BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044109
         (236 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
           Cys2his2 Zinc Finger Induces Structural Rearrangements
           Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
           Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 39.3 bits (90), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 21/25 (84%)

Query: 87  RVFSCNYCQRKFYSSQALGGHQNAH 111
           R ++C++C+R+F S+QALGGH N H
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVH 29


>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           415- 447) Of Human Zinc Finger Protein 28 Homolog
          Length = 46

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 86  QRVFSCNYCQRKFYSSQALGGHQNAHKRER 115
           +++F CN C++ F  S +L  HQ  H  E+
Sbjct: 10  KKLFKCNECKKTFTQSSSLTVHQRIHTGEK 39


>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           628- 660) Of Human Zinc Finger Protein 95 Homolog
          Length = 46

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 86  QRVFSCNYCQRKFYSSQALGGHQNAHKRERT 116
           +R F CN C + F     L GH   H RE++
Sbjct: 10  ERPFKCNECGKGFGRRSHLAGHLRLHSREKS 40


>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           557- 589) Of Human Zinc Finger Protein 473
          Length = 46

 Score = 27.7 bits (60), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 85  EQRVFSCNYCQRKFYSSQALGGHQNAHKR 113
           +++ F CN C++ F  S+ L  H+  H R
Sbjct: 9   KEKCFKCNKCEKTFSCSKYLTQHERIHTR 37


>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
           From Human Insulinoma-Associated Protein 1 (Fragment
           424-497), Northeast Structural Genomics Consortium
           Target Hr7614b
          Length = 85

 Score = 27.7 bits (60), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 87  RVFSCNYCQRKFYSSQALGGHQN 109
           +VF C YC   FYSS  L  H N
Sbjct: 55  QVFPCKYCPATFYSSPGLTRHIN 77


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.309    0.125    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,693,140
Number of Sequences: 62578
Number of extensions: 256983
Number of successful extensions: 533
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 39
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)