Query 044098
Match_columns 201
No_of_seqs 243 out of 1660
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044098.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044098hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 99.9 5.6E-26 1.2E-30 177.8 14.8 119 72-199 15-135 (142)
2 COG0071 IbpA Molecular chapero 99.9 1E-25 2.3E-30 177.1 14.9 106 93-200 39-145 (146)
3 PRK10743 heat shock protein Ib 99.9 5E-26 1.1E-30 177.3 12.7 102 94-200 34-136 (137)
4 cd06472 ACD_ScHsp26_like Alpha 99.9 1.7E-23 3.6E-28 152.3 11.5 90 96-186 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.4E-22 3E-27 149.3 12.7 101 98-200 1-101 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 2.3E-22 5E-27 146.3 11.5 90 95-186 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 4.1E-22 8.8E-27 144.7 12.1 89 95-186 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 4.6E-22 9.9E-27 143.4 11.6 82 98-186 4-86 (86)
9 cd06498 ACD_alphaB-crystallin_ 99.9 1.8E-21 4E-26 139.7 11.3 82 99-187 2-84 (84)
10 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 1.6E-21 3.5E-26 139.6 11.0 82 98-186 1-83 (83)
11 cd06479 ACD_HspB7_like Alpha c 99.9 1.9E-21 4.1E-26 138.7 10.2 79 98-186 2-81 (81)
12 cd06475 ACD_HspB1_like Alpha c 99.9 3.9E-21 8.5E-26 138.6 11.3 82 97-185 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.9 7.7E-21 1.7E-25 136.2 11.2 81 99-186 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.8 3E-20 6.5E-25 134.2 10.2 83 101-186 4-87 (87)
15 cd06477 ACD_HspB3_Like Alpha c 99.8 4.6E-20 9.9E-25 132.1 11.1 79 100-185 3-82 (83)
16 cd06464 ACD_sHsps-like Alpha-c 99.8 1.3E-19 2.8E-24 128.8 10.9 88 98-186 1-88 (88)
17 cd06482 ACD_HspB10 Alpha cryst 99.8 1.5E-19 3.3E-24 130.6 10.9 80 102-185 6-86 (87)
18 cd06526 metazoan_ACD Alpha-cry 99.8 1.4E-19 2.9E-24 129.3 10.3 77 103-186 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 7E-19 1.5E-23 144.7 7.9 108 93-201 83-195 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.7 8.4E-17 1.8E-21 117.1 10.2 81 99-186 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.6 1.8E-14 4E-19 116.3 11.0 98 95-199 63-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 7.9E-14 1.7E-18 95.4 10.9 80 99-186 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.3 2.6E-11 5.6E-16 84.8 8.9 71 99-189 1-71 (78)
24 cd06463 p23_like Proteins cont 99.0 4.2E-09 9.2E-14 73.3 9.3 75 100-189 2-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.0 4.4E-09 9.5E-14 84.7 10.3 78 94-191 91-172 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 7E-08 1.5E-12 68.0 8.9 77 98-189 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.5 5E-06 1.1E-10 57.2 12.7 77 95-186 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.2 2.7E-05 6E-10 57.8 10.8 78 95-188 1-78 (108)
29 cd06489 p23_CS_hSgt1_like p23_ 98.0 7.7E-05 1.7E-09 52.8 9.9 77 98-189 1-77 (84)
30 PF08190 PIH1: pre-RNA process 97.9 5.1E-05 1.1E-09 66.3 8.9 65 103-185 260-327 (328)
31 cd06468 p23_CacyBP p23_like do 97.8 0.0004 8.6E-09 49.8 10.7 79 96-189 3-85 (92)
32 cd06467 p23_NUDC_like p23_like 97.8 0.00024 5.1E-09 50.0 8.9 75 97-189 1-77 (85)
33 cd06488 p23_melusin_like p23_l 97.7 0.0011 2.4E-08 47.4 10.6 79 96-189 2-80 (87)
34 cd06493 p23_NUDCD1_like p23_NU 97.6 0.00078 1.7E-08 47.9 9.7 75 97-189 1-77 (85)
35 cd00237 p23 p23 binds heat sho 97.3 0.005 1.1E-07 45.9 10.9 78 95-189 2-79 (106)
36 cd06494 p23_NUDCD2_like p23-li 97.2 0.0043 9.3E-08 45.2 9.3 76 94-188 5-82 (93)
37 cd06492 p23_mNUDC_like p23-lik 96.5 0.044 9.6E-07 39.2 9.5 74 98-189 2-79 (87)
38 PLN03088 SGT1, suppressor of 96.3 0.032 6.9E-07 49.8 9.7 81 94-189 156-236 (356)
39 KOG1309 Suppressor of G2 allel 96.3 0.019 4.1E-07 46.7 7.2 79 94-187 3-81 (196)
40 cd06490 p23_NCB5OR p23_like do 95.8 0.22 4.8E-06 35.5 10.1 76 97-189 1-80 (87)
41 cd06495 p23_NUDCD3_like p23-li 95.8 0.26 5.6E-06 36.5 10.7 81 94-189 4-87 (102)
42 KOG3158 HSP90 co-chaperone p23 87.7 3 6.6E-05 33.8 7.2 81 93-190 6-86 (180)
43 COG5091 SGT1 Suppressor of G2 87.1 0.26 5.6E-06 42.9 0.9 82 93-188 175-256 (368)
44 KOG2265 Nuclear distribution p 81.2 12 0.00027 30.3 8.1 79 93-189 17-97 (179)
45 PF13349 DUF4097: Domain of un 80.5 11 0.00024 29.0 7.6 83 94-183 65-147 (166)
46 cd06482 ACD_HspB10 Alpha cryst 74.8 7.5 0.00016 27.8 4.7 35 153-189 8-42 (87)
47 COG4004 Uncharacterized protei 71.9 20 0.00043 26.1 6.2 45 73-133 14-58 (96)
48 cd06471 ACD_LpsHSP_like Group 70.1 9.2 0.0002 26.9 4.3 31 103-133 61-91 (93)
49 cd06477 ACD_HspB3_Like Alpha c 68.1 22 0.00047 25.1 5.8 35 152-188 6-40 (83)
50 PRK10743 heat shock protein Ib 67.9 20 0.00043 27.7 6.0 33 154-188 46-78 (137)
51 PF04972 BON: BON domain; Int 66.8 13 0.00029 24.0 4.2 26 113-138 12-37 (64)
52 cd06476 ACD_HspB2_like Alpha c 66.7 21 0.00046 25.0 5.5 33 153-187 7-39 (83)
53 cd06464 ACD_sHsps-like Alpha-c 65.8 15 0.00032 24.9 4.5 32 102-133 54-86 (88)
54 cd06478 ACD_HspB4-5-6 Alpha-cr 65.7 26 0.00057 24.4 5.8 33 153-187 7-39 (83)
55 KOG1667 Zn2+-binding protein M 64.7 36 0.00078 29.5 7.3 82 95-190 215-296 (320)
56 cd06470 ACD_IbpA-B_like Alpha- 63.8 19 0.00042 25.4 4.9 36 153-190 11-46 (90)
57 cd06526 metazoan_ACD Alpha-cry 63.7 17 0.00036 25.2 4.5 35 153-189 7-41 (83)
58 cd06497 ACD_alphaA-crystallin_ 63.6 29 0.00063 24.4 5.7 34 152-187 9-42 (86)
59 cd06469 p23_DYX1C1_like p23_li 62.7 25 0.00053 23.6 5.1 33 104-136 36-69 (78)
60 cd00298 ACD_sHsps_p23-like Thi 62.6 18 0.00039 23.2 4.4 31 103-133 47-78 (80)
61 cd06472 ACD_ScHsp26_like Alpha 62.5 16 0.00035 25.7 4.3 31 103-133 59-90 (92)
62 PF00011 HSP20: Hsp20/alpha cr 61.6 20 0.00043 25.4 4.7 36 104-139 55-91 (102)
63 PRK11597 heat shock chaperone 60.6 31 0.00068 26.9 5.9 33 154-188 44-76 (142)
64 cd06479 ACD_HspB7_like Alpha c 60.0 24 0.00052 24.7 4.7 33 153-187 8-40 (81)
65 PF12992 DUF3876: Domain of un 58.2 43 0.00092 24.4 5.9 41 93-133 24-69 (95)
66 PF00347 Ribosomal_L6: Ribosom 57.9 27 0.00058 23.5 4.6 47 117-186 2-48 (77)
67 PF14913 DPCD: DPCD protein fa 55.2 1.1E+02 0.0025 25.2 8.4 77 93-188 85-170 (194)
68 PF01954 DUF104: Protein of un 55.0 11 0.00023 25.2 2.1 17 169-185 3-19 (60)
69 cd06480 ACD_HspB8_like Alpha-c 55.0 26 0.00057 25.2 4.3 30 104-133 58-89 (91)
70 cd06481 ACD_HspB9_like Alpha c 54.9 34 0.00073 24.1 4.8 34 153-188 7-40 (87)
71 cd06498 ACD_alphaB-crystallin_ 51.4 62 0.0013 22.6 5.7 33 153-187 7-39 (84)
72 cd06463 p23_like Proteins cont 50.5 49 0.0011 21.8 5.0 35 103-137 40-75 (84)
73 KOG3260 Calcyclin-binding prot 50.5 42 0.0009 27.7 5.2 77 97-188 77-154 (224)
74 cd06475 ACD_HspB1_like Alpha c 49.7 52 0.0011 23.1 5.1 35 152-188 9-43 (86)
75 PTZ00027 60S ribosomal protein 46.3 50 0.0011 27.0 5.2 47 117-185 13-59 (190)
76 COG0071 IbpA Molecular chapero 42.0 69 0.0015 24.6 5.2 33 154-188 51-83 (146)
77 PTZ00179 60S ribosomal protein 41.3 89 0.0019 25.6 5.9 47 117-185 12-58 (189)
78 PF08308 PEGA: PEGA domain; I 38.6 1.1E+02 0.0025 20.0 5.4 40 96-135 26-67 (71)
79 PRK05518 rpl6p 50S ribosomal p 37.0 1.9E+02 0.0041 23.5 7.1 45 117-185 13-57 (180)
80 PF08845 SymE_toxin: Toxin Sym 35.3 52 0.0011 21.6 3.0 22 111-132 34-56 (57)
81 cd06466 p23_CS_SGT1_like p23_l 35.1 95 0.0021 20.8 4.5 35 103-137 41-76 (84)
82 TIGR03653 arch_L6P archaeal ri 34.7 76 0.0016 25.5 4.4 45 117-185 7-51 (170)
83 KOG3413 Mitochondrial matrix p 34.7 18 0.0004 28.6 0.8 23 162-185 66-88 (156)
84 PF07873 YabP: YabP family; I 34.2 31 0.00066 23.1 1.8 21 115-135 23-43 (66)
85 PF13349 DUF4097: Domain of un 34.2 1.3E+02 0.0028 22.8 5.7 31 103-133 117-148 (166)
86 PRK11198 LysM domain/BON super 34.0 57 0.0012 25.3 3.6 26 113-138 38-63 (147)
87 cd06467 p23_NUDC_like p23_like 34.0 94 0.002 21.0 4.4 31 154-185 9-39 (85)
88 cd00503 Frataxin Frataxin is a 33.8 42 0.00091 24.8 2.6 17 169-185 28-44 (105)
89 PF01491 Frataxin_Cyay: Fratax 32.9 60 0.0013 24.0 3.3 19 169-187 30-48 (109)
90 PRK00446 cyaY frataxin-like pr 30.5 46 0.001 24.6 2.4 17 171-187 29-45 (105)
91 KOG3591 Alpha crystallins [Pos 30.4 76 0.0016 25.6 3.8 34 106-139 117-152 (173)
92 PRK13726 conjugal transfer pil 30.1 1.4E+02 0.0029 24.5 5.3 50 118-185 131-180 (188)
93 TIGR03421 FeS_CyaY iron donor 30.1 51 0.0011 24.2 2.5 17 170-186 26-42 (102)
94 cd06494 p23_NUDCD2_like p23-li 28.7 1.2E+02 0.0026 21.7 4.2 31 153-184 15-45 (93)
95 COG0097 RplF Ribosomal protein 28.0 1.4E+02 0.003 24.3 4.9 20 116-135 11-30 (178)
96 PF06964 Alpha-L-AF_C: Alpha-L 27.5 2.7E+02 0.0059 21.8 6.6 25 162-187 152-176 (177)
97 TIGR02856 spore_yqfC sporulati 27.4 44 0.00096 23.7 1.7 24 112-135 38-61 (85)
98 TIGR02892 spore_yabP sporulati 26.8 47 0.001 23.7 1.8 22 114-135 21-42 (85)
99 PF05455 GvpH: GvpH; InterPro 25.4 3.2E+02 0.007 22.2 6.5 39 101-139 133-171 (177)
100 KOG4379 Uncharacterized conser 23.9 2.7E+02 0.0057 26.4 6.4 54 80-133 275-329 (596)
101 PF10988 DUF2807: Protein of u 23.8 91 0.002 24.2 3.2 36 98-134 14-49 (181)
102 cd02178 GH16_beta_agarase Beta 23.7 2.8E+02 0.006 23.3 6.3 42 122-163 60-109 (258)
103 PF14683 CBM-like: Polysacchar 22.9 86 0.0019 25.0 2.8 82 95-188 67-154 (167)
104 KOG3247 Uncharacterized conser 22.5 41 0.00088 31.1 0.9 78 94-190 3-82 (466)
105 PF05309 TraE: TraE protein; 22.1 1.8E+02 0.0038 23.3 4.6 21 117-137 130-150 (187)
106 TIGR03422 mito_frataxin fratax 21.9 65 0.0014 23.5 1.8 16 172-187 30-45 (97)
107 PF13715 DUF4480: Domain of un 21.9 2.6E+02 0.0056 18.8 4.9 35 98-132 38-75 (88)
108 COG2880 Uncharacterized protei 21.5 7.9 0.00017 26.5 -2.9 14 169-182 5-18 (67)
109 PF10988 DUF2807: Protein of u 20.4 2.2E+02 0.0049 21.9 4.8 34 155-190 21-54 (181)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.94 E-value=5.6e-26 Score=177.79 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCcceEEEE-cCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccce
Q 044098 72 SLNQVLNLMDQFLDNPFVSPVSRRGWLAKE-DDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQE 150 (201)
Q Consensus 72 ~l~~l~~~md~lf~~~~~~~~~~p~~dv~E-~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~ 150 (201)
.|++|++.|++.+. ....|++||+| ++++|+|+++|||++++||+|++++|.|+|+|+++.+. ++....+.|+
T Consensus 15 ~~d~l~~~~~~~~~-----~~~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~-~~~~~~~~Er 88 (142)
T PRK11597 15 GFDKLANALQNAGE-----SQSFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPE-KEVKWLHQGL 88 (142)
T ss_pred cHHHHHHHhcccCc-----cCCCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEcccc-CCCcEEEEEE
Confidence 45666655544322 22468899998 57799999999999999999999999999999976432 2223345789
Q ss_pred eeeEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcCc-ccCCCeeEee
Q 044098 151 NGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKE-DEAKNVFKVN 199 (201)
Q Consensus 151 ~~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~~-~~~~~~i~I~ 199 (201)
.++.|+|+|.||.+| |.+ +|+|+||||+|+|||..+ ..+++.|.|+
T Consensus 89 ~~g~F~R~f~LP~~v-d~~--~A~~~nGVL~I~lPK~~~~~~~~rkI~I~ 135 (142)
T PRK11597 89 VNQPFSLSFTLAENM-EVS--GATFVNGLLHIDLIRNEPEAIAPQRIAIS 135 (142)
T ss_pred eCcEEEEEEECCCCc-ccC--cCEEcCCEEEEEEeccCccccCCcEEEEC
Confidence 999999999999999 887 799999999999999743 3345555554
No 2
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1e-25 Score=177.07 Aligned_cols=106 Identities=26% Similarity=0.444 Sum_probs=91.4
Q ss_pred CCcceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCC-CcccceeeeEEEEEEECCCCCCCCCce
Q 044098 93 SRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGG-GDDDQENGRRYSTRIDLPSNLYKFDDI 171 (201)
Q Consensus 93 ~~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~-~~~~e~~~~~f~r~i~LP~~v~d~~~I 171 (201)
+.|++||+|++++|+|.++|||++++||+|+++++.|+|+|++..+...++. ..+.++.++.|+|+|.||..| +++.+
T Consensus 39 ~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v-~~~~~ 117 (146)
T COG0071 39 GTPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKV-DPEVI 117 (146)
T ss_pred CCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccc-cccce
Confidence 5799999999999999999999999999999999999999999874333333 346799999999999999999 99999
Q ss_pred EEEEECCEEEEEEeCcCcccCCCeeEeec
Q 044098 172 KAGMKNGVLKIVVPKVKEDEAKNVFKVNV 200 (201)
Q Consensus 172 ~A~~~nGvL~I~lPK~~~~~~~~~i~I~I 200 (201)
+|+|+||||+|+|||..+++ .+...|.|
T Consensus 118 ~A~~~nGvL~I~lpk~~~~~-~~~~~i~I 145 (146)
T COG0071 118 KAKYKNGLLTVTLPKAEPEE-KKPKRIEI 145 (146)
T ss_pred eeEeeCcEEEEEEecccccc-ccCceeec
Confidence 99999999999999997654 33444444
No 3
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.94 E-value=5e-26 Score=177.32 Aligned_cols=102 Identities=17% Similarity=0.330 Sum_probs=84.0
Q ss_pred CcceEEEE-cCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceE
Q 044098 94 RRGWLAKE-DDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIK 172 (201)
Q Consensus 94 ~p~~dv~E-~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~ 172 (201)
.|++||.+ ++++|+|+++|||++++||+|++++|.|+|+|+++.+. ++......|+.+++|+|+|.||.+| +.+ +
T Consensus 34 ~p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~-~~~~~~~~Er~~g~F~R~~~LP~~V-d~~--~ 109 (137)
T PRK10743 34 YPPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQ-KERTYLYQGIAERNFERKFQLAENI-HVR--G 109 (137)
T ss_pred CCcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccc-cCCcEEEEEEECCEEEEEEECCCCc-ccC--c
Confidence 38899995 89999999999999999999999999999999976543 2222345689999999999999999 888 4
Q ss_pred EEEECCEEEEEEeCcCcccCCCeeEeec
Q 044098 173 AGMKNGVLKIVVPKVKEDEAKNVFKVNV 200 (201)
Q Consensus 173 A~~~nGvL~I~lPK~~~~~~~~~i~I~I 200 (201)
|+|+||||+|+|||.++++ .+..+|.|
T Consensus 110 A~~~dGVL~I~lPK~~~~~-~~~r~I~I 136 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEA-KKPRRIEI 136 (137)
T ss_pred CEEeCCEEEEEEeCCCccc-cCCeEEee
Confidence 9999999999999974332 23444444
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.90 E-value=1.7e-23 Score=152.28 Aligned_cols=90 Identities=36% Similarity=0.537 Sum_probs=79.6
Q ss_pred ceEEEEcCCeEEEEEEcCCCcccceEEEEECC-EEEEEEeecCcCCCCCCCc-ccceeeeEEEEEEECCCCCCCCCceEE
Q 044098 96 GWLAKEDDNNLILKMDMPGLSKEDVRVSVQQN-TQIIKGEGPQNESESGGGD-DDQENGRRYSTRIDLPSNLYKFDDIKA 173 (201)
Q Consensus 96 ~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~-~L~I~g~~~~~~~~~~~~~-~~e~~~~~f~r~i~LP~~v~d~~~I~A 173 (201)
.+||+|++++|+|.++|||++++||+|+++++ .|+|+|++..+...+...+ ..++.++.|.|+|.||.+| +.+.|+|
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v-~~~~i~A 79 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENA-DADEVKA 79 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCC-CHHHCEE
Confidence 37999999999999999999999999999975 9999999876543333333 3588899999999999999 9999999
Q ss_pred EEECCEEEEEEeC
Q 044098 174 GMKNGVLKIVVPK 186 (201)
Q Consensus 174 ~~~nGvL~I~lPK 186 (201)
.|+||||+|++||
T Consensus 80 ~~~nGvL~I~lPK 92 (92)
T cd06472 80 FLENGVLTVTVPK 92 (92)
T ss_pred EEECCEEEEEecC
Confidence 9999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.89 E-value=1.4e-22 Score=149.25 Aligned_cols=101 Identities=33% Similarity=0.575 Sum_probs=78.7
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEEC
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKN 177 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~n 177 (201)
||.|++++|.|.++|||+.+++|+|+++++.|+|+|++. ...........++..+.|.++|.||.++ |.++|+|.|+|
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~-~~~~~~~~~~~~~~~~~f~r~~~lP~~v-d~~~i~a~~~~ 78 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRK-EEEEDDRYYRSERRYGSFERSIRLPEDV-DPDKIKASYEN 78 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEE-GEECTTCEEEE-S-SEEEEEEEE-STTB--GGG-EEEETT
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceee-eeeeeeeeeecccccceEEEEEcCCCcC-CcceEEEEecC
Confidence 789999999999999999999999999999999999998 2222222234578889999999999999 99999999999
Q ss_pred CEEEEEEeCcCcccCCCeeEeec
Q 044098 178 GVLKIVVPKVKEDEAKNVFKVNV 200 (201)
Q Consensus 178 GvL~I~lPK~~~~~~~~~i~I~I 200 (201)
|+|+|++||....+......|+|
T Consensus 79 GvL~I~~pk~~~~~~~~~~~I~I 101 (102)
T PF00011_consen 79 GVLTITIPKKEEEEDSQPKRIPI 101 (102)
T ss_dssp SEEEEEEEBSSSCTTSSSCEE-E
T ss_pred CEEEEEEEccccccCCCCeEEEe
Confidence 99999999998776434445544
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.89 E-value=2.3e-22 Score=146.28 Aligned_cols=90 Identities=30% Similarity=0.453 Sum_probs=78.8
Q ss_pred cceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCC---CCcccceeeeEEEEEEECCCCCCCCCce
Q 044098 95 RGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESG---GGDDDQENGRRYSTRIDLPSNLYKFDDI 171 (201)
Q Consensus 95 p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~---~~~~~e~~~~~f~r~i~LP~~v~d~~~I 171 (201)
+.+||+|++++|+|.++|||++++||+|+++++.|+|+|++....++.. .....++.+++|.|+|.|| ++ +.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v-~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NV-DEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CC-CHHHC
Confidence 3689999999999999999999999999999999999999976433221 1234588899999999999 68 99999
Q ss_pred EEEEECCEEEEEEeC
Q 044098 172 KAGMKNGVLKIVVPK 186 (201)
Q Consensus 172 ~A~~~nGvL~I~lPK 186 (201)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.88 E-value=4.1e-22 Score=144.66 Aligned_cols=89 Identities=20% Similarity=0.367 Sum_probs=78.3
Q ss_pred cceEEEEcC-CeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEE
Q 044098 95 RGWLAKEDD-NNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKA 173 (201)
Q Consensus 95 p~~dv~E~~-d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A 173 (201)
|++||+|++ ++|+|.++|||++++||+|.++++.|+|+|+++....++....+.++.++.|.|+|.||.++ +. ++|
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~v-d~--~~A 77 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHV-KV--KGA 77 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCc-eE--Cee
Confidence 679999975 99999999999999999999999999999999877553333345688999999999999998 65 499
Q ss_pred EEECCEEEEEEeC
Q 044098 174 GMKNGVLKIVVPK 186 (201)
Q Consensus 174 ~~~nGvL~I~lPK 186 (201)
+|+||+|+|+||+
T Consensus 78 ~~~~GvL~I~l~~ 90 (90)
T cd06470 78 ELENGLLTIDLER 90 (90)
T ss_pred EEeCCEEEEEEEC
Confidence 9999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.88 E-value=4.6e-22 Score=143.44 Aligned_cols=82 Identities=26% Similarity=0.438 Sum_probs=72.8
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEE-E
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM-K 176 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~-~ 176 (201)
+|.|++++|.|.++|||++++||+|++.+|.|+|+|++....+ ..+...+.|+|+|.||.+| |.++|+|.| +
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~------~~~~~~~ef~R~~~LP~~V-d~~~i~A~~~~ 76 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQD------DHGYISREFHRRYRLPSNV-DQSAITCSLSA 76 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeC------CCCEEEEEEEEEEECCCCC-ChHHeEEEeCC
Confidence 7999999999999999999999999999999999998753321 1234556799999999999 999999999 8
Q ss_pred CCEEEEEEeC
Q 044098 177 NGVLKIVVPK 186 (201)
Q Consensus 177 nGvL~I~lPK 186 (201)
||||+|++||
T Consensus 77 dGvL~I~~PK 86 (86)
T cd06497 77 DGMLTFSGPK 86 (86)
T ss_pred CCEEEEEecC
Confidence 9999999998
No 9
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.87 E-value=1.8e-21 Score=139.71 Aligned_cols=82 Identities=17% Similarity=0.380 Sum_probs=71.9
Q ss_pred EEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEE-C
Q 044098 99 AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMK-N 177 (201)
Q Consensus 99 v~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~-n 177 (201)
+.+++++|.|.++|||++++||+|++.+|.|+|+|++....+ ..+...+.|+|+|.||.+| |.++|+|+|+ |
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~------~~~~~~~eF~R~~~LP~~v-d~~~i~A~~~~d 74 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQD------EHGFISREFQRKYRIPADV-DPLTITSSLSPD 74 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeC------CCCEEEEEEEEEEECCCCC-ChHHcEEEeCCC
Confidence 678899999999999999999999999999999998754321 1234566899999999999 9999999995 9
Q ss_pred CEEEEEEeCc
Q 044098 178 GVLKIVVPKV 187 (201)
Q Consensus 178 GvL~I~lPK~ 187 (201)
|||+|++||.
T Consensus 75 GvL~I~lPk~ 84 (84)
T cd06498 75 GVLTVCGPRK 84 (84)
T ss_pred CEEEEEEeCC
Confidence 9999999984
No 10
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.87 E-value=1.6e-21 Score=139.62 Aligned_cols=82 Identities=22% Similarity=0.387 Sum_probs=71.6
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEE-E
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM-K 176 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~-~ 176 (201)
++.+++++|.|.++|||++++||+|++.+|.|+|+|++....+ ..+...+.|+|+|.||.+| |.++|+|.| +
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~------~~~~~~~ef~R~~~LP~~v-d~~~i~A~~~~ 73 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQD------EHGFISREFHRRYRLPPGV-DPAAITSSLSA 73 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcC------CCCEEEEEEEEEEECCCCc-ChHHeEEEECC
Confidence 3788999999999999999999999999999999998753321 1234456799999999999 999999999 6
Q ss_pred CCEEEEEEeC
Q 044098 177 NGVLKIVVPK 186 (201)
Q Consensus 177 nGvL~I~lPK 186 (201)
||||+|++||
T Consensus 74 dGvL~I~~PK 83 (83)
T cd06478 74 DGVLTISGPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999998
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.86 E-value=1.9e-21 Score=138.71 Aligned_cols=79 Identities=16% Similarity=0.311 Sum_probs=72.5
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEE-E
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM-K 176 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~-~ 176 (201)
||.|++++|.|.++|||++++||+|++++|.|+|+|+++.+. +..+++|+|+|.||.+| |.+.|+|.| +
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~---------~~~~g~F~R~~~LP~~v-d~e~v~A~l~~ 71 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASD---------GTVMNTFTHKCQLPEDV-DPTSVSSSLGE 71 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccC---------CCEEEEEEEEEECCCCc-CHHHeEEEecC
Confidence 689999999999999999999999999999999999985432 23689999999999999 999999997 9
Q ss_pred CCEEEEEEeC
Q 044098 177 NGVLKIVVPK 186 (201)
Q Consensus 177 nGvL~I~lPK 186 (201)
||+|+|++++
T Consensus 72 ~GvL~I~~~~ 81 (81)
T cd06479 72 DGTLTIKARR 81 (81)
T ss_pred CCEEEEEecC
Confidence 9999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.86 E-value=3.9e-21 Score=138.56 Aligned_cols=82 Identities=13% Similarity=0.332 Sum_probs=73.3
Q ss_pred eEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEE
Q 044098 97 WLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMK 176 (201)
Q Consensus 97 ~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~ 176 (201)
.+|+|++++|.|.++|||+++++|+|++.+|.|+|+|++..... ..+...++|+|+|.||.+| |.++|+|.|+
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~------~~~~~~~~f~R~f~LP~~v-d~~~v~A~~~ 75 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQD------EHGFVSRCFTRKYTLPPGV-DPTAVTSSLS 75 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcC------CCCEEEEEEEEEEECCCCC-CHHHcEEEEC
Confidence 58999999999999999999999999999999999999864321 1234567999999999999 9999999997
Q ss_pred -CCEEEEEEe
Q 044098 177 -NGVLKIVVP 185 (201)
Q Consensus 177 -nGvL~I~lP 185 (201)
||+|+|++|
T Consensus 76 ~dGvL~I~lP 85 (86)
T cd06475 76 PDGILTVEAP 85 (86)
T ss_pred CCCeEEEEec
Confidence 999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.85 E-value=7.7e-21 Score=136.21 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=71.2
Q ss_pred EEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEE-C
Q 044098 99 AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMK-N 177 (201)
Q Consensus 99 v~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~-n 177 (201)
+..++++|.|.++|||++++||+|++.+|.|+|+|++.... ...++..+.|+|+|.||.+| |.++|+|.|+ |
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~------~~~~~~~~eF~R~~~LP~~v-d~~~v~A~~~~d 74 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRM------DRHGFVSREFTRTYILPMDV-DPLLVRASLSHD 74 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccee------cCCCEEEEEEEEEEECCCCC-ChhhEEEEecCC
Confidence 34578899999999999999999999999999999985432 12346677899999999999 9999999996 9
Q ss_pred CEEEEEEeC
Q 044098 178 GVLKIVVPK 186 (201)
Q Consensus 178 GvL~I~lPK 186 (201)
|+|+|++||
T Consensus 75 GvL~I~~Pr 83 (83)
T cd06476 75 GILCIQAPR 83 (83)
T ss_pred CEEEEEecC
Confidence 999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.83 E-value=3e-20 Score=134.23 Aligned_cols=83 Identities=20% Similarity=0.440 Sum_probs=71.3
Q ss_pred EcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEE-ECCE
Q 044098 101 EDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM-KNGV 179 (201)
Q Consensus 101 E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~-~nGv 179 (201)
+.++.|.|.++|||++++||+|++++|.|+|+|++......+...+ .+.++.|+|+|.||.+| |.+.|+|.| +|||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~--~~~~~~F~R~~~LP~~V-d~~~i~A~~~~dGv 80 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSF--SYEYQEFVREAQLPEHV-DPEAVTCSLSPSGH 80 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcE--EEEeeEEEEEEECCCCc-ChHHeEEEeCCCce
Confidence 5578999999999999999999999999999999865533221212 34679999999999999 999999999 9999
Q ss_pred EEEEEeC
Q 044098 180 LKIVVPK 186 (201)
Q Consensus 180 L~I~lPK 186 (201)
|+|++|+
T Consensus 81 L~I~~P~ 87 (87)
T cd06481 81 LHIRAPR 87 (87)
T ss_pred EEEEcCC
Confidence 9999995
No 15
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.83 E-value=4.6e-20 Score=132.15 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=69.5
Q ss_pred EEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEE-ECC
Q 044098 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM-KNG 178 (201)
Q Consensus 100 ~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~-~nG 178 (201)
.|++++|.|+++|||++++||+|++++|.|+|+|++....+ ..+...++|+|+|.||.+| +.++|+|.| +||
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~------~~~~~~r~F~R~~~LP~~V-d~~~v~A~~~~dG 75 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMD------EHGFISRSFTRQYQLPDGV-EHKDLSAMLCHDG 75 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccC------CCCEEEEEEEEEEECCCCc-chheEEEEEcCCC
Confidence 46788999999999999999999999999999999866431 1234567999999999999 999999998 899
Q ss_pred EEEEEEe
Q 044098 179 VLKIVVP 185 (201)
Q Consensus 179 vL~I~lP 185 (201)
||+|+.|
T Consensus 76 vL~I~~~ 82 (83)
T cd06477 76 ILVVETK 82 (83)
T ss_pred EEEEEec
Confidence 9999976
No 16
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=1.3e-19 Score=128.75 Aligned_cols=88 Identities=33% Similarity=0.547 Sum_probs=78.3
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEEC
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKN 177 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~n 177 (201)
++.|++++|+|.++|||+++++|+|++.++.|.|+|++.............+...+.|.++|.||..+ +.+.++|.|+|
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~v-d~~~i~a~~~~ 79 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDV-DPDKIKASLEN 79 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCc-CHHHcEEEEeC
Confidence 47899999999999999999999999999999999999876543322234578899999999999999 99999999999
Q ss_pred CEEEEEEeC
Q 044098 178 GVLKIVVPK 186 (201)
Q Consensus 178 GvL~I~lPK 186 (201)
|+|+|++||
T Consensus 80 G~L~I~~pk 88 (88)
T cd06464 80 GVLTITLPK 88 (88)
T ss_pred CEEEEEEcC
Confidence 999999997
No 17
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.82 E-value=1.5e-19 Score=130.55 Aligned_cols=80 Identities=20% Similarity=0.321 Sum_probs=70.4
Q ss_pred cCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECC-EE
Q 044098 102 DDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNG-VL 180 (201)
Q Consensus 102 ~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nG-vL 180 (201)
++++|+|.++|||++++||+|++.+|.|+|+|+++...+++ ...++.+++|.|+|.||.+| |.++|+|+|+|| +|
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~---~~~er~~g~F~R~f~LP~~V-d~d~i~A~~~~~~~l 81 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCL---GSKKYSYMNICKEFSLPPGV-DEKDVTYSYGLGSVV 81 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccC---CccEEEEEEEEEEEECCCCc-ChHHcEEEEcCCCEE
Confidence 56799999999999999999999999999999987653211 23478999999999999999 999999999976 99
Q ss_pred EEEEe
Q 044098 181 KIVVP 185 (201)
Q Consensus 181 ~I~lP 185 (201)
+|.-|
T Consensus 82 ~i~~~ 86 (87)
T cd06482 82 KIETP 86 (87)
T ss_pred EEeeC
Confidence 99877
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.82 E-value=1.4e-19 Score=129.34 Aligned_cols=77 Identities=26% Similarity=0.568 Sum_probs=69.5
Q ss_pred CCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEEC-CEEE
Q 044098 103 DNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKN-GVLK 181 (201)
Q Consensus 103 ~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~n-GvL~ 181 (201)
+++|.|.++||||+++||+|+++++.|+|+|++..... ..+...++|.|+|.||.+| |.+.|+|.|+| |+|+
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~------~~~~~~~~f~r~~~LP~~v-d~~~i~A~~~~~GvL~ 78 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEERED------EHGYVSREFTRRYQLPEGV-DPDSVTSSLSSDGVLT 78 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeecc------CCCEEEEEEEEEEECCCCC-ChHHeEEEeCCCcEEE
Confidence 36999999999999999999999999999999876532 2345789999999999999 99999999998 9999
Q ss_pred EEEeC
Q 044098 182 IVVPK 186 (201)
Q Consensus 182 I~lPK 186 (201)
|++||
T Consensus 79 I~~Pk 83 (83)
T cd06526 79 IEAPK 83 (83)
T ss_pred EEecC
Confidence 99997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=7e-19 Score=144.73 Aligned_cols=108 Identities=36% Similarity=0.603 Sum_probs=93.6
Q ss_pred CCcceEEEEcCCeEEEEEEcCCCcccceEEEEECC-EEEEEEeecCcCCCC--CCCcc-cceeeeEEEEEEECCCCCCCC
Q 044098 93 SRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQN-TQIIKGEGPQNESES--GGGDD-DQENGRRYSTRIDLPSNLYKF 168 (201)
Q Consensus 93 ~~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~-~L~I~g~~~~~~~~~--~~~~~-~e~~~~~f~r~i~LP~~v~d~ 168 (201)
..+.|++.|..+.|++.++|||+++++|+|.++++ +|+|+|++..+.++. ...++ .++..+.|.+++.||+++ +.
T Consensus 83 ~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv-~~ 161 (196)
T KOG0710|consen 83 ARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENV-DV 161 (196)
T ss_pred ccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccc-cH
Confidence 67889999999999999999999999999999987 799999998876542 22232 478888999999999999 99
Q ss_pred CceEEEEECCEEEEEEeCcCcc-cCCCeeEeecC
Q 044098 169 DDIKAGMKNGVLKIVVPKVKED-EAKNVFKVNVE 201 (201)
Q Consensus 169 ~~I~A~~~nGvL~I~lPK~~~~-~~~~~i~I~IE 201 (201)
+.|+|.|+||||+|++||..+. ++++++.|.|.
T Consensus 162 d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~ 195 (196)
T KOG0710|consen 162 DEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAIS 195 (196)
T ss_pred HHHHHHhhCCeEEEEEecccccccCCccceeecc
Confidence 9999999999999999999774 45677777763
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.71 E-value=8.4e-17 Score=117.07 Aligned_cols=81 Identities=14% Similarity=0.315 Sum_probs=71.9
Q ss_pred EEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEE-C
Q 044098 99 AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMK-N 177 (201)
Q Consensus 99 v~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~-n 177 (201)
+...++.|.|.+++.||++|||+|++.+|.|+|+|++....+ ..+...+.|+|+|.||.+| |.+.|+|.|. |
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~------e~g~~~r~F~R~~~LP~~V-d~~~v~s~l~~d 82 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQK------EGGIVSKNFTKKIQLPPEV-DPVTVFASLSPE 82 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccC------CCCEEEEEEEEEEECCCCC-CchhEEEEeCCC
Confidence 456788999999999999999999999999999999876532 1245679999999999999 9999999998 9
Q ss_pred CEEEEEEeC
Q 044098 178 GVLKIVVPK 186 (201)
Q Consensus 178 GvL~I~lPK 186 (201)
|+|+|.+|.
T Consensus 83 GvL~IeaP~ 91 (91)
T cd06480 83 GLLIIEAPQ 91 (91)
T ss_pred CeEEEEcCC
Confidence 999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.8e-14 Score=116.29 Aligned_cols=98 Identities=18% Similarity=0.361 Sum_probs=83.7
Q ss_pred cceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEE
Q 044098 95 RGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAG 174 (201)
Q Consensus 95 p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~ 174 (201)
...++..+++.|.|.+|+..|++++|+|++.|+.|.|+|++.... ...+...+.|.|+|.||.+| |++.|++.
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~------d~~G~v~R~F~R~y~LP~~v-dp~~V~S~ 135 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKE------DEHGYVSRSFVRKYLLPEDV-DPTSVTST 135 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCCCEEEEEeeecccc------CCCCeEEEEEEEEecCCCCC-ChhheEEe
Confidence 346888999999999999999999999999999999999987653 23466789999999999999 99999999
Q ss_pred EE-CCEEEEEEeCcCcccC-CCeeEee
Q 044098 175 MK-NGVLKIVVPKVKEDEA-KNVFKVN 199 (201)
Q Consensus 175 ~~-nGvL~I~lPK~~~~~~-~~~i~I~ 199 (201)
+. ||+|+|..||....+. .+.|.|+
T Consensus 136 LS~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 136 LSSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred eCCCceEEEEccCCCCcCccceEEeEe
Confidence 95 9999999999976543 3344443
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.55 E-value=7.9e-14 Score=95.43 Aligned_cols=80 Identities=30% Similarity=0.614 Sum_probs=72.3
Q ss_pred EEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECC
Q 044098 99 AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNG 178 (201)
Q Consensus 99 v~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nG 178 (201)
+.++++.|.|++++||+.+++|+|.+.++.|.|+|....... .+...+.|.+.+.||..+ +++.++|.+.+|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~-------~~~~~~~~~~~~~L~~~i-~~~~~~~~~~~~ 72 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE-------RERSYGEFERSFELPEDV-DPEKSKASLENG 72 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCc-------ceEeeeeEEEEEECCCCc-CHHHCEEEEECC
Confidence 367889999999999999999999999999999998765421 455678999999999999 999999999999
Q ss_pred EEEEEEeC
Q 044098 179 VLKIVVPK 186 (201)
Q Consensus 179 vL~I~lPK 186 (201)
+|.|++||
T Consensus 73 ~l~i~l~K 80 (80)
T cd00298 73 VLEITLPK 80 (80)
T ss_pred EEEEEEcC
Confidence 99999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.28 E-value=2.6e-11 Score=84.76 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=65.1
Q ss_pred EEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECC
Q 044098 99 AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNG 178 (201)
Q Consensus 99 v~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nG 178 (201)
+.++++.+.|.+++||+++++++|+++++.|.|+| ..|...+.||..| +++..+|.+++|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-------------------~~~~~~~~l~~~I-~~e~~~~~~~~~ 60 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-------------------PPYLFELDLAAPI-DDEKSSAKIGNG 60 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-------------------CCEEEEEeCcccc-cccccEEEEeCC
Confidence 35789999999999999999999999999999976 1488999999999 999999999999
Q ss_pred EEEEEEeCcCc
Q 044098 179 VLKIVVPKVKE 189 (201)
Q Consensus 179 vL~I~lPK~~~ 189 (201)
.|.|+|+|..+
T Consensus 61 ~l~i~L~K~~~ 71 (78)
T cd06469 61 VLVFTLVKKEP 71 (78)
T ss_pred EEEEEEEeCCC
Confidence 99999999854
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.99 E-value=4.2e-09 Score=73.32 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=67.1
Q ss_pred EEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECCE
Q 044098 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGV 179 (201)
Q Consensus 100 ~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nGv 179 (201)
.++++.+.|.+.+||..+++++|.+.++.|.|++... ....|...+.|+..| +++..++.+++|.
T Consensus 2 ~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~--------------~~~~~~~~~~L~~~I-~~~~s~~~~~~~~ 66 (84)
T cd06463 2 YQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGG--------------GGKEYLLEGELFGPI-DPEESKWTVEDRK 66 (84)
T ss_pred cccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCC--------------CCCceEEeeEccCcc-chhhcEEEEeCCE
Confidence 5788999999999999999999999999999998643 124678889999999 9999999999999
Q ss_pred EEEEEeCcCc
Q 044098 180 LKIVVPKVKE 189 (201)
Q Consensus 180 L~I~lPK~~~ 189 (201)
|.|+|+|..+
T Consensus 67 l~i~L~K~~~ 76 (84)
T cd06463 67 IEITLKKKEP 76 (84)
T ss_pred EEEEEEECCC
Confidence 9999999865
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=98.99 E-value=4.4e-09 Score=84.73 Aligned_cols=78 Identities=27% Similarity=0.504 Sum_probs=63.1
Q ss_pred CcceEEEEcCC-eEEEEEEcCCCcccc-eEEEEEC--CEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCC
Q 044098 94 RRGWLAKEDDN-NLILKMDMPGLSKED-VRVSVQQ--NTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFD 169 (201)
Q Consensus 94 ~p~~dv~E~~d-~y~l~~dlPG~~~ed-I~V~v~~--~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~ 169 (201)
.+.+++.+.++ +++|.++|||+++++ |+|.++. +.|+|+. ..+|.+++.||.. +.+
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~------------------~~~~~krv~L~~~--~~e 150 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRV------------------GEKYLKRVALPWP--DPE 150 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEec------------------CCceEeeEecCCC--ccc
Confidence 56789999888 699999999999888 9999985 5555532 2246789999975 578
Q ss_pred ceEEEEECCEEEEEEeCcCccc
Q 044098 170 DIKAGMKNGVLKIVVPKVKEDE 191 (201)
Q Consensus 170 ~I~A~~~nGvL~I~lPK~~~~~ 191 (201)
.++|.|+||||+|+|-+..+..
T Consensus 151 ~~~~t~nNgILEIri~~~~~~~ 172 (177)
T PF05455_consen 151 ITSATFNNGILEIRIRRTEESS 172 (177)
T ss_pred eeeEEEeCceEEEEEeecCCCC
Confidence 8999999999999999886543
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.76 E-value=7e-08 Score=68.02 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=68.1
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEEC
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKN 177 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~n 177 (201)
|++++++.+.|.+.+||+.+++++|.++++.|.|++... ....|...+.|+..| +++..++.+.+
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~--------------~~~~~~~~~~L~~~I-~~~~s~~~~~~ 65 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILP--------------GGSEYQLELDLFGPI-DPEQSKVSVLP 65 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECC--------------CCCeEEEeccccccc-CchhcEEEEeC
Confidence 567899999999999999999999999999999987632 123688889999999 99999999999
Q ss_pred CEEEEEEeCcCc
Q 044098 178 GVLKIVVPKVKE 189 (201)
Q Consensus 178 GvL~I~lPK~~~ 189 (201)
|.|.|+|.|...
T Consensus 66 ~~vei~L~K~~~ 77 (84)
T cd06466 66 TKVEITLKKAEP 77 (84)
T ss_pred eEEEEEEEcCCC
Confidence 999999999864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.53 E-value=5e-06 Score=57.21 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=65.2
Q ss_pred cceEEEEcCCeEEEEEEcCCC--cccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceE
Q 044098 95 RGWLAKEDDNNLILKMDMPGL--SKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIK 172 (201)
Q Consensus 95 p~~dv~E~~d~y~l~~dlPG~--~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~ 172 (201)
|.+++.++++.+.|.+.+++. ++++++|.++++.|.|+...... ..|.-.+.|...| +++..+
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~--------------~~~~~~~~L~~~I-~~~~s~ 65 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDG--------------KEYLLEGELFGEI-DPDEST 65 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTS--------------CEEEEEEEBSS-B-ECCCEE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCC--------------ceEEEEEEEeeeE-cchhcE
Confidence 568999999999999999665 59999999999999998653221 4777888899999 999999
Q ss_pred EEEECCEEEEEEeC
Q 044098 173 AGMKNGVLKIVVPK 186 (201)
Q Consensus 173 A~~~nGvL~I~lPK 186 (201)
+.+.++.|.|+|.|
T Consensus 66 ~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 66 WKVKDNKIEITLKK 79 (79)
T ss_dssp EEEETTEEEEEEEB
T ss_pred EEEECCEEEEEEEC
Confidence 99999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.20 E-value=2.7e-05 Score=57.81 Aligned_cols=78 Identities=14% Similarity=0.327 Sum_probs=68.0
Q ss_pred cceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEE
Q 044098 95 RGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAG 174 (201)
Q Consensus 95 p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~ 174 (201)
|+++++++.+.+.|.+.+||. ++++|.+..+.|.|++.... ....|.-.+.|...| +++..+..
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~-------------~~~~y~~~~~L~~~I-~pe~s~~~ 64 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGG-------------GGKKYEFDLEFYKEI-DPEESKYK 64 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCC-------------CCeeEEEEeEhhhhc-cccccEEE
Confidence 568999999999999999998 88999999999999885321 123577788999999 99999999
Q ss_pred EECCEEEEEEeCcC
Q 044098 175 MKNGVLKIVVPKVK 188 (201)
Q Consensus 175 ~~nGvL~I~lPK~~ 188 (201)
+.++.|.|+|.|..
T Consensus 65 v~~~kveI~L~K~~ 78 (108)
T cd06465 65 VTGRQIEFVLRKKE 78 (108)
T ss_pred ecCCeEEEEEEECC
Confidence 99999999999986
No 29
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.04 E-value=7.7e-05 Score=52.78 Aligned_cols=77 Identities=14% Similarity=0.219 Sum_probs=65.6
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEEC
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKN 177 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~n 177 (201)
|++++++.+.|.+.++|+.+++++|.++++.|.+++.... ...|.-.+.|...| ++++.+.....
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~--------------~~~y~~~~~L~~~I-~p~~s~~~v~~ 65 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPS--------------GNDYSLKLHLLHPI-VPEQSSYKILS 65 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCC--------------CCcEEEeeecCcee-cchhcEEEEeC
Confidence 5678999999999999999999999999999999876421 12477778999999 89988888889
Q ss_pred CEEEEEEeCcCc
Q 044098 178 GVLKIVVPKVKE 189 (201)
Q Consensus 178 GvL~I~lPK~~~ 189 (201)
+-+.|.|.|...
T Consensus 66 ~kiei~L~K~~~ 77 (84)
T cd06489 66 TKIEIKLKKTEA 77 (84)
T ss_pred cEEEEEEEcCCC
Confidence 999999999753
No 30
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=97.93 E-value=5.1e-05 Score=66.29 Aligned_cols=65 Identities=22% Similarity=0.487 Sum_probs=57.9
Q ss_pred CCeEEEEEEcCCC-cccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEE--CCE
Q 044098 103 DNNLILKMDMPGL-SKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMK--NGV 179 (201)
Q Consensus 103 ~d~y~l~~dlPG~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~--nGv 179 (201)
.+.++|+++|||+ +..+|+|.|.+..|.|.... ..|.-.+.||..| +.+..+|.|. .++
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~-----------------~~y~L~l~LP~~V-~~~~~~Akf~~~~~~ 321 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSEDRLSLSSPK-----------------PKYRLDLPLPYPV-DEDNGKAKFDKKTKT 321 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeCCEEEEEeCC-----------------CceEEEccCCCcc-cCCCceEEEccCCCE
Confidence 5789999999999 88999999999999997432 1688889999999 9999999995 699
Q ss_pred EEEEEe
Q 044098 180 LKIVVP 185 (201)
Q Consensus 180 L~I~lP 185 (201)
|+|+||
T Consensus 322 L~vtlp 327 (328)
T PF08190_consen 322 LTVTLP 327 (328)
T ss_pred EEEEEE
Confidence 999998
No 31
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.83 E-value=0.0004 Score=49.78 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=66.2
Q ss_pred ceEEEEcCCeEEEEEEcCCCcc---cceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEE-CCCCCCCCCce
Q 044098 96 GWLAKEDDNNLILKMDMPGLSK---EDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRID-LPSNLYKFDDI 171 (201)
Q Consensus 96 ~~dv~E~~d~y~l~~dlPG~~~---edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~-LP~~v~d~~~I 171 (201)
.+++.++++.+.|.+.+|+..+ ++++|.++.+.|.|++.... ...|.-.+. |-..| +++..
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~~~~~~~~L~~~I-~~e~s 67 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLN--------------GKNYRFTINRLLKKI-DPEKS 67 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCC--------------CcEEEEEehHhhCcc-Ccccc
Confidence 4789999999999999999876 99999999999999874311 124555664 88999 99999
Q ss_pred EEEEECCEEEEEEeCcCc
Q 044098 172 KAGMKNGVLKIVVPKVKE 189 (201)
Q Consensus 172 ~A~~~nGvL~I~lPK~~~ 189 (201)
+.....+-+.|+|.|.++
T Consensus 68 ~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 68 SFKVKTDRIVITLAKKKE 85 (92)
T ss_pred EEEEeCCEEEEEEEeCCC
Confidence 999999999999999865
No 32
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.80 E-value=0.00024 Score=50.04 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=61.5
Q ss_pred eEEEEcCCeEEEEEEcC-CCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEE
Q 044098 97 WLAKEDDNNLILKMDMP-GLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM 175 (201)
Q Consensus 97 ~dv~E~~d~y~l~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~ 175 (201)
+.+.++++.+.|.+.+| |+.++||+|.+..+.|.|+.... .+.-...|...| +++.....+
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~-----------------~~~l~~~L~~~I-~~~~s~w~~ 62 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGG-----------------EPLLDGELYAKV-KVDESTWTL 62 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCC-----------------CceEcCcccCce-eEcCCEEEE
Confidence 35789999999999998 78999999999999999986420 111223688888 999998899
Q ss_pred EC-CEEEEEEeCcCc
Q 044098 176 KN-GVLKIVVPKVKE 189 (201)
Q Consensus 176 ~n-GvL~I~lPK~~~ 189 (201)
.+ ..|.|+|+|.++
T Consensus 63 ~~~~~v~i~L~K~~~ 77 (85)
T cd06467 63 EDGKLLEITLEKRNE 77 (85)
T ss_pred eCCCEEEEEEEECCC
Confidence 99 999999999865
No 33
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.65 E-value=0.0011 Score=47.38 Aligned_cols=79 Identities=10% Similarity=0.062 Sum_probs=67.6
Q ss_pred ceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEE
Q 044098 96 GWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM 175 (201)
Q Consensus 96 ~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~ 175 (201)
.+|++++++.+.|.+.+.|+.++++.|.++++.|.|+..... ...|.-.+.|-..| +++..+...
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~--------------~~~y~~~l~L~~~I-~~~~s~~~v 66 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEG--------------NKEFQLDIELWGVI-DVEKSSVNM 66 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCC--------------CceEEEEeeccceE-ChhHcEEEe
Confidence 368999999999999999999999999999999998754321 22478888999999 999988888
Q ss_pred ECCEEEEEEeCcCc
Q 044098 176 KNGVLKIVVPKVKE 189 (201)
Q Consensus 176 ~nGvL~I~lPK~~~ 189 (201)
..+-+.|+|.|..+
T Consensus 67 ~~~kvei~L~K~~~ 80 (87)
T cd06488 67 LPTKVEIKLRKAEP 80 (87)
T ss_pred cCcEEEEEEEeCCC
Confidence 89999999999854
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.65 E-value=0.00078 Score=47.87 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=60.2
Q ss_pred eEEEEcCCeEEEEEEcC-CCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEE
Q 044098 97 WLAKEDDNNLILKMDMP-GLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGM 175 (201)
Q Consensus 97 ~dv~E~~d~y~l~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~ 175 (201)
+++.++.+.+.|.+.+| |+.++|++|+++.+.|.|+.... . .+ -.-.|...| +++.-.-.+
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~-~---------------~~-~~g~L~~~I-~~d~Stw~i 62 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQ-A---------------PL-LEGKLYSSI-DHESSTWII 62 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCC-C---------------eE-EeCcccCcc-cccCcEEEE
Confidence 46789999999999996 99999999999999999965210 0 11 122788898 999988888
Q ss_pred ECC-EEEEEEeCcCc
Q 044098 176 KNG-VLKIVVPKVKE 189 (201)
Q Consensus 176 ~nG-vL~I~lPK~~~ 189 (201)
++| .|.|+|.|..+
T Consensus 63 ~~~~~l~i~L~K~~~ 77 (85)
T cd06493 63 KENKSLEVSLIKKDE 77 (85)
T ss_pred eCCCEEEEEEEECCC
Confidence 777 79999999864
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.34 E-value=0.005 Score=45.90 Aligned_cols=78 Identities=14% Similarity=0.157 Sum_probs=62.8
Q ss_pred cceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEE
Q 044098 95 RGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAG 174 (201)
Q Consensus 95 p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~ 174 (201)
|.+++.+..+.+.|++.+|+ .++++|+++++.|.++|... . ...|.-.+.|-..| ++++-+-.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~-~-------------g~~y~~~l~l~~~I-~pe~Sk~~ 64 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNG-D-------------NVKIYNEIELYDRV-DPNDSKHK 64 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECC-C-------------CcEEEEEEEeeccc-CcccCeEE
Confidence 67899999999999999999 58999999999999998432 1 11366678888888 88877766
Q ss_pred EECCEEEEEEeCcCc
Q 044098 175 MKNGVLKIVVPKVKE 189 (201)
Q Consensus 175 ~~nGvL~I~lPK~~~ 189 (201)
...--+.|.|.|..+
T Consensus 65 v~~r~ve~~L~K~~~ 79 (106)
T cd00237 65 RTDRSILCCLRKGKE 79 (106)
T ss_pred eCCceEEEEEEeCCC
Confidence 666678888998754
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.23 E-value=0.0043 Score=45.20 Aligned_cols=76 Identities=13% Similarity=0.212 Sum_probs=62.2
Q ss_pred CcceEEEEcCCeEEEEEEcC-CCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceE
Q 044098 94 RRGWLAKEDDNNLILKMDMP-GLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIK 172 (201)
Q Consensus 94 ~p~~dv~E~~d~y~l~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~ 172 (201)
...+.+.++.+.+.|.+.+| |....|++|.+..+.|.|.-... . -+.. .|...| +++.-.
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~------------~----~l~G--~L~~~I-~~dest 65 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQ------------E----VLKG--KLFDSV-VADECT 65 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCE------------E----EEcC--cccCcc-CcccCE
Confidence 45689999999999999999 89999999999999999974210 0 1111 688889 999999
Q ss_pred EEEECCE-EEEEEeCcC
Q 044098 173 AGMKNGV-LKIVVPKVK 188 (201)
Q Consensus 173 A~~~nGv-L~I~lPK~~ 188 (201)
..+++|- |.|+|.|..
T Consensus 66 Wtled~k~l~I~L~K~~ 82 (93)
T cd06494 66 WTLEDRKLIRIVLTKSN 82 (93)
T ss_pred EEEECCcEEEEEEEeCC
Confidence 9998874 899999985
No 37
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=96.48 E-value=0.044 Score=39.23 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=57.2
Q ss_pred EEEEcCCeEEEEEEcC-C--CcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEE
Q 044098 98 LAKEDDNNLILKMDMP-G--LSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAG 174 (201)
Q Consensus 98 dv~E~~d~y~l~~dlP-G--~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~ 174 (201)
.+.++.++..|.+.+| | .+..||+|.+..+.|.|.-+.... -+.. .|...| +.+.-.-.
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~---------------~i~G--~L~~~V-~~des~Wt 63 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPP---------------IIDG--ELYNEV-KVEESSWL 63 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCce---------------EEeC--cccCcc-cccccEEE
Confidence 3567888999999996 3 789999999999999996432110 1122 678888 99999999
Q ss_pred EECC-EEEEEEeCcCc
Q 044098 175 MKNG-VLKIVVPKVKE 189 (201)
Q Consensus 175 ~~nG-vL~I~lPK~~~ 189 (201)
+++| .|.|+|-|...
T Consensus 64 led~~~l~i~L~K~~~ 79 (87)
T cd06492 64 IEDGKVVTVNLEKINK 79 (87)
T ss_pred EeCCCEEEEEEEECCC
Confidence 9986 89999999854
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.32 E-value=0.032 Score=49.77 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=67.3
Q ss_pred CcceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEE
Q 044098 94 RRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKA 173 (201)
Q Consensus 94 ~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A 173 (201)
...+|++++++.+.|.|-+.|+.++++.|.+.++.|.|+..... ...|.-.+.|-..| +++..+.
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I-~p~~s~~ 220 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPG--------------EDAYHLQPRLFGKI-IPDKCKY 220 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCC--------------Ccceeecccccccc-cccccEE
Confidence 35679999999999999999999999999999999999864321 12466667888999 9999888
Q ss_pred EEECCEEEEEEeCcCc
Q 044098 174 GMKNGVLKIVVPKVKE 189 (201)
Q Consensus 174 ~~~nGvL~I~lPK~~~ 189 (201)
.....-+.|+|.|...
T Consensus 221 ~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 221 EVLSTKIEIRLAKAEP 236 (356)
T ss_pred EEecceEEEEEecCCC
Confidence 8888889999988753
No 39
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=96.29 E-value=0.019 Score=46.70 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=56.1
Q ss_pred CcceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEE
Q 044098 94 RRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKA 173 (201)
Q Consensus 94 ~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A 173 (201)
.+.+|+++++...+|.+-.+|+.++|+.|.+.+++|.|..+.... ..|.-...|-..| .+++.+-
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g--------------~~~~l~~~L~~~I-~pe~~s~ 67 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSG--------------SEYNLQLKLYHEI-IPEKSSF 67 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCc--------------hhhhhhHHhcccc-cccceee
Confidence 467899999999999999999999999999999999998765422 1222233344555 5555554
Q ss_pred EEECCEEEEEEeCc
Q 044098 174 GMKNGVLKIVVPKV 187 (201)
Q Consensus 174 ~~~nGvL~I~lPK~ 187 (201)
+.----+.|+|+|.
T Consensus 68 k~~stKVEI~L~K~ 81 (196)
T KOG1309|consen 68 KVFSTKVEITLAKA 81 (196)
T ss_pred EeeeeeEEEEeccc
Confidence 44455556666664
No 40
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=95.76 E-value=0.22 Score=35.46 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=57.1
Q ss_pred eEEEEcCCeEEEEEEcCC--CcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEE
Q 044098 97 WLAKEDDNNLILKMDMPG--LSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAG 174 (201)
Q Consensus 97 ~dv~E~~d~y~l~~dlPG--~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~ 174 (201)
+|++++++.+.|.+-..+ ..+.++.+....+.|.|+-... ...|...+.|-..| +.+. +..
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~---------------~~~~~~~~~L~~~I-~~~~-~~~ 63 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG---------------DKSYLLHLDLSNEV-QWPC-EVR 63 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC---------------CceEEEeeeccccC-CCCc-EEE
Confidence 478999999999999885 5666666777778898865422 12477778888888 7774 555
Q ss_pred EE--CCEEEEEEeCcCc
Q 044098 175 MK--NGVLKIVVPKVKE 189 (201)
Q Consensus 175 ~~--nGvL~I~lPK~~~ 189 (201)
+. -|-++|+|.|..+
T Consensus 64 ~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 64 ISTETGKIELVLKKKEP 80 (87)
T ss_pred EcccCceEEEEEEcCCC
Confidence 55 7899999999754
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=95.75 E-value=0.26 Score=36.49 Aligned_cols=81 Identities=12% Similarity=0.237 Sum_probs=61.9
Q ss_pred CcceEEEEcCCeEEEEEEcC-CC-cccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCce
Q 044098 94 RRGWLAKEDDNNLILKMDMP-GL-SKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDI 171 (201)
Q Consensus 94 ~p~~dv~E~~d~y~l~~dlP-G~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I 171 (201)
...|.+.++-+.+.|++.+| |. +..||.|.+..+.|.|.-...... .--+.. .|+..| +.+.-
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~------------~~~i~G--~L~~~V-~~des 68 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGE------------KVLMEG--EFTHKI-NTENS 68 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCC------------ceEEeC--cccCcc-cCccc
Confidence 45688999999999999999 54 679999999999999975421000 001112 688888 99999
Q ss_pred EEEEECC-EEEEEEeCcCc
Q 044098 172 KAGMKNG-VLKIVVPKVKE 189 (201)
Q Consensus 172 ~A~~~nG-vL~I~lPK~~~ 189 (201)
...+++| .|.|+|-|..+
T Consensus 69 ~Wtled~~~l~I~L~K~~~ 87 (102)
T cd06495 69 LWSLEPGKCVLLSLSKCSE 87 (102)
T ss_pred eEEEeCCCEEEEEEEECCC
Confidence 9999986 58999999853
No 42
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=87.65 E-value=3 Score=33.80 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=61.1
Q ss_pred CCcceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceE
Q 044098 93 SRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIK 172 (201)
Q Consensus 93 ~~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~ 172 (201)
..|.+-+.+..+.++|++.++-. .+.+|.+++..|+++|+.... .-.|...|.|=..| |+++.+
T Consensus 6 ~~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~~~l~fs~k~~~d-------------~~~~~~~ief~~eI-dpe~sk 69 (180)
T KOG3158|consen 6 QPPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEPSKLTFSCKSGAD-------------NHKYENEIEFFDEI-DPEKSK 69 (180)
T ss_pred cCCcchhhhhcCeEEEEEEeccC--ccceeeccccEEEEEeccCCC-------------ceeeEEeeehhhhc-CHhhcc
Confidence 35678888889999999999865 566778888899999987533 23677778888998 888877
Q ss_pred EEEECCEEEEEEeCcCcc
Q 044098 173 AGMKNGVLKIVVPKVKED 190 (201)
Q Consensus 173 A~~~nGvL~I~lPK~~~~ 190 (201)
-+-. +-+...++++++.
T Consensus 70 ~k~~-~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 70 HKRT-SRSIFCILRKKEL 86 (180)
T ss_pred cccc-ceEEEEEEEcccc
Confidence 6655 6666666655443
No 43
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=87.06 E-value=0.26 Score=42.89 Aligned_cols=82 Identities=16% Similarity=0.073 Sum_probs=62.0
Q ss_pred CCcceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceE
Q 044098 93 SRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIK 172 (201)
Q Consensus 93 ~~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~ 172 (201)
....|+.-+|.+...|-+--|-++.++|.+.+++|+|.|+-+.... .--+...+.|-..| .++...
T Consensus 175 ~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~-------------~~~~~~~~~Ly~ev-~P~~~s 240 (368)
T COG5091 175 MEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRL-------------RLWNDITISLYKEV-YPDIRS 240 (368)
T ss_pred ceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeecccc-------------chHHHhhhhhhhhc-Ccchhh
Confidence 3456788999999999999999999999999999999998654322 22344456677777 777766
Q ss_pred EEEECCEEEEEEeCcC
Q 044098 173 AGMKNGVLKIVVPKVK 188 (201)
Q Consensus 173 A~~~nGvL~I~lPK~~ 188 (201)
-+.--.++.|+|-|..
T Consensus 241 ~k~fsK~~e~~l~KV~ 256 (368)
T COG5091 241 IKSFSKRVEVHLRKVE 256 (368)
T ss_pred hhhcchhheehhhhhh
Confidence 6655577777777764
No 44
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=81.21 E-value=12 Score=30.34 Aligned_cols=79 Identities=15% Similarity=0.276 Sum_probs=59.3
Q ss_pred CCcceEEEEcCCeEEEEEEcC-CC-cccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCc
Q 044098 93 SRRGWLAKEDDNNLILKMDMP-GL-SKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDD 170 (201)
Q Consensus 93 ~~p~~dv~E~~d~y~l~~dlP-G~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~ 170 (201)
..+.+.+..|=..+.|.+.+| |+ +..+|.+.+....|.|.-+..... -.| .|...| +.+.
T Consensus 17 ~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~i-----------ldG------~L~~~v-k~de 78 (179)
T KOG2265|consen 17 DEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPI-----------LDG------ELSHSV-KVDE 78 (179)
T ss_pred cccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCce-----------ecC------cccccc-cccc
Confidence 456688888889999999888 77 889999999999988864433211 011 466777 8888
Q ss_pred eEEEEECCEEEEEEeCcCc
Q 044098 171 IKAGMKNGVLKIVVPKVKE 189 (201)
Q Consensus 171 I~A~~~nGvL~I~lPK~~~ 189 (201)
-...+++|.+.|.+-++..
T Consensus 79 s~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 79 STWTIEDGKMIVILLKKSN 97 (179)
T ss_pred ceEEecCCEEEEEEeeccc
Confidence 8999999977777765543
No 45
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=80.49 E-value=11 Score=28.99 Aligned_cols=83 Identities=20% Similarity=0.228 Sum_probs=50.7
Q ss_pred CcceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEE
Q 044098 94 RRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKA 173 (201)
Q Consensus 94 ~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A 173 (201)
...+.+...++ ..+++.. ..+.++++.++++|.|+.+.....-. ..+.-......-.-.+.||... ..++++.
T Consensus 65 ~~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~~~L~I~~~~~~~~~~--~~~~~~~~~~~~~i~I~lP~~~-~l~~i~i 137 (166)
T PF13349_consen 65 NGDVEIKPSDD-DKIKVEY---NGKKPEISVEGGTLTIKSKDRESFFF--KGFNFNNSDNKSKITIYLPKDY-KLDKIDI 137 (166)
T ss_pred ceeEEEEEcCC-ccEEEEE---cCcEEEEEEcCCEEEEEEeccccccc--ceEEEcccCCCcEEEEEECCCC-ceeEEEE
Confidence 34466666444 3344444 22279999999999998772221000 0010000123455678999987 7789999
Q ss_pred EEECCEEEEE
Q 044098 174 GMKNGVLKIV 183 (201)
Q Consensus 174 ~~~nGvL~I~ 183 (201)
...+|-+.|.
T Consensus 138 ~~~~G~i~i~ 147 (166)
T PF13349_consen 138 KTSSGDITIE 147 (166)
T ss_pred EeccccEEEE
Confidence 9999988875
No 46
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=74.84 E-value=7.5 Score=27.76 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=29.8
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcCc
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKE 189 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~~ 189 (201)
..|.-.+.||. + +.++|+.+++||.|+|.--+...
T Consensus 8 ~~~~v~adlPG-~-~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 8 SNVLASVDVCG-F-EPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred CEEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEecc
Confidence 36778889996 6 89999999999999999987543
No 47
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=71.93 E-value=20 Score=26.07 Aligned_cols=45 Identities=9% Similarity=0.399 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCcceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEE
Q 044098 73 LNQVLNLMDQFLDNPFVSPVSRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKG 133 (201)
Q Consensus 73 l~~l~~~md~lf~~~~~~~~~~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g 133 (201)
.+++++.|+.+| |++.+.+| .|....||+ +.|+|+.+...|.|.+
T Consensus 14 ~dri~~~l~e~g------------~~v~~eGD--~ivas~pgi--s~ieik~E~kkL~v~t 58 (96)
T COG4004 14 PDRIMRGLSELG------------WTVSEEGD--RIVASSPGI--SRIEIKPENKKLLVNT 58 (96)
T ss_pred HHHHHHHHHHhC------------eeEeeccc--EEEEecCCc--eEEEEecccceEEEec
Confidence 455556555443 78889998 777889998 4688899999999987
No 48
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=70.12 E-value=9.2 Score=26.94 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=26.7
Q ss_pred CCeEEEEEEcCCCcccceEEEEECCEEEEEE
Q 044098 103 DNNLILKMDMPGLSKEDVRVSVQQNTQIIKG 133 (201)
Q Consensus 103 ~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g 133 (201)
-+.|.-.+.+|.+..+.++-++.+|.|+|+-
T Consensus 61 ~g~f~r~~~lp~v~~~~i~A~~~dGvL~I~l 91 (93)
T cd06471 61 YGSFSRSFYLPNVDEEEIKAKYENGVLKITL 91 (93)
T ss_pred ccEEEEEEECCCCCHHHCEEEEECCEEEEEE
Confidence 3467777899999999999999999999974
No 49
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=68.11 E-value=22 Score=25.09 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=30.3
Q ss_pred eeEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcC
Q 044098 152 GRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVK 188 (201)
Q Consensus 152 ~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~ 188 (201)
...|.-.+.||. + +++.|+..+++|.|+|+--+..
T Consensus 6 ~~~~~v~~dlpG-~-~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 6 KPMFQILLDVVQ-F-RPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred CceEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEcc
Confidence 457888999998 4 8999999999999999997654
No 50
>PRK10743 heat shock protein IbpA; Provisional
Probab=67.91 E-value=20 Score=27.74 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=25.7
Q ss_pred EEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcC
Q 044098 154 RYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVK 188 (201)
Q Consensus 154 ~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~ 188 (201)
.|.-.+.||. + +.+.|+..+++|+|+|.--+..
T Consensus 46 ~~~v~aelPG-v-~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 46 HYRIAIAVAG-F-AESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEEECCC-C-CHHHeEEEEECCEEEEEEEECc
Confidence 3444557784 6 8899999999999999987544
No 51
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=66.82 E-value=13 Score=24.05 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=21.0
Q ss_pred CCCcccceEEEEECCEEEEEEeecCc
Q 044098 113 PGLSKEDVRVSVQQNTQIIKGEGPQN 138 (201)
Q Consensus 113 PG~~~edI~V~v~~~~L~I~g~~~~~ 138 (201)
++++..+|+|.+.++.++|+|.....
T Consensus 12 ~~~~~~~i~v~v~~g~v~L~G~v~s~ 37 (64)
T PF04972_consen 12 PWLPDSNISVSVENGVVTLSGEVPSQ 37 (64)
T ss_dssp -CTT-TTEEEEEECTEEEEEEEESSC
T ss_pred cccCCCeEEEEEECCEEEEEeeCcHH
Confidence 36777789999999999999998654
No 52
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=66.67 E-value=21 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=28.8
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCc
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKV 187 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~ 187 (201)
..|.-.+.||. + +++.|+.+++||.|+|.--+.
T Consensus 7 d~y~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (83)
T cd06476 7 DKYQVFLDVCH-F-TPDEITVRTVDNLLEVSARHP 39 (83)
T ss_pred CeEEEEEEcCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 47888999998 4 899999999999999988754
No 53
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=65.83 E-value=15 Score=24.89 Aligned_cols=32 Identities=9% Similarity=0.252 Sum_probs=28.4
Q ss_pred cCCeEEEEEEcC-CCcccceEEEEECCEEEEEE
Q 044098 102 DDNNLILKMDMP-GLSKEDVRVSVQQNTQIIKG 133 (201)
Q Consensus 102 ~~d~y~l~~dlP-G~~~edI~V~v~~~~L~I~g 133 (201)
....|.-.+.|| +++.+.++..+.+|.|+|+.
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G~L~I~~ 86 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENGVLTITL 86 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCCEEEEEE
Confidence 457899999999 68999999999999999975
No 54
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=65.68 E-value=26 Score=24.40 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=28.5
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCc
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKV 187 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~ 187 (201)
..|.-.+.||. + +++.|+..+.+|.|+|.--+.
T Consensus 7 ~~~~v~~dlpG-~-~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 7 DRFSVNLDVKH-F-SPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred ceEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 47888999995 6 899999999999999998654
No 55
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=64.71 E-value=36 Score=29.51 Aligned_cols=82 Identities=9% Similarity=0.021 Sum_probs=67.7
Q ss_pred cceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEE
Q 044098 95 RGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAG 174 (201)
Q Consensus 95 p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~ 174 (201)
-..|+..++..++|.+..-|.-++.-.|..++-.|.|+-.... ...+|...+.|=.-| +.+...+.
T Consensus 215 cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~-------------gna~fd~d~kLwgvv-nve~s~v~ 280 (320)
T KOG1667|consen 215 CRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGF-------------GNASFDLDYKLWGVV-NVEESSVV 280 (320)
T ss_pred chhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecC-------------CCceeeccceeeeee-chhhceEE
Confidence 3468999999999999999999999999999999988755431 234777778887777 88999999
Q ss_pred EECCEEEEEEeCcCcc
Q 044098 175 MKNGVLKIVVPKVKED 190 (201)
Q Consensus 175 ~~nGvL~I~lPK~~~~ 190 (201)
|-.--+.|+|+|..+-
T Consensus 281 m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 281 MGETKVEISLKKAEPG 296 (320)
T ss_pred eecceEEEEEeccCCC
Confidence 9888999999998654
No 56
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=63.77 E-value=19 Score=25.36 Aligned_cols=36 Identities=19% Similarity=0.384 Sum_probs=30.6
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcCcc
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKED 190 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~~~ 190 (201)
..|.-.+.||. + +.+.|+..+++|.|+|.-.+....
T Consensus 11 ~~~~v~~~lPG-~-~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 11 NNYRITLAVAG-F-SEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred CeEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEcccc
Confidence 47888999997 6 899999999999999998765543
No 57
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=63.66 E-value=17 Score=25.16 Aligned_cols=35 Identities=11% Similarity=0.302 Sum_probs=30.6
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcCc
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKE 189 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~~ 189 (201)
..|.-.+.||. + .++.|+..++++.|+|..-+...
T Consensus 7 ~~~~v~~dlpG-~-~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 7 EKFQVTLDVKG-F-KPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eeEEEEEECCC-C-CHHHcEEEEECCEEEEEEEEeee
Confidence 47899999997 6 89999999999999999886643
No 58
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=63.57 E-value=29 Score=24.40 Aligned_cols=34 Identities=9% Similarity=0.228 Sum_probs=29.0
Q ss_pred eeEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCc
Q 044098 152 GRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKV 187 (201)
Q Consensus 152 ~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~ 187 (201)
...|.-.+.||. + +++.|+...++|.|+|.--+.
T Consensus 9 ~~~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 9 RDKFTIYLDVKH-F-SPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred CCEEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 347888899998 5 899999999999999998654
No 59
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=62.65 E-value=25 Score=23.58 Aligned_cols=33 Identities=6% Similarity=0.204 Sum_probs=28.5
Q ss_pred CeEEEEEEcCC-CcccceEEEEECCEEEEEEeec
Q 044098 104 NNLILKMDMPG-LSKEDVRVSVQQNTQIIKGEGP 136 (201)
Q Consensus 104 d~y~l~~dlPG-~~~edI~V~v~~~~L~I~g~~~ 136 (201)
+.|.+.++||+ +++++.+.++.++.|.|+=.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCCEEEEEEEeC
Confidence 56899999997 7999999999999999985543
No 60
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=62.64 E-value=18 Score=23.22 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=27.3
Q ss_pred CCeEEEEEEcCC-CcccceEEEEECCEEEEEE
Q 044098 103 DNNLILKMDMPG-LSKEDVRVSVQQNTQIIKG 133 (201)
Q Consensus 103 ~d~y~l~~dlPG-~~~edI~V~v~~~~L~I~g 133 (201)
...|...+.||+ +.++.++..+.++.|.|.-
T Consensus 47 ~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l 78 (80)
T cd00298 47 YGEFERSFELPEDVDPEKSKASLENGVLEITL 78 (80)
T ss_pred eeeEEEEEECCCCcCHHHCEEEEECCEEEEEE
Confidence 468999999997 6889999999999999974
No 61
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=62.52 E-value=16 Score=25.73 Aligned_cols=31 Identities=6% Similarity=0.312 Sum_probs=27.6
Q ss_pred CCeEEEEEEcC-CCcccceEEEEECCEEEEEE
Q 044098 103 DNNLILKMDMP-GLSKEDVRVSVQQNTQIIKG 133 (201)
Q Consensus 103 ~d~y~l~~dlP-G~~~edI~V~v~~~~L~I~g 133 (201)
...|.-.+.|| +++.+.|+-++.+|.|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nGvL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENGVLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECCEEEEEe
Confidence 45889999999 68999999999999999963
No 62
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=61.60 E-value=20 Score=25.41 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=27.9
Q ss_pred CeEEEEEEcC-CCcccceEEEEECCEEEEEEeecCcC
Q 044098 104 NNLILKMDMP-GLSKEDVRVSVQQNTQIIKGEGPQNE 139 (201)
Q Consensus 104 d~y~l~~dlP-G~~~edI~V~v~~~~L~I~g~~~~~~ 139 (201)
..|.-.+.|| +++.+.|+-.+.+|.|+|+.-+....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~GvL~I~~pk~~~~ 91 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENGVLTITIPKKEEE 91 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTSEEEEEEEBSSSC
T ss_pred ceEEEEEcCCCcCCcceEEEEecCCEEEEEEEccccc
Confidence 4677789999 68999999999999999998876654
No 63
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=60.57 E-value=31 Score=26.91 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=26.3
Q ss_pred EEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcC
Q 044098 154 RYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVK 188 (201)
Q Consensus 154 ~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~ 188 (201)
.|.-.+.||. + +.+.|+..+++|+|+|.--+..
T Consensus 44 ~y~v~adlPG-v-~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 44 HYRITLALAG-F-RQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEEeCC-C-CHHHeEEEEECCEEEEEEEEcc
Confidence 3555667885 6 8899999999999999987543
No 64
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=60.04 E-value=24 Score=24.74 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=28.8
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCc
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKV 187 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~ 187 (201)
..|.-.+.||. + +++.|+.+.++|.|+|.--+.
T Consensus 8 ~~~~v~~dlpG-~-~pedi~V~v~~~~L~I~ger~ 40 (81)
T cd06479 8 DTYQFAVDVSD-F-SPEDIIVTTSNNQIEVHAEKL 40 (81)
T ss_pred CeEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEe
Confidence 47888899996 5 899999999999999998764
No 65
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=58.25 E-value=43 Score=24.40 Aligned_cols=41 Identities=5% Similarity=0.053 Sum_probs=34.1
Q ss_pred CCcceEEEEcCCeEEEEEEcCCC-----cccceEEEEECCEEEEEE
Q 044098 93 SRRGWLAKEDDNNLILKMDMPGL-----SKEDVRVSVQQNTQIIKG 133 (201)
Q Consensus 93 ~~p~~dv~E~~d~y~l~~dlPG~-----~~edI~V~v~~~~L~I~g 133 (201)
..|.+.|+++++.|.|.+--+.- +++...|.-+++.|.|.-
T Consensus 24 ~~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g~~fI~~ 69 (95)
T PF12992_consen 24 GKPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDGNLFIET 69 (95)
T ss_pred CCCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCCEEEEec
Confidence 47999999999999999866543 778888888899999863
No 66
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=57.90 E-value=27 Score=23.52 Aligned_cols=47 Identities=17% Similarity=0.363 Sum_probs=32.1
Q ss_pred ccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECCEEEEEEeC
Q 044098 117 KEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPK 186 (201)
Q Consensus 117 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK 186 (201)
|+.++|+++++.+.++|.... .++.||..+ .++...+++.+.+....
T Consensus 2 P~gV~v~~~~~~i~v~G~~g~-------------------l~~~~~~~v----~v~~~~~~~~~~~~~~~ 48 (77)
T PF00347_consen 2 PEGVKVTIKGNIITVKGPKGE-------------------LSRPIPPGV----KVEIKVEDNKITVSVLS 48 (77)
T ss_dssp STTCEEEEETTEEEEESSSSE-------------------EEEEETTTE----EEEEEEETTSEEEEEEE
T ss_pred CCcEEEEEeCcEEEEECCCEe-------------------EEEECCCCe----eEEEEcCCCceEEEECc
Confidence 567899999999999886432 345667654 23444668877776653
No 67
>PF14913 DPCD: DPCD protein family
Probab=55.18 E-value=1.1e+02 Score=25.18 Aligned_cols=77 Identities=17% Similarity=0.378 Sum_probs=56.7
Q ss_pred CCcceEEEEcCCeEEEEE-EcCCCcccceEEEEEC--CEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCC------
Q 044098 93 SRRGWLAKEDDNNLILKM-DMPGLSKEDVRVSVQQ--NTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPS------ 163 (201)
Q Consensus 93 ~~p~~dv~E~~d~y~l~~-dlPG~~~edI~V~v~~--~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~------ 163 (201)
..|-+--..+...|.-++ .|| ..++-..|++++ +.++|+.. -..|.+.|.+|+
T Consensus 85 ~nP~~~r~dTk~~fqWRIRNLP-YP~dvYsVtvd~~~r~ivvRTt-----------------NKKYyKk~~IPDl~R~~l 146 (194)
T PF14913_consen 85 SNPIFVRRDTKTSFQWRIRNLP-YPKDVYSVTVDEDERCIVVRTT-----------------NKKYYKKFSIPDLDRCGL 146 (194)
T ss_pred CCCEEEEEcCccceEEEEccCC-CCccceEEEEcCCCcEEEEECc-----------------CccceeEecCCcHHhhCC
Confidence 455566677888999998 555 466778888876 56888632 236677777774
Q ss_pred CCCCCCceEEEEECCEEEEEEeCcC
Q 044098 164 NLYKFDDIKAGMKNGVLKIVVPKVK 188 (201)
Q Consensus 164 ~v~d~~~I~A~~~nGvL~I~lPK~~ 188 (201)
.. +.+.++..+.|..|.|+..|..
T Consensus 147 ~l-~~~~ls~~h~nNTLIIsYkKP~ 170 (194)
T PF14913_consen 147 PL-EQSALSFAHQNNTLIISYKKPK 170 (194)
T ss_pred Cc-chhhceeeeecCeEEEEecCcH
Confidence 34 6688899999999999998764
No 68
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=55.03 E-value=11 Score=25.19 Aligned_cols=17 Identities=47% Similarity=0.542 Sum_probs=12.1
Q ss_pred CceEEEEECCEEEEEEe
Q 044098 169 DDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 169 ~~I~A~~~nGvL~I~lP 185 (201)
..|+|.|+||||+-.=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 46899999999986544
No 69
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=55.02 E-value=26 Score=25.20 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.3
Q ss_pred CeEEEEEEcC-CCcccceEEEEE-CCEEEEEE
Q 044098 104 NNLILKMDMP-GLSKEDVRVSVQ-QNTQIIKG 133 (201)
Q Consensus 104 d~y~l~~dlP-G~~~edI~V~v~-~~~L~I~g 133 (201)
..|.=++.|| +++.++|+=.+. +|.|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 4577788999 799999999998 89999986
No 70
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=54.95 E-value=34 Score=24.13 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=29.2
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcC
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVK 188 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~ 188 (201)
..|.-.+.||. + +++.|+..++++.|+|.--+..
T Consensus 7 d~~~v~~dlpG-~-~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 7 EGFSLKLDVRG-F-SPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred ceEEEEEECCC-C-ChHHeEEEEECCEEEEEEEEee
Confidence 47888999998 4 8999999999999999987654
No 71
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=51.36 E-value=62 Score=22.62 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=28.2
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCc
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKV 187 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~ 187 (201)
..|.-.+.||. + +++.|+....+|.|+|.--+.
T Consensus 7 ~~~~v~~dlpG-~-~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 7 DKFSVNLDVKH-F-SPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred ceEEEEEECCC-C-CHHHeEEEEECCEEEEEEEEc
Confidence 47888889987 5 899999999999999998543
No 72
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=50.53 E-value=49 Score=21.76 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCC-CcccceEEEEECCEEEEEEeecC
Q 044098 103 DNNLILKMDMPG-LSKEDVRVSVQQNTQIIKGEGPQ 137 (201)
Q Consensus 103 ~d~y~l~~dlPG-~~~edI~V~v~~~~L~I~g~~~~ 137 (201)
+..|.+.++|++ +.+++...++.++.|.|.=.+..
T Consensus 40 ~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~ 75 (84)
T cd06463 40 GKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKE 75 (84)
T ss_pred CCceEEeeEccCccchhhcEEEEeCCEEEEEEEECC
Confidence 468999999998 68899999999999999866543
No 73
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=50.48 E-value=42 Score=27.67 Aligned_cols=77 Identities=16% Similarity=0.284 Sum_probs=52.5
Q ss_pred eEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEE-CCCCCCCCCceEEEE
Q 044098 97 WLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRID-LPSNLYKFDDIKAGM 175 (201)
Q Consensus 97 ~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~-LP~~v~d~~~I~A~~ 175 (201)
+-+-+.++.+.+.+.|-|+..|.|.|.+..+.|-|.-.-- .+..|.-.+. |-..| +.++-.-..
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dl--------------qGK~y~~~vnnLlk~I-~vEks~~kv 141 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDL--------------QGKNYRMIVNNLLKPI-SVEKSSKKV 141 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecccceeeeeeec--------------CCcceeeehhhhcccc-Chhhccccc
Confidence 3445677888899999999999999999999888864321 1223333332 44555 667766777
Q ss_pred ECCEEEEEEeCcC
Q 044098 176 KNGVLKIVVPKVK 188 (201)
Q Consensus 176 ~nGvL~I~lPK~~ 188 (201)
+-....|.+.|.+
T Consensus 142 Ktd~v~I~~kkVe 154 (224)
T KOG3260|consen 142 KTDTVLILCKKVE 154 (224)
T ss_pred ccceEEEeehhhh
Confidence 7666777776654
No 74
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=49.68 E-value=52 Score=23.10 Aligned_cols=35 Identities=17% Similarity=0.365 Sum_probs=29.6
Q ss_pred eeEEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcC
Q 044098 152 GRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVK 188 (201)
Q Consensus 152 ~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~ 188 (201)
...|.-.+.||. + +++.|+..+.++.|+|+--+..
T Consensus 9 ~~~~~v~~dlPG-~-~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 9 ADRWKVSLDVNH-F-APEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred CCeEEEEEECCC-C-CHHHEEEEEECCEEEEEEEECc
Confidence 347888999997 4 8999999999999999987643
No 75
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=46.35 E-value=50 Score=27.03 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=32.8
Q ss_pred ccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECCEEEEEEe
Q 044098 117 KEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 117 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lP 185 (201)
|++|+|+++++.++|+|... +.++ .||..- ..|....+||.|.|.-+
T Consensus 13 P~~V~V~i~~~~v~VkGp~G-----------------~L~~--~~~~~~---~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYG-----------------ELTR--SFRHLP---VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred CCCCEEEEECCEEEEECCCc-----------------eEEE--EecCCC---ceEEEEeCCCEEEEEeC
Confidence 68999999999999998643 2233 444321 35666778898887754
No 76
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=41.99 E-value=69 Score=24.61 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=26.3
Q ss_pred EEEEEEECCCCCCCCCceEEEEECCEEEEEEeCcC
Q 044098 154 RYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVK 188 (201)
Q Consensus 154 ~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~ 188 (201)
.|.-.+.||. + +.+.|+-.+.++.|+|+.-+..
T Consensus 51 ~~~I~~elPG-~-~kedI~I~~~~~~l~I~g~~~~ 83 (146)
T COG0071 51 EYRITAELPG-V-DKEDIEITVEGNTLTIRGEREE 83 (146)
T ss_pred EEEEEEEcCC-C-ChHHeEEEEECCEEEEEEEecc
Confidence 4455567776 5 8899999999999999988765
No 77
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=41.27 E-value=89 Score=25.56 Aligned_cols=47 Identities=30% Similarity=0.291 Sum_probs=31.8
Q ss_pred ccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECCEEEEEEe
Q 044098 117 KEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 117 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lP 185 (201)
|+.|+|+++++.|+|+|... +.+ ..||..- -.|....++|.|.|.-+
T Consensus 12 P~~V~V~i~~~~ItVkGpkG-----------------~Ls--~~~~~~~---~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRG-----------------TLT--KDLRHLQ---LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeCCEEEEECCCc-----------------EEE--EEcCCCC---cEEEEEecCCEEEEEeC
Confidence 58899999999999998653 222 2444421 13566777888888744
No 78
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=38.58 E-value=1.1e+02 Score=19.98 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=29.6
Q ss_pred ceEEE-EcCCeEEEEEEcCCCcccceEEEEE-CCEEEEEEee
Q 044098 96 GWLAK-EDDNNLILKMDMPGLSKEDVRVSVQ-QNTQIIKGEG 135 (201)
Q Consensus 96 ~~dv~-E~~d~y~l~~dlPG~~~edI~V~v~-~~~L~I~g~~ 135 (201)
++.+. =..+.|.|++..||+..-.-.|.+. +....|+...
T Consensus 26 p~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 26 PLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred cceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 34555 3477899999999999888888887 4566666554
No 79
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=36.99 E-value=1.9e+02 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=31.2
Q ss_pred ccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECCEEEEEEe
Q 044098 117 KEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 117 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lP 185 (201)
|+.++|+++++.++|+|... +.++ .||. ..++...+||.|.|...
T Consensus 13 P~~V~v~i~~~~v~VkGp~G-----------------~L~~--~~~~-----~~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 13 PEGVTVEIEGLVVTVKGPKG-----------------ELTR--DFWY-----PGVTISVEDGKVVIETE 57 (180)
T ss_pred CCCCEEEEECCEEEEECCCe-----------------EEEE--EecC-----CcEEEEEECCEEEEEEC
Confidence 68899999999999998643 2222 3332 13556678898888755
No 80
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=35.28 E-value=52 Score=21.63 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=17.2
Q ss_pred EcCCCcc-cceEEEEECCEEEEE
Q 044098 111 DMPGLSK-EDVRVSVQQNTQIIK 132 (201)
Q Consensus 111 dlPG~~~-edI~V~v~~~~L~I~ 132 (201)
+-.||.. ..|+|++.+|.|+|+
T Consensus 34 ~~aGF~~G~~v~V~v~~g~lvIt 56 (57)
T PF08845_consen 34 EEAGFTIGDPVKVRVMPGCLVIT 56 (57)
T ss_pred HHhCCCCCCEEEEEEECCEEEEe
Confidence 4457744 788999999999986
No 81
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=35.14 E-value=95 Score=20.80 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCC-CcccceEEEEECCEEEEEEeecC
Q 044098 103 DNNLILKMDMPG-LSKEDVRVSVQQNTQIIKGEGPQ 137 (201)
Q Consensus 103 ~d~y~l~~dlPG-~~~edI~V~v~~~~L~I~g~~~~ 137 (201)
+..|.+.++|.+ +.+++.+..+.++.|.|.-.+..
T Consensus 41 ~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 41 GSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CCeEEEecccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 457999999997 68899999999999999866543
No 82
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=34.71 E-value=76 Score=25.49 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=30.6
Q ss_pred ccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECCEEEEEEe
Q 044098 117 KEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 117 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lP 185 (201)
|++|+|+++++.++|+|... +.++.+. |. .++...++|.|.|..+
T Consensus 7 P~~V~v~i~~~~i~vkGp~G-----------------~L~~~~~-~~------~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEGNIVTVKGPKG-----------------EVTRELW-YP------GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeCCEEEEECCCe-----------------EEEEEEe-CC------cEEEEEeCCEEEEEeC
Confidence 58899999999999998642 2233221 33 3445678888888754
No 83
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=34.67 E-value=18 Score=28.56 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=17.0
Q ss_pred CCCCCCCCceEEEEECCEEEEEEe
Q 044098 162 PSNLYKFDDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 162 P~~v~d~~~I~A~~~nGvL~I~lP 185 (201)
-+++ ..+.-.+.|.||||+|.|+
T Consensus 66 ~e~~-~~~~~Dv~y~~GVLTl~lg 88 (156)
T KOG3413|consen 66 AEEV-PGEGFDVDYADGVLTLKLG 88 (156)
T ss_pred Hhhc-CccccccccccceEEEEec
Confidence 3444 3355568899999999998
No 84
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=34.24 E-value=31 Score=23.10 Aligned_cols=21 Identities=33% Similarity=0.716 Sum_probs=18.3
Q ss_pred CcccceEEEEECCEEEEEEee
Q 044098 115 LSKEDVRVSVQQNTQIIKGEG 135 (201)
Q Consensus 115 ~~~edI~V~v~~~~L~I~g~~ 135 (201)
++.+.|.|....+.|.|+|+.
T Consensus 23 f~~~~I~l~t~~g~l~I~G~~ 43 (66)
T PF07873_consen 23 FDDEEIRLNTKKGKLTIKGEG 43 (66)
T ss_dssp EETTEEEEEETTEEEEEEEEE
T ss_pred ECCCEEEEEeCCEEEEEECce
Confidence 567889999999999999985
No 85
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=34.23 E-value=1.3e+02 Score=22.83 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=16.1
Q ss_pred CCeEEEEEEcCC-CcccceEEEEECCEEEEEE
Q 044098 103 DNNLILKMDMPG-LSKEDVRVSVQQNTQIIKG 133 (201)
Q Consensus 103 ~d~y~l~~dlPG-~~~edI~V~v~~~~L~I~g 133 (201)
.....+.+.||- .+-++|++....|.+.|.+
T Consensus 117 ~~~~~i~I~lP~~~~l~~i~i~~~~G~i~i~~ 148 (166)
T PF13349_consen 117 DNKSKITIYLPKDYKLDKIDIKTSSGDITIED 148 (166)
T ss_pred CCCcEEEEEECCCCceeEEEEEeccccEEEEc
Confidence 344555555553 2345555555555555543
No 86
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=34.05 E-value=57 Score=25.32 Aligned_cols=26 Identities=27% Similarity=0.555 Sum_probs=21.7
Q ss_pred CCCcccceEEEEECCEEEEEEeecCc
Q 044098 113 PGLSKEDVRVSVQQNTQIIKGEGPQN 138 (201)
Q Consensus 113 PG~~~edI~V~v~~~~L~I~g~~~~~ 138 (201)
.|+...+++|.+++|.++++|.....
T Consensus 38 ~~~~~~~i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 38 QGLGDADVNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred cCCCcCCceEEEeCCEEEEEEEeCCH
Confidence 47777889999999999999987654
No 87
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=33.96 E-value=94 Score=20.98 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=25.8
Q ss_pred EEEEEEECCCCCCCCCceEEEEECCEEEEEEe
Q 044098 154 RYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 154 ~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lP 185 (201)
...-.|.+|..+ ..+.++..+.+.-|.|.++
T Consensus 9 ~V~i~i~~~~~~-~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 9 EVTVTIPLPEGT-KSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEEECCCCC-cceeEEEEEEcCEEEEEEC
Confidence 355667889988 8999999999988888886
No 88
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=33.81 E-value=42 Score=24.75 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=15.1
Q ss_pred CceEEEEECCEEEEEEe
Q 044098 169 DDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 169 ~~I~A~~~nGvL~I~lP 185 (201)
..+.+++.+|||+|+++
T Consensus 28 ~d~D~e~~~gVLti~f~ 44 (105)
T cd00503 28 ADIDVETQGGVLTLTFG 44 (105)
T ss_pred cCEeeeccCCEEEEEEC
Confidence 56788899999999998
No 89
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=32.86 E-value=60 Score=24.01 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.1
Q ss_pred CceEEEEECCEEEEEEeCc
Q 044098 169 DDIKAGMKNGVLKIVVPKV 187 (201)
Q Consensus 169 ~~I~A~~~nGvL~I~lPK~ 187 (201)
..+.+++.+|||+|.++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 4688999999999999643
No 90
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=30.48 E-value=46 Score=24.61 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.7
Q ss_pred eEEEEECCEEEEEEeCc
Q 044098 171 IKAGMKNGVLKIVVPKV 187 (201)
Q Consensus 171 I~A~~~nGvL~I~lPK~ 187 (201)
+.+++.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 77889999999999853
No 91
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=30.39 E-value=76 Score=25.58 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=27.3
Q ss_pred EEEEEEcC-CCcccceEEEEE-CCEEEEEEeecCcC
Q 044098 106 LILKMDMP-GLSKEDVRVSVQ-QNTQIIKGEGPQNE 139 (201)
Q Consensus 106 y~l~~dlP-G~~~edI~V~v~-~~~L~I~g~~~~~~ 139 (201)
|.=+.-|| |++++.|.=.+. +|.|+|+|......
T Consensus 117 F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 117 FVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EEEEecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 33356788 899999999997 69999999876653
No 92
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=30.12 E-value=1.4e+02 Score=24.46 Aligned_cols=50 Identities=20% Similarity=-0.011 Sum_probs=30.9
Q ss_pred cceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEEEEECCEEEEEEe
Q 044098 118 EDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVP 185 (201)
Q Consensus 118 edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lP 185 (201)
..+++..+.+.+.|+|..+.-.. .=.+.... +.=.++-+|++|.|.+.==
T Consensus 131 ~~i~v~~~~~~V~V~Gtlkt~vg-----------------~~~~~~~~-k~Y~l~~~y~~G~l~L~~f 180 (188)
T PRK13726 131 TSVRVWPQYGRVDIRGVLKTWIG-----------------DSKPFTEI-KHYILILKRENGVTWLDNF 180 (188)
T ss_pred eeEEEccCCCEEEEEEEEEEEEC-----------------CcccCchh-eEEEEEEEEcCCEEEEEEE
Confidence 56677777888888887654311 00111212 4456778889999988643
No 93
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=30.09 E-value=51 Score=24.23 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=14.7
Q ss_pred ceEEEEECCEEEEEEeC
Q 044098 170 DIKAGMKNGVLKIVVPK 186 (201)
Q Consensus 170 ~I~A~~~nGvL~I~lPK 186 (201)
.+.+++.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 47788899999999984
No 94
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=28.65 E-value=1.2e+02 Score=21.72 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=26.7
Q ss_pred eEEEEEEECCCCCCCCCceEEEEECCEEEEEE
Q 044098 153 RRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVV 184 (201)
Q Consensus 153 ~~f~r~i~LP~~v~d~~~I~A~~~nGvL~I~l 184 (201)
..-.-+|.||.++ ..+.+...++..-|+|.+
T Consensus 15 ~eV~v~i~lp~~~-~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 15 DEVFIEVNVPPGT-RAKDVKCKLGSRDISLAV 45 (93)
T ss_pred CEEEEEEECCCCC-ceeeEEEEEEcCEEEEEE
Confidence 3455677899999 999999999999999987
No 95
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=28.02 E-value=1.4e+02 Score=24.33 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.5
Q ss_pred cccceEEEEECCEEEEEEee
Q 044098 116 SKEDVRVSVQQNTQIIKGEG 135 (201)
Q Consensus 116 ~~edI~V~v~~~~L~I~g~~ 135 (201)
.|++++|+++++.++++|-+
T Consensus 11 ~P~gV~V~i~~~~v~vkGpk 30 (178)
T COG0097 11 IPAGVTVSIEGQVVTVKGPK 30 (178)
T ss_pred cCCCeEEEEeccEEEEECCC
Confidence 48999999999999999864
No 96
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=27.52 E-value=2.7e+02 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.274 Sum_probs=17.8
Q ss_pred CCCCCCCCceEEEEECCEEEEEEeCc
Q 044098 162 PSNLYKFDDIKAGMKNGVLKIVVPKV 187 (201)
Q Consensus 162 P~~v~d~~~I~A~~~nGvL~I~lPK~ 187 (201)
|..| .+........+|-++++||+-
T Consensus 152 p~~V-~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 152 PENV-VPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp TTSS-EEEEEEEEEETTEEEEEE-SS
T ss_pred CCEE-EEEEeeEEecCCEEEEEeCCC
Confidence 6777 666555666789999999974
No 97
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=27.41 E-value=44 Score=23.70 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.1
Q ss_pred cCCCcccceEEEEECCEEEEEEee
Q 044098 112 MPGLSKEDVRVSVQQNTQIIKGEG 135 (201)
Q Consensus 112 lPG~~~edI~V~v~~~~L~I~g~~ 135 (201)
+=-++.+.|.|....+.|.|+|+.
T Consensus 38 I~~y~~~~I~l~t~~G~l~I~G~~ 61 (85)
T TIGR02856 38 LVVFSPEEVKLNSTNGKITIEGKN 61 (85)
T ss_pred eEEECCCEEEEEcCceEEEEEccc
Confidence 334678999999999999999975
No 98
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=26.77 E-value=47 Score=23.68 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=17.3
Q ss_pred CCcccceEEEEECCEEEEEEee
Q 044098 114 GLSKEDVRVSVQQNTQIIKGEG 135 (201)
Q Consensus 114 G~~~edI~V~v~~~~L~I~g~~ 135 (201)
-|+++.|.+....+.|.|+|+.
T Consensus 21 sfd~~~I~l~T~~G~L~I~G~~ 42 (85)
T TIGR02892 21 SFDDEEILLETVMGFLTIKGQE 42 (85)
T ss_pred EECCCEEEEEeCcEEEEEEcce
Confidence 3567888888888888888874
No 99
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=25.38 E-value=3.2e+02 Score=22.24 Aligned_cols=39 Identities=8% Similarity=0.094 Sum_probs=30.6
Q ss_pred EcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcC
Q 044098 101 EDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNE 139 (201)
Q Consensus 101 E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~ 139 (201)
+.++.|+=++.||--..+-.++++.++.|.|.-++..+.
T Consensus 133 ~~~~~~~krv~L~~~~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 133 RVGEKYLKRVALPWPDPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred ecCCceEeeEecCCCccceeeEEEeCceEEEEEeecCCC
Confidence 344556668889866778889999999999998876653
No 100
>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]
Probab=23.87 E-value=2.7e+02 Score=26.37 Aligned_cols=54 Identities=13% Similarity=0.302 Sum_probs=40.4
Q ss_pred HHHhcCCCCCCCCCCcceEEEEcCCeEEEEEEcCCC-cccceEEEEECCEEEEEE
Q 044098 80 MDQFLDNPFVSPVSRRGWLAKEDDNNLILKMDMPGL-SKEDVRVSVQQNTQIIKG 133 (201)
Q Consensus 80 md~lf~~~~~~~~~~p~~dv~E~~d~y~l~~dlPG~-~~edI~V~v~~~~L~I~g 133 (201)
++.-|+++.......|.+-+..++|...+++.+|-. +.++|.|+.-.++|.|.-
T Consensus 275 Le~s~d~dg~e~~~~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~ 329 (596)
T KOG4379|consen 275 LESSGDHDGLENGGPPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKH 329 (596)
T ss_pred HhhccCCchhhccCCccceeeeccCcceEEEecccccccceEEEEecCceEEEEe
Confidence 333444444333356778999999999999999975 779999999888777753
No 101
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=23.85 E-value=91 Score=24.19 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=24.7
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEe
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGE 134 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~ 134 (201)
.+.. ++.+.|+++.|.---+.|++.+++++|.|+-+
T Consensus 14 ~l~~-g~~~~v~v~~~~~l~~~i~~~v~~g~L~I~~~ 49 (181)
T PF10988_consen 14 ELVQ-GDSPSVEVEADENLLDRIKVEVKDGTLKISYK 49 (181)
T ss_dssp EEEE--SS-EEEEEEEHHHHCCEEEEEETTEEEEEE-
T ss_pred EEEE-CCCcEEEEEEChhhcceEEEEEECCEEEEEEC
Confidence 3444 35567777777544588999999999999876
No 102
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=23.67 E-value=2.8e+02 Score=23.29 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=26.7
Q ss_pred EEEECCEEEEEEeecCcCCCC-CCCc-------ccceeeeEEEEEEECCC
Q 044098 122 VSVQQNTQIIKGEGPQNESES-GGGD-------DDQENGRRYSTRIDLPS 163 (201)
Q Consensus 122 V~v~~~~L~I~g~~~~~~~~~-~~~~-------~~e~~~~~f~r~i~LP~ 163 (201)
|.++++.|+|++.+....... ...+ .....+|.|+-++.||.
T Consensus 60 v~v~~G~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~ 109 (258)
T cd02178 60 VSVEDGNLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASN 109 (258)
T ss_pred eEEECCEEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCC
Confidence 677899999999876532100 0111 12346688999999985
No 103
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=22.87 E-value=86 Score=24.99 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=37.2
Q ss_pred cceEEEEcC--CeEEEEEEcCCC-cccceEEEEECCEEEEEEeecCcCCCCCCCccccee-eeEEEEEEECCCCCCCCCc
Q 044098 95 RGWLAKEDD--NNLILKMDMPGL-SKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQEN-GRRYSTRIDLPSNLYKFDD 170 (201)
Q Consensus 95 p~~dv~E~~--d~y~l~~dlPG~-~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~-~~~f~r~i~LP~~v~d~~~ 170 (201)
..+++.+.. +.+.|++.|.|. ..-.++|.|++....+....... .......+.. .....-+|.+|...
T Consensus 67 I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg~~~~~~~~~~~~---d~~~~r~g~~~G~~~~~~~~ipa~~----- 138 (167)
T PF14683_consen 67 IKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNGWSGPFPSAPFGN---DNAIYRSGIHRGNYRLYEFDIPASL----- 138 (167)
T ss_dssp EEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETTEE--------------S--GGGT---S---EEEEEE-TTS-----
T ss_pred EEEECCCCccCCcEEEEEEeccccCCCCEEEEEcCccCCccccccCC---CCceeeCceecccEEEEEEEEcHHH-----
Confidence 344555544 689999999998 77888888888443332211000 0011222333 22334568888876
Q ss_pred eEEEEEC--CEEEEEEeCcC
Q 044098 171 IKAGMKN--GVLKIVVPKVK 188 (201)
Q Consensus 171 I~A~~~n--GvL~I~lPK~~ 188 (201)
++. .+|++++++..
T Consensus 139 ----L~~G~Nti~lt~~~gs 154 (167)
T PF14683_consen 139 ----LKAGENTITLTVPSGS 154 (167)
T ss_dssp ----S-SEEEEEEEEEE-S-
T ss_pred ----EEeccEEEEEEEccCC
Confidence 443 36777777653
No 104
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=41 Score=31.10 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=52.5
Q ss_pred CcceEEEEcCCeEEEEEEcCCCcccceEEEEECCEEEEEEeecCcCCCCCCCcccceeeeEEEEEEECCCCCCCCCceEE
Q 044098 94 RRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIKA 173 (201)
Q Consensus 94 ~p~~dv~E~~d~y~l~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~e~~~~~f~r~i~LP~~v~d~~~I~A 173 (201)
.|.+-+..+++...|.+..|-.+...+.+...++....+ .+.|--++.+|..+.+...-.|
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~-------------------~~pyflrl~~p~~~~~d~~~n~ 63 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFS-------------------AGPYFLRLAGPGMVEDDARPNA 63 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHhhhhhhc-------------------cchhHHhhcCcchhhhhccccC
Confidence 567888999999999999996666666665555544443 3344455566665544444445
Q ss_pred EE--ECCEEEEEEeCcCcc
Q 044098 174 GM--KNGVLKIVVPKVKED 190 (201)
Q Consensus 174 ~~--~nGvL~I~lPK~~~~ 190 (201)
.| ++|-..|.+||..+.
T Consensus 64 s~d~kd~~~~vK~~K~~~~ 82 (466)
T KOG3247|consen 64 SYDAKDGYAHVKVPKFHPG 82 (466)
T ss_pred ccccccceeEEeecCCCcc
Confidence 55 579999999986543
No 105
>PF05309 TraE: TraE protein; InterPro: IPR007973 This family consists of several bacterial sex pilus assembly and synthesis proteins (TraE). Conjugal transfer of plasmids from donor to recipient cells is a complex process in which a cell-to-cell contact plays a key role. Many genes encoded by self-transmissible plasmids are required for various processes of conjugation, including pilus formation, stabilisation of mating pairs, conjugative DNA metabolism, surface exclusion and regulation of transfer gene expression []. The exact function of the TraE protein is unknown.; GO: 0000746 conjugation
Probab=22.11 E-value=1.8e+02 Score=23.35 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=15.8
Q ss_pred ccceEEEEECCEEEEEEeecC
Q 044098 117 KEDVRVSVQQNTQIIKGEGPQ 137 (201)
Q Consensus 117 ~edI~V~v~~~~L~I~g~~~~ 137 (201)
++++++....+.+.|+|..+.
T Consensus 130 ~~~i~~d~~~~~V~V~G~l~t 150 (187)
T PF05309_consen 130 PKSIEVDPETLTVFVTGTLKT 150 (187)
T ss_pred EeEEEEecCCCEEEEEEEEEE
Confidence 467777778888888888643
No 106
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=21.94 E-value=65 Score=23.49 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.2
Q ss_pred EEEEECCEEEEEEeCc
Q 044098 172 KAGMKNGVLKIVVPKV 187 (201)
Q Consensus 172 ~A~~~nGvL~I~lPK~ 187 (201)
.+++.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6778999999999643
No 107
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=21.87 E-value=2.6e+02 Score=18.78 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=25.1
Q ss_pred EEEEcCCeEEEEEEcCCCcccceEEEEECC---EEEEE
Q 044098 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQN---TQIIK 132 (201)
Q Consensus 98 dv~E~~d~y~l~~dlPG~~~edI~V~v~~~---~L~I~ 132 (201)
.+.-..+.|.|.+..+|+....+.|....+ .+.|.
T Consensus 38 ~i~~~~g~~~l~is~~Gy~~~~~~i~~~~~~~~~~~i~ 75 (88)
T PF13715_consen 38 SIKLPEGDYTLKISYIGYETKTITISVNSNKNTNLNIY 75 (88)
T ss_pred EEEEcCCCeEEEEEEeCEEEEEEEEEecCCCEEEEEEE
Confidence 333335669999999999998888888754 44444
No 108
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.53 E-value=7.9 Score=26.49 Aligned_cols=14 Identities=50% Similarity=0.458 Sum_probs=11.3
Q ss_pred CceEEEEECCEEEE
Q 044098 169 DDIKAGMKNGVLKI 182 (201)
Q Consensus 169 ~~I~A~~~nGvL~I 182 (201)
+-|.|.|+||||+=
T Consensus 5 kIIEaiYEnGVfKP 18 (67)
T COG2880 5 KIIEAIYENGVLKP 18 (67)
T ss_pred HHHHHHHhcccccc
Confidence 45778999999974
No 109
>PF10988 DUF2807: Protein of unknown function (DUF2807); InterPro: IPR021255 This bacterial family of proteins has no known function. ; PDB: 3JX8_A 3LJY_C 3LYC_A 3PET_A.
Probab=20.35 E-value=2.2e+02 Score=21.92 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=23.4
Q ss_pred EEEEEECCCCCCCCCceEEEEECCEEEEEEeCcCcc
Q 044098 155 YSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKED 190 (201)
Q Consensus 155 f~r~i~LP~~v~d~~~I~A~~~nGvL~I~lPK~~~~ 190 (201)
++-++.-|+++ .+.++.+.+||.|.|...+.-..
T Consensus 21 ~~v~v~~~~~l--~~~i~~~v~~g~L~I~~~~~~~~ 54 (181)
T PF10988_consen 21 PSVEVEADENL--LDRIKVEVKDGTLKISYKKNISG 54 (181)
T ss_dssp -EEEEEEEHHH--HCCEEEEEETTEEEEEE-SCCTC
T ss_pred cEEEEEEChhh--cceEEEEEECCEEEEEECCCcCC
Confidence 34555556654 58899999999999999865443
Done!