RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 044098
(201 letters)
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 86.3 bits (214), Expect = 9e-22
Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 16/158 (10%)
Query: 52 RRDPSPSFFPDALD-----PFSPPRSLNQVLNLMDQFLDNPFVSPVSRRGWLA------K 100
RDP S F P + + L +++P V+ +
Sbjct: 3 GRDPFDSLFERMFKEFFATPMTGTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISII 62
Query: 101 EDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYST--- 157
E D ++ + +PG++KED+ ++ +T I+ + E
Sbjct: 63 EGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEI-PEEEEIYR 121
Query: 158 RIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKEDEAKNV 195
I LP+ + K ++ A +NGVL +++PK + K +
Sbjct: 122 TIKLPATV-KEENASAKFENGVLSVILPKAESSIKKGI 158
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 83.9 bits (208), Expect = 5e-21
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 23/163 (14%)
Query: 48 SVSRRRDPSPSFFPDALDPFSPPRSLNQVLNLMDQFLDNPFVSPVSRRGWLA-----KED 102
S+ RR + DPF+ + + + KE
Sbjct: 2 SIVRRSNV--------FDPFA--DLWADPFDTFRSIVPAISGGGSETAAFANARMDWKET 51
Query: 103 DNNLILKMDMPGLSKEDVRVSVQQNTQ-IIKGEGPQNESESGGGDDDQENGRRYST---R 158
+ K D+PG+ KE+V+V V+ ++ GE + + + E R R
Sbjct: 52 PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVE--RSSGKFVRR 109
Query: 159 IDLPSNLYKFDDIKAGMKNGVLKIVVPKVKEDEAKNVFKVNVE 201
L + K +++KAG++NGVL + VPK E + V + +
Sbjct: 110 FRLLEDA-KVEEVKAGLENGVLTVTVPK-AEVKKPEVKAIQIS 150
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 81.0 bits (201), Expect = 2e-20
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYST-- 157
KE+ N+ +L D+PG+ + V + + I+GE S E RRY +
Sbjct: 10 KEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIE--RRYGSFH 67
Query: 158 -RIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKE 189
R LP + D I A +NGVL+I +PK
Sbjct: 68 RRFALPDSA-DADGITAAGRNGVLEIRIPKRPA 99
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 75.0 bits (185), Expect = 6e-18
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQ-QNTQIIKGEGPQNESESGGGDDDQENGRRYSTR 158
E+ L++ D+ G +KE ++ V QN II+ E E G + +
Sbjct: 30 YEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAE---REITEPGVKYLTQRPKYVRKV 86
Query: 159 IDLPSNLYKFDDIKAGMKNGVLKIVVPKVKEDEAK 193
I LP N+ K +I +NGVL I +P K
Sbjct: 87 IRLPYNVAKDAEISGKYENGVLTIRIPIAGTSVFK 121
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 55.9 bits (135), Expect = 6e-11
Identities = 15/96 (15%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 99 AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTR 158
+ + + +D+ S E+++V V + + G+ + + D+ R + +
Sbjct: 1 GAMEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQ------DEHGFISREFHRK 54
Query: 159 IDLPSNLYKFDDIKAGM-KNGVLKIVVPKVKEDEAK 193
+P++ I + M +GVL + P+ + +
Sbjct: 55 YRIPAD-VDPLTITSSMSSDGVLTVNGPRKQVSGPE 89
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 54.8 bits (132), Expect = 2e-10
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 8/95 (8%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRI 159
D + +D+ S E++ V V + + + D+ R + R
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERP------DEHGFIAREFHRRY 60
Query: 160 DLPSNLYKFDDIKAGM-KNGVLKIVVPKVKEDEAK 193
LP + + + GVL I +
Sbjct: 61 RLPPG-VDPAAVTSALSPEGVLSIQATPASAQASL 94
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 54.1 bits (130), Expect = 4e-10
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 100 KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRI 159
+ D + ++ +D+ S ED+ V VQ++ I G+ + + + G R + R
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYI------SREFHRRY 61
Query: 160 DLPSNLYKFDDIKAGM-KNGVLKIVVPKVK--EDEAKNVFKVNVE 201
LPSN + + +G+L PK+ D + + V
Sbjct: 62 RLPSN-VDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 53.5 bits (129), Expect = 4e-10
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 99 AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTR 158
+ + +D+ + +++ V + I G+ + E G R ++ +
Sbjct: 2 GSHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHG------YISRCFTRK 55
Query: 159 IDLPSNLYKFDDIKAGM-KNGVLKIVVPKVK 188
LP + + + G L + P K
Sbjct: 56 YTLPPG-VDPTQVSSSLSPEGTLTVEAPMPK 85
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 54.6 bits (131), Expect = 1e-09
Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 39/171 (22%)
Query: 57 PSFFPDALDPFSPPRSLNQVLNLMDQFLDNPF-----------VSPVSRRGWL------- 98
+ PF P L DQF +SP R
Sbjct: 7 HPWIRRPFFPFHSPSRL------FDQFFGEHLLESDLFPTSTSLSPFYLRPPSFLRAPSW 60
Query: 99 -------AKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQEN 151
+ + + + +D+ S E+++V V + + G+ + + E G
Sbjct: 61 FDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHG------FI 114
Query: 152 GRRYSTRIDLPSNLYKFDDIKAGM-KNGVLKIVVPKVKEDEAKNVFKVNVE 201
R + + +P++ I + + +GVL + P+ + + + E
Sbjct: 115 SREFHRKYRIPAD-VDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITRE 164
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 49.1 bits (116), Expect = 2e-07
Identities = 18/155 (11%), Positives = 43/155 (27%), Gaps = 24/155 (15%)
Query: 43 RRPDRSVSRRRDPSPSFFPDALDPFSPPRSLNQVLNLMDQFLDNPF-----------VSP 91
+ + S P + V+ M F +
Sbjct: 44 QSLHDDIVNMHRNLFSLEP--FTAM--DNAFESVMKEMSAIQPREFHPELEYTQPGELDF 99
Query: 92 VSRRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQEN 151
+ + K+ + + ++ E++ + +N +++ + G
Sbjct: 100 LKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQ---KSVACGDAAMS--- 153
Query: 152 GRRYSTRIDLPSNLYKFDDIKAGM-KNGVLKIVVP 185
I LP + + I+A + + VL I P
Sbjct: 154 -ESVGRSIPLPPS-VDRNHIQATITTDDVLVIEAP 186
Score = 43.3 bits (101), Expect = 2e-05
Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 113 PGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLYKFDDIK 172
P + +DV+V + N + G E + R + P +
Sbjct: 243 PHFAPKDVKVWAKGNKVYVHGV---TGKEEKTENASHSEHREFYKAFVTPEV-VDASKTQ 298
Query: 173 AGMKNGVLKIVVPKVK 188
A + +G++ + P K
Sbjct: 299 AEIVDGLMVVEAPLFK 314
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.071
Identities = 26/183 (14%), Positives = 49/183 (26%), Gaps = 68/183 (37%)
Query: 11 RASASRLLFSKLIR-PASVSRSFNTNAQVVDVERRPD------RSVSRRRDPSPSF--FP 61
S + LF L+ + + F V +V R + + +R PS +
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF-----VEEVLR-INYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 62 DALD-------PFSP---PR-----SLNQVL-NL----------M--------------D 81
+ D F+ R L Q L L +
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 82 QFLDNPFVSPVSRRGWL----AKEDD------NNLILKMDMPGLSKEDVRVSVQQNTQII 131
+ + WL + L+ ++D S+ D +++ I
Sbjct: 174 YKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 132 KGE 134
+ E
Sbjct: 231 QAE 233
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 30.3 bits (69), Expect = 0.46
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 47 RSVSRRRDPSPSFFPDALDPFSPPRSLNQVLNLMDQFLDNPFVSPV--SRRGWLAKEDDN 104
++ R+ F P R + + + + Q + RR L + ++
Sbjct: 172 EGITASRNTLAKFLPG---KRKQLREVRESIRFLRQVGRD-----WVQRRREALKRGEEV 223
Query: 105 N-----LILKMDMPGLSKEDVR 121
ILK + E +
Sbjct: 224 PADILTQILKAEEGAQDDEGLL 245
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 29.9 bits (67), Expect = 0.53
Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 28/149 (18%)
Query: 34 TNAQVVDVERRPDRSVSRRRDPSPSFFPDALDPFSPPRSLNQVLNLMDQFLDNPFVSPVS 93
T V+ V + + +S P P +++ + F++ +P
Sbjct: 244 TIGGVIQVSSQTEGDLSAEFTPLSVTVV----PDVTKGDWQPLIDALPNFVEQAEQAPKP 299
Query: 94 RRGWLAKEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGEGPQNESESGGGDDDQENGR 153
D +N +++ +PG K+ V++ Q ++ G Q R
Sbjct: 300 -----ITIDTHNRQVRLFLPGFDKKQVKL-TQYGPEVTVEAGDQ---------------R 338
Query: 154 RYSTRIDLPSNLYKFDDIKAGMKNGVLKI 182
R I LP L A +N L I
Sbjct: 339 R---NIFLPPALSGRPITGAKFQNNYLII 364
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 1.1
Identities = 33/179 (18%), Positives = 53/179 (29%), Gaps = 81/179 (45%)
Query: 5 SSM-ALRRASASRLLFSKLIR------PAS--VSRS-FNTNAQVVDVERRPDRSVSRRRD 54
S M ++ + ++ + PA V S N +V VS
Sbjct: 336 SPMLSISNLTQEQVQ--DYVNKTNSHLPAGKQVEISLVNGAKNLV---------VS---- 380
Query: 55 PSPSFFPDALDPFSPPRSLNQVLNL----------MDQ---------------FL--DNP 87
PP+SL LNL +DQ FL +P
Sbjct: 381 -------------GPPQSL-YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 88 FVSPVSRRGWLAKEDDNNLILKMDMPG----LSKEDVRVSVQQNTQIIKGEGPQNESES 142
F S L D ++ D+ + +D+++ V +T G + S S
Sbjct: 427 FHSH-----LLVPASD---LINKDLVKNNVSFNAKDIQIPV-YDTF--DGSDLRVLSGS 474
Score = 26.6 bits (58), Expect = 8.3
Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 9/48 (18%)
Query: 48 SVSRRRDPSPSFFPDALDPFSPPRSLNQVLNLMDQFLDNPFV--SPVS 93
+ R + F L+ + + L D ++ P+S
Sbjct: 197 ELIRTTLDAEKVFTQGLN-------ILEWLENPSNTPDKDYLLSIPIS 237
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome
biogenesis, methyltransferase, processing, ribosomal
protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB:
3oij_A* 3oin_A* 2v3j_A 2v3k_A*
Length = 253
Score = 25.7 bits (56), Expect = 9.4
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 67 FSPPRSLNQVLNLMDQFLDNPFVSPVSRRGWLAKEDDNNLILKMDMP----GLSKEDVRV 122
PR+ + LM Q L + V+ L K N + + LS + +
Sbjct: 129 VRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVI 188
Query: 123 SVQQNTQIIKGEGP 136
VQ + + +
Sbjct: 189 RVQDYIEKLDDDES 202
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.369
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,985,643
Number of extensions: 175392
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 25
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.1 bits)