Query 044104
Match_columns 128
No_of_seqs 105 out of 1082
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:01:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044104.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044104hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3klr_A Glycine cleavage system 100.0 1.5E-49 5E-54 281.5 14.7 124 2-125 1-124 (125)
2 3hgb_A Glycine cleavage system 100.0 3.6E-49 1.2E-53 287.6 12.4 123 1-123 26-155 (155)
3 1hpc_A H protein of the glycin 100.0 5.9E-48 2E-52 275.4 14.3 128 1-128 4-131 (131)
4 3mxu_A Glycine cleavage system 100.0 3.3E-49 1.1E-53 284.8 6.7 122 1-122 22-143 (143)
5 3tzu_A GCVH, glycine cleavage 100.0 5.2E-48 1.8E-52 277.1 8.9 120 1-123 11-136 (137)
6 1onl_A Glycine cleavage system 100.0 6.9E-47 2.4E-51 268.9 14.5 124 1-124 4-127 (128)
7 3a7l_A H-protein, glycine clea 100.0 1.3E-46 4.4E-51 267.5 14.1 124 1-124 4-128 (128)
8 1zko_A Glycine cleavage system 100.0 8.9E-44 3E-48 255.2 13.7 123 2-124 14-136 (136)
9 1gjx_A Pyruvate dehydrogenase; 98.7 1.2E-09 4E-14 70.2 0.1 73 23-103 6-78 (81)
10 2kcc_A Acetyl-COA carboxylase 98.6 1.1E-07 3.7E-12 61.7 5.9 69 28-105 9-77 (84)
11 3crk_C Dihydrolipoyllysine-res 98.5 1.2E-07 4.2E-12 61.7 5.1 58 22-80 8-66 (87)
12 1bdo_A Acetyl-COA carboxylase; 98.5 7.9E-08 2.7E-12 61.3 3.7 52 29-80 9-66 (80)
13 1qjo_A Dihydrolipoamide acetyl 98.5 1.3E-07 4.5E-12 60.2 4.4 58 22-81 5-62 (80)
14 1ghj_A E2, E2, the dihydrolipo 98.5 1.1E-07 3.9E-12 60.5 3.8 49 32-81 15-63 (79)
15 1k8m_A E2 component of branche 98.5 1.2E-07 4.2E-12 62.7 4.0 76 21-104 6-82 (93)
16 1z6h_A Biotin/lipoyl attachmen 98.5 3.2E-07 1.1E-11 57.0 5.6 49 31-80 6-54 (72)
17 2l5t_A Lipoamide acyltransfera 98.4 1.2E-07 4.2E-12 60.0 2.9 49 32-81 15-63 (77)
18 1dcz_A Transcarboxylase 1.3S s 98.4 6.2E-07 2.1E-11 56.4 5.7 50 29-79 13-62 (77)
19 2dnc_A Pyruvate dehydrogenase 98.4 5E-07 1.7E-11 60.3 5.3 49 32-81 21-69 (98)
20 2d5d_A Methylmalonyl-COA decar 98.4 5.4E-07 1.9E-11 56.0 4.9 50 29-79 10-59 (74)
21 1iyu_A E2P, dihydrolipoamide a 98.3 5.2E-07 1.8E-11 57.3 4.2 47 34-81 14-60 (79)
22 2dne_A Dihydrolipoyllysine-res 98.3 5.7E-07 1.9E-11 61.2 4.2 47 33-80 22-68 (108)
23 1y8o_B Dihydrolipoyllysine-res 98.3 9.3E-07 3.2E-11 62.1 5.1 64 33-103 42-105 (128)
24 2jku_A Propionyl-COA carboxyla 98.2 4.2E-07 1.5E-11 60.1 1.9 51 29-80 30-80 (94)
25 2dn8_A Acetyl-COA carboxylase 98.2 2.1E-06 7.2E-11 57.1 5.3 69 28-105 21-89 (100)
26 2ejm_A Methylcrotonoyl-COA car 98.2 1.8E-06 6.3E-11 57.4 5.0 68 29-104 19-86 (99)
27 2k7v_A Dihydrolipoyllysine-res 98.2 9.2E-08 3.2E-12 61.9 -1.4 63 33-103 11-73 (85)
28 1pmr_A Dihydrolipoyl succinylt 98.1 8.8E-08 3E-12 61.3 -2.9 47 33-80 17-63 (80)
29 3n6r_A Propionyl-COA carboxyla 98.0 5.8E-06 2E-10 71.5 6.2 51 30-81 618-668 (681)
30 3u9t_A MCC alpha, methylcroton 97.9 4.2E-06 1.4E-10 72.4 2.1 73 8-81 572-658 (675)
31 3va7_A KLLA0E08119P; carboxyla 97.8 2.4E-05 8.1E-10 71.8 5.7 51 29-80 1172-1222(1236)
32 3hbl_A Pyruvate carboxylase; T 97.7 3.6E-05 1.2E-09 70.2 5.2 51 30-81 1083-1133(1150)
33 2k32_A A; NMR {Campylobacter j 97.6 3.8E-05 1.3E-09 51.8 3.5 68 30-104 7-103 (116)
34 1zy8_K Pyruvate dehydrogenase 97.5 1.5E-05 5E-10 60.9 0.0 48 33-81 18-65 (229)
35 3dva_I Dihydrolipoyllysine-res 97.5 1.7E-05 6E-10 65.3 0.0 48 33-81 17-64 (428)
36 3bg3_A Pyruvate carboxylase, m 97.2 7.9E-05 2.7E-09 65.1 1.1 48 31-79 656-703 (718)
37 2qf7_A Pyruvate carboxylase pr 97.1 0.00017 5.7E-09 65.9 2.4 47 33-80 1104-1150(1165)
38 3d4r_A Domain of unknown funct 97.0 0.0014 4.9E-08 47.7 6.1 46 33-79 109-155 (169)
39 3ne5_B Cation efflux system pr 96.0 0.0066 2.3E-07 49.1 4.7 55 28-82 125-227 (413)
40 3fpp_A Macrolide-specific effl 95.8 0.0065 2.2E-07 47.2 3.8 30 29-59 36-65 (341)
41 3na6_A Succinylglutamate desuc 95.8 0.018 6.1E-07 45.6 6.1 39 40-78 271-313 (331)
42 3lnn_A Membrane fusion protein 95.6 0.0098 3.4E-07 46.5 3.9 32 28-60 61-92 (359)
43 2f1m_A Acriflavine resistance 95.5 0.0039 1.3E-07 47.2 1.4 30 29-59 27-56 (277)
44 3fmc_A Putative succinylglutam 95.4 0.022 7.4E-07 45.8 5.4 54 40-102 304-363 (368)
45 3cdx_A Succinylglutamatedesucc 95.3 0.032 1.1E-06 44.4 6.0 38 41-78 282-323 (354)
46 1vf7_A Multidrug resistance pr 94.9 0.0097 3.3E-07 47.2 1.8 30 29-59 48-77 (369)
47 4dk0_A Putative MACA; alpha-ha 93.5 0.0092 3.2E-07 46.7 -1.0 31 28-59 36-66 (369)
48 2qj8_A MLR6093 protein; struct 93.4 0.16 5.5E-06 39.8 6.1 40 39-78 270-313 (332)
49 2auk_A DNA-directed RNA polyme 85.9 0.75 2.6E-05 33.6 3.8 38 40-79 65-102 (190)
50 2gpr_A Glucose-permease IIA co 77.2 3 0.0001 29.5 4.2 39 19-60 76-114 (154)
51 1f3z_A EIIA-GLC, glucose-speci 76.3 3.6 0.00012 29.3 4.4 49 8-59 66-118 (161)
52 1f3z_A EIIA-GLC, glucose-speci 75.8 1.8 6.1E-05 31.0 2.7 25 50-77 40-64 (161)
53 2gpr_A Glucose-permease IIA co 74.9 1.3 4.5E-05 31.4 1.8 25 50-77 35-59 (154)
54 1ax3_A Iiaglc, glucose permeas 72.2 1.9 6.5E-05 30.8 2.1 25 50-77 40-64 (162)
55 2dn8_A Acetyl-COA carboxylase 72.1 1.2 4.1E-05 28.7 0.9 32 50-81 5-36 (100)
56 2xha_A NUSG, transcription ant 70.7 3.9 0.00013 30.1 3.6 40 41-90 25-64 (193)
57 3our_B EIIA, phosphotransferas 70.5 3.5 0.00012 30.1 3.3 16 63-78 72-87 (183)
58 3our_B EIIA, phosphotransferas 69.4 6.4 0.00022 28.8 4.4 52 6-60 86-141 (183)
59 1ax3_A Iiaglc, glucose permeas 69.1 2.9 9.8E-05 29.9 2.5 39 19-60 81-119 (162)
60 1bdo_A Acetyl-COA carboxylase; 68.2 2.9 9.9E-05 25.4 2.1 27 30-57 54-80 (80)
61 2l5t_A Lipoamide acyltransfera 63.4 5.5 0.00019 23.9 2.7 26 31-57 51-76 (77)
62 1iyu_A E2P, dihydrolipoamide a 62.3 6.4 0.00022 23.7 2.9 29 30-59 47-75 (79)
63 2bco_A Succinylglutamate desuc 57.7 4.2 0.00015 32.0 1.7 33 41-77 281-313 (350)
64 1yw4_A Succinylglutamate desuc 56.8 1.7 5.8E-05 34.2 -0.8 38 42-79 280-322 (341)
65 2xhc_A Transcription antitermi 47.9 14 0.00046 29.5 3.2 42 41-90 65-106 (352)
66 2xha_A NUSG, transcription ant 47.5 7.7 0.00026 28.6 1.6 30 42-77 86-115 (193)
67 2xhc_A Transcription antitermi 43.1 11 0.00037 30.0 2.0 30 42-77 126-155 (352)
68 1m1f_A KID toxin protein; toxi 40.1 10 0.00035 24.3 1.2 41 32-72 3-48 (110)
69 1uou_A Thymidine phosphorylase 39.7 25 0.00085 29.1 3.7 22 39-60 415-436 (474)
70 1brw_A PYNP, protein (pyrimidi 39.4 21 0.00072 29.2 3.2 21 40-60 381-401 (433)
71 2dsj_A Pyrimidine-nucleoside ( 38.6 22 0.00075 29.0 3.1 21 40-60 373-393 (423)
72 1ub4_A MAZF protein; toxin, an 34.9 13 0.00044 24.0 1.0 41 32-72 8-53 (110)
73 1o4u_A Type II quinolic acid p 32.7 50 0.0017 25.3 4.2 38 20-59 55-95 (285)
74 2tpt_A Thymidine phosphorylase 32.4 21 0.00073 29.2 2.1 23 38-60 383-406 (440)
75 1ne8_A Conserved hypothetical 31.9 17 0.00057 23.5 1.2 28 32-59 6-34 (117)
76 3l0g_A Nicotinate-nucleotide p 30.9 78 0.0027 24.6 5.0 41 19-59 65-108 (300)
77 3paj_A Nicotinate-nucleotide p 30.8 72 0.0025 25.0 4.9 42 19-60 89-133 (320)
78 3h5q_A PYNP, pyrimidine-nucleo 30.1 29 0.001 28.4 2.5 21 38-58 381-402 (436)
79 1x1o_A Nicotinate-nucleotide p 27.9 64 0.0022 24.7 4.1 40 20-59 54-96 (286)
80 3gnn_A Nicotinate-nucleotide p 27.0 82 0.0028 24.4 4.5 41 19-59 67-110 (298)
81 2b7n_A Probable nicotinate-nuc 26.2 74 0.0025 23.9 4.1 38 20-59 42-82 (273)
82 3tqv_A Nicotinate-nucleotide p 23.9 85 0.0029 24.2 4.1 42 19-60 56-100 (287)
83 3it5_A Protease LASA; metallop 23.9 46 0.0016 23.7 2.4 18 41-58 87-104 (182)
84 1at0_A 17-hedgehog; developmen 23.8 1.4E+02 0.0049 20.0 4.9 11 64-74 123-135 (145)
85 3lnn_A Membrane fusion protein 23.2 52 0.0018 25.0 2.7 48 51-105 45-93 (359)
86 3gqb_A V-type ATP synthase alp 23.1 1.2E+02 0.0043 25.7 5.2 36 41-76 123-160 (578)
87 1qpo_A Quinolinate acid phosph 22.1 89 0.003 23.9 3.9 24 36-59 71-95 (284)
88 1qap_A Quinolinic acid phospho 21.7 1.1E+02 0.0038 23.4 4.4 40 20-59 66-109 (296)
89 2jbm_A Nicotinate-nucleotide p 21.5 88 0.003 23.9 3.8 38 20-59 55-95 (299)
90 3fo8_D Tail sheath protein GP1 21.3 37 0.0013 26.2 1.5 69 30-101 12-90 (283)
91 3vr4_A V-type sodium ATPase ca 20.8 1.8E+02 0.0063 24.8 5.8 36 41-76 131-169 (600)
No 1
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=100.00 E-value=1.5e-49 Score=281.49 Aligned_cols=124 Identities=46% Similarity=0.850 Sum_probs=120.7
Q ss_pred CCcccCCCceEEEEeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 2 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 2 ~~~~y~~~h~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
.+|+||++|+||+.+++.++||||+|||+++|+|+||+||++|++|++|++|++|||.|++++|+||++|+|+++|.+|.
T Consensus 1 ~~l~Yt~~HeWv~~e~~~~~vGITd~Aq~~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~ 80 (125)
T 3klr_A 1 SVRKFTEKHEWVTTENGVGTVGISNFAQEALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALA 80 (125)
T ss_dssp CCCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGT
T ss_pred CCcEeCCCCEEEEEcCCEEEEeeCHHHHhhCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhh
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhhhc
Q 044104 82 SSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEED 125 (128)
Q Consensus 82 ~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e~ 125 (128)
++|++||++||++|||++|++++++++++||++++|+++|++.+
T Consensus 81 ~~P~liN~dpy~~gWl~ki~~~~~~e~~~Ll~~~~Y~~~~~~~~ 124 (125)
T 3klr_A 81 ENPGLVNKSCYEDGWLIKMTFSNPSELDELMSEEAYEKYIKSIE 124 (125)
T ss_dssp TCTTHHHHCTTTTTCCEEEEESCGGGGGGSBCHHHHHHHHHHHH
T ss_pred hChHhhcCCCCCCceEEEEEECCHHHHHhcCCHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999998753
No 2
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=100.00 E-value=3.6e-49 Score=287.60 Aligned_cols=123 Identities=46% Similarity=0.858 Sum_probs=119.5
Q ss_pred CCCcccCCCceEEEEeCC-EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 1 IKDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~~-~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
|++++|+++|+||+.+++ .++||||+|||+.||+|+||+||++|++|++|++|++|||.|++++|+||++|+|++||++
T Consensus 26 P~~l~Yt~~HeWv~~egdg~~~VGITd~Aq~~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~ 105 (155)
T 3hgb_A 26 PSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSD 105 (155)
T ss_dssp CTTCEECTTSEEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTH
T ss_pred cccceECCCCEEEEEcCCcEEEEeeCHHHHHhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 889999999999999977 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccCCCCCCCcEEEEEECC------hhhHhhcCCHHHHHHHHhh
Q 044104 80 LSSSPALVNSSPYEDGWIIKVEMDN------AGELKKLMDADQYTKFCEE 123 (128)
Q Consensus 80 l~~~P~lln~dpy~~gWl~~i~~~~------~~~~~~Ll~~~~Y~~~~~~ 123 (128)
|.++|++||+|||++|||++|++++ ++++++||++++|+++|++
T Consensus 106 L~d~PeliN~dPyg~GWl~kik~~d~~~~~~~~el~~Ll~~~~Y~~~~~e 155 (155)
T 3hgb_A 106 LDGTPQLVNSDPYGAGWLLDIQVDSSDVAALESALTTLLDAEAYRGTLTE 155 (155)
T ss_dssp HHHCTTHHHHCTTTTTCCEEEECCTTTSCCHHHHHTTSBCHHHHHHHCC-
T ss_pred hhhChHhhccCCCCCcEEEEEEECCcccccchhHHHhCCCHHHHHHHhcC
Confidence 9999999999999999999999999 7899999999999999864
No 3
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=100.00 E-value=5.9e-48 Score=275.37 Aligned_cols=128 Identities=66% Similarity=1.098 Sum_probs=125.8
Q ss_pred CCCcccCCCceEEEEeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 1 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|++++||++|+||+.+++.++||||+++|.++|+|+++++|++|++|++|++|++|||+|++.+|+||++|+|+++|.++
T Consensus 4 p~~l~Yt~~HeWv~~e~~~~~vGitd~a~~~lG~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l 83 (131)
T 1hpc_A 4 LDGLKYAPSHEWVKHEGSVATIGITDHAQDHLGEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGL 83 (131)
T ss_dssp CTTCEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHH
T ss_pred ccccEECCCCEEEEEcCCEEEEEEehhhcccCCCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhhhccCC
Q 044104 81 SSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEEDSKH 128 (128)
Q Consensus 81 ~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e~~~~ 128 (128)
.++|+++|++||++|||++|++++++++++||++++|.++|++++++|
T Consensus 84 ~~~P~lvn~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~~~~~~ 131 (131)
T 1hpc_A 84 TGKPGLINSSPYEDGWMIKIKPTSPDELESLLGAKEYTKFCEEEDAAH 131 (131)
T ss_dssp HHCTTHHHHCTTTTTCCEEEEESSGGGGGGSBCHHHHHHHHHHHHHCC
T ss_pred hcChhhhccCCCCCceEEEEEECCHHHHHhcCCHHHHHHHHhhhhccC
Confidence 999999999999999999999999999999999999999999988887
No 4
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=100.00 E-value=3.3e-49 Score=284.80 Aligned_cols=122 Identities=39% Similarity=0.758 Sum_probs=117.9
Q ss_pred CCCcccCCCceEEEEeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 1 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
+++++|+++|+||+.+++.++||||+|||++||+|+||+||++|++|++|++|++|||.|++++|+||++|+|+++|++|
T Consensus 22 ~~~l~Yt~~HeWv~~eg~~~~VGITd~Aq~~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L 101 (143)
T 3mxu_A 22 MSKTYFTQDHEWLSVEGQVVTVGITDYAQEQLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAAL 101 (143)
T ss_dssp CCEEEECSSSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred hccceeCCCCEEEEEcCCEEEEeeCHHHHhhcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhh
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHh
Q 044104 81 SSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCE 122 (128)
Q Consensus 81 ~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~ 122 (128)
.++|++||+|||++|||++|+++|++++++||++++|+++|+
T Consensus 102 ~d~PeliN~dPy~~GWl~ki~~~d~~el~~Ll~~~~Y~~~~~ 143 (143)
T 3mxu_A 102 AESPELVNQKAETEGWLWKMTVQDETQLERLLDEAAYKELIG 143 (143)
T ss_dssp GTCTTHHHHSTTTTTCCEEEECSCTHHHHHHHHTTSSEECC-
T ss_pred hhChHhhhCCCCCCCeEEEEEECCHHHHHhcCCHHHHHHHhC
Confidence 999999999999999999999999999999999999988763
No 5
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=100.00 E-value=5.2e-48 Score=277.13 Aligned_cols=120 Identities=38% Similarity=0.668 Sum_probs=116.2
Q ss_pred CCCcccCCCceEEE------EeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEE
Q 044104 1 IKDLKYADSHEWVK------VDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVV 74 (128)
Q Consensus 1 P~~~~y~~~h~Wv~------~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~ 74 (128)
|++++|+++|+||+ .+++.++||||+|||++||+|+||+||++|++|++|++|++|||.|++++|+||++|+|+
T Consensus 11 P~~l~Yt~~HeWv~~~~~~~~e~~~~~VGITd~Aq~~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~Vv 90 (137)
T 3tzu_A 11 PGDRSYTADHEWIDIAPGAATPDGPVRVGITSVAVEALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIV 90 (137)
T ss_dssp CTTSEECTTSEEESCCTTCCCCSSCEEEEECHHHHHHHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEE
T ss_pred CccceeCCCCEEEEccCcccccCCEEEEeeCHHHHhhcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEE
Confidence 89999999999999 577899999999999999999999999999999999999999999999999999999999
Q ss_pred EEehhhhcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhh
Q 044104 75 EVNEELSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEE 123 (128)
Q Consensus 75 ~vN~~l~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~ 123 (128)
++|++|.++|++||+|||++|||++|+++ ++++||++++|+++|+.
T Consensus 91 evN~~l~~~P~liN~dPy~~GWl~ki~~~---e~~~Ll~~~~Y~~~~~~ 136 (137)
T 3tzu_A 91 EVNTAAVDDPATIATDPYGAGWLYSVQPT---AVGELLTASEYAGQNGL 136 (137)
T ss_dssp EECHHHHHCTHHHHHCTTTTTCCEEEEEE---EECCCBCHHHHHHHTTC
T ss_pred EehhhhhcChhhhcCCCCcCCcEEEEEeh---hhhhCCCHHHHHHHhcc
Confidence 99999999999999999999999999998 67899999999999863
No 6
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=100.00 E-value=6.9e-47 Score=268.92 Aligned_cols=124 Identities=48% Similarity=0.846 Sum_probs=121.8
Q ss_pred CCCcccCCCceEEEEeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 1 IKDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|++++||++|+||+.+++.++||||+++|..+|+|+++++|++|++|++|++|++|||+|++.+|+||++|+|+++|.+|
T Consensus 4 p~~l~yt~~heWv~~~~~~~~vGit~~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l 83 (128)
T 1onl_A 4 PKDRFYTKTHEWALPEGDTVLVGITDYAQDALGDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLAL 83 (128)
T ss_dssp CSSSEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHH
T ss_pred CcccEECCCcEEEEecCCEEEEEeehHHhhcCCCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhh
Confidence 88999999999999998999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhhh
Q 044104 81 SSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 124 (128)
Q Consensus 81 ~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e 124 (128)
.++|+++|++||++|||++|++++++++++||++++|.++|+++
T Consensus 84 ~~~P~lvn~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~~ 127 (128)
T 1onl_A 84 EKTPELVNQDPYGEGWIFRLKPRDMGDLDELLDAGGYQEVLESE 127 (128)
T ss_dssp HHCTTHHHHCTTTTTCCEEEEESCGGGGGGSBCHHHHHHHHHHT
T ss_pred ccChhhhccCCCCCccEEEEEECCHHHHHhcCCHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999875
No 7
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=100.00 E-value=1.3e-46 Score=267.52 Aligned_cols=124 Identities=49% Similarity=0.881 Sum_probs=120.9
Q ss_pred CCCcccCCCceEEEEeCC-EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 1 IKDLKYADSHEWVKVDGN-SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 1 P~~~~y~~~h~Wv~~~~~-~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
|++++||++|+||+.+++ .++||||+++|.++|+|+++++|++|++|++|++|++|||+|++.+|+||++|+|+++|.+
T Consensus 4 p~~l~yt~~heWv~~~~~g~~~vGitd~a~~~lG~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~ 83 (128)
T 3a7l_A 4 PAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDA 83 (128)
T ss_dssp CTTCEECTTSEEEEECTTSCEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred cccceEcCCcEEEEECCCcEEEEEEehHHhccCCceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhh
Confidence 889999999999999877 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhhh
Q 044104 80 LSSSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 124 (128)
Q Consensus 80 l~~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e 124 (128)
|.++|+++|++||++|||++|++++++++++||++++|.++|+++
T Consensus 84 l~~~P~lvn~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~~ 128 (128)
T 3a7l_A 84 LSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 128 (128)
T ss_dssp GGTCTTHHHHCTTTTTCCEEEEESCGGGGGGCBCHHHHHHHHHTC
T ss_pred hccChHHhccCCCCCccEEEEEECCHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999853
No 8
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=100.00 E-value=8.9e-44 Score=255.17 Aligned_cols=123 Identities=51% Similarity=0.956 Sum_probs=119.4
Q ss_pred CCcccCCCceEEEEeCCEEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 2 KDLKYADSHEWVKVDGNSATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 2 ~~~~y~~~h~Wv~~~~~~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
++++|+++|+||+.+++.++||||++++.++|+|+++++|++|++|++|++|++||++|++.+|+||++|+|+++|.++.
T Consensus 14 ~~~~yt~~HeWv~~e~~~~~vGit~~a~~~lG~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~ 93 (136)
T 1zko_A 14 KMKKYTKTHEWVSIEDKVATVGITNHAQEQLGDVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLD 93 (136)
T ss_dssp EEEEECTTSEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGG
T ss_pred ccceeCCCCEEEEecCCEEEEeeEhhhcccCCCcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccCCCCCCCcEEEEEECChhhHhhcCCHHHHHHHHhhh
Q 044104 82 SSPALVNSSPYEDGWIIKVEMDNAGELKKLMDADQYTKFCEEE 124 (128)
Q Consensus 82 ~~P~lln~dpy~~gWl~~i~~~~~~~~~~Ll~~~~Y~~~~~~e 124 (128)
++|+++|++||++|||++|++++++++++||++++|.++|++|
T Consensus 94 ~~p~~Vn~dp~g~GwL~~i~~~~~~~~~~Ll~~~~Y~~~~~~~ 136 (136)
T 1zko_A 94 TEPELINKDPEGEGWLFKMEISDEGELEDLLDEQAYQEFCAQE 136 (136)
T ss_dssp TCTTHHHHCTTTTTCCEEEEESCGGGGGGSBCHHHHHHHHHC-
T ss_pred cCccCcccCCCCCeEEEEEEECCHHHHHhCCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999864
No 9
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=98.74 E-value=1.2e-09 Score=70.15 Aligned_cols=73 Identities=33% Similarity=0.442 Sum_probs=58.4
Q ss_pred ecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEE
Q 044104 23 GITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEM 102 (128)
Q Consensus 23 Git~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~ 102 (128)
-+.+.+....|.|..+.+ +.|+.|++||+|+.+|++|+..+++||++|+|.++|....+. + ....||+++.+
T Consensus 6 ~~p~~g~~~~G~i~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~---v----~~g~~l~~i~~ 77 (81)
T 1gjx_A 6 KVPDIGGHENVDIIAVEV-NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK---I----SEGGLIVVVEA 77 (81)
T ss_dssp CCCCCSSCSSEEEEEECC-CSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE---E----CSSSCCCEECC
T ss_pred EcCCCCCCCcEEEEEEEc-CCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE---e----CCCCEEEEEEe
Confidence 344455557789999866 899999999999999999999999999999999998766443 2 23358988865
Q ss_pred C
Q 044104 103 D 103 (128)
Q Consensus 103 ~ 103 (128)
.
T Consensus 78 ~ 78 (81)
T 1gjx_A 78 E 78 (81)
T ss_dssp S
T ss_pred c
Confidence 4
No 10
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=98.58 E-value=1.1e-07 Score=61.70 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=54.4
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEECCh
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNA 105 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~~~ 105 (128)
....-|.|..+.+ +.|+.|++||+|+.||++|+..+++||++|+|..++ ...+ .+ ..+.- |+.|...++
T Consensus 9 ~a~~~G~v~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~---~V---~~G~~-l~~i~~~~~ 77 (84)
T 2kcc_A 9 RSPSAGKLTQYTV-EDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGA---VL---EAGCV-VARLELDDL 77 (84)
T ss_dssp CCSSSCCEEEESS-CTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTC---CC---CTTCC-CEEEECSCS
T ss_pred ECCCCEEEEEEEC-CCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCC---EE---CCCCE-EEEEeCCCh
Confidence 3556788988855 899999999999999999999999999999999998 5543 22 12333 777776655
No 11
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=98.52 E-value=1.2e-07 Score=61.68 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=46.4
Q ss_pred EecChhhhh-hcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 22 IGITDHAQD-HLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 22 vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.+-+.+.. .-|.|..+ +.++|+.|++||+|+.||++|+..++.||++|+|.+++...
T Consensus 8 i~~P~lg~~~~~G~v~~~-~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 66 (87)
T 3crk_C 8 VLLPALSPTMTMGTVQRW-EKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPE 66 (87)
T ss_dssp EECCCSSTTCCEEEEEEE-CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCT
T ss_pred EeCCCCCCCCCcEEEEEE-EcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECC
Confidence 444444433 23677776 45899999999999999999999999999999999987554
No 12
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=98.50 E-value=7.9e-08 Score=61.28 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=43.6
Q ss_pred hhhcCCeeEEE------cCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 29 QDHLGDVVYVE------LPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 29 ~~~lG~i~~v~------lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
....|.|..+. +.+.|+.|++||+|+.||++|+..+++||++|+|.++|-..
T Consensus 9 a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 66 (80)
T 1bdo_A 9 SPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVES 66 (80)
T ss_dssp CSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCT
T ss_pred cCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCC
Confidence 34556666552 56899999999999999999999999999999999998543
No 13
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=98.49 E-value=1.3e-07 Score=60.18 Aligned_cols=58 Identities=29% Similarity=0.367 Sum_probs=47.1
Q ss_pred EecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 22 IGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 22 vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|.+.+.+.. -|.|..+. .+.|+.|++||+|+.||+.|+..+++||++|+|.+++....
T Consensus 5 i~~p~~g~~-~G~v~~~~-v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G 62 (80)
T 1qjo_A 5 VNVPDIGGD-EVEVTEVM-VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVG 62 (80)
T ss_dssp ECCCCCSSS-CEEEEECC-CCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTT
T ss_pred EECCCCCCC-CEEEEEEE-cCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCC
Confidence 334444444 67787774 48999999999999999999999999999999999986543
No 14
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=98.47 E-value=1.1e-07 Score=60.46 Aligned_cols=49 Identities=22% Similarity=0.250 Sum_probs=42.5
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
-|.|..+.+ +.|+.|++||+|+.+|++|+..++.||++|+|.++|....
T Consensus 15 ~G~i~~~~v-~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G 63 (79)
T 1ghj_A 15 DGTVATWHK-KPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63 (79)
T ss_dssp CEEECCCSS-CTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTT
T ss_pred CEEEEEEEc-CCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCc
Confidence 456666644 7899999999999999999999999999999999986543
No 15
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=98.46 E-value=1.2e-07 Score=62.70 Aligned_cols=76 Identities=20% Similarity=0.194 Sum_probs=55.6
Q ss_pred EEecChhhhh-hcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEE
Q 044104 21 TIGITDHAQD-HLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIK 99 (128)
Q Consensus 21 ~vGit~~a~~-~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~ 99 (128)
.|.+.+.+.. .-|.|..+ +.++|+.|++||+|+.||++|+..++.||++|+|.+++....+ .+ ..+.- |++
T Consensus 6 ~i~~P~lg~~~~~G~v~~~-~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~---~V---~~G~~-l~~ 77 (93)
T 1k8m_A 6 QFKLSDIGEGIREVTVKEW-YVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD---IA---YVGKP-LVD 77 (93)
T ss_dssp EEECCSSCTTSCCEEEEEE-CCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC---EE---CTTSE-EEE
T ss_pred EEEcCCCCCCCCCEEEEEE-EcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCC---Ee---CCCCE-EEE
Confidence 3445544433 34677776 4589999999999999999999999999999999999865432 23 22333 777
Q ss_pred EEECC
Q 044104 100 VEMDN 104 (128)
Q Consensus 100 i~~~~ 104 (128)
|.+.+
T Consensus 78 i~~~~ 82 (93)
T 1k8m_A 78 IETEA 82 (93)
T ss_dssp EECSC
T ss_pred EecCC
Confidence 77654
No 16
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=98.46 E-value=3.2e-07 Score=56.98 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=42.6
Q ss_pred hcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 31 HLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 31 ~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
.-|.|..+. .+.|+.|++|++|+.|++.+...+++||++|+|.+++-..
T Consensus 6 ~~G~v~~~~-v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~ 54 (72)
T 1z6h_A 6 MAGNLWKVH-VKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKE 54 (72)
T ss_dssp SSEEEEEEC-CCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCT
T ss_pred ccEEEEEEE-cCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCC
Confidence 457777774 4789999999999999999999999999999999997543
No 17
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=98.41 E-value=1.2e-07 Score=59.98 Aligned_cols=49 Identities=29% Similarity=0.376 Sum_probs=42.8
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
-|.|..+. .+.|+.|++||+|+.||++|...+++||++|+|.++|-...
T Consensus 15 ~G~v~~~~-v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G 63 (77)
T 2l5t_A 15 EGEIVRWD-VKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG 63 (77)
T ss_dssp CEEEEECS-CCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTT
T ss_pred cEEEEEEE-eCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCc
Confidence 46677764 47999999999999999999999999999999999986553
No 18
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=98.39 E-value=6.2e-07 Score=56.41 Aligned_cols=50 Identities=28% Similarity=0.382 Sum_probs=43.4
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
...-|.|..+.+ +.|+.|++|++|+.|++.+...+++||++|+|..+|..
T Consensus 13 a~~~G~v~~~~v-~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~ 62 (77)
T 1dcz_A 13 APLAGTVSKILV-KEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVK 62 (77)
T ss_dssp BSSSCEEEEECC-CTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCC
T ss_pred CCCCEEEEEEEc-CCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecC
Confidence 445677777744 79999999999999999999999999999999998744
No 19
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=5e-07 Score=60.35 Aligned_cols=49 Identities=20% Similarity=0.279 Sum_probs=43.0
Q ss_pred cCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 32 LGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 32 lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
-|.|..+ +.++|+.|++||+|+.||++|+..++.||++|+|.+++-...
T Consensus 21 ~G~i~~~-~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G 69 (98)
T 2dnc_A 21 EGNIVKW-LKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 69 (98)
T ss_dssp EECEEEE-SSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTT
T ss_pred cEEEEEE-EcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCC
Confidence 4778877 458999999999999999999999999999999999875543
No 20
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=98.36 E-value=5.4e-07 Score=56.00 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=42.8
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
...-|.|..+. .+.|+.|++||+|+.+++.+....++||++|+|..++-.
T Consensus 10 a~~~G~v~~~~-v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~ 59 (74)
T 2d5d_A 10 APMPGKVLRVL-VRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVK 59 (74)
T ss_dssp CSSCEEEEEEC-CCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCC
T ss_pred cCCCEEEEEEE-cCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcC
Confidence 44557776664 479999999999999999999999999999999998743
No 21
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=98.32 E-value=5.2e-07 Score=57.33 Aligned_cols=47 Identities=28% Similarity=0.387 Sum_probs=40.5
Q ss_pred CeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 34 DVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 34 ~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
.|..+. .+.|+.|++||+|+.||++|+..+++||++|+|.+++-...
T Consensus 14 ~i~~~~-v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G 60 (79)
T 1iyu_A 14 EVIELL-VKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLG 60 (79)
T ss_dssp EEEEEC-CCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTT
T ss_pred EEEEEe-cCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCC
Confidence 455553 48999999999999999999999999999999999985543
No 22
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=98.30 E-value=5.7e-07 Score=61.17 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=41.1
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.|..+ +.++|+.|++||+|+.||++|+..+|.||++|+|.+++-..
T Consensus 22 G~v~~~-~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~ 68 (108)
T 2dne_A 22 GTIARW-EKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAE 68 (108)
T ss_dssp EEEEEC-SSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCT
T ss_pred EEEEEE-EcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCC
Confidence 566666 35899999999999999999999999999999999987544
No 23
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=98.28 E-value=9.3e-07 Score=62.07 Aligned_cols=64 Identities=17% Similarity=0.168 Sum_probs=49.0
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEEC
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMD 103 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~ 103 (128)
|.|..+ +.++|+.|++||+|+.||++|+..+|.||.+|+|.+++....+. .+ ..++- |+.|...
T Consensus 42 G~V~~~-~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~--~V---~~G~~-L~~i~~~ 105 (128)
T 1y8o_B 42 GTVQRW-EKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTR--DV---PLGTP-LCIIVEK 105 (128)
T ss_dssp EEEEEE-CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCC--SE---ETTCE-EEEEESS
T ss_pred EEEEEE-ecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCe--ee---cCCCE-EEEEecC
Confidence 667776 45899999999999999999999999999999999997554321 22 22333 7777653
No 24
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=98.21 E-value=4.2e-07 Score=60.05 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=24.9
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
...-|.|..+.+ +.|+.|++||+|+.||++|+..+++||++|+|.+++...
T Consensus 30 a~~~G~v~~~~v-~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~ 80 (94)
T 2jku_A 30 SPMPGVVVAVSV-KPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQA 80 (94)
T ss_dssp CSSSCEEEEECC-CTTCCCCTTCCCEEEEC----------------------
T ss_pred CCCCEEEEEEEC-CCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCC
Confidence 345788888854 799999999999999999999999999999999987544
No 25
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2.1e-06 Score=57.14 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=52.8
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEECCh
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNA 105 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~~~ 105 (128)
....-|.|..+ +.+.|+.|++||+|+.+|++|+..+++||++|+|. ++-.. -+.++. + ..|++|.+.++
T Consensus 21 ~a~~~G~v~~~-~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~---G~~V~~---G-~~l~~i~~~~~ 89 (100)
T 2dn8_A 21 RSPSAGKLTQY-TVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRP---GAVLEA---G-CVVARLELDDP 89 (100)
T ss_dssp ECSSCEEEEEE-SSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCT---TCEECS---S-CEEEEECCSCS
T ss_pred eCCCCEEEEEE-EcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCC---CCEECC---C-CEEEEEEcCCc
Confidence 34566778777 45899999999999999999999999999999999 76432 233422 3 36888876554
No 26
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=98.20 E-value=1.8e-06 Score=57.38 Aligned_cols=68 Identities=21% Similarity=0.207 Sum_probs=52.5
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEECC
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDN 104 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~~ 104 (128)
...-|.|..+. .+.|+.|++||+|+.|++.|+..+++||++|+|..++....+ .++ .+ ..|++|...+
T Consensus 19 a~~~G~v~~~~-v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~---~V~---~G-~~L~~i~~~~ 86 (99)
T 2ejm_A 19 APMTGTIEKVF-VKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA---QAN---RH-TPLVEFEEEE 86 (99)
T ss_dssp CSSSEEEEEEC-CCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE---EEC---TT-CBCEEECCCC
T ss_pred cCCCEEEEEEE-CCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC---EEC---CC-CEEEEEECCC
Confidence 34557777774 479999999999999999999999999999999998854432 232 23 3688886654
No 27
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=98.20 E-value=9.2e-08 Score=61.94 Aligned_cols=63 Identities=29% Similarity=0.346 Sum_probs=50.5
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEEC
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMD 103 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~ 103 (128)
|.|..+. .+.|+.|++||+|+.||++|+..+|+||++|+|.++|....+ .++ .+. =|+.|...
T Consensus 11 G~v~~~~-v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~---~V~---~G~-~l~~i~~~ 73 (85)
T 2k7v_A 11 VEVTEVM-VKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD---KVK---TGS-LIMIFEVE 73 (85)
T ss_dssp CCCCSCC-CSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC---CBC---TTS-EEEEEECC
T ss_pred EEEEEEE-cCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC---EEC---CCC-EEEEEEcC
Confidence 8888884 489999999999999999999999999999999999876643 222 132 36767654
No 28
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=98.11 E-value=8.8e-08 Score=61.29 Aligned_cols=47 Identities=21% Similarity=0.196 Sum_probs=40.6
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.|..+ +.++|+.|++||+|+.||++|+..++.||++|+|.+++...
T Consensus 17 G~v~~~-~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~ 63 (80)
T 1pmr_A 17 ATVATW-HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63 (80)
T ss_dssp EECCBC-CCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCT
T ss_pred EEEEEE-ECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCC
Confidence 455555 34789999999999999999999999999999999987554
No 29
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.04 E-value=5.8e-06 Score=71.54 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=44.2
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
.+-|+|+.+ +.++|++|++||+|++||++|+..+|.||.+|+|.+++-+..
T Consensus 618 p~~G~v~~~-~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G 668 (681)
T 3n6r_A 618 PMPGLIVKV-DVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAG 668 (681)
T ss_dssp CSCEEEEEE-CCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTT
T ss_pred CCcEEEEEE-EeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCc
Confidence 355777766 459999999999999999999999999999999999975543
No 30
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.86 E-value=4.2e-06 Score=72.36 Aligned_cols=73 Identities=23% Similarity=0.315 Sum_probs=10.6
Q ss_pred CCceEEEEeCCEEEEecCh--------------hhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEE
Q 044104 8 DSHEWVKVDGNSATIGITD--------------HAQDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKV 73 (128)
Q Consensus 8 ~~h~Wv~~~~~~~~vGit~--------------~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V 73 (128)
.++.|+...+..+++-..+ ....+-|+|+.+ +.++|+.|++||+|+.||++|+..+|.||.+|+|
T Consensus 572 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~v~ap~~G~v~~~-~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v 650 (675)
T 3u9t_A 572 GRQLFLEWEGELLAIEAVDPIAEAEAAHAHQGGLSAPMNGSIVRV-LVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVV 650 (675)
T ss_dssp TTEEEEECSSSEEEEEECCHHHHHC-------------------------------------------------------
T ss_pred CCEEEEEECCeEEEEEEcCcccccccccCCCCeEECCCCEEEEEE-EeCCCCEEcCCCEEEEEEecceeEEEECCCCeEE
Confidence 3456776666655554422 234567888887 4599999999999999999999999999999999
Q ss_pred EEEehhhh
Q 044104 74 VEVNEELS 81 (128)
Q Consensus 74 ~~vN~~l~ 81 (128)
.+++.+..
T Consensus 651 ~~i~~~~G 658 (675)
T 3u9t_A 651 KALYCSEG 658 (675)
T ss_dssp --------
T ss_pred EEEEeCCc
Confidence 99875544
No 31
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.78 E-value=2.4e-05 Score=71.83 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=45.3
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
..+.|+|+.+ +.++|+.|++||+|+.||++|+..+|.||++|+|.++.-+-
T Consensus 1172 ap~~G~v~~~-~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~ 1222 (1236)
T 3va7_A 1172 SEYTGRFWKP-VAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKN 1222 (1236)
T ss_dssp CSSCEEEEEE-SSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCT
T ss_pred CCCcEEEEEE-EcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCC
Confidence 4466888887 56999999999999999999999999999999999997553
No 32
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=97.68 E-value=3.6e-05 Score=70.16 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=44.2
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
.+-|.|+.+ +.++|+.|++||+|++||++|+..+|.||++|+|.+++.+..
T Consensus 1083 p~~G~v~~~-~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G 1133 (1150)
T 3hbl_A 1083 QMPGSVTEV-KVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNG 1133 (1150)
T ss_dssp SSSEEEEEE-CCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTT
T ss_pred CceEEEEEE-EeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCC
Confidence 355677766 459999999999999999999999999999999999976544
No 33
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=97.62 E-value=3.8e-05 Score=51.78 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=48.6
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEEEccccc-----------------------------eeecCcceEEEEEehhh
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVESVKATS-----------------------------DVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~-----------------------------~i~sPvsG~V~~vN~~l 80 (128)
..-|.|..+. ...|+.|++|++|+.|++.++.. .|+||++|.|..++...
T Consensus 7 ~~~G~V~~v~-v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~ 85 (116)
T 2k32_A 7 QVSGVIVNKL-FKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNI 85 (116)
T ss_dssp SSCEEEEEEC-SCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCT
T ss_pred cCCEEEEEEE-CCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCC
Confidence 3457777774 47999999999999999875443 89999999999987543
Q ss_pred hcCCCcccCCCCCCCcEEEEEECC
Q 044104 81 SSSPALVNSSPYEDGWIIKVEMDN 104 (128)
Q Consensus 81 ~~~P~lln~dpy~~gWl~~i~~~~ 104 (128)
.+ .+.. |..-|+.|.+.+
T Consensus 86 G~---~v~~---g~~~l~~i~~~~ 103 (116)
T 2k32_A 86 GD---YVSA---STTELVRVTNLN 103 (116)
T ss_dssp TC---EECT---TTSCCEEEECSC
T ss_pred CC---EEcC---CCcEEEEEECCC
Confidence 32 2321 212477776654
No 34
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=97.49 E-value=1.5e-05 Score=60.86 Aligned_cols=48 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|.|..+. .++|+.|++||+|+.||++|+..+|.||.+|+|.++.-...
T Consensus 18 G~I~~w~-vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G 65 (229)
T 1zy8_K 18 GNIVKWL-KKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEG 65 (229)
T ss_dssp -------------------------------------------------
T ss_pred EEEEEEe-cCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCC
Confidence 5677763 48999999999999999999999999999999988765443
No 35
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=97.46 E-value=1.7e-05 Score=65.33 Aligned_cols=48 Identities=31% Similarity=0.441 Sum_probs=0.0
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|+|+.+ +.++|+.|++||+|+.||++|+..+|.||.+|+|.++.....
T Consensus 17 g~i~~w-~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G 64 (428)
T 3dva_I 17 GEIVKW-FVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64 (428)
T ss_dssp -------------------------------------------------
T ss_pred EEEEEE-EcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCC
Confidence 667666 459999999999999999999999999999999998876544
No 36
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=97.20 E-value=7.9e-05 Score=65.07 Aligned_cols=48 Identities=23% Similarity=0.344 Sum_probs=41.2
Q ss_pred hcCCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 31 HLGDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 31 ~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
+-|.|..+ +.++|+.|++||++++||++|+..+|.||++|+|.+++..
T Consensus 656 ~~G~V~~v-~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~ 703 (718)
T 3bg3_A 656 MPGKVIDI-KVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVT 703 (718)
T ss_dssp SCEEEEEE-CSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCC
T ss_pred CCeEEEEE-EeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecC
Confidence 34566666 3488999999999999999999999999999999987644
No 37
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=97.11 E-value=0.00017 Score=65.89 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=34.6
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEEL 80 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l 80 (128)
|.|..+ ..++|+.|++||++++||++|+..++.||.+|+|.+++...
T Consensus 1104 G~v~~~-~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~ 1150 (1165)
T 2qf7_A 1104 GVISRV-FVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKA 1150 (1165)
T ss_dssp EEEEEE-CCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCS
T ss_pred eEEEEE-EcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCC
Confidence 445555 35789999999999999999999999999999999987554
No 38
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=97.01 E-value=0.0014 Score=47.71 Aligned_cols=46 Identities=39% Similarity=0.496 Sum_probs=38.7
Q ss_pred CCeeEEEcCCCCcEecCCCeEEEEEEccc-cceeecCcceEEEEEehh
Q 044104 33 GDVVYVELPEVGVTVKQDASFGAVESVKA-TSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 33 G~i~~v~lp~~G~~v~~g~~l~~iEs~k~-~~~i~sPvsG~V~~vN~~ 79 (128)
|-.+++ ....|++|.+|+.++.|.+.|. +.-++||++|+|+.+|+.
T Consensus 109 G~~V~~-i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 109 GYKVYP-IMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp SSEEEE-CCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred ceEEEE-EcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 444444 5689999999999999999885 667999999999999864
No 39
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=96.03 E-value=0.0066 Score=49.07 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=42.6
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc-----------------------------------------------
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVESVK----------------------------------------------- 60 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k----------------------------------------------- 60 (128)
....-|.|..+.+.+.|+.|++||+|++|.+..
T Consensus 125 ~a~~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~ 204 (413)
T 3ne5_B 125 QARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKI 204 (413)
T ss_dssp CCSSCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSC
T ss_pred ecccCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccc
Confidence 345567888776558999999999999999521
Q ss_pred -ccceeecCcceEEEEEehhhhc
Q 044104 61 -ATSDVNSPVSGKVVEVNEELSS 82 (128)
Q Consensus 61 -~~~~i~sPvsG~V~~vN~~l~~ 82 (128)
.-..|+||++|.|.++|-...+
T Consensus 205 ~~~~~I~AP~~G~V~~~~v~~G~ 227 (413)
T 3ne5_B 205 QTRFTLKAPIDGVITAFDLRAGM 227 (413)
T ss_dssp CCEEEEECSSSEEEEECCCCTTC
T ss_pred cccEEEEcCCCeEEEEEEcCCCC
Confidence 1247999999999999865443
No 40
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=95.84 E-value=0.0065 Score=47.18 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=25.1
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
...-|.|..+.+ ..|+.|++||+|+.|.+.
T Consensus 36 ~~~~G~V~~v~v-~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 36 AQVSGQLKTLSV-AIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp CSSCEEEEEECC-CTTCEECTTCEEEEECCH
T ss_pred ccCCcEEEEEEe-CCCCEECCCCEEEEEChH
Confidence 445688888864 799999999999999874
No 41
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=95.78 E-value=0.018 Score=45.59 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=34.8
Q ss_pred cCCCCcEecCCCeEEEEEEc----cccceeecCcceEEEEEeh
Q 044104 40 LPEVGVTVKQDASFGAVESV----KATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~----k~~~~i~sPvsG~V~~vN~ 78 (128)
..+.|+.|++||.|+.|... ....+++||.+|.|+..+.
T Consensus 271 ~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~ 313 (331)
T 3na6_A 271 MIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF 313 (331)
T ss_dssp SSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC
T ss_pred cCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC
Confidence 46899999999999999984 4578999999999999975
No 42
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=95.57 E-value=0.0098 Score=46.48 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=25.6
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
....-|.|..+. ...|+.|++|++|+.|.+..
T Consensus 61 ~~~~~G~V~~v~-v~~G~~V~kGq~L~~ld~~~ 92 (359)
T 3lnn_A 61 LPPLAGRIVSLN-KQLGDEVKAGDVLFTIDSAD 92 (359)
T ss_dssp CCSSCEEEEECC-SCTTCEECTTCEEEEEECSS
T ss_pred eccCCEEEEEEE-cCCCCEEcCCCEEEEEChHH
Confidence 345567887774 48999999999999999853
No 43
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=95.54 E-value=0.0039 Score=47.18 Aligned_cols=30 Identities=10% Similarity=0.209 Sum_probs=25.2
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
...-|.|..+.+ ..|+.|++||+|++|++.
T Consensus 27 a~~~G~V~~v~v-~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 27 PQVSGIILKRNF-KEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp CSSCEEEEEECS-CTTCEECTTSCSEEECCH
T ss_pred ccccEEEEEEEc-CCCCEecCCCEEEEECcH
Confidence 456688888854 899999999999999874
No 44
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=95.40 E-value=0.022 Score=45.82 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=42.4
Q ss_pred cCCCCcEecCCCeEEEEEE------ccccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEE
Q 044104 40 LPEVGVTVKQDASFGAVES------VKATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEM 102 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs------~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~ 102 (128)
..+.|+.|++||+|+.|.. .....+++||.+|.|...+..-.- +...++++|-.
T Consensus 304 ~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~~p~V---------~~G~~l~~i~~ 363 (368)
T 3fmc_A 304 LGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASASV---------HQGTELYKVMT 363 (368)
T ss_dssp CSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSEE---------CTTCEEEEEEE
T ss_pred eCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeCCCcc---------CCCCEEEEEee
Confidence 4689999999999999999 457789999999999999755332 12247777743
No 45
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=95.29 E-value=0.032 Score=44.37 Aligned_cols=38 Identities=18% Similarity=0.047 Sum_probs=34.2
Q ss_pred CCCCcEecCCCeEEEEEE----ccccceeecCcceEEEEEeh
Q 044104 41 PEVGVTVKQDASFGAVES----VKATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs----~k~~~~i~sPvsG~V~~vN~ 78 (128)
.+.|+.|++||+|+.|++ .+...++.||.+|.|+..+.
T Consensus 282 ~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~~ 323 (354)
T 3cdx_A 282 HYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAG 323 (354)
T ss_dssp CCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEEC
T ss_pred CCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEeC
Confidence 468999999999999998 47788999999999999873
No 46
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=94.86 E-value=0.0097 Score=47.16 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=24.4
Q ss_pred hhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 29 QDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 29 ~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
...-|.|..+. ...|+.|++||+|++|.+.
T Consensus 48 a~v~G~V~~v~-v~~Gd~V~kGq~L~~ld~~ 77 (369)
T 1vf7_A 48 PQVNGIILKRL-FKEGSDVKAGQQLYQIDPA 77 (369)
T ss_dssp CSSCEEEEECC-SCSSEEECTTSEEEEECCH
T ss_pred eeCceEEEEEE-cCCCCEEcCCCEEEEECcH
Confidence 34568888774 4899999999999999864
No 47
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=93.47 E-value=0.0092 Score=46.74 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=25.7
Q ss_pred hhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 28 AQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 28 a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
....-|.|..+.+ +.|+.|++||+|+.|.+.
T Consensus 36 ~~~~~G~V~~v~v-~~G~~V~~Gq~L~~ld~~ 66 (369)
T 4dk0_A 36 GAQVSGKITKLYV-KLGQQVKKGDLLAEIDST 66 (369)
T ss_dssp CCCSCSBCCEECC-CTTSCCCSSCCCEECCCH
T ss_pred ecCCCcEEEEEEE-CCCCEECCCCEEEEEcCH
Confidence 3456688888854 799999999999999875
No 48
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=93.38 E-value=0.16 Score=39.76 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=34.8
Q ss_pred EcCCCCcEecCCCeEEEEEE----ccccceeecCcceEEEEEeh
Q 044104 39 ELPEVGVTVKQDASFGAVES----VKATSDVNSPVSGKVVEVNE 78 (128)
Q Consensus 39 ~lp~~G~~v~~g~~l~~iEs----~k~~~~i~sPvsG~V~~vN~ 78 (128)
.....|+.|++|+.|+.+.. +....+++||.+|.|...+.
T Consensus 270 ~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~~ 313 (332)
T 2qj8_A 270 PRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRS 313 (332)
T ss_dssp ECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEEC
T ss_pred EeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEeC
Confidence 45578999999999999977 45778999999999999974
No 49
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=85.87 E-value=0.75 Score=33.63 Aligned_cols=38 Identities=21% Similarity=0.025 Sum_probs=32.6
Q ss_pred cCCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehh
Q 044104 40 LPEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~ 79 (128)
+...|+.|++|+.|+ |+.....+|.|.++|+|...|-.
T Consensus 65 ~V~dG~~V~~G~~la--ewDp~t~pIisE~~G~V~f~dii 102 (190)
T 2auk_A 65 AKGDGEQVAGGETVA--NWDPHTMPVITEVSGFVRFTDMI 102 (190)
T ss_dssp SSCTTCEECTTCEEE--ECCSSEEEEECSSCEEEEEESCC
T ss_pred EecCCCEEcCCCEEE--EEcCcCCcEEeccccEEEEEecc
Confidence 348999999999988 55778899999999999988743
No 50
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=77.18 E-value=3 Score=29.47 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=28.5
Q ss_pred EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 19 SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 19 ~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
.+.|||+....+ |+=..+ ..+.|++|++||+|+++-...
T Consensus 76 LiHiGidTv~l~--G~gF~~-~V~~Gd~V~~G~~L~~~d~~~ 114 (154)
T 2gpr_A 76 LLHIGLDTVSLD--GNGFES-FVTQDQEVNAGDKLVTVDLKS 114 (154)
T ss_dssp EEECSSSGGGGT--TCSEEE-CCCTTCEECTTCEEEEECHHH
T ss_pred EEEECcchhhcC--CCceEE-EEcCCCEEcCCCEEEEECHHH
Confidence 578898887655 433322 469999999999999986543
No 51
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=76.26 E-value=3.6 Score=29.34 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCc-eEEEEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 8 DSH-EWVKVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 8 ~~h-~Wv~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
..| .-++.+++ .+.|||+....+=-| . --+.+.|++|++||+|+.+-..
T Consensus 66 t~hAigi~t~~G~evLiHiGidTV~l~G~g--F-~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 66 TNHAFSIESDSGVELFVHFGIDTVELKGEG--F-KRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp TSSEEEEEETTSCEEEEECSBSGGGGTTTT--E-EECSCTTCEECTTCEEEEECHH
T ss_pred CCeEEEEEeCCCCEEEEEECccchhcCCCc--c-EEEEeCcCEECCCCEEEEECHH
Confidence 345 33444444 578898887655433 2 2356999999999999998653
No 52
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=75.81 E-value=1.8 Score=30.99 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=19.7
Q ss_pred CCeEEEEEEccccceeecCcceEEEEEe
Q 044104 50 DASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 50 g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
|+-++...+. ..++||++|+|..+-
T Consensus 40 G~Giai~p~~---~~v~AP~~G~V~~v~ 64 (161)
T 1f3z_A 40 GDGIAIKPTG---NKMVAPVDGTIGKIF 64 (161)
T ss_dssp CEEEEEEECS---SEEECSSSEEEEEEC
T ss_pred eCeEEEEeCC---CcEECCCCeEEEEEc
Confidence 5666666654 578999999999995
No 53
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=74.87 E-value=1.3 Score=31.42 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=19.2
Q ss_pred CCeEEEEEEccccceeecCcceEEEEEe
Q 044104 50 DASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 50 g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
|+-++...+. ..++||++|+|..+-
T Consensus 35 G~Giai~p~~---~~v~AP~~G~V~~v~ 59 (154)
T 2gpr_A 35 GDGFAINPKS---NDFHAPVSGKLVTAF 59 (154)
T ss_dssp CEEEEEEESS---SEEECSSCEEEEECC
T ss_pred eCeEEEEeCC---CcEECCCCeEEEEEc
Confidence 5556655553 589999999999985
No 54
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=72.18 E-value=1.9 Score=30.82 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=19.1
Q ss_pred CCeEEEEEEccccceeecCcceEEEEEe
Q 044104 50 DASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 50 g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
|+-++...+ ...++||++|+|..+-
T Consensus 40 G~Giai~p~---~~~v~AP~~G~V~~v~ 64 (162)
T 1ax3_A 40 GDGFAILPS---EGIVVSPVRGKILNVF 64 (162)
T ss_dssp SEEEEEEEC---SSEEEESCCEEEEECC
T ss_pred eceEEEEeC---CCcEECCCCeEEEEEc
Confidence 566666555 4578999999999984
No 55
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.08 E-value=1.2 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=25.7
Q ss_pred CCeEEEEEEccccceeecCcceEEEEEehhhh
Q 044104 50 DASFGAVESVKATSDVNSPVSGKVVEVNEELS 81 (128)
Q Consensus 50 g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~ 81 (128)
|...|.++..+....+.||++|+|.+++.+..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~G 36 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDG 36 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTT
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCc
Confidence 34457778888888999999999999976543
No 56
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=70.75 E-value=3.9 Score=30.13 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=30.5
Q ss_pred CCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCC
Q 044104 41 PEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSS 90 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~d 90 (128)
...|+.|++|+.|| |+. +|.|-++|+|++.-. + |.+.-.|
T Consensus 25 V~dG~~VkkG~~la--eWD----PIitE~~G~V~d~k~-l---P~I~I~d 64 (193)
T 2xha_A 25 VNNGKDVNKGDLIA--EEP----PIYARRSGVIVDVKN-V---RKIVVET 64 (193)
T ss_dssp CCTTCEECTTCEEE--EEC----CEECSSCEEEEEEEE-E---EEEEEEC
T ss_pred ECCCCEEcCCCEEE--EeC----cEEEccCEEEEeecc-C---cEEEEEc
Confidence 48999999999998 444 999999999976544 2 6554434
No 57
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=70.50 E-value=3.5 Score=30.14 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.8
Q ss_pred ceeecCcceEEEEEeh
Q 044104 63 SDVNSPVSGKVVEVNE 78 (128)
Q Consensus 63 ~~i~sPvsG~V~~vN~ 78 (128)
..++||++|+|+.+-+
T Consensus 72 g~v~AP~dG~V~~vfp 87 (183)
T 3our_B 72 NKMVAPVNGTIGKIFE 87 (183)
T ss_dssp SEEECSSSEEEEEECT
T ss_pred CEEEeCCCeEEEEECC
Confidence 4799999999999853
No 58
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=69.44 E-value=6.4 Score=28.76 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=35.5
Q ss_pred cCCCceE-EEEeCC---EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 6 YADSHEW-VKVDGN---SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 6 y~~~h~W-v~~~~~---~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
|...|-- ++.+++ .+.|||+....+ |+-... +.+.|++|++||+|+.+--..
T Consensus 86 fpT~HAigi~s~~G~EvLIHIGiDTV~L~--G~gF~~-~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 86 FETNHAFSIESDDGVELFVHFGIDTVELK--GEGFTR-IAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp CTTSSEEEEEETTSCEEEEECSBSGGGGT--TTTEEE-CSCTTCEECTTCEEEEECHHH
T ss_pred CCCCCEEEEEeCCCCEEEEEecccccccC--CccceE-EEeCcCEEcCCCEEEEECHHH
Confidence 4445643 344445 589999987544 554333 569999999999999996543
No 59
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=69.08 E-value=2.9 Score=29.89 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=28.1
Q ss_pred EEEEecChhhhhhcCCeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 19 SATIGITDHAQDHLGDVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 19 ~~~vGit~~a~~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
.+.|||+....+ |+=. --+.+.|++|++||+|+.+--..
T Consensus 81 LiHIGidTV~l~--G~gF-~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 81 LIHFGIDTVSLK--GEGF-TSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp EEECSSSTTTTT--TTTE-EESCCCCSEECSEEEEEEECHHH
T ss_pred EEEECccchhcC--CCcc-EEEEeCCCEEcCCCEEEEECHHH
Confidence 578898876554 4322 23569999999999999986543
No 60
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=68.21 E-value=2.9 Score=25.36 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=21.0
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
..-|.|..+. ...|+.+..|++|+.|+
T Consensus 54 p~~G~v~~~~-v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 54 DKSGTVKAIL-VESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SSCEEEEEEC-SCTTCEECTTCEEEEEC
T ss_pred CCCEEEEEEE-cCCCCEECCCCEEEEEC
Confidence 3457777664 47899999999999874
No 61
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=63.44 E-value=5.5 Score=23.87 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=20.5
Q ss_pred hcCCeeEEEcCCCCcEecCCCeEEEEE
Q 044104 31 HLGDVVYVELPEVGVTVKQDASFGAVE 57 (128)
Q Consensus 31 ~lG~i~~v~lp~~G~~v~~g~~l~~iE 57 (128)
.-|.|..+. ...|+.+..|++|++|+
T Consensus 51 ~~G~v~~~~-v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 51 VRGKIVKIL-YREGQVVPVGSTLLQID 76 (77)
T ss_dssp CCEEEEEEC-CCTTCEECSCSEEEEEE
T ss_pred CCEEEEEEE-eCCcCEECCCCEEEEEE
Confidence 456676664 47899999999999986
No 62
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=62.35 E-value=6.4 Score=23.71 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=22.9
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
..-|.|..+. ...|+.+..|++|++|+..
T Consensus 47 p~~G~v~~~~-v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 47 PKAGVVKSVS-VKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp SSSSEEEEES-CCTTCEEETTSEEEEEECC
T ss_pred CCCEEEEEEE-eCCCCEECCCCEEEEEecC
Confidence 3457777664 4789999999999999864
No 63
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=57.66 E-value=4.2 Score=32.00 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=28.1
Q ss_pred CCCCcEecCCCeEEEEEEccccceeecCcceEEEEEe
Q 044104 41 PEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
.+.|+.|++|++|+.+-. .++.+|.+|.++...
T Consensus 281 ~~~g~~V~~G~~La~i~d----~~v~a~~dG~~i~~p 313 (350)
T 2bco_A 281 VENFTSFVHGEVFGHDGD----KPLMAKNDNEAIVFP 313 (350)
T ss_dssp CCBTEECCTTCEEEEETT----EEEECSSSSCEEESC
T ss_pred ccCCCEeCCCCEEEEECC----EEEEeCCCCEEEEec
Confidence 378999999999999954 789999999977654
No 64
>1yw4_A Succinylglutamate desuccinylase; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.00A {Chromobacterium violaceum} SCOP: c.56.5.7
Probab=56.78 E-value=1.7 Score=34.22 Aligned_cols=38 Identities=8% Similarity=-0.011 Sum_probs=27.7
Q ss_pred CCCcEecCCCeEEEEEEcc-----ccceeecCcceEEEEEehh
Q 044104 42 EVGVTVKQDASFGAVESVK-----ATSDVNSPVSGKVVEVNEE 79 (128)
Q Consensus 42 ~~G~~v~~g~~l~~iEs~k-----~~~~i~sPvsG~V~~vN~~ 79 (128)
..|+.|++|++|+.+-... ....+.+|.+|.|...+..
T Consensus 280 ~~g~~V~~G~~La~i~d~~~~~g~~~~~i~aP~~Gvv~g~r~~ 322 (341)
T 1yw4_A 280 ENFTLLPDGMLIAEDGAVRYQATGGEERILFPNPAVKPGLRAG 322 (341)
T ss_dssp CBTEECCSSCCCC--------CCSSCCEEESCCTTCCSSSEEE
T ss_pred CCcCEeCCCCEEEEECCCceEeCCCceEEEeCCCCceeeeccc
Confidence 7899999999999987652 4567999999999887654
No 65
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=47.92 E-value=14 Score=29.49 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=30.5
Q ss_pred CCCCcEecCCCeEEEEEEccccceeecCcceEEEEEehhhhcCCCcccCC
Q 044104 41 PEVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVNEELSSSPALVNSS 90 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN~~l~~~P~lln~d 90 (128)
...|+.|++|+.||.-- +|.|-++|+|++.-.. -.|.+.-.|
T Consensus 65 v~~g~~V~~g~~la~wd------pii~e~~G~v~~~~~~--~~p~i~i~d 106 (352)
T 2xhc_A 65 VNNGKDVNKGDLIAEEP------PIYARRSGVIVDVKNV--RKIVVETID 106 (352)
T ss_dssp CCTTCEECTTCEEEEEC------CEECSSCEEEEEEEEE--EEEEEECTT
T ss_pred ecCCCEEcCCCEEEEec------cEEEecceEEEeeccC--CceEEEEEc
Confidence 48999999999988655 9999999999655431 335444333
No 66
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=47.49 E-value=7.7 Score=28.55 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=25.8
Q ss_pred CCCcEecCCCeEEEEEEccccceeecCcceEEEEEe
Q 044104 42 EVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 42 ~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
..|++|++|+.|+ .-..+.|.++|+|..-.
T Consensus 86 ~dG~~V~~GdvLA------Kd~AIiaEIdG~V~fgk 115 (193)
T 2xha_A 86 RVGTKVKQGLPLS------KNEEYICELDGKIVEIE 115 (193)
T ss_dssp CTTCEECTTSBSS------TTSCSBCCSSEEEEEEE
T ss_pred CCCCEEcCCCEEe------cCCeEEEccceEEEECC
Confidence 6799999999999 45778999999998754
No 67
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=43.05 E-value=11 Score=30.03 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=26.0
Q ss_pred CCCcEecCCCeEEEEEEccccceeecCcceEEEEEe
Q 044104 42 EVGVTVKQDASFGAVESVKATSDVNSPVSGKVVEVN 77 (128)
Q Consensus 42 ~~G~~v~~g~~l~~iEs~k~~~~i~sPvsG~V~~vN 77 (128)
+.|++|++|+.|+ .-..+.|.++|+|.--.
T Consensus 126 ~~g~~v~~G~vla------k~~aiiaeidG~V~fg~ 155 (352)
T 2xhc_A 126 RVGTKVKQGLPLS------KNEEYICELDGKIVEIE 155 (352)
T ss_dssp CTTCEECTTCBSB------SSSSCBCCSCEEEEEEE
T ss_pred CCCCEEccCcEEe------cCceEEeccceEEEECC
Confidence 6799999999999 46789999999998654
No 68
>1m1f_A KID toxin protein; toxin-antitoxin, plasmid maintenance, post segregational killing, DNA replication, mutational analysis, CCDB; 1.40A {Escherichia coli} SCOP: b.34.6.2 PDB: 2c06_A
Probab=40.08 E-value=10 Score=24.34 Aligned_cols=41 Identities=22% Similarity=0.255 Sum_probs=29.3
Q ss_pred cCCeeEEEc-CCCCcEecCCCeEEEEEEccc----cceeecCcceE
Q 044104 32 LGDVVYVEL-PEVGVTVKQDASFGAVESVKA----TSDVNSPVSGK 72 (128)
Q Consensus 32 lG~i~~v~l-p~~G~~v~~g~~l~~iEs~k~----~~~i~sPvsG~ 72 (128)
-|+|+.++| |..|.+..+-.|+.+|..... -.-+.+|++..
T Consensus 3 rGdI~~v~~~p~~g~E~~k~RP~lVvs~~~~n~~~~~viv~piTs~ 48 (110)
T 1m1f_A 3 RGEIWLVSLDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTSG 48 (110)
T ss_dssp TTEEEEEECCSCCTTSCCSEEEEEECSCHHHHHHHSCCEEEEEEC-
T ss_pred ccEEEEEECCCCCCcccCCcccEEEEecccccccCCeEEEEEeccc
Confidence 389999999 888988888888888865421 23356666654
No 69
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=39.72 E-value=25 Score=29.15 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.2
Q ss_pred EcCCCCcEecCCCeEEEEEEcc
Q 044104 39 ELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 39 ~lp~~G~~v~~g~~l~~iEs~k 60 (128)
-..++|++|++|++|++|-+..
T Consensus 415 l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 415 LLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp ECSCTTCEECTTCEEEEEEESS
T ss_pred EEccCCCEECCCCeEEEEEcCC
Confidence 3479999999999999998864
No 70
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=39.38 E-value=21 Score=29.16 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.8
Q ss_pred cCCCCcEecCCCeEEEEEEcc
Q 044104 40 LPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k 60 (128)
..++|++|++||+|++|-+..
T Consensus 381 ~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 381 HKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp SCCTTCEECTTCEEEEEEESS
T ss_pred eccCCCEECCCCeEEEEEcCC
Confidence 478999999999999998864
No 71
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=38.56 E-value=22 Score=29.04 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=18.7
Q ss_pred cCCCCcEecCCCeEEEEEEcc
Q 044104 40 LPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 40 lp~~G~~v~~g~~l~~iEs~k 60 (128)
..++|++|++||+|++|-+..
T Consensus 373 ~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 373 LKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp SCCTTCEECTTSEEEEEEECS
T ss_pred eccCCCEeCCCCeEEEEEeCC
Confidence 468999999999999998864
No 72
>1ub4_A MAZF protein; toxin, antidote, programmed cell death, post-segregation, AD module, structural genomics, PSI; 1.70A {Escherichia coli} SCOP: b.34.6.2 PDB: 3nfc_A
Probab=34.86 E-value=13 Score=23.96 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=22.8
Q ss_pred cCCeeEEEc-CCCCcEecCCCeEEEEEEccc----cceeecCcceE
Q 044104 32 LGDVVYVEL-PEVGVTVKQDASFGAVESVKA----TSDVNSPVSGK 72 (128)
Q Consensus 32 lG~i~~v~l-p~~G~~v~~g~~l~~iEs~k~----~~~i~sPvsG~ 72 (128)
-|+|+.++| |..|.+..+-.|+.+|..... -.-+.+|++..
T Consensus 8 rGdI~~v~~~p~~g~E~~k~RP~lVvs~~~~n~~~~~viv~piTs~ 53 (110)
T 1ub4_A 8 MGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQ 53 (110)
T ss_dssp TTEEEEEECCC-------CEEEEEECSCHHHHHHHSCEEEEEEESC
T ss_pred cCeEEEEECCCCCCcccCCcCcEEEEecCcccccCCeEEEEEeecc
Confidence 499999999 788988888888888865421 12345565543
No 73
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=32.68 E-value=50 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=27.1
Q ss_pred EEEecChhh--hhhcCCeeEEE-cCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDHA--QDHLGDVVYVE-LPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~a--~~~lG~i~~v~-lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+.-.. .+.+| ..++ +.+.|+.+++|+++++|++.
T Consensus 55 v~aG~~~~~~~f~~~~--~~v~~~~~dG~~v~~g~~v~~i~G~ 95 (285)
T 1o4u_A 55 VASGIEVSRMFLEKMG--LLSKFNVEDGEYLEGTGVIGEIEGN 95 (285)
T ss_dssp ECCSHHHHHHHHHHTT--CEEEESCCTTCEEESCEEEEEEEEE
T ss_pred EEEcHHHHHHHHHHcC--CEEEEEcCCCCCcCCCCEEEEEEEc
Confidence 333654432 45566 4454 57899999999999999996
No 74
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=32.41 E-value=21 Score=29.20 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=19.8
Q ss_pred EEc-CCCCcEecCCCeEEEEEEcc
Q 044104 38 VEL-PEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 38 v~l-p~~G~~v~~g~~l~~iEs~k 60 (128)
|.+ .++|++|++||+|++|-+..
T Consensus 383 i~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 383 FTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp EESCCCTTCEEBTTBCSEEEEESS
T ss_pred eeEeccCCCEECCCCeEEEEecCC
Confidence 444 68999999999999998864
No 75
>1ne8_A Conserved hypothetical protein YDCE; structural genomics, NEW YORK SGX research center for structural genomics, PSI; HET: 1PG; 2.10A {Bacillus subtilis} SCOP: b.34.6.2
Probab=31.87 E-value=17 Score=23.48 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=22.6
Q ss_pred cCCeeEEEc-CCCCcEecCCCeEEEEEEc
Q 044104 32 LGDVVYVEL-PEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 32 lG~i~~v~l-p~~G~~v~~g~~l~~iEs~ 59 (128)
-|+|+.++| |..|.+..+-.|+.+|...
T Consensus 6 rGdI~~v~~~p~~g~e~~k~RP~lVvs~~ 34 (117)
T 1ne8_A 6 RGDVYFADLSPVVGSEQGGVRPVLVIQND 34 (117)
T ss_dssp TTEEEEEECCSCCTTSCCSEEEEEECSCH
T ss_pred eceEEEEECCCCCCCccCCceEEEEEeeC
Confidence 489999999 8888887777788887653
No 76
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=30.91 E-value=78 Score=24.63 Aligned_cols=41 Identities=15% Similarity=0.091 Sum_probs=27.7
Q ss_pred EEEEecChh--hhhhcCC-eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDH--AQDHLGD-VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~--a~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
-+.-|+.-. ..+.+|. +..--+.+.|+.+++|++++++++.
T Consensus 65 gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~v~~i~G~ 108 (300)
T 3l0g_A 65 LVVCGIPILEEVFNMNKEHVKYEIHKKDGDITGKNSTLVSGEAL 108 (300)
T ss_dssp EECCCHHHHHHHHHHTTTTEEEEECCCTTCEECSSCEEEEEEEE
T ss_pred eEEEcHHHHHHHHHHcCCCeEEEEEeCCCCEeeCCCEEEEEEEC
Confidence 344455432 3455553 4433357999999999999999986
No 77
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=30.80 E-value=72 Score=25.01 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=28.5
Q ss_pred EEEEecChh--hhhhcC-CeeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 19 SATIGITDH--AQDHLG-DVVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 19 ~~~vGit~~--a~~~lG-~i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
-+.-|+.-. ..+.++ .+..--..+.|+.+.+|+++++|++.-
T Consensus 89 gVlaG~~~a~~vf~~ld~~~~v~~~~~dG~~v~~g~~l~~v~G~a 133 (320)
T 3paj_A 89 GVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTPNQTLCTLTGPA 133 (320)
T ss_dssp EECCCHHHHHHHHHHTTSCCEEEESSCTTCEECTTCEEEEEEEEH
T ss_pred ceEecHHHHHHHHHHcCCCeEEEEEeCCCCEecCCCEEEEEEecH
Confidence 445565432 244555 344334679999999999999999963
No 78
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=30.06 E-value=29 Score=28.42 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.1
Q ss_pred EEc-CCCCcEecCCCeEEEEEE
Q 044104 38 VEL-PEVGVTVKQDASFGAVES 58 (128)
Q Consensus 38 v~l-p~~G~~v~~g~~l~~iEs 58 (128)
|.+ .++|++|++||+|++|-+
T Consensus 381 i~l~~~~G~~V~~g~~l~~i~~ 402 (436)
T 3h5q_A 381 IVLNKKIGDKVEEGESLLTIHS 402 (436)
T ss_dssp EEESCCTTCEECTTSEEEEEEE
T ss_pred eEEecCCcCEeCCCCeEEEEeC
Confidence 444 689999999999999984
No 79
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=27.94 E-value=64 Score=24.67 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=27.7
Q ss_pred EEEecChhh--hhhcCCeeEEE-cCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDHA--QDHLGDVVYVE-LPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~a--~~~lG~i~~v~-lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+.-.. .+.+|+=..++ +.+.|+.+++|+++++|++.
T Consensus 54 v~aG~~~~~~~f~~~~~~~~v~~~~~dG~~v~~g~~v~~i~G~ 96 (286)
T 1x1o_A 54 VLAGLWVAERVFALADPRTAFTPLVAEGARVAEGTEVARVRGP 96 (286)
T ss_dssp ECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEEEEEEEE
T ss_pred EEECHHHHHHHHHHcCCCEEEEEEcCCCCCccCCCEEEEEEEc
Confidence 334655432 34455334554 57899999999999999996
No 80
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=26.96 E-value=82 Score=24.40 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=28.1
Q ss_pred EEEEecChh--hhhhcCC-eeEEEcCCCCcEecCCCeEEEEEEc
Q 044104 19 SATIGITDH--AQDHLGD-VVYVELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 19 ~~~vGit~~--a~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~ 59 (128)
-+.-|+... ..+.+|. +..--..+.|+.+.+|+++++|++.
T Consensus 67 gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~l~~v~G~ 110 (298)
T 3gnn_A 67 AVLCGVPWFDAVVRAVDPSIEVDWRHREGDRMSADSTVCELRGP 110 (298)
T ss_dssp EECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEEEEEEEE
T ss_pred EEEEcHHHHHHHHHHcCCCeEEEEEcCCCCEecCCCEEEEEEec
Confidence 344455433 2445564 4333457899999999999999996
No 81
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=26.22 E-value=74 Score=23.95 Aligned_cols=38 Identities=8% Similarity=-0.050 Sum_probs=25.9
Q ss_pred EEEecChhh--hhhcCCeeEEE-cCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDHA--QDHLGDVVYVE-LPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~a--~~~lG~i~~v~-lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+.... .+.+| ..++ ..+.|+.+.+|+++++|++.
T Consensus 42 v~aG~~~~~~~~~~~~--~~v~~~~~eG~~v~~g~~~~~v~G~ 82 (273)
T 2b7n_A 42 VFSGEKYALELLEMTG--IECVQTIKDKERFKPKDALMEIRGD 82 (273)
T ss_dssp ECCCHHHHHHHHHHTT--CEEEEECCTTCEECTTCEEEEEEEE
T ss_pred EEEcHHHHHHHHHHCC--cEEEEEcCCCCCcCCCCEEEEEEec
Confidence 333654332 34455 3343 46899999999999999996
No 82
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=23.93 E-value=85 Score=24.19 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=27.9
Q ss_pred EEEEecChh--hhhhcCC-eeEEEcCCCCcEecCCCeEEEEEEcc
Q 044104 19 SATIGITDH--AQDHLGD-VVYVELPEVGVTVKQDASFGAVESVK 60 (128)
Q Consensus 19 ~~~vGit~~--a~~~lG~-i~~v~lp~~G~~v~~g~~l~~iEs~k 60 (128)
-+.-|+... ..+.+|. +..--+.+.|+.+++|++++++++.-
T Consensus 56 gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~~v~~g~~v~~i~G~a 100 (287)
T 3tqv_A 56 MILCGQDFANEVINQLDKNIQITWLYSDAQKVPANARIFELKGNV 100 (287)
T ss_dssp EECCCHHHHHHHHHHHCTTCEEEESSCTTCEECTTCEEEEEEEEH
T ss_pred eEEEcHHHHHHHHHHcCCCeEEEEEeCCCCEeeCCCEEEEEEEcH
Confidence 344455433 2445564 33333679999999999999999963
No 83
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=23.87 E-value=46 Score=23.70 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=16.0
Q ss_pred CCCCcEecCCCeEEEEEE
Q 044104 41 PEVGVTVKQDASFGAVES 58 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs 58 (128)
.++|++|++||.|+.+=+
T Consensus 87 V~~G~~V~~Gq~IG~vG~ 104 (182)
T 3it5_A 87 VSNGQQVSADTKLGVYAG 104 (182)
T ss_dssp CCTTCEECTTCEEEEECS
T ss_pred cCCCCEEcCCCEEEeecC
Confidence 579999999999999864
No 84
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=23.80 E-value=1.4e+02 Score=19.97 Aligned_cols=11 Identities=36% Similarity=0.764 Sum_probs=7.2
Q ss_pred eeecCc--ceEEE
Q 044104 64 DVNSPV--SGKVV 74 (128)
Q Consensus 64 ~i~sPv--sG~V~ 74 (128)
-+|||+ +|+|+
T Consensus 123 G~yaPlT~~Gtiv 135 (145)
T 1at0_A 123 GVVAPLTREGTIV 135 (145)
T ss_dssp EEEEEEESSSEEE
T ss_pred eeEccccCcEEEE
Confidence 388887 37554
No 85
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=23.22 E-value=52 Score=24.97 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=32.9
Q ss_pred CeEEEEEEc-cccceeecCcceEEEEEehhhhcCCCcccCCCCCCCcEEEEEECCh
Q 044104 51 ASFGAVESV-KATSDVNSPVSGKVVEVNEELSSSPALVNSSPYEDGWIIKVEMDNA 105 (128)
Q Consensus 51 ~~l~~iEs~-k~~~~i~sPvsG~V~~vN~~l~~~P~lln~dpy~~gWl~~i~~~~~ 105 (128)
..-++|++. .....+.+|++|+|.+++-... +.+.. |+ =|++|.+.+.
T Consensus 45 ~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G---~~V~k---Gq-~L~~ld~~~l 93 (359)
T 3lnn_A 45 NLPAMIEADPAKLVKVLPPLAGRIVSLNKQLG---DEVKA---GD-VLFTIDSADL 93 (359)
T ss_dssp EEEEEEECCSSSEEEECCSSCEEEEECCSCTT---CEECT---TC-EEEEEECSSH
T ss_pred EEEEEEEECCCcEEEEeccCCEEEEEEEcCCC---CEEcC---CC-EEEEEChHHH
Confidence 346777763 5678999999999999985432 23321 33 5888887764
No 86
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=23.09 E-value=1.2e+02 Score=25.70 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=28.0
Q ss_pred CCCCcEecCCCeEEEEEEccccceeecC--cceEEEEE
Q 044104 41 PEVGVTVKQDASFGAVESVKATSDVNSP--VSGKVVEV 76 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k~~~~i~sP--vsG~V~~v 76 (128)
.++|+.|..|+.++++.-...++.+..| ++|+|+.+
T Consensus 123 ~~~g~~v~~G~i~g~v~e~~~ih~i~~pp~~~g~v~~i 160 (578)
T 3gqb_A 123 VKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEV 160 (578)
T ss_dssp CCTTCEECTTCEEEEEEETTEEEEEECCTTCCEEEEEE
T ss_pred cccCccccccceeeeecccccceecccCCCcCceeEEe
Confidence 4789999999999999765555665434 68998887
No 87
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=22.13 E-value=89 Score=23.85 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.5
Q ss_pred eEEE-cCCCCcEecCCCeEEEEEEc
Q 044104 36 VYVE-LPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 36 ~~v~-lp~~G~~v~~g~~l~~iEs~ 59 (128)
..++ +.+.|+.+++|++++++++.
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~G~ 95 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLEAQ 95 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEEEe
Confidence 4454 57899999999999999996
No 88
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=21.67 E-value=1.1e+02 Score=23.38 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=26.8
Q ss_pred EEEecChh--hhhhc-CCeeEE-EcCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDH--AQDHL-GDVVYV-ELPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~--a~~~l-G~i~~v-~lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+.-. ..+.+ ++=..+ ...+.|+.+.+|+++++|++.
T Consensus 66 v~aG~~~~~~~f~~~~~~~~~v~~~~~dG~~v~~g~~~~~v~G~ 109 (296)
T 1qap_A 66 VFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAIHANQTVFELQGP 109 (296)
T ss_dssp ECCCHHHHHHHHHHHHTTSSEEEESCCTTCEECTTCEEEEEEEE
T ss_pred EEECHHHHHHHHHhcCCCCeEEEEEcCCCCEecCCCEEEEEEEc
Confidence 33465532 23444 422345 457899999999999999996
No 89
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=21.52 E-value=88 Score=23.94 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=26.2
Q ss_pred EEEecChhh--hhhcCCeeEEE-cCCCCcEecCCCeEEEEEEc
Q 044104 20 ATIGITDHA--QDHLGDVVYVE-LPEVGVTVKQDASFGAVESV 59 (128)
Q Consensus 20 ~~vGit~~a--~~~lG~i~~v~-lp~~G~~v~~g~~l~~iEs~ 59 (128)
+.-|+.... .+.+| ..|+ ..+.|+.+.+|+++++|++.
T Consensus 55 v~aG~~~~~~~~~~~~--~~v~~~~~dG~~v~~g~~l~~v~G~ 95 (299)
T 2jbm_A 55 VLAGQPFFDAIFTQLN--CQVSWFLPEGSKLVPVARVAEVRGP 95 (299)
T ss_dssp ECCCHHHHHHHHHHTT--CEEEESSCTTCEECSSEEEEEEEEE
T ss_pred EEEcHHHHHHHHHHcC--CEEEEEcCCCCCCCCCCEEEEEEEc
Confidence 333654432 34445 3453 57899999999999999996
No 90
>3fo8_D Tail sheath protein GP18; mostly beta, viral structural protein, bacteriophage T4, viral protein; 1.80A {Enterobacteria phage T4}
Probab=21.34 E-value=37 Score=26.22 Aligned_cols=69 Identities=16% Similarity=0.384 Sum_probs=35.7
Q ss_pred hhcCCeeEEEcCCCCcEecCCCeE------EEEEEccccceeecCcceEEEEEe---hhhhcCCCcccCCCC-CCCcEEE
Q 044104 30 DHLGDVVYVELPEVGVTVKQDASF------GAVESVKATSDVNSPVSGKVVEVN---EELSSSPALVNSSPY-EDGWIIK 99 (128)
Q Consensus 30 ~~lG~i~~v~lp~~G~~v~~g~~l------~~iEs~k~~~~i~sPvsG~V~~vN---~~l~~~P~lln~dpy-~~gWl~~ 99 (128)
-+.|.|.+ .+-..|.....||.+ .+||....+..+-+ +|+|+++. .++......++.=|. +.+|-++
T Consensus 12 pl~~ni~~-TIt~~GsnY~VGD~i~Vky~~~vve~~GkVT~VD~--dGkI~~vfiPSakIIa~AK~i~~YP~L~~~Wt~e 88 (283)
T 3fo8_D 12 PIAGNIEY-TISTPGSNYAVGDKITVKYVSDDIETEGKITEVDA--DGKIKKINIPTAKIIAKAKEVGEYPTLGSNWTAE 88 (283)
T ss_dssp SSTTCEEE-EEEECCBSCCTTCEEEEEETTEEEEEEEEEEEECT--TCCEEEEECCCHHHHHHHHHHTCTTTCCTTEEEE
T ss_pred cccCcEEE-EEecCCCCceeCCEEEEEEcCcEEecCceEEEEcC--CCCEEEEECChHHHHHHHHhcCCCCCCCCcceEE
Confidence 34455543 233444444444443 34555444555544 67776664 233333344554444 7799887
Q ss_pred EE
Q 044104 100 VE 101 (128)
Q Consensus 100 i~ 101 (128)
+.
T Consensus 89 ~~ 90 (283)
T 3fo8_D 89 IS 90 (283)
T ss_dssp EC
T ss_pred Ee
Confidence 64
No 91
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=20.75 E-value=1.8e+02 Score=24.77 Aligned_cols=36 Identities=25% Similarity=0.411 Sum_probs=27.5
Q ss_pred CCCCcEecCCCeEEEEEEcccc-ceeecC--cceEEEEE
Q 044104 41 PEVGVTVKQDASFGAVESVKAT-SDVNSP--VSGKVVEV 76 (128)
Q Consensus 41 p~~G~~v~~g~~l~~iEs~k~~-~~i~sP--vsG~V~~v 76 (128)
.++|+.|..|+.++++.-...+ +.+..| +.|+|..+
T Consensus 131 ~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i 169 (600)
T 3vr4_A 131 IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI 169 (600)
T ss_dssp SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE
T ss_pred cccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe
Confidence 4789999999999999765433 555444 57888887
Done!