 2 11 023999999999999999999986 89999999999999998 87
Q ss_pred ccChh-----HHH----HhCC-----HHHHHHHHHHHhhhh-cccCc-hHHHHHhhcCCeEEEEEccccHHHHHHcCCC-
Q 044097 278 VNSPR-----EVI----VAGG-----KIAVQQNLALLANQV-RLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSN- 340 (439)
Q Consensus 278 ~~~~~-----~~~----~~~G-----~d~~~e~L~~l~~~v-~~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~- 340 (439)
.+... ..+ ...| ..++.+.|.++++++ ..+.+ .+..+.|.+|+++|++.|++.+....+.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~ 227 (333)
T 3pu5_A 148 NNLSSNVRGAEVLSMFGKIYGSGYGDIEASIATLERMKPHIFKFFTAFNDPVVLLTSGEGAIGPGWDGRTFIAEDSTKGM 227 (333)
T ss_dssp ECGGGTSSHHHHHHHHHHHHSSSTTCHHHHHHHHHHHGGGEEEEECSTTHHHHHHHHTSCSEEEEEHHHHHHHHHHTTTS
T ss_pred cCCcchhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcccccccCChHHHHHHHHcCCEEEEecccHHHHHHHhCCCCc
Confidence 65322 111 1223 246778888888887 33333 4667899999999999999888777776666
Q ss_pred eeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHH
Q 044097 341 VAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEE 420 (439)
Q Consensus 341 v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~e 420 (439)
+.+++|++|...+.++++|++++ |++ +|++||+|++|+|.|..+++. .++ .|...+ +.++++
T Consensus 228 ~~~~~P~~g~~~~~~~~~i~k~s-~~~------------~A~~Fi~~l~s~e~q~~~~~~-~g~-~P~~~~---~~~~~~ 289 (333)
T 3pu5_A 228 VKWVDPTEGAVSSGPVMAVVKGG-KED------------LAKAFMNYALGEEAQKAFCEA-MYY-GAVNRK---VQYSEK 289 (333)
T ss_dssp SEEECCTTCCEEECCEEEEBTTS-CHH------------HHHHHHHHHTSHHHHHHHHHH-HTC-BCSCTT---CCCCTT
T ss_pred eeEEcCCCceeeccceEEEeCCC-CHH------------HHHHHHHHHcCHHHHHHHHHh-cCC-CCCCCC---cCCCHH
Confidence 99999999999999999999999 999 999999999999999999875 355 555432 347888
Q ss_pred HhcCCCC
Q 044097 421 LLKGKPS 427 (439)
Q Consensus 421 l~~~~~~ 427 (439)
+++..|.
T Consensus 290 ~~~~~p~ 296 (333)
T 3pu5_A 290 LKHRLPS 296 (333)
T ss_dssp TTTTSCC
T ss_pred HHhcCcc
Confidence 8776665
No 13
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=99.93 E-value=3.5e-25 Score=216.59 Aligned_cols=251 Identities=13% Similarity=0.146 Sum_probs=184.0
Q ss_pred eeEEEEeCCCC-ccHHHHHHHHhhcCCeEEEEEe--------eecccc-cccceEec-CchhHHHHHHCCCccccccccc
Q 044097 136 VPLRVVSLQNS-VPQSWVKDFMRSQGKRLKFQMN--------LCASID-GIVNNLST-PFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 136 ~~L~v~~w~~~-~~~~li~~Fek~~GI~V~~~~~--------~~~s~~-~~~~dv~~-~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
.+|+||+|.++ ..++++++|++++||+|+++.. ..+... ..+|.+.. +..++..++++|+|+|++...
T Consensus 2 ~~l~v~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~~~kl~a~~~~~~~Dv~~~~~~~~~~~~~~~g~l~~l~~~~- 80 (322)
T 3e13_X 2 SELNIYSARHYNADFEIIKKFEEKTGIKVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKY- 80 (322)
T ss_dssp CEEEEEECCCCTHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHGGGCCCCEEEESCHHHHHHHHHTTCEECCCCHH-
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHhhCcEEEEEECCcHHHHHHHHHhccCCCCCEEEecCcHHHHHHHHCCCcccCChhH-
Confidence 47899999986 5688999999999999999721 111111 12433334 446799999999999998742
Q ss_pred chhhc-ccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcc-cccCCCCCCCCcccccCccccCceeeccChh
Q 044097 205 QDWFK-RLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSK-FQNHNLAPIEDWKDPWWPELAGRISMVNSPR 282 (439)
Q Consensus 205 ~~~~~-~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~-~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~ 282 (439)
+. ++.+.+ .+++|+. +|+..++.+|+||+++ |++ ++|+||+||++++++|++++.+...
T Consensus 81 ---~~~~~~~~~-----------~~~~g~~--~~~~~~~~~l~yn~~~~~~~---~~p~tw~dl~~~~~~g~~~~~~~~~ 141 (322)
T 3e13_X 81 ---LEEFIPAHL-----------RDKDKEW--FAITKRARIIAYNKNTNIDI---SKMKNYEDLAKAEFKGEIVMRSATA 141 (322)
T ss_dssp ---HHHHSCGGG-----------BCTTSSC--EEEEEEEEEEEEETTSCCCC---TTCCSGGGGGSGGGTTCEECCCTTS
T ss_pred ---hhhhchhhh-----------CCCCCcE--EEeeceeEEEEECCccccCC---CCCCCHHHHhhhhhcCeEeecCCCC
Confidence 22 244332 3566874 6666789999999999 987 4899999999999999998865432
Q ss_pred H----HH----HhCCHHHHHHHHHHHhhhhcccC--c-hHHHHHhhcCCeEEEEEccccHHHHH--------HcCCCeeE
Q 044097 283 E----VI----VAGGKIAVQQNLALLANQVRLFD--S-THYLKAFGIGDVWVAVGWSSDVLPAV--------KRMSNVAV 343 (439)
Q Consensus 283 ~----~~----~~~G~d~~~e~L~~l~~~v~~~~--~-~~~~~~f~~Ge~~~~i~ws~~~~~~~--------~~~~~v~~ 343 (439)
. ++ ...|.+.+.+++.++.++...+. . .+..+.|.+|+++|++.++.....+. ..+.++.+
T Consensus 142 ~~~~~~~~~~~~~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (322)
T 3e13_X 142 PYSKTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIGLLKNSKNPKDVEVGNSLGI 221 (322)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHBSSSCCSSHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSSHHHHHHHHTEEE
T ss_pred chhHHHHHHHHHhcCHHHHHHHHHHHHHhcCcCCCCCcHHHHHHHHCCCCcEEeechHHHHHHHhccccchhccccceeE
Confidence 1 11 23577888889999988765432 2 24578899999999998433222221 22357888
Q ss_pred EccC---CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHH
Q 044097 344 VVPK---SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEE 420 (439)
Q Consensus 344 ~vP~---eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~e 420 (439)
++|. +|...+.++++|+++++|++ +|++||+||+|+|.|..+++. ++..|...+ +..+++
T Consensus 222 ~~P~~~~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~--~~~~P~~~~---~~~~~~ 284 (322)
T 3e13_X 222 IFPNQDNRGTHINISGIAMTKSSKNQD------------AAKKFMEFMLSPEIQKILTDS--NYEFPIRND---VELSQT 284 (322)
T ss_dssp ECTTTTTTCBCEEEEEEEEETTCSCHH------------HHHHHHHHHTSHHHHHHHHHT--TCCEESSTT---SCCCHH
T ss_pred ecCCCCCCCceeeeeeeEEecCCCCHH------------HHHHHHHHHhCHHHHHHHHhc--CcccCCccC---CCCccc
Confidence 8998 78888899999999999999 999999999999999999863 555777643 446777
Q ss_pred Hhc
Q 044097 421 LLK 423 (439)
Q Consensus 421 l~~ 423 (439)
++.
T Consensus 285 ~~~ 287 (322)
T 3e13_X 285 VKD 287 (322)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 14
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=99.92 E-value=3.3e-24 Score=209.88 Aligned_cols=243 Identities=13% Similarity=0.134 Sum_probs=175.4
Q ss_pred ceeEEEEeCCC-CccHHHHHHHHhhcCCeEEEEEe--------eecccccccceEe-cCc-hhHHHHHHCCCcccccccc
Q 044097 135 TVPLRVVSLQN-SVPQSWVKDFMRSQGKRLKFQMN--------LCASIDGIVNNLS-TPF-NKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 135 ~~~L~v~~w~~-~~~~~li~~Fek~~GI~V~~~~~--------~~~s~~~~~~dv~-~~~-~~~~~~i~~Gll~pl~~~~ 203 (439)
+.+|+|+.|.+ ...++++++|++++||+|+++.. ..+.......||+ ... .++..++++|+|+|++..
T Consensus 4 ~~~L~v~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~~~kl~~~~~~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~- 82 (312)
T 1xvx_A 4 DSGIVVYNAQHENLVKSWVDGFTKDTGIKVTLRNGGDSELGNQLVQEGSASPADVFLTENSPAMVLVDNAKLFAPLDAV- 82 (312)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESSSHHHHHHHHTTCBCCCCHH-
T ss_pred CceEEEEecCcHHHHHHHHHHHHHhhCCEEEEEECChHHHHHHHHHhhCCCCCCEEEecchHHHHHHHhCCCcccCChH-
Confidence 45788888754 24478999999999999999731 1111111123554 444 478899999999999863
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhH
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPRE 283 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~ 283 (439)
.++++.+.+ .+.+| |++|+..++.+|+||+++|+++| +|+||+||++++++|++++......
T Consensus 83 ---~~~~~~~~~-----------~~~~g--y~~P~~~~~~~l~ynk~~~~~~~--~P~tw~dl~~~~~~g~~~~~~~~~~ 144 (312)
T 1xvx_A 83 ---TQAQVAQEY-----------RPEHG--RWTGIAARSTVFVYNPEKISEAE--LPKSIMDLAKPEWKGRWAASPSGAD 144 (312)
T ss_dssp ---HHHHBCGGG-----------SCSSS--SCEEEEEEEEEEEECTTTSCGGG--SCSSGGGGGSGGGTTSEEECTTSHH
T ss_pred ---HHhhCCHHH-----------CCCCC--eEEEEeccceEEEEEhhhccccC--CCCCHHHHhCHHhcCCEeeCCCCcc
Confidence 223333322 24446 89999999999999999999876 6999999999999999887522111
Q ss_pred ---HH----HhCCHHHHHHHHHHHhhhhcccCc-hHHHHHhhcCCeEEEEEccccHHHHHH----cCCCeeEEccCC---
Q 044097 284 ---VI----VAGGKIAVQQNLALLANQVRLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVK----RMSNVAVVVPKS--- 348 (439)
Q Consensus 284 ---~~----~~~G~d~~~e~L~~l~~~v~~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~----~~~~v~~~vP~e--- 348 (439)
++ ..+|.+.+.+++.++.++...+.+ .+..+.|.+|+++|++.|++.+..... .+.++++++|.+
T Consensus 145 ~~~~~~~~~~~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 224 (312)
T 1xvx_A 145 FQAIVSAMLELKGEKATLEWLKAMKTNFTAYKGNSTVMKAVNAGQIDGGVIYHYYRFVDQAKTGENSGKTQLHYFKHQDP 224 (312)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHEEECSSHHHHHHHHHTTSSSEEEEETHHHHHHHTTTCTTTTTCEEECCCTTCG
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhCcccCCchHHHHHHHcCceEEEEecchhHHHHHhhcccCCCceEEEccCCCCC
Confidence 11 123667777888888776533433 456789999999999998877654332 234677778865
Q ss_pred CceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHH-HhhcCCCCCCCcc
Q 044097 349 GASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPF-KQEVIPGASPSAL 410 (439)
Q Consensus 349 G~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~-a~~~~g~~~P~~~ 410 (439)
|...+.++++|+++++|++ +|++||+|++|+|.|..+ .+ .++..|...
T Consensus 225 g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~--~~~~~P~~~ 273 (312)
T 1xvx_A 225 GAFVSISGGGVLASSKHPK------------EAQEFVKWITGKSGQDILRTN--NAFEYAVGV 273 (312)
T ss_dssp GGCEEEEEEEEBTTCSSHH------------HHHHHHHHHHSHHHHHHHHHS--SSCCBCCBT
T ss_pred cceeeeeeEEEecCCCCHH------------HHHHHHHHHhCHHHHHHHhhc--cCcccCCCC
Confidence 5566778999999999999 999999999999999998 75 345567654
No 15
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=99.92 E-value=4e-24 Score=211.26 Aligned_cols=254 Identities=14% Similarity=0.148 Sum_probs=180.5
Q ss_pred ceeEEEEeCCCC-ccHHHHHHHHhhcCCeEEEEEe--------eecccccccceEec--CchhHHHHHHCCCcccccccc
Q 044097 135 TVPLRVVSLQNS-VPQSWVKDFMRSQGKRLKFQMN--------LCASIDGIVNNLST--PFNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 135 ~~~L~v~~w~~~-~~~~li~~Fek~~GI~V~~~~~--------~~~s~~~~~~dv~~--~~~~~~~~i~~Gll~pl~~~~ 203 (439)
..+|+|+.|.+. ..++++++|++++||+|+++.. +.+.......||+. +..++..++++|+|+||+...
T Consensus 18 ~~~l~v~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~~~kl~~~~~~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~ 97 (334)
T 2pt1_A 18 QQEINLYSSRHYNTDNELYAKFTAETGIKVNLIEGKADELLERIKSEGANSPADVLLTVDLARLWRAEEDGIFQPVQSEI 97 (334)
T ss_dssp CCEEEEEESCCCTTHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHGGGCCCCEEEEESHHHHHHHHHTTCBCCCCCHH
T ss_pred cCEEEEEeCCchHHHHHHHHHHHHHHCCEEEEEeCCcHHHHHHHHhccCCCCCCEEEecCchHHHHHHhCCceeeCCHhH
Confidence 347889998754 4578999999999999999731 11111111345553 446899999999999998742
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhH
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPRE 283 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~ 283 (439)
. + ..+.+.+ .+.+|++||+|+ ++.+|+|||++|+++ +|+||+||++++++|++++.+....
T Consensus 98 ~-~--~~~~~~~-----------~~~dG~~y~~p~--~~~~l~Ynkd~~~~~---~p~tw~el~~~~~~g~~~~~~~~~~ 158 (334)
T 2pt1_A 98 L-E--TNVPEYL-----------RSPDGMWFGFTK--RARVIMYNKGKVKPE---ELSTYEELADPKWKGRVIIRSSSNE 158 (334)
T ss_dssp H-H--HHSCGGG-----------BCTTSSCEEEEE--EEEEEEEETTTCCGG---GCCCSGGGGSGGGTTCBCCCCTTSH
T ss_pred h-h--ccCchhe-----------ECCCCcEEeecc--ccEEEEEeccccccc---CCCCHHHHhhhhhcCeeEecCCCCc
Confidence 0 1 1222221 245699999997 688999999999986 5899999999999999887643211
Q ss_pred ----HH----HhCCHHHHHHHHHHHhhhhcc--cCc-hHHHHHhhcCCeEEEEEccccHHHHHH-------c-CCCeeEE
Q 044097 284 ----VI----VAGGKIAVQQNLALLANQVRL--FDS-THYLKAFGIGDVWVAVGWSSDVLPAVK-------R-MSNVAVV 344 (439)
Q Consensus 284 ----~~----~~~G~d~~~e~L~~l~~~v~~--~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~-------~-~~~v~~~ 344 (439)
++ ...|...+.+++.+|.++... ... .+..+.|.+|+++|++.++.....+.. . ..+++++
T Consensus 159 ~~~~~~~~~~~~~g~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (334)
T 2pt1_A 159 YNQSLVASLVVADGEESTLAWAKGFVSNFAREPQGNDTAQIEAVSSGEADLTLANTYYMGRLLESEDPAQKAIAENVGVF 238 (334)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTBSSCCCSCHHHHHHHHHHTSCSEEEEEHHHHHHHHTCSCHHHHHHHHTEEEE
T ss_pred hHHHHHHHHHHccChHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhcCceeEEeccchhhHhhhhcccccccccccceeEE
Confidence 11 123666777888888766422 222 356788999999999987655443332 0 2468888
Q ss_pred ccC---CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHH
Q 044097 345 VPK---SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEEL 421 (439)
Q Consensus 345 vP~---eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el 421 (439)
+|. +|...++++++|+++++|++ +|++||+|++|+|.|..+++. ++..|...+ +..++++
T Consensus 239 ~P~~~~~g~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~~~--~~~~P~~~~---~~~~~~~ 301 (334)
T 2pt1_A 239 FPNQEGRGTHVNVSGVGVVKTAPNRE------------GAVKFIEFLVSEPAQAFLAQN--NYEYPVLAG---VPLNKSV 301 (334)
T ss_dssp CCCTTTTCBCEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHHHH--HCCEESSTT---CCCCHHH
T ss_pred ecCCCCCCCEeceeEEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHHhh--cCCcCccCC---CCCCccc
Confidence 897 46677888999999999999 999999999999999999864 344666532 3356776
Q ss_pred hcC
Q 044097 422 LKG 424 (439)
Q Consensus 422 ~~~ 424 (439)
.+.
T Consensus 302 ~~~ 304 (334)
T 2pt1_A 302 ASF 304 (334)
T ss_dssp HTT
T ss_pred CCh
Confidence 543
No 16
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=99.92 E-value=1.1e-23 Score=206.63 Aligned_cols=252 Identities=12% Similarity=0.068 Sum_probs=180.9
Q ss_pred eeEEEEeCCCC-ccHHHHHHHHhhcCCeEEEEEeee--------cccccccceEec--CchhHHHHHHCCCccccccccc
Q 044097 136 VPLRVVSLQNS-VPQSWVKDFMRSQGKRLKFQMNLC--------ASIDGIVNNLST--PFNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 136 ~~L~v~~w~~~-~~~~li~~Fek~~GI~V~~~~~~~--------~s~~~~~~dv~~--~~~~~~~~i~~Gll~pl~~~~~ 204 (439)
.+|+|++|.+. ..++++++|++++||+|+++ ... ++......||+. +..++..++++|+|+|++...
T Consensus 2 ~~l~v~~~~~~~~~~~~~~~F~~~~gi~V~~~-~~~~~~~~kl~~~~~~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~- 79 (320)
T 1q35_A 2 NEVNVYSYRQPYLIEPMLKNFEKDTGIKVNII-FADKGLVDRVKQEGELSPADVLLTVDISRVMEIVNADLAQKIDSKV- 79 (320)
T ss_dssp CEEEEEESSCGGGTHHHHHHHHHHHCCEEEEE-ECC-CCHHHHHHHGGGCCCCEEEESCHHHHHHHHHTTCBCCCCCHH-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHCCEEEEE-eCcHHHHHHHHhccCCCCCCEEEecChHHHHHHHHCCCcccCChhh-
Confidence 36899999765 56889999999999999986 311 111111345554 346899999999999998642
Q ss_pred chhhc-ccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhH
Q 044097 205 QDWFK-RLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPRE 283 (439)
Q Consensus 205 ~~~~~-~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~ 283 (439)
++ .+.+.+ .+.+|+.|++|+ ++.+|+||+++|+++ ++|+||+||++++++|++++.+....
T Consensus 80 ---~~~~~~~~~-----------~~~~G~~~~~~~--~~~~l~ynkd~~~~~--~~P~tw~el~~~~~~g~~~~~~~~~~ 141 (320)
T 1q35_A 80 ---LEKNIPAQF-----------RDSNDQWFGLTT--RARVIYTSKDRVGKL--PAGFDYLDLAKPEYKGKVCVRSGKNS 141 (320)
T ss_dssp ---HHHHSCGGG-----------BCTTSSCEEEEE--EEEEEEEETTTTCSC--CTTCCGGGGGSGGGTTCEECSCTTSH
T ss_pred ---hhccCchhe-----------ECCCCeEEeeec--ceEEEEEehHHhhhc--CCCCCHHHHhhHHhCCcEEeccCCCc
Confidence 11 222221 245698888774 688999999999986 58999999999999999887643211
Q ss_pred ----HH----HhCCHHHHHHHHHHHhhhhcc--cCch-HHHHHhhcCCeEEEEEccccHHHHHH--cC----CCeeEEcc
Q 044097 284 ----VI----VAGGKIAVQQNLALLANQVRL--FDST-HYLKAFGIGDVWVAVGWSSDVLPAVK--RM----SNVAVVVP 346 (439)
Q Consensus 284 ----~~----~~~G~d~~~e~L~~l~~~v~~--~~~~-~~~~~f~~Ge~~~~i~ws~~~~~~~~--~~----~~v~~~vP 346 (439)
++ ...|...+.+++.++.++... ...+ +..+.|.+|+++|++.|++.+..+.. .. .++++++|
T Consensus 142 ~~~~~~~~~~~~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 221 (320)
T 1q35_A 142 YNVSLFAAMIEHYGIEKTKAFLEGLKANLARKPQGGDRDQVKAIKEGICDYSIGNSYYYGKMLDDEKQKSWAEAAIINFP 221 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCSCHHHHHHHHHHTSCSEEEEETHHHHHHHHSTTTHHHHHTEEEECC
T ss_pred hhHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHCCCccEEeccHHHHHHhhhcccccCCCcceEEecC
Confidence 11 123556677888888776532 2223 56788999999999988766554442 11 36888899
Q ss_pred --CCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcC
Q 044097 347 --KSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKG 424 (439)
Q Consensus 347 --~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~ 424 (439)
++|...+.++++|+++++|++ +|++||+|++|+|.|..+++. ++..|...+ +..++++...
T Consensus 222 ~~~~g~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~~~--~~~~P~~~~---~~~~~~~~~~ 284 (320)
T 1q35_A 222 SGEHGTHKNISGVVIAKHSPNKA------------NAVKLIEYLSGEKAQGLYAEL--NHEYPVKEG---IEPSAIVKGW 284 (320)
T ss_dssp CSTTCBEEEEEEEEEBTTCTTHH------------HHHHHHHHHHSHHHHHHHHHH--HCCEESSTT---CCCCHHHHHT
T ss_pred CCCCCccccceeEEEECCCCCHH------------HHHHHHHHHhCHHHHHHHhcc--CcccCcCCC---CCCCccCCCh
Confidence 568778888999999999999 999999999999999999864 244665532 3457777543
No 17
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=99.92 E-value=2.2e-24 Score=220.27 Aligned_cols=248 Identities=14% Similarity=0.127 Sum_probs=165.1
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEeeeccc---------ccccceE-ecCchhHHHHHHCCCcccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNLCASI---------DGIVNNL-STPFNKLSFAIKKRFIEPIAE 201 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~~~s~---------~~~~~dv-~~~~~~~~~~i~~Gll~pl~~ 201 (439)
.++|+||.+++. ..++++++|++++||+|+++....+.. .+..+|| .....++..++.+|++.||+.
T Consensus 40 ~~~lt~w~~~~~~~~~~~~~~~~Fe~~~gi~V~~~~~~~~~~~~kl~~~~~sg~~PDv~~~~~~~~~~~~~~g~l~~l~~ 119 (420)
T 4hs7_A 40 PNQLTMWVDGDKQMAFYKKITDQYTKKTGIKVKLVNIGQNDQLENISLDAPAGKGPDIFFLAHDNTGSAYLQGLAAEIKL 119 (420)
T ss_dssp CSEEEEEESSHHHHHHHHHHHHHHHHHHCCEEEEEECCTTTHHHHHHHHTTTTCCCSEEEEEGGGHHHHHHTTCEECCCC
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHhccCCEEEEEECCcHHHHHHHHHHHhcCCCCcEEEeCchHHHHHHHcCCcccccc
Confidence 457888776543 346899999999999999973211110 1112344 456789999999999999987
Q ss_pred cccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc----cCce
Q 044097 202 AEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL----AGRI 275 (439)
Q Consensus 202 ~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l----kgkI 275 (439)
.. +...++.+. .++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||.+. ++ .+.+
T Consensus 120 ~~--~~~~~~~~~---~~~~---~~~d--Gk~y~vP~~~~~~~l~Ynkdl~~~----~p~Twdel~~~~~~~~~~~~~~~ 185 (420)
T 4hs7_A 120 SK--DELKGFNKQ---ALKA---MNYD--NKQLALPAIVETTALFYNKKLVKN----APQTLEEVEANAAKLTDSKKKQY 185 (420)
T ss_dssp CH--HHHTTBCHH---HHHH---TEET--TEECEEEEEEECCEEEEETTTCCS----CCCBHHHHHHHHHHHCBTTTTBE
T ss_pred CH--HhHhhcCHH---HHHh---CeEC--CEEEEEeccccceEEEEEcccccc----ccccchhhHHHHHHHHhccCCce
Confidence 52 233444433 2322 2355 999999999999999999999997 79999999864 23 2344
Q ss_pred eeccChhHH-----HH--h-------CCH-----------HHHHHHH---HHHhhh-h--cccCchHHHHHhhcCCeEEE
Q 044097 276 SMVNSPREV-----IV--A-------GGK-----------IAVQQNL---ALLANQ-V--RLFDSTHYLKAFGIGDVWVA 324 (439)
Q Consensus 276 ~~~~~~~~~-----~~--~-------~G~-----------d~~~e~L---~~l~~~-v--~~~~~~~~~~~f~~Ge~~~~ 324 (439)
++....... +. . .|. +...+.+ .++... . .....+...+.|.+|+++|.
T Consensus 186 g~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~ 265 (420)
T 4hs7_A 186 GMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQF 265 (420)
T ss_dssp EEECCTTSHHHHHHHHCCSSCCSEEESSSCEEEEEECTTCHHHHHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEEE
T ss_pred eeccCCCCccchhhhhhhccchhhhhccccccccccccCCHHHHHHHHHHHHHHHcCCCCcccccchhhhhhccCceEEE
Confidence 443222111 11 1 111 2334444 444322 1 11123456788999999999
Q ss_pred EEccccHHHHHHc-CCCeeEE-ccCC-C----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHH
Q 044097 325 VGWSSDVLPAVKR-MSNVAVV-VPKS-G----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPF 397 (439)
Q Consensus 325 i~ws~~~~~~~~~-~~~v~~~-vP~e-G----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~ 397 (439)
+.++..+..+.+. +.++++. +|.. | ...++.+|+|+++++|++ +|++||+||+|+|.|..+
T Consensus 266 ~~g~~~~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------------aA~~fi~~l~s~e~~~~~ 333 (420)
T 4hs7_A 266 VTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLSEYSKHKY------------WAKDLMLYITSKDTLQKY 333 (420)
T ss_dssp EECSTTHHHHHHHHGGGEEEECCCBSSSSBCCCEEEEEEEEEETTCSCHH------------HHHHHHHHHTSHHHHHHH
T ss_pred EechHHHHHHHHhcCCceEEEEccCCCCCCCccccccceEEecCCCCCHH------------HHHHHHHHHCCHHHHHHH
Confidence 9988777665543 3467765 6742 2 235667899999999999 999999999999999999
Q ss_pred HhhcCCCCCCCcc
Q 044097 398 KQEVIPGASPSAL 410 (439)
Q Consensus 398 a~~~~g~~~P~~~ 410 (439)
++. .|+ .|...
T Consensus 334 ~~~-~g~-~P~~~ 344 (420)
T 4hs7_A 334 TDE-MSE-ITGRV 344 (420)
T ss_dssp HHH-HCC-CBSBT
T ss_pred HHH-hCC-CCCch
Confidence 876 344 56553
No 18
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.6e-24 Score=217.00 Aligned_cols=241 Identities=12% Similarity=0.162 Sum_probs=172.8
Q ss_pred ceeEEEEeCCCC-ccHHHHHHHHhhc-CCeEEEEEe--------eecc---cccccceEe-cCc-hhHHHHHHCCCcccc
Q 044097 135 TVPLRVVSLQNS-VPQSWVKDFMRSQ-GKRLKFQMN--------LCAS---IDGIVNNLS-TPF-NKLSFAIKKRFIEPI 199 (439)
Q Consensus 135 ~~~L~v~~w~~~-~~~~li~~Fek~~-GI~V~~~~~--------~~~s---~~~~~~dv~-~~~-~~~~~~i~~Gll~pl 199 (439)
..+|+|++|.+. ..++++++|++++ ||+|+++.. .... +.. ..||+ ... .++..++++|+|+||
T Consensus 33 ~~~L~v~~~~~~~~~~~~~~~Fe~~~Pgi~V~~~~~~~~~~~~kl~~~~~ag~~-~~DV~~~~~~~~~~~~~~~g~l~~l 111 (355)
T 3c9h_A 33 AQTLVVYSSLDEPLATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKK-TADFAFSSAMDLQVKLSNDGYAQRS 111 (355)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCC-BCSEEEESCHHHHHHHHHTTCEECC
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHCcCeEEEEEeCChHHHHHHHHHHHhcCCC-CCCEEEecchHHHHHHHhCCCcccC
Confidence 347889998765 3478999999998 999999731 0010 112 23554 444 557789999999999
Q ss_pred cccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC------ccccC
Q 044097 200 AEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW------PELAG 273 (439)
Q Consensus 200 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d------p~lkg 273 (439)
+.. +..++.+.+ .++ |+.| |+..++.+|+||+++|++. ++|+||+||++ ++++|
T Consensus 112 ~~~----~~~~~~~~~----------~~~--~~~~--~~~~~~~~l~YNk~~~~~~--~~P~tw~dL~~~~~~~~~~~~g 171 (355)
T 3c9h_A 112 DLA----MSARWPAWA----------NWR--NTAY--ALTFEPAVFVYHKPSFTTE--KPPATRAEFVDYLERHAKEVHG 171 (355)
T ss_dssp CCT----TTTTSCGGG----------EET--TTEE--ECBCEEEEEEEEGGGCSSS--CCCCSHHHHHHHHHHTHHHHTT
T ss_pred CCh----hhhhCcchh----------eeC--CeEE--EEecCcEEEEEEHHhcCCC--CCCCCHHHHHHHHHhcchhhCC
Confidence 863 123333321 123 6655 6678899999999999875 58999999998 78999
Q ss_pred ceeeccChhH--HH--Hh---CCHHHHHHHHHHHhhh-hcccC-chHHHHHhhcCCeEEEEEccccHHHH-HHcCCCeeE
Q 044097 274 RISMVNSPRE--VI--VA---GGKIAVQQNLALLANQ-VRLFD-STHYLKAFGIGDVWVAVGWSSDVLPA-VKRMSNVAV 343 (439)
Q Consensus 274 kI~~~~~~~~--~~--~~---~G~d~~~e~L~~l~~~-v~~~~-~~~~~~~f~~Ge~~~~i~ws~~~~~~-~~~~~~v~~ 343 (439)
++++.+.... .+ .. .+.+.+.+++.++.++ +..+. +.+..+.|.+|+++|++.|++.+... .+.+.++++
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~ 251 (355)
T 3c9h_A 172 RIATYDIERSGVGFLFMSRDQEQFGDIWSVIKAMGAAGVKVYSTSSAILERVSDGRFVLGYNILGSYAADWASRHPDVGI 251 (355)
T ss_dssp CEEEECTTC-CHHHHHHHHHHHHCTTHHHHHHHHHHTTCEEESCHHHHHHHHHTTSCSEEEEEEHHHHHHHHHHCTTEEE
T ss_pred ceeecCccccchHHHHHhcchhccHHHHHHHHHHHhcCCeecCCcHHHHHHHHCCCeEEEEecchhHHHHHHhcCCCeeE
Confidence 9988653321 11 11 0113466778888764 44443 34667899999999999888776544 345678999
Q ss_pred EccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcc
Q 044097 344 VVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 344 ~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~ 410 (439)
++|++|...+.++++|+++++|++ +|++||+|++|+|.|..+++. . +..|...
T Consensus 252 ~~P~~g~~~~~~~~~I~k~s~~~e------------aA~~Fi~fl~s~e~q~~~~~~-~-~~~P~~~ 304 (355)
T 3c9h_A 252 VLPKDYTVVMSRIGLVPEAAANPE------------LGRRYLEFFMSKEGQTIMARQ-L-QIPAVSP 304 (355)
T ss_dssp ECCSSCEEEECCEEEEETTBSCHH------------HHHHHHHHHHSHHHHHHHHHH-S-CCCBCCT
T ss_pred EecCCCceeeeeEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhc-C-CCcCcCC
Confidence 999988888888999999999999 999999999999999999864 3 4456543
No 19
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=99.91 E-value=2.4e-24 Score=223.31 Aligned_cols=256 Identities=13% Similarity=0.085 Sum_probs=172.8
Q ss_pred ceeEEEEeCCC--CccHHHHHHHHhhc-CCeEEEEEeee-----------cccccccceEecCchhHHHHHHCCCccccc
Q 044097 135 TVPLRVVSLQN--SVPQSWVKDFMRSQ-GKRLKFQMNLC-----------ASIDGIVNNLSTPFNKLSFAIKKRFIEPIA 200 (439)
Q Consensus 135 ~~~L~v~~w~~--~~~~~li~~Fek~~-GI~V~~~~~~~-----------~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~ 200 (439)
.++|+++.|++ ...++++++|++++ ||+|+++.... .+++ .+|.+.....++..++++|+|+||+
T Consensus 29 ~~tlt~w~~~~~~~~~~~~~~~F~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~-~pDv~~~~~~~~~~~~~~g~l~~L~ 107 (458)
T 3uor_A 29 KTTVRFWAMGKEAEVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAADG-LPDVCQLGNTWLPEFALLDTLEPMQ 107 (458)
T ss_dssp CEEEEEEECTHHHHHHHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHHHHHTTC-CCSEEEEETTTHHHHHHTTCBCCCH
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHHHCCCcEEEEEEcChHHHHHHHHHHHhCCC-CCCEEEECcHhHHHHHHCCCccCCc
Confidence 34788888865 24478999999998 99999973211 1222 2444445667899999999999998
Q ss_pred ccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCC-CCCCCcccccCc--ccc-----
Q 044097 201 EAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNL-APIEDWKDPWWP--ELA----- 272 (439)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl-~~P~TW~DL~dp--~lk----- 272 (439)
+..........++..+.+++. ..+ +|++||+|+..++.+|+|||++|+++|+ ++|+||+||++. +++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~---~~~--dG~~y~vP~~~~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~~~~l~~~~g~ 182 (458)
T 3uor_A 108 PYVARSKIVDPADYFPGVWDT---NLV--DGTLYGVPWYVDTRLLFYRKDLLREAGYSQMPKTWAEMEQVMAAIKRKVGP 182 (458)
T ss_dssp HHHHTCSSCCGGGBCHHHHHT---TEE--TTEECCEEEEEECCEEEEEHHHHHHTTCSSCCCBHHHHHHHHHHHHHHHCT
T ss_pred hhhhcccccCHHHhCHHHHhh---eEE--CCEEEEecccCcccEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHhcccCC
Confidence 752000000233334444432 234 4999999999999999999999999999 899999999885 332
Q ss_pred Cceeec---cChhHHH---HhCCH--------------H---HHHHHHHHHhhh--hc-cc--CchHHHHHhhcCCeEEE
Q 044097 273 GRISMV---NSPREVI---VAGGK--------------I---AVQQNLALLANQ--VR-LF--DSTHYLKAFGIGDVWVA 324 (439)
Q Consensus 273 gkI~~~---~~~~~~~---~~~G~--------------d---~~~e~L~~l~~~--v~-~~--~~~~~~~~f~~Ge~~~~ 324 (439)
+.+++. +....++ ...|. + .+.+.+.++... +. .. ..++..+.|.+|+++|.
T Consensus 183 ~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~am~ 262 (458)
T 3uor_A 183 DRYAILMPLNEFEQQLSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKVSETQVSNVWYEFFNGYYAFY 262 (458)
T ss_dssp TSEEEECCTTCCHHHHHHHHTSSSCSEETTTTEECTTSHHHHHHHHHHHHHHHTTSSCCCCGGGSSCHHHHHHHTSEEEE
T ss_pred CceeEecCchhHHHHHHHHHHcCCeEEcCCCCeeecCCHHHHHHHHHHHHHHHcCCCCCcccccchHHHHHHhcCCEEEE
Confidence 333332 2222111 11110 2 344555555432 11 01 12245789999999999
Q ss_pred EEccccHHHHHHcCC-----CeeEE-ccC----CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhh
Q 044097 325 VGWSSDVLPAVKRMS-----NVAVV-VPK----SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARA 394 (439)
Q Consensus 325 i~ws~~~~~~~~~~~-----~v~~~-vP~----eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q 394 (439)
+.++..+..+....+ ++++. +|. .+...++.+++|+++++|++ +|++||+||+|+|.|
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~~~e------------aA~~fl~~l~s~e~q 330 (458)
T 3uor_A 263 LSGPWNVREFKLRQPPGMEGNWGTAPLPGPNGLGAGIAGGSSLVIFKSSQHKD------------ASWKLIEYLSQPQVQ 330 (458)
T ss_dssp EECTHHHHHHHHHCCGGGTTSEEEECCBBSSSBCCCBCEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHH
T ss_pred EcCcchHHHHhhhCcccccceEEEEeCCCCCCCCccccCceEEEEECCCCCHH------------HHHHHHHHHcCHHHH
Confidence 998877766655443 67765 675 23456678999999999999 999999999999999
Q ss_pred HHHHhhcCCCCCCCcc
Q 044097 395 LPFKQEVIPGASPSAL 410 (439)
Q Consensus 395 ~~~a~~~~g~~~P~~~ 410 (439)
..+.+. .|+ .|...
T Consensus 331 ~~~~~~-~g~-~P~~~ 344 (458)
T 3uor_A 331 ARFHAI-IGD-LPPRR 344 (458)
T ss_dssp HHHHHH-HCC-BCSBH
T ss_pred HHHHHh-cCC-CCCcH
Confidence 999875 344 66553
No 20
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=99.91 E-value=3.7e-24 Score=212.17 Aligned_cols=246 Identities=18% Similarity=0.151 Sum_probs=176.8
Q ss_pred ceeEEEEeCCCC-----ccHHHHHHHHhhcCCeEEEEEeeeccc-----------ccccceEec--CchhHHHHHHCCCc
Q 044097 135 TVPLRVVSLQNS-----VPQSWVKDFMRSQGKRLKFQMNLCASI-----------DGIVNNLST--PFNKLSFAIKKRFI 196 (439)
Q Consensus 135 ~~~L~v~~w~~~-----~~~~li~~Fek~~GI~V~~~~~~~~s~-----------~~~~~dv~~--~~~~~~~~i~~Gll 196 (439)
..+|+|+.|++. +.++++++|++++||+|+++. ..+. .....||+. +..++..++++|+|
T Consensus 22 ~~~L~v~~~~~~~~~~~~~~~~~~~Fe~~~gi~V~~~~--~~~~~~~~~kl~~~~~~~~pDv~~~~~~~~~~~~~~~g~l 99 (330)
T 2qry_A 22 KPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVA--LEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLF 99 (330)
T ss_dssp CCEEEEEECHHHHSTTSSHHHHHHHHHTTSCSEEEEEE--CSCHHHHHHHHHHHGGGCCCSEEEEEEGGGHHHHHHHTCB
T ss_pred CCeEEEEeccccccchhhhHHHHHHHHHHHCCEEEEEe--CCCHHHHHHHHHhccCCCCCCEEEEcChHHHHHHHHCCce
Confidence 347889998653 247899999999999999973 2211 111245554 45789999999999
Q ss_pred ccccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCcee
Q 044097 197 EPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRIS 276 (439)
Q Consensus 197 ~pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~ 276 (439)
+||+.+ .+.++ +.. .+. + .|++|+..++.+|+|||++|++ +|+||+||++++++|+++
T Consensus 100 ~~l~~~--~~~~~-~~~------------~~~-~--~y~vP~~~~~~~l~YNkd~~~~----~P~Tw~dl~~~~~~g~~~ 157 (330)
T 2qry_A 100 AKSGVA--ADAVN-VPG------------GWN-N--DTFVPFDYGYFAFVYDKNKLKN----PPQSLKELVESDQNWRVI 157 (330)
T ss_dssp CCCCCC--GGGCC-CTT------------CCC-C--SSCEEEEEEEEEEEEETTTCSS----CCSSHHHHHHCSSCCCEE
T ss_pred eccccc--ccccc-CCH------------HHh-c--CeEEEEeccceEEEEehhhccC----CCCCHHHHHhHHhcCeeE
Confidence 999421 01111 111 122 2 3899999999999999999986 799999999999999998
Q ss_pred eccChhHH----HH-----hCCHHHHHHHHHHHhhhhcccC--chHHHHHhhcCCeEEEEEccccHH-HHHH-cCCCeeE
Q 044097 277 MVNSPREV----IV-----AGGKIAVQQNLALLANQVRLFD--STHYLKAFGIGDVWVAVGWSSDVL-PAVK-RMSNVAV 343 (439)
Q Consensus 277 ~~~~~~~~----~~-----~~G~d~~~e~L~~l~~~v~~~~--~~~~~~~f~~Ge~~~~i~ws~~~~-~~~~-~~~~v~~ 343 (439)
+.+..... +. ..| +.+.+.+.++.++...+. .++..+.|.+|+++|++.|++.+. ...+ .+.++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~g-~~a~~~~~~l~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~ 236 (330)
T 2qry_A 158 YQDPRTSTPGLGLLLWMQKVYG-DDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAA 236 (330)
T ss_dssp EECTTTCHHHHHHHHHHHHHHG-GGHHHHHHHHHTTEEEEESSHHHHHHHHHTTSCSEEEEETTHHHHHHHHHCCCCEEE
T ss_pred eeCCCCCchHHHHHHHHHHhhC-hHHHHHHHHHHhcCceeccChHHHHHHHhCCCEEEEEecccHHHHHhhhccCCceeE
Confidence 86532211 11 123 346677778877654332 245678899999999999987653 2323 3457888
Q ss_pred EccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhc
Q 044097 344 VVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLK 423 (439)
Q Consensus 344 ~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~ 423 (439)
++|++|...++++++|+++++|++ +|++||+|++|+|.|..+++. . +..|. .+ +.+|++++.
T Consensus 237 ~~p~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~-~-g~~P~-~~---v~~~~~~~~ 298 (330)
T 2qry_A 237 ANFSEGHYLQVEVAARTAASKQPE------------LAQKFLQFMVSPAFQNAIPTG-N-WMYPV-AN---VTLPAGFEK 298 (330)
T ss_dssp CCCTTCEEEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHTTHHHH-T-CSEES-SC---CCCCTTGGG
T ss_pred EeCCCCCeeeeeEEEEECCCCCHH------------HHHHHHHHHcCHHHHHHHHhh-c-ccccc-CC---CCCChhhhh
Confidence 888888888889999999999999 999999999999999999864 3 44666 42 456777654
No 21
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=99.91 E-value=9.5e-24 Score=209.29 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=171.9
Q ss_pred eeEEEEeCCCC-ccHHHHHHHHhhcCCeEEEEE------eeecccccccceEe-c-CchhHHHHHHCCCcccccccccch
Q 044097 136 VPLRVVSLQNS-VPQSWVKDFMRSQGKRLKFQM------NLCASIDGIVNNLS-T-PFNKLSFAIKKRFIEPIAEAEDQD 206 (439)
Q Consensus 136 ~~L~v~~w~~~-~~~~li~~Fek~~GI~V~~~~------~~~~s~~~~~~dv~-~-~~~~~~~~i~~Gll~pl~~~~~~~ 206 (439)
.+|+|+.|.+. ..++++++|++ |+++... ++.+.......||+ . +..++..++++|+|+||+...
T Consensus 34 ~~l~v~~~~~~~~~~~~~~~Fe~---V~~~~~~~~~~~~kl~~~~~~~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~--- 107 (346)
T 2voz_A 34 RTINLYSSRHYNTDDALYDAFGE---VNLIEASAEELIERIQSEGANSPGDILFTVDAGMLWRAEQAGLFQPVRSGK--- 107 (346)
T ss_dssp CEEEEEESCCCTTHHHHHHHHSE---EEEEECCHHHHHHHHHHTGGGCCCSEEEEESHHHHHHHHHTTCBCCCCCHH---
T ss_pred CeEEEEeCCchHHHHHHHHHhhe---EEEEeCCcHHHHHHHHHhcCCCCCCEEEecCHHHHHHHHhCCCeeecCchh---
Confidence 36888998765 45789999998 4333210 01111111134555 3 346899999999999998642
Q ss_pred hhc-ccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhH--
Q 044097 207 WFK-RLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPRE-- 283 (439)
Q Consensus 207 ~~~-~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~-- 283 (439)
++ .+.+.+ .+.+|+. +|+..++.+|+|||++|++. +|+||+||++++++|++++.+....
T Consensus 108 -~~~~~~~~~-----------~~~~G~~--~p~~~~~~~l~YNkd~~~~~---~P~tw~dl~~~~~~g~~~~~~~~~~~~ 170 (346)
T 2voz_A 108 -LNERIPENL-----------RHPDGLW--YGFTQRARVLYYSRDRVNPA---DLSTYEALADPQWRGKILVRPSSNVYN 170 (346)
T ss_dssp -HHHHSCGGG-----------BCTTSSC--EEEEEEEEEEEEETTTCCGG---GCCCSGGGGSGGGTTTEECCCTTSHHH
T ss_pred -hhhcCCHhh-----------CCCCCcE--EeeeccceEEEEehhhcCcc---CCCCHHHHhhHHhcCcEEecCCCCcch
Confidence 11 232222 2456874 57888999999999999984 7999999999999999887653221
Q ss_pred -HH-----HhCCHHHHHHHHHHHhhhhc-c-cCc-hHHHHHhhcCCeEEEEEccccHHHHHH------c--CCCeeEEcc
Q 044097 284 -VI-----VAGGKIAVQQNLALLANQVR-L-FDS-THYLKAFGIGDVWVAVGWSSDVLPAVK------R--MSNVAVVVP 346 (439)
Q Consensus 284 -~~-----~~~G~d~~~e~L~~l~~~v~-~-~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~------~--~~~v~~~vP 346 (439)
.+ ...|.+.+.+++.+|.++.. . ... .+..+.|.+|+++|++.|+.....+.. . +.++++++|
T Consensus 171 ~~~~~~~~~~~g~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 250 (346)
T 2voz_A 171 LSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQIRAIAAGIGDVAIANSYYYIRLQKSTDPADQEVVEKVSLFFP 250 (346)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTBSSSCCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHCCCHHHHHHHHHEEEECC
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHhcCccccCCcHHHHHHHHCCCceEEecccHHHHHHhhcccccccCCCCceeEecC
Confidence 11 12466677788888877653 2 222 356789999999999987755443332 1 135777888
Q ss_pred -----CCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHH
Q 044097 347 -----KSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPEEL 421 (439)
Q Consensus 347 -----~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el 421 (439)
++|...+.++++|+++++|++ +|++||+|++|+|.|..+++. . +..|...+ +..++++
T Consensus 251 ~~~~~~~g~~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~~~-~-g~~P~~~~---~~~~~~~ 313 (346)
T 2voz_A 251 NTGSGERGTHVNVSGAGVLKNAPNRD------------AAIAFLEYLASDDAQRYFAEG-N-NEYPVIPG---VPIDPVL 313 (346)
T ss_dssp SCSTTSCCBCEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHHHH-T-TCEESSTT---SCCCHHH
T ss_pred CCCCCCCCceecceeEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHhc-c-CcccCcCC---CCCCccc
Confidence 457777888999999999999 999999999999999999864 3 44676532 3467777
Q ss_pred hc
Q 044097 422 LK 423 (439)
Q Consensus 422 ~~ 423 (439)
..
T Consensus 314 ~~ 315 (346)
T 2voz_A 314 AA 315 (346)
T ss_dssp HT
T ss_pred CC
Confidence 54
No 22
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=99.91 E-value=7.2e-23 Score=199.81 Aligned_cols=241 Identities=15% Similarity=0.105 Sum_probs=171.2
Q ss_pred EEEEeCCCC-ccHHHHHHHHhhcCCeEEEEEe--------eec-ccccccceEe-cCc-hhHHHHHHCCCcccccccccc
Q 044097 138 LRVVSLQNS-VPQSWVKDFMRSQGKRLKFQMN--------LCA-SIDGIVNNLS-TPF-NKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 138 L~v~~w~~~-~~~~li~~Fek~~GI~V~~~~~--------~~~-s~~~~~~dv~-~~~-~~~~~~i~~Gll~pl~~~~~~ 205 (439)
|+||++.+. ..++++++|++++||+|+++.. +.+ +... ..||+ ... .++..++++|+|+|++..
T Consensus 2 l~v~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~~~kl~~~~~~~-~pDv~~~~~~~~~~~~~~~g~l~~l~~~--- 77 (309)
T 1nnf_A 2 ITVYNGQQKEAATAVAKAFEQETGIKVTLNSGKSEQLAGQLKEEGDKT-PADVFYTEQTATFADLSEAGLLAPISEQ--- 77 (309)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSCCCEEEEECCHHHHHHHHHHHGGGC-CCSEEEESCGGGHHHHHHTTCBCCCCHH---
T ss_pred eEEEeCCCHHHHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHHhcCCC-CCCEEEecchhHHHHHHHCCCcccCCHH---
Confidence 566665432 3468999999888999999721 111 1112 33554 443 689999999999999863
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhH--
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPRE-- 283 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~-- 283 (439)
.++++.+.+ . .. +.+| |++|+..++.+|+||+++|+++ .+|+||+||++++++|++++.+....
T Consensus 78 -~~~~~~~~~---~----~~--~~~g--~~~P~~~~~~~l~YNk~~~~~~--~~P~tw~dl~~~~~~g~~~~~~~~~~~~ 143 (309)
T 1nnf_A 78 -TIQQTAQKG---V----PL--APKK--DWIALSGRSRVVVYDHTKLSEK--DMEKSVLDYATPKWKGKIGYVSTSGAFL 143 (309)
T ss_dssp -HHHTTCCTT---C----CC--CTTS--CCEEEEEEEEEEEEETTTCCGG--GSCSSGGGGGSGGGTTTEEECTTSHHHH
T ss_pred -Hhhhcchhh---c----cc--CCCC--eEEEeeeeEEEEEEehhhcccc--CCCCCHHHHhchhhcCeEeecCCCchHH
Confidence 123333322 1 11 3447 6799999999999999999986 37999999999999999887643211
Q ss_pred HH-----HhCCHHHHHHHHHHHhhhhcccCc-hHHHHHhhcCCeEEEEEccccHHHH-HH---cCCCeeEEccC---CCc
Q 044097 284 VI-----VAGGKIAVQQNLALLANQVRLFDS-THYLKAFGIGDVWVAVGWSSDVLPA-VK---RMSNVAVVVPK---SGA 350 (439)
Q Consensus 284 ~~-----~~~G~d~~~e~L~~l~~~v~~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~-~~---~~~~v~~~vP~---eG~ 350 (439)
.+ ..+|...+.+++.++.++...+.+ .+..+.|.+|+++|++.|++.+..+ .. .+.++++++|. +|.
T Consensus 144 ~~~~~~~~~~G~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~g~ 223 (309)
T 1nnf_A 144 EQVVALSKMKGDKVALNWLKGLKENGKLYAKNSVALQAVENGEVPAALINNYYWYNLAKEKGVENLKSRLYFVRHQDPGA 223 (309)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHEEECSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHHCGGGCSEEEECCCTTCGGG
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHhCCCCCCCchHHHHHhcCCccEEEccHHHHHHHHhcccCCCCceEEeCCCCCCCce
Confidence 11 134666778888888776544433 3567889999999999988776555 33 24567766542 355
Q ss_pred eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcc
Q 044097 351 SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 351 ~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~ 410 (439)
..+..+++|+++++|++ +|++||+||+|+|.|..+++. ++..|...
T Consensus 224 ~~~~~~~~i~~~s~~~~------------aA~~fi~~l~s~e~q~~~~~~--~~~~P~~~ 269 (309)
T 1nnf_A 224 LVSYSGAAVLKASKNQA------------EAQKFVDFLASKKGQEALVAA--RAEYPLRA 269 (309)
T ss_dssp CEEEEEEEEBTTCSCHH------------HHHHHHHHHHSHHHHHHHHHH--SCCEECC-
T ss_pred eeccccEEEEcCCCCHH------------HHHHHHHHHhCHHHHHHHHhc--CCcccccC
Confidence 66778999999999999 999999999999999999864 35466653
No 23
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=99.91 E-value=2.1e-23 Score=212.06 Aligned_cols=249 Identities=13% Similarity=0.096 Sum_probs=171.7
Q ss_pred ceeEEEEeCCCC-ccHHHHHHHHhhc-CCeEEEEEe-e-----------ecccccccceEecCchhHHHHHHCCCccccc
Q 044097 135 TVPLRVVSLQNS-VPQSWVKDFMRSQ-GKRLKFQMN-L-----------CASIDGIVNNLSTPFNKLSFAIKKRFIEPIA 200 (439)
Q Consensus 135 ~~~L~v~~w~~~-~~~~li~~Fek~~-GI~V~~~~~-~-----------~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~ 200 (439)
.++|+++.|.+. ..++++++|++++ ||+|+++.. . .+++ +.+|.+.....++..++++|+|+||+
T Consensus 29 ~~~l~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg-~~pDv~~~~~~~~~~~~~~g~l~~L~ 107 (414)
T 3quf_A 29 KTKISFYSYFKDNQIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGG-KPPTIFNLTMDNRTDVMKSGAALDIS 107 (414)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHSS-SCCSEEEECTTTHHHHHHHTCBCCCT
T ss_pred CEEEEEEecCCchHHHHHHHHHHHHCcCeEEEEEeCCChHHHHHHHHHHHhCC-CCCCEEEECCcchHHHHhCCeeecCC
Confidence 458899998864 4578999999998 999999731 0 0112 22444445677899999999999999
Q ss_pred ccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCC-CCCCcccccCc--ccc--Cce
Q 044097 201 EAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLA-PIEDWKDPWWP--ELA--GRI 275 (439)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~-~P~TW~DL~dp--~lk--gkI 275 (439)
+. .+.+++.+.. ++. ..+ +|++||+|+..++.+|+||+++|+++|++ +|+||+||++. +++ |..
T Consensus 108 ~~---~~~~~~~~~~---~~~---~~~--dG~~y~vP~~~~~~~l~ynkdl~~~~G~~~~P~Twdel~~~~~~l~~~g~~ 176 (414)
T 3quf_A 108 GE---DFLDGIDDTN---FAL---FQQ--DGKTYGMPVSAWVGAFFYNKDILKKAGYDKFPKTWDEFIEMGKKINSNGST 176 (414)
T ss_dssp TC---GGGTTBCGGG---GGG---GEE--TTEECCBCCEEEEEEEEEEHHHHHHTTCSSCCSBHHHHHHHHHHHHHTTSE
T ss_pred cc---hhhhhcCHHH---Hhh---ccc--CCeEEEeccccceeEEEEeHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 74 2334444433 211 234 49999999999999999999999999998 99999999985 343 544
Q ss_pred eeccC----hhH----HHHh----C------------CH----H---HHHHHHHHHhhh--h----cccCchHHHHHhhc
Q 044097 276 SMVNS----PRE----VIVA----G------------GK----I---AVQQNLALLANQ--V----RLFDSTHYLKAFGI 318 (439)
Q Consensus 276 ~~~~~----~~~----~~~~----~------------G~----d---~~~e~L~~l~~~--v----~~~~~~~~~~~f~~ 318 (439)
.+... +.. ++.. . |. + .+.+.+.+|... + ..++.++..+.|.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ 256 (414)
T 3quf_A 177 AFLEDFNTQIAGSFTGLLASYYGEQGKSGDLDADIWSGKSTFTKDWTPVFKRWEAAAKAGVIPQKSVGLSADQVKQEFVS 256 (414)
T ss_dssp EECCCCSSSSCHHHHHHHHHHHHTTTCCSSTTHHHHTTSSCHHHHTHHHHHHHHHHHHTTSSCGGGTTCCHHHHHHHHHT
T ss_pred CeeccccccchHHHHHHHHHhhccccCchhHHHHHhcCCcccChHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHc
Confidence 33211 111 1110 1 10 1 233444444332 1 11223456789999
Q ss_pred CCeEEEEEccccHHHHHHcCCCeeEE-ccC--CC--c---eeeeeEEEEecCCC--CcccccCCCCCCCHHHHHHHHHHH
Q 044097 319 GDVWVAVGWSSDVLPAVKRMSNVAVV-VPK--SG--A---SLWADLWAIPAASR--LETKQIGGQVRGPSPLIHQWIEFC 388 (439)
Q Consensus 319 Ge~~~~i~ws~~~~~~~~~~~~v~~~-vP~--eG--~---~~~~~~~aI~k~a~--~~e~~~~~~~~~~~~aA~~FI~fl 388 (439)
|+++|.+.++..+..+.+.+.++++. +|. .| . ..+..+|+|+++++ |++ +|++||+||
T Consensus 257 G~~a~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~I~~~s~~~~~e------------~A~~fl~~l 324 (414)
T 3quf_A 257 GNLGVMRSGPWDLPDLQKSDIDFGVAPFPAYSKEDGQWINGGPDQGFAIASRASDKEKA------------AAKKFLAYL 324 (414)
T ss_dssp TCEEEEEECGGGHHHHHHSSCCEEEECBCBSSCTTCCBEEEEESCEEEEBSSSCHHHHH------------HHHHHHHHH
T ss_pred CCceEEEcCcccHHHHhhhccceeEEecCCcCCCCccceecccCccEEEECCCCccCHH------------HHHHHHHHH
Confidence 99999999888877776666677776 674 23 1 12345899999999 998 999999999
Q ss_pred hcHHhhHHHHhhcCCCCCCCc
Q 044097 389 LQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 389 lS~e~q~~~a~~~~g~~~P~~ 409 (439)
+|+|.|..+++. .++ .|..
T Consensus 325 ~s~e~~~~~~~~-~g~-~P~~ 343 (414)
T 3quf_A 325 NSEEGLEAFTSA-AGT-LSLS 343 (414)
T ss_dssp TSHHHHHHHHHH-HTC-EECB
T ss_pred cCHHHHHHHHHh-cCC-CCCc
Confidence 999999999875 345 5544
No 24
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=99.89 E-value=4.5e-22 Score=195.37 Aligned_cols=248 Identities=12% Similarity=0.101 Sum_probs=176.0
Q ss_pred ceeEEEEeCCCC-ccHHHHHHHHhhcCCeEEEEEeeecc--------cccccceEec--CchhHHHHHHCCCcccccccc
Q 044097 135 TVPLRVVSLQNS-VPQSWVKDFMRSQGKRLKFQMNLCAS--------IDGIVNNLST--PFNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 135 ~~~L~v~~w~~~-~~~~li~~Fek~~GI~V~~~~~~~~s--------~~~~~~dv~~--~~~~~~~~i~~Gll~pl~~~~ 203 (439)
..+|+|++|.+. ..++++++|++++||+|+++ ..... ......||+. +..++..++++|+|+||+...
T Consensus 5 ~~~l~v~~~~~~~~~~~~~~~F~~~~gi~V~~~-~~~~~~~~kl~~~~~~~~~Dv~~~~~~~~~~~~~~~g~l~~l~~~~ 83 (323)
T 1y9u_A 5 SDEVSLYTTREPKLIQPLLDAFAKDSGIKVNTV-FVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQSQT 83 (323)
T ss_dssp -CEEEEEESSCGGGTHHHHHHHHHHHCCEEEEE-ECSSCHHHHHHHHGGGCCCCEEEEESHHHHHHHHHTTCEECCCCHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhhCcEEEEE-eCcHHHHHHHHHhcCCCCCCEEEecChHHHHHHHHCCCeeeCChhh
Confidence 357899988765 45789999999999999986 31111 0111235553 447889999999999998631
Q ss_pred cchhhc-ccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCc-ccccCCCCCCCCcccccCccccCceeeccCh
Q 044097 204 DQDWFK-RLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKS-KFQNHNLAPIEDWKDPWWPELAGRISMVNSP 281 (439)
Q Consensus 204 ~~~~~~-~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd-~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~ 281 (439)
+. .+.+.+ .+.+| |++|+..++.+|+|||+ +|++ | ||+||++++++|++++.+..
T Consensus 84 ----~~~~~~~~~-----------~~~~g--~~~p~~~~~~~l~yNkd~~~~~-----P-tw~dl~~~~~~g~~~~~~~~ 140 (323)
T 1y9u_A 84 ----LDSVVPANL-----------RGAEG--SWYALSLRDRVLYVEKDLKLDS-----F-RYGDLADPKWKGKVCIRSGQ 140 (323)
T ss_dssp ----HHHHSCGGG-----------BCGGG--SCEEEEEEEEEEEEETTCCCCC-----C-BGGGGGCGGGTTCEECCCTT
T ss_pred ----hhhhccHhh-----------CCCCC--eEEEEecceeEEEEcCccccCC-----C-CHHHHhhHHhCCcEeecCCC
Confidence 11 222221 23347 78999999999999999 9986 6 99999999999998875432
Q ss_pred hH----HH----HhCCHHHHHHHHHHHhhhhccc--Cc-hHHHHHhhcCCeEEEEEccccHHHHHH-------cC--CCe
Q 044097 282 RE----VI----VAGGKIAVQQNLALLANQVRLF--DS-THYLKAFGIGDVWVAVGWSSDVLPAVK-------RM--SNV 341 (439)
Q Consensus 282 ~~----~~----~~~G~d~~~e~L~~l~~~v~~~--~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~-------~~--~~v 341 (439)
.. ++ ..+|.+.+.+++.+|.++...+ .. .+..+.|.+|+++|++.|+..+..+.. .+ .++
T Consensus 141 ~~~~~~~~~~~~~~~G~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (323)
T 1y9u_A 141 HPYNTALVAAMIAHDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAI 220 (323)
T ss_dssp SHHHHHHHHHHHHHHCHHHHHHHHHHHHHHBSSCSCSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHSCTTSHHHHHHHTE
T ss_pred cHhHHHHHHHHHHHhChHHHHHHHHHHHHccCcccCCCchHHHHHHhCCcceEEEecHHHHHHHhhccccccccCCCCce
Confidence 11 11 1346667778888887764322 22 356789999999999988776554432 11 247
Q ss_pred eEEcc------CCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCccccccc
Q 044097 342 AVVVP------KSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLV 415 (439)
Q Consensus 342 ~~~vP------~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~~~~~~ 415 (439)
.+++| ++|...+..+++|+++++|++ +|++||+||+|+|.|..+++. ++..|...+ +
T Consensus 221 ~~~~P~~~~~~~~g~~~~~~~~~i~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~~--~~~~P~~~~---~ 283 (323)
T 1y9u_A 221 KVVRPTFATAKDGGTHVNISGAAVAAHAPNKA------------NAVKLLEYLVSEPAQTLYAQA--NYEYPVRAG---V 283 (323)
T ss_dssp EEECCBCC----CCBCEEEEEEEEETTCTTHH------------HHHHHHHHHTSHHHHHHHHHH--TTCEESSTT---C
T ss_pred eEecCCCCCCCCCCeeeccceEEEEcCCCCHH------------HHHHHHHHHcCHHHHHHHHhc--cccccCCCC---C
Confidence 77788 456777788999999999999 999999999999999999864 344666532 4
Q ss_pred CCCHHHhc
Q 044097 416 KLPEELLK 423 (439)
Q Consensus 416 ~lp~el~~ 423 (439)
.+++++.+
T Consensus 284 ~~~~~~~~ 291 (323)
T 1y9u_A 284 KLDAVVAS 291 (323)
T ss_dssp CCCHHHHH
T ss_pred CCCccCCC
Confidence 46777754
No 25
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=99.89 E-value=8.4e-23 Score=208.47 Aligned_cols=244 Identities=11% Similarity=0.122 Sum_probs=162.6
Q ss_pred eeEEEEeCCCC--ccHHHHHHHHhhcCCeEEEEEeee-----------cccccccceEecCchhHHHHHHCCCccccccc
Q 044097 136 VPLRVVSLQNS--VPQSWVKDFMRSQGKRLKFQMNLC-----------ASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 136 ~~L~v~~w~~~--~~~~li~~Fek~~GI~V~~~~~~~-----------~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
++|+++.|.+. ..++++++|++++||+|+++.... .++ ..+|.+..+..++..++++|+|+||+..
T Consensus 35 ~~l~~w~~~~~~~~~~~~~~~F~~~~~i~V~~~~~~~~~~~~kl~~~~~sg-~~pDv~~~~~~~~~~~~~~g~l~~L~~~ 113 (416)
T 2xd3_A 35 KELTVYVDEGYKSYIEEVAKAYEKEAGVKVTLKTGDALGGLDKLSLDNQNG-NVPDVMMAPYDRVGSLGSDGQLSEVKLS 113 (416)
T ss_dssp -CCEEEECGGGHHHHHHHHHHHHHHSSCCCEEEECCHHHHHHTHHHHHHHS-CCCSEEEEEHHHHHHHHHTTCBCCCCCC
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHCCEEEEEeCChHHHHHHHHHHHhCC-CCCCEEEeCchhHHHHHHCCCeecCCHH
Confidence 46777777643 236899999999999999973211 112 2243344556788999999999999852
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--------
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA-------- 272 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk-------- 272 (439)
+. +++.+. .++. .. +.+|++||+|+..++.+|+|||++|++ +|+||+||++. +++
T Consensus 114 ---~~-~~~~~~---~~~~---~~-~~dG~~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~~~~ 178 (416)
T 2xd3_A 114 ---DG-AKTDDT---TKSL---VT-AANGKVYGAPAVIESLVMYYNKDLVKD----APKTFADLENLAKDSKYAFAGEDG 178 (416)
T ss_dssp ---GG-GCCCHH---HHHH---HB-CTTCCBCCEEEEEECCEEEEETTTCSS----CCCBHHHHHHHHHSGGGBCTTSTT
T ss_pred ---HH-hhCCHH---HHHh---he-eeCCeEEEEeeecCceEEEEEhhhhcC----CCCCHHHHHHHHHHhhcccccCCC
Confidence 22 333332 2221 12 135999999999999999999999997 79999999884 565
Q ss_pred CceeeccChhHH------HH-hCCH----------------H---HHHHHHHHHhh----hhcc--cCchHHHHHhhcCC
Q 044097 273 GRISMVNSPREV------IV-AGGK----------------I---AVQQNLALLAN----QVRL--FDSTHYLKAFGIGD 320 (439)
Q Consensus 273 gkI~~~~~~~~~------~~-~~G~----------------d---~~~e~L~~l~~----~v~~--~~~~~~~~~f~~Ge 320 (439)
|++++....... +. .+|. + .+.+++.++.. .... .+.++..+.|.+|+
T Consensus 179 g~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~g~~~~~~~~~~~~~~~~~~f~~G~ 258 (416)
T 2xd3_A 179 KTTAFLADWTNFYYTYGLLAGNGAYVFGQNGKDAKDIGLANDGSIVGINYAKSWYEKWPKGMQDTEGAGNLIQTQFQEGK 258 (416)
T ss_dssp CBCSEECCTTSHHHHHHHHHHTTCEEEHHHHTEEEEEETTSHHHHHHHHHHHHHHTTSCGGGGCSSCHHHHHHHHHHTTC
T ss_pred CceeeEEecCcchhHHHHHHhhCCcccCCCCCcccccccCCHHHHHHHHHHHHHHhcCCCccccccccHHHHHHHHhcCC
Confidence 444432211111 11 1220 1 23445555531 1111 11234568899999
Q ss_pred eEEEEEccccHHHHHHcCCCeeEE-ccC--CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHh
Q 044097 321 VWVAVGWSSDVLPAVKRMSNVAVV-VPK--SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTAR 393 (439)
Q Consensus 321 ~~~~i~ws~~~~~~~~~~~~v~~~-vP~--eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~ 393 (439)
++|.+.++..+..+.+.+.++++. +|. +| ...++.+++|+++++|++ +|++||+||+|+|.
T Consensus 259 ~am~~~g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~I~~~s~~~e------------~A~~fi~~l~s~e~ 326 (416)
T 2xd3_A 259 TAAIIDGPWKAQAFKDAKVNYGVATIPTLPNGKEYAAFGGGKAWVIPQAVKNLE------------ASQKFVDFLVATEQ 326 (416)
T ss_dssp CSEEEECGGGHHHHHHTTCCEEEECCCBCTTSCCCCCEEEEEEEECBTTCSCHH------------HHHHHHHHHHSHHH
T ss_pred eEEEecCcchhhhHHhcCCceEEEeCCCCCCCCcccccccceEEEEeCCCCCHH------------HHHHHHHHHcCHHH
Confidence 999998777666665555678876 775 23 234567899999999999 99999999999999
Q ss_pred hHHHHhhcCCCCCCCc
Q 044097 394 ALPFKQEVIPGASPSA 409 (439)
Q Consensus 394 q~~~a~~~~g~~~P~~ 409 (439)
|..+.+. .|+ .|..
T Consensus 327 ~~~~~~~-~g~-~P~~ 340 (416)
T 2xd3_A 327 QKVLYDK-TNE-IPAN 340 (416)
T ss_dssp HHHHHHH-HCC-EESS
T ss_pred HHHHHHh-cCC-CCCc
Confidence 9999865 344 5654
No 26
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=99.89 E-value=1.4e-22 Score=206.13 Aligned_cols=254 Identities=15% Similarity=0.124 Sum_probs=172.1
Q ss_pred ceeEEEEeCCC----CccHHHHHHHHhhc-CCeEEEEEee-----------ecccccccceEecCchhHHHHHHCCCccc
Q 044097 135 TVPLRVVSLQN----SVPQSWVKDFMRSQ-GKRLKFQMNL-----------CASIDGIVNNLSTPFNKLSFAIKKRFIEP 198 (439)
Q Consensus 135 ~~~L~v~~w~~----~~~~~li~~Fek~~-GI~V~~~~~~-----------~~s~~~~~~dv~~~~~~~~~~i~~Gll~p 198 (439)
.++|+++.|.+ ...++++++|++++ ||+|+++... ..++++.+|.+.....++..++++|+|+|
T Consensus 27 ~~~l~~w~~~~~~~~~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~~~~~~~~~~~~g~l~~ 106 (412)
T 3k01_A 27 SGTVTFWDTSNEAEKATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEVAWVADFASIGYLAP 106 (412)
T ss_dssp CEEEEEEECCCTTTHHHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEEHHHHHHHHHTTCBCC
T ss_pred CcEEEEecCCCCcchHHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEecCccHHHHHhcCCccc
Confidence 45788888876 34468999999995 9999997321 11233235444556678999999999999
Q ss_pred ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc---C
Q 044097 199 IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA---G 273 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk---g 273 (439)
|++.. .....++..+.+++. ..+| |++||+|+..++.+|+||+++|+++|+++|+||+||++. +++ |
T Consensus 107 L~~~~---~~~~~~~~~~~~~~~---~~~d--G~~y~vP~~~~~~~l~ynkdl~~~~Gl~~P~Twdel~~~~~~l~~~~g 178 (412)
T 3k01_A 107 LDGTP---ALDDGSDHLPQAAAS---TRYE--GKTYAVPQVIDTLALFYNKELLTKAGVEVPGSVAELKTAAAEITEKTG 178 (412)
T ss_dssp CTTSG---GGCSCTTBCHHHHHT---TEET--TEECCEEEEEEECEEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHHHS
T ss_pred Cchhc---cccchhhcCHHHHHh---cccC--CcEEEeeeecceeEEEEEHHHHHHcCCCCCCCHHHHHHHHHHHhcccC
Confidence 99852 123344444444432 2344 999999999999999999999999999999999999985 343 5
Q ss_pred ceeec---cChhH---HH-HhCC-------H------H---HHHHHHHHHhhh--hc-c--cCchHHHHHhhcCCeEEEE
Q 044097 274 RISMV---NSPRE---VI-VAGG-------K------I---AVQQNLALLANQ--VR-L--FDSTHYLKAFGIGDVWVAV 325 (439)
Q Consensus 274 kI~~~---~~~~~---~~-~~~G-------~------d---~~~e~L~~l~~~--v~-~--~~~~~~~~~f~~Ge~~~~i 325 (439)
..++. ..... ++ ..+| . + .+.+.+.++... +. . .+.++..+.|.+|+++|.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~f~~G~~a~~~ 258 (412)
T 3k01_A 179 ATGLYLRGDDPYWFLPYLYGEGGDLVDEKNKTVTVDDEAGVRAYRVIKDLVDSKAAITDASDGWNNMQNAFKSGKVAMMV 258 (412)
T ss_dssp CEEEECCCSCGGGGHHHHHHTTCCSEETTTTEECTTSHHHHHHHHHHHHHHHTTSEECCSSCHHHHHHHHHHHTSEEEEE
T ss_pred CCceeeCCcchHHHHHHHHHcCCceECCCCCeeccCCHHHHHHHHHHHHHHHcCCCCCCcccchhhHHHHHhcCCEEEEE
Confidence 44421 11111 11 1111 1 2 244455555432 10 1 1223567899999999999
Q ss_pred EccccHHHHHHcC-----CCeeEE-ccC--CC--ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhH
Q 044097 326 GWSSDVLPAVKRM-----SNVAVV-VPK--SG--ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARAL 395 (439)
Q Consensus 326 ~ws~~~~~~~~~~-----~~v~~~-vP~--eG--~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~ 395 (439)
.++..+..+.... .++++. +|. .| ...++.+++|+++++|++ +|++||+||+|+|.|.
T Consensus 259 ~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~q~ 326 (412)
T 3k01_A 259 NGPWAIEDVKAGARFKDAGNLGVAPVPAGSAGQGSPQGGWNLSVYAGSKNLD------------ASYAFVKYMSSAKVQQ 326 (412)
T ss_dssp ECGGGHHHHHTSTTCSSGGGEEEEECCBCSSCCCEEEEEEEEEEBTTCSCHH------------HHHHHHHHHHSHHHHH
T ss_pred CCccchHhhhhccccCccceeEEEeCCCCCCCCccccCceeEEEeCCCCCHH------------HHHHHHHHHcCHHHHH
Confidence 8776665554422 236665 664 12 355667899999999999 9999999999999999
Q ss_pred HHHhhcCCCCCCCcc
Q 044097 396 PFKQEVIPGASPSAL 410 (439)
Q Consensus 396 ~~a~~~~g~~~P~~~ 410 (439)
.+++. .++ .|...
T Consensus 327 ~~~~~-~g~-~P~~~ 339 (412)
T 3k01_A 327 QTTEK-LSL-LPTRT 339 (412)
T ss_dssp HHHHH-HCC-CBSBG
T ss_pred HHHHh-cCC-CCcch
Confidence 99875 344 56553
No 27
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=99.88 E-value=2.4e-22 Score=217.80 Aligned_cols=245 Identities=16% Similarity=0.143 Sum_probs=166.8
Q ss_pred eeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEeeeccc----------ccccceEecCchhHHHHHHCCCccccccc
Q 044097 136 VPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNLCASI----------DGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 136 ~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~~~s~----------~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
++|+||..++. ..++++++|++++||+|+++ ..++. .+.+|.+..+..++..++++|+|+||+++
T Consensus 5 geLtvW~~~d~~~~~l~ei~~~Fek~~gIkV~~~--~~~~~~~kl~~~~asG~~PDV~~~~~~~~~~~~~~G~L~pL~~~ 82 (637)
T 4dxb_A 5 GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVE--HPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLLAEITPD 82 (637)
T ss_dssp TSEEEECCTTSCHHHHHHHHHHHHHHHSCCEEEE--CCTTHHHHHHHHHHHTCSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CEEEEEecCCccHHHHHHHHHHHhhccCcEEEEE--eCCCHHHHHHHHHhcCCCCeEEEEChHHHHHHHHCCCEeeCCcC
Confidence 46788765443 23679999999999999987 22221 12244444667899999999999999875
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cc--ee
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GR--IS 276 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gk--I~ 276 (439)
. ...+++.+. +++. ..+| |++||+|+.+++.+|+|||++|++ +|+||+||++. +++ +. +.
T Consensus 83 ~--~~~d~~~~~---~~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdlf~e----~P~TwdEl~~~a~klk~~~~~~~~ 148 (637)
T 4dxb_A 83 K--AFQDKLYPF---TWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (637)
T ss_dssp H--HHHTTBCHH---HHHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCCSBC
T ss_pred h--hhHhhcCHH---HHHh---cEEC--CEEEEEEEecceEEEEEEcHHhcC----CCCCHHHHHHHHHHhhhcCCCccc
Confidence 2 222334333 3322 2354 999999999999999999999997 79999999875 333 22 22
Q ss_pred ec-cChhHH---H-HhCC------------------HHH---HHHHHHHHhhhhc---ccCchHHHHHhhcCCeEEEEEc
Q 044097 277 MV-NSPREV---I-VAGG------------------KIA---VQQNLALLANQVR---LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 277 ~~-~~~~~~---~-~~~G------------------~d~---~~e~L~~l~~~v~---~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
+. ...... + ..+| .+. +.+++.++...-. ..+.++..+.|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~am~~~g 228 (637)
T 4dxb_A 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (637)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCCSEEEEC
T ss_pred cCCCcchhhhHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCEEEEEeC
Confidence 21 111111 1 1111 023 3445555543311 1122456688999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-----CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-----eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
++.+..+.+.+.++++. +|. .+...++.+|+|+++++|++ +|++||+ ||+|+|+|..+.+.
T Consensus 229 ~w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~fl~s~E~q~~~~~~ 296 (637)
T 4dxb_A 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (637)
T ss_dssp GGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCCCceEeeeeEEEEECCCCCHH------------HHHHHHHHHhCCHHHHHHHHHh
Confidence 88777776667788875 673 22345678999999999999 9999996 89999999999876
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.|+.+|..
T Consensus 297 -~g~~p~~~ 304 (637)
T 4dxb_A 297 -KPLGAVAL 304 (637)
T ss_dssp -SCCSEESB
T ss_pred -CCCCCCch
Confidence 56655554
No 28
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=99.87 E-value=5.3e-21 Score=192.75 Aligned_cols=245 Identities=16% Similarity=0.164 Sum_probs=165.9
Q ss_pred ceeEEEEeCCCC--ccHHHHHHHHhhcCCeEEEEEeee-----------cccccccceEecCchhHHHHHHCCCcccccc
Q 044097 135 TVPLRVVSLQNS--VPQSWVKDFMRSQGKRLKFQMNLC-----------ASIDGIVNNLSTPFNKLSFAIKKRFIEPIAE 201 (439)
Q Consensus 135 ~~~L~v~~w~~~--~~~~li~~Fek~~GI~V~~~~~~~-----------~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~ 201 (439)
+++|+++..... ..++++++|++++||+|+++.... +++ ..+|.+.....++..++++|+|+||+.
T Consensus 2 ~~~l~~w~~~~~~~~~~~~~~~F~~~~~i~V~~~~~~~~~~~~kl~~~~~~g-~~pDv~~~~~~~~~~~~~~g~l~~L~~ 80 (382)
T 2gha_A 2 QPKLTIWCSEKQVDILQKLGEEFKAKYGVEVEVQYVNFQDIKSKFLTAAPEG-QGADIIVGAHDWVGELAVNGLIEPIPN 80 (382)
T ss_dssp CCEEEEEECTTTHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHGGGT-CSCSEEEEEGGGHHHHHHTTCBCCCCC
T ss_pred CcEEEEEeCCchhHHHHHHHHHHHHHcCcEEEEEecChHHHHHHHHHHhhCC-CCCCEEEeCcccHHHHHhCCCcccCCc
Confidence 357777773222 346899999999999999973211 122 224444456678999999999999997
Q ss_pred cccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc-----Cc
Q 044097 202 AEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA-----GR 274 (439)
Q Consensus 202 ~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk-----gk 274 (439)
.. + ..++.+ .+++. ..+ +|++||+|+..++.+|+|||++|++ +|+||+||++. +++ |+
T Consensus 81 ~~--~-~~~~~~---~~~~~---~~~--dG~~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~~~~g~ 145 (382)
T 2gha_A 81 FS--D-LKNFYE---TALNA---FSY--GGKLYGIPYAMEAIALIYNKDYVPE----PPKTMDELIEIAKQIDEEFGGEV 145 (382)
T ss_dssp CT--T-GGGBCH---HHHHH---TEE--TTEECCEEEEEECCEEEEETTTCSS----CCSBHHHHHHHHHHHHHHTTTSS
T ss_pred hh--h-hhhcCH---HHHHh---cEE--CCEEEEEeeeccceEEEEehhhccC----CchhHHHHHHHHHHHhccCCCCe
Confidence 52 1 233333 22321 234 4999999999999999999999997 89999999983 554 55
Q ss_pred eeeccChhH------HHH-hCC------------------HH---HHHHHHHHHhhh-h--cccCchHHHHHhhcCCeEE
Q 044097 275 ISMVNSPRE------VIV-AGG------------------KI---AVQQNLALLANQ-V--RLFDSTHYLKAFGIGDVWV 323 (439)
Q Consensus 275 I~~~~~~~~------~~~-~~G------------------~d---~~~e~L~~l~~~-v--~~~~~~~~~~~f~~Ge~~~ 323 (439)
+++..+... ++. .+| .+ .+.+.+.+|.+. + ...+.++..+.|.+|+++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am 225 (382)
T 2gha_A 146 RGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVKLLKRLVDEGILDPSDNYQIMDSMFREGQAAM 225 (382)
T ss_dssp EEEECCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEE
T ss_pred eeEEecCcchHHHHHHHHhCCCeeeccCCCCccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCccE
Confidence 554322111 111 122 01 344555555442 1 1122345668899999999
Q ss_pred EEEccccHHHHHHcCCCeeEE-ccC--CCc----eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhH
Q 044097 324 AVGWSSDVLPAVKRMSNVAVV-VPK--SGA----SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARAL 395 (439)
Q Consensus 324 ~i~ws~~~~~~~~~~~~v~~~-vP~--eG~----~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~ 395 (439)
.+.++..+..+.+.+.+++++ +|. +|. ..++.+++|+++++|++ +|++|| +||+|+|.|.
T Consensus 226 ~~~g~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fi~~~l~s~e~~~ 293 (382)
T 2gha_A 226 IINGPWAIKAYKDAGIDYGVAPIPDLEPGVPARPFVGVQGFMVNAKSPNKL------------LAIEFLTSFIAKKETMY 293 (382)
T ss_dssp EEECGGGHHHHHHTTCCEEEECCCBSBTTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTTSHHHHH
T ss_pred EEcCHHHHHHHHhcCCceEEEeCCCCCCCCCCcccccceEEEEeCCCCCHH------------HHHHHHHHHhcCHHHHH
Confidence 998776665555545677876 785 453 34567899999999999 999999 9999999999
Q ss_pred HHHhhcCCCCCCCc
Q 044097 396 PFKQEVIPGASPSA 409 (439)
Q Consensus 396 ~~a~~~~g~~~P~~ 409 (439)
.+.+. .|+ .|..
T Consensus 294 ~~~~~-~g~-~P~~ 305 (382)
T 2gha_A 294 RIYLG-DPR-LPSR 305 (382)
T ss_dssp HHHHH-SCS-EESB
T ss_pred HHHHh-cCC-CCCc
Confidence 99865 344 5654
No 29
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=99.87 E-value=1.7e-20 Score=188.94 Aligned_cols=249 Identities=14% Similarity=0.075 Sum_probs=162.2
Q ss_pred ceeEEEEeCCC----CccHHHHHHHHhhc-CCeEEEEEe------ee---cccccccceEecCchhHHHHHHCCCccccc
Q 044097 135 TVPLRVVSLQN----SVPQSWVKDFMRSQ-GKRLKFQMN------LC---ASIDGIVNNLSTPFNKLSFAIKKRFIEPIA 200 (439)
Q Consensus 135 ~~~L~v~~w~~----~~~~~li~~Fek~~-GI~V~~~~~------~~---~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~ 200 (439)
.++|+++.+.+ ...++++++|++++ ||+|+++.. +. +++ ..++.+.....++..++++|+|+||+
T Consensus 5 ~~~l~~W~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~kl~~~~~~g-~~PDv~~~~~~~~~~~~~~g~l~~L~ 83 (381)
T 1elj_A 5 EGKVVIWHAMQPNELEVFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTG-QGPDLFIWAHDWIGKFAEAGLLEPID 83 (381)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTT-CSCSEEEEEGGGHHHHHHTTCBCCCT
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHHCCCcEEEEEECCcHHHHHHHHHhcC-CCCcEEEeCCccHHHHHHCCCeecCh
Confidence 35677766532 13368999999998 999999731 10 112 22333334678899999999999999
Q ss_pred ccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--C--c
Q 044097 201 EAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--G--R 274 (439)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--g--k 274 (439)
.... +.+. ++..+..++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. +++ | +
T Consensus 84 ~~~~-~~~~--~~~~~~~~~~---~~~d--Gk~ygvP~~~~~~~l~YNkdlf~~----~P~Twdel~~~a~~l~~~~~~~ 151 (381)
T 1elj_A 84 EYVT-EDLL--NEFAPMAQDA---MQYK--GHYYALPFAAETVAIIYNKEMVSE----PPKTFDEMKAIMEKYYDPANEK 151 (381)
T ss_dssp TTCC-HHHH--TTBCHHHHHH---TEET--TEECEEEEEEEECEEEEETTTCSS----CCSSHHHHHHHHHHHCBGGGTB
T ss_pred hhhh-hhhh--hhhcHHHHHH---eEEC--CEEEEeccccceeEEEEehHhhcc----CcccHHHHHHHHHHhcCCCCCe
Confidence 7531 1110 2222222321 2354 999999999999999999999997 79999999864 332 2 3
Q ss_pred eeeccC--hhHH--HH--hCC-------H------HHH---HHHHHHHhhh-hc-ccCchHHHHHhhcCCeEEEEEcccc
Q 044097 275 ISMVNS--PREV--IV--AGG-------K------IAV---QQNLALLANQ-VR-LFDSTHYLKAFGIGDVWVAVGWSSD 330 (439)
Q Consensus 275 I~~~~~--~~~~--~~--~~G-------~------d~~---~e~L~~l~~~-v~-~~~~~~~~~~f~~Ge~~~~i~ws~~ 330 (439)
+++... .... +. .+| . +.+ .+.+.+|... .. ..+.++..+.|.+|+++|.+.++..
T Consensus 152 ~g~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~ 231 (381)
T 1elj_A 152 YGIAWPINAYFISAIAQAFGGYYFDDKTEQPGLDKPETIEGFKFFFTEIWPYMAPTGDYNTQQSIFLEGRAPMMVNGPWS 231 (381)
T ss_dssp CSCBCCCSHHHHHHHHTTTSCCSEETTTTEECTTSHHHHHHHHHHHHHTGGGSCSCCCHHHHHHHHHTTSSSEEEECGGG
T ss_pred EEEEccCchHHHHHHHHhcCCeeecCCCCccCCCCHHHHHHHHHHHHHhhccCCCCCChhHHHHHHhcCCeeEEecCchh
Confidence 443211 1111 11 222 1 223 3444444321 11 0222345678999999999987776
Q ss_pred HHHHHHcCCCeeEE-ccC---CC------ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhc-HHhhHHHHh
Q 044097 331 VLPAVKRMSNVAVV-VPK---SG------ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQ-TARALPFKQ 399 (439)
Q Consensus 331 ~~~~~~~~~~v~~~-vP~---eG------~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS-~e~q~~~a~ 399 (439)
+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++||+|+++ +|.|..+.+
T Consensus 232 ~~~~~~~~~~~g~~~~P~~~~~g~~~~~~~~~g~~~~~i~~~s~~~e------------~A~~fi~~l~~~~e~~~~~~~ 299 (381)
T 1elj_A 232 INDVKKAGINFGVVPLPPIIKDGKEYWPRPYGGVKLIYFAAGIKNKD------------AAWKFAKWLTTSEESIKTLAL 299 (381)
T ss_dssp HHHHHHTTCCEEEECCCCEEETTEEECCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHHHHCHHHHHHHHH
T ss_pred hhHHHhcCCceeEEeCCCcCCCCccCCCCccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHH
Confidence 65555555678876 784 34 234567899999999999 99999999999 999999886
Q ss_pred hcCCCCCCCcc
Q 044097 400 EVIPGASPSAL 410 (439)
Q Consensus 400 ~~~g~~~P~~~ 410 (439)
. .|+ .|...
T Consensus 300 ~-~g~-~P~~~ 308 (381)
T 1elj_A 300 E-LGY-IPVLT 308 (381)
T ss_dssp H-HCC-BCCBG
T ss_pred h-cCC-CCCch
Confidence 5 344 56553
No 30
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=99.86 E-value=4e-21 Score=196.02 Aligned_cols=247 Identities=13% Similarity=0.082 Sum_probs=166.1
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEeee-----------cccccccceEecCchhHHHHHHCCCccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNLC-----------ASIDGIVNNLSTPFNKLSFAIKKRFIEPIA 200 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~~-----------~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~ 200 (439)
.++|+++.+.+. ..++++++|++++||+|+++.... .++ ..+|.+.....++..++++|+|+||+
T Consensus 40 ~~tl~~w~~~~~~~~~~~~~~~~f~~~~gi~V~~~~~~~~~~~~kl~~~~~sg-~~pDv~~~~~~~~~~~~~~g~l~~L~ 118 (420)
T 4hw8_A 40 PNQLTMWVDGDKQMAFYKKITDQYTKKTGIKVKLVNIGQNDQLENISLDAPAG-KGPDIFFLAHDNTGSAYLQGLAAEIK 118 (420)
T ss_dssp CSEEEEEESSHHHHHHHHHHHHHHHHHHCCEEEEEECCTTTHHHHHHHHGGGT-CSCSEEEEEGGGHHHHHHTTCEECCC
T ss_pred CeEEEEecCCCcchHHHHHHHHHHHHHhCCEEEEEecCchhHHHHHHHHHhcC-CCCCEEEECcchHHHHHhcCCcccCC
Confidence 457777764322 336799999999999999973211 112 22444445678899999999999999
Q ss_pred ccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--C--c
Q 044097 201 EAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--G--R 274 (439)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--g--k 274 (439)
... ....++.+.. ++. ..+| |++||+|+..++.+|+||+++|+++ |+||+||++. +++ + .
T Consensus 119 ~~~--~~~~~~~~~~---~~~---~~~d--G~~y~vP~~~~~~~l~Ynkdl~~~~----P~Twdel~~~~~~l~~~~~~~ 184 (420)
T 4hw8_A 119 LSK--DELKGFNKQA---LKA---MNYD--NKQLALPAIVETTALFYNKKLVKNA----PQTLEEVEANAAKLTDSKKKQ 184 (420)
T ss_dssp CCH--HHHTTBCHHH---HHH---TEET--TEECEEEEEEECCEEEEETTTCCSC----CCBHHHHHHHHHHHCBTTTTB
T ss_pred cch--hhhhhcCHHH---HHh---eEEC--CEEEEeeeeccceEEEEEhhhhhhC----CCCHHHHHHHHHHHhccCCce
Confidence 642 2334444332 322 2344 9999999999999999999999984 9999999985 343 2 2
Q ss_pred eeeccCh---hHH--HH--hC--------C--------H--HH---HHHHHHHHhhh--h-cccCchHHHHHhhcCCeEE
Q 044097 275 ISMVNSP---REV--IV--AG--------G--------K--IA---VQQNLALLANQ--V-RLFDSTHYLKAFGIGDVWV 323 (439)
Q Consensus 275 I~~~~~~---~~~--~~--~~--------G--------~--d~---~~e~L~~l~~~--v-~~~~~~~~~~~f~~Ge~~~ 323 (439)
+++.... ... +. .+ | . +. +++.+.+|... + .....++..+.|.+|+++|
T Consensus 185 ~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~ 264 (420)
T 4hw8_A 185 YGMLFDAKNFYFNYPFLFGNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKWYDKGYLPKAATHDVMIGLFKEGKVGQ 264 (420)
T ss_dssp EEEECCTTSHHHHHHHHCCTTCCSEEESSSSEEEEEECTTCHHHHHHHHHHHHHHHTTSSCSSCCHHHHHHHHHTTCEEE
T ss_pred eEEEecCccHHHHHHHHHhcCCceeccCCCcccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCcchHHHHhhcCceEE
Confidence 4442211 111 11 11 1 1 22 44555555432 1 1122345678999999999
Q ss_pred EEEccccHHHHHHc-CCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHH
Q 044097 324 AVGWSSDVLPAVKR-MSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALP 396 (439)
Q Consensus 324 ~i~ws~~~~~~~~~-~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~ 396 (439)
.+.++..+..+.+. +.+++++ +|. .| ...+..+|+|+++++|++ +|++||+||+|+|.|..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~q~~ 332 (420)
T 4hw8_A 265 FVTGPWNINEYQETFGKDLGVTTLPTDGGKPMKPFLGVRGWYLSEYSKHKY------------WAKDLMLYITSKDTLQK 332 (420)
T ss_dssp EEECSTTHHHHHHHHGGGEEEECCCEETTEECCCEEEEEEEEEETTCSCHH------------HHHHHHHHTTSHHHHHH
T ss_pred EEeCCccHHHHHhhcCCCeEEEeCCCCCCCCCCcccccceEEEeCCCCCHH------------HHHHHHHHHhCHHHHHH
Confidence 99988877666554 4567765 664 22 334567999999999999 99999999999999999
Q ss_pred HHhhcCCCCCCCcc
Q 044097 397 FKQEVIPGASPSAL 410 (439)
Q Consensus 397 ~a~~~~g~~~P~~~ 410 (439)
+++. .++ .|...
T Consensus 333 ~~~~-~g~-~P~~~ 344 (420)
T 4hw8_A 333 YTDE-MSE-ITGRV 344 (420)
T ss_dssp HHHH-HCC-CBSBT
T ss_pred HHHh-cCC-CCCch
Confidence 9875 344 56553
No 31
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=99.86 E-value=5.8e-21 Score=193.72 Aligned_cols=246 Identities=13% Similarity=0.127 Sum_probs=164.6
Q ss_pred ceeEEEEeCCC--C--ccHHHHHHHHhhcCCeEEEEEeeec-cc---------ccccceE-e-cCchhHHHHHHCCCccc
Q 044097 135 TVPLRVVSLQN--S--VPQSWVKDFMRSQGKRLKFQMNLCA-SI---------DGIVNNL-S-TPFNKLSFAIKKRFIEP 198 (439)
Q Consensus 135 ~~~L~v~~w~~--~--~~~~li~~Fek~~GI~V~~~~~~~~-s~---------~~~~~dv-~-~~~~~~~~~i~~Gll~p 198 (439)
+++|+++.|.+ . ..++++++|++++||+|+++....+ .. .+..+|| . ....++..++++|+|+|
T Consensus 29 ~~tl~~w~~~~~~~~~~~~~~~~~F~~~~~i~V~~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~~g~l~~ 108 (402)
T 1urs_A 29 GQTITVWSWQTGPELQDVKQIAAQWAKAHGDKVIVVDQSSNPKGFQFYATAARTGKGPDVVFGMPHDNNGVFAEEGLMAP 108 (402)
T ss_dssp -CEEEEEESCCHHHHHHHHHHHHHHHHHHCCEEEEEECTTCTTCTTHHHHHHHTTCCCSEEEEEEGGGHHHHHHTTCBCC
T ss_pred CCEEEEeeCCCcchhHHHHHHHHHHHHhcCCeEEEEecCCcccHHHHHHHHhhCCCCCcEEEecChhhHHHHHHCCCeec
Confidence 46889998876 2 3368999999999999999732211 11 0112344 4 46678999999999999
Q ss_pred ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeec
Q 044097 199 IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMV 278 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~ 278 (439)
|+.. ..+..++. +..++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++ + +|++++.
T Consensus 109 L~~~--~~~~~~~~---~~~~~~---~~~d--G~~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~-~-~g~~g~~ 172 (402)
T 1urs_A 109 VPSG--VLNTGLYA---PNTIDA---IKVN--GTMYSVPVSVQVAAIYYNKKLVPQ----PPQTWAEFVK-D-ANAHGFM 172 (402)
T ss_dssp CCTT--SCCGGGSC---HHHHHT---TEET--TEECSEEEEEEECEEEEETTTCSS----CCCSHHHHHH-H-HHHHCEE
T ss_pred CCcc--hhhhhhcC---HHhHhh---eEEC--CEEEEecccCcccEEEEehhhhcc----CCCCHHHHHh-c-cCcceee
Confidence 9742 11122332 222321 2344 999999999999999999999997 7999999998 4 5544432
Q ss_pred cChhH------HHH-hCC-------------H-----HH---HHHHHHHHhhhhcc----cCchHHHHHhhcCCeEEEEE
Q 044097 279 NSPRE------VIV-AGG-------------K-----IA---VQQNLALLANQVRL----FDSTHYLKAFGIGDVWVAVG 326 (439)
Q Consensus 279 ~~~~~------~~~-~~G-------------~-----d~---~~e~L~~l~~~v~~----~~~~~~~~~f~~Ge~~~~i~ 326 (439)
..... ++. .+| . +. +++++.+|...... ...++..+.|.+|+++|.+.
T Consensus 173 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~~am~~~ 252 (402)
T 1urs_A 173 YDQANLYFDYAIIGGYGGYVFKDNNGTLDPNNIGLDTPGAVQAYTLMRDMVSKYHWMTPSTNGSIAKAEFLAGKIGMYVS 252 (402)
T ss_dssp CCTTCHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTSCSCCTTCCHHHHHHHHHTTCCSEEEE
T ss_pred ecCCChhhHHHHHHhcCCeeecCCccccccCccccCCHHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHHhcCCeeEEEc
Confidence 22111 111 121 1 22 34455555432111 12245678899999999998
Q ss_pred ccccHHHHHHcCCCeeEE-ccC--CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHh
Q 044097 327 WSSDVLPAVKRMSNVAVV-VPK--SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQ 399 (439)
Q Consensus 327 ws~~~~~~~~~~~~v~~~-vP~--eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~ 399 (439)
++..+..+.+.+.+++++ +|. +| ...+...++|+++++|++ +|++||+||+++|.|..+++
T Consensus 253 g~w~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~ 320 (402)
T 1urs_A 253 GPWDTADIEKAKIDFGVTPWPTLPNGKHATPFLGVITAFVNKESKTQA------------ADWSLVQALTSAQAQQMYFR 320 (402)
T ss_dssp CGGGHHHHHHTTCCEEEECCCCCTTSCCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHHTSHHHHHHHHH
T ss_pred CcchHHHHHhcCCceEEEeCCCCCCCCCccceecceEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHHHh
Confidence 877666655555678876 775 23 234567899999999999 99999999999999999986
Q ss_pred hcCCCCCCCcc
Q 044097 400 EVIPGASPSAL 410 (439)
Q Consensus 400 ~~~g~~~P~~~ 410 (439)
. .|+ .|...
T Consensus 321 ~-~g~-~P~~~ 329 (402)
T 1urs_A 321 D-SQQ-IPALL 329 (402)
T ss_dssp H-HCC-EESSH
T ss_pred h-cCC-CCCCh
Confidence 5 344 56543
No 32
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=99.86 E-value=2e-20 Score=189.17 Aligned_cols=247 Identities=13% Similarity=0.169 Sum_probs=166.5
Q ss_pred eeEEEEeCCCCc-----cHHHHHHHHhhcCCeEEEEEeeeccc----------ccccceEecCchhHHHHHHCCCccccc
Q 044097 136 VPLRVVSLQNSV-----PQSWVKDFMRSQGKRLKFQMNLCASI----------DGIVNNLSTPFNKLSFAIKKRFIEPIA 200 (439)
Q Consensus 136 ~~L~v~~w~~~~-----~~~li~~Fek~~GI~V~~~~~~~~s~----------~~~~~dv~~~~~~~~~~i~~Gll~pl~ 200 (439)
.+|+++.|++.. .++++++|++++||+|+++....+.. ...+|.+.....++..++++|+|+||+
T Consensus 19 ~~l~~w~~~~~~~~~~~~~~~~~~f~~~~~i~V~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~g~l~~L~ 98 (397)
T 2zyo_A 19 DKLVVWENADDGVQLNNTKKWAGEFTKKTGIQVEVVPVALLKQQEKLTLDGPAGKGADLVTWPHDRLGEAVTKGLLQPIQ 98 (397)
T ss_dssp SEEEEEECSSCHHHHHHHHHHHHHHHHHHCCEEEEEECCGGGHHHHHHHHHHHTCCCSEEEEEGGGHHHHHHTTCEECCC
T ss_pred CeEEEccCCCccchHHHHHHHHHHHHHHhCCeEEEEecchHhHHHHHHHHhhcCCCCcEEEeCchhHHHHHhCCCcccCC
Confidence 378888886532 36799999999999999973211110 122333345567899999999999999
Q ss_pred ccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc----Cc
Q 044097 201 EAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA----GR 274 (439)
Q Consensus 201 ~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk----gk 274 (439)
... ++..++.+.. ++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. +++ |+
T Consensus 99 ~~~--~~~~~~~~~~---~~~---~~~d--G~~y~~P~~~~~~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~~~g~ 164 (397)
T 2zyo_A 99 VDN--SVKNQFDDVA---MKA---LTYG--GKLYGLPKAIESVALIYNKKLMGQ----VPATYDELFQYAKANNKPDEQK 164 (397)
T ss_dssp CCH--HHHTTBCHHH---HHH---TEET--TEECEEEEEEECCEEEEETTTCSS----CCSBHHHHHHHHHHHCBGGGTB
T ss_pred chh--hhHhhcChHh---Hhh---eEEC--CEEEEecccccceEEEEehhhhcC----CCCCHHHHHHHHHHHhcCCCCe
Confidence 741 2233443332 221 2344 999999999999999999999997 79999999984 565 55
Q ss_pred eeeccChhH------HHH-hCC-------------H-----H---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEE
Q 044097 275 ISMVNSPRE------VIV-AGG-------------K-----I---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWV 323 (439)
Q Consensus 275 I~~~~~~~~------~~~-~~G-------------~-----d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~ 323 (439)
+++...... ++. .+| . + .+.+.+.+|... +. ..+.++..+.|.+|+++|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am 244 (397)
T 2zyo_A 165 YGVLFEANNFYYTYFLFAAKGAAVFKEQDGTLDPNEIGLNSPEAVQGMNEVQKWFTEARLPQSLKADTVNGLFKSGKVAA 244 (397)
T ss_dssp EEEEECTTCHHHHHHHHHHTTCCSEEEETTEEEEEEECTTSHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHTTCEEE
T ss_pred eeEEEecCcHHHHHHHHHhcCCeEEccCccCCCcCCcccCCHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCeeE
Confidence 544321111 111 111 0 2 234455555432 11 112245668899999999
Q ss_pred EEEccccHHHHHHcCCCeeEE-ccC-CCc----eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHH
Q 044097 324 AVGWSSDVLPAVKRMSNVAVV-VPK-SGA----SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPF 397 (439)
Q Consensus 324 ~i~ws~~~~~~~~~~~~v~~~-vP~-eG~----~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~ 397 (439)
.+.++..+..+.+.+.++++. +|. +|. ..+...++|+++++|++ +|++||+||+++|.|..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fi~~l~s~e~~~~~ 312 (397)
T 2zyo_A 245 VINGPWAIKDYQAAGINVGVAPLPKIDGKDAQTFIGVKGWYLSAYSKYPK------------YATELMQFLTSKEALASR 312 (397)
T ss_dssp EEECGGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEETTCSCHH------------HHHHHHHHTTSHHHHHHH
T ss_pred EEcCCccHHHHHhcCcceEEEecCCCCCCCCcceecceEEEEeCCCCCHH------------HHHHHHHHHcCHHHHHHH
Confidence 998877666655545578876 775 342 34567899999999999 999999999999999999
Q ss_pred HhhcCCCCCCCcc
Q 044097 398 KQEVIPGASPSAL 410 (439)
Q Consensus 398 a~~~~g~~~P~~~ 410 (439)
.+. .|+ .|...
T Consensus 313 ~~~-~g~-~P~~~ 323 (397)
T 2zyo_A 313 FKE-TGE-IPPQK 323 (397)
T ss_dssp HHH-HCC-BCCBH
T ss_pred HHH-cCC-CCCch
Confidence 875 344 66653
No 33
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=99.85 E-value=3.4e-21 Score=195.64 Aligned_cols=249 Identities=16% Similarity=0.246 Sum_probs=163.9
Q ss_pred ceeEEEEeCCCCc---cHHHHHHHHhhc-CCeEEEEEe---------eecccccccceEe-c-Cc-hhHHHHHHCCCccc
Q 044097 135 TVPLRVVSLQNSV---PQSWVKDFMRSQ-GKRLKFQMN---------LCASIDGIVNNLS-T-PF-NKLSFAIKKRFIEP 198 (439)
Q Consensus 135 ~~~L~v~~w~~~~---~~~li~~Fek~~-GI~V~~~~~---------~~~s~~~~~~dv~-~-~~-~~~~~~i~~Gll~p 198 (439)
.++|+++.|.+.. .++++++|++++ ||+|+++.. ..+++ . .+||+ . +. .++..++++|+|+|
T Consensus 18 ~~tl~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~kl~~~~~~g-~-~pDv~~~~~~~~~~~~~~~~g~l~~ 95 (401)
T 2heu_A 18 TVTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLAG-D-VPDVVNIYPQSIELQEWAKAGVFED 95 (401)
T ss_dssp SEEEEEECCCGGGHHHHHHHHHHHHHHCTTEEEEEECCTTHHHHHHHHHHTT-C-CCSEEECCTTSHHHHHHHHTTCBCC
T ss_pred CEEEEEEecCCcHHHHHHHHHHHHHHHCcCeEEEEEeCCcHHHHHHHHHhcC-C-CCCEEEecCCcchHHHHHhCCCeec
Confidence 4578888887653 468999999998 999998721 01112 2 34554 4 43 68899999999999
Q ss_pred ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cc
Q 044097 199 IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GR 274 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gk 274 (439)
|++.. +.+++.+.. ++. ..+ +|++||+|+..++.+|+|||++|+++|+++|+||+||++. +++ |.
T Consensus 96 L~~~~---~~~~~~~~~---~~~---~~~--dG~~y~vP~~~~~~~l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~~~g~ 164 (401)
T 2heu_A 96 LSNKD---YLKRVKNGY---AEK---YAV--NEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQ 164 (401)
T ss_dssp CTTCG---GGGGBCTTT---GGG---GCB--TTBCCCEECBBCCEEEEEEHHHHHHHTCCCCCSHHHHHHHHHHHHHTTS
T ss_pred CCchH---HHhhccHhh---hhh---eee--CCEEEEEecccCceEEEEeHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 98741 223333322 211 224 4999999999999999999999999999999999999984 454 33
Q ss_pred eee--cc--Chh--HHH-----HhC---------------CH-----HHHH---HHHHHHhhh--h-c---ccCchHHHH
Q 044097 275 ISM--VN--SPR--EVI-----VAG---------------GK-----IAVQ---QNLALLANQ--V-R---LFDSTHYLK 314 (439)
Q Consensus 275 I~~--~~--~~~--~~~-----~~~---------------G~-----d~~~---e~L~~l~~~--v-~---~~~~~~~~~ 314 (439)
+.+ .. .+. ..+ ..+ |. +.+. +.+.++... + . ..+.++..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~ 244 (401)
T 2heu_A 165 TPFGIAGADAWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIG 244 (401)
T ss_dssp CCBCCCTTCGGGGHHHHHHHHHHHHTSHHHHHHHHTSSCTTCCCTTSHHHHHHHHHHHGGGSTTCBCTTGGGCCHHHHHH
T ss_pred cCeEecCccccchhhHHHHHHHHhcCCcCChHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHCCCCCCCcCCCChHHHHH
Confidence 222 11 111 111 111 11 2233 344444321 1 0 112235678
Q ss_pred HhhcCCeEEEEEccccHHHHHHcCC--CeeEE-ccC--CCce--ee-ee-EEEEecCCCCcccccCCCCCCCHHHHHHHH
Q 044097 315 AFGIGDVWVAVGWSSDVLPAVKRMS--NVAVV-VPK--SGAS--LW-AD-LWAIPAASRLETKQIGGQVRGPSPLIHQWI 385 (439)
Q Consensus 315 ~f~~Ge~~~~i~ws~~~~~~~~~~~--~v~~~-vP~--eG~~--~~-~~-~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI 385 (439)
.|.+|+++|.+.++..+..+.+.++ ++++. +|. +|.. .+ .+ +++|+++++|++ +|++||
T Consensus 245 ~f~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~g~~~~~~i~~~s~~~e------------~A~~fi 312 (401)
T 2heu_A 245 AFARGDVLMTPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPK------------EANAFV 312 (401)
T ss_dssp HHHTTSSSEEEEETTHHHHHHTTCCSSCEEEECBCCSSTTCCBEEECBSSEEEEBTTCSCHH------------HHHHHH
T ss_pred HHHcCCceEEecCcccHHHHHhhCcccceeEEECCCCCCCCcccccCCcceEEEECCCCCHH------------HHHHHH
Confidence 8999999999987766555554433 46665 675 3332 23 24 599999999999 999999
Q ss_pred HHHhcHHhhHHHHhhcCCCCCCCcc
Q 044097 386 EFCLQTARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 386 ~fllS~e~q~~~a~~~~g~~~P~~~ 410 (439)
+|++|+|.|..+++. .|+ .|...
T Consensus 313 ~~l~s~e~~~~~~~~-~g~-~P~~~ 335 (401)
T 2heu_A 313 EYMTRPEVMQKYYDV-DGS-PTAIE 335 (401)
T ss_dssp HHHTSHHHHHHHHHH-HCC-CBCBT
T ss_pred HHHcChHHHHHHHHh-cCC-CCCcC
Confidence 999999999999865 344 55543
No 34
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=99.85 E-value=2e-20 Score=188.81 Aligned_cols=247 Identities=15% Similarity=0.140 Sum_probs=164.1
Q ss_pred eeEEEEeC-CC---CccHHHHHHHHhhcCCeEEEEEeee-----------cccccccceE-ec-CchhHHHHHHCCCccc
Q 044097 136 VPLRVVSL-QN---SVPQSWVKDFMRSQGKRLKFQMNLC-----------ASIDGIVNNL-ST-PFNKLSFAIKKRFIEP 198 (439)
Q Consensus 136 ~~L~v~~w-~~---~~~~~li~~Fek~~GI~V~~~~~~~-----------~s~~~~~~dv-~~-~~~~~~~~i~~Gll~p 198 (439)
++|+++.+ ++ ...++++++|++++||+|+++.... ++++ .+|| .. +..++..++++|+|+|
T Consensus 1 g~l~~W~~~~~~~~~~~~~~~~~f~~~~~i~V~~~~~~~~~~~~kl~~~~~~g~--~pDv~~~~~~~~~~~~~~~g~l~~ 78 (386)
T 2gh9_A 1 MKITVWTHFGGPELEWLKEQARTFERTSGTKVEVVEVPFAEIKQKFILGAPQGQ--AADLVVTVPHDWVGEMAQAGVLEP 78 (386)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHHHHTTSCCEEEEECCHHHHHHHHHHHGGGTC--SCSEEEEEEGGGHHHHHHTTCBCC
T ss_pred CEEEEEecCCchhHHHHHHHHHHHHHHhCCEEEEEeCChHHHHHHHHHHHhCCC--CCcEEEecCcchHHHHHhCCceec
Confidence 35777776 22 1336899999999999999973211 1222 3455 45 6788999999999999
Q ss_pred ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cc
Q 044097 199 IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GR 274 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gk 274 (439)
|++........++. +..++. ..+ +|++||+|+..++.+|+|||++|++ +|+||+||++. +++ |+
T Consensus 79 L~~~~~~~~~~~~~---~~~~~~---~~~--dG~~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~ 146 (386)
T 2gh9_A 79 VGKYVTQAYLADLQ---GVAVEA---FTF--GGRLMGLPAFAESVALIYNKKYVKE----PPRTWEEFLALAQKLTTGAT 146 (386)
T ss_dssp CGGGSCHHHHHHBC---HHHHHH---TEE--TTEECSEEEEEECCEEEEETTTCSS----CCSSHHHHHHHHHHHCSSSC
T ss_pred CchhhchhhHhhcc---HhhHhh---EEE--CCEEEEeccccceeEEEEehhhhcc----CCCCHHHHHHHHHHhhhCCE
Confidence 99753100112222 222221 234 4999999999999999999999997 89999999986 454 55
Q ss_pred eeeccChh---H---HH-HhCCH--------------------H---HHHHHHHHH-hhh--hc-ccCchHHHHHhhcCC
Q 044097 275 ISMVNSPR---E---VI-VAGGK--------------------I---AVQQNLALL-ANQ--VR-LFDSTHYLKAFGIGD 320 (439)
Q Consensus 275 I~~~~~~~---~---~~-~~~G~--------------------d---~~~e~L~~l-~~~--v~-~~~~~~~~~~f~~Ge 320 (439)
+++..... . ++ ..+|. + .+.+.+.+| .+. .. ..+.++..+.|.+|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~dg~~~~~~~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~~~~~~f~~G~ 226 (386)
T 2gh9_A 147 FGFLYNIGDPYFNFGFFKAFGAENVFAKDAKGNLDPTKLLIGGEVGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGA 226 (386)
T ss_dssp EEEECCTTCHHHHHHHHHHHTCSSSEEEETTTEEEEEEESSSHHHHHHHHHHHHHHHHTSCCSCTTCCHHHHHHHHHHTC
T ss_pred EEEEeecCchHHHHHHHHHcCCceEeeecccCCccccccccCCHHHHHHHHHHHHHHHhcCcCCCCCChHHHHHHHhCCC
Confidence 54432211 1 11 11221 1 234455555 332 11 112235668899999
Q ss_pred eEEEEEccccHHHHHHcCCCeeEE-ccC-CC------ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHH
Q 044097 321 VWVAVGWSSDVLPAVKRMSNVAVV-VPK-SG------ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTA 392 (439)
Q Consensus 321 ~~~~i~ws~~~~~~~~~~~~v~~~-vP~-eG------~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e 392 (439)
++|.+.++..+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++||+||+|+|
T Consensus 227 ~am~~~g~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s~e 294 (386)
T 2gh9_A 227 LAMILNGPWALGDYKKAKVDFGIAPFPVPPGAKNPWGPFLGVQGVVVNAYSKNKT------------QAVNFAKTLVTGR 294 (386)
T ss_dssp EEEEEECGGGHHHHHHTTCCEEEECCCCCTTCSSCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHHTSHH
T ss_pred eeEEEeCcHHHHHHHhcCCCeEEEecCCCCCCCCcccccccceEEEEECCCCCHH------------HHHHHHHHHhCHH
Confidence 999998777666555555678876 785 23 224567899999999999 9999999999999
Q ss_pred hhHHHHhhcCCCCCCCcc
Q 044097 393 RALPFKQEVIPGASPSAL 410 (439)
Q Consensus 393 ~q~~~a~~~~g~~~P~~~ 410 (439)
.|..+.+. .| ..|...
T Consensus 295 ~~~~~~~~-~g-~~P~~~ 310 (386)
T 2gh9_A 295 NLVAFNQA-GG-RIPVSK 310 (386)
T ss_dssp HHHHHHHH-SC-CEECBH
T ss_pred HHHHHHHh-cC-CCCCcH
Confidence 99998864 34 466653
No 35
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=99.85 E-value=1.9e-20 Score=195.02 Aligned_cols=247 Identities=17% Similarity=0.162 Sum_probs=168.6
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+|+.+++. ..++++++|++++||+|+++.. ..++++ .+|.+..+..++..++++|+|+||++.
T Consensus 6 ~~tL~vw~~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~-~pDv~~~~~~~~~~~~~~g~l~~L~~~ 84 (475)
T 3n94_A 6 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPD 84 (475)
T ss_dssp TTEEEEECCTTSCHHHHHHHHHHHHHHHSCEEEEECCTTHHHHHHHHHHTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CceEEEEeCCCccHHHHHHHHHHHhhccCcEEEEEeCccHHHHHHHHhcCCC-CCcEEEECCccHHHHHHCCCcccCCcc
Confidence 457888876654 3468999999999999999721 011222 244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. ++ +|+..+.
T Consensus 85 ~--~~~~~~~~~~---~~~---~~~d--Gk~yglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 150 (475)
T 3n94_A 85 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 150 (475)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred H--hHHhhcCHHh---Hhh---eEEC--CEEEEeeeeccceEEEEehHHhcc----CCCCHHHHHHHHHHHHhCCCceEE
Confidence 2 2233444332 221 2344 999999999999999999999995 89999999986 34 3544332
Q ss_pred c---ChhH---HH-HhCC------------------HH---HHHHHHHHHhhh--h-cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 N---SPRE---VI-VAGG------------------KI---AVQQNLALLANQ--V-RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~---~~~~---~~-~~~G------------------~d---~~~e~L~~l~~~--v-~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
- .... ++ ..+| .+ .+.+.+.++... + ...+.++..+.|.+|+++|.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g 230 (475)
T 3n94_A 151 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 230 (475)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEEC
T ss_pred eecCCchHHHHHHHhcCCceeecCCCCccccccccCCHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCEEEEecC
Confidence 1 1111 11 1111 02 344555555432 1 11222456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. .| ...++..++|+++++|++ +|++||+ |++|+|.|..+.+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~s~~~e------------~A~~fi~~~l~s~e~~~~~~~~ 298 (475)
T 3n94_A 231 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 298 (475)
T ss_dssp GGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred ccccChhhhcCCceEEEeCCCCCCCCCCccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHhh
Confidence 88877766666678876 574 12 245667899999999999 9999997 99999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 299 -~~~~~p~~ 306 (475)
T 3n94_A 299 -KPLGAVAL 306 (475)
T ss_dssp -SCCSEESB
T ss_pred -CCCCCCch
Confidence 44545654
No 36
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=99.85 E-value=1.3e-20 Score=198.42 Aligned_cols=247 Identities=17% Similarity=0.153 Sum_probs=168.7
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
+++|+||.+++. ..++++++|++++||+|+++.. ..++++ .+|.+..+..++..++++|+|+||++.
T Consensus 4 ~~tLtvw~~~~~~~~~~~~~i~~Fe~~~gI~V~~~~~~~~~~kl~~~~asg~-~PDv~~~~~~~~~~~~~~G~l~~L~~~ 82 (500)
T 3ob4_A 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPA 82 (500)
T ss_dssp SSSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTC-SCSEEEEEGGGHHHHHHTTCEECCCCC
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHhCcCcEEEEEeCccHHHHHHHHHhCCC-CCeEEEECchhHHHHHHCCceecCCcc
Confidence 457888866543 3468999999999999999721 112222 244445567899999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. ++ +|+..+.
T Consensus 83 ~--~~~~~~~~~~---~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 148 (500)
T 3ob4_A 83 A--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (500)
T ss_dssp H--HHHHHBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEEC
T ss_pred H--HHHhhcCHHH---HHh---eEEC--CEEEEEecccCceEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEE
Confidence 2 2223333332 221 2344 999999999999999999999995 89999999986 34 3554332
Q ss_pred c---ChhHH---H-HhCC------------------HH---HHHHHHHHHhhh--h-cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 N---SPREV---I-VAGG------------------KI---AVQQNLALLANQ--V-RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~---~~~~~---~-~~~G------------------~d---~~~e~L~~l~~~--v-~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
- ..... + ..+| .+ .+++++.++... + ...+.++..+.|.+|+++|.+.|
T Consensus 149 ~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g 228 (500)
T 3ob4_A 149 FNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (500)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEEC
T ss_pred eecCccHHHHHHHHHhCCeeecccCCccccCCcccCCHHHHHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCCeeEEecC
Confidence 1 11111 1 1111 02 344555555443 1 11223456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-C----CceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-S----GASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-e----G~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
++.+..+.+.+.+++++ +|. . +...++..++|+++++|++ +|++||+ |++|+|.|..+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~~ 296 (500)
T 3ob4_A 229 PWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (500)
T ss_dssp GGGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEETTCSCHH------------HHHHHHHHTTTSHHHHHHHHHH
T ss_pred chhHHHHHhcCCCeEEEECCCCCCCCccccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHhc
Confidence 88877766656677775 674 1 2345668899999999999 9999996 99999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 297 -~~~~~p~~ 304 (500)
T 3ob4_A 297 -KPLGAVAL 304 (500)
T ss_dssp -SCCSEESB
T ss_pred -CCCCCCch
Confidence 45545654
No 37
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=99.85 E-value=4.5e-21 Score=194.91 Aligned_cols=252 Identities=12% Similarity=0.059 Sum_probs=161.9
Q ss_pred ceeEEEEeCCCC-----ccHHHHHHHHhhcCCeEEEEEeeec----------ccccccceEe-c-CchhHHHHHHCCCcc
Q 044097 135 TVPLRVVSLQNS-----VPQSWVKDFMRSQGKRLKFQMNLCA----------SIDGIVNNLS-T-PFNKLSFAIKKRFIE 197 (439)
Q Consensus 135 ~~~L~v~~w~~~-----~~~~li~~Fek~~GI~V~~~~~~~~----------s~~~~~~dv~-~-~~~~~~~~i~~Gll~ 197 (439)
+++|+|+.|... ..++++++|+++++|+|+++....+ ++ . .+||+ . +..++..++++|+|+
T Consensus 27 ~~~lti~~~~~~~~~~~~~~~~~~~f~~~~~i~V~~~~~~~~~~~~kl~~~~ag-~-~pDv~~~~~~~~~~~~~~~g~l~ 104 (415)
T 3oo8_A 27 NGPITFGSNYSDEAPKAAFASLMQQATTSTTVPVTVNTTDHNTFQNNISNYLQG-T-PDSLATWFAGYRLQFFAAQGLLT 104 (415)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHS-S-CCSEEEEESSHHHHHHHHTTCBC
T ss_pred CceEEEEeecCCcchhHHHHHHHHHHHHhCCeeEEEEecChHHHHHHHHHHHcC-C-CCCEEEecCcchHHHHHHCCcee
Confidence 346778775432 3367999999999999999732111 12 2 24555 3 577899999999999
Q ss_pred cccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--C
Q 044097 198 PIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--G 273 (439)
Q Consensus 198 pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--g 273 (439)
||++.. ..+.+++.+. +++. ..+ .+|++||+|+..++.+|+|||++|+++|+++|+||+||++. +++ |
T Consensus 105 ~L~~~~-~~~~~~~~~~---~~~~---~~~-~~G~~y~vP~~~~~~~l~Ynkdl~~~~G~~~P~Twdel~~~~~~l~~~g 176 (415)
T 3oo8_A 105 PIDDVW-DKIGGTFNDA---AKSL---SKG-LDGHYYLVPLYNYPWVVFYNKSVFQSKGYEVPASWEAFIALARKMQSDG 176 (415)
T ss_dssp CCHHHH-HHHGGGSCHH---HHHH---TBC-TTSCBCEEEEEECCEEEEEEHHHHHHHTCCCCSBHHHHHHHHHHHHHTT
T ss_pred ccHHHH-HHHHhhcCHH---HHhh---ccc-cCCcEEEEecccceEEEEEeHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Confidence 999742 1111223332 2221 223 25999999999999999999999999999999999999985 333 4
Q ss_pred ce--eecc--Ch--hHHH-----HhCCH---------------HHH---HHHHHHHhhhhc----ccCchHHHHHhhcCC
Q 044097 274 RI--SMVN--SP--REVI-----VAGGK---------------IAV---QQNLALLANQVR----LFDSTHYLKAFGIGD 320 (439)
Q Consensus 274 kI--~~~~--~~--~~~~-----~~~G~---------------d~~---~e~L~~l~~~v~----~~~~~~~~~~f~~Ge 320 (439)
.. ++.. .. ...+ ...|. +.. .+.+.++...+. ..+.++..+.|.+|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~ 256 (415)
T 3oo8_A 177 LVPLAFADKDGWPALGTFDILNLRINGYDYHIKLMKHEVPWTDPGVTKVFDQWRELAAYQQKGANGRTWQDAAKALENKQ 256 (415)
T ss_dssp CEEEECCCTTSSTTHHHHHHHHHHHTCHHHHHHHHHTSSCTTSHHHHHHHHHHHHHGGGBCSSGGGCCHHHHHHHHHTTS
T ss_pred CCceeecCCCCCcHHHHHHHHHHhccCHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHcCC
Confidence 32 2221 11 1111 12232 123 344444444211 112245678999999
Q ss_pred eEEEEEcc-ccHHHHHH-cCCCeeEE-ccC-C---Cc---eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 044097 321 VWVAVGWS-SDVLPAVK-RMSNVAVV-VPK-S---GA---SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQ 390 (439)
Q Consensus 321 ~~~~i~ws-~~~~~~~~-~~~~v~~~-vP~-e---G~---~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS 390 (439)
++|.+.++ .....+.+ ...++++. +|. . |. ..++++++|+++++|++ +|++||+||+|
T Consensus 257 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s 324 (415)
T 3oo8_A 257 AGMMFQGSNQVAANYSAKNLPDLDFFVFPAINPQYGTDYMDAPTDGFILPKKGKNAA------------AAKKVLQYIGT 324 (415)
T ss_dssp EEEEEEEHHHHHHHSCTTTGGGEEEECCCBSSTTTTTCEEECCCEEEECBTTCSCHH------------HHHHHHHHHTS
T ss_pred eeEEEcccHhhhhcCCccccCCceEEeCCCCCCCCCCccccccCceEEEECCCCCHH------------HHHHHHHHHhC
Confidence 99988766 32222222 12356654 564 1 22 34567899999999999 99999999999
Q ss_pred HHhhHHHHh-hcCCCCCCCcc
Q 044097 391 TARALPFKQ-EVIPGASPSAL 410 (439)
Q Consensus 391 ~e~q~~~a~-~~~g~~~P~~~ 410 (439)
+|.|..+++ . .|+ .|...
T Consensus 325 ~e~q~~~~~~~-~g~-~P~~~ 343 (415)
T 3oo8_A 325 AEAEAAFLKTD-HWD-VGLAN 343 (415)
T ss_dssp HHHHHHHHTTC-SSC-EECST
T ss_pred HHHHHHHHhcc-CCC-CCCCC
Confidence 999999986 4 444 55543
No 38
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=99.85 E-value=1.1e-20 Score=195.47 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=157.4
Q ss_pred ceeEEEEeC-CCC----ccHHHHHHHHhhc-CCeEEEEEeee-----------cccccccceEe-c-CchhHHHHHHCCC
Q 044097 135 TVPLRVVSL-QNS----VPQSWVKDFMRSQ-GKRLKFQMNLC-----------ASIDGIVNNLS-T-PFNKLSFAIKKRF 195 (439)
Q Consensus 135 ~~~L~v~~w-~~~----~~~~li~~Fek~~-GI~V~~~~~~~-----------~s~~~~~~dv~-~-~~~~~~~~i~~Gl 195 (439)
.++|+++.| .+. ..++++++|++++ ||+|+++.... +++ + .+||+ . ...++..++++|+
T Consensus 62 ~vtit~w~~~~~~~~~~~~~~~i~~F~~~~p~I~V~~~~~~~~~~~~kl~~~~asg-~-~PDv~~~~~~~~~~~~~~~g~ 139 (456)
T 4g68_A 62 KITLTFWNLFTGEPAKTKVKEIIDQWNKENPNVQIVESVTENDAYKTKIKAAIAAN-E-APDIFQTWAGGFSQPFVEAGK 139 (456)
T ss_dssp -CEEEEEECCCSTTHHHHHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHTT-C-CCSEEEEETTTTTHHHHHTTC
T ss_pred CEEEEEeeCCCCchHHHHHHHHHHHHHHHCcCeEEEEEECCcHHHHHHHHHHHhCC-C-CCeEEEEcCchHHHHHHHcCC
Confidence 457888764 332 2368999999998 99999873211 122 2 34554 3 3456778999999
Q ss_pred cccccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc-
Q 044097 196 IEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA- 272 (439)
Q Consensus 196 l~pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk- 272 (439)
|.||++..... ...+..+..++ ...+ +|++||+|+..++.+|+|||++|+++|+++|+||+||.+. +++
T Consensus 140 l~~L~~~~~~~---~~~~~~~~~~~---~~~~--dGk~Y~~P~~~~~~~l~Ynkdl~~~aG~~~P~Twde~~~~~~~l~~ 211 (456)
T 4g68_A 140 VLQLDSYLNDG---TKDQLLPGSFD---NVTY--NGKIYGIPFDQQASVLYINKELFDKYNVKVPTTFSELIDAIKTFKS 211 (456)
T ss_dssp BCCCGGGSSSS---GGGGBCTTTTG---GGEE--TTEECCEEEEEEEEEEEEEHHHHHHHTCCCCCBHHHHHHHHHHHHH
T ss_pred cccchhhhccc---hHhhhCHHHHH---hcEE--CCEEEEEEeeccceeeeccHHHHhhcCCcccCCHHHHHHHHHHHHH
Confidence 99999752111 11222222222 1234 4999999999999999999999999999999999999875 343
Q ss_pred -Cc--eeec--cChhH--HH-----HhCCH---------------HHH---HHHHHHHhhh--h----cccCchHHHHHh
Q 044097 273 -GR--ISMV--NSPRE--VI-----VAGGK---------------IAV---QQNLALLANQ--V----RLFDSTHYLKAF 316 (439)
Q Consensus 273 -gk--I~~~--~~~~~--~~-----~~~G~---------------d~~---~e~L~~l~~~--v----~~~~~~~~~~~f 316 (439)
|. +++. +.... .+ ..+|. +.+ .+++.+|... + ...+.++..+.|
T Consensus 212 ~g~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~d~~~g~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f 291 (456)
T 4g68_A 212 KGVTPFALGEKDEWPGMWYYDMIALREGGVQLTRDALNGKASFDNQAFTDAAQKLQDMVNAGAFDSGFMGLTRDEATAEF 291 (456)
T ss_dssp TTCCSBCCCCTTSHHHHHHHHHHHHHHHCHHHHHHHHTTSSCSCCHHHHHHHHHHHHHHHTTCBCTTGGGCCHHHHHHHH
T ss_pred CCCceEEeccCCCcchHHHHHHHHHHhCCchhcccccCCccccCCHHHHHHHHHHHHHHHcCCCCCccccCChHHHHhhh
Confidence 32 3322 11111 11 11121 233 3444444321 1 112234567899
Q ss_pred hcCCeEEEEEccccHHHHHHcC-----CCeeEE-ccC--C--Cc---ee--eeeEEEEecCCCCcccccCCCCCCCHHHH
Q 044097 317 GIGDVWVAVGWSSDVLPAVKRM-----SNVAVV-VPK--S--GA---SL--WADLWAIPAASRLETKQIGGQVRGPSPLI 381 (439)
Q Consensus 317 ~~Ge~~~~i~ws~~~~~~~~~~-----~~v~~~-vP~--e--G~---~~--~~~~~aI~k~a~~~e~~~~~~~~~~~~aA 381 (439)
.+|+++|.+.++..+..+.... .+++++ +|. . |. .. +...++|+++++|++ +|
T Consensus 292 ~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~~~~~i~~~sk~~e------------~A 359 (456)
T 4g68_A 292 NQGKAAMYFGGNFDAAAFVSDPSSLVKGKIEAVRFPTIEGGKGDPTEYIGGTVGALMVSANSKYKD------------EA 359 (456)
T ss_dssp HTTCCSEEEEEGGGHHHHHTSTTCSCTTTEEEECCCBCTTCCSCTTCEEEEEEEEEEEBTTCSCHH------------HH
T ss_pred ccCCEEEEEeCchHHHHHHhccccccCCceEEEecCccCCCCCCcceeecccceeeeecCCCcCHH------------HH
Confidence 9999999998877766655432 256654 663 1 11 12 235789999999999 99
Q ss_pred HHHHHHHhcHHhhHHHHhh
Q 044097 382 HQWIEFCLQTARALPFKQE 400 (439)
Q Consensus 382 ~~FI~fllS~e~q~~~a~~ 400 (439)
++||+||+|+|.|..+...
T Consensus 360 ~~fl~~l~s~e~~~~~~~~ 378 (456)
T 4g68_A 360 VRAAKYLAKQLSDMDYLIA 378 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCHHHHHHHHHh
Confidence 9999999999999999854
No 39
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=99.85 E-value=1.5e-20 Score=194.38 Aligned_cols=247 Identities=17% Similarity=0.168 Sum_probs=167.5
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+||.+++. ..++++++|++++||+|+++.. ..++++ .+|.+.....++..++++|+|.||++.
T Consensus 4 ~~tltvw~~~~~~~~~~~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~-~pDv~~~~~~~~~~~~~~G~l~~L~~~ 82 (449)
T 3iot_A 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPD 82 (449)
T ss_dssp SSSEEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHGGGTC-SCSEEEEETTTHHHHHHTTCBCCCCCC
T ss_pred cceEEEEeCCCCchHHHHHHHHHHhhccCCEEEEEecHHHHHHHHHHhhCCC-CCCEEEeCchhHHHHHhCCCcccCCcc
Confidence 357888865543 3468999999999999999721 112222 244444567789999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~ 278 (439)
. +..+++.+. +++. ..+ +|++||+|+..++.+|+|||++|++ +|+||+||++. +++ |+..+.
T Consensus 83 ~--~~~~~~~~~---~~~~---~~~--dGk~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 148 (449)
T 3iot_A 83 K--AFQDKLYPF---TWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (449)
T ss_dssp H--HHHTTBCHH---HHTT---SBS--SSCBCCEEEEEEECEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCBSCC
T ss_pred h--hhhhccCHH---HHHh---ceE--CCEEEEeccccceeEEEEehHHhcc----CCCCHHHHHHHHHHHHhCCCceEE
Confidence 2 333444433 2321 234 4999999999999999999999995 89999999985 333 443321
Q ss_pred ---cChhHH--HH--hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 ---NSPREV--IV--AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ---~~~~~~--~~--~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
.+.... +. .+| .+ .+++.+.++... +. ..+.++....|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~g 228 (449)
T 3iot_A 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (449)
T ss_dssp CCCSCHHHHHHHHTTTTCBSSEECSSCEETTCCBSSSHHHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHTTCBSEEEEC
T ss_pred eecCchHHHHHHHHhhCCeeeccccccccccccccCCHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHcCCeeEEecc
Confidence 111111 11 111 02 234455555432 11 1223456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++||+ ||+|+|.|..+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~~ 296 (449)
T 3iot_A 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (449)
T ss_dssp GGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred ccchhhHHhcCCceeEEeCCCCCCCCCCceeceeEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHhh
Confidence 88877776666678876 574 22 245667899999999999 9999995 99999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 297 -~~~~~p~~ 304 (449)
T 3iot_A 297 -KPLGAVAL 304 (449)
T ss_dssp -SCCSEESB
T ss_pred -cccCCcch
Confidence 45555654
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=99.85 E-value=3e-20 Score=194.08 Aligned_cols=247 Identities=17% Similarity=0.166 Sum_probs=167.3
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|++|.+++. ..++++++|++++||+|+++.. ..+++. .+|.+..+..++..+++.|+|.||++.
T Consensus 18 ~~tltvW~~~~~~~~~~~~~i~~Fe~~~gI~V~~~~~~~~~~kl~~~~asg~-~PDv~~~~~~~~~~~~~~G~l~~L~~~ 96 (471)
T 3mq9_A 18 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPD 96 (471)
T ss_dssp CCSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTC-SCSEEEEETTHHHHHHHTTCBCCCCCC
T ss_pred CceEEEEeCCCCccHHHHHHHHHHhhCcCCEEEEEechHHHHHHHHHHhCCC-CCeEEEECChhHHHHHHCCceecCCcc
Confidence 457888765543 2468999999999999999721 011222 244445567789999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~ 278 (439)
. +..+++.+. .++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. ++ +|+..+.
T Consensus 97 ~--~~~~~~~~~---~~~~---~~~d--Gk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 162 (471)
T 3mq9_A 97 K--AFQDKLYPF---TWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 162 (471)
T ss_dssp H--HHHTTBCHH---HHGG---GEET--TEECEEEEEEEECEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred h--HHHhhcCHH---HHHh---hEEC--CEEEEEeeeccceEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEE
Confidence 2 223334332 2321 2344 999999999999999999999995 89999999985 34 3444332
Q ss_pred ---cChhHH--H-H-hCC------------------HH---HHHHHHHHHhhh--h-cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 ---NSPREV--I-V-AGG------------------KI---AVQQNLALLANQ--V-RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ---~~~~~~--~-~-~~G------------------~d---~~~e~L~~l~~~--v-~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
...... + . .+| .+ .+.+++.++... + ...+.++..+.|.+|+++|.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 242 (471)
T 3mq9_A 163 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 242 (471)
T ss_dssp CCCSSHHHHHHHHGGGTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEEC
T ss_pred ecCCchHHHHHHHHhcCCeeeccCCCccccCCcCcCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHcCCeEEEEec
Confidence 111111 1 1 111 02 244455555432 1 11223456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
++.+..+.+.+.++++. +|. .| ...++.+++|+++++|++ +|++||+ |++|+|.|..+.+.
T Consensus 243 ~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~~ 310 (471)
T 3mq9_A 243 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 310 (471)
T ss_dssp GGGHHHHHTTTCCEEEECCCBBTTBCCCCEEEEEEEEEBSSCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred chhhHHHHhcCCCEEEEECCCCCCCCCcceecceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHhc
Confidence 88877766656677775 574 12 245667899999999999 9999996 99999999999864
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 311 -~~~~~p~~ 318 (471)
T 3mq9_A 311 -KPLGAVAL 318 (471)
T ss_dssp -SCCCSBSB
T ss_pred -CCCCCCch
Confidence 45556654
No 41
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.84 E-value=1.7e-20 Score=205.93 Aligned_cols=238 Identities=17% Similarity=0.168 Sum_probs=160.8
Q ss_pred eeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCcccccccc
Q 044097 136 VPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 136 ~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~ 203 (439)
++|+||..++. ..++++++|++++||+|+++.. ..++++ .+|.+..+..++..++++|+|+||+++.
T Consensus 6 G~LtvW~~~d~~~~~l~eii~~Fek~~gIkV~v~~~~~~~~kl~t~~asG~-~PDV~~~~~~~~~~~a~~G~L~~L~~~~ 84 (715)
T 4h1g_A 6 GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPDK 84 (715)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHHHHCCEEEEECCTTHHHHHHHHHTTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCCH
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhcCcCCEEEEEeCCCHHHHHHHHHhCCC-CCeEEEEChHHHHHHHHCCCEeeCCcCh
Confidence 47888765443 2367999999999999998721 012222 2444445678999999999999998752
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec-
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV- 278 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~- 278 (439)
...+++.+ ..++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. +++ |+..+.
T Consensus 85 --~~~d~~~~---~~~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdlf~e----~P~TWdEl~~~akklk~~g~~~~~~ 150 (715)
T 4h1g_A 85 --AFQDKLYP---FTWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMF 150 (715)
T ss_dssp --HHHTTBCH---HHHHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECC
T ss_pred --hhhhhcCH---HHHHh---cEEC--CEEEEEEEecceEEEEEEhHHhcC----CCCCHHHHHHHHHHHHhcCCCceec
Confidence 22233333 23322 2355 999999999999999999999997 79999999874 343 443322
Q ss_pred --cChhHH---H-HhCC--------H----------HH---HHHHHHHHhhhh--cc-cCchHHHHHhhcCCeEEEEEcc
Q 044097 279 --NSPREV---I-VAGG--------K----------IA---VQQNLALLANQV--RL-FDSTHYLKAFGIGDVWVAVGWS 328 (439)
Q Consensus 279 --~~~~~~---~-~~~G--------~----------d~---~~e~L~~l~~~v--~~-~~~~~~~~~f~~Ge~~~~i~ws 328 (439)
..+... + ..+| . +. +.+++.++.... .. .+.+.....|.+|+++|.+.|+
T Consensus 151 ~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~s~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g~ 230 (715)
T 4h1g_A 151 NLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGP 230 (715)
T ss_dssp CCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECG
T ss_pred cCCchHHHHHHHHhhCCceecccCCcccccccccCCHHHHHHHHHHHHHHHcCCCCcchhhhhHHHHhhcCceEEEEecH
Confidence 111111 1 1111 0 23 344455544321 11 1223456789999999999988
Q ss_pred ccHHHHHHcCCCeeEE-ccC-C----CceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 329 SDVLPAVKRMSNVAVV-VPK-S----GASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 329 ~~~~~~~~~~~~v~~~-vP~-e----G~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+.+..+.+.+.++++. +|. . +...++.+++|+++++|++ +|++||+ |++++|.|..+.+.
T Consensus 231 w~~~~~~~~~~~~gva~lP~~~g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~~l~s~e~q~~~~~~ 297 (715)
T 4h1g_A 231 WAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 297 (715)
T ss_dssp GGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEcCCCCCCCCcceeeeEEEEEECCCCcHH------------HHHHHHHHHhCCHHHHHHHHHc
Confidence 8777776666777764 663 1 2345678899999999999 9999997 68899999999875
No 42
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=99.84 E-value=4.6e-20 Score=192.05 Aligned_cols=247 Identities=17% Similarity=0.155 Sum_probs=168.0
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+||.+++. ..++++++|++++||+|+++.. ..++++ .+|.+.....++..++++|+|+||++.
T Consensus 4 ~~~l~vw~~~~~~~~~~~~~~~~f~~~~~i~V~~~~~~~~~~kl~~~~~~g~-~pDv~~~~~~~~~~~~~~g~l~~L~~~ 82 (507)
T 3oai_A 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPD 82 (507)
T ss_dssp SSSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred cceEEEEECCCcchHHHHHHHHHHhhccCcEEEEEeCCcHHHHHHHHhhCCC-CCCEEEEcchhHHHHHHCCCcccCCch
Confidence 357888855443 3468999999999999999721 011222 244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+++|||++|++ +|+||+||++. ++ +|+..+.
T Consensus 83 ~--~~~~~~~~~~---~~~---~~~~--G~~y~~P~~~~~~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~ 148 (507)
T 3oai_A 83 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (507)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEEC
T ss_pred h--hhHhhccHHH---Hhh---eEEC--CEEEEeeccccceEEEEehHhhcc----CcCCHHHHHHHHHHHHhCCCceEE
Confidence 2 2233444332 221 2344 999999999999999999999995 89999999986 33 3544332
Q ss_pred ---cChhHH---HH-hCC------------------HH---HHHHHHHHHhhh--h-cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 ---NSPREV---IV-AGG------------------KI---AVQQNLALLANQ--V-RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ---~~~~~~---~~-~~G------------------~d---~~~e~L~~l~~~--v-~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
...... +. .+| .+ .+.+.+.++... + ...+.++..+.|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~ 228 (507)
T 3oai_A 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (507)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEEC
T ss_pred eecCchHHHHHHHHhcCCeeecccCCCcCccccccCCHHHHHHHHHHHHHHHcCCCCCCcchhHHHHHHhcCCeEEEecc
Confidence 111111 11 111 02 344555555432 1 11223456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-C----CceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-S----GASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-e----G~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.++++. +|. . ....++..++|+++++|++ +|++||+ |++|+|.|..+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~~ 296 (507)
T 3oai_A 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (507)
T ss_dssp GGGHHHHHHHCCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred ccccChhhhcCCceeEEeCCCCCCCCCCccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhhc
Confidence 88877776666678876 674 1 1245667899999999999 9999997 99999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 297 -~~~~~p~~ 304 (507)
T 3oai_A 297 -KPLGAVAL 304 (507)
T ss_dssp -SCCSEESB
T ss_pred -cCCCCCch
Confidence 45556654
No 43
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=99.84 E-value=3.2e-20 Score=195.16 Aligned_cols=239 Identities=18% Similarity=0.162 Sum_probs=160.9
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+||.+++. ..++++++|++++||+|+++.. ..++++ .+|.+..+..++..++++|+|+||++.
T Consensus 8 eg~LtvW~~~~~~~~~l~ei~~~Fek~~gIkV~~~~~~~~~~kl~t~~asG~-~PDV~~~~~~~~~~~~~~G~L~~L~d~ 86 (487)
T 4exk_A 8 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPA 86 (487)
T ss_dssp TTEEEEECCTTSCHHHHHHHHHHHHHHHCCEEEEECCTTHHHHHHHHTTTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CCEEEEEecCCchHHHHHHHHHHhhhccCcEEEEEeCCCHHHHHHHHHhCCC-CCeEEEECcHHHHHHHHCCCcccCCcc
Confidence 347788765543 2367999999999999998721 112222 244444567899999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cce--e
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRI--S 276 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI--~ 276 (439)
. ...+++.+. .++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||.+. +++ |+. .
T Consensus 87 ~--~~~d~~~~~---~~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdlf~e----~P~Twdel~~~akklk~~g~~~~~ 152 (487)
T 4exk_A 87 A--AFQDKLYPF---TWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 152 (487)
T ss_dssp H--HHHTTBCHH---HHHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEEC
T ss_pred h--hhhhhcCHH---HHHh---ceEC--CEEEecCeEeccEEEEEEeecccc----CCchHHHHHHHHHHHHhcCCCccc
Confidence 2 222333332 2322 2355 999999999999999999999997 79999999874 343 332 2
Q ss_pred ec-cChhHH---HH-hCC--------H----------HH---HHHHHHHHhhhhc---ccCchHHHHHhhcCCeEEEEEc
Q 044097 277 MV-NSPREV---IV-AGG--------K----------IA---VQQNLALLANQVR---LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 277 ~~-~~~~~~---~~-~~G--------~----------d~---~~e~L~~l~~~v~---~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
+. ...... +. .+| . .. +.+++.++..... ..+.....+.|.+|+++|.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~gg~~~~~~~g~~d~~~~~~~~~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~F~~Gk~Am~~~g 232 (487)
T 4exk_A 153 FNLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 232 (487)
T ss_dssp CCTTSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEEC
T ss_pred cCCCcccchhHHHHhhccceeeccCCCccccccccCCHHHHHHHHHHHHHHHcCCCCcccchhhHHHhhhcCCEEEEEeC
Confidence 21 111111 11 111 0 22 3444555543311 1122345678999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.++++. +|. .| ...++.+++|+++++|++ +|++||+ |++++|.|..+.+.
T Consensus 233 ~w~~~~~~~~~~~~gv~plP~~~g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~~l~s~e~q~~~~~~ 300 (487)
T 4exk_A 233 PWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 300 (487)
T ss_dssp GGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeeEEEeccCCCCCCcceecceEEEEECCCCCHH------------HHHHHHHHHhCCHHHHHHHHHc
Confidence 88877777767777765 553 22 345677899999999999 9999997 78899999999865
No 44
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.84 E-value=4.6e-20 Score=188.20 Aligned_cols=246 Identities=17% Similarity=0.145 Sum_probs=166.2
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEee---------ecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNL---------CASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~---------~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+++.+.+. ..++++++|++.+||+|+++... .+++ ..+|.+..+..++..++++|+|+||++.
T Consensus 4 ~~tl~~w~~~~~~~~~~~~~~~~F~~~~~i~V~~~~~~~~~~kl~~~~~~g-~~pDv~~~~~~~~~~~~~~g~l~~L~~~ 82 (421)
T 1mh3_A 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 82 (421)
T ss_dssp TTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTT-CSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred ceeEEEEeCCCcchHHHHHHHHHHhhccCceEEEEeCchHHHHHHHHhhCC-CCCCEEEeChHhHHHHHhCCCeecCCcc
Confidence 457888876332 34689999996579999997210 1122 2244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC--cccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--PELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lk--gkI~~~ 278 (439)
. .+.+++.+. +++. ..+| |++||+|+..++.+|+||+++|++ +|+||+||++ .+++ |++++.
T Consensus 83 ~--~~~~~~~~~---~~~~---~~~d--G~~y~vP~~~~~~~l~Ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~ 148 (421)
T 1mh3_A 83 K--AFQDKLYPF---TWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (421)
T ss_dssp H--HHHTTBCHH---HHHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred h--hhHhhccHH---hHhh---EEEC--CeEEEeeeeccceEEEEehhhccC----CCCCHHHHHHHHHHHhcCCCCcee
Confidence 1 223444433 2221 2344 999999999999999999999997 7999999998 3555 555543
Q ss_pred cCh--hH----HHH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 NSP--RE----VIV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~~~--~~----~~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
... .. ++. .+| .+ .+.+.+.++... +. ..+.++..+.|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g 228 (421)
T 1mh3_A 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (421)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEEC
T ss_pred ecCCchHHHHHHHHhcCCeeeccccCCCCccCccCCCHHHHHHHHHHHHHHhcCCCCCCCCchhHHHHHHCCCeeEEEeC
Confidence 211 11 111 111 01 234555555432 11 1222456688999999999988
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++|| +|++|+|.|..+++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fi~~~l~s~e~~~~~~~~ 296 (421)
T 1mh3_A 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (421)
T ss_dssp GGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred chhHHHHhhcCCCeeEEeCCCCCCCCCCccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh
Confidence 77766555556678876 775 22 234567899999999999 999999 999999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.|+ .|..
T Consensus 297 -~g~-~P~~ 303 (421)
T 1mh3_A 297 -KPL-GAVA 303 (421)
T ss_dssp -SCC-CEES
T ss_pred -cCC-CCch
Confidence 344 5654
No 45
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=99.84 E-value=6.1e-20 Score=193.98 Aligned_cols=247 Identities=18% Similarity=0.164 Sum_probs=168.2
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
+++|+++.+++. ..++++++|++++||+|+++.. ..++++ .+|.+..+..++..++++|+|+||++.
T Consensus 5 ~~tltvw~~~~~~~~~~~~~~~~Fe~~~gI~V~~~~~~~~~~kl~~~~~sg~-~pDv~~~~~~~~~~~~~~G~l~~L~~~ 83 (523)
T 3py7_A 5 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPA 83 (523)
T ss_dssp TTEEEEECCTTSCHHHHHHHHHHHHHHHSCEEEEECCTTHHHHHHHHHHTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred ceEEEEEeCCCcchHHHHHHHHHHhhccCCEEEEEechHHHHHHHHHhhCCC-CCcEEEECcHhHHHHHHCCCeecCCcc
Confidence 457888865543 2468999999999999999721 011222 244445567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+++|||++|++ +|+||+||++. +++ |+..+.
T Consensus 84 ~--~~~~~~~~~~---~~~---~~~d--Gk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 149 (523)
T 3py7_A 84 A--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 149 (523)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred h--hhhhhcCHHH---Hhh---eEEC--CEEEEEeeeccceEEEEEhHHhhc----CCCCHHHHHHHHHHHHhCCCceeE
Confidence 2 2334444432 221 2344 999999999999999999999995 89999999986 333 443332
Q ss_pred --c-ChhHH---HH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 --N-SPREV---IV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 --~-~~~~~---~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
. +.... +. .+| .+ .+.+.+.++... +. ..+.++..+.|.+|+++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g 229 (523)
T 3py7_A 150 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 229 (523)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEEC
T ss_pred eecCchHHHHHHHHhhCcceeccccccccccccccCCHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHhcCCEEEEecC
Confidence 1 11111 11 111 02 344555555443 11 1222456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++||+ |++|+|.|..+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------------aA~~fi~~~l~s~e~q~~~~~~ 297 (523)
T 3py7_A 230 PWAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 297 (523)
T ss_dssp GGGHHHHHHSSCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred CcchhHHHhcCCceeEEECCCCCCCCCCccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhhc
Confidence 88877776666677775 574 22 245667899999999999 9999997 99999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 298 -~~~~~p~~ 305 (523)
T 3py7_A 298 -KPLGAVAL 305 (523)
T ss_dssp -SCCCEESB
T ss_pred -CCCCCCcc
Confidence 45545654
No 46
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=99.84 E-value=3.4e-20 Score=185.42 Aligned_cols=237 Identities=11% Similarity=0.148 Sum_probs=154.5
Q ss_pred eEEEEeCCCC-----ccHHHHHHHHhhc-CCeEEEEEeeecc----cccccceEecCchhHHHHHHCCCcccccccccch
Q 044097 137 PLRVVSLQNS-----VPQSWVKDFMRSQ-GKRLKFQMNLCAS----IDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQD 206 (439)
Q Consensus 137 ~L~v~~w~~~-----~~~~li~~Fek~~-GI~V~~~~~~~~s----~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~ 206 (439)
+|+|..|+.. +.++++++|++++ ||+|+++. ++. ....+|.+.....++..++++|+|+||+...
T Consensus 2 tl~v~~w~~~~~~~~~~~~~~~~F~~~~p~i~V~~~~--~~~~~~~~~~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--- 76 (371)
T 3thi_A 2 TLKVAIYPYVPDPARFQAAVLDQWQRQEPGVKLEFTD--WDSYSADPPDDLDVFVLDSIFLSHFVDAGYLLPFGSQD--- 76 (371)
T ss_dssp EEEEECCSCSSCHHHHHHHHHHHHHHHCTTSEEEECC--CCTTTCCCCTTCCEEEEEGGGHHHHHHTTCEECBCGGG---
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeeEEEEe--hhhhhccCCCCCCEEEECchhHHHHHhCCCcccCchhh---
Confidence 4566666532 3367999999998 99999872 221 1223444456678899999999999999752
Q ss_pred hhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cccCc-------eee
Q 044097 207 WFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELAGR-------ISM 277 (439)
Q Consensus 207 ~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lkgk-------I~~ 277 (439)
+++.++..+..++. ..+| |++||+|+..++.+|+|||+++.. ++|+||+||++. +++.+ .++
T Consensus 77 -~~~~~~~~~~~~~~---~~~~--G~~ygvP~~~~~~~l~YNkd~~g~---~~P~Twdel~~~~~~l~~~~~~~~~~~g~ 147 (371)
T 3thi_A 77 -IDQAEDVLPFALQG---AKRN--GEVYGLPQILCTNLLFYRKGDLKI---GQVDNIYELYKKIGTSHSEQIPPPQNKGL 147 (371)
T ss_dssp -CTTGGGBCHHHHHH---TEET--TEECCEEEEEECEEEEEETTCHHH---HTCCBHHHHHHHHCCCCCCCSSCCEEEEE
T ss_pred -ccCccccChHHHhh---eEEC--CEEEEecccCceeEEEEeCccccC---CCCCcHHHHHHHHHhhcccCCCCCCcCce
Confidence 12333434433432 2355 999999999999999999997753 589999999874 44421 121
Q ss_pred --ccC-h---hHHH-----HhCC------------H--HHHH---HHHHHHhhh-hccc--Cch---HHHHHhhcCCeEE
Q 044097 278 --VNS-P---REVI-----VAGG------------K--IAVQ---QNLALLANQ-VRLF--DST---HYLKAFGIGDVWV 323 (439)
Q Consensus 278 --~~~-~---~~~~-----~~~G------------~--d~~~---e~L~~l~~~-v~~~--~~~---~~~~~f~~Ge~~~ 323 (439)
... . ...+ ..+| . +.+. +.+.++... ...+ ... ...+.|.+|+++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~G~~am 227 (371)
T 3thi_A 148 LINMAGGTTKASMYLEALIDVTGQYTEYDLLPPLDPLNDKVIRGLRLLINMAGEKPSQYVPEDGDAYVRASWFAQGSGRA 227 (371)
T ss_dssp EECCCSHHHHHHHHHHHHHHHHTCCCCCSSCCCSSSCCHHHHHHHHHHHHHHCHHHHHCCCTTCCTTHHHHHHHHTBEEE
T ss_pred eeecCCCcchHHHHHHHHHhcCCcccccccccccccCCHHHHHHHHHHHHHhccccCcccccCCchhHHHHHHhCCeeeE
Confidence 111 1 0111 1112 1 2333 444444321 1123 111 2567899999999
Q ss_pred EEEccccHHHHHHcCCCeeEE-ccC----CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHH
Q 044097 324 AVGWSSDVLPAVKRMSNVAVV-VPK----SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFK 398 (439)
Q Consensus 324 ~i~ws~~~~~~~~~~~~v~~~-vP~----eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a 398 (439)
.+.|+..+..+.+...++++. +|. ++...++++++|+++++|++ +|++||+||+|+|.|..+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~l~s~e~~~~~~ 295 (371)
T 3thi_A 228 FIGYSESMMRMGDYAEQVRFKPISSSAGQDIPLFYSDVVSVNSKTAHPE------------LAKKLANVMASADTVEQAL 295 (371)
T ss_dssp EEEETTHHHHHGGGGGTEEEECCBSCSSCCCCEEEEEEEEEETTCSCHH------------HHHHHHHHHHSHHHHHHHH
T ss_pred EecchhhhhHhhhcccceEEEeCCCCCCCCCceeeeeEEEEcCCCCCHH------------HHHHHHHHHcCcHHHHHhh
Confidence 999887665544333467765 664 23456778999999999999 9999999999999955554
Q ss_pred h
Q 044097 399 Q 399 (439)
Q Consensus 399 ~ 399 (439)
.
T Consensus 296 ~ 296 (371)
T 3thi_A 296 R 296 (371)
T ss_dssp S
T ss_pred C
Confidence 3
No 47
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=99.84 E-value=6.2e-20 Score=199.54 Aligned_cols=247 Identities=17% Similarity=0.148 Sum_probs=171.0
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|++|.+.+. ..++++++|++++||+|+++.. ..++++ .+|.+..+..++..++++|+|+||++.
T Consensus 40 ~~tLtvw~~~~~~~~~~~~li~~Fek~pgIkV~~~~~~d~~~kL~~~lasG~-~PDV~~~~~~~~~~~~~~G~L~pLdd~ 118 (653)
T 3osr_A 40 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPD 118 (653)
T ss_dssp TTEEEEECCTTSCHHHHHHHHHHHHHHHSCEEEEECCTTHHHHHHHHHHTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CCEEEEEecCCchHHHHHHHHHHHHhhhCCEEEEEECCcHHHHHHHHHhCCC-CCEEEEECcHHHHHHHHCCCEEECCCc
Confidence 447888865543 2367999999999999999721 011122 244444567789999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. +++ |+..+.
T Consensus 119 ~--~~~~~~~~~~---~~~---~~~d--Gk~YglP~~~~~~~l~YNkdlfee----~P~TWdEL~~~akklk~~G~~~~~ 184 (653)
T 3osr_A 119 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 184 (653)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEEC
T ss_pred H--HHHhhCCHHH---HHh---eEEC--CEEEEEEecCceeEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCceeE
Confidence 2 3334444432 221 2344 999999999999999999999995 89999999985 443 444332
Q ss_pred c---ChhHH---H-HhCC------------------HH---HHHHHHHHHhhhh---cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 N---SPREV---I-VAGG------------------KI---AVQQNLALLANQV---RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~---~~~~~---~-~~~G------------------~d---~~~e~L~~l~~~v---~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
- +.... + ..+| .+ ++.+.+.++.... ...+.++..+.|.+|+++|.+.|
T Consensus 185 ~~~~~~~~~~~~l~~~Gg~~~~~~~~~~d~~~~~~d~~~~~~ale~l~~L~~~g~~~~~~~~~~~~~~f~sGk~am~~~g 264 (653)
T 3osr_A 185 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 264 (653)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEEC
T ss_pred eccCchHHHHHHHHHcCCeeeeccCcccccCccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHCCCEEEEEeC
Confidence 1 11111 1 1111 02 3445555554431 11223456789999999999999
Q ss_pred cccHHHHHHcCCCeeEE-ccC-----CCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-----SGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-----eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
++.+..+.+.+.+++++ +|. .+...++.+++|+++++|++ +|++||+ ||+|+|.|..+++.
T Consensus 265 sw~~~~l~~~~~~~gv~~~P~~~g~~~~~~~g~~~~aI~k~Skn~e------------aA~~FI~nfl~S~E~q~~~a~~ 332 (653)
T 3osr_A 265 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 332 (653)
T ss_dssp GGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred hhHHHHHhhcCCCEEEEEcCCCCCCCcceeeccEEEEEECCCCCHH------------HHHHHHHHHccCHHHHHHHHHh
Confidence 88887777666788886 774 23456678999999999999 9999997 99999999999875
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++.+|..
T Consensus 333 -~g~~~P~~ 340 (653)
T 3osr_A 333 -KPLGAVAL 340 (653)
T ss_dssp -SCCCEESB
T ss_pred -cCCCCCCc
Confidence 56666765
No 48
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=99.84 E-value=7.4e-20 Score=190.77 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=166.1
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEee---------ecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNL---------CASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~---------~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+++.|.+. ..++++++|++.+||+|+++... .+++ ..+|.+..+..++..++++|+|+||++.
T Consensus 5 ~~tlt~w~~~~~~~~~~~~~i~~F~~~pgI~V~~~~~~~~~~kl~~~~asg-~~PDV~~~~~~~~~~~~~~G~l~~L~~~ 83 (463)
T 2xz3_A 5 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 83 (463)
T ss_dssp TTEEEEECCTTSCHHHHHHHHHHHHHHHCCEEEEECCTTHHHHHHHHHHTT-CSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHhccCCeEEEEecCchHHHHHHHHhCC-CCCcEEEECchhHHHHHHCCceecCCcc
Confidence 357888876332 34689999996679999997210 1122 2244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC--cccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--PELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lk--gkI~~~ 278 (439)
. ++.+++.+.. ++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++ .+++ |++++.
T Consensus 84 ~--~~~~~~~~~~---~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdlf~~----~P~Twdel~~~a~kl~~~G~~g~~ 149 (463)
T 2xz3_A 84 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 149 (463)
T ss_dssp H--HHHHTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHHTTCEEEC
T ss_pred h--hhhhhCCHHH---HHh---eEEC--CEEEEEeeeccceEEEEEhHhhhC----CCCCHHHHHHHHHHHHhCCcceeE
Confidence 1 2233443332 221 2344 999999999999999999999997 7999999998 3565 666553
Q ss_pred cCh---hH---HHH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 NSP---RE---VIV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~~~---~~---~~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
... .. ++. .+| .+ .+.+++.++... +. ....++..+.|.+|+++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 229 (463)
T 2xz3_A 150 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 229 (463)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEEC
T ss_pred ecCCccHHHHHHHHHcCCcEeccccccccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCcchHHHHHHcCCeeEEecC
Confidence 221 11 111 111 01 244555555432 11 1122456689999999999987
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.++++. +|. +| ...++.+++|+++++|++ +|++|| +|++|+|.|..+++.
T Consensus 230 ~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~~ 297 (463)
T 2xz3_A 230 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 297 (463)
T ss_dssp GGGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred ccchhHHhhcCCCEEEEeCCCCCCCCCcccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh
Confidence 77665555555678876 775 33 234567899999999999 999999 999999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.|+ .|..
T Consensus 298 -~g~-~P~~ 304 (463)
T 2xz3_A 298 -KPL-GAVA 304 (463)
T ss_dssp -SCC-CEES
T ss_pred -cCC-CCCc
Confidence 444 5654
No 49
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=99.84 E-value=8.6e-20 Score=190.43 Aligned_cols=246 Identities=17% Similarity=0.140 Sum_probs=165.9
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEee---------ecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNL---------CASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~---------~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+++.+.+. ..++++++|++.+||+|+++... .+++ ..+|.+..+..++..++++|+|+||++.
T Consensus 4 ~~tlt~w~~~~~~~~~~~~~~~~F~~~p~i~V~~~~~~~~~~kl~~~~~sg-~~pDv~~~~~~~~~~~~~~g~l~~L~~~ 82 (487)
T 1hsj_A 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 82 (487)
T ss_dssp TTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTT-CSCSEEEEETTTHHHHHHHTCBCCBCCC
T ss_pred CceEEEEeCCCcchHHHHHHHHHHhhccCceEEEEecCchHHHHHHHHhCC-CCCcEEEeCcHhHHHHHHCCCeecCCcc
Confidence 357888876432 34689999996579999997210 1112 2244444566789999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC--cccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--PELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lk--gkI~~~ 278 (439)
.++.+++.+.. ++. ..+| |++||+|+..++.+++|||++|++ +|+||+||++ .+++ |++++.
T Consensus 83 --~~~~~~~~~~~---~~~---~~~d--Gk~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~ 148 (487)
T 1hsj_A 83 --KAFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (487)
T ss_dssp --HHHHTTBCHHH---HHH---TEET--TEECEEEEEEECCEEEEEGGGCSS----CCSBSTTSHHHHHHHTTTTCEEEC
T ss_pred --hhhhhhcCHHH---HHh---eeEC--CEEEEeeeecceeEEEEEhhhhcC----CCCCHHHHHHHHHHHhcCCcceee
Confidence 12233443332 221 2344 999999999999999999999997 7999999998 4565 665543
Q ss_pred cCh---hH---HHH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 NSP---RE---VIV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~~~---~~---~~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
... .. ++. .+| .+ .+.+++.++... +. ....++..+.|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g 228 (487)
T 1hsj_A 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (487)
T ss_dssp CCSSSHHHHHHHHHHTTCCSEEECSSSEEEEEETTSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTSSEEEEEEC
T ss_pred ecCCchHHHHHHHHhcCCeecccccccccccccCCCCHHHHHHHHHHHHHHHCCCCCCCCCchhHHHHHHcCCeeEEecC
Confidence 221 11 111 111 01 234555555432 11 1122456688999999999987
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++|| +|++|+|.|..+++.
T Consensus 229 ~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e------------aA~~fl~~~l~s~e~~~~~~~~ 296 (487)
T 1hsj_A 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (487)
T ss_dssp GGGHHHHHHTTCCEEEECCCBBTTBCCCCCBEEEEEEEBSSCSCHH------------HHHHHHHHTTTSHHHHHHHHHH
T ss_pred CcchhhHHhcCCCeeEecCCCCCCCCCCccccceEEEEECCCCCHH------------HHHHHHHHHHcCHHHHHHHHHh
Confidence 77666555555678876 775 33 234567899999999999 999999 999999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.|+ .|..
T Consensus 297 -~g~-~P~~ 303 (487)
T 1hsj_A 297 -KPL-GAVA 303 (487)
T ss_dssp -SCC-CEES
T ss_pred -cCC-CCCc
Confidence 344 5654
No 50
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=99.84 E-value=3e-21 Score=195.60 Aligned_cols=268 Identities=12% Similarity=0.040 Sum_probs=168.0
Q ss_pred ceeEEEEeCC-C-----CccHHHHHHHHhhc-CCeEEEEEee----------ecccccccceEe-cC-chhHHHHHHCCC
Q 044097 135 TVPLRVVSLQ-N-----SVPQSWVKDFMRSQ-GKRLKFQMNL----------CASIDGIVNNLS-TP-FNKLSFAIKKRF 195 (439)
Q Consensus 135 ~~~L~v~~w~-~-----~~~~~li~~Fek~~-GI~V~~~~~~----------~~s~~~~~~dv~-~~-~~~~~~~i~~Gl 195 (439)
.++|+++.|. + ...++++++|++++ ||+|+++... ..++ . .+||+ .. ..++..++++|+
T Consensus 7 ~~tl~~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~~sg-~-~pDv~~~~~~~~~~~~~~~g~ 84 (405)
T 3i3v_A 7 PDTLVVHTQLGTTAPGSPTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSRLAR-K-EADVVMVNLYDKTLAWTDVGA 84 (405)
T ss_dssp CCSEEEEESCSSSSTTHHHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHHHTT-C-CCSEEEECCSTTTTTTTTTTS
T ss_pred CcEEEEEeecCCCchhhHHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHHHCC-C-CCcEEEecCCcchHHHHhCCC
Confidence 4678888752 2 13368999999996 9999997321 0111 2 24554 44 677899999999
Q ss_pred cccccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCC-CCCCcccccCc--ccc
Q 044097 196 IEPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLA-PIEDWKDPWWP--ELA 272 (439)
Q Consensus 196 l~pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~-~P~TW~DL~dp--~lk 272 (439)
|+||++.. +.+.-.++..+..++. ..++ +|++||+|+..++.+|+|||++|+++|++ +|+||+||++. +++
T Consensus 85 l~~L~~~~--~~~~~~~~~~~~~~~~---~~~~-dG~~y~~P~~~~~~~l~Ynkdl~~~~G~~~~P~Twdel~~~~~~~~ 158 (405)
T 3i3v_A 85 TVDVKPYL--DDWGLRGRVLPAALAD---WTDD-EGRVRAFPYFATNWPVAYNRALLDRAGVDAIPTTGDQLIAAARKLR 158 (405)
T ss_dssp SCCCHHHH--HHTTCTTTBCHHHHHH---TBCT-TSCBCSBCCEEEEECEEEEHHHHHHHTCCSCCCBHHHHHHHHHHHH
T ss_pred ccccHHHH--hhcccccccCHHHHHh---hccC-CCcEEEEeccCceEEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHH
Confidence 99999742 2111112333333332 1232 48999999999999999999999999998 99999999875 333
Q ss_pred --Cceee--cc-ChhH--HH----H-hCCHH-----------------HHHHHHHHHhhh--h----cccCchHHHHHhh
Q 044097 273 --GRISM--VN-SPRE--VI----V-AGGKI-----------------AVQQNLALLANQ--V----RLFDSTHYLKAFG 317 (439)
Q Consensus 273 --gkI~~--~~-~~~~--~~----~-~~G~d-----------------~~~e~L~~l~~~--v----~~~~~~~~~~~f~ 317 (439)
|...+ .. .... .+ . .+|.+ .+.+.+.++... + ..++.++..+.|.
T Consensus 159 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~~~f~ 238 (405)
T 3i3v_A 159 AKGIAPVTVGGNDWTGQKLLAQIIQTFLSQDEARHVYSTGDFGVRGARLGIEYFAHLRDAGVFADKAQGLTSDSMTTQFN 238 (405)
T ss_dssp HTTCEEEECCTTSHHHHHHHHHHHGGGCCHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHTTCBCTTGGGCCHHHHHHHHH
T ss_pred HcCceeeEecCCCCchHHHHHHHHHHccChHHHHHhhcCCCCCCHHHHHHHHHHHHHHHCCCcCCCcccCCHHHHHHHHh
Confidence 43322 21 1111 11 1 12321 233444455431 1 1122345678999
Q ss_pred cCCeEEEEEccccHHHHHH-cCCCeeEE-cc--C-CCc--e--eee---eEEEEecCC-CCcccccCCCCCCCHHHHHHH
Q 044097 318 IGDVWVAVGWSSDVLPAVK-RMSNVAVV-VP--K-SGA--S--LWA---DLWAIPAAS-RLETKQIGGQVRGPSPLIHQW 384 (439)
Q Consensus 318 ~Ge~~~~i~ws~~~~~~~~-~~~~v~~~-vP--~-eG~--~--~~~---~~~aI~k~a-~~~e~~~~~~~~~~~~aA~~F 384 (439)
+|+++|.+.++..+..+.+ ...++++. +| . .+. . ..+ .+++|++++ +|++ +|++|
T Consensus 239 ~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~e------------~A~~f 306 (405)
T 3i3v_A 239 TEEAAVQSAMSSALAKVPEKVAGHTEVGGWPLADGAAHDGPTVIRAYTLIGFWISPNGVRKIE------------QVEKF 306 (405)
T ss_dssp TTSEEEEECCHHHHTTSCHHHHHTEEEECBCBCTTCSSSSCEEEEESCSSEEEECHHHHTTHH------------HHHHH
T ss_pred cCCeEEEEeCcEehhhhhhccccCCcEEeCCCCCCCCCCCCceEeccCceEEEEeCCchhhHH------------HHHHH
Confidence 9999999987665543321 12356654 34 2 222 2 233 679999999 9999 99999
Q ss_pred HHHHhcHHhhHHHHhhcCCCCCCCcccccccCCCHHHhcC
Q 044097 385 IEFCLQTARALPFKQEVIPGASPSALESTLVKLPEELLKG 424 (439)
Q Consensus 385 I~fllS~e~q~~~a~~~~g~~~P~~~~~~~~~lp~el~~~ 424 (439)
|+||+|+|.|..+++. .|+..|...+. .....+.++..
T Consensus 307 l~~l~s~e~q~~~~~~-~g~~~P~~~~~-~~~~~p~~~~~ 344 (405)
T 3i3v_A 307 LRFMYRPDVVARFVTE-SGRDMALRTDA-VSTGFPLVGAA 344 (405)
T ss_dssp HHHHTSHHHHHHHHHH-HCCEESBCCCC-CCTTSHHHHHH
T ss_pred HHHHhCHHHHHHHHHh-cCCcCCcccCc-cCCcCHHHHHH
Confidence 9999999999999875 35536766432 22334444433
No 51
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=99.83 E-value=1.4e-20 Score=191.13 Aligned_cols=252 Identities=10% Similarity=0.084 Sum_probs=162.3
Q ss_pred eEEEEe-CCC---CccHHHHHHHHhhc-CCeEEEEEeee---ccc---------ccccceEe-cC-chhH-HHHHHCCCc
Q 044097 137 PLRVVS-LQN---SVPQSWVKDFMRSQ-GKRLKFQMNLC---ASI---------DGIVNNLS-TP-FNKL-SFAIKKRFI 196 (439)
Q Consensus 137 ~L~v~~-w~~---~~~~~li~~Fek~~-GI~V~~~~~~~---~s~---------~~~~~dv~-~~-~~~~-~~~i~~Gll 196 (439)
+|++.. |++ ...++++++|++++ ||+|+++.... +.. .+..+||+ .. ..++ ..++++|+|
T Consensus 2 ~l~~~~~W~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~~~~~~~~~~~~~g~l 81 (400)
T 2b3f_A 2 KLEIFSWWAGDEGPALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLGGDPPDTFQVHAGMELIGTWVVANRM 81 (400)
T ss_dssp EEEEEESCCGGGCHHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHHHHHHTTCCCSEEEEETTHHHHHTTTTTTCB
T ss_pred eEEEEEecCCcHHHHHHHHHHHHHHHCCCceEEEEecCCCcchhHHHHHHHHHhCCCCCCEEeecCCchHHHHHHhCCCC
Confidence 455554 543 12367999999998 99999973221 100 11124554 44 5788 899999999
Q ss_pred ccccccccchhhcccchhH-HHhhhcCCCcccCCCCCEEEeeeec-ceEEEEEeCcccccCCCCCCCCcccccCc--ccc
Q 044097 197 EPIAEAEDQDWFKRLSHKW-KVYLRSNDAGEIDPRGKIWAAPYRW-GTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA 272 (439)
Q Consensus 197 ~pl~~~~~~~~~~~i~~~~-~~~l~~~~~~~~D~dGk~YgvP~~~-~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk 272 (439)
+||+... +. .++.+.+ +..++. ..+ +|++||+|+.. ++.+++|||++|+++|+++|+||+||++. +++
T Consensus 82 ~~L~~~~--~~-~~~~~~~~~~~~~~---~~~--dG~~y~vP~~~~~~~~l~Ynkdl~~~aGl~~P~Twdel~~~~~~l~ 153 (400)
T 2b3f_A 82 EDLSALF--RQ-EGWLQAFPKGLIDL---ISY--KGGIWSVPVNIHRSNVMWYLPAKLKGWGVNPPRTWDKFLATCQTLK 153 (400)
T ss_dssp CCCHHHH--HH-HTHHHHSCHHHHHH---HEE--TTEECCEECCBEESCEEEECHHHHHHTTCCCCSSHHHHHHHHHHHH
T ss_pred cCchHHH--Hh-CchhhhcCHhhhhh---eEE--CCEEEEEEEeeccCceEEEcHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 9999741 11 1222222 222221 234 49999999998 88999999999999999999999999985 443
Q ss_pred --Cc-eeeccC--hh--HHH-----HhCCH---------------H---HHHHHHHHHhhhhc-c---cCchHHHHHhhc
Q 044097 273 --GR-ISMVNS--PR--EVI-----VAGGK---------------I---AVQQNLALLANQVR-L---FDSTHYLKAFGI 318 (439)
Q Consensus 273 --gk-I~~~~~--~~--~~~-----~~~G~---------------d---~~~e~L~~l~~~v~-~---~~~~~~~~~f~~ 318 (439)
|. +.+.-. .. ..| ...|. + .+.+.+.++.+.+. . .+.++..+.|.+
T Consensus 154 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~ 233 (400)
T 2b3f_A 154 QKGLEAPLALGENWTQQHLWESVALAVLGPDDWNNLWNGKLKFTDPKAVRAWEVFGRVLDCANKDAAGLSWQQAVDRVVQ 233 (400)
T ss_dssp HTTCSCCEECCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCTTSHHHHHHHHHHHHHHTTBCTTGGGCCHHHHHHHHHH
T ss_pred HcCCcCCeEeCCcchHhHHHHHHHHhhcCHHHHHHHhcCccccCCHHHHHHHHHHHHHHHhcCCCccCCCHHHHHHHHhC
Confidence 54 443211 11 111 11121 1 23444455543221 1 122456788999
Q ss_pred CCeEEEEEccccHHHHHHc-----CCCeeEE-ccC-CCce-eeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 044097 319 GDVWVAVGWSSDVLPAVKR-----MSNVAVV-VPK-SGAS-LWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQ 390 (439)
Q Consensus 319 Ge~~~~i~ws~~~~~~~~~-----~~~v~~~-vP~-eG~~-~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS 390 (439)
|+++|.+.++.....+.+. +.++++. +|. +|.. .++.+++|+++++|++ +|++||+|++|
T Consensus 234 G~~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~i~~~s~~~e------------~A~~fi~~l~s 301 (400)
T 2b3f_A 234 GKAAFNIMGDWAAGYMTTTLKLKPGTDFAWAPSPGTQGVFMMLSDSFGLPKGAKNRQ------------NAINWLRLVGS 301 (400)
T ss_dssp TSCSEEECCTHHHHHHHHTTCCCBTTTBEEEECTTCTTEEEEECEEECCBTTCTTHH------------HHHHHHHHHTS
T ss_pred CceEEEEeccccHhhhhhhhcCCCCCCeEEEeCCCCCCceecccceEEEeCCCCCHH------------HHHHHHHHHcC
Confidence 9999998766555444443 2467765 785 3433 4567899999999999 99999999999
Q ss_pred HHhhHHHHhhcCCCCCCCcc
Q 044097 391 TARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 391 ~e~q~~~a~~~~g~~~P~~~ 410 (439)
+|.|..+++. .|+ .|...
T Consensus 302 ~e~q~~~~~~-~g~-~P~~~ 319 (400)
T 2b3f_A 302 KEGQDTSNPL-KGS-IAARL 319 (400)
T ss_dssp HHHHHHHHHH-HSC-BCSST
T ss_pred HHHHHHHHHh-cCC-CCccc
Confidence 9999998765 344 66654
No 52
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.83 E-value=7.3e-20 Score=193.46 Aligned_cols=247 Identities=17% Similarity=0.160 Sum_probs=167.3
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+||.+.+. ..++++++|++++||+|+++.. ..++++ .+|.+.....++..++++|+|+||++.
T Consensus 4 ~~~l~vw~~~~~~~~~~~~~~~~f~~~~~i~V~~~~~~~~~~kl~~~~~~g~-~pDv~~~~~~~~~~~~~~g~l~~L~~~ 82 (581)
T 3o3u_N 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPD 82 (581)
T ss_dssp TTEEEEECCTTSCHHHHHHHHHHHHHHHCCEEEEECCTTHHHHHHHHHTTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CceEEEEcCCCCchHHHHHHHHHHhhccCcEEEEEecccHHHHHHHHhhCCC-CCcEEEECchhHHHHHhCCccccCCch
Confidence 357888754443 3468999999999999999721 011222 244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. ++ +|+..+.
T Consensus 83 ~--~~~~~~~~~~---~~~---~~~d--G~~y~~P~~~~~~~l~ynkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~ 148 (581)
T 3o3u_N 83 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (581)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred h--hhhhccChHH---HHh---eEEC--CEEEEEeeeccceEEEEEhHHhhc----CCCCHHHHHHHHHHHhhCCCceEE
Confidence 2 2333444332 221 2344 999999999999999999999995 89999999986 34 3444332
Q ss_pred c---ChhH---HHH-hCC------------------HHH---HHHHHHHHhhh--h-cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 N---SPRE---VIV-AGG------------------KIA---VQQNLALLANQ--V-RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~---~~~~---~~~-~~G------------------~d~---~~e~L~~l~~~--v-~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
- .... ++. .+| .+. +.+.+.++... + ...+.++..+.|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~a~~~~~ 228 (581)
T 3o3u_N 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (581)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEEC
T ss_pred eecCChHHHHHHHHhcCCceeecccCcccccccccCCHHHHHHHHHHHHHHhcCcCCCCCChhhHhhHHhcCCEEEEecc
Confidence 1 1111 111 111 023 34445555432 1 11223456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.++++. +|. +| ...++..++|+++++|++ +|++||+ |++|+|.|..+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~~l~s~e~~~~~~~~ 296 (581)
T 3o3u_N 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (581)
T ss_dssp GGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred chhhchHhhcCCceEEEECCCCCCCCCcccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHhhc
Confidence 88877766666778875 574 22 245667899999999999 9999997 99999999999875
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 297 -~~~~~p~~ 304 (581)
T 3o3u_N 297 -KPLGAVAL 304 (581)
T ss_dssp -SCCSEESB
T ss_pred -CCCCccch
Confidence 44545654
No 53
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=99.83 E-value=1.3e-19 Score=191.07 Aligned_cols=246 Identities=17% Similarity=0.139 Sum_probs=166.1
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEee---------ecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNL---------CASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~---------~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+++.|.+. ..++++++|++.+||+|+++... .+++ ..+|.+..+..++..+++.|+|.||++.
T Consensus 4 ~~tLt~w~~~~~~~~~~~~~i~~Fe~~pgIkV~~~~~~~~~~kl~t~~asG-~~PDV~~~~~~~~~~~~~~G~L~~L~~~ 82 (494)
T 1y4c_A 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 82 (494)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHHCCEEEEECCTTHHHHHHHHHTTT-CSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CeEEEEEeCCCchhHHHHHHHHHHHhCcCCEEEEEeCCcHHHHHHHHHhCC-CCCeEEEECcHhHHHHHHCCCeeCCCcc
Confidence 457888876332 34689999996579999997210 1122 2244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~ 278 (439)
. ++.+++.+. +++. ..+| |++||+|+..++.+|+||+++|++ +|+||+||++. +++ |++++.
T Consensus 83 ~--~~~~~~~~~---~~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdlf~~----~P~TwdEl~~~a~klk~~G~~g~~ 148 (494)
T 1y4c_A 83 K--AFQDKLYPF---TWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (494)
T ss_dssp H--HHHTTBCHH---HHHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred h--hhHHhCCHH---HHHh---eEEC--CEEEEEeeeCCeeEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCceEEE
Confidence 1 223444333 2221 2344 999999999999999999999997 79999999983 554 555543
Q ss_pred cCh---hH---HHH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 NSP---RE---VIV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~~~---~~---~~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
.+. .. ++. .+| .+ .+.+++.++... +. ..+.++..+.|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~l~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~l~~L~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 228 (494)
T 1y4c_A 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (494)
T ss_dssp CCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEEC
T ss_pred ecCCchHHHHHHHHhcCCceeccccccccccccccCCHHHHHHHHHHHHHHHCCCCCCCCChhHHHHHHHCCCeEEEEeC
Confidence 211 11 111 111 01 234455555432 11 1222456688999999999988
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. +| ...++.+|+|+++++|++ +|++|| +|++|+|.|..+++.
T Consensus 229 ~w~~~~~~~~~~~~gv~p~P~~~g~~~~~~~g~~~~~I~~~skn~e------------aA~~Fl~~fl~s~e~q~~~~~~ 296 (494)
T 1y4c_A 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (494)
T ss_dssp GGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCEEEEeCCCCCCCCccccccceEEEEECCCCCHH------------HHHHHHHHHHcCHHHHHHHHHH
Confidence 77666555555678776 775 33 234567899999999999 999999 999999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.|+ .|..
T Consensus 297 -~g~-~P~~ 303 (494)
T 1y4c_A 297 -KPL-GAVA 303 (494)
T ss_dssp -SCC-CEES
T ss_pred -hCC-CCCc
Confidence 344 5654
No 54
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=99.83 E-value=1e-19 Score=188.81 Aligned_cols=245 Identities=17% Similarity=0.163 Sum_probs=164.5
Q ss_pred eeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe------e---ecccccccceEecCchhHHHHHHCCCcccccccc
Q 044097 136 VPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN------L---CASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 136 ~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~------~---~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~ 203 (439)
++|+++.+.+. ..++++++|++.+||+|+++.. + .+++ ..+|.+..+..++..++++|+|+||++..
T Consensus 3 ~tlt~w~~~~~~~~~~~~~~~~F~~~pgi~V~~~~~~~~~~kl~~~~asg-~~pDv~~~~~~~~~~~~~~g~l~~L~~~~ 81 (461)
T 3csg_A 3 GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPDK 81 (461)
T ss_dssp -CEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHTTT-CSCSEEEEEHHHHHHHHHTTCBCCCCCCH
T ss_pred eEEEEEeCCCchhHHHHHHHHHHhhccCceEEEEECccHHHHHHHHhcCC-CCCcEEEECchhHHHHHHCCCcccCCccH
Confidence 46788776332 3468999999667999999721 0 1122 22444445667889999999999999751
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC--cccc--Cceeecc
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--PELA--GRISMVN 279 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lk--gkI~~~~ 279 (439)
.+.+++.+. .++. ..+ +|++||+|+..++.+|+|||++|++ +|+||+||++ .+++ |++++..
T Consensus 82 --~~~~~~~~~---~~~~---~~~--dGk~y~vP~~~~~~~l~YNkdl~~~----~P~Twdel~~~~~~l~~~g~~~~~~ 147 (461)
T 3csg_A 82 --AFQDKLYPF---TWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMF 147 (461)
T ss_dssp --HHHTTBCHH---HHHT---TEE--TTEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEECC
T ss_pred --HHHhhccHH---hHhh---eEE--CCEEEEeeccccceEEEEEhhhhcc----CCcCHHHHHHHHHHHhhCCCceeEe
Confidence 223344332 2321 234 4999999999999999999999997 7999999998 3565 6655432
Q ss_pred ChhH------HHH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEcc
Q 044097 280 SPRE------VIV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGWS 328 (439)
Q Consensus 280 ~~~~------~~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~ws 328 (439)
.... ++. .+| .+ .+.+.+.+|... +. ....++..+.|.+|+++|.+.++
T Consensus 148 ~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g~ 227 (461)
T 3csg_A 148 NLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGP 227 (461)
T ss_dssp CTTCHHHHHHHHHHTTCEEEEECSSSEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECG
T ss_pred cCCchHHHHHHHHhcCCeEeecccCcccccccCcCCHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHhcCCeeEEecCc
Confidence 2211 111 121 01 334555555432 11 11224567899999999999877
Q ss_pred ccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhHHHHhhc
Q 044097 329 SDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARALPFKQEV 401 (439)
Q Consensus 329 ~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~~~a~~~ 401 (439)
..+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++|| +|++|+|.|..+++.
T Consensus 228 w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e------------~A~~fl~~~l~s~e~q~~~~~~- 294 (461)
T 3csg_A 228 WAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD- 294 (461)
T ss_dssp GGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH-
T ss_pred chHHHHHhcCCceEEEeCCCCCCCCCCceecceEEEEeCCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh-
Confidence 7665555555678876 775 33 234567899999999999 999999 999999999999865
Q ss_pred CCCCCCCc
Q 044097 402 IPGASPSA 409 (439)
Q Consensus 402 ~g~~~P~~ 409 (439)
.|+ .|..
T Consensus 295 ~g~-~P~~ 301 (461)
T 3csg_A 295 KPL-GAVA 301 (461)
T ss_dssp SCC-CEES
T ss_pred cCC-CCCc
Confidence 344 5654
No 55
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=99.83 E-value=4.2e-20 Score=198.93 Aligned_cols=238 Identities=17% Similarity=0.173 Sum_probs=159.5
Q ss_pred eeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCcccccccc
Q 044097 136 VPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 136 ~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~ 203 (439)
++|+||..++. ..++++++|++++||+|+++.. ..++++ .+|.+.....++..++++|+|+||+++.
T Consensus 19 g~LtvW~~~d~~~~~l~e~~~~Fek~~gIkV~~~~~~~~~~kl~~~~asG~-~PDV~~~~~~~~~~~~~~G~L~~L~~~~ 97 (602)
T 4b3n_A 19 GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPDK 97 (602)
T ss_dssp CCEEEEECSSSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHHTC-SCSEEEEEGGGHHHHHHHTCBCCCCCCH
T ss_pred CEEEEEECCCchHHHHHHHHHHHhcccCCEEEEEeCCCHHHHHHHHHhCCC-CCeEEEEChHHHHHHHHCCCeeeCCcch
Confidence 46777765543 2367999999999999998721 011122 2334445678999999999999998752
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec-
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV- 278 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~- 278 (439)
...+++.+ ..++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||.+. ++ +|+..+.
T Consensus 98 --~~~d~~~~---~~~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdlf~e----~P~TwdEl~~~akklk~~g~~~~~~ 163 (602)
T 4b3n_A 98 --AFQDKLYP---FTWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMF 163 (602)
T ss_dssp --HHHHHBCH---HHHHH---TEET--TEECEEEEEEECCEEEEETTTCSS----CCSBTTHHHHHHHHHHTTTCEEECC
T ss_pred --hhhhhcCH---HHHhh---cEEC--CEEEEEEEecceEEEEEEhHHhcC----CCCCHHHHHHHHHHHhhcCCccccc
Confidence 22233333 22322 2355 999999999999999999999987 79999999874 33 3433221
Q ss_pred --cChhHH---H-HhCC--------H----------HHH---HHHHHHHhhhh--cc-cCchHHHHHhhcCCeEEEEEcc
Q 044097 279 --NSPREV---I-VAGG--------K----------IAV---QQNLALLANQV--RL-FDSTHYLKAFGIGDVWVAVGWS 328 (439)
Q Consensus 279 --~~~~~~---~-~~~G--------~----------d~~---~e~L~~l~~~v--~~-~~~~~~~~~f~~Ge~~~~i~ws 328 (439)
...... + ..+| . +.+ .+.+.++.... .. .+.+.....|.+|+++|.+.++
T Consensus 164 ~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~~~al~~l~~l~~~g~~~~~~~~~~~~~~f~~Gk~Am~~~g~ 243 (602)
T 4b3n_A 164 NLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGP 243 (602)
T ss_dssp CSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECG
T ss_pred CCcchhhHHHHHHhcCCceeeccCCcccccccccCCHHHHHHHHHHHHHHHcCCCCcccchhhHHHHhhcCceEEEEecH
Confidence 111111 1 1111 0 233 34444443321 11 1223456789999999999988
Q ss_pred ccHHHHHHcCCCeeEE-ccC-C----CceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 329 SDVLPAVKRMSNVAVV-VPK-S----GASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 329 ~~~~~~~~~~~~v~~~-vP~-e----G~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
..+..+.+.+.++++. +|. + +...++.+++|+++++|++ +|++||+ |++++|.|..+.+.
T Consensus 244 w~~~~~~~~~~~~gv~~lP~~~g~~~~~~~g~~~~~I~~~Skn~e------------aA~~Fl~~~l~s~e~~~~~~~~ 310 (602)
T 4b3n_A 244 WAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGIDAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 310 (602)
T ss_dssp GGHHHHHHHTCCEEEECCCEETTEECCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEcCCCCCCCCcceEeeEEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHHc
Confidence 8777776666778775 663 1 2345678899999999999 9999997 68899999999865
No 56
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=99.83 E-value=1.2e-19 Score=189.49 Aligned_cols=246 Identities=17% Similarity=0.143 Sum_probs=166.2
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEee---------ecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNL---------CASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~---------~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+++.+.+. ..++++++|++.+||+|+++... .+++ ..+|.+..+..++..++++|+|+||++.
T Consensus 19 ~~tlt~w~~~~~~~~~~~~~i~~F~~~pgi~V~~~~~~~~~~kl~~~~asg-~~PDv~~~~~~~~~~~~~~G~l~~L~~~ 97 (477)
T 2vgq_A 19 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 97 (477)
T ss_dssp TTSEEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHHTTT-CSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHhCcCCeEEEEecCcHHHHHHHHHhCC-CCCeEEEECcHHHHHHHHCCCeecCCcc
Confidence 567888886332 34679999996679999997210 1122 2244444566789999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC--cccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--PELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lk--gkI~~~ 278 (439)
. .+.+++.+. +++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++ .+++ |++++.
T Consensus 98 ~--~~~~~~~~~---~~~~---~~~d--Gk~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~g~~ 163 (477)
T 2vgq_A 98 K--AFQDKLYPF---TWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 163 (477)
T ss_dssp H--HHHTTBCHH---HHHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEEC
T ss_pred h--hhHhhCCHH---HHHh---eEEC--CEEEEEecccCceEEEEehHhhcc----CCCCHHHHHHHHHHHHhCCcceeE
Confidence 1 223344333 2221 2344 999999999999999999999997 7999999998 3565 665543
Q ss_pred cCh--h-H---HHH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 NSP--R-E---VIV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~~~--~-~---~~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
... . . ++. .+| .+ .+.+.+.++... +. ....++..+.|.+|+++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~G~~am~~~g 243 (477)
T 2vgq_A 164 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 243 (477)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEEC
T ss_pred ecCCCchHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHCCCCCCCCCchHHHHHHHcCCeeEEecC
Confidence 221 1 1 111 111 01 234455555432 11 1122356688999999999987
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++|| +|++|+|.|..+++.
T Consensus 244 ~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~s~~~e------------aA~~fl~~~l~s~e~q~~~~~~ 311 (477)
T 2vgq_A 244 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 311 (477)
T ss_dssp GGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred CchHHHHhhcCCCeEEEeCCCCCCCCCcceecceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh
Confidence 77665555555678876 775 33 234567899999999999 999999 999999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.|+ .|..
T Consensus 312 -~g~-~P~~ 318 (477)
T 2vgq_A 312 -KPL-GAVA 318 (477)
T ss_dssp -SCC-CEES
T ss_pred -cCC-CCCc
Confidence 444 5654
No 57
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=99.83 E-value=1.4e-19 Score=192.11 Aligned_cols=247 Identities=17% Similarity=0.159 Sum_probs=168.0
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
+++|+|+.+++. ..++++++|++++||+|+++.. ..+++ ..+|.+.....++..++++|+|+||++.
T Consensus 6 ~~tLtvw~~~~~~~~~~~~~i~~F~~~~gI~V~~~~~~~~~~kl~~~~asg-~~PDv~~~~~~~~~~~~~~G~l~~L~~~ 84 (539)
T 3h3g_A 6 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 84 (539)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHTTTT-CSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CceEEEEeCCCcchHHHHHHHHHHHhCcCcEEEEEechHHHHHHHHHHhCC-CCCeEEEECchhHHHHHHCCceecCCcc
Confidence 457888876654 3468999999999999999721 01122 2244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. ++ +|+..+.
T Consensus 85 ~--~~~~~~~~~~---~~~---~~~d--Gk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 150 (539)
T 3h3g_A 85 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 150 (539)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred H--HHHhhcCHHH---HHh---ceEC--CEEEEEeeecCceEEEEEhHHhcC----CCCCHHHHHHHHHHHHhCCCceEE
Confidence 2 2233443332 321 2344 999999999999999999999995 89999999985 34 3444332
Q ss_pred ---cChhHH---HH-hCC------------------HH---HHHHHHHHHhhh--h-cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 ---NSPREV---IV-AGG------------------KI---AVQQNLALLANQ--V-RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ---~~~~~~---~~-~~G------------------~d---~~~e~L~~l~~~--v-~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
...... +. .+| .+ .+++.+.++... + ...+.++..+.|.+|+++|.+.+
T Consensus 151 ~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 230 (539)
T 3h3g_A 151 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 230 (539)
T ss_dssp CCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEEC
T ss_pred eecCcHHHHHHHHHhcCCceeecccccccccccCCCCHHHHHHHHHHHHHHHcCCCCCCCChhHHHHHHHCCCeeEEEec
Confidence 111111 11 111 02 234445555432 1 11222456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.++++. +|. .| ...++..++|+++++|++ +|++||+ |++|+|.|..+.+.
T Consensus 231 ~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~s~~~e------------aA~~Fl~~~l~s~e~q~~~~~~ 298 (539)
T 3h3g_A 231 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 298 (539)
T ss_dssp GGGHHHHHHHTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTTSHHHHHHHHHH
T ss_pred chhhhhHHHcCCcEEEEECCCCCCCCCcccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHhc
Confidence 88877766666778876 674 12 245567899999999999 9999997 99999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 299 -~~~~~p~~ 306 (539)
T 3h3g_A 299 -KPLGAVAL 306 (539)
T ss_dssp -SCCCEESB
T ss_pred -CCCCCccc
Confidence 45545654
No 58
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=99.83 E-value=9e-20 Score=185.75 Aligned_cols=241 Identities=10% Similarity=0.092 Sum_probs=158.5
Q ss_pred ceeEEEEeCCCC-----ccHHHHHHHHhhc-CCeEEEEEeeec--cc----------ccccceEecCchhHHHHHHCCCc
Q 044097 135 TVPLRVVSLQNS-----VPQSWVKDFMRSQ-GKRLKFQMNLCA--SI----------DGIVNNLSTPFNKLSFAIKKRFI 196 (439)
Q Consensus 135 ~~~L~v~~w~~~-----~~~~li~~Fek~~-GI~V~~~~~~~~--s~----------~~~~~dv~~~~~~~~~~i~~Gll 196 (439)
.++|+++.|.+. ..++++++|++++ ||+|+++....+ .. ...+|.+.....++..++++|+|
T Consensus 15 ~~tl~~~~~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~~~~~~~~~g~l 94 (412)
T 2z8f_A 15 VVNITYMHRLPDSEGMTLVNDIVAKWNKQHPDIQVKATKFDGKASDMIKKLETDVKSGEAPDLAQVGYAELPEVFTKGLL 94 (412)
T ss_dssp CEEEEEEECCCCCTTSCCHHHHHHHHHHHCTTEEEEEEECSSCGGGHHHHHHHHHHHTCCCSEEEEEGGGHHHHHHTTCB
T ss_pred CEEEEEEecCCCcchHHHHHHHHHHHHHHCCCceEEEEecCCchhhHHHHHHHHHhcCCCCcEEEeCchhHHHHHHCCCe
Confidence 468899888653 3478999999996 999999732211 10 11233334556789999999999
Q ss_pred ccccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCC-CCCCcccccCc--ccc-
Q 044097 197 EPIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLA-PIEDWKDPWWP--ELA- 272 (439)
Q Consensus 197 ~pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~-~P~TW~DL~dp--~lk- 272 (439)
+||++.. .++..++. +.+++. ..+| |++||+|+..++.+|+|||++|+++|++ +|+||+||++. +++
T Consensus 95 ~~L~~~~-~~~~~~~~---~~~~~~---~~~~--G~~y~vP~~~~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~~~~l~~ 165 (412)
T 2z8f_A 95 QDVTQYA-EQYKNDFA---SGPYSL---VQVG--GKAYGLPQDTGPLVYFYNKAEFEKLGITEIPQTADEFIAAAKTAAA 165 (412)
T ss_dssp CCCHHHH-HHHGGGBC---HHHHHT---TEET--TEECEEECBCCBEEEEEEHHHHHHTTCCSCCCBHHHHHHHHHHHHH
T ss_pred ecchHHH-HHHHHhcc---HHHHhh---hccC--CeEEEeeccCCceEEEEeHHHHHHcCCCCCCCCHHHHHHHHHHHHh
Confidence 9998741 11122222 333321 2344 9999999999999999999999999998 99999999985 443
Q ss_pred -Cceee--ccCh-hHHH----H-hCC--------------HHH---HHHHHHHHhhh--hcc--cCchHHHHHhhcCCeE
Q 044097 273 -GRISM--VNSP-REVI----V-AGG--------------KIA---VQQNLALLANQ--VRL--FDSTHYLKAFGIGDVW 322 (439)
Q Consensus 273 -gkI~~--~~~~-~~~~----~-~~G--------------~d~---~~e~L~~l~~~--v~~--~~~~~~~~~f~~Ge~~ 322 (439)
|...+ .... ...+ . .+| .+. +.+++.++... +.. .+.++..+.|.+|+++
T Consensus 166 ~g~~~~~~~~~~~~~~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~~f~~G~~a 245 (412)
T 2z8f_A 166 AGKYIMSYQPDEAGNMISGLAGASGGWYKVKGDSWVVNTETDGSKATADFYQQLLDAKAATTNPRWDPSFDASIKDGSLI 245 (412)
T ss_dssp TTCBSCBCCGGGTTTHHHHHHHTTCCSEEEETTEEEECCCCHHHHHHHHHHHHHHHTTCSBCCCTTSHHHHHHHHTTCBC
T ss_pred cCCceeecCCcccchHHHHHHHhcCceEecCCCeeeecCCCHHHHHHHHHHHHHHHcCCcCccccCCHHHHHHHhCCCEE
Confidence 33222 1111 1111 1 121 122 34455555432 111 1124566789999999
Q ss_pred EEEEccccHHHHHHc-----CCCeeEE-ccC--CCc----eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 044097 323 VAVGWSSDVLPAVKR-----MSNVAVV-VPK--SGA----SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQ 390 (439)
Q Consensus 323 ~~i~ws~~~~~~~~~-----~~~v~~~-vP~--eG~----~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS 390 (439)
|.+.++..+..+.+. ..++++. +|. +|. ..++.+++|+++++|++ +|++||+||++
T Consensus 246 m~~~g~w~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~~~~~~~~~~~~i~~~s~~~e------------~A~~fl~~l~s 313 (412)
T 2z8f_A 246 GTVAAAWEAPLFMTSSGGTGSGEWQVAQLGDWFGNAGKTGPDGGSAVAVLKNSKHPK------------EAMEFLDWFNT 313 (412)
T ss_dssp EEEEEGGGHHHHHHHHTTTTTTTEEEEECCBCSSCTTCBCBCCCEEEEEBTTCSCHH------------HHHHHHHHHTT
T ss_pred EEecccchhhHHhhhCCcCcccceEEEcCCCCCCCCCccccCCcceEEEeCCCCCHH------------HHHHHHHHHcc
Confidence 999876655444432 2367764 775 232 34457899999999999 99999999999
Q ss_pred H-HhhHH
Q 044097 391 T-ARALP 396 (439)
Q Consensus 391 ~-e~q~~ 396 (439)
+ +.|..
T Consensus 314 ~~e~~~~ 320 (412)
T 2z8f_A 314 QVPDLVS 320 (412)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 7 77765
No 59
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=99.83 E-value=8.5e-20 Score=193.04 Aligned_cols=247 Identities=17% Similarity=0.168 Sum_probs=167.9
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
+++|+||.+++. ..++++++|++++||+|+++.. ..++++ .+|.+.....++..++++|+|+||+..
T Consensus 5 ~~tLtvW~~~~~~~~~~~~~i~~Fe~~~gI~V~~~~~~~~~~kl~~~~asg~-~PDV~~~~~~~~~~~~~~G~l~~L~~~ 83 (522)
T 3mp6_A 5 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPD 83 (522)
T ss_dssp TTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CceEEEEeCCCCchHHHHHHHHHHhhccCcEEEEEechhHHHHHHHHhhCCC-CCeEEEECChhHHHHHhCCCcccCCcc
Confidence 357888755443 3468999999999999999721 011222 244445667889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||++. ++ +|+..+.
T Consensus 84 ~--~~~~~~~~~~---~~~---~~~d--Gk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 149 (522)
T 3mp6_A 84 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 149 (522)
T ss_dssp H--HHHHTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred h--hhhhhcChHh---Hhh---EEEC--CEEEEEeeeccceEEEEEhHhhcc----CCcCHHHHHHHHHHHHhCCCceEE
Confidence 2 2333444332 221 2344 999999999999999999999995 89999999985 33 3443322
Q ss_pred ---cChh---HHHH-hCC------------------HH---HHHHHHHHHhhhh---cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 ---NSPR---EVIV-AGG------------------KI---AVQQNLALLANQV---RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ---~~~~---~~~~-~~G------------------~d---~~~e~L~~l~~~v---~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
.... .++. .+| .+ .+.+.+.++...- ...+.++..+.|.+|+++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~Gg~~~~~~~~~~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 229 (522)
T 3mp6_A 150 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 229 (522)
T ss_dssp CCSSSGGGTHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEEC
T ss_pred eecCchHHHHHHHHhcCCceeeccccccccCccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHhhHHhcCCEeEEecc
Confidence 1111 1111 111 02 3445555554331 11223456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.++++. +|. .| ...++.+++|+++++|++ +|++||+ |++|+|.|..+.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~~ 297 (522)
T 3mp6_A 230 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 297 (522)
T ss_dssp GGGHHHHHHSSCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred CcchhhhhhcCCceEEEECCCCCCCCCcccccceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHhc
Confidence 88877776666677776 674 22 245667899999999999 9999996 99999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 298 -~~~~~p~~ 305 (522)
T 3mp6_A 298 -KPLGAVAL 305 (522)
T ss_dssp -SCCSEESB
T ss_pred -CCCCccch
Confidence 45555654
No 60
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=99.83 E-value=1.3e-20 Score=192.92 Aligned_cols=238 Identities=14% Similarity=0.156 Sum_probs=150.8
Q ss_pred HHHHHHHHhhc-CCeEEEEEeeec-cc---------ccccceEe-cCchhH-HHHHHCCCcccccccccchhhcccchhH
Q 044097 149 QSWVKDFMRSQ-GKRLKFQMNLCA-SI---------DGIVNNLS-TPFNKL-SFAIKKRFIEPIAEAEDQDWFKRLSHKW 215 (439)
Q Consensus 149 ~~li~~Fek~~-GI~V~~~~~~~~-s~---------~~~~~dv~-~~~~~~-~~~i~~Gll~pl~~~~~~~~~~~i~~~~ 215 (439)
++++++|++++ ||+|+++....+ .. .+..+||+ ....++ ..++++|+|+||++.. +. .++.+.+
T Consensus 60 ~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~a~g~~pDv~~~~~~~~~~~~~~~g~l~~L~~~~--~~-~~~~~~~ 136 (430)
T 2w7y_A 60 RDLYDKFAEEHKDSGVEFKPTPVNGDLKDIMNNKVASGEFPDVIDLAGNAVSLAAIEQKLVLDLKPYI--DS-NKLEKNV 136 (430)
T ss_dssp HHHHHHHHHHC--CCSEEEEEECSSCHHHHHHHHHTTTCCCSEEECTTCCCCHHHHHTTCBCCCHHHH--HH-TTCHHHH
T ss_pred HHHHHHHHHHCCCceEEEEeCCCCccHHHHHHHHHhCCCCCcEEEeCCchHHHHHHhCCCccCchHhh--cc-ccHhhhh
Confidence 57999999998 999988732222 11 11123554 444444 3467899999998641 11 1333332
Q ss_pred HHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCC---CCcccccCc--ccc--C-ceeeccChh--HHH
Q 044097 216 KVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPI---EDWKDPWWP--ELA--G-RISMVNSPR--EVI 285 (439)
Q Consensus 216 ~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P---~TW~DL~dp--~lk--g-kI~~~~~~~--~~~ 285 (439)
+...+. ..+ +|++||+|+..++.+|+|||++|+++|+++| +||+||++. +++ | .+++..... ..+
T Consensus 137 ~~~~~~---~~~--dGk~ygvP~~~~~~~l~YNkdl~~~aGl~~P~~~~Twdel~~~~~~l~~~g~~~~~~~~~~~~~~~ 211 (430)
T 2w7y_A 137 GLNYKQ---NQK--DGKIYTVHEQLFTMGLWYNKDIFAKAGAKTPDQWNTWDDFTQAMASIRKQDGVYAFGAGEPSIRLF 211 (430)
T ss_dssp TTHHHH---TEE--TTEECCBCSBCEEECEEEEHHHHHHHTCCCGGGCCSHHHHHHHHHHHHTSSSCEEECCBTTHHHHH
T ss_pred hHhhhc---cCc--CCeEEEeeccccceEEEEeHHHHHHcCCCCCCCCCCHHHHHHHHHHHHhcCCceEeeCCchHHHHH
Confidence 211111 134 4999999999999999999999999999877 899999885 454 3 355432211 111
Q ss_pred ---Hh---CCH--------------HH---HHHHHHHHhhh--hccc--CchHHHHHhhcCCeEEEEEccccHHHHHHcC
Q 044097 286 ---VA---GGK--------------IA---VQQNLALLANQ--VRLF--DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM 338 (439)
Q Consensus 286 ---~~---~G~--------------d~---~~e~L~~l~~~--v~~~--~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~ 338 (439)
.. .|. +. +.+.+.++... .... +..+..+.|.+|+++|.+.++.....+.+ .
T Consensus 212 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~w~~~~~~~-~ 290 (430)
T 2w7y_A 212 NTVLGTTENGRKLLDKPLTKEGIESKEFADALKMVMKEIQANGSKNAGGDANAYSKDFQEGKSAVFFNGVWASGEMSK-N 290 (430)
T ss_dssp HHHHTTSHHHHHHTTSCCCTTTTTSHHHHHHHHHHHHHHHHTCGGGCSBCHHHHHHHHHTTSEEEECCCGGGHHHHTT-S
T ss_pred HHHHhhhcccceeccccccccccCCHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHhcCCeEEEEcChhhhhhhhc-C
Confidence 10 111 22 34445555432 1111 22456788999999999877665544433 3
Q ss_pred CCeeEE-ccCC-CceeeeeEEEEecC--CCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 339 SNVAVV-VPKS-GASLWADLWAIPAA--SRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 339 ~~v~~~-vP~e-G~~~~~~~~aI~k~--a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
.++++. +|.. +...++.+++|+++ ++|++ +|++||+|++|+|.|..+.+. .|+ .|..
T Consensus 291 ~~~~~~~~P~~~~~~~~~~~~~i~~~~~s~~~e------------~A~~fl~~l~s~e~~~~~~~~-~g~-~P~~ 351 (430)
T 2w7y_A 291 PSLAPGIYPAGVAISSSGGGITISSKMSEAKQK------------LALEFLKYMTSDDVQKVIFEK-VGA-NPSN 351 (430)
T ss_dssp TTEEEECBGGGEEEEECCCCEEEBSSSCHHHHH------------HHHHHHHHHTSHHHHHHHHHT-SCS-CBSC
T ss_pred CCCceeccCCCcccccCCcceEEecCCCcccHH------------HHHHHHHHhcCHHHHHHHHHH-hCC-CCCC
Confidence 567764 6753 22345568999997 67888 999999999999999998865 344 6654
No 61
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=99.83 E-value=1.4e-20 Score=198.54 Aligned_cols=242 Identities=15% Similarity=0.120 Sum_probs=147.7
Q ss_pred eeEEEEeCCCCcc-----HHHHHHHHhhcCCeEEEEEeee-----------cccccccceEecCchhHHHHH-HCCCccc
Q 044097 136 VPLRVVSLQNSVP-----QSWVKDFMRSQGKRLKFQMNLC-----------ASIDGIVNNLSTPFNKLSFAI-KKRFIEP 198 (439)
Q Consensus 136 ~~L~v~~w~~~~~-----~~li~~Fek~~GI~V~~~~~~~-----------~s~~~~~~dv~~~~~~~~~~i-~~Gll~p 198 (439)
++|+++.|.+... ..+++.|++++||+|+++.... +++ + .+||+....+...+. ++|+|.|
T Consensus 40 ~~l~~~~~~~~~~~~~~~~~~~~~fe~~~gi~V~~~~~~~~~~~~kl~~~~asg-~-~pDi~~~~~~~~~~~~~~G~l~~ 117 (535)
T 3omb_A 40 PIVTVLVKKNANQEKMANMQWAKDLEADCDCKIEWQEVTREAWAQQKNATLASG-D-IADVNLNGYGAVEAYQYPGMFED 117 (535)
T ss_dssp BEEEEEEEECTTBCCGGGCHHHHHHHHHHTSEEEEEEEEHHHHHHHHHHHHHHT-C-CCSEEESSCCTHHHHHSTTSBCC
T ss_pred ceEEEEEecCCCCCChhhhHHHHHHHHHHCCeEEEEecCchhHHHHHHHHHhCC-C-CCcEEEecCChhhhHhcCCcEEe
Confidence 3577777764422 2499999999999999973221 122 2 345554344556666 6999999
Q ss_pred ccccccchhhcccchhH---HHhhhcCCCcccCCCCCEEEeeee------cceEEEEEeCcccccCCCCCCCCcccccCc
Q 044097 199 IAEAEDQDWFKRLSHKW---KVYLRSNDAGEIDPRGKIWAAPYR------WGTMAIGYKKSKFQNHNLAPIEDWKDPWWP 269 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~---~~~l~~~~~~~~D~dGk~YgvP~~------~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp 269 (439)
|++.. +..+++.+.+ +.++.. ....+|++|++|+. ..+.+++||+++|+++|+++|+||+||++.
T Consensus 118 L~~~i--~~~~~~~~~~~~~p~~~~~----~~~~dG~~Y~lP~~~~~~~~~~~~~l~ynkdll~~~Gl~~P~Twdel~~~ 191 (535)
T 3omb_A 118 LSKDL--DKLPNVKAFFKQKPDAKKM----STDSKGRIYAIADGRGKAYSGTGQHMLINKAWLDKLGLQVPTTWDELENV 191 (535)
T ss_dssp GGGGG--GGCHHHHHHHHHCHHHHHH----HCCTTSCCSSEEEECCGGGCSCSCEEEEEHHHHHHHTCCCCCBHHHHHHH
T ss_pred hHHHH--HhChhHHHHHHhCHHHHHh----ccCCCCCEEEeecccCcCccccccceEeeHHHHHHcCCCCCCCHHHHHHH
Confidence 99752 2223444432 223321 12246999999999 556899999999999999999999999874
Q ss_pred --ccc-------C---ceeec--cC------h---hHHHHh-------------------CCH-------HH---HHHHH
Q 044097 270 --ELA-------G---RISMV--NS------P---REVIVA-------------------GGK-------IA---VQQNL 297 (439)
Q Consensus 270 --~lk-------g---kI~~~--~~------~---~~~~~~-------------------~G~-------d~---~~e~L 297 (439)
+++ | .+.+. .. . ..++.. .|. +. +.+.+
T Consensus 192 ~~~~k~~~p~g~G~~~~~p~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 271 (535)
T 3omb_A 192 LKAFKTQDPNGNGQADEIPMNIKKLEGSYFTWYSPMLLLNSTGIVTGFNKGVSEYGFYAKNGVVKSFLTSDEYKEVIKYY 271 (535)
T ss_dssp HHHHHHSCTTCSSSSCCEEECCCCCCSSSCCTTCGGGGGGGGTCCCCTTSSGGGGTEEEETTEEEEGGGSHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCeeeeEeccCCCcccchhhHHHHHHhhCCCcccccCCCCceEEecCCEEEecCCCHHHHHHHHHH
Confidence 333 1 23332 10 0 001111 111 23 34445
Q ss_pred HHHhhh--h--ccc--CchHHHH-HhhcC---CeEEEEEccccHHHHHHcCCCeeEE-ccCC--Cc-----------eee
Q 044097 298 ALLANQ--V--RLF--DSTHYLK-AFGIG---DVWVAVGWSSDVLPAVKRMSNVAVV-VPKS--GA-----------SLW 353 (439)
Q Consensus 298 ~~l~~~--v--~~~--~~~~~~~-~f~~G---e~~~~i~ws~~~~~~~~~~~~v~~~-vP~e--G~-----------~~~ 353 (439)
.+|... + ..+ +.++... .|..| +++|.+.|....... ....++.++ +|.. |. ...
T Consensus 272 ~~l~~~G~~~~~~~t~~~~~~~~~~~~~G~~a~~a~~~~w~~~~~~~-~~~~~~~~~p~p~~~~g~~~~~~~~~~~~~~~ 350 (535)
T 3omb_A 272 HKLISEGLIPAEWATKDDDAYNADQISDGKTAKTGVVFGWSPSDNFG-KLKDQYIAMPVPSAPGVSPDQTVWDGSSSELS 350 (535)
T ss_dssp HHHHHTTSSCTTGGGCCHHHHHHHHHTTSSSCCEEEEEESCHHHHHG-GGGGGEEECCCCBCTTCCGGGCCCCCCCSSEE
T ss_pred HHHHHCCCCChhhhcCCHHHHHHHHhcCCCcceEEEEeecccccccC-CCcccEEEecCccCCCCCcccceecccccccc
Confidence 555322 1 011 1223333 45777 899988886443221 112344443 4432 22 234
Q ss_pred eeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHH
Q 044097 354 ADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFK 398 (439)
Q Consensus 354 ~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a 398 (439)
..+++|+++++|++ +|++||+|++|+|.|..+.
T Consensus 351 ~~~~~I~~~sk~~e------------~A~~fl~~l~s~e~q~~~~ 383 (535)
T 3omb_A 351 PAGLSISSHAANKD------------AALKLANLLYSEKYSVQQF 383 (535)
T ss_dssp EEEEEEBTTCTTHH------------HHHHHHHHHTSHHHHHHHH
T ss_pred CCeEEEECCCCCHH------------HHHHHHHHhcCHHHHHHHh
Confidence 57899999999999 9999999999999999764
No 62
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=99.83 E-value=1.1e-19 Score=189.67 Aligned_cols=246 Identities=17% Similarity=0.139 Sum_probs=165.9
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEee---------ecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNL---------CASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~---------~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+++.|.+. ..++++++|++.+||+|+++... .+++ ..+|.+.....++..++++|+|+||+..
T Consensus 4 ~~tLt~w~~~~~~~~~~~~~i~~Fe~~pgI~V~~~~~~~~~~kl~~~~asg-~~PDv~~~~~~~~~~~~~~G~l~~L~~~ 82 (465)
T 2zxt_A 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 82 (465)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCSSHHHHHHHHHHSS-CCCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHhCcCceEEEEeCCcHHHHHHHHHhCC-CCCeEEEECchhHHHHHHCCceecCCcc
Confidence 457888886432 34689999996679999997210 1122 2244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccC--cccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--PELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p~lk--gkI~~~ 278 (439)
. .+..++.+. +++. ..+ +|++||+|+..++.+|+|||++|++ +|+||+||++ .+++ |++++.
T Consensus 83 ~--~~~~~~~~~---~~~~---~~~--dGk~YgvP~~~~~~~l~YNkdlf~~----~P~Twdel~~~a~~l~~~G~~g~~ 148 (465)
T 2zxt_A 83 K--AFQDKLYPF---TWDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (465)
T ss_dssp H--HHHTTBCHH---HHHT---TBS--SSSBCSEEEEEECCEEECBTTTBSS----CCSSSTTSHHHHTTSCSSSCCSBC
T ss_pred h--hhhhhccHH---hHhh---eEE--CCEEEEeeccccceEEEEEhHhhcC----CCcCHHHHHHHHHHHhcCCcceeE
Confidence 1 223344332 2321 234 4999999999999999999999997 7999999998 4666 555443
Q ss_pred cCh---hH---HHH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 NSP---RE---VIV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~~~---~~---~~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
... .. ++. .+| .+ .+++++.+|... +. ..+.++..+.|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~Gg~~~~~~~g~~d~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 228 (465)
T 2zxt_A 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (465)
T ss_dssp CCSSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHHTCCSBEEEC
T ss_pred ecCcchHHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCcchHHHHHHCCCeeEEEeC
Confidence 221 11 111 121 02 234555555432 11 1122456688999999999987
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. +| ...++..++|+++++|++ +|++|| +|++|+|.|..+++.
T Consensus 229 ~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk~~e------------aA~~Fi~~~l~s~e~q~~~~~~ 296 (465)
T 2zxt_A 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (465)
T ss_dssp TTTHHHHHHHTCCCCEECCCCGGGSCCCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred CchHHHHhhcCCceEEEeCCCCCCCCCccccccceEEEECCCCCHH------------HHHHHHHHHHcCHHHHHHHHHh
Confidence 77665555555678876 775 22 234567899999999999 999999 999999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.|+ .|..
T Consensus 297 -~g~-~P~~ 303 (465)
T 2zxt_A 297 -KPL-GAVA 303 (465)
T ss_dssp -SCC-CEES
T ss_pred -cCC-CCCc
Confidence 344 5654
No 63
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.82 E-value=2.6e-19 Score=188.36 Aligned_cols=246 Identities=17% Similarity=0.137 Sum_probs=165.8
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEee---------ecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMNL---------CASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~~---------~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+++.|.+. ..++++++|++.+||+|+++... .+++ ..+|.+..+..++..++++|+|+||++.
T Consensus 5 ~~tlt~w~~~~~~~~~~~~~i~~F~~~pgi~V~~~~~~~~~~kl~~~~aag-~~PDv~~~~~~~~~~~~~~G~l~~L~~~ 83 (509)
T 1r6z_P 5 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 83 (509)
T ss_dssp CSSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHHT-CSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CcEEEEEeCCCchhHHHHHHHHHHHhccCceEEEEecCchHHHHHHHHhCC-CCCcEEEECcHhHHHHHHCCceecCCcc
Confidence 357888876432 34689999996579999997210 1112 2244444567889999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~ 278 (439)
. ++.+++.+.. ++. ..+| |++||+|+..++.+++|||++|++ +|+||+||++. +++ |++++.
T Consensus 84 ~--~~~~~~~~~~---~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~g~~ 149 (509)
T 1r6z_P 84 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 149 (509)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEEC
T ss_pred h--hhhhhCCHHH---Hhh---eEEC--CEEEEeccccCceEEEEEhHhhcC----CCCCHHHHHHHHHHHHhCCcceeE
Confidence 1 2234444332 221 2344 999999999999999999999997 79999999983 554 665543
Q ss_pred cCh---hH---HHH-hCC------------------HH---HHHHHHHHHhhh--hc-ccCchHHHHHhhcCCeEEEEEc
Q 044097 279 NSP---RE---VIV-AGG------------------KI---AVQQNLALLANQ--VR-LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 ~~~---~~---~~~-~~G------------------~d---~~~e~L~~l~~~--v~-~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
... .. ++. .+| .+ .+.+.+.++... +. ..+.++..+.|.+|+++|.+.+
T Consensus 150 ~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 229 (509)
T 1r6z_P 150 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 229 (509)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEEC
T ss_pred ecCCCcHHHHHHHHhcCCeecccccccccccccccCCHHHHHHHHHHHHHHHcCCCCCCCChhHHHHHHHcCCeeEEEcC
Confidence 221 11 111 121 01 234555555432 11 1122456688999999999987
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH-HHHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI-EFCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI-~fllS~e~q~~~a~~ 400 (439)
+..+..+.+.+.+++++ +|. +| ...++.+++|+++++|++ +|++|| +|++|+|.|..+++.
T Consensus 230 ~w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~~~~~~~I~~~sk~~e------------aA~~fl~~~l~s~e~q~~~~~~ 297 (509)
T 1r6z_P 230 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 297 (509)
T ss_dssp GGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTTSHHHHHHHHHH
T ss_pred cchHHHHHhcCCceEEEeCCCCCCCCCcceecccEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh
Confidence 77666555555678776 775 33 234567899999999999 999999 999999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.|+ .|..
T Consensus 298 -~g~-~P~~ 304 (509)
T 1r6z_P 298 -KPL-GAVA 304 (509)
T ss_dssp -SCC-SEES
T ss_pred -cCC-CCCc
Confidence 344 5654
No 64
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=99.82 E-value=1.2e-19 Score=184.34 Aligned_cols=253 Identities=15% Similarity=0.159 Sum_probs=162.4
Q ss_pred eeEEEEeCCC--C--ccHHHHHHHHhhc-CCeEEEEEeeeccc-----------ccccc-eEe-cCchhHHHHHHCCCcc
Q 044097 136 VPLRVVSLQN--S--VPQSWVKDFMRSQ-GKRLKFQMNLCASI-----------DGIVN-NLS-TPFNKLSFAIKKRFIE 197 (439)
Q Consensus 136 ~~L~v~~w~~--~--~~~~li~~Fek~~-GI~V~~~~~~~~s~-----------~~~~~-dv~-~~~~~~~~~i~~Gll~ 197 (439)
++|+++.+.+ . ..++++++|++++ ||+|+++....+.. .+..+ ||+ ....++..++++|+|.
T Consensus 4 ~~l~~w~~~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~kl~~~~aag~~P~Dv~~~~~~~~~~~~~~g~l~ 83 (409)
T 1eu8_A 4 GKIVFAVGGAPNEIEYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDVAWLGQFIASGWLE 83 (409)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEEETTTHHHHHHHTCBC
T ss_pred ccEEEEeCCCCChHHHHHHHHHHHHHHCCCeEEEEEECChhhhHHHHHHHHHHhcCCCCCCEEEEccccHHHHHHCCCeE
Confidence 4788887752 1 2368999999998 99999973221110 11123 554 5567899999999999
Q ss_pred cccccccchhhc--ccchhHHHhhhcCCCc-ccCCCCCEEEeeeecceEEEEEeCcccccCCC-CCCCCcccccCc--cc
Q 044097 198 PIAEAEDQDWFK--RLSHKWKVYLRSNDAG-EIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNL-APIEDWKDPWWP--EL 271 (439)
Q Consensus 198 pl~~~~~~~~~~--~i~~~~~~~l~~~~~~-~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl-~~P~TW~DL~dp--~l 271 (439)
||++.. +. . ..++..+..++. . .+| |++||+|+..++.+|+|||++|+++|+ ++|+||+||.+. ++
T Consensus 84 ~L~~~~--~~-~~~~~~~~~~~~~~~---~~~~d--Gk~ygvP~~~~~~~l~Ynkdlf~~aGl~~~P~Twdel~~~a~~l 155 (409)
T 1eu8_A 84 PLDDYV--QK-DNYDLSVFFQSVINL---ADKQG--GKLYALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEMAQKI 155 (409)
T ss_dssp CSHHHH--HH-HTCCGGGBCHHHHHH---HTEET--TEECCEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHHHHHH
T ss_pred echhhc--cc-cccchhhhhHHHHHH---hccCC--CEEEEEeeeccceEEEEEHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 998752 11 1 123333333321 2 354 999999999999999999999999995 899999999874 33
Q ss_pred c--C------ceee--ccCh-h----HH--H-H-hC--------CH-------HHH---HHHHHHHh-hh--h-----cc
Q 044097 272 A--G------RISM--VNSP-R----EV--I-V-AG--------GK-------IAV---QQNLALLA-NQ--V-----RL 306 (439)
Q Consensus 272 k--g------kI~~--~~~~-~----~~--~-~-~~--------G~-------d~~---~e~L~~l~-~~--v-----~~ 306 (439)
+ | ..++ .... . .. + . .+ |. +.+ .+.+.+|. .. + ..
T Consensus 156 ~~~~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~al~~~~~l~~~~g~~~~~~~~~ 235 (409)
T 1eu8_A 156 QSGERETNPNFWGFVWQGKQYEGLVCDFVEYVYSNGGSLGEFKDGKWVPTLNKPENVEALQFMVDLIHKYKISPPNTYTE 235 (409)
T ss_dssp HHHHTTTCTTCEEEECCCSSSHHHHHHHHHHHHTTTCCSEEEETTEEEECTTCHHHHHHHHHHHHHHHTSCCSCGGGGTT
T ss_pred HhcccCCCCCcceEEEecCCCcchhhHHHHHHHhcCCceeccccCccceeecCHHHHHHHHHHHHHHhhcCcCCCccccc
Confidence 2 1 2322 2111 1 11 1 1 11 22 233 34444444 21 1 11
Q ss_pred cCchHHHHHhhcCCeEEEEEccccHHHHHHcC----CCeeEE-ccC--CC---ceeeeeEEEEecCCCCcccccCCCCCC
Q 044097 307 FDSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM----SNVAVV-VPK--SG---ASLWADLWAIPAASRLETKQIGGQVRG 376 (439)
Q Consensus 307 ~~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~----~~v~~~-vP~--eG---~~~~~~~~aI~k~a~~~e~~~~~~~~~ 376 (439)
++..+..+.|.+|+++|.+.++.....+.... .++++. +|. .+ ...++.+++|+++++|++
T Consensus 236 ~~~~~~~~~f~~Gk~am~~~g~w~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~gg~~~~i~~~s~~~e--------- 306 (409)
T 1eu8_A 236 MTEEPVRLMFQQGNAAFERNWPYAWGLHNADDSPVKGKVGVAPLPHFPGHKSAATLGGWHIGISKYSDNKA--------- 306 (409)
T ss_dssp CCHHHHHHHHHTTCEEEEEECTHHHHHHTSTTCTTTTCEEEECCCBCTTSCCCCBEEEEEEEEBTTCSCHH---------
T ss_pred CCHHHHHHHHhCCCEEEEecCHHHhhccCCCCccccCceEEEeCCCCCCCCcccccCceeEEecCCCCCHH---------
Confidence 12234667899999999998776554443221 256664 663 22 224456899999999999
Q ss_pred CHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCcc
Q 044097 377 PSPLIHQWIEFCLQTARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 377 ~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~~ 410 (439)
+|++||+|++++|.|..+.+. . +..|...
T Consensus 307 ---~A~~fl~~l~s~e~~~~~~~~-~-g~~P~~~ 335 (409)
T 1eu8_A 307 ---LAWEFVKFVESYSVQKGFAMN-L-GWNPGRV 335 (409)
T ss_dssp ---HHHHHHHHHTSHHHHHHHHHH-T-CCCBSBT
T ss_pred ---HHHHHHHHHhCHHHHHHHHHh-C-CCCCchH
Confidence 999999999999999998764 3 4466653
No 65
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=99.82 E-value=1.7e-19 Score=195.89 Aligned_cols=247 Identities=17% Similarity=0.152 Sum_probs=168.5
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
+++|+||.+++. ..++++++|++++||+|+++.. ..++++ .+|.+..+..++..++++|+|+||++.
T Consensus 4 ~~tLtvw~~~~~~~~~~~~~i~~Fek~~gI~V~~~~~~~~~~kl~~~~asg~-~PDV~~~~~~~~~~~~~~G~l~~L~~~ 82 (658)
T 3f5f_A 4 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPD 82 (658)
T ss_dssp TTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTC-SCSEEEEEHHHHHHHHHTTCBCCCCCC
T ss_pred CcEEEEeeCCCCchHHHHHHHHHHHhccCcEEEEEeCccHHHHHHHHHhCCC-CCcEEEECcHhHHHHHHCCCEecCCcc
Confidence 457888865443 3468999999999999999721 011222 244444567789999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--cc--cCceeec
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--EL--AGRISMV 278 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~l--kgkI~~~ 278 (439)
. +..+++.+.. ++. ..+| |++||+|+..++.+++|||++|++ +|+||+||++. ++ +|...+.
T Consensus 83 ~--~~~~~~~~~~---~~~---~~~d--Gk~YglP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~ 148 (658)
T 3f5f_A 83 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 148 (658)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHTTTCEEEC
T ss_pred h--hhHhhcCHHH---HHH---hEEC--CEEEEEecccCeEEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCCeEE
Confidence 2 3334444432 221 2344 999999999999999999999995 89999999986 33 3444332
Q ss_pred --c-ChhHH---HH-hCC---------H---------H---HHHHHHHHHhhhh---cccCchHHHHHhhcCCeEEEEEc
Q 044097 279 --N-SPREV---IV-AGG---------K---------I---AVQQNLALLANQV---RLFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 279 --~-~~~~~---~~-~~G---------~---------d---~~~e~L~~l~~~v---~~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
. +.... +. .+| . + .+.+.+.++.... ...+.++..+.|.+|+++|.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 228 (658)
T 3f5f_A 149 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 228 (658)
T ss_dssp CCSSSHHHHHHHHHHTTCEESCCCCSSSEEECEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEEC
T ss_pred eecCchHHHHHHHHhcCCeeeecCCCcccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCchHHHHHHHCCCEEEEEec
Confidence 1 11111 11 111 0 2 3445555554331 11223456789999999999998
Q ss_pred cccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
++.+..+.+.+.+++++ +|. .| ...++.+++|+++++|++ +|++||+ |++|+|.|..+.+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------------aA~~Fl~~~l~s~e~q~~~~~~ 296 (658)
T 3f5f_A 229 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (658)
T ss_dssp GGGHHHHHHTTCCEEEECCCBBTTBCCCCEEEEEEEEEBTTCTTHH------------HHHHHHHHTTSSHHHHHHHHHH
T ss_pred hhhhHHHHhcCCCEEEEECCCCCCCCCccccCceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHhc
Confidence 88887776666678875 574 22 245667899999999999 9999998 99999999999865
Q ss_pred cCCCCCCCc
Q 044097 401 VIPGASPSA 409 (439)
Q Consensus 401 ~~g~~~P~~ 409 (439)
.++..|..
T Consensus 297 -~~~~~p~~ 304 (658)
T 3f5f_A 297 -KPLGAVAL 304 (658)
T ss_dssp -SCCSEESB
T ss_pred -CCCCCCch
Confidence 45555654
No 66
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=99.82 E-value=1.9e-19 Score=192.75 Aligned_cols=246 Identities=17% Similarity=0.158 Sum_probs=166.9
Q ss_pred eeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCcccccccc
Q 044097 136 VPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 136 ~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~ 203 (439)
++|++|.+++. ..++++++|++++||+|+++.. ..+++ +.+|.+..+..++..++++|+|+||++..
T Consensus 5 ~tLtvw~~~~~~~~~~~~~i~~Fek~~gIkV~~~~~~~~~~kl~~~~asG-~~PDV~~~~~~~~~~~~~~G~l~pL~~~~ 83 (568)
T 3h4z_A 5 GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPAA 83 (568)
T ss_dssp TSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHGGGT-CSCSEEEEEHHHHHHHHHHTCBCCCCCCH
T ss_pred CEEEEEecCCcchHHHHHHHHHHHhccCcEEEEEeCCcHHHHHHHHHHcC-CCCeEEEECcHhHHHHHHCCCEEeCCcch
Confidence 47888865443 3468999999999999999721 01122 22434445667889999999999999752
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec-
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV- 278 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~- 278 (439)
+..+++.+.. ++. ..+| |++||+|+..++.+++|||++|++ +|+||+||++. +++ |+..+.
T Consensus 84 --~~~~~~~~~~---~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~kl~~~g~~~~~~ 149 (568)
T 3h4z_A 84 --AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMF 149 (568)
T ss_dssp --HHHTTBCTHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHHHHHHHTTTCEEECC
T ss_pred --hhhhhcCHHH---Hhh---eEEC--CEEEEEEeccCceEEEEEhHHhhC----CCCCHHHHHHHHHHHHhCCCceEEE
Confidence 3334444432 221 2344 999999999999999999999995 89999999986 343 443332
Q ss_pred --cChhHH---HH-hCC------------------HH---HHHHHHHHHhhhh---cccCchHHHHHhhcCCeEEEEEcc
Q 044097 279 --NSPREV---IV-AGG------------------KI---AVQQNLALLANQV---RLFDSTHYLKAFGIGDVWVAVGWS 328 (439)
Q Consensus 279 --~~~~~~---~~-~~G------------------~d---~~~e~L~~l~~~v---~~~~~~~~~~~f~~Ge~~~~i~ws 328 (439)
...... +. .+| .+ ++.+.+.++.... ...+.++..+.|.+|+++|.+.++
T Consensus 150 ~~~~~~~~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~l~~~G~~~~~~~~~~~~~~f~~Gk~am~~~g~ 229 (568)
T 3h4z_A 150 NLQEPYFTWPLIAADGGYAFKYAAGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGP 229 (568)
T ss_dssp CCSSHHHHHHHHHHTTCEEEEECSSCEEEEEEESSSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTSEEEEEECG
T ss_pred ecCchHHHHHHHHHcCCceeecCCCccccCccccCCHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHcCCeEEEEECh
Confidence 111111 11 111 02 3444555554321 112234567899999999999998
Q ss_pred ccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhhc
Q 044097 329 SDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQEV 401 (439)
Q Consensus 329 ~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~~ 401 (439)
..+..+.+.+.++++. +|. +| ...++.+++|+++++|++ +|++||+ |++|+|.|..+++.
T Consensus 230 w~~~~~~~~~~~~~~~~~P~~~g~~~~~~~g~~~~~I~~~skn~e------------aA~~Fl~~fl~s~e~q~~~~~~- 296 (568)
T 3h4z_A 230 WAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD- 296 (568)
T ss_dssp GGHHHHHTSSCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTSSHHHHHHHHHH-
T ss_pred hHHHHHHhcCCCEEEEECCCCCCCCccceecceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHHh-
Confidence 8877766656677775 574 22 245667899999999999 9999998 99999999999865
Q ss_pred CCCCCCCc
Q 044097 402 IPGASPSA 409 (439)
Q Consensus 402 ~g~~~P~~ 409 (439)
.++..|..
T Consensus 297 ~~~~~p~~ 304 (568)
T 3h4z_A 297 KPLGAVAL 304 (568)
T ss_dssp SCCSEESB
T ss_pred CCCCCCcc
Confidence 45556654
No 67
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=99.81 E-value=4.1e-19 Score=180.22 Aligned_cols=252 Identities=13% Similarity=0.121 Sum_probs=159.3
Q ss_pred ceeEEEEeCCCC----ccHHHHHHHHhhc-CCeEEEEEeeeccc----------ccccceEecCchhHHHHHHCCC-ccc
Q 044097 135 TVPLRVVSLQNS----VPQSWVKDFMRSQ-GKRLKFQMNLCASI----------DGIVNNLSTPFNKLSFAIKKRF-IEP 198 (439)
Q Consensus 135 ~~~L~v~~w~~~----~~~~li~~Fek~~-GI~V~~~~~~~~s~----------~~~~~dv~~~~~~~~~~i~~Gl-l~p 198 (439)
.++|++..|++. ..++++++|++++ ||+|+++....+.. ...+|.+.....++..++++|. |.|
T Consensus 5 ~~~l~i~~W~~~~~~~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~kl~~~~~~g~~PDv~~~~~~~~~~~~~~g~~l~~ 84 (408)
T 2uvj_A 5 EVNLRMSWWGGNGRHQVTLKALEEFHKQHPNINVKAEYTGWDGHLSRLTTQIAGGTEPDVMQTNWNWLPIFSKDGTGFYN 84 (408)
T ss_dssp CEEEEEEEECCHHHHHHHHHHHHHHHHHCTTEEEEEEEECSTTHHHHHHHHHHHTCCCSEEEECGGGHHHHCTTSCSBCC
T ss_pred ceEEEEEEECCcchHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHHHHhCCCCCcEEEechHHHHHHHhCCCceec
Confidence 457888888763 2357999999996 99999873221110 1224344456778999999995 999
Q ss_pred ccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc----
Q 044097 199 IAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA---- 272 (439)
Q Consensus 199 l~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk---- 272 (439)
|++.. +. .++++..+..++. ..+| |++||+|+..++.+|+|||++|+++|+++|+||+||.+. +++
T Consensus 85 L~~~~--~~-~~~~~~~~~~~~~---~~~d--Gk~y~vP~~~~~~~l~YNkdl~~~aGl~~P~Twdel~~~a~~l~~~~g 156 (408)
T 2uvj_A 85 LFSVK--EQ-LDLAQFDPKELQQ---TTVN--GKLNGIPISVTARIFYFNDATWAKAGLEYPKTWDELLAAGKVFKEKLG 156 (408)
T ss_dssp GGGGT--TT-SCGGGSCHHHHHT---TEET--TEECCEEEEEEEEEEEEEHHHHHHHTCCCCSSHHHHHHHHHHHHHHTC
T ss_pred chhhc--cc-cccccCCHHHHhc---cEEC--CEEEEeeccccceEEEEcHHHHHHcCCCCCCCHHHHHHHHHHHHhhcC
Confidence 98752 11 1233333333332 2354 999999999999999999999999999999999999875 443
Q ss_pred -CceeeccChhH-------HH-H-hCC-------------HHH---HHHHHHHHhhhhcccCc---------h--HHHHH
Q 044097 273 -GRISMVNSPRE-------VI-V-AGG-------------KIA---VQQNLALLANQVRLFDS---------T--HYLKA 315 (439)
Q Consensus 273 -gkI~~~~~~~~-------~~-~-~~G-------------~d~---~~e~L~~l~~~v~~~~~---------~--~~~~~ 315 (439)
|.+++...... .+ . .+| .+. +.+.+.+|... ..+.. . .....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 2uvj_A 157 DQYYPVVLEHQDTLALIRSYMTQKYNIPTIDEANKKFAYSPEQWVEFFTMYKTMVDN-HVMPSTKYYASFGKSNMYEMKP 235 (408)
T ss_dssp TTCBSCCCCHHHHHHHHHHHHHHHHCCCSEETTTTEECSCHHHHHHHHHHHHHHHHT-TSSCCHHHHHTTCSSCGGGSHH
T ss_pred CCeeeeeccccchHHHHHHHHHHhcCCCcccCCCCeeccChHHHHHHHHHHHHHHHC-CCCCChHHhhhccccccccCCc
Confidence 23333222111 11 1 121 123 33444444432 11111 1 13467
Q ss_pred hhcCCeEEEEEccccHHHHHHc---CCCeeEE-ccC-CCc---e---eeeeEEEEecCCCCcccccCCCCCCCHHHHHHH
Q 044097 316 FGIGDVWVAVGWSSDVLPAVKR---MSNVAVV-VPK-SGA---S---LWADLWAIPAASRLETKQIGGQVRGPSPLIHQW 384 (439)
Q Consensus 316 f~~Ge~~~~i~ws~~~~~~~~~---~~~v~~~-vP~-eG~---~---~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~F 384 (439)
|.+|+++|.+.|+..+..+... ..++++. +|. +|. . .....++|+++++|++ +|++|
T Consensus 236 f~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~i~~~s~~~e------------~A~~f 303 (408)
T 2uvj_A 236 WINGEWAGTYMWNSTITKYSDNLTKPAKLVLGPYPMLPGAKDAGLFFKPAQMLSIGKSTKHPQ------------ESAML 303 (408)
T ss_dssp HHTTSBCEEEEEGGGTHHHHTTSCTTCCEEECCCCCCTTCSCCCCCEEEEEEEEEBTTCSCHH------------HHHHH
T ss_pred eeccceeEEEeecchHHHhhccccCCCceEEEeCCcCCCCCCCceeeccceEEEEECCCCCHH------------HHHHH
Confidence 9999999999888766554432 2356664 664 221 1 1246799999999999 99999
Q ss_pred HHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 385 IEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 385 I~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
|+||++++.+..+... .++ .|..
T Consensus 304 l~~l~s~~~~~~~~~~-~~~-~P~~ 326 (408)
T 2uvj_A 304 INFLLNSKEGVEALGL-ERG-VPLS 326 (408)
T ss_dssp HHHHHTSHHHHHHHTT-TTS-SCCS
T ss_pred HHHHcCCHHHHHHHhc-CCC-CCCC
Confidence 9999986554444333 344 5654
No 68
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.80 E-value=7.3e-19 Score=189.88 Aligned_cols=238 Identities=18% Similarity=0.187 Sum_probs=156.7
Q ss_pred eeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCcccccccc
Q 044097 136 VPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 136 ~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~ 203 (439)
++|+|+..++. ..++++++|++++||+|+++.. ..++++ .+|.+.....++..|+++|+|+||++..
T Consensus 5 ~~l~vw~~~~~~~~~~~~~~~~f~~~~~i~V~~~~~~~~~~kl~~~~~~g~-~PDv~~~~~~~~~~~~~~g~l~~l~~~~ 83 (694)
T 3dm0_A 5 GKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGD-GPDIIFWAHDRFGGYAQSGLLAEITPAA 83 (694)
T ss_dssp TSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTTC-SCSEEEEEGGGHHHHHHTTCBCCCCCCH
T ss_pred ceEEEEECCCcchHHHHHHHHHhhhhhCCEEEEEECccHHHHHHHHhhCCC-CCcEEEECchhHhHHhhCCCcccCCchh
Confidence 46777765543 2468999999999999998721 011222 2444456778999999999999998752
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceeec-
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISMV- 278 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~~- 278 (439)
...+++ .+..++. ..+| |++||+|+..++.+|+|||++|++ +|+||+||.+. +++ |+..+.
T Consensus 84 --~~~~~~---~~~~~~~---~~~~--Gk~ygvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~a~~l~~~g~~~~~~ 149 (694)
T 3dm0_A 84 --AFQDKL---YPFTWDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALMF 149 (694)
T ss_dssp --HHHHHB---CHHHHHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBGGGHHHHHHHHHHTTCEEECC
T ss_pred --hhhhhc---Chhhhhe---EEEC--CEEEEEEEEeeeeEEEEchHHccc----CCCCHHHHHHHHHHhhhCCcceeEe
Confidence 111222 2322322 3455 999999999999999999999986 89999999764 443 443322
Q ss_pred --cChhHH---H-HhCC--------H----------HH---HHHHHHHHhhhhc---ccCchHHHHHhhcCCeEEEEEcc
Q 044097 279 --NSPREV---I-VAGG--------K----------IA---VQQNLALLANQVR---LFDSTHYLKAFGIGDVWVAVGWS 328 (439)
Q Consensus 279 --~~~~~~---~-~~~G--------~----------d~---~~e~L~~l~~~v~---~~~~~~~~~~f~~Ge~~~~i~ws 328 (439)
..+... + ..+| . .+ +.+++.++...-. ....+.....|.+|+++|.+.++
T Consensus 150 ~~~~~~~~~~~~~~~gg~~~~~~~g~~~~~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~f~~G~~am~~~g~ 229 (694)
T 3dm0_A 150 NLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGP 229 (694)
T ss_dssp CCSSHHHHHHHHHHTTCEEEEEETTEEEEEEEETTSHHHHHHHHHHHHHHHTTSSCTTCCHHHHHHHHHTTCEEEEEECG
T ss_pred ccCcHHHHHHHHHhCCceEEecCCCcccccccCCCCHHHHHHHHHHHHHHHcCCCCCCCChhhHHHHHhCCCeeEEEcCc
Confidence 111111 1 1111 0 12 3344444432211 11123445789999999999877
Q ss_pred ccHHHHHHcCCCeeEE-ccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 329 SDVLPAVKRMSNVAVV-VPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 329 ~~~~~~~~~~~~v~~~-vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
..+..+.+...++++. +|. .| ...++..++|+++++|++ +|++||+ |++++|.+..+.+.
T Consensus 230 w~~~~~~~~~~~~gv~~~P~~~g~~~~~~~g~~~~~i~~~s~~~~------------~A~~f~~~~~~~~~~~~~~~~~ 296 (694)
T 3dm0_A 230 WAWSNIDTSAVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 296 (694)
T ss_dssp GGHHHHHHTTCCEEEECCCEETTEECCCEEEEEEEEEBTTCSCHH------------HHHHHHHHTTTSHHHHHHHHHH
T ss_pred cchhhHhhcCCcceeecCCCCCCCCCCceeeeEEEEEEcCCCCHH------------HHHHHHHHHhcCHHHHHHHHhc
Confidence 7766665555667764 563 22 334567889999999999 9999996 89999999988765
No 69
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=99.79 E-value=8.4e-19 Score=177.14 Aligned_cols=254 Identities=13% Similarity=0.094 Sum_probs=154.8
Q ss_pred eEEEEe-CCCC---ccHHHHHHHHhhc-CCeEEEEEeeeccc------------ccccceE-ecCchhHHHHHHCCCccc
Q 044097 137 PLRVVS-LQNS---VPQSWVKDFMRSQ-GKRLKFQMNLCASI------------DGIVNNL-STPFNKLSFAIKKRFIEP 198 (439)
Q Consensus 137 ~L~v~~-w~~~---~~~~li~~Fek~~-GI~V~~~~~~~~s~------------~~~~~dv-~~~~~~~~~~i~~Gll~p 198 (439)
++++|. |++. ..++++++|++++ ||+|+++. ..+. .+..+|| .....++..++++|+|.|
T Consensus 7 TItfW~~~~g~~~~~~~~~i~~F~~~~p~i~V~~~~--~~~~~~~~~~~~aa~~sg~~PDv~~~~~~~~~~~~~~g~l~~ 84 (419)
T 4aq4_A 7 TIPFWHSMEGELGKEVDSLAQRFNAENPDYKIVPTY--KGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKP 84 (419)
T ss_dssp EEEEEECCCTHHHHHHHHHHHHHHHHCTTEEEEEEE--CSSHHHHHHHHHHHHHTTCCCSEEEEEGGGHHHHHTCTTEEC
T ss_pred EEEEcCCCCchHHHHHHHHHHHHHHHCcCeEEEEEe--CCCHHHHHHHHHHHHhcCCCCeEEEECchhHHHHHHCCCccc
Confidence 556553 4443 2367999999997 99999872 2111 1113354 456788999999999999
Q ss_pred ccccccchhhcc--cchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCC---CCCCCcccccCc--cc
Q 044097 199 IAEAEDQDWFKR--LSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNL---APIEDWKDPWWP--EL 271 (439)
Q Consensus 199 l~~~~~~~~~~~--i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl---~~P~TW~DL~dp--~l 271 (439)
|++.. .+.-.. ..+..+.... .....+ +|++||+|+..++.+|+|||++|+++|+ ++|+||+||.+. ++
T Consensus 85 l~d~~-~~~~~~~~~~~~~~~~~~-~~~~~~--dGk~y~vP~~~~~~~l~Ynkdlf~~aGl~~~~~p~Twde~~~~a~~~ 160 (419)
T 4aq4_A 85 VYDVF-KEAGIQFDESQFVPTVSG-YYSDSK--TGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKL 160 (419)
T ss_dssp HHHHH-HHHTCCCCGGGBCHHHHH-HTBCTT--TCCBSSEEEEEECEEEEEEHHHHHHTTCCTTCCCSBHHHHHHHHHHH
T ss_pred cHHHH-hhcccccchhhhhHHHHH-HhccCc--CCEEEeccccccceEEEEEhHHHHHcCCCCCCCCCCHHHHHHHHHHH
Confidence 98652 110011 1111221111 111223 5999999999999999999999999998 468999999875 33
Q ss_pred c--Cc-eeeccC-hh----HHH-Hh---------------CCH-----HH---HHHHHHHHhhhh--c-ccCchHHHHHh
Q 044097 272 A--GR-ISMVNS-PR----EVI-VA---------------GGK-----IA---VQQNLALLANQV--R-LFDSTHYLKAF 316 (439)
Q Consensus 272 k--gk-I~~~~~-~~----~~~-~~---------------~G~-----d~---~~e~L~~l~~~v--~-~~~~~~~~~~f 316 (439)
+ |. ..+... .. ..+ .. .|. +. +.+.+.++...- . ....++..+.|
T Consensus 161 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f 240 (419)
T 4aq4_A 161 KASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKF 240 (419)
T ss_dssp HHTTCSEEEEESSHHHHHTHHHHHHTTCCSBHHHHTTTCTTCCBCCCSHHHHHHHHHHHHHHHHTSBCCCCSSSHHHHHH
T ss_pred hccccCCCcccccCcccchhhhhhhccccccccccccccCCCeeeeccHHHHHHHHHHHHHHhcCCCCcccchhhHHHhh
Confidence 2 21 111111 11 011 00 010 23 344444444321 1 11234567889
Q ss_pred hcCCeEEEEEccccHHHHHHc-CCCeeEE-ccC--C--C----ceeeeeEEEEecC--CCCcccccCCCCCCCHHHHHHH
Q 044097 317 GIGDVWVAVGWSSDVLPAVKR-MSNVAVV-VPK--S--G----ASLWADLWAIPAA--SRLETKQIGGQVRGPSPLIHQW 384 (439)
Q Consensus 317 ~~Ge~~~~i~ws~~~~~~~~~-~~~v~~~-vP~--e--G----~~~~~~~~aI~k~--a~~~e~~~~~~~~~~~~aA~~F 384 (439)
.+|+++|.+.++..+....+. ..++++. +|. . + ....+..++|+++ ++|++ +|++|
T Consensus 241 ~~G~~am~~~g~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~------------aA~~f 308 (419)
T 4aq4_A 241 YNGDCAMTTASSGSLANIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYT------------GVAKF 308 (419)
T ss_dssp HTTSEEEEEEEGGGHHHHHHHCCSCEEEEECCBCTTCTTCCCCCCCEEEEEEEESSCCHHHHH------------HHHHH
T ss_pred hcCceEEEEeChHHHHHHHhhCCCceEEEeccCCCCCCCCCcceeecCceEEEEecchhhhHH------------HHHHH
Confidence 999999999887776655543 3456653 552 1 1 2234456777754 35777 99999
Q ss_pred HHHHhcHHhhHHHHhhcCCCCCCCcc
Q 044097 385 IEFCLQTARALPFKQEVIPGASPSAL 410 (439)
Q Consensus 385 I~fllS~e~q~~~a~~~~g~~~P~~~ 410 (439)
|+||+|+|.|..+++. .|+ .|...
T Consensus 309 l~~l~s~e~~~~~~~~-~g~-~P~~~ 332 (419)
T 4aq4_A 309 LDFLAKPENAAEWHQK-TGY-LPITK 332 (419)
T ss_dssp HHHHTSHHHHHHHHHH-HCC-BCCBH
T ss_pred HHHhCCHHHHHHHHHh-cCC-CCCcH
Confidence 9999999999999876 344 66653
No 70
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=99.78 E-value=4.2e-18 Score=185.37 Aligned_cols=120 Identities=13% Similarity=0.127 Sum_probs=86.5
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|+++.+++. ..++++++|++++||+|+++.. ..+++ +.+|.+..+..++..++++|+|+||+..
T Consensus 40 ~~tLtvw~~~~~~~~~~~~~i~~Fek~~gIkV~~~~~~~~~~kl~~~~asG-~~PDV~~~~~~~~~~~~~~G~l~pLd~~ 118 (661)
T 3osq_A 40 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 118 (661)
T ss_dssp TTSEEEECCTTSCHHHHHHHHHHHHHHHCCCEEEECCTTHHHHHHHHHHTT-CSCSEEEEEGGGHHHHHHTTCBCCCCCC
T ss_pred CCEEEEEeCCCcchHHHHHHHHHHHhhhCcEEEEEeCCCHHHHHHHHHhcC-CCCeEEEECcHHHHHHHHCCCEEeCCcc
Confidence 457888865543 3468999999999999999721 01112 2244444567789999999999999974
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP 269 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp 269 (439)
. ....++.+.. ++. ..+| |++||+|+..++.+++||+++|++ +|+||+||++.
T Consensus 119 ~--~~~~~~~~~~---~~~---~~~d--Gk~YgvP~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 171 (661)
T 3osq_A 119 K--AFQDKLYPFT---WDA---VRYN--GKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPAL 171 (661)
T ss_dssp H--HHHTTBCHHH---HHH---TEET--TEECSEEEEEECCEEEEETTTCSS----CCSBSTTHHHH
T ss_pred h--hhhhhcCHHH---Hhh---ceEC--CEEEEEEEecCeEEEEEEhHHhcC----CCCCHHHHHHH
Confidence 2 2223344332 221 2344 999999999999999999999995 89999999985
No 71
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=99.77 E-value=1.9e-18 Score=191.84 Aligned_cols=239 Identities=18% Similarity=0.147 Sum_probs=157.0
Q ss_pred ceeEEEEeCCCC---ccHHHHHHHHhhcCCeEEEEEe---------eecccccccceEecCchhHHHHHHCCCccccccc
Q 044097 135 TVPLRVVSLQNS---VPQSWVKDFMRSQGKRLKFQMN---------LCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEA 202 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~~~li~~Fek~~GI~V~~~~~---------~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~ 202 (439)
.++|++|.|++. ..++++++|++++||+|+++.. ..+++ ..+|.+.....++..++++|+|+||++.
T Consensus 8 ~~tLtvw~~~~~~~~~~~~~i~~Fek~~gIkV~~~~~~~~~~kl~~~~asG-~~PDVv~~~~~~~~~~~~~G~L~~L~~~ 86 (805)
T 2nvu_B 8 EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATG-DGPDIIFWAHDRFGGYAQSGLLAEITPD 86 (805)
T ss_dssp TTSEEEECCTTSCSHHHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHHHSS-CSCSEEEEEHHHHHHHHHTTCBCCCCCC
T ss_pred CceEEEEeCCCchHHHHHHHHHHHHhhhCCEEEEEeCccHHHHHHHHHhCC-CCCeEEEECchhHHHHHHCCceecCCcc
Confidence 457888888764 2468999999999999999721 01112 2243334566788999999999999975
Q ss_pred ccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCc--ccc--Cceee-
Q 044097 203 EDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA--GRISM- 277 (439)
Q Consensus 203 ~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk--gkI~~- 277 (439)
. .+.+++.+.. .+. ..+ +|++||+|+.+++.+++|||++|++ +|+||+||++. +++ |+..+
T Consensus 87 ~--~~~~~~~~~~---~~~---~~~--dGk~YgvP~~~~~~~l~YNkdlf~~----~P~TWdEl~~~a~klk~~g~~~~~ 152 (805)
T 2nvu_B 87 K--AFQDKLYPFT---WDA---VRY--NGKLIAYPIAVEALSLIYNKDLLPN----PPKTWEEIPALDKELKAKGKSALM 152 (805)
T ss_dssp H--HHHTSBCTTH---HHH---TEE--TTEECEEEEEEEECEEEECTTTCSS----CCSBSTTHHHHHHHHHTTTCEEEC
T ss_pred h--hhHhhcCHHH---Hhh---eEE--CCEEEEEecccceeEEEEEhHhhcC----CCcCHHHHHHHHHHHHhcCCCceE
Confidence 2 2223333221 111 224 4999999999999999999999985 89999999763 554 44332
Q ss_pred -cc-ChhHHH----HhC--------CH----------H---HHHHHHHHHhhhhc---ccCchHHHHHhhcCCeEEEEEc
Q 044097 278 -VN-SPREVI----VAG--------GK----------I---AVQQNLALLANQVR---LFDSTHYLKAFGIGDVWVAVGW 327 (439)
Q Consensus 278 -~~-~~~~~~----~~~--------G~----------d---~~~e~L~~l~~~v~---~~~~~~~~~~f~~Ge~~~~i~w 327 (439)
.. +....+ ..+ |. + ++.+++.++..... ....++..+.|.+|+++|.+.+
T Consensus 153 ~~~~~~~~~~~~~~~~Gg~~~~~~~g~~~~~~~~~~~~~~~~al~~~~~l~~~g~~~~~~~~~~~~~~f~~Gk~am~~~g 232 (805)
T 2nvu_B 153 FNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTING 232 (805)
T ss_dssp CCCSSHHHHHHHHHHTTCEEEEECSSSEEEEEEETSSHHHHHHHHHHHHHHHSSSCCTTCCHHHHHHHHTTTCEEEEEEC
T ss_pred eecCchHHHHHHHHhcCCceeeccCCcccccccccCCHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHCCCEEEEEeC
Confidence 11 111111 111 21 1 23445555543311 1122346688999999999987
Q ss_pred cccHHHHHHcCCCeeE-EccC-CC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH-HHhcHHhhHHHHhh
Q 044097 328 SSDVLPAVKRMSNVAV-VVPK-SG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE-FCLQTARALPFKQE 400 (439)
Q Consensus 328 s~~~~~~~~~~~~v~~-~vP~-eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~-fllS~e~q~~~a~~ 400 (439)
++.+..+.+.+.++++ .+|. +| ...++.+++|+++++|++ +|++||+ |++|+|.|..+.+.
T Consensus 233 ~w~~~~~~~~~~~~g~~~~P~~~g~~~~~~~g~~~~~I~~~sk~~e------------aA~~Fi~~fl~s~e~q~~~~~~ 300 (805)
T 2nvu_B 233 PWAWSNIDTSKVNYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKE------------LAKEFLENYLLTDEGLEAVNKD 300 (805)
T ss_dssp TTTTTTTTTTTCCCCCBCCCBCSSSCCCCCEEEEEEEEBSSCSTTH------------HHHHHHHTTTSSHHHHHHHHTT
T ss_pred hhhHHHHhhcCCCeEEEECCCCCCCCccceecceEEEEECCCCCHH------------HHHHHHHHHhcCHHHHHHHHhc
Confidence 6554333333345665 3674 23 235677899999999999 9999995 99999999998754
No 72
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=99.76 E-value=1.9e-18 Score=176.19 Aligned_cols=256 Identities=11% Similarity=0.094 Sum_probs=152.0
Q ss_pred ceeEEEEeCCCC----ccHHHHHHHHhhc-CCeEEEEEeeec-cc---------ccccceEe--cCchhHHHHHHCCCcc
Q 044097 135 TVPLRVVSLQNS----VPQSWVKDFMRSQ-GKRLKFQMNLCA-SI---------DGIVNNLS--TPFNKLSFAIKKRFIE 197 (439)
Q Consensus 135 ~~~L~v~~w~~~----~~~~li~~Fek~~-GI~V~~~~~~~~-s~---------~~~~~dv~--~~~~~~~~~i~~Gll~ 197 (439)
+++|+++.+.+. +.++++++|++++ ||+|+++..... .. .+..+||+ ....++..++++|+|.
T Consensus 29 k~~it~W~~~~~~~~~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~kl~~~~asg~~PDv~~~~~~~~~~~~~~~g~l~ 108 (433)
T 4gqo_A 29 KTKVTFWAAPNPTQVKYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSAIASKTAPTMSENINRSFAAQLADSKAIV 108 (433)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHCTTEEEEEEECCCSSSHHHHHHHHHHHTCCCSEEEEECHHHHHHHHHTTSBC
T ss_pred CEEEEEEeCCCchHHHHHHHHHHHHHHHCcCeEEEEEEcCCcHHHHHHHHHHHHCCCCCeEEEEcCHHHHHHHHHCCCEE
Confidence 456777765432 3468999999996 999999732111 10 01134554 3567899999999999
Q ss_pred cccccccchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCC-CCCCcccccCc--ccc--
Q 044097 198 PIAEAEDQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLA-PIEDWKDPWWP--ELA-- 272 (439)
Q Consensus 198 pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~-~P~TW~DL~dp--~lk-- 272 (439)
||++....+... ..+.++..+... ...||++||+|+..++.+|+|||++|+++|++ +|+||+||.+. +++
T Consensus 109 ~L~~~~~~~~~~-~~~~~~~~~~~~----~~~dGk~y~~P~~~~~~~l~Ynkdlf~~aGl~~pP~Twde~~~~~~~l~~~ 183 (433)
T 4gqo_A 109 PLNDVKGLDDVV-KERNMSETMDSW----KFSDGNQYVLPVYSNPILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAK 183 (433)
T ss_dssp CGGGSTTHHHHH-HHTTCHHHHHHT----CCTTSCCCCEEEEEEECEEEECHHHHHHTTCSSCCCBHHHHHHHHHHHHHH
T ss_pred EChhhhcccchh-hhhhhHHHHHHh----cccCCEEEEEeccCceEEEEEehhhHHHcCCCCCCCCHHHHHHHHHHHHHh
Confidence 999752111110 111122222211 22359999999999999999999999999985 69999999874 332
Q ss_pred --Cceeecc-------Chh---HHH---H--hC-------C-----HHHHH---HHHHHHhhhhcccCchHHHHHhhcCC
Q 044097 273 --GRISMVN-------SPR---EVI---V--AG-------G-----KIAVQ---QNLALLANQVRLFDSTHYLKAFGIGD 320 (439)
Q Consensus 273 --gkI~~~~-------~~~---~~~---~--~~-------G-----~d~~~---e~L~~l~~~v~~~~~~~~~~~f~~Ge 320 (439)
+.+.+.. ... ..+ . .+ | .+.+. +++.+|...- .+..+...+.|.+|+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~al~~~~~l~~~g-~~~~~~~~~~f~~G~ 262 (433)
T 4gqo_A 184 YPDKVLWAKGDLSDPTAWMRWFDFFPLYDAASKGNAFVEDGKLVADDKAGTELLTFMSELQKNK-LLLASKATDPFETGT 262 (433)
T ss_dssp CTTCEEEECGGGGCCCGGGGGGTHHHHHHHHTTSCCSEETTEECCCHHHHHHHHHHHHHHHHTT-CEECSCCSSHHHHTS
T ss_pred CCCCceeccccccccchhhhhhHHHHHHhhhccccccccCCceeecCHHHHHHHHHHHHHHHhc-CCChhhHHHHHhCCc
Confidence 1222110 000 111 1 11 1 12333 4444444331 222334456899999
Q ss_pred eEEEEEccccHHHHHHcC------CCeeEE---ccC--CC-----ceeeeeEEEE--ecCCCCcccccCCCCCCCHHHHH
Q 044097 321 VWVAVGWSSDVLPAVKRM------SNVAVV---VPK--SG-----ASLWADLWAI--PAASRLETKQIGGQVRGPSPLIH 382 (439)
Q Consensus 321 ~~~~i~ws~~~~~~~~~~------~~v~~~---vP~--eG-----~~~~~~~~aI--~k~a~~~e~~~~~~~~~~~~aA~ 382 (439)
++|.+.++..+..+.... .++.+. +|. .+ ...+..+++| ++.++|++ +|+
T Consensus 263 ~am~~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~i~~~~~sk~~e------------aA~ 330 (433)
T 4gqo_A 263 SIMADNGPWTFPNWDEKFPELKYNENYAITAPLVPDSMVNEENVATYADSKGVVMYAQATDKEKE------------AAM 330 (433)
T ss_dssp EEEEEECTTHHHHHHHHCTTCCBTTTBEEECCCBCGGGTTCSSCCEEEEEEEEEEBTTSCHHHHH------------HHH
T ss_pred eeEEEcchHHHHHHHHhchhhhcccccceeeecCCccccCccccceeccccceEEeecCCchhHH------------HHH
Confidence 999998766655554432 233443 332 11 1223344554 56677888 999
Q ss_pred HHHHHHhcHHhh-HHHHhhcCCCCCCCcc
Q 044097 383 QWIEFCLQTARA-LPFKQEVIPGASPSAL 410 (439)
Q Consensus 383 ~FI~fllS~e~q-~~~a~~~~g~~~P~~~ 410 (439)
+||+||+|+|.| ..+.+. .|+ .|...
T Consensus 331 ~fl~~l~s~e~~~~~~~~~-~g~-~P~~~ 357 (433)
T 4gqo_A 331 DFLKFVYNDDKNDLKFLET-TNL-IPARD 357 (433)
T ss_dssp HHHHHHTTSHHHHHHHHHH-HCC-CBSCS
T ss_pred HHHHHHcCCHHHHHHHHHH-cCC-CCCch
Confidence 999999998865 457664 344 66654
No 73
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=99.67 E-value=1.2e-15 Score=148.70 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=142.5
Q ss_pred cHHHHHHHHh----hcCCeEEEEEeeeccc-------ccccceEe-cCc-hhHHHHHHCCCcccccccccchhhcccchh
Q 044097 148 PQSWVKDFMR----SQGKRLKFQMNLCASI-------DGIVNNLS-TPF-NKLSFAIKKRFIEPIAEAEDQDWFKRLSHK 214 (439)
Q Consensus 148 ~~~li~~Fek----~~GI~V~~~~~~~~s~-------~~~~~dv~-~~~-~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~ 214 (439)
.++++++|++ ++||+|+++....++. .+...||+ .+. .++..+.++|+++|... ..+
T Consensus 17 ~~~~~~~F~~~~~~~~gi~V~v~~~~~~s~~l~~~~~~g~~~Dv~~~~~~~~~~~~~~~g~l~~~~~-------~~~--- 86 (310)
T 1sbp_A 17 YEQYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRIDKNWI-------KRL--- 86 (310)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHHHHHHHHHTTSSCTTGG-------GGS---
T ss_pred HHHHHHHHHHHhhhCCCceEEEEeecCChHHHHHHHhcCCCCCEEEeCcHHHHHHHHhCCCcCcchh-------hcC---
Confidence 4678899976 4799998862112211 11123554 343 68889999999987321 111
Q ss_pred HHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccC---hhH--H----H
Q 044097 215 WKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNS---PRE--V----I 285 (439)
Q Consensus 215 ~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~---~~~--~----~ 285 (439)
+. .++|| +++.+|+||++.. .+|+||+||+++++ +|++.+. ... . +
T Consensus 87 -~~----------------~~~p~-~~~~~l~yn~~~~-----~~p~tw~dL~~~~~--ki~~~~p~~~~~~~~~~~~~~ 141 (310)
T 1sbp_A 87 -PD----------------DSAPY-TSTIVFLVRKGNP-----KQIHDWNDLIKPGV--SVITPNPKSSGGARWNYLAAW 141 (310)
T ss_dssp -HH----------------HHCSE-EBCEEEEEETTCT-----TCCCSGGGGGSTTC--CEECCCTTTCHHHHHHHHHHH
T ss_pred -Cc----------------cCCce-eEEEEEEEeCCCC-----CCCCCHHHHcCccc--eEecCCCcccchhHHHHHHHH
Confidence 10 02455 5678999999973 26999999999876 6776542 111 1 1
Q ss_pred H----hCC--HHHHHHHHHHHhhhhcccCch---HHHHHhhcCCeEEEEEccccHHHHHHc-C-CCeeEEccCCCceeee
Q 044097 286 V----AGG--KIAVQQNLALLANQVRLFDST---HYLKAFGIGDVWVAVGWSSDVLPAVKR-M-SNVAVVVPKSGASLWA 354 (439)
Q Consensus 286 ~----~~G--~d~~~e~L~~l~~~v~~~~~~---~~~~~f~~Ge~~~~i~ws~~~~~~~~~-~-~~v~~~vP~eG~~~~~ 354 (439)
. ..| .+.+.+++.++.++...+..+ ...+.|.+|++.|++.|++......++ + .++++++|++|. .+.
T Consensus 142 ~~~~~~~gg~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~v~P~~g~-~~~ 220 (310)
T 1sbp_A 142 GYALHHNNNDQAKAEDFVKALFKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLATNELGKDKFEIVTPSESI-LAE 220 (310)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTEEECCSSHHHHHHHHHTSCCCSEEEEEHHHHHHHHHTTTTTTEEEECCSEEE-CBC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCcccCCccHHHHHHHHhCCCccEEEeechHHHHHHHhcCCCceEEEccCCce-ecc
Confidence 1 233 346778888888775545432 256778999999999998877655554 4 688988997554 344
Q ss_pred eEEEEecCC----CCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 355 DLWAIPAAS----RLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 355 ~~~aI~k~a----~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
..++|++++ +|++ +|++||+||+|+|.|..+.+ .|+ .|..
T Consensus 221 ~~~~i~~~~~~~s~~~~------------~A~~fi~fl~s~e~q~~~~~--~g~-~p~~ 264 (310)
T 1sbp_A 221 PTVSVVDKVVEKKDTKA------------VAEAYLKYLYSPEGQEIAAK--NFY-RPRD 264 (310)
T ss_dssp CEEEECHHHHHHHTCHH------------HHHHHHHGGGSHHHHHHHHH--TTC-EESC
T ss_pred CCeEEeccccccccCHH------------HHHHHHHHHcChHHHHHHHH--cCC-CCCC
Confidence 578898876 8988 99999999999999998874 356 4443
No 74
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=99.64 E-value=4.7e-16 Score=160.60 Aligned_cols=230 Identities=17% Similarity=0.170 Sum_probs=140.2
Q ss_pred HHHHHHHhhcCCeEEEEEe------------eecccccccceEe-cC--chhHHHHHHCCCcccccccccchhhcccchh
Q 044097 150 SWVKDFMRSQGKRLKFQMN------------LCASIDGIVNNLS-TP--FNKLSFAIKKRFIEPIAEAEDQDWFKRLSHK 214 (439)
Q Consensus 150 ~li~~Fek~~GI~V~~~~~------------~~~s~~~~~~dv~-~~--~~~~~~~i~~Gll~pl~~~~~~~~~~~i~~~ 214 (439)
.+.+.+++++||+|+++.. ..+++ + .+||+ .. ..++..++++|+|.||++.. ....+++.+.
T Consensus 30 ~v~k~~~e~~ni~i~~~~~~~~~d~~~Kl~~~lasG-~-~PDi~~~~~~~~~~~~~~~~G~l~dL~d~i-~~~~p~~k~~ 106 (490)
T 3a09_A 30 PVAREVARLTNVKLVGVANRAATNSQEQFNLMMASG-Q-LPDIVGGDNLKDKFIRYGMEGAFIPLNKLI-DQNAPNLKAF 106 (490)
T ss_dssp HHHHHHHHHHSEEEEECSCTTCSCHHHHHHHHHTSS-S-CCSEEEETTCHHHHHHHHHHTSBCCCHHHH-HHHCHHHHHH
T ss_pred HHHHHHHHhhCCEEEEEeCCCCCCHHHHHHHHHHCC-C-cCeEEEECCchHHHHHHHHCCCEEECHHHH-HhhChhHHHH
Confidence 5788889999999997511 11233 2 44555 33 35688899999999998752 1111223222
Q ss_pred H---HHhhhcCCCcccCCCCCEEEeeeec---ceEEEEEeCcccccCCCCCCCCcccccCc--ccc-------C---cee
Q 044097 215 W---KVYLRSNDAGEIDPRGKIWAAPYRW---GTMAIGYKKSKFQNHNLAPIEDWKDPWWP--ELA-------G---RIS 276 (439)
Q Consensus 215 ~---~~~l~~~~~~~~D~dGk~YgvP~~~---~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp--~lk-------g---kI~ 276 (439)
+ +..... ....||++||+|+.. .+.+++|||++|+++|+++|+||+||.+. +++ | .+.
T Consensus 107 ~~~~~~~~~~----~~~~dGkiY~lP~~~~~~~~~~~~ynkd~l~k~Gl~~P~T~de~~~~~~~~k~~~~~~~g~~~~~~ 182 (490)
T 3a09_A 107 FKTHPEVQRA----ITAPDGNIYYLPYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYTVLKAFKEKDPNGNGKADEIP 182 (490)
T ss_dssp HHHCHHHHHH----HBCTTSCBCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHHHHHHHHHSCTTCSSSCCCEE
T ss_pred HhhCHHHHHH----hcccCCeEEEEEeecCCCcceEEEEEHHHHHHcCCCCCCchhHHHHHHHHHHHhcccccCCcceee
Confidence 2 111111 123459999999853 46689999999999999999999999764 222 1 233
Q ss_pred eccC-hhHHHH------h--------------CCH-------HHHHH---HHHHHhhh--h----cccCchHHHHHhhcC
Q 044097 277 MVNS-PREVIV------A--------------GGK-------IAVQQ---NLALLANQ--V----RLFDSTHYLKAFGIG 319 (439)
Q Consensus 277 ~~~~-~~~~~~------~--------------~G~-------d~~~e---~L~~l~~~--v----~~~~~~~~~~~f~~G 319 (439)
+... ....+. . .|. +...+ .+.+|... + ...+.++..+.|.+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~al~~~~~l~~~G~i~~~~~t~~~~~~~~~f~~G 262 (490)
T 3a09_A 183 FINRDPEEVFRLVNFWGARSTGSNTWMDFYVENGKIKHPFAEVAFKDGIKHVAQWYKEGLIDPEIFTRKARSREQTFGNN 262 (490)
T ss_dssp ECCSCTHHHHHGGGGGTCCSCSSSSTTCCEEETTEEECGGGSHHHHHHHHHHHHHHHTTSBCTTTTTCGGGHHHHHHHTT
T ss_pred eeccCCcchhhhhhhhhhhhccccccchhhhccCceeeccCCHHHHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHCC
Confidence 3221 111110 0 011 23334 44444321 1 011234567889999
Q ss_pred CeEEEEEccccHHHHHHc----CCCeeEE---ccC--CCc--------eeeeeEEEEecCCCCcccccCCCCCCCHHHHH
Q 044097 320 DVWVAVGWSSDVLPAVKR----MSNVAVV---VPK--SGA--------SLWADLWAIPAASRLETKQIGGQVRGPSPLIH 382 (439)
Q Consensus 320 e~~~~i~ws~~~~~~~~~----~~~v~~~---vP~--eG~--------~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~ 382 (439)
+++|.++|.......... .+...+. .|. .|. .....+++|+++++|++ +|.
T Consensus 263 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~I~~~sk~~e------------~A~ 330 (490)
T 3a09_A 263 IGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSKGQRWEEDARQIPRPDGWAITATNKNPV------------ETI 330 (490)
T ss_dssp CEEEEEEEHHHHHHHHHHTTTTSTTCCEEEECCCBCTTSCCCBCCCCCSSCSCEEEEBTTCSCHH------------HHH
T ss_pred CEEEEEechHHHHHHHHHHhhcCCCceEEeeccCcCCCCcccCCCccccccceEEEEECCCCCHH------------HHH
Confidence 999998876665444321 2333332 221 121 12345799999999999 999
Q ss_pred HHHHHHhcHHhhHHHH
Q 044097 383 QWIEFCLQTARALPFK 398 (439)
Q Consensus 383 ~FI~fllS~e~q~~~a 398 (439)
+||+||+|+|.|..+.
T Consensus 331 ~fl~~l~s~e~~~l~~ 346 (490)
T 3a09_A 331 KLFDFYFGPKGRELSN 346 (490)
T ss_dssp HHHHHTTSHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHh
Confidence 9999999999998664
No 75
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=99.57 E-value=8.5e-15 Score=153.42 Aligned_cols=244 Identities=16% Similarity=0.168 Sum_probs=141.3
Q ss_pred ceeEEEEeCCCC---cc--HHHHHHHHhhcCCeEEEEEee------------ecccccccceEe--cC-chhHHHHHHCC
Q 044097 135 TVPLRVVSLQNS---VP--QSWVKDFMRSQGKRLKFQMNL------------CASIDGIVNNLS--TP-FNKLSFAIKKR 194 (439)
Q Consensus 135 ~~~L~v~~w~~~---~~--~~li~~Fek~~GI~V~~~~~~------------~~s~~~~~~dv~--~~-~~~~~~~i~~G 194 (439)
.++|+++...+. .. ..+.+.|++++||+|+++... .+++ + .+||+ .. ..++..++++|
T Consensus 10 pvtlt~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~kl~~~~asG-~-~PDi~~~~~~~~~~~~~~~~G 87 (502)
T 3vlv_A 10 PLTLKIHMHFRDKWVWDENWPVAREVARLTNVKLVGVANRAATNSQEQFNLMMASG-Q-LPDIVGGDNLKDKFIRYGMEG 87 (502)
T ss_dssp CEEEEEEEEETTTEECCTTSHHHHHHHHHHSEEEEECSCTTCSCHHHHHHHHHTTT-C-CCSEEEESSCHHHHHHHHHHT
T ss_pred CEEEEEEEeCCCCCCCCcccHHHHHHHHHHCCEEEEEeCCCCCCHHHHHHHHHHcC-C-CCeEEEecCCcHHHHHHHHCC
Confidence 456777653222 11 268899999999999996211 1222 2 34554 34 57889999999
Q ss_pred CcccccccccchhhcccchhH---HHhhhcCCCcccCCCCCEEEeee---ecceEEEEEeCcccccCCCCCCCCcccccC
Q 044097 195 FIEPIAEAEDQDWFKRLSHKW---KVYLRSNDAGEIDPRGKIWAAPY---RWGTMAIGYKKSKFQNHNLAPIEDWKDPWW 268 (439)
Q Consensus 195 ll~pl~~~~~~~~~~~i~~~~---~~~l~~~~~~~~D~dGk~YgvP~---~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d 268 (439)
+|.||++.. ....+++.+.+ +.+... ....||++||+|+ ...+.+++||+++|+++|+++|+||+||.+
T Consensus 88 ~l~~L~d~i-~~~~~~~~~~~~~~p~~~~~----~~~~dGk~Y~lP~~~~~~~~~~~~ynkd~l~~~Gl~~P~T~del~~ 162 (502)
T 3vlv_A 88 AFIPLNKLI-DQNAPNLKAFFKTHPEVQRA----ITAPDGNIYYLPYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYT 162 (502)
T ss_dssp SBCCCHHHH-HHHCHHHHHHHHHCHHHHHH----HBCTTSCBCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHH
T ss_pred CEEEcHHHH-HHhChHHHHHHHHChHHHHh----ccCCCCCEEEeccccCCCcCcceEEeHHHHHHcCCCCCCCHHHHHH
Confidence 999998752 11113343332 222221 1234599999999 457889999999999999999999999986
Q ss_pred c--ccc-------C---ceeeccC-hhHH------HHh--C------------CH-------HHHHHHH---HHHhhh--
Q 044097 269 P--ELA-------G---RISMVNS-PREV------IVA--G------------GK-------IAVQQNL---ALLANQ-- 303 (439)
Q Consensus 269 p--~lk-------g---kI~~~~~-~~~~------~~~--~------------G~-------d~~~e~L---~~l~~~-- 303 (439)
. +++ | .+.+... .... |.. . |. +...+.| .+|...
T Consensus 163 ~~~~~k~~~p~g~G~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~l~~~G~ 242 (502)
T 3vlv_A 163 VLKAFKEKDPNGNGKADEIPFINRDPEEVFRLVNFWGARSTGSNTWMDFYVENGKIKHPFAEVAFKDGIKHVAQWYKEGL 242 (502)
T ss_dssp HHHHHHHSCTTCSSSCCCEEECCSCTTHHHHGGGGGTCCSCSSSSTTCCEEETTEEECGGGSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCcceeeeeccCCchHHHHHHHhCCCCcCCCCcceEEecCCEEEeCCCCHHHHHHHHHHHHHHHCCC
Confidence 4 232 2 2444321 1111 111 0 10 2334444 444321
Q ss_pred h--cccCc-hHHHHHhhcCCeE-EEEEccccHHHH----HHcCCCeeE--Ec-cC--CCc--------eeeeeEEEEecC
Q 044097 304 V--RLFDS-THYLKAFGIGDVW-VAVGWSSDVLPA----VKRMSNVAV--VV-PK--SGA--------SLWADLWAIPAA 362 (439)
Q Consensus 304 v--~~~~~-~~~~~~f~~Ge~~-~~i~ws~~~~~~----~~~~~~v~~--~v-P~--eG~--------~~~~~~~aI~k~ 362 (439)
+ ..+.. .+....|.+|.+. |...|....... .+..+...+ +. |. .|. .....+|+|+++
T Consensus 243 i~~~~~t~~~~~~~~~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~~~~~I~~~ 322 (502)
T 3vlv_A 243 IDPEIFTRKARSREQTFGNNIGGMTHDWFASTALFNDALSKNIPGFKLVPMAPPINSKGQRWEEDARQIPRPDGWAITAT 322 (502)
T ss_dssp BCTTTTTCGGGHHHHHHHTTCEEEEEEEHHHHHTHHHHTTTTSTTCCEEEECCCBCTTSCCCBCCCCCSSCSCEEEEBTT
T ss_pred CChhhhcCChHHHHHHHcCCeEEEEeecccccchhhhhhhhcCCCcceEEecCccCCCCccccccccCCCCCceEEEeCC
Confidence 1 01111 2234455555544 444553332111 122233333 22 22 231 233468999999
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHH
Q 044097 363 SRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPF 397 (439)
Q Consensus 363 a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~ 397 (439)
++|++ +|.+||+||+|+|.|..+
T Consensus 323 sk~~e------------~A~~fl~~l~s~e~~~l~ 345 (502)
T 3vlv_A 323 NKNPV------------ETIKLFDFYFGPKGRELS 345 (502)
T ss_dssp CSCHH------------HHHHHHHHTTSHHHHHHH
T ss_pred CCCHH------------HHHHHHHHhcCHHHHHHH
Confidence 99999 999999999999999865
No 76
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=99.57 E-value=9.1e-15 Score=142.62 Aligned_cols=152 Identities=9% Similarity=0.104 Sum_probs=103.0
Q ss_pred EEeeeecceEEEEEeCcccccCCC-CCCCCccccc-CccccCceeeccChhHHH--------HhCCHHHHHHHHHHHhhh
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNL-APIEDWKDPW-WPELAGRISMVNSPREVI--------VAGGKIAVQQNLALLANQ 303 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl-~~P~TW~DL~-dp~lkgkI~~~~~~~~~~--------~~~G~d~~~e~L~~l~~~ 303 (439)
|.+|+.++..+|+||++.....++ ..|++|.||+ +|+ ++|++.+...... ...+...-.+.+..+..+
T Consensus 83 ~~~~~~~~~~vi~~~~~~~~~~~i~~~p~sw~dll~~p~--~~i~~~~p~~~~~G~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (296)
T 3cg1_A 83 FYVLFATNEIVIAFTDKSRYVEEMKSNPDKWYEILARED--VRFGFSDPNQDPCGYRSLMVIKLADLYYGKEIFKELIEE 160 (296)
T ss_dssp CCEEEEECCEEEEECTTSTTHHHHHHCGGGHHHHHTSTT--CCEEEECTTTCHHHHHHHHHHHHHHHHHTSCHHHHHTTT
T ss_pred cceecccccEEEEEcCCCchhcccCCCCCCHHHHhcCCC--cEEEeCCCCCCchhHHHHHHHHHHHHhcchhHHHHHHhc
Confidence 458899999999999986321111 2579999987 564 6898875332111 111000000234444322
Q ss_pred -----------------------hccc-CchHHHHHhhcCCeEEEEEccccHHHHH------------------HcCCCe
Q 044097 304 -----------------------VRLF-DSTHYLKAFGIGDVWVAVGWSSDVLPAV------------------KRMSNV 341 (439)
Q Consensus 304 -----------------------v~~~-~~~~~~~~f~~Ge~~~~i~ws~~~~~~~------------------~~~~~v 341 (439)
.... ...+..+.+.+|++.+++.|.+.+.... +.+.++
T Consensus 161 ~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~~~~i~~~s~a~~~~~~~~~~p~~~~~~~~~~~~~~~~v 240 (296)
T 3cg1_A 161 NTNIYSNGTQIYAPKEITVNPGKIVIRPKETDLLGLVESGSIDYIFIYKSVAKQHNLSYITLPSEINLGDFSKEKFYGQI 240 (296)
T ss_dssp TBSCEEETTEEEECSSCCBCTTTEEEESSGGGGHHHHHHTSSSEEEEEHHHHHHTTCEEEECCTTTSSCCGGGHHHHTTC
T ss_pred ccccccCccccccccccccccccceecCchHHHHHHHhCCCCCEEEEEhhHHHHcCCCeEecChhhccccccccccccce
Confidence 1111 2345778899999999999988876421 123568
Q ss_pred eEEccCCC----ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHh
Q 044097 342 AVVVPKSG----ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQ 399 (439)
Q Consensus 342 ~~~vP~eG----~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~ 399 (439)
.+++|++| ...+...++|+++++|++ +|++||+||+|+|.|..+.+
T Consensus 241 ~~~~p~~g~~~~~~~~~~~~~i~k~a~~~~------------~A~~Fi~fl~s~e~q~~~~~ 290 (296)
T 3cg1_A 241 SITLGSTGKTIKAKPIVYGVTVLKDAPNRE------------VAIEFLRYLLSENGKRIFEK 290 (296)
T ss_dssp EEEETTTCCEEECCCCEEEEEECTTCTTHH------------HHHHHHHHHHSHHHHHHHHH
T ss_pred eEEecCCcccccCceeeeeEEEeCCCCCHH------------HHHHHHHHHhChHHHHHHHH
Confidence 89999987 445677899999999999 99999999999999999875
No 77
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=99.49 E-value=7.1e-13 Score=125.80 Aligned_cols=209 Identities=12% Similarity=0.112 Sum_probs=135.1
Q ss_pred eeEEEEeCCCC--ccHHHHHHHHhhcCCeEEEEEeeeccccc--------ccceEecC--chhHHHHHHCCCcccccccc
Q 044097 136 VPLRVVSLQNS--VPQSWVKDFMRSQGKRLKFQMNLCASIDG--------IVNNLSTP--FNKLSFAIKKRFIEPIAEAE 203 (439)
Q Consensus 136 ~~L~v~~w~~~--~~~~li~~Fek~~GI~V~~~~~~~~s~~~--------~~~dv~~~--~~~~~~~i~~Gll~pl~~~~ 203 (439)
.+|+|++..+. ..+++++.|++++||+|++. +++... ...||+.+ ..++..+.++|++.+.
T Consensus 7 ~~l~v~~a~s~~~~~~~l~~~Fe~~~gi~V~~~---~~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~---- 79 (237)
T 3r26_A 7 GKITVFAAASLTNAMQDIATQFKKEKGVDVVSS---FASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTA---- 79 (237)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHCCEEEEE---EECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGG----
T ss_pred CcEEEEEccchHHHHHHHHHHHHhccCCeEEEE---ECCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCC----
Confidence 47888887653 34789999999999999986 222211 11233322 2345555555554321
Q ss_pred cchhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcc-cccCCCCCCCCcccccCccccCceeeccChh
Q 044097 204 DQDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSK-FQNHNLAPIEDWKDPWWPELAGRISMVNSPR 282 (439)
Q Consensus 204 ~~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~-~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~ 282 (439)
+..+|..+.++|+||++. .+..++..+++|.+|+++ ++|++.+...
T Consensus 80 ------------------------------~~~~~~~~~lvl~~~~~~~~~~~~i~~~~~l~~l~~~---~~iai~~p~~ 126 (237)
T 3r26_A 80 ------------------------------TRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNG---GRLAVGDPEH 126 (237)
T ss_dssp ------------------------------GCEEEEEECEEEEEESSCCCCCCCCSTTCCHHHHHTT---CCEEEECTTT
T ss_pred ------------------------------ceeeeEcceEEEEEeCCCCcccccccchHhHHHhcCC---CeEEEeCCCC
Confidence 124556778999999985 343344557889988763 6888876432
Q ss_pred HHHHhCCHHHHH---HHHHHHhhhhcccC-chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeE--EccCCCceeeeeE
Q 044097 283 EVIVAGGKIAVQ---QNLALLANQVRLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV--VVPKSGASLWADL 356 (439)
Q Consensus 283 ~~~~~~G~d~~~---e~L~~l~~~v~~~~-~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~--~vP~eG~~~~~~~ 356 (439)
...+.... .++ ..+..+++++.... ..+..+.+.+|++.+++.|.+++.. ...+.+ .+|+++.......
T Consensus 127 ~p~G~~a~-~~l~~~g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~----~~~~~~v~~~P~~~~~~~~~~ 201 (237)
T 3r26_A 127 VPAGIYAK-EALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVA----SKGVKVVATFPEDSHKKVEYP 201 (237)
T ss_dssp CHHHHHHH-HHHHHTTCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHH----CSSEEEEEECCGGGSCCEEEE
T ss_pred CChHHHHH-HHHHHcCCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEeccccc----CCCCeEEEECCcccCCeeeee
Confidence 21111000 000 11234555543222 2456788999999999999877653 234555 4898877777788
Q ss_pred EEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCC
Q 044097 357 WAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPG 404 (439)
Q Consensus 357 ~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~ 404 (439)
++|.++++| + +|++|++||+|+|.|..|.+ .||
T Consensus 202 ~ai~k~~~~-~------------~A~~Fi~fl~S~eaq~i~~~--~Gf 234 (237)
T 3r26_A 202 VAVVEGHNN-A------------TVKAFYDYLKGPQAAEIFKR--YGF 234 (237)
T ss_dssp EEEBTTCCS-H------------HHHHHHHHHTSHHHHHHHHH--TTC
T ss_pred EEEEcCCCC-H------------HHHHHHHHHcCHHHHHHHHH--cCC
Confidence 999999998 6 79999999999999999975 455
No 78
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=99.47 E-value=8.1e-13 Score=129.16 Aligned_cols=218 Identities=11% Similarity=0.056 Sum_probs=129.8
Q ss_pred eeEEEEeCCCC--ccHHHHHHHHhhc-CCeEEEEEeeecccccccceEecCchhHHHHHHCCCcccccccccchhhcccc
Q 044097 136 VPLRVVSLQNS--VPQSWVKDFMRSQ-GKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLS 212 (439)
Q Consensus 136 ~~L~v~~w~~~--~~~~li~~Fek~~-GI~V~~~~~~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~ 212 (439)
.+|+|+++.+. ..+++++.|++++ ||+|++. +++..+ .+.++.++|- +.+.. +..-.
T Consensus 5 ~~l~v~~a~s~~~~~~~l~~~F~~~~~gi~V~~~---~~~s~~----------l~~~i~~~g~--~~Dv~-----~~a~~ 64 (296)
T 3cfx_A 5 EVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQRE---AAGSAQ----------SVRKITELGK--KADVL-----ASADY 64 (296)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHHSTTCEEEEE---ECCHHH----------HHHHHHTSCC--CCSEE-----EESST
T ss_pred ceEEEEecccHHHHHHHHHHHHHHHCCCceEEEE---eCchHH----------HHHHHHhCCC--CCcEE-----EECCh
Confidence 47888886543 3468999999995 9999986 232222 1223322242 32221 11000
Q ss_pred hhHHHhhhcCCCcccCCCCCE-EEeeeecceEEEEEeCcccccCCCCCCCCccccc-CccccCceeeccChhHHH-----
Q 044097 213 HKWKVYLRSNDAGEIDPRGKI-WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPW-WPELAGRISMVNSPREVI----- 285 (439)
Q Consensus 213 ~~~~~~l~~~~~~~~D~dGk~-YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~-dp~lkgkI~~~~~~~~~~----- 285 (439)
.....+.. .|-+ |.+||.++..+|+||++.....++ .|++|.||+ +| +++|++.+......
T Consensus 65 ~~~~~l~~---------~gl~~~~~~~~~~~l~i~~~~~~~~~~~~-~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~ 132 (296)
T 3cfx_A 65 ALIPSLMV---------PEYADWYAAFARNQMILAYTNESKYGDEI-NTDNWYEILRRP--DVRYGFSNPNDDPAGYRSQ 132 (296)
T ss_dssp THHHHHTT---------TTTCSCEEEEEECCEEEEECTTSTTTTTC-CTTTHHHHHHST--TCCEEEECTTTCHHHHHHH
T ss_pred hhHHHHHh---------CCCccceeeeEeeeEEEEEeCCCccccCC-CcccHHHHhCCC--CeEEEEeCCCCCCCcHHHH
Confidence 11111110 1211 568899999999999997644222 579999954 66 46899876432111
Q ss_pred ---HhCCHH-HHHHHHHHHhhh------------------------------hccc-CchHHHHHhhcCCeEEEEEcccc
Q 044097 286 ---VAGGKI-AVQQNLALLANQ------------------------------VRLF-DSTHYLKAFGIGDVWVAVGWSSD 330 (439)
Q Consensus 286 ---~~~G~d-~~~e~L~~l~~~------------------------------v~~~-~~~~~~~~f~~Ge~~~~i~ws~~ 330 (439)
...|.. .....+..+... +... +..+..+.+.+|++.+++.|.+.
T Consensus 133 ~~l~~~~~~~~~~~~~~~l~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~ 212 (296)
T 3cfx_A 133 MVTQLAESYYNDDMIYDDLMLANTGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSV 212 (296)
T ss_dssp HHHHHHHHHTTCTTHHHHHTGGGSSCEEEECTTSCEEEECCCGGGCCCCTTTEEEESSGGGGHHHHHTTSCSEEEEEHHH
T ss_pred HHHHHHHHhhcCccHHHHHhhcccccccccccCCcccccccccccccccccceeecccHHHHHHHHHcCCCCEEEeehhh
Confidence 111100 001122333221 1111 23467789999999999999877
Q ss_pred HHHHHHcCCCeeE-EccCCCc-------------------------eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHH
Q 044097 331 VLPAVKRMSNVAV-VVPKSGA-------------------------SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQW 384 (439)
Q Consensus 331 ~~~~~~~~~~v~~-~vP~eG~-------------------------~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~F 384 (439)
+... .+.+ .+|+++. ....+.++|+++++|++ +|++|
T Consensus 213 a~~~-----~~~~~~~P~~~~~~~~~~~~~y~~v~~~~~~g~~~~~~~i~~~~~i~k~a~~~~------------~A~~F 275 (296)
T 3cfx_A 213 AEQH-----GFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSE------------LATEF 275 (296)
T ss_dssp HHHH-----TCEEECCCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCSCHH------------HHHHH
T ss_pred HhhC-----CCCEEECChhhcccCccccccccceeeeccCCccccCCceEEEEEeecCCCCHH------------HHHHH
Confidence 6542 2333 3676642 12357899999999999 99999
Q ss_pred HHHHhcHHhhHHHHhhcCCC
Q 044097 385 IEFCLQTARALPFKQEVIPG 404 (439)
Q Consensus 385 I~fllS~e~q~~~a~~~~g~ 404 (439)
|+||+|+|.|..+.+ .||
T Consensus 276 i~fllS~e~q~i~~~--~g~ 293 (296)
T 3cfx_A 276 VALLLGETGQQIFIE--NGQ 293 (296)
T ss_dssp HHHHHSHHHHHHHHH--TTC
T ss_pred HHHHhChHHHHHHHH--cCC
Confidence 999999999998875 355
No 79
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=99.46 E-value=1.1e-12 Score=127.93 Aligned_cols=218 Identities=8% Similarity=0.080 Sum_probs=129.3
Q ss_pred eeEEEEeCCCC--ccHHHHHHHHhhc-CCeEEEEEeeecccccccceEecCchhHHHHHHCCCcccccccccchhhcccc
Q 044097 136 VPLRVVSLQNS--VPQSWVKDFMRSQ-GKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLS 212 (439)
Q Consensus 136 ~~L~v~~w~~~--~~~~li~~Fek~~-GI~V~~~~~~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~ 212 (439)
.+|+|+.+.+. ..+++++.|++++ ||+|+++ +.+..+ .+.++.++|- +.+.. +..-.
T Consensus 5 ~~l~v~~a~s~~~~~~~l~~~F~~~~~gi~V~~~---~~~s~~----------l~~~i~~~g~--~~Dv~-----~~a~~ 64 (295)
T 3cij_A 5 VKLKVFHAGSLTEPMKAFKRAFEEKHPNVEVQTE---AAGSAA----------TIRKVTELGR--KADVI-----ATADY 64 (295)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHCTTCEEEEE---EECHHH----------HHHHHHTSCC--CCSEE-----EESST
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHCCCceEEEE---eCcHHH----------HHHHHHhCCC--CCCEE-----EEcCh
Confidence 46888876543 3468999999995 9999986 222211 1222222242 22221 01000
Q ss_pred hhHHHhhhcCCCcccCCCCCE-EEeeeecceEEEEEeCcccccCCCCCCCCccccc-CccccCceeeccChhHHH-----
Q 044097 213 HKWKVYLRSNDAGEIDPRGKI-WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPW-WPELAGRISMVNSPREVI----- 285 (439)
Q Consensus 213 ~~~~~~l~~~~~~~~D~dGk~-YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~-dp~lkgkI~~~~~~~~~~----- 285 (439)
.....+.. +|-+ |.+||.++..+|+||++.....++ .|++|.||+ ++ +++|++.+......
T Consensus 65 ~~~~~l~~---------~gl~~~~~~~~~~~lvl~~~~~~~~~~~i-~~~~w~dll~~~--~~~I~~~~p~~~~~G~~~~ 132 (295)
T 3cij_A 65 TLIQKMMY---------PEFANWTIMFAKNQIVLAYRNDSRYADEI-NSQNWYEILKRP--DVRFGFSNPNDDPCGYRSL 132 (295)
T ss_dssp HHHHHHHT---------TTTCCCCEEEEECCEEEEECTTSTTTTTC-CTTTHHHHHTST--TCCEEEECTTTCHHHHHHH
T ss_pred hhHHHHHh---------CCCcceeeEEEeeeEEEEEeCCCcccccc-CcccHHHHhcCC--CcEEEEeCCCcCCccHHHH
Confidence 11111110 0211 457888999999999997654322 579999954 66 47899876432111
Q ss_pred ---HhCCHHH-HHHHHHHHhhh-----------------------------hccc-CchHHHHHhhcCCeEEEEEccccH
Q 044097 286 ---VAGGKIA-VQQNLALLANQ-----------------------------VRLF-DSTHYLKAFGIGDVWVAVGWSSDV 331 (439)
Q Consensus 286 ---~~~G~d~-~~e~L~~l~~~-----------------------------v~~~-~~~~~~~~f~~Ge~~~~i~ws~~~ 331 (439)
...|... ..+.+..+... +... +..+..+.+.+|++.+++.|.+.+
T Consensus 133 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ge~d~~i~~~s~a 212 (295)
T 3cij_A 133 MAIQLAELYYNDPTIFDELVAKNSNLRFSEDNGSYVLRMPSSERIEINKSKIMIRSMEMELIHLVESGELDYFFIYKSVA 212 (295)
T ss_dssp HHHHHHHHHTTCTTHHHHHTGGGBSCCEEEETTEEEEECCCGGGCCBCTTTEEEESSTHHHHHHHHTTSCSEEEEEHHHH
T ss_pred HHHHHHHHhccCCcHHHHHhhccccccccccCCcccccccccccccccccceeecccHHHHHHHHhCCCCCEEEEEeehh
Confidence 1111000 00122333211 1112 234677899999999999988776
Q ss_pred HHHHHcCCCeeE-EccCCCc-------------------------eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH
Q 044097 332 LPAVKRMSNVAV-VVPKSGA-------------------------SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI 385 (439)
Q Consensus 332 ~~~~~~~~~v~~-~vP~eG~-------------------------~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI 385 (439)
.. . .+.+ .+|+++. ......++|+++++|++ +|++||
T Consensus 213 ~~---~--~~~~~~~P~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi 275 (295)
T 3cij_A 213 KQ---H--GFNFVELPVEIDLSSPDYAELYSKVKVVLANGKEVTGKPIVYGITIPKNAENRE------------LAVEFV 275 (295)
T ss_dssp HH---T--TCEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCSCHH------------HHHHHH
T ss_pred hh---C--CCCEEECchhhccCCccccccccceEEeccCCccccCCceEEEEEeecCCCCHH------------HHHHHH
Confidence 53 1 2333 4787752 12346899999999999 999999
Q ss_pred HHHhcHHhhHHHHhhcCCC
Q 044097 386 EFCLQTARALPFKQEVIPG 404 (439)
Q Consensus 386 ~fllS~e~q~~~a~~~~g~ 404 (439)
+||+|+|.|..+.+ .||
T Consensus 276 ~fl~S~e~q~i~~~--~g~ 292 (295)
T 3cij_A 276 KLVISEEGQEILRE--LGQ 292 (295)
T ss_dssp HHHHSHHHHHHHHH--TTC
T ss_pred HHHhChhHHHHHHH--cCC
Confidence 99999999998874 355
No 80
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=99.40 E-value=4.6e-12 Score=122.00 Aligned_cols=206 Identities=11% Similarity=0.081 Sum_probs=129.7
Q ss_pred eEEEEeCCCC--ccHHHHHHHHhhcCCeEEEEEeeeccccc--------ccceEecC--chhHHHHHHCCCccccccccc
Q 044097 137 PLRVVSLQNS--VPQSWVKDFMRSQGKRLKFQMNLCASIDG--------IVNNLSTP--FNKLSFAIKKRFIEPIAEAED 204 (439)
Q Consensus 137 ~L~v~~w~~~--~~~~li~~Fek~~GI~V~~~~~~~~s~~~--------~~~dv~~~--~~~~~~~i~~Gll~pl~~~~~ 204 (439)
+|+|+++.+. ..+++++.|++++||+|+++ +++... ...||+.+ ..++..+.++|++.+.
T Consensus 24 ~L~V~~a~s~~~~~~~l~~~Fe~~~gi~V~~~---~~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~----- 95 (253)
T 3gzg_A 24 PVTVFAAASLKESMDEAATAYEKATGTPVRVS---YAASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPA----- 95 (253)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHHSCCEEEE---EECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGG-----
T ss_pred CEEEEEecChHHHHHHHHHHHHHHhCCeEEEE---ECChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCC-----
Confidence 6888887764 33689999999999999986 222111 11233332 2345555555554321
Q ss_pred chhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCccccc-CCCCCCCC--cccccCccccCceeeccCh
Q 044097 205 QDWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQN-HNLAPIED--WKDPWWPELAGRISMVNSP 281 (439)
Q Consensus 205 ~~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~-~Gl~~P~T--W~DL~dp~lkgkI~~~~~~ 281 (439)
+..++..+..+|+||++.... . .+++ |.+++++ .++|++.+..
T Consensus 96 -----------------------------~~~~~a~~~lvl~~~~~~~~~~~---~i~~~dl~~l~~~--~~~iai~dP~ 141 (253)
T 3gzg_A 96 -----------------------------QRHNLLGNTLVLVAPASSKLRVD---PRAPGAIAKALGE--NGRLAVGQTA 141 (253)
T ss_dssp -----------------------------GEEEEEEECEEEEEETTCCCCCC---TTSTTHHHHHTTT--TCCEEEECTT
T ss_pred -----------------------------cceeEEeeEEEEEEECCCCcccC---CCCHHHHHHhhcC--CCEEEEeCCC
Confidence 123456678899999986532 2 2455 6665443 3689887642
Q ss_pred hHHHHhCCHHHHHH---HHHHHhhhhcccC-chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE--ccCCCceeeee
Q 044097 282 REVIVAGGKIAVQQ---NLALLANQVRLFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV--VPKSGASLWAD 355 (439)
Q Consensus 282 ~~~~~~~G~d~~~e---~L~~l~~~v~~~~-~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~--vP~eG~~~~~~ 355 (439)
....+... ..+++ .+..+++++.... ..+..+.+.+|++.+++.|.+++.. ...+.++ +|+++......
T Consensus 142 ~~p~G~~a-~~~l~~~g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s~a~~----~~~v~~v~~~P~~~~~~i~~ 216 (253)
T 3gzg_A 142 SVPAGSYA-AAALRKLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGSDARA----DAKVRVVATFPDDSHDAIVY 216 (253)
T ss_dssp TSHHHHHH-HHHHHHTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHHHHHH----CTTEEEEEECCGGGSCCEEE
T ss_pred CCchHHHH-HHHHHHcCcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhhcccc----CCCceEEEECCcccCceeEE
Confidence 21111000 00101 1234445442222 2356678899999999999877652 2456654 79887777777
Q ss_pred EEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCC
Q 044097 356 LWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQEVIPG 404 (439)
Q Consensus 356 ~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~ 404 (439)
.++|.+++ +++ +|++|++||+|+|.|..|.+ .||
T Consensus 217 ~~ai~k~~-~~~------------~A~~Fi~fl~S~eaq~i~~~--~Gf 250 (253)
T 3gzg_A 217 PVAALKNS-NNP------------ATAAFVSWLGSKPAKAIFAR--RGF 250 (253)
T ss_dssp EEEECTTC-CCT------------THHHHHHHTTSHHHHHHHHH--TTC
T ss_pred EEEEECCC-ChH------------HHHHHHHHHcCHHHHHHHHH--cCC
Confidence 89999988 777 89999999999999999975 455
No 81
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=99.37 E-value=2.1e-12 Score=120.88 Aligned_cols=201 Identities=9% Similarity=0.053 Sum_probs=123.3
Q ss_pred eeEEEEeCCCC--ccHHHHHHHHhhcCCeEEEEEeeeccccccc------ceEe-cCc-hhHHHHHHCCCcccccccccc
Q 044097 136 VPLRVVSLQNS--VPQSWVKDFMRSQGKRLKFQMNLCASIDGIV------NNLS-TPF-NKLSFAIKKRFIEPIAEAEDQ 205 (439)
Q Consensus 136 ~~L~v~~w~~~--~~~~li~~Fek~~GI~V~~~~~~~~s~~~~~------~dv~-~~~-~~~~~~i~~Gll~pl~~~~~~ 205 (439)
++|+|+++++. ..+++++.|++++||+|++. +++..++. .||. .+. .++..+.++| +++++.
T Consensus 1 ~~l~v~~~~~~~~~~~~~~~~F~~~~gi~V~~~---~~~s~~l~~~l~~~~Dv~~~~~~~~~~~l~~~~-~~~~~~---- 72 (237)
T 2hxw_A 1 MDVNLYGPGGPHTALKDIANKYSEKTGVKVNVN---FGPQATWFEKAKKDADILFGASDQSALAIASDF-GKDFNV---- 72 (237)
T ss_dssp -CEEEEECSSTHHHHHHHHHHHHHHHCCCEEEE---ESSHHHHHHHHHHHCSEEEESSHHHHHHHHTTS-GGGCCG----
T ss_pred CeEEEEeccchHHHHHHHHHHHHHHhCceEEEE---eCChHHHHHHhccCCCEEEeCCHHHHHHHHHhc-ccccCc----
Confidence 36788887654 34679999999999999986 33322211 1332 222 3444444444 322221
Q ss_pred hhhcccchhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccCh----
Q 044097 206 DWFKRLSHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSP---- 281 (439)
Q Consensus 206 ~~~~~i~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~---- 281 (439)
. ...++..+..+++||++.- ..|++|+||++|++ +|++.+..
T Consensus 73 ------------------------~---~~~~~~~~~~~l~~~~~~~-----~~~~sw~dL~~~~~--~i~~~d~~~~~~ 118 (237)
T 2hxw_A 73 ------------------------S---KIKPLYFREAIILTQKGNP-----LKIKGLKDLANKKV--RIVVPEGAGKSN 118 (237)
T ss_dssp ------------------------G---GCEEEEEEEEEEEESTTCT-----TCCCSHHHHHHSCC--CEEECCCTTSSC
T ss_pred ------------------------c---cccccccCceEEEEeCCCC-----CCCCCHHHhcCCCc--EEEecCCCCCCc
Confidence 0 0134456678999999841 25799999999865 68876531
Q ss_pred ---hHHHH----hCCHHHHHHHHHHHhhhhcccCc--hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCce-
Q 044097 282 ---REVIV----AGGKIAVQQNLALLANQVRLFDS--THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGAS- 351 (439)
Q Consensus 282 ---~~~~~----~~G~d~~~e~L~~l~~~v~~~~~--~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~- 351 (439)
...+. ..|. .+.+.++++++..+.. .+..+.+.+|++.+++.|.+.+.. ..+..+++|.++..
T Consensus 119 ~~~~g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~ 191 (237)
T 2hxw_A 119 TSGTGVWEDMIGRTQD---IKTIQNFRNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKS----NPDIGTAVAIEKDLV 191 (237)
T ss_dssp CTTTTHHHHHHHTTCC---HHHHHHHHHTEEEECCCCTTC--CTTTTTCSEEEEEHHHHHH----STTSSEEEECCTTTC
T ss_pred ccchHHHHHHHHHccC---HHHHHHHhhceEEEcCCHHHHHHHHHcCCeeEEEEechhhhc----CCCceEEEecCCcee
Confidence 11111 1131 3456677777643332 234556889999999999876532 22344455544432
Q ss_pred ee-eeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHHh
Q 044097 352 LW-ADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFKQ 399 (439)
Q Consensus 352 ~~-~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a~ 399 (439)
.+ ...++|.+++ ++ +|++||+|++|+|.|..+++
T Consensus 192 ~~~~~~~~i~~~~--~~------------~A~~Fi~fl~s~e~q~~~~~ 226 (237)
T 2hxw_A 192 VYRTFNVIAKEGA--SK------------ETQDFIAYLSSKEAKEIFKK 226 (237)
T ss_dssp CEEEEEEEECTTC--CH------------HHHHHHHHTTSHHHHHHHHH
T ss_pred EEeeeeEEEccCC--hH------------HHHHHHHHHcCHHHHHHHHH
Confidence 23 3478898887 66 89999999999999999975
No 82
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=2.9e-11 Score=117.84 Aligned_cols=218 Identities=10% Similarity=0.055 Sum_probs=126.9
Q ss_pred ceeEEEEeCCCC--ccHHHHHHHHhhc-CCeEEEEEeeecccccccceEecCchhHHHHHHCCCcccccccccchhhccc
Q 044097 135 TVPLRVVSLQNS--VPQSWVKDFMRSQ-GKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRL 211 (439)
Q Consensus 135 ~~~L~v~~w~~~--~~~~li~~Fek~~-GI~V~~~~~~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i 211 (439)
..+|+|++..+. ..+++++.|++++ ||+|+++ +++..+ .+.++.++|- +.+.. +..-
T Consensus 4 ~~~l~v~~a~s~~~~~~~l~~~F~~~~~gi~V~~~---~~~s~~----------l~~~i~~~g~--~~Dv~-----~~a~ 63 (292)
T 3cfz_A 4 KIVLKIFHAGSLSVPFEEYEKMFEKEHPNVDVERE---PAGSVA----------CVRKIIDLGK--KADIL-----ASAD 63 (292)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHHCTTEEEEEE---EECHHH----------HHHHHHTSCC--CCSEE-----EESS
T ss_pred CceEEEEEccchHHHHHHHHHHHHHHCCCceEEEE---eCCHHH----------HHHHHHhcCC--CCcEE-----EECC
Confidence 347888876553 3468999999995 9999986 222222 1223333242 22221 1100
Q ss_pred chhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCccccc-CccccCceeeccChhHHHH----
Q 044097 212 SHKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPW-WPELAGRISMVNSPREVIV---- 286 (439)
Q Consensus 212 ~~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~-dp~lkgkI~~~~~~~~~~~---- 286 (439)
......+.. .+..+ |.+||.++..+|+||++.....++ .|++|.||+ +| +++|++.+.......
T Consensus 64 ~~~~~~l~~---~gl~~-----~~~~~~~~~lvi~~~~~~~~~~~i-~~~~w~dll~~p--~~~I~~~dp~~~~~G~~~~ 132 (292)
T 3cfz_A 64 YSLIPQMMM---PKYAD-----WYVMFARNEIVLAYTDKSKYKDEI-NSTNWYKILQRP--DVKIGFSNPNDDPCGYRTQ 132 (292)
T ss_dssp TTHHHHHTT---TTTCS-----CCEEEEECCEEEEECTTSTTTTTC-CTTTHHHHTTST--TCCEEEECTTTCHHHHHHH
T ss_pred hHHHHHHHh---CCCcc-----ceeeeEeccEEEEEcCCCccccCC-CcccHHHHhcCC--CcEEEeCCCCCCCCcHHHH
Confidence 011111110 01111 457888999999999997654333 479999955 66 468998764321111
Q ss_pred ----hCCHHH-HHHHHHHHhhh---------------------------hccc-CchHHHHHhhcCCeEEEEEccccHHH
Q 044097 287 ----AGGKIA-VQQNLALLANQ---------------------------VRLF-DSTHYLKAFGIGDVWVAVGWSSDVLP 333 (439)
Q Consensus 287 ----~~G~d~-~~e~L~~l~~~---------------------------v~~~-~~~~~~~~f~~Ge~~~~i~ws~~~~~ 333 (439)
..|... ....+..+... .... ...+..+.+.+|++.+++.|.+.+..
T Consensus 133 ~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~s~a~~ 212 (292)
T 3cfz_A 133 MVLQLAELYYKDPTIYDNLVLKHSNIKVEENNGTYLILVPKELDVDTNKLFVRSKETDLLAPLEAGAFDYLFIYKSVANQ 212 (292)
T ss_dssp HHHHHHHHHHTCTTHHHHHTGGGBSCEEEEETTEEEEEECSSCCBCTTTEEEESSGGGGHHHHHTTSSSEEEEEHHHHHH
T ss_pred HHHHHHHHhccCCcHHHHHhcccccccccccCCcccccccccccccccceeecccHHHHHHHHHCCCCCEEEEEehhhhh
Confidence 111100 01123333321 1111 22456788999999999998877653
Q ss_pred HHHcCCCeeE-EccCCCc--------------------------eeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH
Q 044097 334 AVKRMSNVAV-VVPKSGA--------------------------SLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE 386 (439)
Q Consensus 334 ~~~~~~~v~~-~vP~eG~--------------------------~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~ 386 (439)
. .+.+ .+|+++. ..+...++|.++++|++ +|++||+
T Consensus 213 ---~--~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~k~a~~~~------------~A~~Fi~ 275 (292)
T 3cfz_A 213 ---H--HLKYIELPKEINLGYYEYADTYKKVALKIIAKNKTINAKPIVYGMTVPTNAPHKK------------EAIEFVK 275 (292)
T ss_dssp ---T--TCEEECCCTTTSSCCGGGHHHHTTEEEEEGGGTEEEECCCCEEEEECCTTCTTHH------------HHHHHHH
T ss_pred ---C--CCCEEECChhhcccCccccchhhceeeeeccccccccCCceeEEEEeecCCCCHH------------HHHHHHH
Confidence 1 2344 3666531 12457899999999999 9999999
Q ss_pred HHhcHHhhHHHHhhcCCC
Q 044097 387 FCLQTARALPFKQEVIPG 404 (439)
Q Consensus 387 fllS~e~q~~~a~~~~g~ 404 (439)
||+ |.|..+.+ .||
T Consensus 276 fl~--e~q~i~~~--~gf 289 (292)
T 3cfz_A 276 FVL--GHPEVLEN--NGQ 289 (292)
T ss_dssp HHH--HCTHHHHT--TTC
T ss_pred HHH--HHHHHHHH--cCC
Confidence 999 89988864 355
No 83
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=99.24 E-value=2.5e-10 Score=104.40 Aligned_cols=146 Identities=11% Similarity=0.011 Sum_probs=95.0
Q ss_pred EeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHH--------HHhCCHHHHHHHHHH--Hhhhh
Q 044097 235 AAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREV--------IVAGGKIAVQQNLAL--LANQV 304 (439)
Q Consensus 235 gvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~--------~~~~G~d~~~e~L~~--l~~~v 304 (439)
..|+..+.++++||++.. .+.+|+||.++.+ ++|.+.+..... +...|. ... +++++
T Consensus 74 ~~~~~~~~~vlv~~~~~~------~~~~~~dL~~~~~-~~i~~~~~~~~~~~~~~~~~l~~~g~------~~~~~~~~~~ 140 (231)
T 1atg_A 74 RFTYAIGKLVLWSAKPGL------VDNQGKVLAGNGW-RHIAISNPQIAPYGLAGTQVLTHLGL------LDKLTAQERI 140 (231)
T ss_dssp CEEEEECCEEEEESSTTT------SCTTSGGGGSSSC-SCEEEECTTTCHHHHHHHHHHHHTTC------HHHHHHTTCE
T ss_pred eeEeeeeeEEEEEcCCCC------CCcchhhhccCCC-CEEEecCCCCCchhHHHHHHHHHCCC------cccccccceE
Confidence 367778889999999852 3458999999765 678776532111 111221 111 33333
Q ss_pred cccCc-hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHH
Q 044097 305 RLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQ 383 (439)
Q Consensus 305 ~~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~ 383 (439)
....+ ....+.+.+|++.+++.|.+.+...........+.+|.++.......++|.+++++++ +|++
T Consensus 141 ~~~~~~~~~~~~v~~G~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~~~~~~~~------------~a~~ 208 (231)
T 1atg_A 141 VEANSVGQAHSQTASGAADLGFVALAQIIQAAAKIPGSHWFPPANYYEPIVQQAVITKSTAEKA------------NAEQ 208 (231)
T ss_dssp EEESSHHHHHHHHHTTSSSEEEEEGGGTCCTTSCCSSEEECCCGGGSCCCEEEEEEBTTCSCHH------------HHHH
T ss_pred EecCCHHHHHHHHHcCCCCEEEEEHHHhhhccccccCeEEEeCcccCccceEeEEEecCCCChH------------HHHH
Confidence 22333 3567889999988888877654311111123455678766544555788999998887 9999
Q ss_pred HHHHHhcHHhhHHHHhhcCCCCCC
Q 044097 384 WIEFCLQTARALPFKQEVIPGASP 407 (439)
Q Consensus 384 FI~fllS~e~q~~~a~~~~g~~~P 407 (439)
||+|+.|++.|..+.+ .||.+|
T Consensus 209 fi~~l~s~~~q~~~~~--~g~~~~ 230 (231)
T 1atg_A 209 FMSWMKGPKAVAIIKA--AGYVLP 230 (231)
T ss_dssp HHHHTTSHHHHHHHHH--TTCBCC
T ss_pred HHHHHcCHHHHHHHHH--hCCCCC
Confidence 9999999999998875 467554
No 84
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=99.09 E-value=1.7e-09 Score=109.17 Aligned_cols=237 Identities=12% Similarity=0.096 Sum_probs=131.3
Q ss_pred eeEEEEeCCCC--ccHHHHHHHHhhc-CCeEEEEEeeecccccccceEecCchhHHHHHHCCCcccccccccchhhcccc
Q 044097 136 VPLRVVSLQNS--VPQSWVKDFMRSQ-GKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIEPIAEAEDQDWFKRLS 212 (439)
Q Consensus 136 ~~L~v~~w~~~--~~~~li~~Fek~~-GI~V~~~~~~~~s~~~~~~dv~~~~~~~~~~i~~Gll~pl~~~~~~~~~~~i~ 212 (439)
.+|+|+.+.+. ..+++.+.|++++ |++|+++ +++... .+.+.+++|. +.+.. +..-.
T Consensus 43 ~~L~V~~a~sl~~~~~~l~~~Fe~~~pgv~V~~~---~ggSg~----------l~~qi~e~G~--~aDVf-----~sad~ 102 (354)
T 3k6v_A 43 EVLTVFHAGSLSVPFEELEAEFEAQHPGVDVQRE---AAGSAQ----------SVRKITELGK--KADVL-----ASADY 102 (354)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHSTTCEEEEE---EECHHH----------HHHHHHTSCC--CCSEE-----EESST
T ss_pred CcEEEEEecchHHHHHHHHHHHHHHCCCcEEEEE---eCCHHH----------HHHHHHhcCC--CccEE-----EECCH
Confidence 36888887653 3468999999998 9999986 332211 1222223443 22211 00000
Q ss_pred hhHHHhhhcCCCcccCCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCc-ccccCccccCceeeccChhHHHHhCCHH
Q 044097 213 HKWKVYLRSNDAGEIDPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDW-KDPWWPELAGRISMVNSPREVIVAGGKI 291 (439)
Q Consensus 213 ~~~~~~l~~~~~~~~D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW-~DL~dp~lkgkI~~~~~~~~~~~~~G~d 291 (439)
.....+.. .+ .. + +-.++..+.++|+++++.-...++. +.+| ++|.++.. +|++.+......+...+.
T Consensus 103 ~~~~~l~~---~g-~~--~--~~~~~a~n~lVliv~~~~p~~~~I~-~~~~~~~L~~~~~--riai~~P~~~P~G~~a~~ 171 (354)
T 3k6v_A 103 ALIPSLMV---PE-YA--D--WYAAFARNQMILAYTNESKYGDEIN-TDNWYEILRRPDV--RYGFSNPNDDPAGYRSQM 171 (354)
T ss_dssp THHHHHTT---TT-TC--S--CEEEEEECCEEEEECTTSTTTTTCC-TTTHHHHHHSTTC--CEEEECTTTCHHHHHHHH
T ss_pred HHHHHHHh---CC-CC--C--CceEeECCeEEEEEECCCccccccC-cccHHHHhcCCCC--EEEEcCCCCCChHHHHHH
Confidence 11111110 01 10 2 4577888999999998753222221 2467 57777664 788876432211110000
Q ss_pred ---HHH------HHHHHHh---hhh-------------------------cc-c--CchHHHHHhhcCCeEEEEEccccH
Q 044097 292 ---AVQ------QNLALLA---NQV-------------------------RL-F--DSTHYLKAFGIGDVWVAVGWSSDV 331 (439)
Q Consensus 292 ---~~~------e~L~~l~---~~v-------------------------~~-~--~~~~~~~~f~~Ge~~~~i~ws~~~ 331 (439)
.+. ..+.++. .++ +. + +..+....+..|++.+++.|.+++
T Consensus 172 ~l~~a~~~~~~~gl~~~l~~~~~~v~l~~~~~g~~~~~~p~~~~~~~~~~k~v~~~~v~~~l~~v~~G~aDag~vy~S~a 251 (354)
T 3k6v_A 172 VTQLAESYYNDDMIYDDLMLANTGMTLTTEENGTALIHVPASEEISPNTSKIMLRSMEVELSSALETGEIDYLYIYRSVA 251 (354)
T ss_dssp HHHHHHHHHTCTTHHHHHTGGGSSCEEEECTTSCEEEECCCHHHHCCCTTTEEEESSHHHHHHHHHHTSCSEEEEEHHHH
T ss_pred HHHHHHhhcccccHHHHHhhhccccccccccCcccccccccccccccccceeEeCCCHHHHHHHHHcCCCCEEEEEhhhh
Confidence 000 1122221 000 01 1 113566788999999999998877
Q ss_pred HHHHHcCCCeeEE-ccCCCce-------------------------eeeeEEEEecCCCCcccccCCCCCCCHHHHHHHH
Q 044097 332 LPAVKRMSNVAVV-VPKSGAS-------------------------LWADLWAIPAASRLETKQIGGQVRGPSPLIHQWI 385 (439)
Q Consensus 332 ~~~~~~~~~v~~~-vP~eG~~-------------------------~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI 385 (439)
... .+.++ +|.+-.. -....++|.++++|++ +|++|+
T Consensus 252 ~~~-----~l~~v~lP~~~n~~~~~~~~~y~~v~v~~~~~~~~~~~Pi~y~~ai~k~a~~~~------------~A~~Fi 314 (354)
T 3k6v_A 252 EQH-----GFEYVALPPAIDLSSLEYADNYSKVQVEMVNGEVVTGSPIVYGVTIPNNAENSE------------LATEFV 314 (354)
T ss_dssp HHH-----TCEEEECCTTTSSCCGGGHHHHTTEEEECTTSCEEECCCCEEEEECCTTCTTHH------------HHHHHH
T ss_pred hhc-----CCcEEeCChhhccccccccccccceeeeccccccccCCceeEeEEeecCCCCHH------------HHHHHH
Confidence 542 25554 5643110 0246789999999998 999999
Q ss_pred HHHhcHHhhHHHHhhcCCCCCCCccccc--ccCCCHHHhc
Q 044097 386 EFCLQTARALPFKQEVIPGASPSALEST--LVKLPEELLK 423 (439)
Q Consensus 386 ~fllS~e~q~~~a~~~~g~~~P~~~~~~--~~~lp~el~~ 423 (439)
+||+|++.|..|.+ .||.+ ....-. +..+|++|+.
T Consensus 315 ~fL~S~eaq~i~~~--~Gf~p-~~~~~~~g~~~vp~~l~~ 351 (354)
T 3k6v_A 315 ALLLGETGQQIFIE--NGQPP-IVPAIAEGKDSMPEELQA 351 (354)
T ss_dssp HHHHSHHHHHHHHH--TTCCE-EEEEEEESGGGSCHHHHT
T ss_pred HHHcCHHHHHHHHH--CCCcc-cCCccccCCCCCCHHHHh
Confidence 99999999999875 46643 221111 1138988864
No 85
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=98.19 E-value=3.4e-05 Score=74.32 Aligned_cols=153 Identities=12% Similarity=0.012 Sum_probs=75.8
Q ss_pred EEeeeecceEEEEEeCcccccCC---------CCCCCCcccccCccccCceeeccChhHHHHhCCHHH-HHHHHHH----
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHN---------LAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIA-VQQNLAL---- 299 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~G---------l~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~-~~e~L~~---- 299 (439)
.-+|+..+..++++|++-....- ...+++|.|+--+..+-.+....+. .|... ..+.+..
T Consensus 105 ~~~~ia~d~~~vivn~~n~~~~lt~~~l~~i~~g~i~~W~~l~~~~~~i~~~~r~~~------sgt~~~f~~~~~~~~~~ 178 (279)
T 4gd5_A 105 KEVEIAYDGIALITHKNNPVKDLTLVQIKDIYTGKITNWKELGGNDAPIVVVSREDG------SGTRDAFQEIVGFKAEE 178 (279)
T ss_dssp EEEEEEEEEEEEEEETTCSCCEECHHHHHHHHTTSCCBGGGGTSCSSBCEEEEECTT------CHHHHHHHHHHTCCGGG
T ss_pred eEEEEEeeceeeeeccCCccccccHHHHHHHhcccccchhhcCCCccceeEEeCCCC------chHHHHHHHHHhccCcc
Confidence 45788888999999987543210 1246788887554322112222111 01111 1111110
Q ss_pred HhhhhcccCc-hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccC-----CCc-eeeeeEEEEecCCCCcccccCC
Q 044097 300 LANQVRLFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPK-----SGA-SLWADLWAIPAASRLETKQIGG 372 (439)
Q Consensus 300 l~~~v~~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~-----eG~-~~~~~~~aI~k~a~~~e~~~~~ 372 (439)
+........+ .+..+.+..++.+++...-+..... .+.-.++.+.|. +|. ++.-..+.|.++.++.+
T Consensus 179 ~~~~~~~~~~~~~~~~~V~~~~~aiGy~~~~~~~~~-~~~~~v~gv~pt~~~i~~g~YPl~rp~~~v~~~~~~~~----- 252 (279)
T 4gd5_A 179 LTVNSQISDGSGNIKSLVQGNENAIGYISFSYVDDS-VSAVKVDGVEATPENVLNKSYKVSRPFLAVYKEENLTE----- 252 (279)
T ss_dssp SCTTCEEESSHHHHHHHHHHCTTEEEEEEGGGCCTT-EEECEETTBCCCHHHHHTTCSCCEEEEEEEECTTTCCH-----
T ss_pred cCccccccCCcccceeEEeecCccceecchhhhhcc-ccEeeecCccCCHHHhhcCCCCcEEEEEEEEcCCCCCH-----
Confidence 1111111122 2445667777766654311111000 000112223342 232 22223456777777766
Q ss_pred CCCCCHHHHHHHHHHHhcHHhhHHHHhhcCCCCCCC
Q 044097 373 QVRGPSPLIHQWIEFCLQTARALPFKQEVIPGASPS 408 (439)
Q Consensus 373 ~~~~~~~aA~~FI~fllS~e~q~~~a~~~~g~~~P~ 408 (439)
++++|++|++|+|+|..+.+ .|| .|.
T Consensus 253 -------~ak~F~~f~~S~egQ~ii~~--~Gf-vPl 278 (279)
T 4gd5_A 253 -------SGKSFIDFILSEEGQDIVAK--EHL-IKV 278 (279)
T ss_dssp -------HHHHHHHHHHSHHHHHHHHH--TTC-BCC
T ss_pred -------HHHHHHHHHcCHHHHHHHHH--ccC-EeC
Confidence 89999999999999998865 466 564
No 86
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=94.43 E-value=1 Score=40.83 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=62.0
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccCc-h
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFDS-T 310 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~~-~ 310 (439)
+..|+.....+++++++.- ..+++++||-. .+|++..... ..+.+....+. +..+.+ .
T Consensus 121 ~s~p~~~~~~~~~~~~~~~-----~~i~~~~dL~g----~~i~~~~g~~----------~~~~l~~~~~~~~~~~~~~~~ 181 (269)
T 4i62_A 121 FSTPYYTAKNKLIVKKSDL-----ATYQSVNDLAQ----KKVGAQKGSI----------QETMAKDLLQNSSLVSLPKNG 181 (269)
T ss_dssp ECSCCEECCEEEEEEGGGT-----TTCSSGGGGC-----CEEEEETTSH----------HHHHHHHHCTTSEEEEESCHH
T ss_pred cccchhhcceEEEEECCcc-----ccccCHHHhCC----CeEEEecCch----------HHHHHHHhCCCCcEEecCCHH
Confidence 5667878888899988832 24688888732 1466543211 11223333222 223333 4
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE-ccCCCceeeeeEEEEecC
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAA 362 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~-vP~eG~~~~~~~~aI~k~ 362 (439)
+..+++.+|++.+++.+...+.....+.+..... ++..........+++.++
T Consensus 182 ~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (269)
T 4i62_A 182 NLITDLKSGQVDAVIFEEPVAKGFVENNPDLAIADLNFEKEQDDSYAVAMKKD 234 (269)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEECSCCCCC-CCCEECCEEESS
T ss_pred HHHHHHHcCCCCEEEeChHHHHHHHHhCCCCeEEeeccCCCcccceEEEEeCC
Confidence 6779999999999888777666655555555443 221111122335667765
No 87
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=93.21 E-value=2.8 Score=39.07 Aligned_cols=107 Identities=13% Similarity=0.121 Sum_probs=59.2
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHhhhhcccCc-hH
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDS-TH 311 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~~v~~~~~-~~ 311 (439)
+..||.....+++.+++. ++++++|| +| +|++...... ...|.++.-.+..+.+ .+
T Consensus 137 ~~~p~~~~~~~l~~~~~~-------~i~s~~dL-----~G~~v~v~~g~~~----------~~~l~~~~~~~~~~~~~~~ 194 (283)
T 2yln_A 137 KSEPYSWSGAVLVAHNDS-------NIKSIADI-----KGVKTAQSLTSNY----------GEKAKAAGAQLVPVDGLAQ 194 (283)
T ss_dssp ECSCSEEECEEEEEETTC-------SCCSGGGC-----TTSEEEECTTSHH----------HHHHHHTTCEEEECSSHHH
T ss_pred eccCeeeecEEEEEECCC-------CCCCHHHh-----CCCEEEEecCchH----------HHHHHHcCCeEEEeCCHHH
Confidence 455777777888888863 46888887 34 4665432211 1123332222333333 46
Q ss_pred HHHHhhcCCeEEEEEccccHHHHHHcCC--CeeEEccCCCceeeeeEEEEecC
Q 044097 312 YLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 362 (439)
Q Consensus 312 ~~~~f~~Ge~~~~i~ws~~~~~~~~~~~--~v~~~vP~eG~~~~~~~~aI~k~ 362 (439)
...++.+|++.+++.+...+....++.+ ++.+.-...........+++.++
T Consensus 195 ~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~ 247 (283)
T 2yln_A 195 SLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKG 247 (283)
T ss_dssp HHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESS
T ss_pred HHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCC
Confidence 7789999999998887766655554433 24443201111022345777776
No 88
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=92.94 E-value=0.13 Score=48.65 Aligned_cols=52 Identities=4% Similarity=-0.040 Sum_probs=39.5
Q ss_pred CCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHH
Q 044097 339 SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFK 398 (439)
Q Consensus 339 ~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a 398 (439)
.++.++++.++......++.+.+.++|+. -..+.|++|++||+|++.|..+.
T Consensus 182 ~~l~i~~~gd~~l~n~y~v~~v~p~~~~~--------~~~~~a~~f~~wl~s~~gQ~~i~ 233 (237)
T 3muq_A 182 LDLEILFQGDEKLFNPYQVILVNPERYPT--------INYQGAKAFSDWLVNPRGQELIN 233 (237)
T ss_dssp CSCEEEECCCGGGEEEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCeEEEEcCCCceeeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHHHHH
Confidence 46888888777777777777777777431 01339999999999999998875
No 89
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=89.43 E-value=8 Score=35.93 Aligned_cols=89 Identities=18% Similarity=0.148 Sum_probs=53.6
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHhh--hhcccC-c
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLAN--QVRLFD-S 309 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~--~v~~~~-~ 309 (439)
+..||.....+++.+++. .+++++||- | +|++...... ...+....+ .+..+. .
T Consensus 137 ~~~p~~~~~~~l~~~~~~-------~i~sl~dL~-----gk~v~~~~g~~~----------~~~l~~~~~~~~~~~~~~~ 194 (291)
T 2yjp_A 137 FADPYMKVALGVVSPKNK-------PITDMAQLK-----DQTLLVNKGTTA----------DAFFTKSHPEVKLLKFDQN 194 (291)
T ss_dssp ECCCCEEECEEEEEETTS-------CCCSGGGGT-----TSEEEEETTSHH----------HHHHHHHCTTSEEEEESSH
T ss_pred eccCeeecceEEEEeCCC-------CCCCHHHhC-----CCEEEEecCCcH----------HHHHHHhCCCceEEEeCCH
Confidence 556777777888888874 368888873 4 3665432110 112222222 222333 3
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV 344 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~ 344 (439)
.+..+++.+|++.+++.+...+.....+.+.+.+.
T Consensus 195 ~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~ 229 (291)
T 2yjp_A 195 TETFDALKDGRGVALAHDNALLWAWAKENPNFEVA 229 (291)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEEE
T ss_pred HHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEEc
Confidence 46778999999999888776666655555555553
No 90
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=85.48 E-value=1.2 Score=41.92 Aligned_cols=53 Identities=4% Similarity=-0.024 Sum_probs=34.2
Q ss_pred CCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHH
Q 044097 338 MSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFK 398 (439)
Q Consensus 338 ~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a 398 (439)
..++.+++..+........+.+.+-.+|+. -..+.|++|++||+|++.|..+.
T Consensus 182 ~~~l~i~~~~d~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~~i~ 234 (236)
T 3lr1_A 182 KTDLVILFQGEKGLFNPYGIMAVNPKKFPH--------VKYDLAMKLIDYVTGPEGLKIIS 234 (236)
T ss_dssp TBCCEEEEEC---CCEEEEEEEECTTTCTT--------SCHHHHHHHHHHHTSHHHHHHHH
T ss_pred CCCeEEEEcCCcceeeceeEEEECcccCCc--------cCHHHHHHHHHHhcCHHHHHHHh
Confidence 345677666555556666666666555431 01339999999999999998775
No 91
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=82.26 E-value=20 Score=31.69 Aligned_cols=109 Identities=16% Similarity=0.075 Sum_probs=55.1
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHh--hhhcccCc-h
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLA--NQVRLFDS-T 310 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~--~~v~~~~~-~ 310 (439)
+..||.....+++.+++. +.++|+||.. .+|++...... .....+.+.... ..+..+.+ .
T Consensus 121 ~~~p~~~~~~~~~~~~~~-------~i~~~~dL~g----~~i~~~~g~~~------~~~~~~~~~~~g~~~~~~~~~~~~ 183 (259)
T 2v25_A 121 FSEPYYQDAIGLLVLKEK-------KYKSLADMKG----ANIGVAQAATT------KKAIGEAAKKIGIDVKFSEFPDYP 183 (259)
T ss_dssp ECSCSEEEEEEEEEEGGG-------CCCSGGGCTT----CEEEEETTCSH------HHHHHHHHHHTTCCCEEEEESSHH
T ss_pred ccccceeCceEEEEeCCC-------CCCCHHHhCC----CEEEEecCCch------HHHHHHHHHhcCCceeEEEeCCHH
Confidence 444777778888998863 4678988743 13554321110 011112222211 12223333 4
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCC
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAAS 363 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a 363 (439)
+..+++.+|++.+++.+...+....++.+. +++.. ......+++++++.
T Consensus 184 ~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~k~~ 232 (259)
T 2v25_A 184 SIKAALDAKRVDAFSVDKSILLGYVDDKSE---ILPDS-FEPQSYGIVTKKDD 232 (259)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHTTTCCTTEE---ECSCC-CSEEEECCEEETTC
T ss_pred HHHHHHHcCCCcEEEecHHHHHHHHHhCCC---ccccc-cccceeEEEEcCCC
Confidence 677899999998888755443332222222 23321 11122356777764
No 92
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=82.05 E-value=4 Score=38.40 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=34.2
Q ss_pred CCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHHhhHHHH
Q 044097 339 SNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTARALPFK 398 (439)
Q Consensus 339 ~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e~q~~~a 398 (439)
.++.+++..+.......++.+..-.+|+. -..+.|++|++||+|++.|..+.
T Consensus 187 ~~l~i~~~gd~~l~n~y~~~~v~p~~~~~--------~~~~~a~~f~~~l~s~~~q~~i~ 238 (242)
T 3kn3_A 187 PPMVIVLEGDNTLKNFYSIMAVNPKRCEK--------ADYKGAKQFIDWIVSEKMQAEIA 238 (242)
T ss_dssp CSCEEEECCCGGGCCEEEEEEECTTTCTT--------SCHHHHHHHHHHHHSHHHHHHHH
T ss_pred CCeEEEEcCCcceEeeeEEEEECcccCCc--------cCHHHHHHHHHHHcCHHHHHHHH
Confidence 45676665544455555555555444321 01349999999999999999876
No 93
>4h1x_A PBP 2, phosphate-binding protein PSTS 2; periplasmic binding protein, PF12849 family; HET: MSE CIT; 1.77A {Streptococcus pneumoniae}
Probab=78.05 E-value=2.9 Score=39.79 Aligned_cols=27 Identities=11% Similarity=0.000 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 380 LIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 380 aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
++++||+|++|++.|....+ .|| .|..
T Consensus 117 ~vk~Fl~f~lS~~GQ~iv~~--~Gy-vPl~ 143 (265)
T 4h1x_A 117 LGQDFISFIHSKQGQQVVTD--NKF-IEAK 143 (265)
T ss_dssp HHHHHHHHHHBHHHHHHHHH--TTC-BCCC
T ss_pred HHHHHHHHHhhcccceeeec--CCc-EEec
Confidence 89999999999999987754 466 5543
No 94
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=77.74 E-value=26 Score=30.27 Aligned_cols=132 Identities=13% Similarity=0.025 Sum_probs=75.4
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhhhhcccCc-hHH
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDS-THY 312 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~~v~~~~~-~~~ 312 (439)
|..||.....+++++++.-. .+++++||-. .+|++...... .+.+......+..+.+ .+.
T Consensus 87 ~s~p~~~~~~~~~~~~~~~~-----~i~~~~dL~g----~~v~~~~g~~~----------~~~l~~~~~~~~~~~~~~~~ 147 (233)
T 1ii5_A 87 FTQPYFSSGIGLLIPGTATP-----LFRSVGDLKN----KEVAVVRDTTA----------VDWANFYQADVRETNNLTAA 147 (233)
T ss_dssp ECCCCEEEEEEEEEEGGGTT-----TCSSGGGGTT----CEEEEETTSHH----------HHHHHHTTCEEEEESSHHHH
T ss_pred EccceeecCeEEEEECCCCC-----CCCCHHHhCC----CeEEEECCccH----------HHHHHHcCCCeEEcCCHHHH
Confidence 55688777888899887521 4678888732 14665432110 1223332222333333 467
Q ss_pred HHHhhcCCeEEEEEccccHHHHHHcCC--CeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHh-
Q 044097 313 LKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCL- 389 (439)
Q Consensus 313 ~~~f~~Ge~~~~i~ws~~~~~~~~~~~--~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fll- 389 (439)
.+++.+|++.+++.+...+.....+.. .+.+ ++.. ......++++.++.+..+ ...++|+-+.
T Consensus 148 ~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~k~~~l~~------------~~~~~l~~l~~ 213 (233)
T 1ii5_A 148 ITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEV-TEIR-VSLEPYGFVLKENSPLQK------------TINVEMLNLLY 213 (233)
T ss_dssp HHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEE-CSCC-SEEEEEEEEEETTCTTHH------------HHHHHHHHHHH
T ss_pred HHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEE-eCcc-ccccceEEEEcCCchHHH------------HHHHHHHHHHh
Confidence 799999999888876665555554433 2332 2221 122234677888765444 7788888876
Q ss_pred cHHhhHHHH
Q 044097 390 QTARALPFK 398 (439)
Q Consensus 390 S~e~q~~~a 398 (439)
+.+.+..+.
T Consensus 214 ~g~~~~i~~ 222 (233)
T 1ii5_A 214 SRVIAEFTE 222 (233)
T ss_dssp TTHHHHHHH
T ss_pred CCcHHHHHH
Confidence 555555443
No 95
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=76.48 E-value=41 Score=29.81 Aligned_cols=109 Identities=14% Similarity=0.035 Sum_probs=62.4
Q ss_pred EEEeeee--cceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhh-hhcccC-
Q 044097 233 IWAAPYR--WGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLAN-QVRLFD- 308 (439)
Q Consensus 233 ~YgvP~~--~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~-~v~~~~- 308 (439)
.| .||. ....+++++++. ..+++++||-. .+|+....... .+.+..+.. .+..+.
T Consensus 109 ~~-~p~~~~~~~~~~~~~~~~------~~i~~~~dL~g----~~i~~~~g~~~----------~~~l~~~~~~~~~~~~~ 167 (268)
T 3qax_A 109 AL-LPYYGDEVQELMVVSKRS------LETPVLPLTQY----SSVAVQTGTYQ----------EHYLLSQPGICVRSFDS 167 (268)
T ss_dssp EE-EEEECCCBCEEEEEEETT------SCSCCCCGGGS----SCEEEETTSHH----------HHHHHTSTTCCEEEESC
T ss_pred ee-ecceecccceEEEEECCC------CCCCCHHHhCC----CEEEEecCcHH----------HHHHHhCCCceEEecCC
Confidence 37 8888 777888888875 15788888732 14665422110 122222211 222333
Q ss_pred chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEc-cCCCce-eeeeEEEEecC
Q 044097 309 STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV-PKSGAS-LWADLWAIPAA 362 (439)
Q Consensus 309 ~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~v-P~eG~~-~~~~~~aI~k~ 362 (439)
..+..+++.+|++.+++.+...+....++.+.+.+.- +-.... ....+++++++
T Consensus 168 ~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 223 (268)
T 3qax_A 168 TLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPNLVATRLELPPECWVLGCGLGVAKD 223 (268)
T ss_dssp HHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCBCCEEEEECTT
T ss_pred HHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCcEEecCccCcccccccEEEEEeCC
Confidence 3467789999999999988777766666666555432 211111 11246777776
No 96
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=74.46 E-value=18 Score=31.81 Aligned_cols=110 Identities=7% Similarity=0.004 Sum_probs=63.3
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccC-c
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFD-S 309 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~-~ 309 (439)
|..||.....+++++++.-. .+++++||.. +| +|+...... ..+.+.+..+. +..+. .
T Consensus 94 fs~p~~~~~~~~~~~~~~~~-----~i~~~~dL~~---~g~~v~~~~g~~----------~~~~l~~~~~~~~~~~~~~~ 155 (239)
T 3kbr_A 94 FSIPYLRDGKTPITLCSEEA-----RFQTLEQIDQ---PGVTAIVNPGGT----------NEKFARANLKKARILVHPDN 155 (239)
T ss_dssp ECSCSEEECEEEEEEGGGGG-----GGSSHHHHSS---TTCEEEECTTSH----------HHHHHHHHCSSSEEEECCCT
T ss_pred cchHHhccCcEEEEECCccc-----ccCCHHHhcC---CCcEEEEcCCCc----------HHHHHHHhCCCCceEEeCCH
Confidence 66688888888899887422 3688888864 24 455433211 11233333332 22333 3
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEec
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPA 361 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k 361 (439)
.+..+++.+|++.+++.+...+....++.+.+....+...-....-++++++
T Consensus 156 ~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 207 (239)
T 3kbr_A 156 VTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPR 207 (239)
T ss_dssp TTHHHHHHTTSCSEEEEEHHHHHHHHHHCTTEEECCCC-CCCCEEECCEECS
T ss_pred HHHHHHHHcCCcCEEEEchHHHHHHHHhCCCcEEecCCCCccccceEEEEcC
Confidence 4678999999998888877666666665555555433221112233566766
No 97
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=72.64 E-value=57 Score=29.74 Aligned_cols=88 Identities=11% Similarity=0.057 Sum_probs=53.2
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccCc-
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFDS- 309 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~~- 309 (439)
|..||.....+++.+++. .+++++||- | +|++...... ...+....+. +..+.+
T Consensus 126 ~s~p~~~~~~~~~~~~~~-------~i~~~~dL~-----g~~i~~~~g~~~----------~~~l~~~~~~~~~~~~~~~ 183 (292)
T 1xt8_A 126 FCSPYMKVALGVAVPKDS-------NITSVEDLK-----DKTLLLNKGTTA----------DAYFTQNYPNIKTLKYDQN 183 (292)
T ss_dssp ECCCCEEEEEEEEEETTC-------CCCSSGGGT-----TSEEEEETTSHH----------HHHHHHHCTTSEEEEESSH
T ss_pred eeccceecceEEEEECCC-------CCCCHHHhC-----CCEEEEeCCCcH----------HHHHHHhCCCceEEEcCCH
Confidence 566787778888988874 467888873 4 4665432110 1222222222 223333
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeE
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAV 343 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~ 343 (439)
.+..+++.+|++.+++.+...+....++.+.+.+
T Consensus 184 ~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~l~~ 217 (292)
T 1xt8_A 184 TETFAALMDKRGDALSHDNTLLFAWVKDHPDFKM 217 (292)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHHCTTEEE
T ss_pred HHHHHHHHcCCccEEEecHHHHHHHHHhCCCeEE
Confidence 4677899999999988877666665555555444
No 98
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=64.09 E-value=20 Score=35.05 Aligned_cols=34 Identities=18% Similarity=0.438 Sum_probs=24.4
Q ss_pred EEEeeeecceEEEEEeCccccc-CCC----------CCCCCcccc
Q 044097 233 IWAAPYRWGTMAIGYKKSKFQN-HNL----------APIEDWKDP 266 (439)
Q Consensus 233 ~YgvP~~~~~~vi~YNkd~~~~-~Gl----------~~P~TW~DL 266 (439)
+..+|+..+..+++||++-+.+ ..+ ..+++|.|+
T Consensus 96 l~~~pi~~d~lvvvvn~~~~~~~~~Lt~~ql~~If~g~i~~W~d~ 140 (350)
T 1pc3_A 96 LMNIALAISAQQVNYNLPGVSEHLKLNGKVLAAMYQGTIKTWDDP 140 (350)
T ss_dssp EEEEEEEEEEEEEEECCTTCCSCCEECHHHHHHHHHTSCCBTTCH
T ss_pred CEEeeEEeeeEEEEEeCCcccccccCCHHHHHHHhcCccccccch
Confidence 5679999999999999886531 001 146889985
No 99
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=63.12 E-value=87 Score=28.25 Aligned_cols=88 Identities=7% Similarity=-0.031 Sum_probs=50.6
Q ss_pred EEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHH--hhhhcccCc-
Q 044097 233 IWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALL--ANQVRLFDS- 309 (439)
Q Consensus 233 ~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l--~~~v~~~~~- 309 (439)
.|..||.....+++++++. ++++++||-. .+|++...... .....+.+... ...+..+.+
T Consensus 102 ~~s~p~~~~~~~l~~~~~~-------~i~sl~dL~g----~~v~~~~g~~~------~~~l~~~~~~~~~~~~~~~~~~~ 164 (287)
T 2vha_A 102 AFSDTIFVVGTRLLTKKGG-------DIKDFADLKG----KAVVVTSGTTS------EVLLNKLNEEQKMNMRIISAKDH 164 (287)
T ss_dssp EEEEEEEEEEEEEEEETTS-------SCCSGGGGTT----CEEEEETTSHH------HHHHHHHHHHTTCCCEEEEESSH
T ss_pred cccceeeecceEEEEECCC-------CCCCHHHcCC----CEEEEeCCCcH------HHHHHHHhhccCCCceEEEcCCH
Confidence 3778888888899999872 4688888742 14655321110 01111111111 112222333
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHc
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKR 337 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~ 337 (439)
.+..+++.+|++.+++.....+.....+
T Consensus 165 ~~~~~~L~~G~vDa~i~~~~~~~~~~~~ 192 (287)
T 2vha_A 165 GDSFRTLESGRAVAFMMDDALLAGERAK 192 (287)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHTT
T ss_pred HHHHHHHHcCCeeEEEeChHHHHHHHHh
Confidence 4677899999999888766665555554
No 100
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=60.97 E-value=42 Score=28.74 Aligned_cols=134 Identities=12% Similarity=-0.048 Sum_probs=70.2
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhhhhcccCc-hHH
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQVRLFDS-THY 312 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~~v~~~~~-~~~ 312 (439)
+..|+.....+++.+++.-.. ..+++|+||-. -+|++..... ..+.+.+..-.+..+.+ .+.
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~---~~~~~~~dL~g----~~i~~~~g~~----------~~~~l~~~~~~~~~~~~~~~~ 143 (228)
T 2pyy_A 81 FSLPIFASGLQIMVRNLESGT---GDIRSIDDLPG----KVVATTAGST----------AATYLREHHISVLEVPKIEEA 143 (228)
T ss_dssp ECSCSEEEEEEEEEEC--------CCCCSGGGCTT----CEEEEETTSH----------HHHHHHHTTCEEEEESSHHHH
T ss_pred ecccchhcceEEEEECCcccc---CCcCCHHHcCC----CeEEEEcCcH----------HHHHHHHcCCceEecCCHHHH
Confidence 455777777888888874211 14678888732 1466543211 11223322212223333 467
Q ss_pred HHHhhcCCeEEEEEccccHHHHHHcCC--CeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhc
Q 044097 313 LKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQ 390 (439)
Q Consensus 313 ~~~f~~Ge~~~~i~ws~~~~~~~~~~~--~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS 390 (439)
.+++.+|++.+++.....+.....+.. .+.+. +.. ......+++++++..-.+ ...++|+.+..
T Consensus 144 ~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~------------~~~~~l~~l~~ 209 (228)
T 2pyy_A 144 YKALQTKKADAVVFDAPVLLFYAANEGKGKVEIV-GSI-LREESYGIILPNNSPYRK------------PINQALLNLKE 209 (228)
T ss_dssp HHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEE-EEE-EEEEEECCEECTTCTTHH------------HHHHHHHHHHH
T ss_pred HHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEe-ccc-ccceeEEEEEeCChHHHH------------HHHHHHHHHHh
Confidence 789999999887776655555544433 34432 110 111223566766544333 77788888764
Q ss_pred -HHhhHHHH
Q 044097 391 -TARALPFK 398 (439)
Q Consensus 391 -~e~q~~~a 398 (439)
.+.+..+.
T Consensus 210 ~g~~~~i~~ 218 (228)
T 2pyy_A 210 NGTYQSLYD 218 (228)
T ss_dssp TTHHHHHHH
T ss_pred CCcHHHHHH
Confidence 45555443
No 101
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=60.37 E-value=87 Score=27.35 Aligned_cols=110 Identities=12% Similarity=0.029 Sum_probs=62.1
Q ss_pred EEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccCc
Q 044097 233 IWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFDS 309 (439)
Q Consensus 233 ~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~~ 309 (439)
.|..||.....+++++++.- ..+++++||.+ +| +|++..... ..+.+....+. +..+.+
T Consensus 83 ~~s~p~~~~~~~~~~~~~~~-----~~i~~~~dL~~---~g~~i~v~~g~~----------~~~~l~~~~~~~~~~~~~~ 144 (245)
T 3k4u_A 83 NFVEPYIVVGQSLLVKKGLE-----KGVKSYKDLDK---PELTLVTKFGVS----------AEYAAKRLFKNAKLKTYDT 144 (245)
T ss_dssp EECSCSEEECEEEEEETTTT-----TTCCSGGGGCC---SSCEEEEETTSH----------HHHHHHHHCSSSEEEEESS
T ss_pred CcchhhheeceEEEEECCcc-----cccCCHHHhcc---CCcEEEEeCCcH----------HHHHHHhhCCcCCEEEeCC
Confidence 36678888888999988842 25788999864 34 466543211 11233333232 223333
Q ss_pred -hHHHHHhhcCCeEEEEEccccHHHHHHcCC--CeeEEccCCCceeeeeEEEEecC
Q 044097 310 -THYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAA 362 (439)
Q Consensus 310 -~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~--~v~~~vP~eG~~~~~~~~aI~k~ 362 (439)
.+..+++.+|++.+++.+...+.....+.. .+.. ++.. ......++++.++
T Consensus 145 ~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~k~ 198 (245)
T 3k4u_A 145 EAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVH-LDTS-LTYEPLGWAIKKG 198 (245)
T ss_dssp HHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEE-ECCC-CSCEEECCEECTT
T ss_pred HHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceee-cCCC-cccccEEEEEcCC
Confidence 467789999999998887665555544332 2322 2221 1122335677775
No 102
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=60.12 E-value=60 Score=28.61 Aligned_cols=134 Identities=16% Similarity=0.071 Sum_probs=74.9
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccCc-h
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFDS-T 310 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~~-~ 310 (439)
|..||.....+++++++. ..+++++||-. .+|+...... ..+.+....+. +..+.+ .
T Consensus 102 ~s~p~~~~~~~~~~~~~~------~~i~~~~dL~g----~~i~v~~g~~----------~~~~l~~~~~~~~~~~~~~~~ 161 (249)
T 4f3p_A 102 FSDPYYDSGLAAMVQANN------TTIKSIDDLNG----KVIAAKTGTA----------TIDWIKAHLKPKEIRQFPNID 161 (249)
T ss_dssp ECSCCEEEEEEEEEETTC------CSCCSSGGGTT----SEEEEETTSH----------HHHHHHHHCCCSEEEEESSHH
T ss_pred eecceeeccEEEEEECCC------CCcCChHHhCC----CEEEEeCCCh----------HHHHHHhcCCCceEEEcCCHH
Confidence 556777778888888774 13678888732 1465543211 11233333222 223333 4
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHcCC--CeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHH
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKRMS--NVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFC 388 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~--~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fl 388 (439)
+..+++.+|++.+++.+...+....++.. ++.+.-+. .......++++++.+-.+ ...++|+-+
T Consensus 162 ~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~k~~~l~~------------~l~~~l~~l 227 (249)
T 4f3p_A 162 QAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAP--VSGDKYGIGFPKGSPLVA------------KVNAELARM 227 (249)
T ss_dssp HHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEE--EEEEEEEEEEETTCTHHH------------HHHHHHHHH
T ss_pred HHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCC--CCCccEEEEEcCCchHHH------------HHHHHHHHH
Confidence 57799999999988887776666655543 24432110 111223677888775333 666667666
Q ss_pred hcH-HhhHHHHhhcC
Q 044097 389 LQT-ARALPFKQEVI 402 (439)
Q Consensus 389 lS~-e~q~~~a~~~~ 402 (439)
... +.+..+ +++.
T Consensus 228 ~~~g~~~~i~-~k~~ 241 (249)
T 4f3p_A 228 KADGRYAKIY-KKWF 241 (249)
T ss_dssp HHHTHHHHHH-HHHH
T ss_pred HhCCcHHHHH-HHHc
Confidence 655 444443 4443
No 103
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=57.69 E-value=90 Score=26.68 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=50.5
Q ss_pred EEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccC-c
Q 044097 233 IWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFD-S 309 (439)
Q Consensus 233 ~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~-~ 309 (439)
.+..|+.....+++++++.- .+++++||-. .+|++..... ..+.+.+.... +..+. .
T Consensus 88 ~~s~p~~~~~~~~~~~~~~~------~~~~~~dL~g----~~i~~~~g~~----------~~~~l~~~~~~~~~~~~~~~ 147 (234)
T 3h7m_A 88 DFTPPHTIVYHAIFARRDSP------PAAGLEDLRG----RKVALHRDGI----------MHEYLAERGYGKDLVLTPTP 147 (234)
T ss_dssp EEEEEEEEEEEEEEEESSSC------CCSSGGGGTT----SCEEEETTSH----------HHHHHHTTTCGGGEEEESSH
T ss_pred CCCccccccceEEEEECCCC------CCCCHHHhCC----CEEEEEeCch----------HHHHHHhcCCCceEEEeCCH
Confidence 36778888888888888742 2688888732 1466543211 11223333222 22233 3
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHc
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKR 337 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~ 337 (439)
.+..+++.+|++.+++.+...+....++
T Consensus 148 ~~~~~~l~~g~vDa~~~~~~~~~~~~~~ 175 (234)
T 3h7m_A 148 ADALRLLAAGGCDYAVVAMVPGMYIIRE 175 (234)
T ss_dssp HHHHHHHHTTSSSEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHcCCceEEEeccHHHHHHHHh
Confidence 4677899999998888766655555444
No 104
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=56.01 E-value=1.1e+02 Score=27.27 Aligned_cols=131 Identities=17% Similarity=0.133 Sum_probs=71.6
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHh---hhhcccCc-
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLA---NQVRLFDS- 309 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~---~~v~~~~~- 309 (439)
|..||.....+++.+++. ++++++||-. .+|++...... ...+.+.. ..+..+.+
T Consensus 120 ~s~p~~~~~~~l~~~~~~-------~i~~~~dL~g----~~i~~~~g~~~----------~~~l~~~~~~~~~i~~~~~~ 178 (272)
T 2pvu_A 120 FSDPYFEATQVILVKQGS-------PVKNALDLKG----KTIGVQNATTG----------QEAAEKLFGKGPHIKKFETT 178 (272)
T ss_dssp ECSCCEEECEEEEEETTC-------CCCSGGGGTT----SCEEEETTSHH----------HHHHHHHHCSSTTEEEESSH
T ss_pred cchhhhccceEEEEECCC-------CCCCHHHhCC----CeEEEEcCchH----------HHHHHHhcCCCCeEEEcCCH
Confidence 556777777888888763 4688888732 14665432110 12222221 12233333
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHcCCC--eeEEccCCC-ceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHH
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSN--VAVVVPKSG-ASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIE 386 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~--v~~~vP~eG-~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~ 386 (439)
.+..+++.+|++.+++.....+....++... +.+. +... -......+++.++....+ ...++|+
T Consensus 179 ~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~k~~~l~~------------~l~~~l~ 245 (272)
T 2pvu_A 179 VVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVI-EDPKNFASEYYGMIFPKNSELKA------------KVDEALK 245 (272)
T ss_dssp HHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEE-CCTTTSCCEEECCEEETTCTTHH------------HHHHHHH
T ss_pred HHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEe-ccccccCCceEEEEEeCCHHHHH------------HHHHHHH
Confidence 4677899999998888776665555544332 4443 2211 112234577888722222 6666676
Q ss_pred HHhc-HHhhHHHH
Q 044097 387 FCLQ-TARALPFK 398 (439)
Q Consensus 387 fllS-~e~q~~~a 398 (439)
-+.. .+.+..+.
T Consensus 246 ~l~~~g~~~~i~~ 258 (272)
T 2pvu_A 246 NVINSGKYTEIYK 258 (272)
T ss_dssp HHHHTTHHHHHHH
T ss_pred HHHhCChHHHHHH
Confidence 6654 36655544
No 105
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=51.31 E-value=14 Score=34.55 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 380 LIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 380 aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
++++|++|++|++.|..+.++ .|| .|..
T Consensus 219 ~~~~F~~~~~s~~gq~~~~~~-~G~-~pl~ 246 (264)
T 4ecf_A 219 LTKAFITYVQSPAIQNTLVRQ-LGY-LSPD 246 (264)
T ss_dssp HHHHHHHHHHSHHHHTTHHHH-TTC-BCGG
T ss_pred HHHHHHHHHhCchhHHHHHHH-CCC-eeCC
Confidence 899999999999998644444 466 5543
No 106
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=51.04 E-value=17 Score=34.29 Aligned_cols=35 Identities=3% Similarity=0.052 Sum_probs=27.4
Q ss_pred eeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHHhcHH-hhHHHHh
Q 044097 353 WADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFCLQTA-RALPFKQ 399 (439)
Q Consensus 353 ~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fllS~e-~q~~~a~ 399 (439)
+...+++.++.++.. +|++|++|+.|++ +|..+.+
T Consensus 235 r~~~l~~~~~~~~s~------------aa~~Fi~~l~s~e~gq~i~~~ 270 (294)
T 3cvg_A 235 NPAHLLVGARAKNAE------------MAKEFAKWLVSKEGGQKVIEG 270 (294)
T ss_dssp EEEEEEEBSSCSSHH------------HHHHHHHHHHSTTTHHHHHHT
T ss_pred eEEEEEEeCCCCCHH------------HHHHHHHHHcCcHHHHHHHHH
Confidence 334555667766666 9999999999999 9988875
No 107
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=49.06 E-value=10 Score=24.18 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhcHH
Q 044097 379 PLIHQWIEFCLQTA 392 (439)
Q Consensus 379 ~aA~~FI~fllS~e 392 (439)
.+|++||+||++..
T Consensus 9 ~aakdFv~WL~ngk 22 (31)
T 3c5t_B 9 EAVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCC
Confidence 38999999999755
No 108
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=48.69 E-value=18 Score=33.83 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcHHhhHHHHhhcCCCCCCCc
Q 044097 380 LIHQWIEFCLQTARALPFKQEVIPGASPSA 409 (439)
Q Consensus 380 aA~~FI~fllS~e~q~~~a~~~~g~~~P~~ 409 (439)
++++|++|++|++.|..+.++ .|| .|..
T Consensus 219 ~~~~F~~~~~s~~gq~~~~~~-~G~-vpl~ 246 (265)
T 4exl_A 219 LAAEFLNFVLSDETQEGIVKG-LKY-IPIK 246 (265)
T ss_dssp HHHHHHHHHHSHHHHHTHHHH-TTC-BCGG
T ss_pred HHHHHHHHHhCcchHHHHHHh-CCC-ccCC
Confidence 899999999999999444444 465 5543
No 109
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=43.83 E-value=1.7e+02 Score=26.79 Aligned_cols=120 Identities=12% Similarity=0.079 Sum_probs=61.0
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCc-cccC-ceeeccChhHHHHhCCHHHHHHHHHHHhhhhc--ccC-
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWP-ELAG-RISMVNSPREVIVAGGKIAVQQNLALLANQVR--LFD- 308 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp-~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~~v~--~~~- 308 (439)
|..||.....+++++++. ..+++++||... ..+| +|+....... .....+.+......+. .+.
T Consensus 136 fs~P~~~~~~~i~~~~~~------~~i~~~~dL~~~~~~~g~~vg~~~gs~~------~~~l~~~~~~~~~~i~~~~~~~ 203 (294)
T 2rc8_A 136 FTSPFFSTSLGILVRTRG------TELSGIHDPKLHHPSQGFRFGTVRESSA------EDYVRQSFPEMHEYMRRYNVPA 203 (294)
T ss_dssp ECSCSEEEEEEEEEETTS------CCCCSTTCHHHHSCCTTCCEECBTTSHH------HHHHHHHCHHHHHHHGGGCBSS
T ss_pred EccchHhcceEEEEECCC------CCcCChhhhhhcCcccCeEEEEEcCChH------HHHHHHHHHHHHHHHHHhcCCC
Confidence 677888888889998763 146788887521 1223 4655432110 0111111111111121 122
Q ss_pred chHHHHHhhc--CCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCCCC
Q 044097 309 STHYLKAFGI--GDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRL 365 (439)
Q Consensus 309 ~~~~~~~f~~--Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~~ 365 (439)
..+..+++.+ |++.+++.....+.....+.....+.+-...-.....+++++++++.
T Consensus 204 ~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l 262 (294)
T 2rc8_A 204 TPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPL 262 (294)
T ss_dssp HHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTH
T ss_pred HHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHH
Confidence 3466788998 99988887666555555544333332211111122335778887543
No 110
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=40.78 E-value=1.8e+02 Score=25.08 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=63.5
Q ss_pred EEEeeee--cceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhh-hhcccCc
Q 044097 233 IWAAPYR--WGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLAN-QVRLFDS 309 (439)
Q Consensus 233 ~YgvP~~--~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~-~v~~~~~ 309 (439)
.| .||. ....+++.+++ . .+++++||-. .+|++..... ....+..+.. .+..+.+
T Consensus 89 ~~-~p~~~~~~~~~~~~~~~--~-----~i~~~~dL~g----~~i~v~~g~~----------~~~~l~~~~~~~~~~~~~ 146 (242)
T 3del_B 89 LM-IPYYGEEIKHLVLVFKG--E-----NKHPLPLTQY----RSVAVQTGTY----------QEAYLQSLSEVHIRSFDS 146 (242)
T ss_dssp EE-EEEEEEEESEEEEEEES--C-----CSCCCCGGGS----SCEEEETTSH----------HHHHHHHSTTCCEEEESS
T ss_pred cc-eeeeecCCceEEEEeCC--C-----CCCCHHHhCC----CEEEEEcCcH----------HHHHHHhCCCceEEEECC
Confidence 37 8888 66778888887 1 5788888732 1466543211 1122222211 2223333
Q ss_pred -hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEc-cCCCce-eeeeEEEEecCCCCcc
Q 044097 310 -THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVV-PKSGAS-LWADLWAIPAASRLET 367 (439)
Q Consensus 310 -~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~v-P~eG~~-~~~~~~aI~k~a~~~e 367 (439)
.+..+++.+|++.+++.+...+....++.+.+.+.- +-.... ....++++.++ +++
T Consensus 147 ~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~--~~~ 205 (242)
T 3del_B 147 TLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIDLPEDQWVLGYGIGVASD--RPA 205 (242)
T ss_dssp HHHHHHHHHTTSSSEEEECHHHHHHHGGGCTTEEEEEEECCGGGCEEEEEEEEETT--CHH
T ss_pred HHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCeEEecCccCcccccceEEEEEeCC--CHH
Confidence 467899999999998887766666666665555442 211111 11246778776 444
No 111
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=40.71 E-value=1.5e+02 Score=26.90 Aligned_cols=140 Identities=12% Similarity=0.087 Sum_probs=73.9
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccC--c-ccc-C-ceeec-cChhH-HHHhCCHHHHHHHHHHHhhhhcc
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWW--P-ELA-G-RISMV-NSPRE-VIVAGGKIAVQQNLALLANQVRL 306 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~d--p-~lk-g-kI~~~-~~~~~-~~~~~G~d~~~e~L~~l~~~v~~ 306 (439)
|..||.....+++++++. +.++|+||-- + .++ | +|++. .+... .+. +.+......+..
T Consensus 125 fs~p~~~~~~~~~~~~~~-------~~~~~~dl~~~~~~~l~~~~~vg~v~~~s~~~~l~--------~~~~~~~~~i~~ 189 (284)
T 2a5s_A 125 FSVPFVETGISVMVSRGT-------QVTGLSDKKFQRPHDYSPPFRFGTVPNGSTERNIR--------NNYPYMHQYMTR 189 (284)
T ss_dssp ECCCCEEECEEEEEETTC-------CCCSTTSHHHHSGGGSSSCCCEECCTTSHHHHHHH--------TTCHHHHHHHGG
T ss_pred eccCchhcCEEEEEECCc-------ccccccccccCChhHcCCCceEEEEeCCchHHHHH--------HHHHHHHHHHHh
Confidence 678988888889998763 4577777642 1 344 3 46643 22211 111 101111112223
Q ss_pred c--C-chHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE-c--cCCCceeeeeEEEEecCCCCcccccCCCCCCCHHH
Q 044097 307 F--D-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-V--PKSGASLWADLWAIPAASRLETKQIGGQVRGPSPL 380 (439)
Q Consensus 307 ~--~-~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~-v--P~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~a 380 (439)
| . ..+..+++.+|++.+++.....+....++.+...+. + +.. -.....+++++++++-.+ .
T Consensus 190 ~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~a~~k~~~l~~------------~ 256 (284)
T 2a5s_A 190 FNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYI-FATTGYGIALQKGSPWKR------------Q 256 (284)
T ss_dssp GCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCG-GGCEEECCEEETTCTTHH------------H
T ss_pred ccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCCEEEeCCccc-cccCceEEEecCCCHHHH------------H
Confidence 3 2 346788999999987777665555555554433332 2 110 111234678888764444 6
Q ss_pred HHHHHHHHhcHHhhHHHHhhc
Q 044097 381 IHQWIEFCLQTARALPFKQEV 401 (439)
Q Consensus 381 A~~FI~fllS~e~q~~~a~~~ 401 (439)
..++|.-+........+.+++
T Consensus 257 ln~~l~~l~~~g~~~~i~~kw 277 (284)
T 2a5s_A 257 IDLALLQFVGDGEMEELETLW 277 (284)
T ss_dssp HHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHh
Confidence 666776665443333444444
No 112
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=40.16 E-value=11 Score=36.16 Aligned_cols=31 Identities=6% Similarity=-0.308 Sum_probs=22.8
Q ss_pred CchHHHHHhhcCCeEEEEEccccHHHHHHcC
Q 044097 308 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRM 338 (439)
Q Consensus 308 ~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~ 338 (439)
...+...+|.+|++..++.|.........++
T Consensus 190 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~ 220 (341)
T 3un6_A 190 SPAEMPAALSEHRITGYSVAEPFGALGEKLG 220 (341)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHSS
T ss_pred ChHHHHHHHHcCCCCEEEecCCHHHHHHhcC
Confidence 3456778999999999888877665555544
No 113
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=38.02 E-value=2.1e+02 Score=25.09 Aligned_cols=145 Identities=14% Similarity=0.055 Sum_probs=72.6
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeec-cCh-hHHHHhCCHHHHHHHHHHHhh--hhcccCc
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMV-NSP-REVIVAGGKIAVQQNLALLAN--QVRLFDS 309 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~-~~~-~~~~~~~G~d~~~e~L~~l~~--~v~~~~~ 309 (439)
|..||.....+++++++. ++++++||.... .-+++.. .+. ...+...+.....+.+..+.. .+..+.+
T Consensus 102 fs~py~~~~~~~~~~~~~-------~i~~~~dL~g~~-~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (259)
T 3g3k_A 102 FSKPFMTLGISILYRKGT-------PIDSADDLAKQT-KIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKS 173 (259)
T ss_dssp ECSCSEEECEEEEEESSS-------SCCSHHHHHTCS-SSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESS
T ss_pred eeeeeeeCCEEEEEeCCc-------cccCHHHhccCC-CceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCC
Confidence 677888888899998863 468899985421 1124432 222 122322222222222222222 1223333
Q ss_pred -hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHHH
Q 044097 310 -THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEFC 388 (439)
Q Consensus 310 -~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~fl 388 (439)
.+..+++.+|+ .+++.....+..+.++..++..+-+.- .....+++++++.+-.+ ...+.|.-|
T Consensus 174 ~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~a~~k~~~l~~------------~in~~l~~l 238 (259)
T 3g3k_A 174 NEEGIQRVLTSD-YAFLMESTTIEFVTQRNCNLTQIGGLI--DSKGYGVGTPMGSPYRD------------KITLAILKL 238 (259)
T ss_dssp HHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTTEEEESSCS--SCEEECCEEETTCTHHH------------HHHHHHHHH
T ss_pred HHHHHHHHHhCC-eEEEechHHHHHHhcCCceEEEecccc--eeeeEEEEECCCCccHH------------HHHHHHHHH
Confidence 46778999999 555543333334444445555542211 11234678888765333 555666655
Q ss_pred hcH-HhhHHHHhhcC
Q 044097 389 LQT-ARALPFKQEVI 402 (439)
Q Consensus 389 lS~-e~q~~~a~~~~ 402 (439)
... +.+ .+.+++.
T Consensus 239 ~~~G~~~-~i~~kw~ 252 (259)
T 3g3k_A 239 QEQGKLH-MMKEKWW 252 (259)
T ss_dssp HHTC-CH-HHHHHHH
T ss_pred HhcChHH-HHHHhhc
Confidence 533 333 3334443
No 114
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=37.27 E-value=1.9e+02 Score=25.31 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=58.4
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccC-ceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccCc-
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAG-RISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFDS- 309 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkg-kI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~~- 309 (439)
|..||.....+++++++-.. .+++++|| +| +|+...... ..+.+.+..+. +..+.+
T Consensus 94 fs~py~~~~~~~~v~~~~~~-----~~~~~~dl-----~g~~i~v~~g~~----------~~~~l~~~~~~~~i~~~~~~ 153 (243)
T 4h5g_A 94 FSIPYYENKISFLVHKADVE-----KYKDLTSL-----ESANIAAQKGTV----------PESMVKEQLPKAQLTSLTNM 153 (243)
T ss_dssp ECSCSBCCCEEEEEEGGGTT-----TCCSHHHH-----HTSEEEEETTSH----------HHHHHHHHCTTSEEEEESCH
T ss_pred ccCccccCcccccccccccc-----cccccccC-----CCCEEEecCCcH----------HHHHHHHhcccceeEEeCCH
Confidence 66788888888888775322 35666665 34 355543211 11333333333 333443
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE-ccCCCceeeeeEEEEecCC
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV-VPKSGASLWADLWAIPAAS 363 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~-vP~eG~~~~~~~~aI~k~a 363 (439)
.+..+++.+|++.+++.....+.....+.+..... ++..-......++++.++.
T Consensus 154 ~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~ 208 (243)
T 4h5g_A 154 GEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNS 208 (243)
T ss_dssp HHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSC
T ss_pred HHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCC
Confidence 46778999999987776544444444555544442 1111111112357788763
No 115
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=35.25 E-value=22 Score=22.96 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhcHH
Q 044097 379 PLIHQWIEFCLQTA 392 (439)
Q Consensus 379 ~aA~~FI~fllS~e 392 (439)
.+|++||+||++..
T Consensus 17 ~aak~fl~wL~~~k 30 (33)
T 2l63_A 17 LAARDFINWLIQTK 30 (33)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCC
Confidence 38999999998743
No 116
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=34.98 E-value=2.1e+02 Score=25.25 Aligned_cols=90 Identities=13% Similarity=0.006 Sum_probs=50.6
Q ss_pred EEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhH--HHHhCCHHHHHHHHHHHhh--hhcccC
Q 044097 233 IWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPRE--VIVAGGKIAVQQNLALLAN--QVRLFD 308 (439)
Q Consensus 233 ~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~--~~~~~G~d~~~e~L~~l~~--~v~~~~ 308 (439)
.|..||.....+++.+++. .+++++||-. .+|++...... .+...+ +.+....+ .+..+.
T Consensus 99 ~fs~p~~~~~~~~~~~~~~-------~i~~~~dL~g----~~i~v~~g~~~~~~l~~~~-----~~~~~~~~~~~~~~~~ 162 (268)
T 3hv1_A 99 DFTEPYMVNEQVLVTKKSS-------GIDSVAGMAG----KTLGAQAGSSGYDAFNASP-----KILKDVVANQKVVQYS 162 (268)
T ss_dssp EECCCCEEECEEEEEEGGG-------CCCSSGGGTT----CCEEEETTCHHHHHHHHCT-----TTTTTTSGGGCEEEES
T ss_pred cCcHHHeeCceEEEEECCC-------CCCCHHHhCC----CEEEEEeCCchHHHHHHhh-----HHHhhhcccceEEEeC
Confidence 3666888888889998875 3688888732 24665432211 011000 00011111 122233
Q ss_pred -chHHHHHhhcCCeEEEEEccccHHHHHHcC
Q 044097 309 -STHYLKAFGIGDVWVAVGWSSDVLPAVKRM 338 (439)
Q Consensus 309 -~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~ 338 (439)
..+..+++.+|++.+++.+...+....++.
T Consensus 163 ~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~ 193 (268)
T 3hv1_A 163 TFTQALIDLNSGRIDGLLIDRVYANYYLEKS 193 (268)
T ss_dssp SHHHHHHHHHHTSCSEEEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCEEEeCHHHHHHHHHhC
Confidence 346788999999999888776665555543
No 117
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=34.34 E-value=2.1e+02 Score=24.03 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=49.6
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccCc-h
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFDS-T 310 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~~-~ 310 (439)
|..||.....+++.+++.- .+++|+||-. .+|++..... ..+.+.+..+. +..+.+ .
T Consensus 81 ~~~p~~~~~~~~~~~~~~~------~i~~~~dL~g----~~i~~~~g~~----------~~~~l~~~~~~~~~~~~~~~~ 140 (226)
T 1wdn_A 81 FSDGYYKSGLLVMVKANNN------DVKSVKDLDG----KVVAVKSGTG----------SVDYAKANIKTKDLRQFPNID 140 (226)
T ss_dssp ECSCCEEEEEEEEEETTCC------SCSSSTTTTT----CEEEEETTSH----------HHHHHHHHCCCSEEEEESSHH
T ss_pred cccchhcCceEEEEeCCCC------CCCCHHHhCC----CEEEEEcCCc----------HHHHHHHhCCCceEEEeCCHH
Confidence 5557777788888888741 2678888732 1466543211 01223333222 222333 4
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHcC
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKRM 338 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~~ 338 (439)
+..+++.+|++.+++.+...+.....+.
T Consensus 141 ~~~~~l~~g~vDa~~~~~~~~~~~~~~~ 168 (226)
T 1wdn_A 141 NAYMELGTNRADAVLHDTPNILYFIKTA 168 (226)
T ss_dssp HHHHHHHTTSCSEEEEEHHHHHHHHHTT
T ss_pred HHHHHHHcCCcCEEEeCcHHHHHHHHhC
Confidence 6778999999988887766655555544
No 118
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=33.61 E-value=23 Score=22.15 Aligned_cols=11 Identities=0% Similarity=0.398 Sum_probs=10.0
Q ss_pred HHHHHHHHHhc
Q 044097 380 LIHQWIEFCLQ 390 (439)
Q Consensus 380 aA~~FI~fllS 390 (439)
+|++||+||++
T Consensus 18 aak~fv~wL~~ 28 (29)
T 2g49_C 18 RAQDFVQWLMN 28 (29)
T ss_pred HHHHHHHHHhc
Confidence 89999999986
No 119
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=32.45 E-value=25 Score=23.55 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhcHH
Q 044097 379 PLIHQWIEFCLQTA 392 (439)
Q Consensus 379 ~aA~~FI~fllS~e 392 (439)
.+|++||+||++..
T Consensus 17 ~aak~fv~wL~~~k 30 (39)
T 1jrj_A 17 EAVRLFIEWLKNGG 30 (39)
T ss_dssp HHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHcCC
Confidence 38999999999754
No 120
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=31.58 E-value=25 Score=22.19 Aligned_cols=11 Identities=9% Similarity=0.359 Sum_probs=10.0
Q ss_pred HHHHHHHHHhc
Q 044097 380 LIHQWIEFCLQ 390 (439)
Q Consensus 380 aA~~FI~fllS 390 (439)
+|++||+||++
T Consensus 18 ~ak~fv~wLl~ 28 (30)
T 1t5q_A 18 HQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 89999999986
No 121
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=29.95 E-value=30 Score=21.87 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcH
Q 044097 379 PLIHQWIEFCLQT 391 (439)
Q Consensus 379 ~aA~~FI~fllS~ 391 (439)
.+|++|++||++.
T Consensus 17 ~~ak~Fv~wL~~~ 29 (31)
T 3iol_B 17 QAAKEFIAWLVKG 29 (31)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcc
Confidence 4899999999863
No 122
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=28.38 E-value=36 Score=31.95 Aligned_cols=85 Identities=11% Similarity=0.021 Sum_probs=56.6
Q ss_pred CchHHHHHhhcCCeEEEEEccccHHHHHHcCCC-e--eEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHH
Q 044097 308 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSN-V--AVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQW 384 (439)
Q Consensus 308 ~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~-v--~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~F 384 (439)
...+....+..|++.+++.+...+... +-+ . ..++.. ...-+...+++-++-++.+ ..++|
T Consensus 157 ~aaql~~al~dg~vDaavin~n~a~~a---gl~p~~dal~~E~-~~~~y~n~i~vr~~~~~~~------------~~k~l 220 (246)
T 4ef1_A 157 DPAIMTTLYDNEEGAAVLINSNFAVDQ---GLNPKKDAIALEK-ESSPYANIIAVRKEDENNE------------NVKKL 220 (246)
T ss_dssp CGGGHHHHHHTTCSSEEEECHHHHHHT---TCCHHHHCSEECS-CCGGGCEEEEEEGGGTTCH------------HHHHH
T ss_pred CHHHHHHHhccccccEEEEechHHHHc---CCCCccCceEEcC-CCCCeEEEEEEeccccCCH------------HHHHH
Confidence 345667889999988888776544431 111 1 122221 1234566788888777766 99999
Q ss_pred HHHHhcHHhhHHHHhhcCCCCCCC
Q 044097 385 IEFCLQTARALPFKQEVIPGASPS 408 (439)
Q Consensus 385 I~fllS~e~q~~~a~~~~g~~~P~ 408 (439)
++-+-|+|++.-+.+++.|...|.
T Consensus 221 v~~~~s~~v~~~i~~~~~g~~~p~ 244 (246)
T 4ef1_A 221 VKVLRSKEVQDWITKKWNGAIVPV 244 (246)
T ss_dssp HHHHHSHHHHHHHHHHTTTSSEEC
T ss_pred HHHHcCHHHHHHHHHHcCCcEeeC
Confidence 999999999998887765555543
No 123
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=28.07 E-value=3e+02 Score=24.07 Aligned_cols=128 Identities=7% Similarity=-0.015 Sum_probs=69.4
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhh--------hhc
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLAN--------QVR 305 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~--------~v~ 305 (439)
|.-||.....+++++++.- ..+++++||-. .+|+....... .+.+....+ .+.
T Consensus 108 fs~p~~~~~~~~~~~~~~~-----~~i~~~~dL~g----~~v~v~~g~~~----------~~~l~~~~~~~g~~~~~~~~ 168 (259)
T 4dz1_A 108 FSEPYYINSFYLVSMANHK-----ITLNNLNELNK----YSIGYPRGMAY----------SDLIKNDLEPKGYYSLSKVK 168 (259)
T ss_dssp ECCCSEEEEEEEEEETTSC-----CCCCSGGGGGG----SCEEEETTSTH----------HHHHHHHTGGGTSCCGGGCE
T ss_pred cccchhhCceEEEEEcCCC-----CCCCCHHHhCC----CEEEEeCCcHH----------HHHHHHhcccccccccceeE
Confidence 5668877788888887632 14688888732 14665432110 112222211 222
Q ss_pred ccCc-hHHHHHhhcCCeEEEEEccccHHHHHHc-CCCeeEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHH
Q 044097 306 LFDS-THYLKAFGIGDVWVAVGWSSDVLPAVKR-MSNVAVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQ 383 (439)
Q Consensus 306 ~~~~-~~~~~~f~~Ge~~~~i~ws~~~~~~~~~-~~~v~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~ 383 (439)
.+.+ .+..+++.+|++.+++.....+.....+ +.++....+. ......++++.++. + ....
T Consensus 169 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~k~~---~------------l~~~ 231 (259)
T 4dz1_A 169 LYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVF--KNVDQLGIAFKKGS---P------------VRDD 231 (259)
T ss_dssp EESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEE--EEEEEEEEEEETTC---H------------HHHH
T ss_pred ecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeeccc--CCCceEEEEEeCCh---H------------HHHH
Confidence 3333 4677899999999888766555444433 3344332110 11123367788765 4 6666
Q ss_pred HHHHHhcHHhhHHHH
Q 044097 384 WIEFCLQTARALPFK 398 (439)
Q Consensus 384 FI~fllS~e~q~~~a 398 (439)
|=+++.+ +....+.
T Consensus 232 ln~~l~~-~g~~~l~ 245 (259)
T 4dz1_A 232 FNLWLKE-QGPQKIS 245 (259)
T ss_dssp HHHHHHH-HCHHHHH
T ss_pred HHHHHHh-CCCeehH
Confidence 6666655 4444443
No 124
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=27.68 E-value=3.6e+02 Score=24.77 Aligned_cols=36 Identities=14% Similarity=0.083 Sum_probs=24.3
Q ss_pred CchHHHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE
Q 044097 308 DSTHYLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV 344 (439)
Q Consensus 308 ~~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~ 344 (439)
...+...+|.+|++.+++.|.........++ ...++
T Consensus 166 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~-~~~~l 201 (324)
T 3ksx_A 166 SPANARAAFAAGQVDAWAIWDPWYSALTLDG-SARLL 201 (324)
T ss_dssp CHHHHHHHHHTTCCSEEEEETTHHHHHHHTT-SEEEE
T ss_pred CHHHHHHHHHcCCCCEEEEccHHHHHHHhcC-CcEEE
Confidence 3456778999999999888877665544432 34444
No 125
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=27.51 E-value=68 Score=28.66 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcHHhhHHHHhhcCCCCCCC
Q 044097 380 LIHQWIEFCLQTARALPFKQEVIPGASPS 408 (439)
Q Consensus 380 aA~~FI~fllS~e~q~~~a~~~~g~~~P~ 408 (439)
++..|++|+.+.+.|..+.+ .|+ .|.
T Consensus 251 ~~~~f~~~l~~~~~q~~~~~--~g~-~p~ 276 (290)
T 1twy_A 251 QTKEFIAFLKSESAKKLIVE--YGY-IMP 276 (290)
T ss_dssp HHHHHHHHHHSHHHHHHHHH--TTC-BCC
T ss_pred HHHHHHHHHhCHHHHHHHHH--CCC-ccC
Confidence 89999999999999988765 355 443
No 126
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=25.34 E-value=35 Score=23.19 Aligned_cols=14 Identities=7% Similarity=0.211 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcHH
Q 044097 379 PLIHQWIEFCLQTA 392 (439)
Q Consensus 379 ~aA~~FI~fllS~e 392 (439)
.+|++||+||++..
T Consensus 17 ~~akdFv~WL~~~k 30 (42)
T 2b4n_A 17 IHQQDFVNWLLAQK 30 (42)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 38999999998654
No 127
>4got_A Methionine-binding lipoprotein METQ; NLPA lipoprotein, PF03180 family, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.95A {Bacillus subtilis subsp}
Probab=24.09 E-value=56 Score=30.68 Aligned_cols=85 Identities=11% Similarity=0.022 Sum_probs=53.2
Q ss_pred hHHHHHhhcCCeEEEEEccccHHHHHHcCCCe--eEEccCCCceeeeeEEEEecCCCCcccccCCCCCCCHHHHHHHHHH
Q 044097 310 THYLKAFGIGDVWVAVGWSSDVLPAVKRMSNV--AVVVPKSGASLWADLWAIPAASRLETKQIGGQVRGPSPLIHQWIEF 387 (439)
Q Consensus 310 ~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v--~~~vP~eG~~~~~~~~aI~k~a~~~e~~~~~~~~~~~~aA~~FI~f 387 (439)
.+....+..+++.+++.+...+... ...+. .+.+.......+...+++-++-++.+ ..++|++-
T Consensus 161 aql~r~l~d~~vD~avin~n~a~~a--gl~p~~dal~~E~~~~~py~Nvivvr~~d~d~~------------~ik~lv~a 226 (249)
T 4got_A 161 ELTAKAYENKEGDAVFINVNYAIQN--KLNPKKDAIEVESTKNNPYANIIAVRKGEEDSA------------KIKALMEV 226 (249)
T ss_dssp TTHHHHHHTTCSSEEEECHHHHHHT--TCCHHHHCSEECCSTTCCCCEEEEEETTCTTSH------------HHHHHHHH
T ss_pred hHhhhhcccccccEEEechhHHHHc--CCChhhhhhcccCCCCCceEEEEEEcccccCCH------------HHHHHHHH
Confidence 3456778877766666655444321 00111 11222111234566778888777766 89999999
Q ss_pred HhcHHhhHHHHhhcCCCCCCC
Q 044097 388 CLQTARALPFKQEVIPGASPS 408 (439)
Q Consensus 388 llS~e~q~~~a~~~~g~~~P~ 408 (439)
+-|+|++.-+.+++.|...|.
T Consensus 227 ~~s~evk~~I~~~y~G~~vP~ 247 (249)
T 4got_A 227 LHSKKIKDFIEKKYDGAVLPV 247 (249)
T ss_dssp HTSHHHHHHHHHHTTTSSEEC
T ss_pred HCCHHHHHHHHHHcCCEEEeC
Confidence 999999998887776665554
No 128
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=23.73 E-value=1.4e+02 Score=25.73 Aligned_cols=136 Identities=14% Similarity=0.104 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCeEEEEEeeecccccccceEecCchhHHHHHHCCCcc-cccccccchhhcccchhHHHhhhcCCCccc
Q 044097 149 QSWVKDFMRSQGKRLKFQMNLCASIDGIVNNLSTPFNKLSFAIKKRFIE-PIAEAEDQDWFKRLSHKWKVYLRSNDAGEI 227 (439)
Q Consensus 149 ~~li~~Fek~~GI~V~~~~~~~~s~~~~~~dv~~~~~~~~~~i~~Gll~-pl~~~~~~~~~~~i~~~~~~~l~~~~~~~~ 227 (439)
-++++.+.++.|++++++ .. .... ...+.++|-+. =+.. +..-.++
T Consensus 31 ~dl~~~i~~~~g~~~~~~--~~-~~~~-----------~~~~l~~g~~D~~~~~------~~~~~~r------------- 77 (237)
T 3kzg_A 31 IDLMQEICRRLHATCTFE--AY-IFDD-----------LFPALKNREVDLVIAS------MIITDER------------- 77 (237)
T ss_dssp HHHHHHHHHHTTCEEEEE--EE-CGGG-----------HHHHHHTTSSSEECSS------CBCCTTG-------------
T ss_pred HHHHHHHHHHhCCceEEE--Ec-CHHH-----------HHHHHhCCCCCEEEEc------cccChhH-------------
Confidence 478999999999999987 22 2222 23344555432 1111 0000111
Q ss_pred CCCCCEEEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhh--hhc
Q 044097 228 DPRGKIWAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLAN--QVR 305 (439)
Q Consensus 228 D~dGk~YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~--~v~ 305 (439)
. ..-.|..||.....+++++++. ++++++||-. .+|++..... . .+.+.+..+ ++.
T Consensus 78 ~-~~~~fs~p~~~~~~~~~~~~~~-------~~~~~~dL~g----~~i~~~~g~~---------~-~~~~~~~~~~~~~~ 135 (237)
T 3kzg_A 78 K-KHFIFSLPYMESNSQYITTVDS-------KISTFDDLHG----KKIGVRKGTP---------Y-ARQVLSENRNNQVI 135 (237)
T ss_dssp G-GTCEECCCSBCCEEEEEEETTC-------SCCSGGGGTT----CEEEEETTST---------H-HHHHHHTCSSCEEE
T ss_pred h-ccceeeeeeeecceEEEEECCC-------CCCCHHHhCC----CEEEEecCCH---------H-HHHHHHhCCCCcEE
Confidence 0 0223667888888899998863 4688888743 2466543211 0 112222222 222
Q ss_pred ccC-chHHHHHhhcCCeEEEEEccccHHHHHHcCC
Q 044097 306 LFD-STHYLKAFGIGDVWVAVGWSSDVLPAVKRMS 339 (439)
Q Consensus 306 ~~~-~~~~~~~f~~Ge~~~~i~ws~~~~~~~~~~~ 339 (439)
.+. ..+..+++.+|++.+++.+...+....++.+
T Consensus 136 ~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~ 170 (237)
T 3kzg_A 136 FYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEP 170 (237)
T ss_dssp EESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSS
T ss_pred EeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCC
Confidence 333 3467789999999988887766666665544
No 129
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=23.06 E-value=42 Score=28.00 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=18.0
Q ss_pred Cceeeccccceee-----------EEeeccccCCCCCCCC
Q 044097 30 PRLRVSDKQCSIK-----------TIRLSRTHINPTAHND 58 (439)
Q Consensus 30 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~ 58 (439)
|..++.||.||=+ ++++...|.||+..+.
T Consensus 44 p~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng 83 (119)
T 1ujx_A 44 PLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV 83 (119)
T ss_dssp TTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSS
T ss_pred CCcccccccccceeEEEEEecCCCEEEEEEcccCCcEECC
Confidence 3445556555533 4556677888887765
No 130
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=21.31 E-value=4.2e+02 Score=23.28 Aligned_cols=108 Identities=14% Similarity=0.026 Sum_probs=61.1
Q ss_pred EEeeeecceEEEEEeCcccccCCCCCCCCcccccCccccCceeeccChhHHHHhCCHHHHHHHHHHHhhh--hcccCc-h
Q 044097 234 WAAPYRWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPELAGRISMVNSPREVIVAGGKIAVQQNLALLANQ--VRLFDS-T 310 (439)
Q Consensus 234 YgvP~~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~lkgkI~~~~~~~~~~~~~G~d~~~e~L~~l~~~--v~~~~~-~ 310 (439)
|..||.....+++++++. ..+++++||-. .+|++..... ..+.+.+..+. +..+.+ .
T Consensus 111 fs~p~~~~~~~l~~~~~~------~~i~~~~dL~g----~~i~v~~g~~----------~~~~l~~~~~~~~~~~~~~~~ 170 (267)
T 3mpk_A 111 FSRPYVRNGMVIVTRQDP------DAPVDADHLDG----RTVALVRNSA----------AIPLLQRRYPQAKVVTADNPS 170 (267)
T ss_dssp ECSCSEEECEEEEEESST------TSCSSGGGCTT----CEEEEETTCT----------HHHHHHHHCTTSEEEEESSHH
T ss_pred echhhccCceEEEEECCC------CCCCCHHHHCC----CEEEEeCCch----------hHHHHHHhCCCcEEEEeCCHH
Confidence 566888888889998873 14678888742 2466543211 11223333222 223333 4
Q ss_pred HHHHHhhcCCeEEEEEccccHHHHHHc--CCCeeEEccCCCceeeeeEEEEecC
Q 044097 311 HYLKAFGIGDVWVAVGWSSDVLPAVKR--MSNVAVVVPKSGASLWADLWAIPAA 362 (439)
Q Consensus 311 ~~~~~f~~Ge~~~~i~ws~~~~~~~~~--~~~v~~~vP~eG~~~~~~~~aI~k~ 362 (439)
+..+++.+|++.+++.....+....++ ..++.+.-+.. .....-++++.++
T Consensus 171 ~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~k~ 223 (267)
T 3mpk_A 171 EAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALD-LPPAEIALATTRG 223 (267)
T ss_dssp HHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECS-SCCEEEEEEEETT
T ss_pred HHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccC-CCceeEEEEEcCC
Confidence 677899999998888776555554443 23455542211 1112336777776
No 131
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=20.41 E-value=3.6e+02 Score=25.55 Aligned_cols=139 Identities=13% Similarity=-0.018 Sum_probs=72.9
Q ss_pred ecceEEEEEeCcccccCCCCCCCCcccccCcc--ccCceeeccChhHHHHhCCH-HHHHHHHHHHhh---hhcccCc-hH
Q 044097 239 RWGTMAIGYKKSKFQNHNLAPIEDWKDPWWPE--LAGRISMVNSPREVIVAGGK-IAVQQNLALLAN---QVRLFDS-TH 311 (439)
Q Consensus 239 ~~~~~vi~YNkd~~~~~Gl~~P~TW~DL~dp~--lkgkI~~~~~~~~~~~~~G~-d~~~e~L~~l~~---~v~~~~~-~~ 311 (439)
.....+|+.+++. +.+|++||.... -.+++.+..... ++. .-+.+.|.+... ....|.+ .+
T Consensus 109 ~~~~~~lvv~~ds-------~~~sl~dL~~~ak~~p~~~~~g~~g~-----Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~ 176 (312)
T 2f5x_A 109 VDVPMTIIARGDF-------PPNNIKELAEYVKKNADKISLANAGI-----GAASHLCGTMLVEALGVNLLTIPYKGTAP 176 (312)
T ss_dssp EEEEEEEEECTTC-------SCCSHHHHHHHHHHHGGGCEEEESST-----TSHHHHHHHHHHHHHTCCCEEEECSSHHH
T ss_pred ccCcEEEEEeCCC-------CCCCHHHHHHHHHhCCCceEEeCCCC-----CcHHHHHHHHHHHHHCCCeEEeccCChHH
Confidence 3446678888773 679999997631 124444322100 011 111122221111 1112443 46
Q ss_pred HHHHhhcCCeEEEEEccccHHHHHHcCCCeeEE----------ccC-----C-Cc----eeeeeEEEEecCCCCcccccC
Q 044097 312 YLKAFGIGDVWVAVGWSSDVLPAVKRMSNVAVV----------VPK-----S-GA----SLWADLWAIPAASRLETKQIG 371 (439)
Q Consensus 312 ~~~~f~~Ge~~~~i~ws~~~~~~~~~~~~v~~~----------vP~-----e-G~----~~~~~~~aI~k~a~~~e~~~~ 371 (439)
...++..|++.+++...+.+....+.+ ++..+ +|. | |. .....+++++++.+..-
T Consensus 177 a~~aL~~G~VD~~~~~~~~~~~~i~~g-~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~v---- 251 (312)
T 2f5x_A 177 AMNDLLGKQVDLMCDQTTNTTQQITSG-KVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPV---- 251 (312)
T ss_dssp HHHHHHTTSSCEEEEEHHHHHHHHHTT-SSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHH----
T ss_pred HHHHHHcCCccEEEechHHHHHHHHcC-CeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHH----
Confidence 778999999998887666555555443 33321 121 1 21 11123567888875321
Q ss_pred CCCCCCHHHHHHHHHHHhcHHhhHHHHh
Q 044097 372 GQVRGPSPLIHQWIEFCLQTARALPFKQ 399 (439)
Q Consensus 372 ~~~~~~~~aA~~FI~fllS~e~q~~~a~ 399 (439)
.......+.+-+-+++.++.+.+
T Consensus 252 -----v~~l~~al~~~~~~p~~~~~~~~ 274 (312)
T 2f5x_A 252 -----VDKLVKSLQAGLADPKFQERMKQ 274 (312)
T ss_dssp -----HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCHHHHHHHHH
Confidence 01145566777789999988864
Done!