BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044098
(201 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GT6|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GT6|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GUF|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 103
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDD-QENGRRYST- 157
KE+ N+ +L D+PG+ + V + + I+GE +SES + RRY +
Sbjct: 13 KEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGE---RKSESSTETERFSRIERRYGSF 69
Query: 158 --RIDLPSNLYKFDDIKAGMKNGVLKIVVPK 186
R LP + D I A +NGVL+I +PK
Sbjct: 70 HRRFALPDSA-DADGITAAGRNGVLEIRIPK 99
>pdb|3GLA|A Chain A, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
pdb|3GLA|B Chain B, Crystal Structure Of The Hspa From Xanthomonas Axonopodis
Length = 100
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDD-QENGRRYST- 157
KE+ N+ +L D+PG+ + V + + I+GE +SES + RRY +
Sbjct: 10 KEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGE---RKSESSTETERFSRIERRYGSF 66
Query: 158 --RIDLPSNLYKFDDIKAGMKNGVLKIVVPK 186
R LP + D I A +NGVL+I +PK
Sbjct: 67 HRRFALPDSA-DADGITAAGRNGVLEIRIPK 96
>pdb|3AAB|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAB|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form I Crystal
pdb|3AAC|A Chain A, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
pdb|3AAC|B Chain B, Small Heat Shock Protein Hsp14.0 With The Mutations Of
I120f And I122f In The Form Ii Crystal
Length = 123
Score = 34.3 bits (77), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 101 EDDNNLILKMDMPGLSKEDVRVSVQ-QNTQIIKGEGPQNESESGGGDDDQENGRRYSTR- 158
E+ L++ D+ G +KE ++ V QN II+ E + E G +Y T+
Sbjct: 31 EEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAE-----------REITEPGVKYLTQR 79
Query: 159 -------IDLPSNLYKFDDIKAGMKNGVLKIVVP 185
I LP N+ K +I +NGVL I +P
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113
>pdb|3VQL|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQL|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant
pdb|3VQM|A Chain A, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|B Chain B, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|C Chain C, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|D Chain D, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|E Chain E, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|F Chain F, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|G Chain G, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|H Chain H, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|I Chain I, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|J Chain J, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|K Chain K, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|L Chain L, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|M Chain M, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
pdb|3VQM|N Chain N, Small Heat Shock Protein Hsp14.0 Of C-Terminal Deletion
Variant With C-Terminal Peptide
Length = 115
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 101 EDDNNLILKMDMPGLSKEDVRVSVQ-QNTQIIKGEGPQNESESGGGDDDQENGRRYSTR- 158
E+ L++ D+ G +KE ++ V QN II+ E + E G +Y T+
Sbjct: 31 EEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAE-----------REITEPGVKYLTQR 79
Query: 159 -------IDLPSNLYKFDDIKAGMKNGVLKIVVP 185
I LP N+ K +I +NGVL I +P
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113
>pdb|3VQK|A Chain A, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|B Chain B, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|C Chain C, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|D Chain D, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|E Chain E, Small Heat Shock Protein Hsp14.0 Of Wild Type
pdb|3VQK|F Chain F, Small Heat Shock Protein Hsp14.0 Of Wild Type
Length = 123
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 20/94 (21%)
Query: 101 EDDNNLILKMDMPGLSKEDVRVSVQ-QNTQIIKGEGPQNESESGGGDDDQENGRRYSTR- 158
E+ L++ D+ G +KE ++ V QN II+ E + E G +Y T+
Sbjct: 31 EEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAE-----------REITEPGVKYLTQR 79
Query: 159 -------IDLPSNLYKFDDIKAGMKNGVLKIVVP 185
I LP N+ K +I +NGVL I +P
Sbjct: 80 PKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIP 113
>pdb|3L1F|A Chain A, Bovine Alphaa Crystallin
Length = 103
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 96 GWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRY 155
G + D + ++ +D+ S ED+ V VQ++ ++ G NE + G +E RRY
Sbjct: 1 GSEVRSDRDKFVIFLDVKHFSPEDLTVKVQED--FVEIHGKHNERQDDHGYISREFHRRY 58
Query: 156 STRIDLPSNLYKFDDIKAGMKNGVLKIVVPKV 187
LPSN+ + + +G+L PK+
Sbjct: 59 R----LPSNVDQSALSCSLSADGMLTFSGPKI 86
>pdb|1GME|A Chain A, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|B Chain B, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|C Chain C, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
pdb|1GME|D Chain D, Crystal Structure And Assembly Of An Eukaryotic Small Heat
Shock Protein
Length = 151
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 93 SRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQ-NTQIIKGE-GPQNESESGGGDDDQE 150
+R W KE + K D+PG+ KE+V+V V+ N ++ GE + E ++ +
Sbjct: 44 ARMDW--KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER 101
Query: 151 NGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPK--VKEDEAKNV 195
+ ++ R L + K +++KAG++NGVL + VPK VK+ E K +
Sbjct: 102 SSGKFVRRFRLLEDA-KVEEVKAGLENGVLTVTVPKAEVKKPEVKAI 147
>pdb|3L1E|A Chain A, Bovine Alphaa Crystallin Zinc Bound
Length = 106
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRI 159
+ D + ++ +D+ S ED+ V VQ++ ++ G NE + G +E RRY
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQED--FVEIHGKHNERQDDHGYISREFHRRYR--- 62
Query: 160 DLPSNLYKFDDIKAGMKNGVLKIVVPKV 187
LPSN+ + + +G+L PK+
Sbjct: 63 -LPSNVDQSALSCSLSADGMLTFSGPKI 89
>pdb|4ELD|A Chain A, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
pdb|4ELD|B Chain B, Crystal Structure Of An Activated Variant Of Small Heat
Shock Protein Hsp16.5
Length = 161
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 92 VSRRGWL---AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGE-GPQ--NESESGGG 145
+S +G++ E D ++ + +PG++KED+ ++ +T I+ + P ESE
Sbjct: 51 ISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIY 110
Query: 146 DDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKEDEAKNV 195
+ E Y T I LP+ + K ++ A +NGVL +++PK + K +
Sbjct: 111 SEIPEEEEIYRT-IKLPATV-KEENASAKFENGVLSVILPKAESSIKKGI 158
>pdb|1SHS|A Chain A, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|B Chain B, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|C Chain C, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|D Chain D, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|E Chain E, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|F Chain F, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|G Chain G, Small Heat Shock Protein From Methanococcus Jannaschii
pdb|1SHS|H Chain H, Small Heat Shock Protein From Methanococcus Jannaschii
Length = 147
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 8/110 (7%)
Query: 92 VSRRGWL---AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGE-GPQ--NESESGGG 145
+S +G++ E D ++ + +PG++KED+ ++ +T I+ + P ESE
Sbjct: 37 ISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIY 96
Query: 146 DDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKEDEAKNV 195
+ E Y T I LP+ + K ++ A +NGVL +++PK + K +
Sbjct: 97 SEIPEEEEIYRT-IKLPATV-KEENASAKFENGVLSVILPKAESSIKKGI 144
>pdb|2H50|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H50|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|A Chain A, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|B Chain B, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|C Chain C, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|D Chain D, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|E Chain E, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|F Chain F, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|G Chain G, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|H Chain H, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|I Chain I, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|J Chain J, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|K Chain K, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|L Chain L, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|M Chain M, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|N Chain N, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|O Chain O, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|P Chain P, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|Q Chain Q, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|R Chain R, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|S Chain S, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|T Chain T, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|U Chain U, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|V Chain V, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|W Chain W, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
pdb|2H53|X Chain X, Multiple Distinct Assemblies Reveal Conformational
Flexibility In The Small Heat Shock Protein Hsp26
Length = 93
Score = 30.4 bits (67), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 93 SRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQ-NTQIIKGE-GPQNESESGGGDDDQE 150
+R W KE + K D+PG+ KE+V+V V+ N ++ GE + E ++ +
Sbjct: 1 ARMDW--KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER 58
Query: 151 NGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPK 186
+ ++ R L + K +++KAG++NGVL + VPK
Sbjct: 59 SSGKFVRRFRLLED-AKVEEVKAGLENGVLTVTVPK 93
>pdb|2BYU|A Chain A, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|B Chain B, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|C Chain C, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|D Chain D, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|E Chain E, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|F Chain F, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|G Chain G, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|H Chain H, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|I Chain I, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|J Chain J, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|K Chain K, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
pdb|2BYU|L Chain L, Negative Stain Em Reconstruction Of M.Tuberculosis
Acr1(Hsp 16.3) Fitted With Wheat Shsp Dimer
Length = 101
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 93 SRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQ-NTQIIKGE-GPQNESESGGGDDDQE 150
+R W KE + K D+PG+ KE+V+V V+ N ++ GE + E ++ +
Sbjct: 2 ARMDW--KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVER 59
Query: 151 NGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPK 186
+ ++ R L + K +++KAG++NGVL + VPK
Sbjct: 60 SSGKFVRRFRLLED-AKVEEVKAGLENGVLTVTVPK 94
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 116 SKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM 175
SK +V + N ++K GPQ GG + R+DLP Y F G
Sbjct: 40 SKHEVTILGGLNEFVVKFYGPQGTPYEGG---------VWKVRVDLPDK-YPFKSPSIGF 89
Query: 176 KNGVLKIVVPKVKEDEAKNVFKVNV 200
N KI P + DEA ++V
Sbjct: 90 MN---KIFHPNI--DEASGTVCLDV 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,807,803
Number of Sequences: 62578
Number of extensions: 187334
Number of successful extensions: 294
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 23
length of query: 201
length of database: 14,973,337
effective HSP length: 94
effective length of query: 107
effective length of database: 9,091,005
effective search space: 972737535
effective search space used: 972737535
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 49 (23.5 bits)