RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 044098
(201 letters)
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 88
Score = 77.6 bits (192), Expect = 4e-19
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRI 159
E D+ +++ D+PG KED++V V+ I GE + E E + + +S
Sbjct: 3 YETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSF 62
Query: 160 DLPSNLYKFDDIKAGMKNGVLKIVVPK 186
LP + D IKA ++NGVL I +PK
Sbjct: 63 RLPED-VDPDKIKASLENGVLTITLPK 88
>gnl|CDD|215655 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 101
Score = 74.2 bits (183), Expect = 1e-17
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRI 159
KED + ++K+D+PG E+++V V+ N ++KG+ + E + G ++ R +S +
Sbjct: 3 KEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHEKEEEDDHGLRSERSY-RSFSRKF 61
Query: 160 DLPSNLYKFDDIKAGMKNGVLKIVVPKVKEDEAK 193
LP N D +KA +K+GVL + VPK++ E K
Sbjct: 62 VLPEN-ADPDKVKASLKDGVLTVTVPKLEPPEKK 94
>gnl|CDD|223149 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 69.3 bits (170), Expect = 2e-15
Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 13/152 (8%)
Query: 44 RPDRSVSRRRDPSPSFFPDALDPFSPPRSLNQVLNLMDQFLDNPFVSPVSRRGWLAKEDD 103
P ++ R D P F L +F + P P +E D
Sbjct: 1 SPFEAMRNRFDFFPLLRD--SPGFDR---------LFREFGNLPESRPTGTPPVDIEETD 49
Query: 104 NNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQE-NGRRYSTRIDLP 162
+ + ++PG+ KED+ ++V+ NT I+GE + E E G +E + LP
Sbjct: 50 DEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLP 109
Query: 163 SNLYKFDDIKAGMKNGVLKIVVPKVKEDEAKN 194
+ + IKA KNG+L + +PK + +E K
Sbjct: 110 EKV-DPEVIKAKYKNGLLTVTLPKAEPEEKKP 140
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR).
Length = 80
Score = 67.6 bits (166), Expect = 3e-15
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRI 159
+ D+ +++ +D+PG+ KED++V V+ N I G+ + E + + + +
Sbjct: 2 YQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEE-------ERERSYGEFERSF 54
Query: 160 DLPSNLYKFDDIKAGMKNGVLKIVVPK 186
+LP + + KA ++NGVL+I +PK
Sbjct: 55 ELPED-VDPEKSKASLENGVLEITLPK 80
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers.
Length = 92
Score = 66.9 bits (164), Expect = 5e-15
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQI-IKGEGPQNESESGGGDDDQENGRR---- 154
KE + K D+PG+ KEDV+V V+ + I GE + E + G DD R
Sbjct: 5 KETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKG---DDWHRVERSSGR 61
Query: 155 YSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPK 186
+ R LP N D++KA ++NGVL + VPK
Sbjct: 62 FVRRFRLPENA-DADEVKAFLENGVLTVTVPK 92
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane.
Length = 93
Score = 60.2 bits (147), Expect = 2e-12
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 17/96 (17%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENG------R 153
KE D+ I++ D+PG KED+++ + I + ++ES+ D+ + G R
Sbjct: 6 KETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAK--RDESK----DEKDKKGNYIRRER 59
Query: 154 RYST---RIDLPSNLYKFDDIKAGMKNGVLKIVVPK 186
Y + LP N+ ++IKA +NGVLKI +PK
Sbjct: 60 YYGSFSRSFYLP-NV-DEEEIKAKYENGVLKITLPK 93
Score = 29.0 bits (66), Expect = 0.53
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 147 DDQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKEDEAKN 194
D +E Y DLP +K +DIK K+G L I + + + K+
Sbjct: 4 DIKETDDEYIVEADLPG--FKKEDIKLDYKDGYLTISAKRDESKDEKD 49
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers.
Length = 90
Score = 37.1 bits (87), Expect = 6e-04
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 98 LAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENG----- 152
+ K +NN + + + G S++D+ + V+ N + G+ E ++++E
Sbjct: 5 IEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEE------NEEREYLHRGIA 58
Query: 153 -RRYSTRIDLPSNLYKFDDIK---AGMKNGVLKI 182
R + +L D +K A ++NG+L I
Sbjct: 59 KRAFERSFNLA------DHVKVKGAELENGLLTI 86
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps.
Length = 83
Score = 34.4 bits (80), Expect = 0.005
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRI 159
+DD + +D+ G E+++V V N +++G+ E E G +E RRY
Sbjct: 3 NDDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGK--HEEREDEHGYVSREFTRRY---- 56
Query: 160 DLPSNLYKFDDIKAGM-KNGVLKIVVPK 186
LP D + + + +GVL I PK
Sbjct: 57 QLPEG-VDPDSVTSSLSSDGVLTIEAPK 83
>gnl|CDD|205122 pfam12875, DUF3826, Protein of unknown function (DUF3826). This is
a putative sugar-binding family.
Length = 187
Score = 29.0 bits (65), Expect = 1.4
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 155 YSTRIDLPSNLYKF------DDIKAGMKNGVLKI-------VVPKVKEDEAKNVFKVNVE 201
Y P++L + + +K GM GVL + ++P + E+E ++ VE
Sbjct: 79 YRLHFAFPADLSLYLTEEQIEAVKDGMTYGVLPVTYKAYQDMIPSLTEEEKAQIYAWLVE 138
>gnl|CDD|151771 pfam11330, DUF3132, Protein of unknown function (DUF3132). This
viral family of proteins are 55kDa. No function is
currently known.
Length = 124
Score = 28.5 bits (63), Expect = 1.4
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 13 SASRLLFSKLIRPASVSRSFNTNAQVVDVER 43
S+S FSK I P SV R+F AQ ++VER
Sbjct: 1 SSSHYFFSKNITPTSVERNFGGVAQ-LEVER 30
>gnl|CDD|237687 PRK14357, glmU, bifunctional N-acetylglucosamine-1-phosphate
uridyltransferase/glucosamine-1-phosphate
acetyltransferase; Provisional.
Length = 448
Score = 29.0 bits (65), Expect = 1.6
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 101 EDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQN----------ESESGGGDDDQE 150
D+ LIL D+P +S+ ++ ++I+ + E +G G ++
Sbjct: 88 PGDDLLILYGDVPLISENTLK-------RLIEEHNRKGADVTILVADLEDPTGYGRIIRD 140
Query: 151 NGR-RYSTRIDLPSNLYKFDDIKAGM---KNGVLKIVVPKVKEDEAK 193
G+ R D P K +I G+ L V+PK+K + AK
Sbjct: 141 GGKYRIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAK 187
>gnl|CDD|236612 PRK09685, PRK09685, DNA-binding transcriptional activator FeaR;
Provisional.
Length = 302
Score = 28.5 bits (64), Expect = 2.1
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 57 PSFFPDALDPFSPPRSLNQVLNLMDQFLDNPFVSPVSRRGWLAKE 101
P+ R +V+ L+DQ + + P W+A E
Sbjct: 183 PALHQRESVQPRRERQFQKVVALIDQSIQEEILRP----EWIAGE 223
>gnl|CDD|165425 PHA03154, PHA03154, hypothetical protein; Provisional.
Length = 304
Score = 28.5 bits (63), Expect = 2.1
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 153 RRYSTRIDLPSNLYKFDD--IKAGMKNGVLKIVVPKVKE 189
+RYS DL N + D IKA KN +L VVPK +
Sbjct: 8 QRYSLISDLHKNFHYVDINVIKAEFKNVILDTVVPKFSQ 46
>gnl|CDD|178744 PLN03205, PLN03205, ATR interacting protein; Provisional.
Length = 652
Score = 28.6 bits (63), Expect = 2.5
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 15/115 (13%)
Query: 61 PDALDPFSPPRSLNQ--VLNLMDQFLD----------NPFVSPVSRRGWLAKEDDNNLIL 108
PD +SPPR L+Q V D +D P S R +++D L
Sbjct: 80 PDPFISYSPPRELSQRVVGGFNDALMDYSNSTVVTAAKPISPNSSNRCCDSEKDLEIDRL 139
Query: 109 KMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDD--QENGRRYSTRIDL 161
K ++ +SK+ + V Q+ +Q+ KG+ + ES++ DD+ Q + S RIDL
Sbjct: 140 KKELERVSKQLLDVE-QECSQLKKGKNKEMESKNLCADDNKGQCSTVHASKRIDL 193
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 28.1 bits (63), Expect = 3.4
Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 18/84 (21%)
Query: 51 RRRDPSPSFF-------PDALDPFSPPRSLNQVLNLMDQFLDNPFVSPVSRRGWLAKEDD 103
RRRDP+ FF P + P+ PP+ D + D P W ED
Sbjct: 194 RRRDPTKPFFLKMSFARPHS--PYDPPKR------YFDMYKDADIPDPHI-GDWEYAEDQ 244
Query: 104 NNLILKMDMP--GLSKEDVRVSVQ 125
+ +D L +E R +
Sbjct: 245 DPEGGSIDALRGNLGEEYARRARA 268
>gnl|CDD|218706 pfam05703, Auxin_canalis, Auxin canalisation. This domain is
frequently found at the N-terminus of proteins
containing pfam08458 at the C-terminus. It is a
component of the auto-regulatory loop which enables
auxin canalisation by recruitment of the PIN1 auxin
efflux protein to the cell membrane.
Length = 226
Score = 27.1 bits (60), Expect = 5.2
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 5/93 (5%)
Query: 3 LSSSMALRRASASRLLFSKLIRPASVSRSFNTNAQVVDVERRPDRSVSRRRDPSPSFFPD 62
LS S +L + S+ L K+ + + +S N + +V DR S+ SP P
Sbjct: 11 LSRSWSLSASEISKALHPKVRQGSELSFVGNRTSGLV-----MDRISSQPDADSPPISPR 65
Query: 63 ALDPFSPPRSLNQVLNLMDQFLDNPFVSPVSRR 95
LD R N + F S ++
Sbjct: 66 KLDDVVKLRRANGRKTIGRWFHHRKESSGNRKK 98
>gnl|CDD|177062 CHL00140, rpl6, ribosomal protein L6; Validated.
Length = 178
Score = 27.2 bits (61), Expect = 5.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 13/47 (27%)
Query: 96 GWLAKEDDNNLIL--------KMDMPGLSKEDVRVSVQQNTQI-IKG 133
G+ A+ +LIL K+ +P + V V+ NT I IKG
Sbjct: 93 GYRAQVQGKDLILNLGYSHPVKIKIP----PGISVEVENNTNITIKG 135
>gnl|CDD|183228 PRK11609, PRK11609, nicotinamidase/pyrazinamidase; Provisional.
Length = 212
Score = 27.3 bits (61), Expect = 5.2
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 132 KGEGPQNESESGGGDDDQENGRRYSTRID 160
KGE P +S S D NG R T +D
Sbjct: 110 KGENPLIDSYSAFFD----NGHRQKTALD 134
>gnl|CDD|227284 COG4948, COG4948, L-alanine-DL-glutamate epimerase and related
enzymes of enolase superfamily [Cell envelope
biogenesis, outer membrane / General function prediction
only].
Length = 372
Score = 27.0 bits (60), Expect = 7.0
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 147 DDQENGRRYSTRIDLP----SNLYKFDDIKAGMKNGVLKIVVPKV 187
DD E R P ++Y D + ++ G + IV P +
Sbjct: 226 DDLEGLRELRAATSTPIAAGESVYTRWDFRRLLEAGAVDIVQPDL 270
>gnl|CDD|236973 PRK11767, PRK11767, SpoVR family protein; Provisional.
Length = 498
Score = 26.7 bits (60), Expect = 10.0
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
Query: 23 IRPASVSRSFN-----TNAQVVDVERRPDRS 48
IR ++SR +N N QV +V+ R DRS
Sbjct: 417 IR-EALSRQYNLSNLEPNIQVWNVDLRGDRS 446
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.369
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,247,916
Number of extensions: 966703
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 658
Number of HSP's successfully gapped: 30
Length of query: 201
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 109
Effective length of database: 6,857,034
Effective search space: 747416706
Effective search space used: 747416706
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.4 bits)