Query 044104
Match_columns 128
No_of_seqs 105 out of 1082
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044104.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044104hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0509 GcvH Glycine cleavage 100.0 9.1E-48 2E-52 273.4 13.3 123 1-123 6-130 (131)
2 TIGR00527 gcvH glycine cleavag 100.0 8.4E-47 1.8E-51 269.2 12.8 123 1-123 3-126 (127)
3 PRK01202 glycine cleavage syst 100.0 2.8E-46 6.2E-51 266.4 14.1 122 1-122 5-126 (127)
4 PRK13380 glycine cleavage syst 100.0 9E-46 1.9E-50 268.8 14.0 125 1-125 10-136 (144)
5 PF01597 GCV_H: Glycine cleava 100.0 2.2E-44 4.7E-49 255.1 12.5 121 4-124 1-122 (122)
6 KOG3373 Glycine cleavage syste 100.0 5.8E-42 1.3E-46 249.9 11.4 125 1-125 48-172 (172)
7 TIGR03077 not_gcvH glycine cle 100.0 7E-41 1.5E-45 233.4 12.4 107 5-111 1-108 (110)
8 PRK00624 glycine cleavage syst 100.0 7.2E-41 1.6E-45 234.6 12.2 108 4-111 2-110 (114)
9 cd06848 GCS_H Glycine cleavage 100.0 1.7E-34 3.7E-39 196.3 10.7 95 6-100 1-96 (96)
10 cd06663 Biotinyl_lipoyl_domain 99.4 3.9E-13 8.5E-18 86.0 6.4 72 21-100 1-73 (73)
11 COG0511 AccB Biotin carboxyl c 98.8 1.1E-08 2.4E-13 74.0 6.4 71 23-101 69-139 (140)
12 KOG3266 Predicted glycine clea 98.7 1.2E-07 2.6E-12 69.5 9.6 114 9-122 34-169 (172)
13 PRK08225 acetyl-CoA carboxylas 98.7 3.6E-08 7.8E-13 62.7 5.1 56 24-80 1-56 (70)
14 PRK05889 putative acetyl-CoA c 98.7 5.2E-08 1.1E-12 62.3 5.2 52 28-80 6-57 (71)
15 PRK06748 hypothetical protein; 98.4 5.8E-07 1.3E-11 59.8 5.3 52 29-81 9-61 (83)
16 PF00364 Biotin_lipoyl: Biotin 98.4 6.9E-07 1.5E-11 57.7 4.8 40 40-79 21-60 (74)
17 PRK06549 acetyl-CoA carboxylas 98.3 2.1E-06 4.6E-11 61.5 5.5 54 27-81 64-117 (130)
18 PRK07051 hypothetical protein; 98.2 2.1E-06 4.6E-11 56.2 4.8 51 28-79 7-64 (80)
19 cd06850 biotinyl_domain The bi 98.2 3.7E-06 8E-11 51.7 5.4 49 30-79 5-53 (67)
20 TIGR00531 BCCP acetyl-CoA carb 98.2 2.9E-06 6.3E-11 62.4 5.0 51 29-79 85-141 (156)
21 PRK06302 acetyl-CoA carboxylas 98.1 5.9E-06 1.3E-10 60.7 5.1 39 40-78 101-139 (155)
22 PRK14875 acetoin dehydrogenase 98.1 6.2E-06 1.3E-10 65.6 5.7 63 33-103 17-79 (371)
23 PRK05641 putative acetyl-CoA c 98.1 7.6E-06 1.7E-10 60.1 5.1 54 27-81 87-140 (153)
24 PLN02983 biotin carboxyl carri 98.0 1E-05 2.2E-10 64.1 5.2 50 30-79 203-258 (274)
25 PTZ00144 dihydrolipoamide succ 97.9 2.2E-05 4.8E-10 65.9 5.3 48 33-81 59-106 (418)
26 PLN02226 2-oxoglutarate dehydr 97.8 2.4E-05 5.3E-10 66.4 5.1 71 10-81 78-153 (463)
27 PRK14042 pyruvate carboxylase 97.8 3.6E-05 7.8E-10 67.2 5.8 51 29-80 530-580 (596)
28 TIGR01108 oadA oxaloacetate de 97.8 4.3E-05 9.3E-10 66.5 5.6 50 29-79 522-571 (582)
29 PRK14040 oxaloacetate decarbox 97.8 4.1E-05 8.9E-10 66.8 5.5 50 31-81 531-580 (593)
30 COG0508 AceF Pyruvate/2-oxoglu 97.7 4.2E-05 9.1E-10 63.9 4.9 49 33-82 17-65 (404)
31 COG4770 Acetyl/propionyl-CoA c 97.6 8.9E-05 1.9E-09 64.2 5.6 74 8-82 545-632 (645)
32 TIGR02712 urea_carbox urea car 97.6 6.7E-05 1.5E-09 70.0 5.0 56 24-80 1132-1187(1201)
33 TIGR01235 pyruv_carbox pyruvat 97.6 9.3E-05 2E-09 68.8 5.8 53 28-81 1078-1130(1143)
34 PRK05704 dihydrolipoamide succ 97.6 0.00011 2.4E-09 61.4 5.3 48 33-81 17-64 (407)
35 PRK09282 pyruvate carboxylase 97.6 0.00011 2.5E-09 64.0 5.3 51 30-81 528-578 (592)
36 COG1038 PycA Pyruvate carboxyl 97.6 7.5E-05 1.6E-09 67.0 3.9 49 29-78 1084-1132(1149)
37 PRK12999 pyruvate carboxylase; 97.6 0.00012 2.6E-09 68.1 5.5 51 29-80 1081-1131(1146)
38 TIGR01347 sucB 2-oxoglutarate 97.5 0.00022 4.9E-09 59.6 5.4 48 33-81 15-62 (403)
39 PRK11854 aceF pyruvate dehydro 97.3 0.00037 8.1E-09 61.2 4.8 47 33-80 219-265 (633)
40 TIGR02927 SucB_Actino 2-oxoglu 97.3 0.00046 1E-08 60.2 5.2 48 33-81 150-197 (590)
41 PRK11854 aceF pyruvate dehydro 97.2 0.00057 1.2E-08 60.0 5.7 45 33-78 15-59 (633)
42 cd06849 lipoyl_domain Lipoyl d 97.2 0.0012 2.7E-08 39.7 5.5 47 33-80 15-61 (74)
43 TIGR01348 PDHac_trf_long pyruv 97.2 0.0005 1.1E-08 59.5 4.7 48 33-81 130-177 (546)
44 PF13375 RnfC_N: RnfC Barrel s 97.2 0.00056 1.2E-08 47.0 3.8 63 18-86 28-90 (101)
45 PF09891 DUF2118: Uncharacteri 97.1 0.0014 3E-08 48.1 5.9 46 33-79 89-135 (150)
46 PRK11855 dihydrolipoamide acet 97.1 0.00086 1.9E-08 57.9 5.1 47 33-80 133-179 (547)
47 PRK11855 dihydrolipoamide acet 97.0 0.0013 2.9E-08 56.7 5.7 47 33-80 16-62 (547)
48 PLN02528 2-oxoisovalerate dehy 97.0 0.0013 2.8E-08 55.3 5.1 45 33-78 13-57 (416)
49 TIGR01348 PDHac_trf_long pyruv 96.9 0.0018 3.9E-08 56.0 5.5 47 33-80 14-60 (546)
50 KOG0559 Dihydrolipoamide succi 96.8 0.00069 1.5E-08 56.1 2.3 85 11-103 63-149 (457)
51 TIGR01349 PDHac_trf_mito pyruv 96.8 0.0019 4.1E-08 54.5 4.7 48 34-82 15-62 (435)
52 PRK11856 branched-chain alpha- 96.8 0.0029 6.2E-08 52.7 5.6 49 33-82 17-65 (411)
53 PLN02744 dihydrolipoyllysine-r 96.6 0.0033 7.2E-08 54.5 4.9 48 33-81 127-174 (539)
54 PRK11892 pyruvate dehydrogenas 96.3 0.0075 1.6E-07 51.4 5.1 48 33-81 17-64 (464)
55 TIGR02927 SucB_Actino 2-oxoglu 96.3 0.0071 1.5E-07 52.9 5.0 46 34-80 18-63 (590)
56 PF05896 NQRA: Na(+)-transloca 96.1 0.0067 1.5E-07 48.1 3.9 39 41-81 45-84 (257)
57 KOG0369 Pyruvate carboxylase [ 96.1 0.0073 1.6E-07 54.0 4.3 48 29-77 1111-1158(1176)
58 PRK05352 Na(+)-translocating N 96.0 0.0078 1.7E-07 51.1 4.0 37 40-77 45-81 (448)
59 PRK09783 copper/silver efflux 96.0 0.015 3.2E-07 48.5 5.4 54 29-82 128-229 (409)
60 PRK05035 electron transport co 95.8 0.012 2.6E-07 52.5 4.2 40 40-81 52-92 (695)
61 TIGR01945 rnfC electron transp 95.6 0.013 2.8E-07 49.3 3.6 58 18-81 29-86 (435)
62 TIGR01936 nqrA NADH:ubiquinone 95.5 0.013 2.8E-07 49.8 3.4 38 40-78 44-81 (447)
63 KOG0557 Dihydrolipoamide acety 95.4 0.022 4.7E-07 48.5 4.3 57 19-76 38-95 (470)
64 KOG0238 3-Methylcrotonyl-CoA c 95.0 0.02 4.3E-07 49.7 3.0 54 29-83 606-659 (670)
65 cd06253 M14_ASTE_ASPA_like_3 A 95.0 0.095 2.1E-06 42.1 6.7 42 40-81 243-287 (298)
66 cd06251 M14_ASTE_ASPA_like_1 A 94.7 0.095 2.1E-06 41.7 5.9 42 40-81 233-276 (287)
67 cd06252 M14_ASTE_ASPA_like_2 A 94.4 0.18 3.9E-06 40.7 7.0 53 40-101 258-314 (316)
68 TIGR02994 ectoine_eutE ectoine 94.4 0.16 3.5E-06 41.4 6.7 40 40-79 269-312 (325)
69 COG4656 RnfC Predicted NADH:ub 94.3 0.033 7.1E-07 48.1 2.7 56 29-87 38-93 (529)
70 PF13533 Biotin_lipoyl_2: Biot 94.2 0.049 1.1E-06 32.4 2.6 30 30-60 8-37 (50)
71 TIGR03309 matur_yqeB selenium- 94.1 0.11 2.3E-06 41.4 5.0 34 40-77 178-211 (256)
72 TIGR01730 RND_mfp RND family e 94.1 0.067 1.5E-06 41.9 3.9 30 29-59 31-60 (322)
73 COG3608 Predicted deacylase [G 94.0 0.12 2.6E-06 42.5 5.1 54 40-103 270-326 (331)
74 cd06255 M14_ASTE_ASPA_like_5 A 93.7 0.16 3.5E-06 40.5 5.4 38 40-77 245-284 (293)
75 PRK09578 periplasmic multidrug 93.5 0.11 2.4E-06 42.6 4.3 32 27-59 66-97 (385)
76 COG4072 Uncharacterized protei 93.5 0.11 2.4E-06 37.8 3.7 44 41-84 107-151 (161)
77 PRK11578 macrolide transporter 93.2 0.15 3.3E-06 41.5 4.6 30 29-59 66-95 (370)
78 PRK09859 multidrug efflux syst 93.2 0.14 3E-06 42.1 4.3 34 25-59 62-95 (385)
79 cd06254 M14_ASTE_ASPA_like_4 A 92.9 0.31 6.8E-06 38.7 5.8 40 40-79 237-278 (288)
80 COG1726 NqrA Na+-transporting 92.8 0.12 2.7E-06 43.1 3.5 36 42-79 46-82 (447)
81 PRK11556 multidrug efflux syst 92.7 0.16 3.4E-06 42.5 4.1 31 27-58 90-120 (415)
82 cd06250 M14_PaAOTO_like An unc 92.4 0.5 1.1E-05 39.0 6.6 42 40-81 303-348 (359)
83 TIGR00830 PTBA PTS system, glu 88.4 1.7 3.6E-05 30.8 5.5 51 6-59 50-104 (121)
84 KOG0368 Acetyl-CoA carboxylase 88.3 0.52 1.1E-05 45.7 3.6 45 32-77 693-737 (2196)
85 cd00210 PTS_IIA_glc PTS_IIA, P 87.2 2 4.3E-05 30.5 5.3 51 6-59 50-104 (124)
86 PF07831 PYNP_C: Pyrimidine nu 85.1 1.2 2.6E-05 28.7 3.1 21 40-60 37-57 (75)
87 PRK09439 PTS system glucose-sp 84.6 3.5 7.5E-05 30.8 5.8 52 6-60 72-127 (169)
88 PRK08225 acetyl-CoA carboxylas 84.6 1.1 2.4E-05 27.9 2.6 29 28-57 42-70 (70)
89 PRK10476 multidrug resistance 80.0 2.2 4.7E-05 34.4 3.5 40 19-59 43-82 (346)
90 KOG0558 Dihydrolipoamide trans 78.7 0.97 2.1E-05 37.8 1.0 40 41-80 86-125 (474)
91 PF04952 AstE_AspA: Succinylgl 78.4 5.6 0.00012 31.1 5.2 42 40-81 234-279 (292)
92 PF00358 PTS_EIIA_1: phosphoen 78.2 11 0.00024 26.9 6.3 54 6-62 54-111 (132)
93 PRK12784 hypothetical protein; 78.1 7.7 0.00017 25.6 4.9 33 19-59 45-77 (84)
94 TIGR00998 8a0101 efflux pump m 78.0 2.1 4.5E-05 34.0 2.7 41 18-59 36-76 (334)
95 PRK15136 multidrug efflux syst 76.5 2.8 6.1E-05 34.7 3.2 43 16-59 53-95 (390)
96 TIGR00998 8a0101 efflux pump m 76.4 21 0.00046 28.2 8.1 51 30-81 210-286 (334)
97 PRK12784 hypothetical protein; 75.7 6.6 0.00014 25.9 4.1 54 29-83 10-64 (84)
98 TIGR02971 heterocyst_DevB ABC 75.3 2.9 6.3E-05 33.2 2.9 26 33-59 25-50 (327)
99 COG2190 NagE Phosphotransferas 74.8 5.9 0.00013 29.3 4.1 66 6-74 57-126 (156)
100 PF00358 PTS_EIIA_1: phosphoen 74.4 3.9 8.4E-05 29.3 3.0 15 64-78 41-55 (132)
101 PRK07051 hypothetical protein; 72.8 5.2 0.00011 25.7 3.1 30 27-57 50-79 (80)
102 PRK10559 p-hydroxybenzoic acid 71.7 3.6 7.9E-05 33.0 2.6 32 27-59 50-81 (310)
103 PF00529 HlyD: HlyD family sec 71.5 2.9 6.2E-05 32.4 2.0 30 32-62 9-38 (305)
104 TIGR01995 PTS-II-ABC-beta PTS 69.1 25 0.00055 31.1 7.5 53 6-61 514-570 (610)
105 PRK15030 multidrug efflux syst 69.0 4.3 9.3E-05 33.5 2.6 31 28-59 69-99 (397)
106 PF13437 HlyD_3: HlyD family s 68.9 4.2 9E-05 26.7 2.1 17 64-80 1-17 (105)
107 PRK02259 aspartoacylase; Provi 68.5 6.2 0.00013 31.4 3.3 59 24-83 213-275 (288)
108 PF13437 HlyD_3: HlyD family s 67.5 7.6 0.00016 25.5 3.1 26 33-59 8-33 (105)
109 PRK09824 PTS system beta-gluco 67.2 17 0.00036 32.5 6.0 52 6-60 530-585 (627)
110 COG0511 AccB Biotin carboxyl c 65.9 5.8 0.00012 28.4 2.4 31 26-57 109-139 (140)
111 PRK15136 multidrug efflux syst 65.8 38 0.00083 28.0 7.6 65 32-97 223-313 (390)
112 PRK10476 multidrug resistance 65.5 38 0.00083 27.2 7.4 66 31-97 215-310 (346)
113 COG0157 NadC Nicotinate-nucleo 64.6 13 0.00028 30.1 4.4 49 11-59 38-88 (280)
114 PF00364 Biotin_lipoyl: Biotin 63.8 8.4 0.00018 24.2 2.7 27 29-56 48-74 (74)
115 PRK03598 putative efflux pump 63.0 7.5 0.00016 31.0 2.9 36 23-59 42-77 (331)
116 PRK06748 hypothetical protein; 62.0 12 0.00026 24.7 3.2 33 26-59 44-76 (83)
117 PF12700 HlyD_2: HlyD family s 62.0 6.7 0.00015 30.6 2.4 31 27-59 24-54 (328)
118 TIGR01843 type_I_hlyD type I s 60.1 7.4 0.00016 31.6 2.4 33 29-62 48-80 (423)
119 PF02749 QRPTase_N: Quinolinat 59.8 28 0.00061 22.6 4.7 41 18-59 27-69 (88)
120 TIGR03794 NHPM_micro_HlyD NHPM 59.4 8.8 0.00019 31.9 2.7 38 23-61 57-94 (421)
121 COG1566 EmrA Multidrug resista 57.3 13 0.00029 30.8 3.4 40 19-59 48-87 (352)
122 PRK09907 toxin MazF; Provision 56.2 19 0.00042 24.6 3.6 28 32-59 9-37 (111)
123 PRK02597 rpoC2 DNA-directed RN 54.3 20 0.00043 34.8 4.4 66 11-79 375-452 (1331)
124 PRK10255 PTS system N-acetyl g 51.3 41 0.00088 30.3 5.6 52 6-60 550-605 (648)
125 PRK09439 PTS system glucose-sp 50.0 20 0.00044 26.7 3.1 15 63-77 58-72 (169)
126 TIGR00531 BCCP acetyl-CoA carb 48.4 18 0.0004 26.3 2.6 31 26-57 126-156 (156)
127 TIGR01000 bacteriocin_acc bact 46.6 23 0.0005 29.8 3.3 34 27-61 61-95 (457)
128 PRK06302 acetyl-CoA carboxylas 46.0 20 0.00042 26.1 2.5 31 26-57 125-155 (155)
129 PRK09812 toxin ChpB; Provision 45.6 28 0.00061 24.0 3.1 28 32-59 9-38 (116)
130 PF02452 PemK: PemK-like prote 45.3 12 0.00027 24.4 1.2 27 33-59 3-29 (110)
131 TIGR02971 heterocyst_DevB ABC 44.2 19 0.00041 28.6 2.3 19 63-81 205-223 (327)
132 PF02666 PS_Dcarbxylase: Phosp 44.1 41 0.00088 25.2 4.0 49 21-70 133-181 (202)
133 TIGR00999 8a0102 Membrane Fusi 43.6 20 0.00042 27.2 2.2 18 64-81 90-107 (265)
134 PRK10559 p-hydroxybenzoic acid 42.9 20 0.00043 28.7 2.2 21 62-82 154-174 (310)
135 PRK06549 acetyl-CoA carboxylas 41.3 33 0.00071 24.4 2.9 26 30-56 104-129 (130)
136 COG0845 AcrA Membrane-fusion p 41.1 26 0.00057 26.9 2.7 29 29-58 71-99 (372)
137 cd01134 V_A-ATPase_A V/A-type 40.9 52 0.0011 27.6 4.5 38 40-77 54-94 (369)
138 PRK00723 phosphatidylserine de 40.2 95 0.0021 25.0 5.8 30 47-76 150-179 (297)
139 TIGR00164 PS_decarb_rel phosph 40.0 42 0.0009 25.1 3.5 30 40-70 135-164 (189)
140 COG2232 Predicted ATP-dependen 38.2 25 0.00055 29.4 2.2 35 18-59 320-354 (389)
141 PF01551 Peptidase_M23: Peptid 37.8 33 0.00072 22.1 2.4 20 41-60 57-76 (96)
142 cd06910 M14_ASTE_ASPA_like_7 A 37.7 42 0.00091 26.4 3.3 32 41-76 226-258 (272)
143 TIGR01843 type_I_hlyD type I s 37.7 43 0.00093 27.1 3.5 27 32-58 279-305 (423)
144 TIGR00078 nadC nicotinate-nucl 37.7 54 0.0012 25.9 4.0 40 19-59 37-78 (265)
145 PRK15030 multidrug efflux syst 36.9 26 0.00056 28.9 2.1 21 62-82 173-193 (397)
146 KOG1775 U6 snRNA-associated Sm 35.9 49 0.0011 21.7 2.8 44 9-52 18-65 (84)
147 PRK03140 phosphatidylserine de 35.9 50 0.0011 26.0 3.5 55 11-69 180-234 (259)
148 PRK03598 putative efflux pump 35.4 25 0.00055 28.0 1.8 20 62-81 203-222 (331)
149 TIGR00999 8a0102 Membrane Fusi 35.0 24 0.00052 26.7 1.5 15 44-58 1-15 (265)
150 PRK07428 nicotinate-nucleotide 34.5 81 0.0017 25.4 4.5 40 20-59 54-96 (288)
151 PRK06096 molybdenum transport 34.3 67 0.0014 25.9 4.0 30 29-59 56-85 (284)
152 PRK08072 nicotinate-nucleotide 34.3 75 0.0016 25.4 4.3 40 20-59 46-88 (277)
153 PRK05848 nicotinate-nucleotide 34.3 70 0.0015 25.5 4.1 39 20-59 42-82 (273)
154 PRK05641 putative acetyl-CoA c 34.2 51 0.0011 24.1 3.1 27 29-56 126-152 (153)
155 PRK06106 nicotinate-nucleotide 33.8 1.4E+02 0.003 24.0 5.7 41 19-59 51-94 (281)
156 TIGR01334 modD putative molybd 33.4 71 0.0015 25.6 4.0 33 26-59 52-84 (277)
157 PRK08385 nicotinate-nucleotide 33.4 68 0.0015 25.7 3.9 30 29-59 53-82 (278)
158 PLN02983 biotin carboxyl carri 33.3 44 0.00096 26.9 2.8 28 29-57 246-273 (274)
159 TIGR02644 Y_phosphoryl pyrimid 33.1 37 0.0008 28.8 2.4 19 41-59 380-398 (405)
160 PRK09016 quinolinate phosphori 32.8 90 0.002 25.3 4.5 41 19-59 66-109 (296)
161 PRK05742 nicotinate-nucleotide 32.6 86 0.0019 25.1 4.4 40 20-59 48-90 (277)
162 PRK05305 phosphatidylserine de 32.5 88 0.0019 23.6 4.3 29 41-70 156-184 (206)
163 KOG3748 Uncharacterized conser 32.4 1.2E+02 0.0026 25.1 5.1 72 29-102 304-401 (477)
164 PRK05820 deoA thymidine phosph 30.8 42 0.00092 28.7 2.5 19 41-59 387-405 (440)
165 cd01573 modD_like ModD; Quinol 30.5 90 0.002 24.7 4.2 39 19-59 39-80 (272)
166 PRK09783 copper/silver efflux 30.5 1.1E+02 0.0023 25.5 4.8 56 20-77 82-138 (409)
167 PRK04350 thymidine phosphoryla 29.5 45 0.00098 29.0 2.4 19 41-59 445-463 (490)
168 TIGR02643 T_phosphoryl thymidi 29.3 47 0.001 28.5 2.5 19 41-59 386-404 (437)
169 TIGR02876 spore_yqfD sporulati 29.3 1.3E+02 0.0029 25.0 5.1 49 8-56 153-224 (382)
170 TIGR02645 ARCH_P_rylase putati 29.1 46 0.001 29.0 2.4 19 41-59 453-471 (493)
171 TIGR03327 AMP_phos AMP phospho 28.6 48 0.001 29.0 2.4 19 41-59 454-472 (500)
172 PRK14875 acetoin dehydrogenase 28.4 68 0.0015 25.1 3.2 31 29-60 50-80 (371)
173 PF11776 DUF3315: Domain of un 28.2 55 0.0012 19.5 2.0 19 8-26 28-46 (52)
174 PF06898 YqfD: Putative stage 28.2 1.4E+02 0.0031 24.7 5.1 49 8-56 157-227 (385)
175 PRK14698 V-type ATP synthase s 28.0 91 0.002 29.6 4.3 37 41-77 124-163 (1017)
176 PRK06543 nicotinate-nucleotide 27.7 1.2E+02 0.0026 24.4 4.5 31 29-59 58-89 (281)
177 PF06462 Hyd_WA: Propeller; I 27.3 53 0.0012 17.4 1.7 19 9-27 1-21 (32)
178 cd01617 DCX Ubiquitin-like dom 26.9 30 0.00065 22.2 0.7 26 88-113 8-33 (80)
179 PLN02226 2-oxoglutarate dehydr 26.7 64 0.0014 27.8 2.9 30 29-59 139-168 (463)
180 PF06051 DUF928: Domain of Unk 26.7 2.1E+02 0.0046 21.3 5.4 49 32-104 72-123 (189)
181 PF05117 DUF695: Family of unk 26.6 1.4E+02 0.003 20.6 4.2 47 73-125 18-66 (136)
182 PRK06978 nicotinate-nucleotide 26.4 1.4E+02 0.0029 24.3 4.6 40 20-59 64-106 (294)
183 CHL00117 rpoC2 RNA polymerase 26.4 99 0.0022 30.4 4.3 38 41-78 408-453 (1364)
184 PRK06078 pyrimidine-nucleoside 26.1 54 0.0012 28.0 2.3 20 41-60 382-401 (434)
185 PF11498 Activator_LAG-3: Tran 25.6 23 0.0005 29.8 0.0 53 64-124 228-282 (468)
186 PLN02716 nicotinate-nucleotide 25.6 1.4E+02 0.0031 24.4 4.5 41 19-59 59-102 (308)
187 COG0688 Psd Phosphatidylserine 25.5 88 0.0019 24.5 3.3 44 33-76 90-138 (239)
188 PF09293 RNaseH_C: T4 RNase H, 24.9 67 0.0015 22.8 2.2 28 95-124 45-72 (122)
189 PF07290 DUF1449: Protein of u 24.5 92 0.002 23.8 3.1 31 29-59 159-190 (202)
190 PRK04081 hypothetical protein; 24.3 62 0.0013 25.0 2.1 20 108-127 82-101 (207)
191 cd01568 QPRTase_NadC Quinolina 23.9 1.5E+02 0.0032 23.4 4.3 40 19-59 39-81 (269)
192 PRK03934 phosphatidylserine de 23.3 1.1E+02 0.0024 24.1 3.5 31 46-76 112-142 (265)
193 cd01572 QPRTase Quinolinate ph 23.2 1.4E+02 0.003 23.6 4.0 57 23-80 43-111 (268)
194 TIGR03794 NHPM_micro_HlyD NHPM 23.0 1.1E+02 0.0025 25.2 3.6 25 32-57 261-285 (421)
195 TIGR01730 RND_mfp RND family e 22.8 1.1E+02 0.0024 23.6 3.3 28 32-60 142-169 (322)
196 PRK07896 nicotinate-nucleotide 22.3 1.5E+02 0.0032 24.0 4.0 41 19-59 55-100 (289)
197 PRK03140 phosphatidylserine de 21.9 1E+02 0.0023 24.2 3.1 30 47-76 123-152 (259)
198 cd01571 NAPRTase_B Nicotinate 21.8 1.1E+02 0.0024 24.5 3.3 39 20-59 37-76 (302)
199 TIGR02388 rpoC2_cyan DNA-direc 21.7 1.3E+02 0.0028 29.3 4.0 39 41-79 407-452 (1227)
200 PF07045 DUF1330: Protein of u 21.2 49 0.0011 20.1 0.8 54 62-120 11-64 (65)
201 PRK09282 pyruvate carboxylase 21.1 1.8E+02 0.0038 25.9 4.6 20 62-81 522-541 (592)
202 TIGR00163 PS_decarb phosphatid 20.9 1.2E+02 0.0026 23.5 3.2 22 55-76 89-110 (238)
No 1
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-48 Score=273.44 Aligned_cols=123 Identities=58% Similarity=0.963 Sum_probs=119.3
Q ss_pred CCCcccCCCceEEEEeC-CEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 1 IKDLKYADSHEWVKVDG-NSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~-~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
|++++|+.+|+||+.++ ++++||||++||+++|+|+||+||++|++|++|+++++|||.|++++++||++|+|+++|++
T Consensus 6 p~~l~Y~~~heWvr~e~d~~~tvGiT~~aq~~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~ 85 (131)
T COG0509 6 PDDLKYTAEHEWVRVEGDGTATVGITDYAQDQLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEA 85 (131)
T ss_pred cccceeccceEEEEecCCCEEEEeCCHHHHHhcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechh
Confidence 88999999999999997 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccCCCCCCCcEEEEEECCh-hhHhhcCCHHHHHHHHhh
Q 044104 80 LSSSPALVNSSPYEDGWIIKVEMDNA-GELKKLMDADQYTKFCEE 123 (128)
Q Consensus 80 l~~~P~lln~dpy~~gWl~~i~~~~~-~~~~~Ll~~~~Y~~~~~~ 123 (128)
|.++|+++|++||++|||++|+++|+ ++++.||++++|.++++.
T Consensus 86 l~~~PeliN~dPyg~gWi~klk~~d~~~~~~~L~~~~~y~~~~~~ 130 (131)
T COG0509 86 LVDSPELINSDPYGEGWIVKLKPADPSEELEALLDAEAYAELLKE 130 (131)
T ss_pred hhcChhhhccCCCCCceEEEEeeCChHHHHHhccCHHHHHHHhhc
Confidence 99999999999999999999999996 559999999999999875
No 2
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=100.00 E-value=8.4e-47 Score=269.18 Aligned_cols=123 Identities=57% Similarity=0.973 Sum_probs=120.1
Q ss_pred CCCcccCCCceEEEEeCC-EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 1 IKDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~~-~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
|++++||++|+|++.+++ .+|||||+|||+++|+|.||+||.+|++|++|++|++||++|++.+|+||++|+|+++|++
T Consensus 3 p~~~~y~~~H~Wv~~~~~g~~~vGiT~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~ 82 (127)
T TIGR00527 3 PADLRYSKEHEWVRVEGDGTATVGITEFAQDELGDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDA 82 (127)
T ss_pred CcCcEECCCcEEEEEcCCcEEEEeecHHHhhCCCCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHh
Confidence 899999999999999876 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhh
Q 044104 80 LSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 123 (128)
Q Consensus 80 l~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~ 123 (128)
|.++|++||++||++|||++|++.+++++++||++++|.++|++
T Consensus 83 l~~~P~lln~~py~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~ 126 (127)
T TIGR00527 83 LEDSPELVNEDPYGGGWLIKVKLSDESELEGLMDAEQYEATLED 126 (127)
T ss_pred hhhChHHHhCCCccCcEEEEEecCCHHHHHhcCCHHHHHHHhhc
Confidence 99999999999999999999999998899999999999999975
No 3
>PRK01202 glycine cleavage system protein H; Provisional
Probab=100.00 E-value=2.8e-46 Score=266.42 Aligned_cols=122 Identities=58% Similarity=1.007 Sum_probs=119.8
Q ss_pred CCCcccCCCceEEEEeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 1 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|++++||++|+||+.+++.++||||+++|+++|+|.||+||++|++|++|++|++||+.|++.+|+||++|+|+++|.+|
T Consensus 5 p~~~~ys~~H~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l 84 (127)
T PRK01202 5 PADLKYTKSHEWVRVEGDTATVGITDHAQEQLGDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEAL 84 (127)
T ss_pred CcCceECCCcEEEEEcCCEEEEeeCHHHHhhcCCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHh
Confidence 89999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHh
Q 044104 81 SSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCE 122 (128)
Q Consensus 81 ~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~ 122 (128)
.++|++||++||++|||++|++.+++++++||++++|.++|+
T Consensus 85 ~~~p~~ln~~p~~~gWl~~v~~~~~~~~~~L~~~~~Y~~~~~ 126 (127)
T PRK01202 85 EDSPELVNEDPYGEGWLFKIKPSDESELDDLLDAEAYEALIE 126 (127)
T ss_pred hhCcHhhcCCCCCCceEEEEEeCCHHHHHhCCCHHHHHHHhc
Confidence 999999999999999999999999889999999999999986
No 4
>PRK13380 glycine cleavage system protein H; Provisional
Probab=100.00 E-value=9e-46 Score=268.82 Aligned_cols=125 Identities=42% Similarity=0.742 Sum_probs=121.2
Q ss_pred CCCcccCC-CceEEEEeCC-EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEeh
Q 044104 1 IKDLKYAD-SHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 1 P~~~~y~~-~h~Wv~~~~~-~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~ 78 (128)
|++++||+ +|+|++.+++ .++||||+|||+++|+|++|++|++|++|++|++|++|||+|++.+|+||++|+|+++|.
T Consensus 10 p~~~~Y~~~~H~Wv~~~~~g~~~vGitd~aq~~lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~ 89 (144)
T PRK13380 10 PSELRYTIKNHEWLRLEGDGTVTVGITDYAQTMAGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNE 89 (144)
T ss_pred CccceECCCCeEEEEEcCCCEEEEecCHHHHHhcCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHH
Confidence 88999999 9999998865 899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhhhc
Q 044104 79 ELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 125 (128)
Q Consensus 79 ~l~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e~ 125 (128)
+|.++|++||++||++|||++|++++++++++||++++|.++++++-
T Consensus 90 ~l~~~P~lln~dpy~~gWl~~v~~~d~~~~~~Ll~~~~y~~~~~~~~ 136 (144)
T PRK13380 90 ALEDSPELVNEDPYGEGWFFRFKPANPEELKQLLDGDAADRLLKENI 136 (144)
T ss_pred hhhhChHHhcCCCCCCCeEEEEEECCHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998753
No 5
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=100.00 E-value=2.2e-44 Score=255.08 Aligned_cols=121 Identities=54% Similarity=0.945 Sum_probs=109.5
Q ss_pred cccCCCceEEEEeCC-EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhc
Q 044104 4 LKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 4 ~~y~~~h~Wv~~~~~-~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~ 82 (128)
|+|+++|+|++.+++ .++||||++||+.+|+|+++++|.+|+++++|++|++||+.|++.+|+||++|+|+++|++|.+
T Consensus 1 l~y~~~h~Wv~~~~~g~~~vGit~~a~~~lG~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~~ 80 (122)
T PF01597_consen 1 LYYTEDHLWVKPEGDGVVRVGITDFAQDELGDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELLD 80 (122)
T ss_dssp SEEETTSEEEEEETTTEEEEEE-HHHHHHH-SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHHT
T ss_pred CcCCCCcEEEEECCCCEEEEEECchHhhcCCceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcccccc
Confidence 689999999999875 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhhh
Q 044104 83 SPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 124 (128)
Q Consensus 83 ~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e 124 (128)
+|++||++||++|||++|++.+++++++||++++|.++|+++
T Consensus 81 ~P~lln~~p~~~gWl~~i~~~d~~~~~~Ll~~~eY~~~~~~~ 122 (122)
T PF01597_consen 81 NPELLNSDPYGDGWLIKIKPSDPEEFDELLSAEEYEKFLKEE 122 (122)
T ss_dssp -TTHHHHSTTTTTEEEEEEESCGGGGGGSBEHHHHHHHHHC-
T ss_pred ChHHhccCCCCCCeEEEEEeCCHHHHHhCCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999875
No 6
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-42 Score=249.90 Aligned_cols=125 Identities=61% Similarity=1.034 Sum_probs=122.3
Q ss_pred CCCcccCCCceEEEEeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 1 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.+++|++.|+||..++++.++|||+||++.||+++||+||++|+.|.+|+.|+.+||.|+..+|+||+||+|++||++|
T Consensus 48 ~~~~~yt~qHEWV~~~~~vgtvGIt~~A~~~LGdvv~veLPe~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l 127 (172)
T KOG3373|consen 48 LSGRKYTSQHEWVLVEGGVGTVGITDFAQEHLGDVVYVELPEVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL 127 (172)
T ss_pred cccccccceeeEEEecCCeeEechhhhhhhhcCceEEEEcCCCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhhhc
Q 044104 81 SSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 125 (128)
Q Consensus 81 ~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e~ 125 (128)
.++|.++|++||++|||++|+++++++++.||+.++|.+||++|+
T Consensus 128 ~EnPGlvN~Sp~e~GWl~k~kls~~~ele~Lm~~e~Y~kf~~eed 172 (172)
T KOG3373|consen 128 EENPGLVNESPEEDGWLIKMKLSSPEELESLMNEEQYAKFCEEED 172 (172)
T ss_pred ccCCCcccCCcccCceEEEEEeCCHHHHHHhcCHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999999875
No 7
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=100.00 E-value=7e-41 Score=233.43 Aligned_cols=107 Identities=34% Similarity=0.620 Sum_probs=103.6
Q ss_pred ccCCCceEEEE-eCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcC
Q 044104 5 KYADSHEWVKV-DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSS 83 (128)
Q Consensus 5 ~y~~~h~Wv~~-~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~ 83 (128)
||+++|+|++. +++.+|||||+|||+++|+|+|++||++|++|++|++|++||++|++.+|+||++|+|+++|.+|.++
T Consensus 1 yy~~~H~Wv~~~~~~~~~vGiT~~aq~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~ 80 (110)
T TIGR03077 1 WYSDYHVWILPIHSQVVRLGLTSRMQENLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD 80 (110)
T ss_pred CcCCCcEEEEEcCCCEEEEeeCHHHHHhcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence 69999999996 56799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCcEEEEEECChhhHhhc
Q 044104 84 PALVNSSPYEDGWIIKVEMDNAGELKKL 111 (128)
Q Consensus 84 P~lln~dpy~~gWl~~i~~~~~~~~~~L 111 (128)
|++||++||++|||++|+++++.++++|
T Consensus 81 P~lln~~py~~gWl~~v~~~~~~~~~~~ 108 (110)
T TIGR03077 81 TQPINHSPESEGWFVVVQLDEDFDGENL 108 (110)
T ss_pred hHhhcCCCCCCceEEEEEECCHHHhhcc
Confidence 9999999999999999999999888876
No 8
>PRK00624 glycine cleavage system protein H; Provisional
Probab=100.00 E-value=7.2e-41 Score=234.64 Aligned_cols=108 Identities=32% Similarity=0.612 Sum_probs=104.5
Q ss_pred cccCCCceEEEEe-CCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhc
Q 044104 4 LKYADSHEWVKVD-GNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 4 ~~y~~~h~Wv~~~-~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~ 82 (128)
++|+++|+|++.+ ++.+|||||++||+++|+|+|++||++|++|++|++|++||++|++.+|+||++|+|+++|++|.+
T Consensus 2 ~~y~~~H~Wv~~~~~~~~~vGiT~~a~~~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 81 (114)
T PRK00624 2 MWYSDYHVWIEPIHSRIVRLGLTSKMQENLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTALED 81 (114)
T ss_pred cccCCCcEEEEEcCCCEEEEeeCHHHHHhcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 7899999999974 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCcEEEEEECChhhHhhc
Q 044104 83 SPALVNSSPYEDGWIIKVEMDNAGELKKL 111 (128)
Q Consensus 83 ~P~lln~dpy~~gWl~~i~~~~~~~~~~L 111 (128)
+|++||++||++|||++|+++++.++++|
T Consensus 82 ~P~lln~dpy~~gWl~~v~~~~~~~~~~~ 110 (114)
T PRK00624 82 DIQPINNAPESEGWFVVVQLDEDFDSENL 110 (114)
T ss_pred ChHhhcCCCCCCceEEEEEECChhHhhcC
Confidence 99999999999999999999999888876
No 9
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=100.00 E-value=1.7e-34 Score=196.29 Aligned_cols=95 Identities=64% Similarity=1.093 Sum_probs=92.9
Q ss_pred cCCCceEEEEeCC-EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCC
Q 044104 6 YADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSP 84 (128)
Q Consensus 6 y~~~h~Wv~~~~~-~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P 84 (128)
|+++|+|++.+++ .++||||++|++++|+|.++++|.+|+.|++|+++++||++|++.+|+||++|+|+++|.++.++|
T Consensus 1 y~~~h~W~~~~~~~~~~lGlt~~~~~~lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~p 80 (96)
T cd06848 1 YTKDHEWVKVEGDGIATVGITDYAQDLLGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDNP 80 (96)
T ss_pred CCCCCEEEEECCCcEEEEeeCHHHHhhCCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcCh
Confidence 8999999999876 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCcEEEE
Q 044104 85 ALVNSSPYEDGWIIKV 100 (128)
Q Consensus 85 ~lln~dpy~~gWl~~i 100 (128)
+++|++||++|||++|
T Consensus 81 ~~ln~~p~~~gWl~~i 96 (96)
T cd06848 81 ELINSDPYGEGWLVKI 96 (96)
T ss_pred HHHhCCCCCCCeEEEC
Confidence 9999999999999985
No 10
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.43 E-value=3.9e-13 Score=86.01 Aligned_cols=72 Identities=42% Similarity=0.479 Sum_probs=62.1
Q ss_pred EEecChhhhhhcCCeeEE-EcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEE
Q 044104 21 TIGITDHAQDHLGDVVYV-ELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIK 99 (128)
Q Consensus 21 ~vGit~~a~~~lG~i~~v-~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~ 99 (128)
+||++++++ .++..... .+++.|+.+++|++++.+|++|+..+++||++|+|+++|.+..++ .+..+||++
T Consensus 1 ~~~~~~~~~-~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-------v~~g~~l~~ 72 (73)
T cd06663 1 TILIPDLAQ-HLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-------VEGDTPLVK 72 (73)
T ss_pred CcccCCCCC-CccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-------ECCCCEEEE
Confidence 589999999 77666666 457999999999999999999999999999999999999887654 556789987
Q ss_pred E
Q 044104 100 V 100 (128)
Q Consensus 100 i 100 (128)
|
T Consensus 73 i 73 (73)
T cd06663 73 I 73 (73)
T ss_pred C
Confidence 4
No 11
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=98.82 E-value=1.1e-08 Score=73.97 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=54.6
Q ss_pred ecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEE
Q 044104 23 GITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVE 101 (128)
Q Consensus 23 Git~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~ 101 (128)
+.+....-+.|+++.+ +.++|++|++||++|.||++|+..+|.||.+|+|.+|- .++-+.+ -||+- |++|+
T Consensus 69 ~~~~V~SPm~Gtv~~~-~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Il---v~~G~~V---e~G~~-L~~I~ 139 (140)
T COG0511 69 GGTQVTSPMVGTVYKP-FVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEIL---VKNGDPV---EYGDP-LAVIE 139 (140)
T ss_pred cCceEecCcceEEEEE-eeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEE---ecCCCcc---CCCCE-EEEec
Confidence 4444556678888885 66999999999999999999999999999999999993 3444444 23442 55554
No 12
>KOG3266 consensus Predicted glycine cleavage system H protein [Amino acid transport and metabolism]
Probab=98.74 E-value=1.2e-07 Score=69.54 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=85.6
Q ss_pred CceEEEEeCCEEEEecCh--hhhhhcCCeeEEEc----------------CCCCcEecCCCeEEEEEEcc-ccceeecCc
Q 044104 9 SHEWVKVDGNSATIGITD--HAQDHLGDVVYVEL----------------PEVGVTVKQDASFGAVESVK-ATSDVNSPV 69 (128)
Q Consensus 9 ~h~Wv~~~~~~~~vGit~--~a~~~lG~i~~v~l----------------p~~G~~v~~g~~l~~iEs~k-~~~~i~sPv 69 (128)
+|.-.+-.+..+.|++-. .+.+.-+.|..+++ ..-+..++...+||.+-..+ ...-++|.|
T Consensus 34 D~~i~~HsnricvI~la~~hp~l~~g~~i~sv~~~ign~dRsqnkVSGK~KkgAl~lq~~s~Lc~~~~a~g~~y~V~scV 113 (172)
T KOG3266|consen 34 DHCIYQHSNRICVITLAPSHPALQSGKTIKSVTFQIGNCDRSQNKVSGKGKKGALILQELSPLCKFKTADGSTYVVRSCV 113 (172)
T ss_pred CceEEecCCceEEEEecCCCchhhcccceeeeecccccchhhhheeccccccccEeeccCCcceeEEecCCCeEEEeeee
Confidence 355444456677777754 34555666766664 23335566777888888876 788899999
Q ss_pred ceEEEEEehhhhcCCCcccCCCCCCCcEEEEEECCh---hhHhhcCCHHHHHHHHh
Q 044104 70 SGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNA---GELKKLMDADQYTKFCE 122 (128)
Q Consensus 70 sG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~~~---~~~~~Ll~~~~Y~~~~~ 122 (128)
.|++++||++|..+|++|+..|..+|.++-+-|.-. +..+.||+.++|..-.+
T Consensus 114 rG~LvEvN~rl~~~P~ll~~~pd~qGy~aI~lp~~e~~t~~~~~llt~eqy~ek~~ 169 (172)
T KOG3266|consen 114 RGTLVEVNERLKTTPDLLREAPDNQGYIAILLPAIEEETEIKESLLTQEQYEEKSE 169 (172)
T ss_pred ceeEEEeehhhccCcHHHHhCCCcCcEEEEEecccccccccccccCCHHHHHHHHh
Confidence 999999999999999999999999998776666432 34579999999987654
No 13
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.69 E-value=3.6e-08 Score=62.75 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=49.1
Q ss_pred cChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 24 ITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 24 it~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
||.......|.|..+.+ ..|+.|++|++++++|++|+..++.||++|+|.+++-..
T Consensus 1 ~~~i~a~~~G~i~~~~v-~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~ 56 (70)
T PRK08225 1 MTKVYASMAGNVWKIVV-KVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQE 56 (70)
T ss_pred CCeEeCCCCEEEEEEEe-CCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecC
Confidence 45667788899999865 669999999999999999999999999999999997543
No 14
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=98.66 E-value=5.2e-08 Score=62.34 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=45.7
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
.....|+|..+.. +.|+.|++||+++.+|++|+..++.||++|+|.+++-+.
T Consensus 6 ~a~~~G~i~~~~v-~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~ 57 (71)
T PRK05889 6 RAEIVASVLEVVV-NEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSV 57 (71)
T ss_pred eCCCCEEEEEEEe-CCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCC
Confidence 3556788888855 889999999999999999999999999999999998543
No 15
>PRK06748 hypothetical protein; Validated
Probab=98.41 E-value=5.8e-07 Score=59.81 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=45.3
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEE-ccccceeecCcceEEEEEehhhh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVES-VKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs-~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
..+.|+|..+ +.++|+.|++||+++.||+ .|...++.||.+|+|.+++-+..
T Consensus 9 sp~~G~I~~w-~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~G 61 (83)
T PRK06748 9 SPCYGKVEKL-FVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEG 61 (83)
T ss_pred cCCcEEEEEE-EeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCC
Confidence 4567888888 4599999999999999999 88888999999999999985544
No 16
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=98.38 E-value=6.9e-07 Score=57.65 Aligned_cols=40 Identities=35% Similarity=0.517 Sum_probs=37.4
Q ss_pred cCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 40 LPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
+.++|+.|++||+++.||++|+..++.||.+|+|.++..+
T Consensus 21 ~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~ 60 (74)
T PF00364_consen 21 LVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVE 60 (74)
T ss_dssp SSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESST
T ss_pred EECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEEC
Confidence 4699999999999999999999999999999999999654
No 17
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.26 E-value=2.1e-06 Score=61.53 Aligned_cols=54 Identities=17% Similarity=0.281 Sum_probs=46.8
Q ss_pred hhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 27 HAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 27 ~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
....+-|.|..+.+ ..|+.|++||+|+.+|++|+..+|.||.+|+|.+++-+..
T Consensus 64 v~Ap~~G~V~~i~V-~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~G 117 (130)
T PRK06549 64 MPSPMPGTILKVLV-AVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPG 117 (130)
T ss_pred EECCCCEEEEEEEe-CCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCC
Confidence 34556788888855 8899999999999999999999999999999999986654
No 18
>PRK07051 hypothetical protein; Validated
Probab=98.24 E-value=2.1e-06 Score=56.20 Aligned_cols=51 Identities=27% Similarity=0.334 Sum_probs=42.3
Q ss_pred hhhhcCCeeE-------EEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 28 AQDHLGDVVY-------VELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 28 a~~~lG~i~~-------v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
.....|++.. + +...|+.|++|++++++|++|+..++.||++|+|.+++.+
T Consensus 7 ~ap~~g~~~~~~~~~~~~-~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~ 64 (80)
T PRK07051 7 VSPLPGTFYRRPSPDAPP-YVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVE 64 (80)
T ss_pred eCCCceEEEecCCCCCCC-ccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcC
Confidence 3445666655 3 3478999999999999999999999999999999999744
No 19
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=98.22 E-value=3.7e-06 Score=51.71 Aligned_cols=49 Identities=29% Similarity=0.389 Sum_probs=41.5
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
..-|.+..+. ...|+.|++|++++.+++.+...++.||.+|.|..++..
T Consensus 5 ~~~G~v~~~~-v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~ 53 (67)
T cd06850 5 PMPGTVVKVL-VKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVK 53 (67)
T ss_pred CccEEEEEEE-eCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEEC
Confidence 3456666554 478999999999999999999999999999999998754
No 20
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=98.18 E-value=2.9e-06 Score=62.37 Aligned_cols=51 Identities=31% Similarity=0.417 Sum_probs=42.8
Q ss_pred hhhcCCeeEE------EcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 29 QDHLGDVVYV------ELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 29 ~~~lG~i~~v------~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
.-+.|.++.. -+.++|+.|++||++|.||++|+..++.||.+|+|+++..+
T Consensus 85 sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~ 141 (156)
T TIGR00531 85 SPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVE 141 (156)
T ss_pred CCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeC
Confidence 4455666653 14589999999999999999999999999999999999644
No 21
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.10 E-value=5.9e-06 Score=60.67 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=36.8
Q ss_pred cCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEeh
Q 044104 40 LPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~ 78 (128)
+..+|+.|++||++|.||++|+..++.||++|+|+++..
T Consensus 101 ~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v 139 (155)
T PRK06302 101 FVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILV 139 (155)
T ss_pred ccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEc
Confidence 468999999999999999999999999999999999964
No 22
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.10 E-value=6.2e-06 Score=65.58 Aligned_cols=63 Identities=22% Similarity=0.264 Sum_probs=49.2
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEEC
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMD 103 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~ 103 (128)
|+|+.+ +.++|+.|++||+|+.||++|+..++.||.+|+|.+++....+ .+ +.|. -|+++.+.
T Consensus 17 g~~~~~-~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~---~v---~~g~-~l~~i~~~ 79 (371)
T PRK14875 17 GKVAGW-LVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE---TL---PVGA-LLAVVADA 79 (371)
T ss_pred EEEEEE-EcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC---Ee---CCCC-EEEEEecC
Confidence 667766 4589999999999999999999999999999999999755442 22 2233 47777653
No 23
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=98.06 E-value=7.6e-06 Score=60.12 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=46.5
Q ss_pred hhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 27 HAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 27 ~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
......|.|..+. .++|+.|++||+++.+|++|+..++.||.+|+|.+++.+..
T Consensus 87 v~ap~~G~I~~~~-V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~G 140 (153)
T PRK05641 87 VTAPMPGKILRIL-VREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEG 140 (153)
T ss_pred EECCCCeEEEEEE-eCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCC
Confidence 3456678888774 59999999999999999999999999999999999985543
No 24
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=98.00 E-value=1e-05 Score=64.14 Aligned_cols=50 Identities=22% Similarity=0.337 Sum_probs=42.2
Q ss_pred hhcCCeeEE------EcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 30 DHLGDVVYV------ELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 30 ~~lG~i~~v------~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
.+.|.++.. -+..+|+.|++||+|+.||++|+..+|.||.+|+|++++.+
T Consensus 203 PmaGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVk 258 (274)
T PLN02983 203 PMAGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAE 258 (274)
T ss_pred CcCeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecC
Confidence 345655553 14589999999999999999999999999999999999855
No 25
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=97.88 E-value=2.2e-05 Score=65.92 Aligned_cols=48 Identities=31% Similarity=0.422 Sum_probs=41.1
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|.|..+ +.++|+.|++||+|++||++|+..++.||.+|+|.++.-+..
T Consensus 59 g~I~~w-~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G 106 (418)
T PTZ00144 59 GTVVEW-KKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG 106 (418)
T ss_pred EEEEEE-EeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCC
Confidence 455555 347899999999999999999999999999999999975544
No 26
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=97.85 E-value=2.4e-05 Score=66.38 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=51.9
Q ss_pred ceEEEEe----CCEEEEecChhhhh-hcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 10 HEWVKVD----GNSATIGITDHAQD-HLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 10 h~Wv~~~----~~~~~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
..|+++- ++...|-|-+.+.. .-|+|..+ +.++|+.|++||+|+.||++|+..+|.||.+|+|.++.-+..
T Consensus 78 ~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w-~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eG 153 (463)
T PLN02226 78 QRWVRPFSSESGDTVEAVVPHMGESITDGTLATF-LKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEG 153 (463)
T ss_pred hhcccccccccCCceEEecCCCCCCcceEEEEEE-EeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCC
Confidence 4687753 22334444444432 22556666 459999999999999999999999999999999999975544
No 27
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=97.81 E-value=3.6e-05 Score=67.17 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=44.1
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
..+-|.|+.+. .++|+.|++||++++||++|+..++.||++|+|.++..+.
T Consensus 530 apm~G~V~~~~-V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~ 580 (596)
T PRK14042 530 VAIPGSIIAIH-VSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQK 580 (596)
T ss_pred cCcceEEEEEE-eCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCC
Confidence 44567787774 4889999999999999999999999999999999997543
No 28
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.78 E-value=4.3e-05 Score=66.55 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=43.3
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
..+.|.|+.+ +.++|+.|++||+++.||++|+..++.||++|+|.+++-+
T Consensus 522 ap~~G~v~~~-~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~ 571 (582)
T TIGR01108 522 APIAGSIVKV-KVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVK 571 (582)
T ss_pred CCccEEEEEE-EeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeC
Confidence 3445667766 4599999999999999999999999999999999998744
No 29
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=97.77 E-value=4.1e-05 Score=66.81 Aligned_cols=50 Identities=18% Similarity=0.253 Sum_probs=43.1
Q ss_pred hcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 31 HLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 31 ~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
+.|.|..+. .++|+.|++||++++||++|+..+|.||++|+|.+++....
T Consensus 531 ~~G~I~~~~-V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~G 580 (593)
T PRK14040 531 LAGNIFKVI-VTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEG 580 (593)
T ss_pred ccEEEEEEE-eCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCC
Confidence 445666664 49999999999999999999999999999999999986543
No 30
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=97.74 E-value=4.2e-05 Score=63.91 Aligned_cols=49 Identities=33% Similarity=0.394 Sum_probs=43.4
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhc
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~ 82 (128)
|+|... +.++|+.|++||+|+.||++|...++.||.+|+|.++..+..+
T Consensus 17 G~I~~W-~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~ 65 (404)
T COG0508 17 GTIVEW-LKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD 65 (404)
T ss_pred EEEEEE-ecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC
Confidence 566666 5699999999999999999999999999999999999776554
No 31
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=97.65 E-value=8.9e-05 Score=64.20 Aligned_cols=74 Identities=19% Similarity=0.205 Sum_probs=57.4
Q ss_pred CCceEEEEeCCE------EEEecCh--------hhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEE
Q 044104 8 DSHEWVKVDGNS------ATIGITD--------HAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKV 73 (128)
Q Consensus 8 ~~h~Wv~~~~~~------~~vGit~--------~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V 73 (128)
.+|+|+...+.. -.+|... ...-+-|.|+.|.+ ..|+.|.+||+|+++|++||...|.+|.+|+|
T Consensus 545 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~l~aPMpG~v~~v~V-~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V 623 (645)
T COG4770 545 GGGLTLFWGGGSPRIAELDKLGGAKVAAASSGELLAPMPGTVVSVAV-KEGQEVSAGDLLVVLEAMKMENTLRAPRDGVV 623 (645)
T ss_pred CCceEEecCCcCcccccccccccccccCCCCCceecCCCceEEEEEe-cCCCEecCCCeEEEeEehhcccceecCcCcEE
Confidence 567888766531 1233311 23456799999966 89999999999999999999999999999999
Q ss_pred EEEehhhhc
Q 044104 74 VEVNEELSS 82 (128)
Q Consensus 74 ~~vN~~l~~ 82 (128)
..+|-+..+
T Consensus 624 ~~v~v~~Gd 632 (645)
T COG4770 624 AKLAVAEGD 632 (645)
T ss_pred EEEEecCCC
Confidence 999866543
No 32
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=97.64 E-value=6.7e-05 Score=70.00 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=47.6
Q ss_pred cChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 24 ITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 24 it~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
.......+-|+|..+. .++|+.|++||+++.||++|+..++.||.+|+|.+++-+.
T Consensus 1132 ~~~v~a~~~G~v~~~~-v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~ 1187 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVL-VEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQP 1187 (1201)
T ss_pred CcEEeCCceEEEEEEE-eCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCC
Confidence 3334456778888884 4899999999999999999999999999999999997543
No 33
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.63 E-value=9.3e-05 Score=68.77 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=45.5
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
+..+-|.|+.+.+ ++|+.|++||+|++||++|+..+|.||++|+|.++.-+..
T Consensus 1078 ~a~~~G~v~~~~v-~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G 1130 (1143)
T TIGR01235 1078 GAPMPGVIIEVKV-SSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAG 1130 (1143)
T ss_pred ecCCCcEEEEEEe-CCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCC
Confidence 3456678887744 7899999999999999999999999999999999975443
No 34
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=97.59 E-value=0.00011 Score=61.40 Aligned_cols=48 Identities=23% Similarity=0.301 Sum_probs=41.8
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|.|..+ +.++|+.|++||+++.||++|+..++.||.+|+|.++.-+..
T Consensus 17 g~i~~w-~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G 64 (407)
T PRK05704 17 ATIATW-HKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEG 64 (407)
T ss_pred EEEEEE-EeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCC
Confidence 556666 458999999999999999999999999999999998875544
No 35
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=97.57 E-value=0.00011 Score=64.03 Aligned_cols=51 Identities=27% Similarity=0.367 Sum_probs=43.7
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
...|.|..+. .++|+.|++|+++++||++|+..++.||++|+|.++..+..
T Consensus 528 p~~G~v~~~~-V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G 578 (592)
T PRK09282 528 PMPGTVVKVK-VKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEG 578 (592)
T ss_pred CCcEEEEEEE-eCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCC
Confidence 4456677764 48999999999999999999999999999999999975543
No 36
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=97.56 E-value=7.5e-05 Score=67.05 Aligned_cols=49 Identities=29% Similarity=0.407 Sum_probs=44.5
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEeh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~ 78 (128)
..+.|.|+.|.+ ..|++|++||+++++|++||...|.+|++|+|.+|-.
T Consensus 1084 ApmpG~Vv~v~V-~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V 1132 (1149)
T COG1038 1084 APMPGVVVEVKV-KKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLV 1132 (1149)
T ss_pred CCCCCceEEEEE-ccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEe
Confidence 457789998855 8999999999999999999999999999999999853
No 37
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.55 E-value=0.00012 Score=68.06 Aligned_cols=51 Identities=27% Similarity=0.386 Sum_probs=44.2
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
..+-|.|+.+.+ ++|+.|++||+++++|++|+..++.||++|+|.+++.+-
T Consensus 1081 apm~G~v~~i~v-~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~ 1131 (1146)
T PRK12999 1081 APMPGSVVTVLV-KEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKA 1131 (1146)
T ss_pred CCceEEEEEEEc-CCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCC
Confidence 445577777744 889999999999999999999999999999999997553
No 38
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=97.46 E-value=0.00022 Score=59.57 Aligned_cols=48 Identities=31% Similarity=0.351 Sum_probs=41.8
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|.|+.+ +..+|+.|++||+++.+|++|+..++.||.+|+|.++..+..
T Consensus 15 g~i~~w-~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG 62 (403)
T TIGR01347 15 GTVAEW-HKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG 62 (403)
T ss_pred EEEEEE-EeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCC
Confidence 456665 458999999999999999999999999999999999875544
No 39
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=97.27 E-value=0.00037 Score=61.18 Aligned_cols=47 Identities=32% Similarity=0.442 Sum_probs=40.0
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.|..+ +.++|+.|++||+|+.||++|+..++.||.+|+|.++.-+-
T Consensus 219 g~v~~w-~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~ 265 (633)
T PRK11854 219 VEVTEV-MVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNV 265 (633)
T ss_pred eEEEEE-EecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCC
Confidence 455555 34789999999999999999999999999999999876443
No 40
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=97.25 E-value=0.00046 Score=60.22 Aligned_cols=48 Identities=27% Similarity=0.441 Sum_probs=40.8
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|.|..+ +.++|+.|++||+|+.||++|+..++.||.+|+|.++.-+..
T Consensus 150 g~i~~w-~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G 197 (590)
T TIGR02927 150 GTITQW-LKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEED 197 (590)
T ss_pred EEEEEE-EeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCC
Confidence 345444 457999999999999999999999999999999998876554
No 41
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=97.24 E-value=0.00057 Score=60.02 Aligned_cols=45 Identities=36% Similarity=0.431 Sum_probs=40.0
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEeh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~ 78 (128)
|.|..+ +..+|+.|++|++|+.||++|+..++.||.+|+|.++.-
T Consensus 15 g~i~~~-~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~ 59 (633)
T PRK11854 15 VEVTEI-LVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKV 59 (633)
T ss_pred EEEEEE-EeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEe
Confidence 566666 358999999999999999999999999999999998765
No 42
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=97.22 E-value=0.0012 Score=39.69 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=39.6
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.+..+.. ..|+.+..|++++.++..+....+.+|.+|+|...+...
T Consensus 15 g~i~~~~~-~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~ 61 (74)
T cd06849 15 GTIVEWLV-KEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEE 61 (74)
T ss_pred EEEEEEEE-CCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCC
Confidence 45555433 889999999999999999999999999999998887443
No 43
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=97.19 E-value=0.0005 Score=59.49 Aligned_cols=48 Identities=40% Similarity=0.446 Sum_probs=40.8
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|.|..+ +.++|+.|++|++++.||++|+..+|.||.+|+|.+++.+..
T Consensus 130 g~i~~w-~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G 177 (546)
T TIGR01348 130 VTVIEV-LVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVG 177 (546)
T ss_pred eEEeEE-eeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCC
Confidence 344444 358999999999999999999999999999999999986653
No 44
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=97.16 E-value=0.00056 Score=46.96 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=45.5
Q ss_pred CEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCc
Q 044104 18 NSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPAL 86 (128)
Q Consensus 18 ~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~l 86 (128)
+.+.|=| ++.+|.-... +..+|++|++||.|+..+. -.-..++||+||+|.++......++..
T Consensus 28 ~~v~ipL----~qh~G~~~~p-~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~~~~~~~g~~ 90 (101)
T PF13375_consen 28 KKVVIPL----RQHIGAPAEP-VVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIEKRPIPHGSK 90 (101)
T ss_pred CEEEEEC----cccCCCcceE-EEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEeeeEcCCCCC
Confidence 3555544 3345544433 4589999999999999975 336789999999999998776654443
No 45
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=97.13 E-value=0.0014 Score=48.13 Aligned_cols=46 Identities=33% Similarity=0.410 Sum_probs=34.2
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccc-cceeecCcceEEEEEehh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKA-TSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~-~~~i~sPvsG~V~~vN~~ 79 (128)
|-.+++ ....|++|.+|+.|+.+.+.|. +..++||++|+|+.+|+.
T Consensus 89 G~~v~~-i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~ 135 (150)
T PF09891_consen 89 GYQVYP-IVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEI 135 (150)
T ss_dssp SSEEEE-SS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEE
T ss_pred ceEEEE-EcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEec
Confidence 444444 5689999999999999999885 678999999999999865
No 46
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=97.09 E-value=0.00086 Score=57.91 Aligned_cols=47 Identities=40% Similarity=0.507 Sum_probs=39.7
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|+|... +..+|+.|++|++++.||++|+..++.||++|+|.++..+.
T Consensus 133 g~i~~w-~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~ 179 (547)
T PRK11855 133 VEVIEW-LVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKV 179 (547)
T ss_pred eEEeEE-EeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCC
Confidence 444444 34799999999999999999999999999999999886553
No 47
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=97.02 E-value=0.0013 Score=56.74 Aligned_cols=47 Identities=34% Similarity=0.442 Sum_probs=41.4
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.|..+ +.++|+.|++|++++.||++|+..++.||.+|+|..++...
T Consensus 16 g~i~~~-~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~ 62 (547)
T PRK11855 16 VEVIEW-LVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKV 62 (547)
T ss_pred EEEEEE-EcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCC
Confidence 566665 34999999999999999999999999999999999998654
No 48
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=96.98 E-value=0.0013 Score=55.25 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=39.5
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEeh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~ 78 (128)
|+|..+ +..+|+.|++||+++.+|++|+..++.||.+|+|.++.-
T Consensus 13 g~i~~w-~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v 57 (416)
T PLN02528 13 CELLRW-FVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINF 57 (416)
T ss_pred EEEEEE-EeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEe
Confidence 455555 458999999999999999999999999999999988764
No 49
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=96.90 E-value=0.0018 Score=56.04 Aligned_cols=47 Identities=32% Similarity=0.429 Sum_probs=41.5
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.|..+ +.++|+.|++|+++++||++|+..++.||++|+|.+++-..
T Consensus 14 g~i~~~-~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~ 60 (546)
T TIGR01348 14 GEVIEV-LVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKV 60 (546)
T ss_pred eEEEEE-EeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecC
Confidence 566666 44999999999999999999999999999999999887654
No 50
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=96.84 E-value=0.00069 Score=56.14 Aligned_cols=85 Identities=26% Similarity=0.388 Sum_probs=59.6
Q ss_pred eEEEEeC-CEEEEecChhhhhhc-CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCccc
Q 044104 11 EWVKVDG-NSATIGITDHAQDHL-GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVN 88 (128)
Q Consensus 11 ~Wv~~~~-~~~~vGit~~a~~~l-G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln 88 (128)
+|-.... +.++|-.-.|+-.+- |++... +.++|++|++++.++.||.+|...++.||.+|+|.+++ ..+-+.+.
T Consensus 63 ~~~~~~~ts~vtv~vP~faESiteG~l~~~-lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~l---vk~gdtV~ 138 (457)
T KOG0559|consen 63 LWARVRSTSVVTVEVPPFAESITEGDLAQW-LKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELL---VKDGDTVT 138 (457)
T ss_pred hheeeeccceeEEecCCcccccccchHHHH-hhCcccccccchhheeeeccceeeeccCCCcceeeEEe---cCCCCccc
Confidence 3444332 356666666665444 555533 57999999999999999999999999999999999995 33333332
Q ss_pred CCCCCCCcEEEEEEC
Q 044104 89 SSPYEDGWIIKVEMD 103 (128)
Q Consensus 89 ~dpy~~gWl~~i~~~ 103 (128)
- + .=|++|++.
T Consensus 139 ~---g-~~la~i~~g 149 (457)
T KOG0559|consen 139 P---G-QKLAKISPG 149 (457)
T ss_pred C---C-ceeEEecCC
Confidence 1 2 237888773
No 51
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=96.79 E-value=0.0019 Score=54.52 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=41.9
Q ss_pred CeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhc
Q 044104 34 DVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 34 ~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~ 82 (128)
.|..+ +.++|+.|+.|++++.||+.|...++.||.+|+|.+++.+..+
T Consensus 15 ~i~~w-~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~ 62 (435)
T TIGR01349 15 NLAKW-LKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT 62 (435)
T ss_pred EEEEE-EeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC
Confidence 44444 3589999999999999999999999999999999999877665
No 52
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=96.78 E-value=0.0029 Score=52.70 Aligned_cols=49 Identities=39% Similarity=0.521 Sum_probs=41.8
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhc
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~ 82 (128)
|.|..+ +.+.|+.+++|++++.||++|...++.||.+|+|.++.....+
T Consensus 17 g~i~~w-~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~ 65 (411)
T PRK11856 17 GEIVEW-LVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD 65 (411)
T ss_pred EEEEEE-EeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC
Confidence 445554 4589999999999999999999999999999999998766554
No 53
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=96.60 E-value=0.0033 Score=54.51 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=41.0
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|+|... +.++|+.|++|++++.||+.|...++.||.+|+|.++-.+..
T Consensus 127 g~I~~W-~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG 174 (539)
T PLN02744 127 GNIARW-LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 174 (539)
T ss_pred eEEEEE-EecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCC
Confidence 445544 458999999999999999999999999999999998875554
No 54
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=96.27 E-value=0.0075 Score=51.39 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=40.8
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|+|..+ +.++|+.+++|++++.||+.|+..++.||.+|+|.++..+..
T Consensus 17 g~i~~w-~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G 64 (464)
T PRK11892 17 GTLAKW-LKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEG 64 (464)
T ss_pred eEEEEE-EecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCC
Confidence 344444 357899999999999999999999999999999988876655
No 55
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=96.26 E-value=0.0071 Score=52.91 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=39.6
Q ss_pred CeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 34 DVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 34 ~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
.|..+ +.++|+.|+.|++++.+|++|+..++.||.+|+|.+++-..
T Consensus 18 ~i~~w-~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~ 63 (590)
T TIGR02927 18 TITQW-LKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEE 63 (590)
T ss_pred EEEEE-EECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecC
Confidence 45555 35899999999999999999999999999999998876544
No 56
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=96.15 E-value=0.0067 Score=48.09 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCCCcEecCCCeEEEEEEcc-ccceeecCcceEEEEEehhhh
Q 044104 41 PEVGVTVKQDASFGAVESVK-ATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k-~~~~i~sPvsG~V~~vN~~l~ 81 (128)
.++|++|++||+|+. ..| --..+.||+||+|.+||.=..
T Consensus 45 VkeGD~Vk~Gq~LF~--dK~~p~v~ftsPvsG~V~~I~RG~r 84 (257)
T PF05896_consen 45 VKEGDRVKAGQPLFE--DKKNPGVKFTSPVSGTVKAINRGER 84 (257)
T ss_pred eccCCEEeCCCeeEe--eCCCCCcEEecCCCeEEEEEecCCC
Confidence 489999999999875 322 345799999999999997443
No 57
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=96.10 E-value=0.0073 Score=53.97 Aligned_cols=48 Identities=23% Similarity=0.411 Sum_probs=44.1
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEe
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
.-+.|+|..|.+ ..|++|+|||+++++.++|+..-+.||.+|+|-++.
T Consensus 1111 APMpG~vieikv-k~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~ 1158 (1176)
T KOG0369|consen 1111 APMPGTVIEIKV-KEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVH 1158 (1176)
T ss_pred CCCCCceEEEEE-ecCceecCCCceEeeecceeeeeecCCCCceeeEEE
Confidence 567789988877 789999999999999999999999999999999885
No 58
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=96.02 E-value=0.0078 Score=51.10 Aligned_cols=37 Identities=27% Similarity=0.293 Sum_probs=30.3
Q ss_pred cCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEe
Q 044104 40 LPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
+.++|++|++||+|+.-.+. --..++||+||+|++|+
T Consensus 45 ~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 45 KVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred EeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 34899999999999944332 24789999999999996
No 59
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=95.97 E-value=0.015 Score=48.51 Aligned_cols=54 Identities=13% Similarity=0.141 Sum_probs=41.8
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc------------------------------------------------
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVK------------------------------------------------ 60 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k------------------------------------------------ 60 (128)
.+.-|-|..+.....|++|++||+|++|.+..
T Consensus 128 arv~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~ 207 (409)
T PRK09783 128 ARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQ 207 (409)
T ss_pred CCcCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCC
Confidence 34556777765468999999999999998421
Q ss_pred ccceeecCcceEEEEEehhhhc
Q 044104 61 ATSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 61 ~~~~i~sPvsG~V~~vN~~l~~ 82 (128)
....|+||++|.|.+.|-...+
T Consensus 208 ~~~~I~AP~dGvV~~~~v~~G~ 229 (409)
T PRK09783 208 TRFTLKAPIDGVITAFDLRAGM 229 (409)
T ss_pred CcEEEECCCCeEEEEEECCCCC
Confidence 1237999999999999877654
No 60
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=95.77 E-value=0.012 Score=52.52 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=32.4
Q ss_pred cCCCCcEecCCCeEEEEEEccc-cceeecCcceEEEEEehhhh
Q 044104 40 LPEVGVTVKQDASFGAVESVKA-TSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k~-~~~i~sPvsG~V~~vN~~l~ 81 (128)
+..+|++|.+||+|+.- .+. -..|+||+||+|++|+....
T Consensus 52 ~V~~GD~V~~GQ~i~~~--~~~~s~~vhApvSG~V~~I~~~~~ 92 (695)
T PRK05035 52 CVKVGDRVLKGQPLTQG--DGRMSLPVHAPTSGTVVAIEPHPT 92 (695)
T ss_pred eeCcCCEEcCCCEeeec--CCCceeEEeCCCCeEEeeeccccc
Confidence 34899999999999944 343 47899999999999986543
No 61
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=95.58 E-value=0.013 Score=49.34 Aligned_cols=58 Identities=21% Similarity=0.414 Sum_probs=40.9
Q ss_pred CEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 18 NSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 18 ~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
+.+.|=+.++ +|.... -+.++|++|++||+|+...+ ..-..++||+||+|++|+....
T Consensus 29 ~~v~i~l~~~----~g~~~~-~~V~~Gd~V~~Gq~i~~~~~-~~~~~~ha~vsG~V~~i~~~~~ 86 (435)
T TIGR01945 29 QELIVPLSQH----IGAPAE-PIVKVGDKVLKGQKIAKADG-FVSAPIHAPTSGTVVAIEERVS 86 (435)
T ss_pred CEEEEECccC----CCCCCc-eeeCCCCEECCCCEeccCCC-cceeeeecCCCeEEEEeccccc
Confidence 3556655543 333222 13489999999999998843 2367899999999999986543
No 62
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=95.52 E-value=0.013 Score=49.76 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=32.1
Q ss_pred cCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEeh
Q 044104 40 LPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~ 78 (128)
+.++|++|++||+|+.-... .-..++||+||+|.+|+.
T Consensus 44 ~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 44 KVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR 81 (447)
T ss_pred EeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence 34899999999999976653 357899999999999975
No 63
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=95.41 E-value=0.022 Score=48.48 Aligned_cols=57 Identities=21% Similarity=0.231 Sum_probs=49.4
Q ss_pred EEEEecChhh-hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEE
Q 044104 19 SATIGITDHA-QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEV 76 (128)
Q Consensus 19 ~~~vGit~~a-~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~v 76 (128)
..+|+|-..- .-.-|+|+.. ..++|+.+..||.||.||++|+..+|-++-+|.+-+|
T Consensus 38 h~~i~MPALSPTMeeGnIvsW-~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKI 95 (470)
T KOG0557|consen 38 HKTFSMPALSPTMEEGNIVSW-KKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKI 95 (470)
T ss_pred ceEeecCCCCccccCCceeeE-eeccCCccCCCceEEEEecccceeeeeeccCCeeeee
Confidence 5677776665 3445999988 4599999999999999999999999999999999988
No 64
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=95.05 E-value=0.02 Score=49.69 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=47.1
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcC
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSS 83 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~ 83 (128)
.-+-|-|..| +.+.|+.|.+|+.+++++++|+...+.+|-+|+|-.++-++.++
T Consensus 606 aPMpG~Iekv-~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~ 659 (670)
T KOG0238|consen 606 APMPGIIEKV-LVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT 659 (670)
T ss_pred cCCCCeeeee-eccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc
Confidence 3455677777 55999999999999999999999999999999999999887764
No 65
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.01 E-value=0.095 Score=42.06 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=35.5
Q ss_pred cCCCCcEecCCCeEEEEEEc---cccceeecCcceEEEEEehhhh
Q 044104 40 LPEVGVTVKQDASFGAVESV---KATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~---k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
..+.|+.|++||.|+.|-.. ....+++||.+|.|..++....
T Consensus 243 ~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~~~p~ 287 (298)
T cd06253 243 AKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLREYPL 287 (298)
T ss_pred CcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEeecCCe
Confidence 46889999999999999773 3478899999999999876543
No 66
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.69 E-value=0.095 Score=41.69 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=35.0
Q ss_pred cCCCCcEecCCCeEEEEEEc--cccceeecCcceEEEEEehhhh
Q 044104 40 LPEVGVTVKQDASFGAVESV--KATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~--k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
..+.|+.|++||.++.|... ....+++||.+|.|........
T Consensus 233 ~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~~~~~ 276 (287)
T cd06251 233 LVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRNNLPL 276 (287)
T ss_pred ecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEecCCCc
Confidence 56899999999999999773 4567899999999998865544
No 67
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.42 E-value=0.18 Score=40.70 Aligned_cols=53 Identities=11% Similarity=0.159 Sum_probs=40.3
Q ss_pred cCCCCcEecCCCeEEEEEEc----cccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEE
Q 044104 40 LPEVGVTVKQDASFGAVESV----KATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVE 101 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~----k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~ 101 (128)
..+.|+.|++||.|+.|-.. +...+++||.+|.|...+....- +...|+++|-
T Consensus 258 ~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~~~~v---------~~G~~l~~i~ 314 (316)
T cd06252 258 LVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRPPGLV---------RRGDCLAVLA 314 (316)
T ss_pred ecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeCCCcc---------CCCCEEEEEe
Confidence 35789999999999999774 34678999999999998755321 2235777763
No 68
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.40 E-value=0.16 Score=41.38 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=34.1
Q ss_pred cCCCCcEecCCCeEEEEEEc----cccceeecCcceEEEEEehh
Q 044104 40 LPEVGVTVKQDASFGAVESV----KATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~----k~~~~i~sPvsG~V~~vN~~ 79 (128)
..+.|++|++||.++.|-.. +...+++||.+|.|..++..
T Consensus 269 ~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~~~ 312 (325)
T TIGR02994 269 MIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARHFP 312 (325)
T ss_pred ecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEeCC
Confidence 46889999999999999763 24778999999999998754
No 69
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=94.34 E-value=0.033 Score=48.10 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=43.7
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALV 87 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~ll 87 (128)
+...|.-. .-+..+|++|.+||+|..=++ ....++||+||+|.++-....-+|+-+
T Consensus 38 ~qh~g~~~-~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~~~~~~~~sgl 93 (529)
T COG4656 38 KQHIGAPG-ILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIEPANFPHPSGL 93 (529)
T ss_pred ecccCCcc-ceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeeeecccCCcccC
Confidence 34455531 123489999999999988777 789999999999999987777777654
No 70
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=94.24 E-value=0.049 Score=32.37 Aligned_cols=30 Identities=23% Similarity=0.202 Sum_probs=25.0
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
..-|.|..+.+ +.|+.|++||+|+++.+..
T Consensus 8 ~~~G~V~~v~V-~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 8 PVSGRVESVYV-KEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCCEEEEEEEe-cCCCEEcCCCEEEEECcHH
Confidence 34678888855 7999999999999998864
No 71
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=94.15 E-value=0.11 Score=41.35 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.8
Q ss_pred cCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEe
Q 044104 40 LPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
..+.|+.|++||.++.|.+ .+++||++|.|...=
T Consensus 178 ~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGli 211 (256)
T TIGR03309 178 TKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGLI 211 (256)
T ss_pred ccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEEe
Confidence 5689999999999999976 699999999999873
No 72
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=94.13 E-value=0.067 Score=41.87 Aligned_cols=30 Identities=13% Similarity=0.264 Sum_probs=24.0
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
...-|.|..+. ...|+.|++|++|+++.+.
T Consensus 31 a~~~G~V~~i~-v~~G~~V~kG~~L~~l~~~ 60 (322)
T TIGR01730 31 AEVAGKITKIS-VREGQKVKKGQVLARLDDD 60 (322)
T ss_pred ccccEEEEEEE-cCCCCEEcCCCEEEEECCH
Confidence 34458888774 4799999999999999763
No 73
>COG3608 Predicted deacylase [General function prediction only]
Probab=93.95 E-value=0.12 Score=42.48 Aligned_cols=54 Identities=22% Similarity=0.398 Sum_probs=42.1
Q ss_pred cCCCCcEecCCCeEEEEEEc---cccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEEC
Q 044104 40 LPEVGVTVKQDASFGAVESV---KATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMD 103 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~---k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~ 103 (128)
+.+.|++|++||.++.|-.. ....+++||++|.|...-.. -++ ..||++++-..
T Consensus 270 ~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~-----~~v-----~~Gdl~~~v~~ 326 (331)
T COG3608 270 LVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSL-----RLV-----QPGDLLKVVGR 326 (331)
T ss_pred eecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeec-----ccc-----CCCCeeeeecc
Confidence 45889999999999999875 66789999999999998432 222 45688877544
No 74
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=93.70 E-value=0.16 Score=40.53 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=32.7
Q ss_pred cCCCCcEecCCCeEEEEEEc--cccceeecCcceEEEEEe
Q 044104 40 LPEVGVTVKQDASFGAVESV--KATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~--k~~~~i~sPvsG~V~~vN 77 (128)
..+.|+.|++||.++.|-.. ....+++||.+|.|...|
T Consensus 245 ~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~~ 284 (293)
T cd06255 245 SVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGIH 284 (293)
T ss_pred ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee
Confidence 35889999999999999773 457789999999999984
No 75
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=93.54 E-value=0.11 Score=42.57 Aligned_cols=32 Identities=25% Similarity=0.165 Sum_probs=25.9
Q ss_pred hhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 27 HAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 27 ~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
...+.-|.|..+.+ +.|+.|++||.|+.|.+.
T Consensus 66 l~~~v~G~V~~v~v-~~Gd~VkkGq~La~ld~~ 97 (385)
T PRK09578 66 VRARVAGIVTARTY-EEGQEVKQGAVLFRIDPA 97 (385)
T ss_pred EeccCcEEEEEEEC-CCCCEEcCCCEEEEECCH
Confidence 34566788888744 899999999999999773
No 76
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.54 E-value=0.11 Score=37.82 Aligned_cols=44 Identities=34% Similarity=0.533 Sum_probs=36.3
Q ss_pred CCCCcEecCCCeEEEEEEcc-ccceeecCcceEEEEEehhhhcCC
Q 044104 41 PEVGVTVKQDASFGAVESVK-ATSDVNSPVSGKVVEVNEELSSSP 84 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k-~~~~i~sPvsG~V~~vN~~l~~~P 84 (128)
..+|.++.+|++|+.+.+.| .+.-+.+|.+|+|+-+-+.-...|
T Consensus 107 aDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi~E~t~kRp 151 (161)
T COG4072 107 ADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYIDEFTNKRP 151 (161)
T ss_pred ecccchhcCCCceeEEEecccceEEecCCCCcEEEEEeecccCCC
Confidence 57899999999999999977 466799999999999976433333
No 77
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=93.17 E-value=0.15 Score=41.48 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=25.4
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
...-|.|..+.+ +.|+.|++||+|+.|++.
T Consensus 66 a~~~G~V~~v~v-~~G~~V~kG~~L~~ld~~ 95 (370)
T PRK11578 66 AQVSGQLKTLSV-AIGDKVKKDQLLGVIDPE 95 (370)
T ss_pred cccceEEEEEEc-CCCCEEcCCCEEEEECcH
Confidence 456688988864 899999999999999873
No 78
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=93.16 E-value=0.14 Score=42.09 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=27.8
Q ss_pred ChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 25 TDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 25 t~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.....+.-|.|..+.+ ..|+.|++||.|+.|+..
T Consensus 62 ~~l~~~v~G~V~~i~v-~~G~~VkkGqvLa~ld~~ 95 (385)
T PRK09859 62 AEIRPQVGGIIIKRNF-IEGDKVNQGDSLYQIDPA 95 (385)
T ss_pred EEEeccCcEEEEEEEc-CCcCEecCCCEEEEECcH
Confidence 3445667788988866 899999999999999864
No 79
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.86 E-value=0.31 Score=38.69 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=34.1
Q ss_pred cCCCCcEecCCCeEEEEEE--ccccceeecCcceEEEEEehh
Q 044104 40 LPEVGVTVKQDASFGAVES--VKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs--~k~~~~i~sPvsG~V~~vN~~ 79 (128)
..+.|+.|++||.|+.|-. .....+++||.+|.|...+..
T Consensus 237 ~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~ 278 (288)
T cd06254 237 FVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT 278 (288)
T ss_pred ecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC
Confidence 3578999999999999966 355788999999999998764
No 80
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=92.83 E-value=0.12 Score=43.11 Aligned_cols=36 Identities=31% Similarity=0.362 Sum_probs=28.8
Q ss_pred CCCcEecCCCeEEEEEEccc-cceeecCcceEEEEEehh
Q 044104 42 EVGVTVKQDASFGAVESVKA-TSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 42 ~~G~~v~~g~~l~~iEs~k~-~~~i~sPvsG~V~~vN~~ 79 (128)
++|+.|++|++++ |..|. -.-|.||+||+|+++|.-
T Consensus 46 ~~gD~VkkGq~Lf--EdKknpgv~~Tap~sG~V~aI~RG 82 (447)
T COG1726 46 REGDAVKKGQVLF--EDKKNPGVVFTAPVSGKVTAIHRG 82 (447)
T ss_pred ccCCeeeccceee--ecccCCCeEEeccCCceEEEeecc
Confidence 7899999999886 44443 345899999999999864
No 81
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=92.74 E-value=0.16 Score=42.47 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=25.9
Q ss_pred hhhhhcCCeeEEEcCCCCcEecCCCeEEEEEE
Q 044104 27 HAQDHLGDVVYVELPEVGVTVKQDASFGAVES 58 (128)
Q Consensus 27 ~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs 58 (128)
...+.-|.|..+.+ +.|+.|++||+|+.|..
T Consensus 90 v~~~vsG~V~~i~v-~eG~~VkkGq~La~ld~ 120 (415)
T PRK11556 90 VRSRVDGQLMALHF-QEGQQVKAGDLLAEIDP 120 (415)
T ss_pred EEccccEEEEEEEC-CCCCEecCCCEEEEECc
Confidence 34567788888865 89999999999999965
No 82
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=92.40 E-value=0.5 Score=38.96 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=33.4
Q ss_pred cCCCCcEecCCCeEEEEEEc--ccccee--ecCcceEEEEEehhhh
Q 044104 40 LPEVGVTVKQDASFGAVESV--KATSDV--NSPVSGKVVEVNEELS 81 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~--k~~~~i--~sPvsG~V~~vN~~l~ 81 (128)
..+.|+.|++||.|+.|-.. ..+.++ .||.+|.|..++....
T Consensus 303 ~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~~~~~~ 348 (359)
T cd06250 303 RAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFARASRRF 348 (359)
T ss_pred ecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEecCCcc
Confidence 35889999999999999763 344455 9999999999875543
No 83
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=88.36 E-value=1.7 Score=30.75 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=35.1
Q ss_pred cCCCceE-EEEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 6 YADSHEW-VKVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 6 y~~~h~W-v~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
|...|-. ++.+++ .++|||+....+ |+-... +.+.|++|++||+|+++-..
T Consensus 50 ~~T~HA~gi~~~~G~evLiHiGidTV~L~--G~gF~~-~v~~Gd~V~~G~~l~~~D~~ 104 (121)
T TIGR00830 50 FPTKHAFGIESDSGVEILIHIGIDTVKLN--GEGFTS-HVEEGQRVKKGDPLLEFDLK 104 (121)
T ss_pred ccCCCEEEEEeCCCcEEEEEeeeceeecC--CCceEE-EecCCCEEcCCCEEEEEcHH
Confidence 4456755 444445 689999876554 443333 35999999999999998654
No 84
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=88.26 E-value=0.52 Score=45.70 Aligned_cols=45 Identities=18% Similarity=0.309 Sum_probs=39.2
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEe
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
.|+.+.. +.+.|+.|.+|++-+.||.+||+-++.|+.+|.|.-+-
T Consensus 693 ~GKLl~y-lVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~~i~ 737 (2196)
T KOG0368|consen 693 PGKLLQY-LVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQLIK 737 (2196)
T ss_pred CccceEE-EecCCCceecCCeeeehehhheeeeeeccCCceEEEec
Confidence 4666665 45899999999999999999999999999999998763
No 85
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=87.21 E-value=2 Score=30.48 Aligned_cols=51 Identities=22% Similarity=0.263 Sum_probs=34.6
Q ss_pred cCCCceE-EEEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 6 YADSHEW-VKVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 6 y~~~h~W-v~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
|...|.. ++.+++ .++||+.....+ |+-..+ +.+.|++|++|++|+.+-..
T Consensus 50 ~~T~HA~~i~~~~G~eiLiHiGidTv~l~--g~gF~~-~vk~Gd~V~~G~~l~~~D~~ 104 (124)
T cd00210 50 FPTKHAIGIESDSGVEILIHIGIDTVKLN--GEGFTS-HVEEGQRVKQGDKLLEFDLP 104 (124)
T ss_pred ccCCCEEEEEeCCCcEEEEEeeeeeeecC--CCceEE-EecCCCEEcCCCEEEEEcHH
Confidence 3456755 444444 689999876655 443333 34899999999999988543
No 86
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=85.14 E-value=1.2 Score=28.74 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.7
Q ss_pred cCCCCcEecCCCeEEEEEEcc
Q 044104 40 LPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k 60 (128)
..+.|+.|++||||++|-+..
T Consensus 37 ~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 37 HKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp SS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCEECCCCeEEEEEcCC
Confidence 368999999999999998864
No 87
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=84.64 E-value=3.5 Score=30.77 Aligned_cols=52 Identities=17% Similarity=0.259 Sum_probs=36.1
Q ss_pred cCCCceE-EEEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 6 YADSHEW-VKVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 6 y~~~h~W-v~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
|...|-- ++.+++ .+.|||+....+ |+-... +.+.|++|++||+|+.+-...
T Consensus 72 f~T~HAigi~t~~G~eiLIHiGiDTV~L~--G~gF~~-~Vk~Gd~Vk~G~~L~~~D~~~ 127 (169)
T PRK09439 72 FETNHAFSIESDSGVELFVHFGIDTVELK--GEGFKR-IAEEGQRVKVGDPIIEFDLPL 127 (169)
T ss_pred cCCCCEEEEEeCCCcEEEEEEeecccccC--CCceEE-EecCCCEEeCCCEEEEEcHHH
Confidence 4456755 455555 689999776444 554333 459999999999999986643
No 88
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=84.59 E-value=1.1 Score=27.88 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=23.4
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
....-|.|..+.+ ..|+.|..|++|+.||
T Consensus 42 ~s~~~G~v~~~~~-~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 42 VAEEAGTVKKINV-QEGDFVNEGDVLLEIE 70 (70)
T ss_pred eCCCCEEEEEEEe-cCCCEECCCCEEEEEC
Confidence 3456688887755 7799999999999986
No 89
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=80.02 E-value=2.2 Score=34.41 Aligned_cols=40 Identities=13% Similarity=0.122 Sum_probs=30.6
Q ss_pred EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+.--........-|.|..+.+ +.|+.|++||+|+.|.+.
T Consensus 43 ~v~~~~v~v~~~v~G~V~~v~V-~~G~~VkkGq~L~~ld~~ 82 (346)
T PRK10476 43 YIDADVVHVASEVGGRIVELAV-TENQAVKKGDLLFRIDPR 82 (346)
T ss_pred EEEeeeEEEcccCceEEEEEEe-CCCCEEcCCCEEEEECcH
Confidence 3333344445667799998854 999999999999999986
No 90
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=78.74 E-value=0.97 Score=37.81 Aligned_cols=40 Identities=30% Similarity=0.286 Sum_probs=36.9
Q ss_pred CCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 41 PEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
.+.|+.|.+-|++|.|.|+|+..+|.|-.+|+|..+--.+
T Consensus 86 VKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ 125 (474)
T KOG0558|consen 86 VKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSP 125 (474)
T ss_pred hhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCc
Confidence 5899999999999999999999999999999999886543
No 91
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=78.41 E-value=5.6 Score=31.07 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=34.1
Q ss_pred cCCCCcEecCCCeE--EEEEEc--cccceeecCcceEEEEEehhhh
Q 044104 40 LPEVGVTVKQDASF--GAVESV--KATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 40 lp~~G~~v~~g~~l--~~iEs~--k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
..+.|+.|++|+++ +.+-.. ....++.+|.+|.|+.+|....
T Consensus 234 ~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~~~~~~~ 279 (292)
T PF04952_consen 234 EVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIFIRESPY 279 (292)
T ss_dssp TSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEESECTSSE
T ss_pred eecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEEeCcccc
Confidence 34889999999999 776543 4566899999999999987644
No 92
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=78.22 E-value=11 Score=26.90 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=33.4
Q ss_pred cCCCceEE-EEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcccc
Q 044104 6 YADSHEWV-KVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKAT 62 (128)
Q Consensus 6 y~~~h~Wv-~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~ 62 (128)
|...|--. +.+++ .+.|||+....+ |+-... +.+.|++|++||+|+.+-...-.
T Consensus 54 ~~T~HAi~i~s~~G~eiLiHiGidTv~L~--G~gF~~-~v~~G~~V~~G~~L~~~D~~~i~ 111 (132)
T PF00358_consen 54 FPTKHAIGIRSDNGVEILIHIGIDTVKLN--GEGFET-LVKEGDKVKAGQPLIEFDLEKIK 111 (132)
T ss_dssp -TTSSEEEEEETTSEEEEEE-SBSGGGGT--TTTEEE-SS-TTSEE-TTEEEEEE-HHHHH
T ss_pred cCCCCEEEEEeCCCCEEEEEEccchhhcC--CcceEE-EEeCCCEEECCCEEEEEcHHHHH
Confidence 34456443 44455 689999987655 554443 55899999999999998765433
No 93
>PRK12784 hypothetical protein; Provisional
Probab=78.14 E-value=7.7 Score=25.61 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=27.8
Q ss_pred EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+.+|++ |.|..+++ .+|++|..+..|+.+|.+
T Consensus 45 ~v~vGiS-------G~I~~v~V-e~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 45 KVAVGIS-------GNIRLVNV-VVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred EEEEeee-------eeEEEEEe-ecCceecCCcEEEEEeec
Confidence 6889987 56666766 899999999999999875
No 94
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=78.02 E-value=2.1 Score=33.99 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=31.2
Q ss_pred CEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 18 NSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 18 ~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
..+.-.........-|.|..+.+ +.|+.|++||+|+.|++.
T Consensus 36 ~~v~~~~~~v~a~~~G~V~~i~v-~~G~~V~kGq~L~~ld~~ 76 (334)
T TIGR00998 36 AYVKANQLQVSSQVSGSVIEVNV-DDTDYVKQGDVLVRLDPT 76 (334)
T ss_pred ceEEcceEEEcccCceEEEEEEe-CCCCEEcCCCEEEEECch
Confidence 34444444455567789988854 899999999999999886
No 95
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=76.48 E-value=2.8 Score=34.68 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=33.4
Q ss_pred eCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 16 DGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 16 ~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
++..+.-.......+.-|.|..+.+ +.|+.|++||+|++|.+.
T Consensus 53 ~~a~v~~~~v~v~a~v~G~V~~v~V-~~Gd~VkkGqvL~~LD~~ 95 (390)
T PRK15136 53 DDAYVAGNQVQIMSQVSGSVTKVWA-DNTDFVKEGDVLVTLDPT 95 (390)
T ss_pred CCcEEeeeEEEEeccCCeEEEEEEc-CCCCEECCCCEEEEECcH
Confidence 3334444455666778899999966 899999999999999874
No 96
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=76.39 E-value=21 Score=28.17 Aligned_cols=51 Identities=20% Similarity=0.163 Sum_probs=34.4
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEEEccccc-------------------eee---cC----cceEEEEEehhhh
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVESVKATS-------------------DVN---SP----VSGKVVEVNEELS 81 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~-------------------~i~---sP----vsG~V~~vN~~l~ 81 (128)
-.-|.|..+.+ .+|+.|..|+++++|...+... .+. .| +.|+|..|.+...
T Consensus 210 P~~G~V~~~~~-~~G~~v~~g~~l~~i~~~~~~~v~~~v~e~~~~~i~~G~~v~v~~~~~~~~~~~~G~V~~Is~~~~ 286 (334)
T TIGR00998 210 PFDGYVARRFV-QVGQVVSPGQPLMAVVPAEQMYVEANFKETQLKNVRIGQPVTIRSDLYGSDVVFEGKVTGISMGTG 286 (334)
T ss_pred CCCcEEEEEec-CCCCEeCCCCeeEEEEcCCcEEEEEecCHHHHhhCCCCCEEEEEEecCCCCCEEEEEEEEECCCcc
Confidence 34577777755 7899999999999886653311 232 13 6799999987643
No 97
>PRK12784 hypothetical protein; Provisional
Probab=75.67 E-value=6.6 Score=25.92 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=44.7
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc-cccceeecCcceEEEEEehhhhcC
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV-KATSDVNSPVSGKVVEVNEELSSS 83 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~-k~~~~i~sPvsG~V~~vN~~l~~~ 83 (128)
..-.|.|..+- ...++.|..=++|+.|+.. +....+.--+||.|..+|-...+.
T Consensus 10 S~~~G~Vekif-i~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~ 64 (84)
T PRK12784 10 SSYEGKVEEIF-VNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ 64 (84)
T ss_pred CccccEEEEEE-EcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce
Confidence 34467888774 4788999999999999995 578889999999999999887753
No 98
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=75.29 E-value=2.9 Score=33.24 Aligned_cols=26 Identities=12% Similarity=0.160 Sum_probs=23.5
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
|.|..|.+ ..|+.|++|++|++|...
T Consensus 25 G~V~~i~V-~eG~~V~~G~~L~~ld~~ 50 (327)
T TIGR02971 25 DRIKKLLV-AEGDRVQAGQVLAELDSR 50 (327)
T ss_pred cEEEEEEc-cCCCEecCCcEEEEecCc
Confidence 89999965 899999999999999874
No 99
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=74.77 E-value=5.9 Score=29.29 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=42.3
Q ss_pred cCCCceEE-EEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEE
Q 044104 6 YADSHEWV-KVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVV 74 (128)
Q Consensus 6 y~~~h~Wv-~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~ 74 (128)
|-..|-.- +.+++ .+.|||+....+ |+-... +.+.|++|++||+|+.+--..-...=+|.+.-.|+
T Consensus 57 FpTkHAigi~t~~GvEiLiHiGiDTV~L~--GegF~~-~v~~Gd~Vk~Gd~Li~fDl~~Ik~~~~s~itpvVv 126 (156)
T COG2190 57 FPTKHAIGIETDEGVEILIHIGIDTVKLN--GEGFES-LVKEGDKVKAGDPLLEFDLDLIKAKGYSTITPVVV 126 (156)
T ss_pred eeCCcEEEEEcCCCcEEEEEeceeeEEEC--CcceEE-EeeCCCEEccCCEEEEECHHHHhhcCCCceeeEEE
Confidence 44456433 33445 689999987555 774433 56999999999999998654433333455544444
No 100
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=74.39 E-value=3.9 Score=29.26 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.6
Q ss_pred eeecCcceEEEEEeh
Q 044104 64 DVNSPVSGKVVEVNE 78 (128)
Q Consensus 64 ~i~sPvsG~V~~vN~ 78 (128)
.++||++|+|..+-+
T Consensus 41 ~v~AP~~G~v~~i~~ 55 (132)
T PF00358_consen 41 KVYAPVDGTVTMIFP 55 (132)
T ss_dssp EEEESSSEEEEEE-T
T ss_pred eEEEEeeEEEEEEcC
Confidence 689999999999853
No 101
>PRK07051 hypothetical protein; Validated
Probab=72.84 E-value=5.2 Score=25.65 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=23.9
Q ss_pred hhhhhcCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 27 HAQDHLGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 27 ~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
.....-|.|..+.. +.|+.|+.|++|+.|+
T Consensus 50 i~a~~~G~v~~i~~-~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 50 VEAEAAGRVVEFLV-EDGEPVEAGQVLARIE 79 (80)
T ss_pred EeCCCCEEEEEEEc-CCcCEECCCCEEEEEe
Confidence 34556788888854 8899999999999985
No 102
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=71.67 E-value=3.6 Score=32.96 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=27.0
Q ss_pred hhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 27 HAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 27 ~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+...-|.|..+.+ +.|+.|++||+|+.+++.
T Consensus 50 i~~~v~G~V~~v~V-~~Gd~VkkGqvLa~Ld~~ 81 (310)
T PRK10559 50 IAPDVSGLITQVNV-HDNQLVKKGQVLFTIDQP 81 (310)
T ss_pred EccCCceEEEEEEe-CCcCEEcCCCEEEEECcH
Confidence 44567789998866 789999999999999883
No 103
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=71.47 E-value=2.9 Score=32.35 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=19.8
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEEEcccc
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVESVKAT 62 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~ 62 (128)
-|.|..| +.+.|+.|++||+|+.|......
T Consensus 9 ~G~V~~i-~V~eG~~VkkGq~L~~LD~~~~~ 38 (305)
T PF00529_consen 9 GGIVTEI-LVKEGQRVKKGQVLARLDPTDYE 38 (305)
T ss_dssp -EEEEEE--S-TTEEE-TTSECEEE--HHHH
T ss_pred CeEEEEE-EccCcCEEeCCCEEEEEEeeccc
Confidence 4677777 45999999999999999876543
No 104
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=69.10 E-value=25 Score=31.12 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=37.1
Q ss_pred cCCCceE-EEEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccc
Q 044104 6 YADSHEW-VKVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKA 61 (128)
Q Consensus 6 y~~~h~W-v~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~ 61 (128)
|...|-. ++.+++ .++|||+....+ |+-... +.+.|++|++||+++++--..-
T Consensus 514 ~~t~Ha~gi~~~~G~eiliHiGidTv~l~--g~gF~~-~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 514 FPTKHAIGIRSDNGIEILIHVGIDTVELN--GEGFEI-LVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred cCCCCEEEEEECCCcEEEEEeccchhccC--CCCeEE-EecCcCEEcCCCEEEEecHHHH
Confidence 4556765 444445 689999876554 554333 3499999999999999966543
No 105
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=69.01 E-value=4.3 Score=33.52 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=25.8
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
..+.-|.|..+.+ +.|+.|++||.|+.|+..
T Consensus 69 ~a~vsG~V~~v~v-~~Gd~VkkGqvLa~ld~~ 99 (397)
T PRK15030 69 RPQVSGIILKRNF-KEGSDIEAGVSLYQIDPA 99 (397)
T ss_pred EecCcEEEEEEEc-CCCCEecCCCEEEEECCH
Confidence 3556788888855 899999999999999864
No 106
>PF13437 HlyD_3: HlyD family secretion protein
Probab=68.93 E-value=4.2 Score=26.74 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=14.4
Q ss_pred eeecCcceEEEEEehhh
Q 044104 64 DVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 64 ~i~sPvsG~V~~vN~~l 80 (128)
.|+||++|.|..+|...
T Consensus 1 ~i~AP~~G~V~~~~~~~ 17 (105)
T PF13437_consen 1 TIRAPFDGVVVSINVQP 17 (105)
T ss_pred CEECCCCEEEEEEeCCC
Confidence 48999999999998644
No 107
>PRK02259 aspartoacylase; Provisional
Probab=68.49 E-value=6.2 Score=31.43 Aligned_cols=59 Identities=15% Similarity=0.035 Sum_probs=43.4
Q ss_pred cChhhhhhcCCeeEEEcCCC--C--cEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcC
Q 044104 24 ITDHAQDHLGDVVYVELPEV--G--VTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSS 83 (128)
Q Consensus 24 it~~a~~~lG~i~~v~lp~~--G--~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~ 83 (128)
..++-...-|.+.-+=-|.+ + +.|++||+++.. .......+.+|-+|..+.+|+...-+
T Consensus 213 ~~~~pr~~~g~~~g~vhp~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pvfine~ay~~ 275 (288)
T PRK02259 213 SIDYPRDENGQIAAMIHPQLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPVFINEAAYYE 275 (288)
T ss_pred ccCCCCCCCCCEeEEechhhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeEEecHHHHHh
Confidence 34555555566654434433 6 669999999988 66778889999999999999886543
No 108
>PF13437 HlyD_3: HlyD family secretion protein
Probab=67.50 E-value=7.6 Score=25.45 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=19.9
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
|-|..+.. ..|+.+.+|++++.|...
T Consensus 8 G~V~~~~~-~~G~~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 8 GVVVSINV-QPGEVVSAGQPLAEIVDT 33 (105)
T ss_pred EEEEEEeC-CCCCEECCCCEEEEEEcc
Confidence 56666655 888888888888888764
No 109
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=67.21 E-value=17 Score=32.47 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=36.6
Q ss_pred cCCCceE-EEEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 6 YADSHEW-VKVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 6 y~~~h~W-v~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
|...|-. ++.+++ .++|||+..-.+ |+-... +.+.||+|++||+++++.-..
T Consensus 530 f~T~HAigi~t~~G~eiLiHiGiDTV~L~--G~gF~~-~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 530 FATLHAIGLESDDGVEVLIHVGIDTVKLD--GKFFTA-HVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred cCCCcEEEEEeCCCcEEEEEechhhhhcC--CCCceE-EecCCCEEcCCCEEEEEcHHH
Confidence 5567766 444555 689999876544 554333 348999999999999996653
No 110
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=65.94 E-value=5.8 Score=28.41 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.4
Q ss_pred hhhhhhcCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 26 DHAQDHLGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 26 ~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
......-|.|..| +.+.|+.|..||+|+.|+
T Consensus 109 eI~A~~~G~V~~I-lv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 109 EIEAPADGVVKEI-LVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred eecCCCCcEEEEE-EecCCCccCCCCEEEEec
Confidence 3445667888888 459999999999999987
No 111
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=65.80 E-value=38 Score=27.98 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=38.6
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEEEcccc-------------------cee----e---cCcceEEEEEehhhhcCCC
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVESVKAT-------------------SDV----N---SPVSGKVVEVNEELSSSPA 85 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~-------------------~~i----~---sPvsG~V~~vN~~l~~~P~ 85 (128)
-|.|..+.+ .+|+.|..|+++++|-..... ..| + -++.|+|..|.......-.
T Consensus 223 dG~V~~~~v-~~G~~V~~g~pl~~Iv~~~~l~V~a~v~E~~l~~v~~Gq~V~I~~da~p~~~~~~G~V~~I~~~~~~~~~ 301 (390)
T PRK15136 223 TGYVSRRSV-QVGAQISPTTPLMAVVPATNLWVDANFKETQLANMRIGQPATITSDIYGDDVVYTGKVVGLDMGTGSAFS 301 (390)
T ss_pred CeEEEEEec-CCCCEeCCCCeEEEEEeCCcEEEEEecCHHHHhcCCCCCEEEEEEecCCCCceEEEEEEEECCccccccc
Confidence 377777655 789999999999888553221 122 2 2479999999755433333
Q ss_pred cccCCCCCCCcE
Q 044104 86 LVNSSPYEDGWI 97 (128)
Q Consensus 86 lln~dpy~~gWl 97 (128)
++....-..+|.
T Consensus 302 ~lp~~~~~g~~~ 313 (390)
T PRK15136 302 LLPAQNATGNWI 313 (390)
T ss_pred CCCCccCCCCeE
Confidence 332222233565
No 112
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=65.47 E-value=38 Score=27.17 Aligned_cols=66 Identities=20% Similarity=0.209 Sum_probs=43.2
Q ss_pred hcCCeeEEEcCCCCcEecCCCeEEEEEEccccc-------------------eee------cCcceEEEEEehhhhc---
Q 044104 31 HLGDVVYVELPEVGVTVKQDASFGAVESVKATS-------------------DVN------SPVSGKVVEVNEELSS--- 82 (128)
Q Consensus 31 ~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~-------------------~i~------sPvsG~V~~vN~~l~~--- 82 (128)
.-|.|..+.+ .+|+.|..|+++++|-...... .|. -.+.|+|..|...+..
T Consensus 215 ~dG~V~~~~~-~~G~~V~~g~~l~~I~~~~~l~v~~~v~e~~~~~v~~Gq~v~i~~~~~~~~~~~G~V~~Is~~~~~~~~ 293 (346)
T PRK10476 215 FDGRVVGLKV-SVGEFAAPMQPIFTLIDTDHWYAIANFRETDLKNIRVGDCATVYSMIDRGRPFEGKVDSIGWGVLPDDG 293 (346)
T ss_pred CCcEEEeeec-CCCCCcCCCCeEEEEecCCCEEEEEEEcHHHHhhCCCCCEEEEEEecCCCceEEEEEEEECCccccccc
Confidence 4477777765 8899999999999986554211 222 2478999999987643
Q ss_pred --CCCcccCCCCCCCcE
Q 044104 83 --SPALVNSSPYEDGWI 97 (128)
Q Consensus 83 --~P~lln~dpy~~gWl 97 (128)
.|..+-..|....|.
T Consensus 294 ~~~~~~~~~~~~~~~~~ 310 (346)
T PRK10476 294 GNVPRGLPYVPRSINWV 310 (346)
T ss_pred ccccccCCCCCCCCceE
Confidence 244444445555565
No 113
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=64.59 E-value=13 Score=30.05 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=35.0
Q ss_pred eEEEEeCC-EEEEecChhhhhhcCC-eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 11 EWVKVDGN-SATIGITDHAQDHLGD-VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 11 ~Wv~~~~~-~~~vGit~~a~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.|+..+++ .+=+.+-....+++|. +......+.|+++++|+.++.+++.
T Consensus 38 ~i~ake~GvvaG~~~a~~~f~~l~~~i~~~~~~~DG~~v~~g~~i~~~~G~ 88 (280)
T COG0157 38 VIIAKEAGVVAGLDVAEEVFELLGPSIEIQWLVKDGDRVKPGDVLAEIEGP 88 (280)
T ss_pred EEEEcCCcEEEcHHHHHHHHHHhCCceEEEEEcCCCCEeCCCCEEEEEecc
Confidence 46666666 3444555666788883 3333456899999999999999986
No 114
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=63.75 E-value=8.4 Score=24.23 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=21.3
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEE
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAV 56 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~i 56 (128)
...-|.|..+ +.+.|+.|..|++|+.|
T Consensus 48 a~~~G~i~~i-~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 48 APVSGIIKEI-LVEEGDTVEVGQVLAII 74 (74)
T ss_dssp BSSSEEEEEE-SSTTTEEEETTSEEEEE
T ss_pred CCCCEEEEEE-EECCCCEECCCCEEEEC
Confidence 3446777776 55889999999999986
No 115
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=62.95 E-value=7.5 Score=31.04 Aligned_cols=36 Identities=14% Similarity=0.195 Sum_probs=28.8
Q ss_pred ecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 23 GITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 23 Git~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
...+...+.-|.|..+. .+.|+.|++||+|+.|++.
T Consensus 42 ~~i~v~a~~~G~V~~i~-v~~Gd~V~kG~~L~~ld~~ 77 (331)
T PRK03598 42 RTVNLGFRVGGRLASLA-VDEGDAVKAGQVLGELDAA 77 (331)
T ss_pred EEEEeecccCcEEEEEE-cCCCCEEcCCCEEEEEChH
Confidence 33345567778888885 4999999999999999875
No 116
>PRK06748 hypothetical protein; Validated
Probab=61.99 E-value=12 Score=24.71 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=26.1
Q ss_pred hhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 26 DHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 26 ~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-...-|.|..+. .+.|+.+..|++|+.|+..
T Consensus 44 ei~Ap~~G~v~~i~-v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 44 EIKVGISGYIESLE-VVEGQAIADQKLLITVRDD 76 (83)
T ss_pred EEecCCCEEEEEEE-eCCCCEECCCCEEEEEECC
Confidence 33455678888884 5899999999999999754
No 117
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=61.96 E-value=6.7 Score=30.59 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=19.5
Q ss_pred hhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 27 HAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 27 ~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.....-|.| .+. .+.|++|++|++|+++.+.
T Consensus 24 v~~~~~G~v-~~~-v~~G~~V~kG~~L~~ld~~ 54 (328)
T PF12700_consen 24 VSAPVSGRV-SVN-VKEGDKVKKGQVLAELDSS 54 (328)
T ss_dssp E--SS-EEE-EE--S-TTSEEETT-EEEEEE-H
T ss_pred EECCCCEEE-EEE-eCCcCEECCCCEEEEEECh
Confidence 334455777 564 4889999999999999875
No 118
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=60.08 E-value=7.4 Score=31.56 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=27.3
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEcccc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKAT 62 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~ 62 (128)
...-|.|..+.+ ..|+.|++|++++.++.....
T Consensus 48 ~~~~G~v~~i~V-~eG~~V~kG~~L~~ld~~~~~ 80 (423)
T TIGR01843 48 HLEGGIVREILV-REGDRVKAGQVLVELDATDVE 80 (423)
T ss_pred cCCCcEEEEEEe-CCCCEecCCCeEEEEccchhh
Confidence 446699988855 999999999999999987643
No 119
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=59.82 E-value=28 Score=22.60 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=25.0
Q ss_pred CEEEEecChhh--hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 18 NSATIGITDHA--QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 18 ~~~~vGit~~a--~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+-+.-|+.-.. .+.+ .+..--+.+.|+.+.+|++++.+++.
T Consensus 27 ~gV~aG~~~~~~i~~~l-~~~v~~~~~dG~~v~~g~~i~~i~G~ 69 (88)
T PF02749_consen 27 DGVLAGLEEAEEIFEKL-GLEVEWLVKDGDRVEPGDVILEIEGP 69 (88)
T ss_dssp SEEE-SHHHHHHHHHHC-TEEEEESS-TT-EEETTCEEEEEEEE
T ss_pred CEEEECHHHHHHHHhhc-cEEEEEEeCCCCCccCCcEEEEEEeC
Confidence 33444665433 4445 44333346899999999999999985
No 120
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=59.39 E-value=8.8 Score=31.85 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=29.7
Q ss_pred ecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccc
Q 044104 23 GITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKA 61 (128)
Q Consensus 23 Git~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~ 61 (128)
++.......-|.|..+ +...|+.|++|++|+.|+....
T Consensus 57 ~~~~v~a~~~G~V~~i-~V~eG~~V~kGq~L~~l~~~~~ 94 (421)
T TIGR03794 57 GVDTIQSPGSGVVIDL-DVEVGDQVKKGQVVARLFQPEL 94 (421)
T ss_pred ceeEEECCCCeEEEEE-ECCCcCEECCCCEEEEECcHHH
Confidence 4445556677888888 4589999999999999988644
No 121
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=57.26 E-value=13 Score=30.78 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=32.2
Q ss_pred EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.++-=++..+-+.-|.|..|.. ..++.|++||+|++|...
T Consensus 48 yv~~~vv~Iap~VsG~V~eV~V-~dnq~Vk~Gd~L~~iD~~ 87 (352)
T COG1566 48 YVRADVVPIAPQVSGRVTEVNV-KDNQLVKKGDVLFRIDPR 87 (352)
T ss_pred EEEEEEEEEcCcCceEEEEEEe-cCCCEecCCCeEEEECcH
Confidence 5555566667788899999966 788999999999999654
No 122
>PRK09907 toxin MazF; Provisional
Probab=56.15 E-value=19 Score=24.60 Aligned_cols=28 Identities=18% Similarity=0.439 Sum_probs=24.9
Q ss_pred cCCeeEEEc-CCCCcEecCCCeEEEEEEc
Q 044104 32 LGDVVYVEL-PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 32 lG~i~~v~l-p~~G~~v~~g~~l~~iEs~ 59 (128)
=|+|+.++| |..|.+..+-.|+.+|-..
T Consensus 9 rGdI~~vdl~P~~G~E~~g~RP~lVvs~d 37 (111)
T PRK09907 9 MGDLIWVDFDPTKGSEQAGHRPAVVLSPF 37 (111)
T ss_pred CCcEEEEECCCCCCcccCCCCeEEEEcch
Confidence 489999999 9999999999999998764
No 123
>PRK02597 rpoC2 DNA-directed RNA polymerase subunit beta'; Provisional
Probab=54.32 E-value=20 Score=34.81 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=44.0
Q ss_pred eEEEEeCCEEEEecChhh--hhh---cCCeeEEEcCCCCcEecCCCeEEEEEEcc-------ccceeecCcceEEEEEeh
Q 044104 11 EWVKVDGNSATIGITDHA--QDH---LGDVVYVELPEVGVTVKQDASFGAVESVK-------ATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 11 ~Wv~~~~~~~~vGit~~a--~~~---lG~i~~v~lp~~G~~v~~g~~l~~iEs~k-------~~~~i~sPvsG~V~~vN~ 78 (128)
-|+...++.++|.=.+.+ +.. .|.+.+ .+.|+.|+++|.++.+-+.. ..-.|+||++|+|-.-+.
T Consensus 375 a~~~~~~~~~~i~~~~~~~~~~~~ip~~s~l~---v~~~q~v~~~q~iae~~~~~~~~~~e~~~K~IySdlsGEI~fst~ 451 (1331)
T PRK02597 375 ALQAEVDFDLVLKPSGKGKPQKIEITQGSLLF---VDDGQTVEADQLLAEVAAGAVKKSTEKATKDVICDLAGEVRFADL 451 (1331)
T ss_pred EEEEeeccEEEEEeCCCCceEEEEeCCCCEEE---EECCcEEecCcEEEEeecCCcccceeEEEEEEecCCceEEEECCC
Confidence 666666666666533321 111 133333 38899999999999998742 345899999999988765
Q ss_pred h
Q 044104 79 E 79 (128)
Q Consensus 79 ~ 79 (128)
-
T Consensus 452 V 452 (1331)
T PRK02597 452 I 452 (1331)
T ss_pred c
Confidence 3
No 124
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=51.30 E-value=41 Score=30.26 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=35.1
Q ss_pred cCCCceE-EEEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 6 YADSHEW-VKVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 6 y~~~h~W-v~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
|...|-- ++.+++ .+.||++....+ |+=... +.+.|++|++||+++++--..
T Consensus 550 ~~T~HA~gi~t~~G~eiLIHiGidTV~l~--G~gF~~-~Vk~Gd~V~~G~~l~~~D~~~ 605 (648)
T PRK10255 550 FNTNHAFCLETEKGAEIVVHMGIDTVALE--GKGFKR-LVEEGAQVSAGQPILEMDLDY 605 (648)
T ss_pred cCCCcEEEEEcCCCCEEEEEeccchhccC--CCCceE-EecCCCEEcCCCEEEEEcHHH
Confidence 4456754 344444 689999776544 443333 349999999999999986654
No 125
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=50.00 E-value=20 Score=26.66 Aligned_cols=15 Identities=20% Similarity=0.470 Sum_probs=13.4
Q ss_pred ceeecCcceEEEEEe
Q 044104 63 SDVNSPVSGKVVEVN 77 (128)
Q Consensus 63 ~~i~sPvsG~V~~vN 77 (128)
..++||++|+|..+-
T Consensus 58 ~~v~AP~dG~V~~vf 72 (169)
T PRK09439 58 NKMVAPVDGTIGKIF 72 (169)
T ss_pred CEEEecCCeEEEEEc
Confidence 579999999999985
No 126
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=48.36 E-value=18 Score=26.32 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=24.5
Q ss_pred hhhhhhcCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 26 DHAQDHLGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 26 ~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
......-|.|..+ +.+.|+.|..|++|+.|+
T Consensus 126 eI~A~~~G~v~~i-~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 126 EIEAEVAGKVVEI-LVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEecCCCcEEEEE-EeCCCCEECCCCEEEEEC
Confidence 3445567888888 458999999999999885
No 127
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=46.57 E-value=23 Score=29.79 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=24.5
Q ss_pred hhhhhc-CCeeEEEcCCCCcEecCCCeEEEEEEccc
Q 044104 27 HAQDHL-GDVVYVELPEVGVTVKQDASFGAVESVKA 61 (128)
Q Consensus 27 ~a~~~l-G~i~~v~lp~~G~~v~~g~~l~~iEs~k~ 61 (128)
..+... |.|..| +.+.|+.|++||+|+.+.....
T Consensus 61 ~vq~~~~G~v~~i-~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 61 KIQSTSNNAIKEN-YLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred EEEcCCCcEEEEE-EcCCCCEecCCCEEEEECchHH
Confidence 344444 444445 4599999999999999987643
No 128
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=46.03 E-value=20 Score=26.11 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=24.0
Q ss_pred hhhhhhcCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 26 DHAQDHLGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 26 ~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
+.....-|.|..+ +.+.|+.|..|++|+.|+
T Consensus 125 eI~a~~~G~i~~i-~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 125 EIEADKSGVVTEI-LVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEecCCCeEEEEE-EcCCCCEeCCCCEEEEeC
Confidence 3345556888877 458999999999999874
No 129
>PRK09812 toxin ChpB; Provisional
Probab=45.59 E-value=28 Score=24.00 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=23.1
Q ss_pred cCCeeEEEc-CCCCcEecCC-CeEEEEEEc
Q 044104 32 LGDVVYVEL-PEVGVTVKQD-ASFGAVESV 59 (128)
Q Consensus 32 lG~i~~v~l-p~~G~~v~~g-~~l~~iEs~ 59 (128)
=|+|+.++| |..|.+.+.+ .|+.+|-+.
T Consensus 9 rGdI~~v~l~P~~G~E~~gk~RP~vVvS~d 38 (116)
T PRK09812 9 RGDIVLVGFDPASGHEQQGAGRPALVLSVA 38 (116)
T ss_pred CCcEEEEECCCCCccccCCCcCeEEEEccc
Confidence 589999999 8899998655 888888763
No 130
>PF02452 PemK: PemK-like protein; InterPro: IPR003477 PemK is a growth inhibitor in Escherichia coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. It is responsible for mediating cell death through inhibiting protein synthesis through the cleavage of single-stranded RNA. PemK is part of the PemK-PemI system, where PemI is an antitoxin that inhibits the action of the PemK toxin []. PemK homologues have been found in a wide range of bacteria, which together form an endonuclease family that interfere with mRNA function. This family consists of the PemK protein in addition to ChpA, ChpB, Kid and MazF.; GO: 0003677 DNA binding; PDB: 1M1F_A 2C06_A 3NFC_F 1UB4_B 1NE8_A.
Probab=45.25 E-value=12 Score=24.40 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=16.5
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
|+|+.+++|..|.+..+..|+.+|-..
T Consensus 3 GdI~~v~~p~~~~e~~k~RP~vVls~~ 29 (110)
T PF02452_consen 3 GDIVWVDFPDFGSEMGKRRPAVVLSNN 29 (110)
T ss_dssp TEEEEEE-S--TTS--SEEEEEE-S-H
T ss_pred ceEEEEECCCCCcccCCcccEEEEEee
Confidence 899999999778887777777777554
No 131
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=44.21 E-value=19 Score=28.55 Aligned_cols=19 Identities=21% Similarity=0.583 Sum_probs=15.9
Q ss_pred ceeecCcceEEEEEehhhh
Q 044104 63 SDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 63 ~~i~sPvsG~V~~vN~~l~ 81 (128)
..|+||++|.|..++....
T Consensus 205 ~~i~AP~dG~V~~~~~~~G 223 (327)
T TIGR02971 205 TYVKAPIDGRVLKIHAREG 223 (327)
T ss_pred CEEECCCCeEEEEEecCCC
Confidence 3799999999999986544
No 132
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=44.14 E-value=41 Score=25.18 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=34.7
Q ss_pred EEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcc
Q 044104 21 TIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVS 70 (128)
Q Consensus 21 ~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvs 70 (128)
.+.+...+.-..|.|..---+..|+.+++||.++.++- .....+.-|-+
T Consensus 133 ~v~~v~Vga~~v~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~ 181 (202)
T PF02666_consen 133 KVAVVQVGALLVGSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKD 181 (202)
T ss_pred EEEEEEeccceeceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCC
Confidence 56666666777777775533468999999999999998 44445554443
No 133
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=43.57 E-value=20 Score=27.24 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=15.3
Q ss_pred eeecCcceEEEEEehhhh
Q 044104 64 DVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 64 ~i~sPvsG~V~~vN~~l~ 81 (128)
.|+||++|.|..+|....
T Consensus 90 ~i~AP~dG~V~~~~~~~G 107 (265)
T TIGR00999 90 EVRSPFDGYITQKSVTLG 107 (265)
T ss_pred EEECCCCeEEEEEEcCCC
Confidence 579999999999987654
No 134
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=42.86 E-value=20 Score=28.72 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.3
Q ss_pred cceeecCcceEEEEEehhhhc
Q 044104 62 TSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 62 ~~~i~sPvsG~V~~vN~~l~~ 82 (128)
-..|+||++|+|..+|....+
T Consensus 154 ~~~I~AP~dGvV~~~~~~~G~ 174 (310)
T PRK10559 154 RTVIRAPADGWVTNLNVYTGE 174 (310)
T ss_pred CCEEECCCCeEEEeEecCCCC
Confidence 357999999999999876554
No 135
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=41.32 E-value=33 Score=24.45 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=21.1
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEE
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAV 56 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~i 56 (128)
..-|.|..+.. ..|+.++.|++|+.|
T Consensus 104 p~~G~V~~i~v-~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 104 SSAGTVTAIHV-TPGQVVNPGDGLITI 129 (130)
T ss_pred CCCeEEEEEEe-CCCCEeCCCCEEEEe
Confidence 35688877754 889999999999886
No 136
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=41.05 E-value=26 Score=26.89 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=24.5
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEE
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVES 58 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs 58 (128)
....|.|..+.+ ..|+.|++|+.|+.++.
T Consensus 71 ~~~~G~v~~i~v-~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 71 ARVAGIVAEILV-KEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccccEEEEEEc-cCCCeecCCCEEEEECC
Confidence 336778887755 99999999999999998
No 137
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=40.93 E-value=52 Score=27.60 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=30.6
Q ss_pred cCCCCcEecCCCeEEEEEEc-cccceeecCc--ceEEEEEe
Q 044104 40 LPEVGVTVKQDASFGAVESV-KATSDVNSPV--SGKVVEVN 77 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~-k~~~~i~sPv--sG~V~~vN 77 (128)
..++|+.|..||.+++|.-. --.+.|..|. .|+|..+-
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~~ 94 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYIA 94 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEEe
Confidence 35899999999999999543 3577887776 79999883
No 138
>PRK00723 phosphatidylserine decarboxylase; Provisional
Probab=40.20 E-value=95 Score=25.03 Aligned_cols=30 Identities=13% Similarity=-0.030 Sum_probs=22.2
Q ss_pred ecCCCeEEEEEEccccceeecCcceEEEEE
Q 044104 47 VKQDASFGAVESVKATSDVNSPVSGKVVEV 76 (128)
Q Consensus 47 v~~g~~l~~iEs~k~~~~i~sPvsG~V~~v 76 (128)
...|.-+..-=+....+.++||++|+|.+.
T Consensus 150 f~~G~~~~~yLsp~DYHR~HsPv~G~v~~~ 179 (297)
T PRK00723 150 YAGGTCLILRLCPTDYHRFHFPDSGICEET 179 (297)
T ss_pred cCCCEEEEEEECCCeEEEEEccCCcEEEEE
Confidence 334444444467788999999999999985
No 139
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=39.97 E-value=42 Score=25.07 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=23.9
Q ss_pred cCCCCcEecCCCeEEEEEEccccceeecCcc
Q 044104 40 LPEVGVTVKQDASFGAVESVKATSDVNSPVS 70 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvs 70 (128)
.+..|+.+++|+.++.++-+ ....++.|-+
T Consensus 135 ~~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~ 164 (189)
T TIGR00164 135 YVKEGEKVSRGQRIGMIRFG-SRVDLYLPEN 164 (189)
T ss_pred ecCCCCEEecCcEEEEEecC-CeEEEEEcCC
Confidence 45789999999999999998 4455666754
No 140
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=38.24 E-value=25 Score=29.39 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=25.8
Q ss_pred CEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 18 NSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 18 ~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
..++|++ +-+..++ |+|..|+.+.+|+|+++|-+.
T Consensus 320 ~~v~v~~------l~~~~~~-DiP~~GtviekgePl~sviA~ 354 (389)
T COG2232 320 RTVRVPI------LKLSWTH-DIPRPGTVIEKGEPLCSVIAS 354 (389)
T ss_pred ceeeccc------ccccccc-cCCCCCcccCCCCceeeeeec
Confidence 3566662 2234444 899999999999999999764
No 141
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=37.84 E-value=33 Score=22.09 Aligned_cols=20 Identities=30% Similarity=0.371 Sum_probs=15.3
Q ss_pred CCCCcEecCCCeEEEEEEcc
Q 044104 41 PEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k 60 (128)
...|+.|++|+.|+.+-...
T Consensus 57 v~~G~~V~~G~~IG~~g~~~ 76 (96)
T PF01551_consen 57 VKVGDRVKAGQVIGTVGNTG 76 (96)
T ss_dssp S-TTSEE-TTCEEEEEBSCS
T ss_pred ceecccccCCCEEEecCCCC
Confidence 57999999999999997543
No 142
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=37.75 E-value=42 Score=26.37 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=25.7
Q ss_pred CCCCcEecC-CCeEEEEEEccccceeecCcceEEEEE
Q 044104 41 PEVGVTVKQ-DASFGAVESVKATSDVNSPVSGKVVEV 76 (128)
Q Consensus 41 p~~G~~v~~-g~~l~~iEs~k~~~~i~sPvsG~V~~v 76 (128)
...|+.+.+ |+.|+..- ..++++|.+|.|+-.
T Consensus 226 ~~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl~~ 258 (272)
T cd06910 226 FRGGETIPRAGTVIAHDG----GEPIRTPYDDCVLIM 258 (272)
T ss_pred cCCcceeccCCcEEEEeC----CeEEeCCCCCEEEEc
Confidence 366899999 99999942 489999999988654
No 143
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.70 E-value=43 Score=27.09 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=18.5
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEEE
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVES 58 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iEs 58 (128)
-|.|..+....+|+.|..|+++++|-.
T Consensus 279 dG~V~~~~~~~~G~~v~~g~~l~~i~~ 305 (423)
T TIGR01843 279 DGTVQSLKVHTVGGVVQPGETLMEIVP 305 (423)
T ss_pred CcEEEEEEEEccCceecCCCeeEEEec
Confidence 366666655467778888888877754
No 144
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=37.70 E-value=54 Score=25.91 Aligned_cols=40 Identities=23% Similarity=0.200 Sum_probs=27.7
Q ss_pred EEEEecChhh--hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDHA--QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~a--~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+.-|+.... .+.+| +....+.+.|+.+++|++++.+++.
T Consensus 37 ~v~~G~~~~~~i~~~~~-~~v~~~~~dG~~v~~g~~i~~i~G~ 78 (265)
T TIGR00078 37 GVLAGLPVARRVFEQLG-VQVEWLVKDGDRVEPGEVVAEVEGP 78 (265)
T ss_pred EEEECHHHHHHHHHHcC-eEEEEEeCCCCEecCCCEEEEEEEc
Confidence 3445554432 45555 4433457999999999999999996
No 145
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=36.95 E-value=26 Score=28.91 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.5
Q ss_pred cceeecCcceEEEEEehhhhc
Q 044104 62 TSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 62 ~~~i~sPvsG~V~~vN~~l~~ 82 (128)
-..|+||++|.|..++-...+
T Consensus 173 ~t~I~APfdG~V~~~~v~~G~ 193 (397)
T PRK15030 173 YTKVTSPISGRIGKSNVTEGA 193 (397)
T ss_pred CCEEEcCCCeEEeeeecCCCC
Confidence 357999999999999877654
No 146
>KOG1775 consensus U6 snRNA-associated Sm-like protein [RNA processing and modification]
Probab=35.90 E-value=49 Score=21.71 Aligned_cols=44 Identities=20% Similarity=0.349 Sum_probs=35.5
Q ss_pred CceEEEEeCC----EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCe
Q 044104 9 SHEWVKVDGN----SATIGITDHAQDHLGDVVYVELPEVGVTVKQDAS 52 (128)
Q Consensus 9 ~h~Wv~~~~~----~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~ 52 (128)
...||-..++ -..+|+++|.--.+-+++..+.-..|.++.+-+.
T Consensus 18 ski~iimksdkE~~GtL~GFDd~VNmvLeDvtEye~~~egr~~tk~~~ 65 (84)
T KOG1775|consen 18 SKIWIIMKSDKEFVGTLVGFDDFVNMVLEDVTEYEITPEGRRMTKLDQ 65 (84)
T ss_pred ceEEEEEccCceeeeEEechHHHHHHHHHhhhheeeCCCcceeeeeee
Confidence 4589987655 3578999999999999999998888877777554
No 147
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=35.89 E-value=50 Score=26.01 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=36.1
Q ss_pred eEEEEeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCc
Q 044104 11 EWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPV 69 (128)
Q Consensus 11 ~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPv 69 (128)
..+..+.+...+.+...+.-..|.|... ..|+.+++||.++.++-+ ....+.-|-
T Consensus 180 ~v~~i~~~~G~v~~v~Vga~~Vg~I~~~---~~g~~v~kGee~G~F~fG-Stvvllf~~ 234 (259)
T PRK03140 180 SVTEVNSDGEHMALVKVGAMFVNSIELT---HERDTVQKGEEMAYFSFG-STVVLLFEK 234 (259)
T ss_pred EEEEEEeCCceEEEEEEeeEEeeEEEEe---cCCCEEecCcEeeeeccC-CeEEEEEeC
Confidence 3333433333455555666666777743 569999999999999998 555555554
No 148
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=35.45 E-value=25 Score=28.00 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=15.9
Q ss_pred cceeecCcceEEEEEehhhh
Q 044104 62 TSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 62 ~~~i~sPvsG~V~~vN~~l~ 81 (128)
-..|+||++|.|..++....
T Consensus 203 ~~~I~AP~dG~V~~~~~~~G 222 (331)
T PRK03598 203 DTELIAPSDGTILTRAVEPG 222 (331)
T ss_pred cCEEECCCCeEEEeccCCCC
Confidence 35899999999998875543
No 149
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=34.99 E-value=24 Score=26.75 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=8.4
Q ss_pred CcEecCCCeEEEEEE
Q 044104 44 GVTVKQDASFGAVES 58 (128)
Q Consensus 44 G~~v~~g~~l~~iEs 58 (128)
|+.|++|+.|+.+++
T Consensus 1 G~~VkkG~~L~~ld~ 15 (265)
T TIGR00999 1 GDPVKKGQVLAVVDS 15 (265)
T ss_pred CCcccCCCEEEEEcc
Confidence 455555555555554
No 150
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.48 E-value=81 Score=25.40 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=27.6
Q ss_pred EEEecC--hhhhhhcC-CeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGIT--DHAQDHLG-DVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit--~~a~~~lG-~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+. ....+.+| ++.+--+.+.|+.+++|++++.+++.
T Consensus 54 v~~G~~~a~~i~~~~~~~~~~~~~~~dG~~v~~g~~i~~~~G~ 96 (288)
T PRK07428 54 VIAGLPIAARVFQLLDPQVSFTPLVAEGAACESGQVVAEIEGP 96 (288)
T ss_pred EEECHHHHHHHHHHcCCcEEEEEEcCCCCEecCCCEEEEEEEc
Confidence 334543 34456666 34433456899999999999999986
No 151
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=34.29 E-value=67 Score=25.86 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=23.3
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+.+| +..--+...|+.+++|+.++.+++.
T Consensus 56 f~~l~-~~v~~~~~dG~~v~~G~~i~~~~G~ 85 (284)
T PRK06096 56 LTTLG-LTIDDAVSDGSQANAGQRLISAQGN 85 (284)
T ss_pred HHHcC-CEEEEEeCCCCEeCCCCEEEEEEeC
Confidence 55666 4333346899999999999999985
No 152
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.28 E-value=75 Score=25.40 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=27.0
Q ss_pred EEEec--ChhhhhhcCC-eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGI--TDHAQDHLGD-VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGi--t~~a~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+ -....+.+|. +..--+...|+.+++|++++.+++.
T Consensus 46 v~~G~~~a~~i~~~~~~~~~v~~~~~dG~~v~~g~~i~~~~G~ 88 (277)
T PRK08072 46 VFAGRLVIEEGYKLLDERIEVELHKKDGDLVKKGEIIATVQGP 88 (277)
T ss_pred EEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEEEEEEC
Confidence 33454 2333455553 4333456899999999999999986
No 153
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.27 E-value=70 Score=25.52 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=26.6
Q ss_pred EEEecChh--hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDH--AQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~--a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+... ..+.+| +...-+.+.|+.+++|++++++++.
T Consensus 42 v~~G~~~a~~i~~~l~-~~~~~~~~dG~~v~~g~~i~~i~G~ 82 (273)
T PRK05848 42 VFSGEKYALELLEMTG-IECVFTIKDGERFKKGDILMEIEGD 82 (273)
T ss_pred EEECHHHHHHHHHHcC-CEEEEEcCCCCEecCCCEEEEEEEC
Confidence 33454433 244555 4333457899999999999999996
No 154
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=34.21 E-value=51 Score=24.07 Aligned_cols=27 Identities=19% Similarity=0.083 Sum_probs=21.7
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEE
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAV 56 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~i 56 (128)
...-|.|..+. ...|+.+..|++|+.|
T Consensus 126 Ap~~G~V~~i~-v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 126 APKDGVVKKIL-VKEGDTVDTGQPLIEL 152 (153)
T ss_pred cCCCeEEEEEE-cCCCCEECCCCEEEEe
Confidence 44567887774 5899999999999886
No 155
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.78 E-value=1.4e+02 Score=24.03 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=30.4
Q ss_pred EEEEecC--hhhhhhcCC-eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGIT--DHAQDHLGD-VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit--~~a~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
-+.-|+. ....+.+|. +..--+.+.|+.+++|++++.+++.
T Consensus 51 gv~aG~~~a~~vf~~~~~~~~~~~~~~dG~~v~~g~~i~~i~G~ 94 (281)
T PRK06106 51 GVIAGLDLARLAFRLVDPEIEMRRHLPDGAAVAPGDVIATISGP 94 (281)
T ss_pred eEEECHHHHHHHHHHhCCceEEEEEeCCCCEEcCCCEEEEEEEC
Confidence 4555666 555677774 4444456899999999999999985
No 156
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=33.42 E-value=71 Score=25.59 Aligned_cols=33 Identities=9% Similarity=-0.015 Sum_probs=24.9
Q ss_pred hhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 26 DHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 26 ~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
....+.+| +..--+...|+.+++|+.++.+++.
T Consensus 52 ~~i~~~l~-~~~~~~~~dG~~v~~g~~i~~~~G~ 84 (277)
T TIGR01334 52 AKLLKQLG-ASIDYAVPSGSRALAGTLLLEAKGS 84 (277)
T ss_pred HHHHHHcC-CEEEEEeCCCCEeCCCCEEEEEEec
Confidence 33456666 4433457899999999999999986
No 157
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.37 E-value=68 Score=25.70 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=22.9
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+.+| +....+...|+.+++|++++++++.
T Consensus 53 ~~~l~-~~v~~~~~dG~~v~~g~~i~~i~G~ 82 (278)
T PRK08385 53 FEHFG-VKVEVRKRDGEEVKAGEVILELKGN 82 (278)
T ss_pred HHHcC-CEEEEEcCCCCEecCCCEEEEEEEC
Confidence 45555 3333347899999999999999996
No 158
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=33.30 E-value=44 Score=26.92 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=22.8
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
...-|.|..+. ...|+.|..|++|+.|+
T Consensus 246 AP~sGtV~eIl-VkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 246 ADQSGTIVEIL-AEDGKPVSVDTPLFVIE 273 (274)
T ss_pred cCCCeEEEEEe-cCCCCEeCCCCEEEEec
Confidence 44568888774 58999999999999985
No 159
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=33.07 E-value=37 Score=28.77 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=17.3
Q ss_pred CCCCcEecCCCeEEEEEEc
Q 044104 41 PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~ 59 (128)
.+.|++|++||+|++|-+.
T Consensus 380 ~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 380 KKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred cCCcCEeCCCCeEEEEeCC
Confidence 6899999999999999864
No 160
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=32.82 E-value=90 Score=25.34 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=28.8
Q ss_pred EEEEec--ChhhhhhcCC-eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGI--TDHAQDHLGD-VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGi--t~~a~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+.-|+ -....+.+|. +..--+.+.|+.+++|++++.+++.
T Consensus 66 gi~aG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~G~~i~~i~G~ 109 (296)
T PRK09016 66 GVFCGKRWVEEVFIQLGDDVTIEWHVDDGDVITANQTLFELTGP 109 (296)
T ss_pred EEEECHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEEEEEEEC
Confidence 344564 3334566674 4443457999999999999999996
No 161
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=32.56 E-value=86 Score=25.07 Aligned_cols=40 Identities=15% Similarity=-0.006 Sum_probs=27.7
Q ss_pred EEEecChh--hhhhcC-CeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDH--AQDHLG-DVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~--a~~~lG-~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+... ..+.+| ++..--+.+.|+.+++|++++++++.
T Consensus 48 i~~G~~~~~~i~~~~~~~~~~~~~~~dG~~v~~g~~i~~i~G~ 90 (277)
T PRK05742 48 VIAGTAWVDAVFRQLDPRVAVHWQVADGERVSANQVLFHLEGP 90 (277)
T ss_pred EEECHHHHHHHHHHcCCceEEEEEeCCCCEEcCCCEEEEEEEc
Confidence 34455443 245555 34444457999999999999999986
No 162
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=32.48 E-value=88 Score=23.63 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=23.8
Q ss_pred CCCCcEecCCCeEEEEEEccccceeecCcc
Q 044104 41 PEVGVTVKQDASFGAVESVKATSDVNSPVS 70 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k~~~~i~sPvs 70 (128)
...|+.+++||.++.++-+ ...+++.|-+
T Consensus 156 ~~~g~~v~kGe~~G~f~fG-StV~l~~p~~ 184 (206)
T PRK05305 156 VKEGDEVERGERFGLIRFG-SRVDVYLPLG 184 (206)
T ss_pred CCCCCEEccCcEEeEEecC-CeEEEEEcCC
Confidence 4789999999999999998 4556777765
No 163
>KOG3748 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.44 E-value=1.2e+02 Score=25.09 Aligned_cols=72 Identities=28% Similarity=0.430 Sum_probs=43.9
Q ss_pred hhhcCCeeEEEcCCCCcE-ecCCCe-EEEEEEccccc-----------eeecCcceEEEEEehhhhcCC--------Ccc
Q 044104 29 QDHLGDVVYVELPEVGVT-VKQDAS-FGAVESVKATS-----------DVNSPVSGKVVEVNEELSSSP--------ALV 87 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~-v~~g~~-l~~iEs~k~~~-----------~i~sPvsG~V~~vN~~l~~~P--------~ll 87 (128)
|++-|++.| +|+.|.+ +.-++. -.+|--+..+. ++.--++|+|--.|..|..-| ++-
T Consensus 304 qkisgkvhf--lpkkgmenvdldensgvsiylmdkvqdidspkiknslevfigfdgkikitngqlknlpyyetksvgqlp 381 (477)
T KOG3748|consen 304 QKISGKVHF--LPKKGMENVDLDENSGVSIYLMDKVQDIDSPKIKNSLEVFIGFDGKIKITNGQLKNLPYYETKSVGQLP 381 (477)
T ss_pred hcccceEee--cccccccccCcccCCCeeEEEeecccccCCccccccEEEEEeccceEEeccccccCCCcccccccccCC
Confidence 677788877 4666653 222222 12222223333 444557999999999887766 455
Q ss_pred cCCCCC-----CCcEEEEEE
Q 044104 88 NSSPYE-----DGWIIKVEM 102 (128)
Q Consensus 88 n~dpy~-----~gWl~~i~~ 102 (128)
.+|+|| -||-+++..
T Consensus 382 dsdcygfevtdmgwrvklda 401 (477)
T KOG3748|consen 382 DSDCYGFEVTDMGWRVKLDA 401 (477)
T ss_pred CccccceEeecceeEEEehh
Confidence 678884 589887753
No 164
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=30.81 E-value=42 Score=28.74 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=17.2
Q ss_pred CCCCcEecCCCeEEEEEEc
Q 044104 41 PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~ 59 (128)
.+.|++|++||+|++|-+.
T Consensus 387 ~k~G~~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 387 ARLGDRVDAGEPLATLHAD 405 (440)
T ss_pred cCCcCEECCCCeEEEEeCC
Confidence 6899999999999999854
No 165
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=30.52 E-value=90 Score=24.73 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=27.2
Q ss_pred EEEEecChh--hhhhcCCeeEEE-cCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDH--AQDHLGDVVYVE-LPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~--a~~~lG~i~~v~-lp~~G~~v~~g~~l~~iEs~ 59 (128)
-+.-|+... ..+.+| ..++ +.+.|+.+++|++++.+++.
T Consensus 39 gv~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~i~~i~G~ 80 (272)
T cd01573 39 GVLCGTEEAARILELLG--LEVDLAAASGSRVAAGAVLLEAEGP 80 (272)
T ss_pred EEEECHHHHHHHHHHcC--cEEEEEcCCCCEecCCCEEEEEEEc
Confidence 344555433 245555 3444 56899999999999999996
No 166
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=30.48 E-value=1.1e+02 Score=25.53 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=36.4
Q ss_pred EEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc-cccceeecCcceEEEEEe
Q 044104 20 ATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV-KATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 20 ~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~-k~~~~i~sPvsG~V~~vN 77 (128)
.+|-|++..++.+| |... ....++.-..=...++|+.. .....|.++++|.|.+++
T Consensus 82 ~~v~i~~~~~~~~g-V~t~-~v~~~~~~~~~~~~G~v~~~~~~~~~v~arv~G~V~~l~ 138 (409)
T PRK09783 82 GGVRIDPTQTQNLG-VKTA-TVTRGPLTFAQTFPANVSYNEYQYAIVQARAAGFIDKVY 138 (409)
T ss_pred CeEEECHHHHHhcC-cEEE-EEEEeeccceEEEeEEEEECCCceEEEeCCcCEEEEEEE
Confidence 46888999999998 3222 22222221122345677653 356789999999999997
No 167
>PRK04350 thymidine phosphorylase; Provisional
Probab=29.54 E-value=45 Score=28.99 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=17.2
Q ss_pred CCCCcEecCCCeEEEEEEc
Q 044104 41 PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~ 59 (128)
.+.|++|++||||++|-+.
T Consensus 445 ~k~Gd~V~~G~~l~~i~a~ 463 (490)
T PRK04350 445 VKVGDKVKKGDPLYTIHAE 463 (490)
T ss_pred ccCCCEecCCCeEEEEecC
Confidence 6899999999999999854
No 168
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=29.33 E-value=47 Score=28.49 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=17.2
Q ss_pred CCCCcEecCCCeEEEEEEc
Q 044104 41 PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~ 59 (128)
.++|++|++||+|++|-+.
T Consensus 386 ~k~Gd~V~~Gd~l~~i~~~ 404 (437)
T TIGR02643 386 LPLGDRVEKGEPLAVVHAA 404 (437)
T ss_pred cCCcCEeCCCCeEEEEECC
Confidence 6899999999999999853
No 169
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=29.27 E-value=1.3e+02 Score=24.98 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=31.1
Q ss_pred CCceEEEEe--CCEEEEecChh---------------hhhhcCCeeEEEc------CCCCcEecCCCeEEEE
Q 044104 8 DSHEWVKVD--GNSATIGITDH---------------AQDHLGDVVYVEL------PEVGVTVKQDASFGAV 56 (128)
Q Consensus 8 ~~h~Wv~~~--~~~~~vGit~~---------------a~~~lG~i~~v~l------p~~G~~v~~g~~l~~i 56 (128)
++=.||..+ |..+.|=+..- ..+.=|.|..+-. ..+|+.|++||.|.+=
T Consensus 153 ~~i~WV~v~i~GTrl~i~v~Ek~~~p~~~~~~~P~~lVA~kdGvI~~i~v~~G~p~Vk~GD~VkkGqvLIsG 224 (382)
T TIGR02876 153 PEIMWAGVRVRGTTLVIKVVEKQEPKPVLKKAEPRNIVAKKDGVIKRVYVTSGEPVVKKGDVVKKGDLLISG 224 (382)
T ss_pred CCcEEEEEEEEeEEEEEEEEecCCCCCccccCCCccEEECCCCEEEEEEEcCCeEEEccCCEEcCCCEEEEe
Confidence 455898754 55554443332 2233466777653 5899999999998763
No 170
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=29.07 E-value=46 Score=28.96 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=17.2
Q ss_pred CCCCcEecCCCeEEEEEEc
Q 044104 41 PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~ 59 (128)
.+.|++|++||||++|-+.
T Consensus 453 ~k~Gd~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 453 VKVGDQVKKGDPLYTIYAE 471 (493)
T ss_pred ccCCCEecCCCeEEEEECC
Confidence 6899999999999999854
No 171
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=28.58 E-value=48 Score=28.95 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=17.2
Q ss_pred CCCCcEecCCCeEEEEEEc
Q 044104 41 PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~ 59 (128)
.+.|++|++||||++|-+.
T Consensus 454 ~k~Gd~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 454 VKVGEKVKKGDPLYTIYAE 472 (500)
T ss_pred ccCcCEeCCCCeEEEEECC
Confidence 6899999999999999854
No 172
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=28.40 E-value=68 Score=25.12 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=24.6
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
...-|.|..+. .+.|+.|..|++|+.|+...
T Consensus 50 a~~~g~~~~~~-~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 50 APAAGTLRRQV-AQEGETLPVGALLAVVADAE 80 (371)
T ss_pred cCCCeEEEEEE-cCCCCEeCCCCEEEEEecCC
Confidence 34568888885 48899999999999998643
No 173
>PF11776 DUF3315: Domain of unknown function (DUF3315); InterPro: IPR024572 This is a bacterial family of uncharacterised proteins, which include YohN from Escherichia coli K12.; PDB: 2L1S_A.
Probab=28.24 E-value=55 Score=19.45 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=14.0
Q ss_pred CCceEEEEeCCEEEEecCh
Q 044104 8 DSHEWVKVDGNSATIGITD 26 (128)
Q Consensus 8 ~~h~Wv~~~~~~~~vGit~ 26 (128)
.+|.|++..++.+.|-+++
T Consensus 28 ~G~~Wvrv~~dyvLv~~~t 46 (52)
T PF11776_consen 28 RGYHWVRVGGDYVLVAIAT 46 (52)
T ss_dssp TTEEEEE-SSEEEEEETTT
T ss_pred CCCEeEEECCeEEEEEcCC
Confidence 3799999998888776554
No 174
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=28.21 E-value=1.4e+02 Score=24.72 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=31.3
Q ss_pred CCceEEEEe--CCEEEEecCh--------------hhhhhcCCeeEEEc------CCCCcEecCCCeEEEE
Q 044104 8 DSHEWVKVD--GNSATIGITD--------------HAQDHLGDVVYVEL------PEVGVTVKQDASFGAV 56 (128)
Q Consensus 8 ~~h~Wv~~~--~~~~~vGit~--------------~a~~~lG~i~~v~l------p~~G~~v~~g~~l~~i 56 (128)
++-.||..+ |..+.|=+.. ...+.=|-|..+.. ..+|+.|++||.|.+=
T Consensus 157 ~~i~WV~i~~~GT~l~I~v~E~~~p~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLISG 227 (385)
T PF06898_consen 157 PDISWVGIEIKGTRLIIEVVEKVDPEEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGDTVKKGDVLISG 227 (385)
T ss_pred CCeEEEEEEEEeeEEEEEEEEcCCCCcccCCCCcceEECCCCEEEEEEecCCeEEecCCCEECCCCEEEee
Confidence 566899764 5555444332 22233356666653 5899999999998764
No 175
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=27.98 E-value=91 Score=29.60 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=29.4
Q ss_pred CCCCcEecCCCeEEEEE-EccccceeecCc--ceEEEEEe
Q 044104 41 PEVGVTVKQDASFGAVE-SVKATSDVNSPV--SGKVVEVN 77 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iE-s~k~~~~i~sPv--sG~V~~vN 77 (128)
.++|++|..|+.+++|- ..--.+.|..|- .|+|+.+-
T Consensus 124 ~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~~ 163 (1017)
T PRK14698 124 VKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEIA 163 (1017)
T ss_pred eecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEEc
Confidence 48899999999999994 333466776666 79999993
No 176
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=27.70 E-value=1.2e+02 Score=24.36 Aligned_cols=31 Identities=6% Similarity=-0.016 Sum_probs=23.8
Q ss_pred hhhcCC-eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGD-VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+.+|. +...-+...|+.+++|++++.+++.
T Consensus 58 f~~~~~~~~v~~~~~dG~~v~~G~~i~~~~G~ 89 (281)
T PRK06543 58 FRLVDPAITVTLAVADGERFEAGDILATVTGP 89 (281)
T ss_pred HHHhCCCeEEEEEeCCCCEecCCCEEEEEEec
Confidence 445664 4444456899999999999999986
No 177
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=27.26 E-value=53 Score=17.44 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=13.5
Q ss_pred CceEEEEeCC--EEEEecChh
Q 044104 9 SHEWVKVDGN--SATIGITDH 27 (128)
Q Consensus 9 ~h~Wv~~~~~--~~~vGit~~ 27 (128)
++.|+--.++ .+|.|+|..
T Consensus 1 ~~VWav~~~G~v~~R~Gis~~ 21 (32)
T PF06462_consen 1 DQVWAVTSDGSVYFRTGISPS 21 (32)
T ss_pred CeEEEEcCCCCEEEECcCCCC
Confidence 4678876544 588998874
No 178
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=26.90 E-value=30 Score=22.19 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=19.6
Q ss_pred cCCCCCCCcEEEEEECChhhHhhcCC
Q 044104 88 NSSPYEDGWIIKVEMDNAGELKKLMD 113 (128)
Q Consensus 88 n~dpy~~gWl~~i~~~~~~~~~~Ll~ 113 (128)
|.|++..|+.+-+.+.....++.||+
T Consensus 8 NGD~~~~g~~~~i~~~~~~sfd~lL~ 33 (80)
T cd01617 8 NGDPFFKGVRLLVNRRRFKSFDALLD 33 (80)
T ss_pred CCCCCCCCEEEEEChhhhCCHHHHHH
Confidence 78899999999887765556666664
No 179
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=26.71 E-value=64 Score=27.85 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=24.2
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
...-|.|..+- -+.|+.|..|++|+.|+..
T Consensus 139 Ap~~G~v~~il-v~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 139 SPASGVIQEFL-VKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred cCCCeEEEEEE-eCCCCEecCCCEEEEeccC
Confidence 44568888884 4899999999999999753
No 180
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=26.68 E-value=2.1e+02 Score=21.35 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=30.1
Q ss_pred cCCeeEEEcCCCCcEecCCCe---EEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEECC
Q 044104 32 LGDVVYVELPEVGVTVKQDAS---FGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDN 104 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~---l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~~ 104 (128)
-+-|+.|.||.....++.|+. .++|.+ ||+.-..+++-+|||-|+.++.
T Consensus 72 ~~GIv~i~LP~~~~~Le~gk~Y~W~~~l~C------------------------d~~~~s~~~~v~G~I~Rv~~~~ 123 (189)
T PF06051_consen 72 QPGIVSITLPEDQPPLEVGKTYRWYFSLIC------------------------DPQDRSDDIFVEGWIQRVELSP 123 (189)
T ss_pred CCCEEEEECCCCCCCCCCCCeEEEEEEEEE------------------------CCCCCCCCceEEEEEEEeCCCH
Confidence 345677777765556666653 122222 3444456678889999998764
No 181
>PF05117 DUF695: Family of unknown function (DUF695) ; InterPro: IPR016097 This entry is found at the N terminus of a number of proteobacterial proteins of unknown function.
Probab=26.62 E-value=1.4e+02 Score=20.63 Aligned_cols=47 Identities=19% Similarity=0.447 Sum_probs=31.1
Q ss_pred EEEEehhhhcCCCcccCCCCCCCcEEEEEE--CChhhHhhcCCHHHHHHHHhhhc
Q 044104 73 VVEVNEELSSSPALVNSSPYEDGWIIKVEM--DNAGELKKLMDADQYTKFCEEED 125 (128)
Q Consensus 73 V~~vN~~l~~~P~lln~dpy~~gWl~~i~~--~~~~~~~~Ll~~~~Y~~~~~~e~ 125 (128)
++.+|..|.+.... ..+ .|++.|+. ..+ +-++|-+.++|+.+.+=|+
T Consensus 18 ~~~~N~~l~~~~~~---~~~--~~~v~i~i~y~~~-~e~GlP~~ee~~~L~~iEd 66 (136)
T PF05117_consen 18 IIRVNLGLIEFAPK---ASY--PWRVQISIKYKGP-DENGLPSEEEYEELNDIED 66 (136)
T ss_pred EEEEecchhhhCcc---cCC--CEEEEEEEEecCC-CCCCCCCHHHHHHHHHHHH
Confidence 57788888764432 334 58877665 343 2368999999988776654
No 182
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=26.45 E-value=1.4e+02 Score=24.31 Aligned_cols=40 Identities=10% Similarity=0.043 Sum_probs=27.7
Q ss_pred EEEecChh--hhhhcCC-eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDH--AQDHLGD-VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~--a~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+.-. ..+.+|. +..--+.+.|+.+++|+.++.+++.
T Consensus 64 vlaG~~~a~~if~~l~~~~~v~~~~~dG~~v~~G~~i~~~~G~ 106 (294)
T PRK06978 64 VLCGVPWFDAVMRAVDPSIEVTWRYREGDRMTADSTVCELEGP 106 (294)
T ss_pred EEECHHHHHHHHHHhCCCeEEEEEcCCCCEeCCCCEEEEEEeC
Confidence 33454432 3556675 4434447899999999999999986
No 183
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=26.36 E-value=99 Score=30.36 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=30.9
Q ss_pred CCCCcEecCCCeEEEEEEcc--------ccceeecCcceEEEEEeh
Q 044104 41 PEVGVTVKQDASFGAVESVK--------ATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k--------~~~~i~sPvsG~V~~vN~ 78 (128)
.+.|+.|++|+.++.+-... ...+|+|.++|+|.-.+-
T Consensus 408 v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v~~~~~ 453 (1364)
T CHL00117 408 VQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEMHWSTD 453 (1364)
T ss_pred EeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEEEcccc
Confidence 38899999999999987632 236899999999887764
No 184
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=26.08 E-value=54 Score=28.03 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.7
Q ss_pred CCCCcEecCCCeEEEEEEcc
Q 044104 41 PEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k 60 (128)
.+.|++|++||+|++|-+.+
T Consensus 382 ~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 382 KKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCCcCEeCCCCeEEEEeCCh
Confidence 68999999999999998543
No 185
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=25.62 E-value=23 Score=29.83 Aligned_cols=53 Identities=23% Similarity=0.449 Sum_probs=0.0
Q ss_pred eeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEEC--ChhhHhhcCCHHHHHHHHhhh
Q 044104 64 DVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMD--NAGELKKLMDADQYTKFCEEE 124 (128)
Q Consensus 64 ~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~--~~~~~~~Ll~~~~Y~~~~~~e 124 (128)
.--||.+|..-.++++-+.- |+|+ ||-++... +.-+.+..|..+-|+.|+.+-
T Consensus 228 ~t~sptt~~~~~~dEn~Lav-------Peg~-WFdkLav~vAe~y~v~TvLgpDtYD~~L~eL 282 (468)
T PF11498_consen 228 NTSSPTTGLDQQTDENTLAV-------PEGD-WFDKLAVTVAEQYNVDTVLGPDTYDTFLNEL 282 (468)
T ss_dssp ---------------------------------------------------------------
T ss_pred ccCCCCcccccccccccccC-------Ccch-HHHHHhhhhccccCcccccCccchHHHHhhh
Confidence 44578888777777666654 4464 99887664 334667899999999988763
No 186
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=25.60 E-value=1.4e+02 Score=24.38 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=28.1
Q ss_pred EEEEecCh--hhhhhcCCeeEEE-cCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITD--HAQDHLGDVVYVE-LPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~--~a~~~lG~i~~v~-lp~~G~~v~~g~~l~~iEs~ 59 (128)
-+.-|+.- ...+.+|.=..++ +...|+.+++|++++.+++.
T Consensus 59 gvlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~G~~i~~v~G~ 102 (308)
T PLN02716 59 GVLAGIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGP 102 (308)
T ss_pred EEEECHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEEEC
Confidence 34455543 3356666333444 46899999999999999986
No 187
>COG0688 Psd Phosphatidylserine decarboxylase [Lipid metabolism]
Probab=25.53 E-value=88 Score=24.50 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCeeEEEcCCCC-----cEecCCCeEEEEEEccccceeecCcceEEEEE
Q 044104 33 GDVVYVELPEVG-----VTVKQDASFGAVESVKATSDVNSPVSGKVVEV 76 (128)
Q Consensus 33 G~i~~v~lp~~G-----~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~v 76 (128)
|.+..++--..| .....|.-+..--+..-.+-++||++|+|.++
T Consensus 90 G~~~sv~~ll~~~~el~~~~~~g~~v~i~Lsp~DyHr~haP~~G~i~~~ 138 (239)
T COG0688 90 GRVYSVEELLGPDDELAYGDRDGTRVSIFLSPFDYHRNHAPVDGTIIEV 138 (239)
T ss_pred CeEEEHHHhcCChhhhccccCCceEEEEEeCcceeeeEeCCCCCEEEEE
No 188
>PF09293 RNaseH_C: T4 RNase H, C terminal; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases. The 5'-3' exonucleases are conserved in organisms as diverse as bacteriophage and mammals. It adopts a SAM fold consisting of 4-5 helices packed into a bundle of two orthogonally packed alpha-hairpins. This domain is involved in interactions with DNA and proteins. 5' to 3' exonucleases that contain this domain include: Bacteriophage T4 RNase H, which has sequence similarity to the RAD2 family of eukaryotic proteins []. 5' to 3' exonuclease domain of DNA polymerase Taq, which is homologous to Escherichia coli DNA polymerase I (pol I) [, ]. Bacteriophage T5 5'-exonuclease, which are structure-specific endonucleases []. Flap endonuclease-1 (Fen-1 nuclease), a structure specific nuclease that is an essential enzyme for eukaryotic DNA replication and repair []. ; GO: 0003677 DNA binding, 0003824 catalytic activity; PDB: 1TFR_A 3H8S_A 2IHN_A 3H7I_A 3H8W_A 3H8J_A.
Probab=24.86 E-value=67 Score=22.82 Aligned_cols=28 Identities=29% Similarity=0.611 Sum_probs=19.3
Q ss_pred CcEEEEEECChhhHhhcCCHHHHHHHHhhh
Q 044104 95 GWIIKVEMDNAGELKKLMDADQYTKFCEEE 124 (128)
Q Consensus 95 gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e 124 (128)
-||-.+ .+.++...||+.++|.+|.+++
T Consensus 45 ~~l~~~--~~~ed~~~llt~e~~~Rf~eN~ 72 (122)
T PF09293_consen 45 KWLESI--FDMEDPKKLLTEEQYKRFKENR 72 (122)
T ss_dssp HHHHHH--H-GGGHHHHS-HHHHHHHHHHH
T ss_pred HHHHHH--hCcchHHHhcCHHHHHHHhhhh
Confidence 344444 3456778999999999999875
No 189
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=24.47 E-value=92 Score=23.83 Aligned_cols=31 Identities=32% Similarity=0.549 Sum_probs=26.0
Q ss_pred hhhcCCeeEEEc-CCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVEL-PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~l-p~~G~~v~~g~~l~~iEs~ 59 (128)
.+..|..+|+.. |+.|+.+++|+.+..|...
T Consensus 159 ~D~~Gq~hyv~veP~~~~~~~~G~~VLlv~r~ 190 (202)
T PF07290_consen 159 KDQFGQLHYVMVEPEAGEEFKQGTEVLLVDRF 190 (202)
T ss_pred EecCCCEEEEEEeeCCCCCCCCCCEEEEEEeh
Confidence 467889898766 7889999999999999773
No 190
>PRK04081 hypothetical protein; Provisional
Probab=24.26 E-value=62 Score=24.98 Aligned_cols=20 Identities=20% Similarity=0.513 Sum_probs=17.8
Q ss_pred HhhcCCHHHHHHHHhhhccC
Q 044104 108 LKKLMDADQYTKFCEEEDSK 127 (128)
Q Consensus 108 ~~~Ll~~~~Y~~~~~~e~~~ 127 (128)
.+.+|+.+|.++++++|.+|
T Consensus 82 ~ER~LS~eE~dkLi~eE~~K 101 (207)
T PRK04081 82 TERVLSQEEIDKLIKEEEAK 101 (207)
T ss_pred cccccCHHHHHHHHHHHHHh
Confidence 56899999999999999775
No 191
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.93 E-value=1.5e+02 Score=23.41 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=27.1
Q ss_pred EEEEecChhhhhhcCCe--eEE-EcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDHAQDHLGDV--VYV-ELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~a~~~lG~i--~~v-~lp~~G~~v~~g~~l~~iEs~ 59 (128)
.+.-|+ +++.+++-.. ..+ ...+.|+.+++|++++.+++.
T Consensus 39 ~v~~G~-~~~~~i~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 81 (269)
T cd01568 39 GVLAGL-EVAEEVFELLDGIEVEWLVKDGDRVEAGQVLLEVEGP 81 (269)
T ss_pred EEEECH-HHHHHHHHHhCCeEEEEEeCCCCEecCCCEEEEEEEc
Confidence 344554 4444444333 334 446899999999999999996
No 192
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=23.28 E-value=1.1e+02 Score=24.11 Aligned_cols=31 Identities=16% Similarity=0.067 Sum_probs=23.4
Q ss_pred EecCCCeEEEEEEccccceeecCcceEEEEE
Q 044104 46 TVKQDASFGAVESVKATSDVNSPVSGKVVEV 76 (128)
Q Consensus 46 ~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~v 76 (128)
....|.-+..-=|....+.++||++|+|.+.
T Consensus 112 ~~~~g~~~~iyLsp~dYHr~hsP~~G~v~~~ 142 (265)
T PRK03934 112 LVNGFDYINFYLSPKDYHRYHAPCDLEILEA 142 (265)
T ss_pred hcCCcEEEEEEECcceEEEEeccCCcEEEEE
Confidence 4444554555577788999999999999985
No 193
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.21 E-value=1.4e+02 Score=23.62 Aligned_cols=57 Identities=18% Similarity=0.164 Sum_probs=34.8
Q ss_pred ecChhhhhhcCCe---eEE-EcCCCCcEecCCCeEEEEEEccc--------cceeecCcceEEEEEehhh
Q 044104 23 GITDHAQDHLGDV---VYV-ELPEVGVTVKQDASFGAVESVKA--------TSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 23 Git~~a~~~lG~i---~~v-~lp~~G~~v~~g~~l~~iEs~k~--------~~~i~sPvsG~V~~vN~~l 80 (128)
|+ +++...+..+ ..+ -+.+.|+.+++|++++.+++.-. +--|.+..||.=+..+.-+
T Consensus 43 G~-~~~~~i~~~~~~~l~v~~~~~dG~~v~~g~~i~~i~G~~~~ll~~Er~~ln~L~~~SGIAT~t~~~v 111 (268)
T cd01572 43 GL-PVAEEVFELLDPGIEVEWLVKDGDRVEPGQVLATVEGPARSLLTAERTALNFLQRLSGIATLTRRYV 111 (268)
T ss_pred CH-HHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4444444332 344 44689999999999999999632 2235555555555444433
No 194
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=22.96 E-value=1.1e+02 Score=25.23 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=16.8
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
-|.|..+.+ .+|+.|..|+++++|.
T Consensus 261 dG~V~~~~~-~~G~~v~~g~~l~~i~ 285 (421)
T TIGR03794 261 SGRVIELNY-TPGQLVAAGAPLASLE 285 (421)
T ss_pred CeEEEEeeC-CCCCEecCCCcEEEEE
Confidence 355655554 7777777777777774
No 195
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=22.76 E-value=1.1e+02 Score=23.62 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=22.1
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
-|.|..+.+ ..|+.+.+|+++++|....
T Consensus 142 ~G~V~~~~~-~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 142 DGTIGRRLV-EVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred CcEEEEEEc-CCCceeCCCCcEEEEEcCC
Confidence 466666655 7899999999999997654
No 196
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.25 E-value=1.5e+02 Score=24.00 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=27.4
Q ss_pred EEEEecChhh--h-hhcCC--eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDHA--Q-DHLGD--VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~a--~-~~lG~--i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
-+.-|+.... . +.+|. +..-.+.+.|+.+++|++++++++.
T Consensus 55 gilaG~~~a~~if~~~~~~~~~~v~~~~~dG~~v~~g~~i~~i~G~ 100 (289)
T PRK07896 55 GVVAGLDVALLVLDEVLGTDGYEVLDRVEDGARVPPGQALLTVTAP 100 (289)
T ss_pred EEEECHHHHHHHHHHhcCCCceEEEEEcCCCCEecCCCEEEEEEEC
Confidence 4445655443 2 23464 3333446899999999999999996
No 197
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=21.90 E-value=1e+02 Score=24.18 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=22.8
Q ss_pred ecCCCeEEEEEEccccceeecCcceEEEEE
Q 044104 47 VKQDASFGAVESVKATSDVNSPVSGKVVEV 76 (128)
Q Consensus 47 v~~g~~l~~iEs~k~~~~i~sPvsG~V~~v 76 (128)
...|.-+..-=|..-.+.++||++|+|.+.
T Consensus 123 f~~G~~~~i~Lsp~DYHr~h~Pv~G~v~~~ 152 (259)
T PRK03140 123 YAGGTYMVLYLSPSHYHRIHSPISGTVTEQ 152 (259)
T ss_pred hcCCeEEEEEECccceEEEeccCCcEEEEE
Confidence 333544555567788999999999999997
No 198
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=21.76 E-value=1.1e+02 Score=24.54 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=25.6
Q ss_pred EEEecChhhhhhc-CCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDHAQDHL-GDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~a~~~l-G~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+.... +.+ +--..+...+.|+.+.+|+++++|++.
T Consensus 37 v~aG~~~~~-~~~~~~~~~i~~~~dG~~v~~g~~i~~i~G~ 76 (302)
T cd01571 37 VLCGLEEVL-ALLEGLPVKVYALPEGTIFNPKEPVLRIEGP 76 (302)
T ss_pred HHhhHHHHH-HHHhCCCeEEEEeCCCCEECCCCcEEEEEeC
Confidence 334555333 333 212233456899999999999999995
No 199
>TIGR02388 rpoC2_cyan DNA-directed RNA polymerase, beta'' subunit. The family consists of the product of the rpoC2 gene, a subunit of DNA-directed RNA polymerase of cyanobacteria and chloroplasts. RpoC2 corresponds largely to the C-terminal region of the RpoC (the beta' subunit) of other bacteria. Members of this family are designated beta'' in chloroplasts/plastids, and beta' (confusingly) in Cyanobacteria, where RpoC1 is called beta' in chloroplasts/plastids and gamma in Cyanobacteria. We prefer to name this family beta'', after its organellar members, to emphasize that this RpoC1 and RpoC2 together replace RpoC in other bacteria.
Probab=21.66 E-value=1.3e+02 Score=29.25 Aligned_cols=39 Identities=31% Similarity=0.244 Sum_probs=32.4
Q ss_pred CCCCcEecCCCeEEEEEEc-------cccceeecCcceEEEEEehh
Q 044104 41 PEVGVTVKQDASFGAVESV-------KATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~-------k~~~~i~sPvsG~V~~vN~~ 79 (128)
.+.|+.|++++.++.+-+. |..-.++|..+|+|-.-+..
T Consensus 407 v~~~q~v~~~q~iae~~~~~~~~~~e~~~k~i~s~~~Ge~~~~~~~ 452 (1227)
T TIGR02388 407 VEDGQTVDAGQLLAEIALGAVRKSTEKATKDVASDLAGEVKFDKVV 452 (1227)
T ss_pred EECCCEEecCcEEEEeccCCcccceeEEEEEEecCCCceEEecccc
Confidence 4889999999999999874 33457999999999887654
No 200
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=21.16 E-value=49 Score=20.15 Aligned_cols=54 Identities=11% Similarity=0.335 Sum_probs=34.6
Q ss_pred cceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHH
Q 044104 62 TSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKF 120 (128)
Q Consensus 62 ~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~ 120 (128)
+.++..+.-|+++.. ...++.+.. .....-++-|+-.+.+.+....+..+|++.
T Consensus 11 ~~~~l~~~GG~~l~~----~~~~~~leG-~~~~~~~viieFPs~~aa~~~~~speYq~~ 64 (65)
T PF07045_consen 11 VPPILEKYGGRVLAR----GGEPEVLEG-DWDPDRVVIIEFPSMEAAKAWYNSPEYQAL 64 (65)
T ss_dssp HHHHHHHTT-EEEEE----CEEEEEEES-T-SSSEEEEEEESSHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHcCCEEEEE----CCceeEEec-CCCCCeEEEEECCCHHHHHHHHCCHhHHhh
Confidence 334555667777766 223444444 233356788888888888889999999864
No 201
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=21.08 E-value=1.8e+02 Score=25.87 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=16.1
Q ss_pred cceeecCcceEEEEEehhhh
Q 044104 62 TSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 62 ~~~i~sPvsG~V~~vN~~l~ 81 (128)
...|.||++|+|+.++.+..
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~G 541 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEG 541 (592)
T ss_pred CceEeCCCcEEEEEEEeCCC
Confidence 46799999999999965433
No 202
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=20.86 E-value=1.2e+02 Score=23.49 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=18.5
Q ss_pred EEEEccccceeecCcceEEEEE
Q 044104 55 AVESVKATSDVNSPVSGKVVEV 76 (128)
Q Consensus 55 ~iEs~k~~~~i~sPvsG~V~~v 76 (128)
.-=|..-.+.++||++|+|.+.
T Consensus 89 iyLsp~DYHr~hsPv~G~v~~~ 110 (238)
T TIGR00163 89 TYLSPRDYHRFHSPCDCRLRKM 110 (238)
T ss_pred EEECccceeEEeccCCcEEEEE
Confidence 3466778999999999999985
Done!