RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 044098
         (201 letters)



>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 69.7 bits (170), Expect = 3e-16
 Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 7/114 (6%)

Query: 92  VSRRGWLA---KEDDNNLILKMDMPGLSKEDVRVSVQQNTQIIKGE-GPQNESESGGGDD 147
           +S +G++     E D ++ +   +PG++KED+ ++   +T  I+ +  P   +ES     
Sbjct: 5   ISGKGFMPISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIY 64

Query: 148 DQENGRRYSTRIDLPSNLYKFDDIKAGMKNGVLKIVVPKVKEDEAKNVFKVNVE 201
            +        R        K ++  A  +NGVL +++PK +    K    +N+E
Sbjct: 65  SEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPKAESSIKK---GINIE 115


>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score = 69.0 bits (168), Expect = 9e-16
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 7/155 (4%)

Query: 48  SVSRRRDPSPSFFPDALDPFSPPRSLNQVLNLMDQFLDNPFVSPVSRRGWLAKEDDNNLI 107
           S+ RR +    F     DPF   RS+   ++           + +       KE     +
Sbjct: 1   SIVRRSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMD-----WKETPEAHV 55

Query: 108 LKMDMPGLSKEDVRVSVQQ-NTQIIKGEGPQNESESGGGDDDQENGRRYSTRIDLPSNLY 166
            K D+PG+ KE+V+V V+  N  ++ GE  + + +        E       R        
Sbjct: 56  FKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDA 115

Query: 167 KFDDIKAGMKNGVLKIVVPKVKEDEAKNVFKVNVE 201
           K +++KAG++NGVL + VPK +  + + V  + + 
Sbjct: 116 KVEEVKAGLENGVLTVTVPKAEVKKPE-VKAIQIS 149


>d1q25a1 b.64.1.1 (A:7-129) Cation-independent mannose-6-phosphate
           receptor (MIR-receptor) {Cow (Bos taurus) [TaxId: 9913]}
          Length = 123

 Score = 28.1 bits (62), Expect = 0.39
 Identities = 8/85 (9%), Positives = 27/85 (31%), Gaps = 13/85 (15%)

Query: 90  SPVSRRGWLAKEDDNNLILKMDMPG-LSKED-------VRVSVQQNTQIIKGEGPQNESE 141
             +    W A +  NN++ K+++ G +               ++ ++    G+     + 
Sbjct: 4   PELCSYTWEAVDTKNNMLYKINICGNMGVAQCGPSSAVCMHDLKTDSFHSVGDSLLKTAS 63

Query: 142 SG-----GGDDDQENGRRYSTRIDL 161
                     + ++   +  + I  
Sbjct: 64  RSLLEFNTTVNCKQQNHKIQSSITF 88


>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain
          {Fungi (Fusarium sp.) [TaxId: 29916]}
          Length = 102

 Score = 27.0 bits (60), Expect = 0.68
 Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)

Query: 22 LIRPASVSRSFNTNAQVV--DVERRPDRSVSRRRDPSPSFFP 61
          LIR  + + + NT+ + +   +      S S +         
Sbjct: 36 LIRYGTATHTVNTDQRRIPLTLTNNGGNSYSFQVPSDSGVAL 77


>d1pgsa1 b.121.1.1 (A:4-140) Peptide:N-glycosidase F, PNGase F
           {Flavobacterium meningosepticum [TaxId: 238]}
          Length = 137

 Score = 24.0 bits (52), Expect = 9.3
 Identities = 5/30 (16%), Positives = 9/30 (30%), Gaps = 5/30 (16%)

Query: 143 GGGDDDQENGRRYSTRIDLPSNLYKFDDIK 172
           G G       +        P+++     IK
Sbjct: 17  GDG-----LSQSAEGTFTFPADVTTVKTIK 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.369 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 710,126
Number of extensions: 32517
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 6
Length of query: 201
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 120
Effective length of database: 1,295,466
Effective search space: 155455920
Effective search space used: 155455920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.8 bits)