BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044104
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HPC|A Chain A, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The
Two Forms Of The H-Protein, A Lipoamide-Containing
Protein Of The Glycine Decarboxylase
pdb|1HPC|B Chain B, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The
Two Forms Of The H-Protein, A Lipoamide-Containing
Protein Of The Glycine Decarboxylase
pdb|1DXM|A Chain A, Reduced Form Of The H Protein From Glycine Decarboxylase
Complex
pdb|1DXM|B Chain B, Reduced Form Of The H Protein From Glycine Decarboxylase
Complex
pdb|1HTP|A Chain A, Refined Structures At 2 Angstroms And 2.2 Angstroms Of The
Two Forms Of The H-Protein, A Lipoamide-Containing
Protein Of The Glycine Decarboxylase Complex
Length = 131
Score = 181 bits (460), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 85/125 (68%), Positives = 104/125 (83%)
Query: 4 LKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATS 63
LKYA SHEWVK +G+ ATIGITDHAQDHLG+VV+VELPE GV+V + FGAVESVKATS
Sbjct: 7 LKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATS 66
Query: 64 DVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 123
DVNSP+SG+V+EVN L+ P L+NSSPYEDGW+IK++ + EL+ L+ A +YTKFCEE
Sbjct: 67 DVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEE 126
Query: 124 EDSKH 128
ED+ H
Sbjct: 127 EDAAH 131
>pdb|2KA7|A Chain A, Nmr Solution Structure Of Tm0212 At 40 C
Length = 124
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 90/124 (72%)
Query: 1 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60
+K KY +HEWV ++ AT+GIT+HAQ+ LGDVVYV+LPEVG VK+ ++ESVK
Sbjct: 1 MKMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVK 60
Query: 61 ATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKF 120
A +DV +P+SGK+VEVNE+L + P L+N P +GW+ K+E+ + GEL+ L+D Y +F
Sbjct: 61 AAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEF 120
Query: 121 CEEE 124
C +E
Sbjct: 121 CAQE 124
>pdb|1ZKO|A Chain A, Crystal Structure Of Glycine Cleavage System H Protein
(Tm0212) From Thermotoga Maritima At 1.65 A Resolution
pdb|1ZKO|B Chain B, Crystal Structure Of Glycine Cleavage System H Protein
(Tm0212) From Thermotoga Maritima At 1.65 A Resolution
Length = 136
Score = 134 bits (338), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 61/119 (51%), Positives = 86/119 (72%)
Query: 6 YADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDV 65
Y +HEWV ++ AT+GIT+HAQ+ LGDVVYV+LPEVG VK+ ++ESVKA +DV
Sbjct: 18 YTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADV 77
Query: 66 NSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 124
+P+SGK+VEVNE+L + P L+N P +GW+ K E+ + GEL+ L+D Y +FC +E
Sbjct: 78 YAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKXEISDEGELEDLLDEQAYQEFCAQE 136
>pdb|2EDG|A Chain A, Solution Structure Of The Gcv_h Domain From Mouse Glycine
Length = 130
Score = 129 bits (323), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 58/116 (50%), Positives = 82/116 (70%)
Query: 5 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSD 64
K+ + HEW+ + T+GI++ AQ+ LGDVVY LPEVG +K+ FGA+ESVKA S+
Sbjct: 9 KFTEKHEWITTEEGIGTVGISNFAQEALGDVVYCSLPEVGTKLKKQEEFGALESVKAASE 68
Query: 65 VNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKF 120
+ SP+SG+V EVNE L+ +P LVN S YEDGW+IK+ + + EL +LM + Y K+
Sbjct: 69 LYSPLSGEVTEVNEALAENPGLVNKSCYEDGWLIKMTLSDPSELDELMSEEAYEKY 124
>pdb|3KLR|A Chain A, Bovine H-Protein At 0.88 Angstrom Resolution
Length = 125
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 57/116 (49%), Positives = 80/116 (68%)
Query: 5 KYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSD 64
K+ + HEWV + T+GI++ AQ+ LGDVVY LPEVG + + FGA+ESVKA S+
Sbjct: 4 KFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASE 63
Query: 65 VNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKF 120
+ SP+SG+V E+N+ L+ +P LVN S YEDGW+IK+ N EL +LM + Y K+
Sbjct: 64 LYSPLSGEVTEINKALAENPGLVNKSCYEDGWLIKMTFSNPSELDELMSEEAYEKY 119
>pdb|1ONL|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 H-Protein Of
The Glycine Cleavage System
pdb|1ONL|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 H-Protein Of
The Glycine Cleavage System
pdb|1ONL|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 H-Protein Of
The Glycine Cleavage System
Length = 128
Score = 126 bits (317), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 84/123 (68%)
Query: 2 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKA 61
KD Y +HEW +G++ +GITD+AQD LGDVVYVELPEVG V++ + VESVK
Sbjct: 5 KDRFYTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKT 64
Query: 62 TSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFC 121
SD+ +PV+G++VEVN L +P LVN PY +GWI +++ + G+L +L+DA Y +
Sbjct: 65 ASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLKPRDMGDLDELLDAGGYQEVL 124
Query: 122 EEE 124
E E
Sbjct: 125 ESE 127
>pdb|3A7A|B Chain B, Crystal Structure Of E. Coli Lipoate-protein Ligase A In
Complex With Octyl-amp And Apoh-protein
pdb|3A7A|D Chain D, Crystal Structure Of E. Coli Lipoate-protein Ligase A In
Complex With Octyl-amp And Apoh-protein
pdb|3A7L|A Chain A, Crystal Structure Of E. Coli Apoh-Protein
Length = 128
Score = 125 bits (313), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 3 DLKYADSHEWVKVDGNSA-TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKA 61
+LKY+ HEW++ + + T+GIT+HAQ+ LGD+V+V+LPEVG TV ESVKA
Sbjct: 6 ELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKA 65
Query: 62 TSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFC 121
SD+ +PVSG++V VN+ LS SP LVNS PY GWI K++ + EL+ L+DA Y
Sbjct: 66 ASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALL 125
Query: 122 EEE 124
E+E
Sbjct: 126 EDE 128
>pdb|3A8I|E Chain E, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8I|F Chain F, Crystal Structure Of Et-Ehred-5-Ch3-Thf Complex
pdb|3A8J|E Chain E, Crystal Structure Of Et-Ehred Complex
pdb|3A8J|F Chain F, Crystal Structure Of Et-Ehred Complex
pdb|3A8K|E Chain E, Crystal Structure Of Etd97n-Ehred Complex
pdb|3A8K|F Chain F, Crystal Structure Of Etd97n-Ehred Complex
pdb|3AB9|A Chain A, Crystal Structure Of Lipoylated E. Coli H-Protein (Reduced
Form)
Length = 129
Score = 122 bits (307), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Query: 3 DLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKA 61
+LKY+ HEW++ + + + T+GIT+HAQ+ LGD+V+V+LPEVG TV ESV A
Sbjct: 7 ELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVXA 66
Query: 62 TSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFC 121
SD+ +PVSG++V VN+ LS SP LVNS PY GWI K++ + EL+ L+DA Y
Sbjct: 67 ASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALL 126
Query: 122 EEE 124
E+E
Sbjct: 127 EDE 129
>pdb|3HGB|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Mycobacterium Tuberculosis
Length = 155
Score = 115 bits (287), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 2 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60
DL Y HEW++ G+ + +GITD+AQ LGDVV+V+LP +G V +FG VES K
Sbjct: 27 SDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTK 86
Query: 61 ATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNA------GELKKLMDA 114
+ SD+ +P+SGKV EVN +L +P LVNS PY GW++ +++D++ L L+DA
Sbjct: 87 SVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDA 146
Query: 115 DQYTKFCEE 123
+ Y E
Sbjct: 147 EAYRGTLTE 155
>pdb|3IFT|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Mycobacterium Tuberculosis, Using X-Rays From The
Compact L Source
Length = 142
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 2 KDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60
DL Y HEW++ G+ + +GITD+AQ LGDVV+V+LP +G V +FG VES K
Sbjct: 14 SDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTK 73
Query: 61 ATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNA------GELKKLMDA 114
+ SD+ +P+SGKV EVN +L +P LVNS PY GW++ +++D++ L L+DA
Sbjct: 74 SVSDLYAPISGKVSEVNSDLDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDA 133
Query: 115 DQYTKFCEE 123
+ Y E
Sbjct: 134 EAYRGTLTE 142
>pdb|3MXU|A Chain A, Crystal Structure Of Glycine Cleavage System Protein H
From Henselae
Length = 143
Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 76/116 (65%)
Query: 6 YADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDV 65
+ HEW+ V+G T+GITD+AQ+ LGD+V+++LP+ G + + + VESVKA SDV
Sbjct: 27 FTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDV 86
Query: 66 NSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFC 121
+P+ G+VVE+N L+ SP LVN +GW+ K+ + + +L++L+D Y +
Sbjct: 87 YAPLDGEVVEINAALAESPELVNQKAETEGWLWKMTVQDETQLERLLDEAAYKELI 142
>pdb|3TZU|A Chain A, Crystal Structure Of A Glycine Cleavage System H Protein
(Gcvh) From Mycobacterium Marinum
pdb|3TZU|B Chain B, Crystal Structure Of A Glycine Cleavage System H Protein
(Gcvh) From Mycobacterium Marinum
pdb|3TZU|C Chain C, Crystal Structure Of A Glycine Cleavage System H Protein
(Gcvh) From Mycobacterium Marinum
pdb|3TZU|D Chain D, Crystal Structure Of A Glycine Cleavage System H Protein
(Gcvh) From Mycobacterium Marinum
Length = 137
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 68/121 (56%), Gaps = 9/121 (7%)
Query: 3 DLKYADSHEWVKVDGNSAT------IGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAV 56
D Y HEW+ + +AT +GIT A + LGD+V+V+LPEVG TV S G V
Sbjct: 13 DRSYTADHEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQLPEVGETVSAGESCGEV 72
Query: 57 ESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQ 116
ES K SD+ +P SG++VEVN PA + + PY GW+ V+ GE L+ A +
Sbjct: 73 ESTKTVSDLIAPASGQIVEVNTAAVDDPATIATDPYGAGWLYSVQPTAVGE---LLTASE 129
Query: 117 Y 117
Y
Sbjct: 130 Y 130
>pdb|3KYH|A Chain A, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|B Chain B, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 310
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 24 ITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVV 74
+T QD + +Y PE+ ++ + FG + K VN PVS + V
Sbjct: 42 LTKSVQDWVYATIYSIAPELRSFIELEMKFGVIIDAKGPDRVNPPVSSQCV 92
>pdb|1D8H|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8H|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8H|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8I|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion.
pdb|1D8I|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion.
pdb|1D8I|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion
Length = 311
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 24 ITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVV 74
+T QD + +Y PE+ ++ + FG + K VN PVS + V
Sbjct: 43 LTKSVQDWVYATIYSIAPELRSFIELEMKFGVIIDAKGPDRVNPPVSSQCV 93
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 38 VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWI 97
+ PE+ +TV +D+ F +E+++ + + V + LV +S +
Sbjct: 371 ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLV 430
Query: 98 IKVEMDNAGELKKL 111
++ E D EL+++
Sbjct: 431 LRFEADTEEELERI 444
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 38 VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWI 97
+ PE+ +TV +D+ F +E+++ + + V + LV +S +
Sbjct: 371 ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLV 430
Query: 98 IKVEMDNAGELKKL 111
++ E D EL+++
Sbjct: 431 LRFEADTEEELERI 444
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 38 VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWI 97
+ PE+ +TV +D+ F +E+++ + + V + LV +S +
Sbjct: 371 ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLV 430
Query: 98 IKVEMDNAGELKKL 111
++ E D EL+++
Sbjct: 431 LRFEADTEEELERI 444
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 44 GVTVKQDASFGAVESVKATSDVNSPVSGKVVEV 76
G V +D V++ KA ++ SPV GKV+E+
Sbjct: 27 GDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEI 59
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 38 VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWI 97
+ PE+ +TV +D+ F +E+++ + + V + LV +S +
Sbjct: 371 ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLV 430
Query: 98 IKVEMDNAGELKKL 111
++ E D EL+++
Sbjct: 431 LRFEADTEEELERI 444
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 38 VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWI 97
+ PE+ +TV +D+ F +E+++ + + V + LV +S +
Sbjct: 371 ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLV 430
Query: 98 IKVEMDNAGELKKL 111
++ E D EL+++
Sbjct: 431 LRFEADTEEELERI 444
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 38 VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWI 97
+ PE+ +TV +D+ F +E+++ + + V + LV +S +
Sbjct: 370 ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLV 429
Query: 98 IKVEMDNAGELKKL 111
++ E D EL+++
Sbjct: 430 LRFEADTEEELERI 443
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 38 VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWI 97
+ PE+ +TV +D+ F +E+++ + + V + LV +S +
Sbjct: 370 ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLV 429
Query: 98 IKVEMDNAGELKKL 111
++ E D EL+++
Sbjct: 430 LRFEADTEEELERI 443
>pdb|1K35|A Chain A, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
From P.aeruginosa
Length = 463
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/74 (20%), Positives = 34/74 (45%)
Query: 38 VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWI 97
+ PE+ +TV +D+ F +E+++ + + V + LV +S +
Sbjct: 371 ISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLV 430
Query: 98 IKVEMDNAGELKKL 111
++ E D EL+++
Sbjct: 431 LRFEADTEEELERI 444
>pdb|1YGM|A Chain A, Nmr Structure Of Mistic
Length = 118
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 50 DASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELK 109
+ S G +E++K TS+ +S + +NE L + L N S D +I+++ D A +K
Sbjct: 22 EKSTGVMEAMKVTSEEKEQLSTAIDRMNEGLDAFIQLYNESEI-DEPLIQLDDDTAELMK 80
Query: 110 KLMD 113
+ D
Sbjct: 81 QARD 84
>pdb|1YNX|A Chain A, Solution Structure Of Dna Binding Domain A (Dbd-A) Of
S.Cerevisiae Replication Protein A (Rpa)
Length = 114
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 85 ALVNSSPYEDGWIIKVEMDNAGELK 109
A+ SPY++ W IK + GE+K
Sbjct: 6 AIEQLSPYQNVWTIKARVSYKGEIK 30
>pdb|1S2B|A Chain A, Structure Of Scp-B The First Member Of The Eqolisin Family
Of Peptidases To Have Its Structure Determined
pdb|1S2K|A Chain A, Structure Of Scp-B A Member Of The Eqolisin Family Of
Peptidases In A Complex With A Tripeptide Ala-Ile-His
pdb|2IFR|A Chain A, Crystal Structure Of Scytalido-Glutamic Peptidase With A
Peptide Based Transition State Analog
pdb|2IFW|A Chain A, Crystal Structure Of Scytalido-glutamic Peptidase With A
Transition State Analog Inhibitor
pdb|2IFW|B Chain B, Crystal Structure Of Scytalido-glutamic Peptidase With A
Transition State Analog Inhibitor
Length = 206
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 12 WVKVDGNSATIGITDHAQDHLGDVVYVE----LPEV-----GVTVKQDASFGAVESVKAT 62
WV +DG++ I D GD Y PEV G+T+ + S SV AT
Sbjct: 39 WVGIDGDTCQTAILQTGFDWYGDGTYDAWYEWYPEVSDDFSGITISEGDSIQM--SVTAT 96
Query: 63 SDVNSPVSGKVVEVNEELSSS 83
SD + + + + +++S S
Sbjct: 97 SDTSGSATLENLTTGQKVSKS 117
>pdb|3ORH|A Chain A, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|B Chain B, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|C Chain C, Human Guanidinoacetate N-Methyltransferase With Sah
pdb|3ORH|D Chain D, Human Guanidinoacetate N-Methyltransferase With Sah
Length = 236
Score = 25.4 bits (54), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 59 VKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMD 113
+ A + S G+V+EV ++ + + V +P ++ WII+ N G ++L D
Sbjct: 50 MHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIEC---NDGVFQRLRD 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.307 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,974,236
Number of Sequences: 62578
Number of extensions: 150308
Number of successful extensions: 354
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 39
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)