BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044112
(610 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 18/224 (8%)
Query: 36 NWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95
N +W E V + K++N + GE + VGPSG GK+TLL ++AG+ + SG +
Sbjct: 8 NVTKAWGE----VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLF 61
Query: 96 VNEQPMNIT-QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRA--KARVSELL 152
+ E+ MN T R G V Q L+P L+V E + + +L G + RV+++
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVA 118
Query: 153 KELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVA 212
+ L L H+ + ++RV+IG LV +P+V L+DEP S LD+A + +
Sbjct: 119 EVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173
Query: 213 SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256
+ + + G+T++ H + L D+I++L G V G
Sbjct: 174 IEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 113/224 (50%), Gaps = 18/224 (8%)
Query: 36 NWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95
N +W E V + K++N + GE + VGPSG GK+TLL ++AG+ + SG +
Sbjct: 8 NVTKAWGE----VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLF 61
Query: 96 VNEQPMNIT-QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRA--KARVSELL 152
+ E+ MN T R G V Q L+P L+V E + + +L G + RV+++
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVA 118
Query: 153 KELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVA 212
+ L L H+ + ++RV+IG LV +P+V L+DEP S LD+A + +
Sbjct: 119 EVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 173
Query: 213 SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256
+ + + G+T++ H + L D+I++L G V G
Sbjct: 174 IEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 110/212 (51%), Gaps = 14/212 (6%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQF---R 107
L N+N + + GE MA++GPSG+GK+TLL +AG+ + SG + +E+ ++T+
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI--YKPTSGKIYFDEK--DVTELPPKD 74
Query: 108 RISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXX 167
R G V Q+ L+P +TV + + + LR +V E+ K L ++ + N
Sbjct: 75 RNVGLVFQNWALYPHMTVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDKLLN----- 128
Query: 168 XXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIV 227
++RV+I LV +P VLL+DEP S LD+ L V + LK + + G T V
Sbjct: 129 RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 228 LTIHQPGFRILELFDQILLLSKGTVVHHGSLD 259
H L + D+I ++ +G ++ G+ D
Sbjct: 189 YVTHDQA-EALAMADRIAVIREGEILQVGTPD 219
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 18/224 (8%)
Query: 36 NWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95
N +W E V + K++N + GE + VGPSG GK+TLL ++AG+ + SG +
Sbjct: 8 NVTKAWGE----VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLF 61
Query: 96 VNEQPMNIT-QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRA--KARVSELL 152
+ E+ MN T R G V Q L+P L+V E + + +L G + RV+++
Sbjct: 62 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL---AGAKKEVINQRVNQVA 118
Query: 153 KELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVA 212
+ L L H+ + ++RV+IG LV +P+V L+D+P S LD+A + +
Sbjct: 119 EVLQLAHLLD-----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMR 173
Query: 213 SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256
+ + + G+T++ H + L D+I++L G V G
Sbjct: 174 IEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTL---LDILAGMIPLRRVSGSVLVNEQPMNITQF 106
+LK +N R GE++ ++GPSG+GK+T L++L + + + + N+ +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 107 RRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXX 166
R G V Q LFP +TV + + +A+A+ ELL ++GL+ A+
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 137
Query: 167 XXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTI 226
+RV+I L +P ++L DEPTS LD V S++K +A +G T+
Sbjct: 138 SLSGGQA-----QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA-NEGMTM 191
Query: 227 VLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
V+ H+ GF E+ D++L + G ++ G
Sbjct: 192 VVVTHEMGF-AREVGDRVLFMDGGYIIEEGK 221
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 10/211 (4%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTL---LDILAGMIPLRRVSGSVLVNEQPMNITQF 106
+LK +N R GE++ ++GPSG+GK+T L++L + + + + N+ +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 107 RRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXX 166
R G V Q LFP +TV + + +A+A+ ELL ++GL+ A+
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158
Query: 167 XXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTI 226
+RV+I L +P ++L DEPTS LD V S++K +A +G T+
Sbjct: 159 SLSGGQA-----QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA-NEGMTM 212
Query: 227 VLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
V+ H+ GF E+ D++L + G ++ G
Sbjct: 213 VVVTHEMGF-AREVGDRVLFMDGGYIIEEGK 242
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 26/249 (10%)
Query: 44 KPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM-IP----------LRRVSG 92
K V L NVN GE I+GPSGAGKTT + I+AG+ +P L +G
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 93 SVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELL 152
++V + I G V Q L+P LT E + + + + + RV E+
Sbjct: 74 KLIVPPEDRKI-------GMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIRKRVEEVA 125
Query: 153 KELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVA 212
K L + HV N ++RV++ LV DP++LL+DEP S LD+ +
Sbjct: 126 KILDIHHVLN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 213 SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS-LDLLEHRLRIAGHS 271
+L+K + + G T+++ H P I + D++ +L KG +V G DL ++ + I S
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
Query: 272 IPRQVNVLE 280
+ ++N LE
Sbjct: 240 LIGEINELE 248
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 85.5 bits (210), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 26/249 (10%)
Query: 44 KPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM-IP----------LRRVSG 92
K V L NVN GE I+GPSGAGKTT + I+AG+ +P L +G
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG 73
Query: 93 SVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELL 152
++V + I G V Q L+P LT E + + + + + RV E+
Sbjct: 74 KLIVPPEDRKI-------GMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIRKRVEEVA 125
Query: 153 KELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVA 212
K L + HV N ++RV++ LV DP++LL+DEP S LD+ +
Sbjct: 126 KILDIHHVLN-----HFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 213 SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS-LDLLEHRLRIAGHS 271
+L+K + + G T+++ H P I + D++ +L KG +V G DL ++ + I S
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVAS 239
Query: 272 IPRQVNVLE 280
+ ++N LE
Sbjct: 240 LIGEINELE 248
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 24/234 (10%)
Query: 32 VDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVS 91
V+E N+ S LK +N + GE+ AI+G +G GK+TL G+ L+ S
Sbjct: 10 VEELNYNYS-----DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--LKPSS 62
Query: 92 GSVLVNEQPMN-----ITQFRRISGYVTQD--EVLFPLLTVKETLMYSARLRLHVGLNRA 144
G +L + +P++ I + R G V QD LF ++ + ++L +
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE--DEI 120
Query: 145 KARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLD 204
+ RV LK G+EH+ + K+RV+I LV +P VL++DEPT+GLD
Sbjct: 121 RKRVDNALKRTGIEHLKD-----KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 205 SASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF-DQILLLSKGTVVHHGS 257
+ LL M + G TI++ H I+ L+ D + ++ +G V+ G+
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHD--IDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 112/218 (51%), Gaps = 17/218 (7%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+LK+VN E G+I +VG +G+GKTTLL ILAG++ +G + ++ P + R+
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLA---AAGEIFLDGSPADPFLLRKN 82
Query: 110 SGYVTQDEVLFPL-LTVKETLMYSARLRLHVGLNRA--KARVSELLKELGLEHVANVXXX 166
GYV Q+ + TV+E + +S + +GL+ + + R+ ++L+ +GL +A
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEI---MGLDESEMRKRIKKVLELVGLSGLA----- 134
Query: 167 XXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTI 226
K+R++I L D L +DEP S LD S + +L+ + +GK I
Sbjct: 135 AADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLK-NEGKGI 193
Query: 227 VLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHR 264
+L H+ L+ D IL +S GT+ GS + R
Sbjct: 194 ILVTHE--LEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 108/239 (45%), Gaps = 19/239 (7%)
Query: 36 NWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95
N ++K + LKNVN + GE ++I GPSG+GK+T L+I+ + + G V
Sbjct: 6 NVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLD--KPTEGEVY 63
Query: 96 VNEQPMN------ITQFRRIS-GYVTQDEVLFPLLTVKETLMYSA--RLRLHVGLNRAKA 146
++ N +T+ RR G+V Q L PLLT E + + R +
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRK 123
Query: 147 RVSELLKELGLEH-VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDS 205
R E LK LE AN ++RV+I L ++P ++L DEPT LDS
Sbjct: 124 RALECLKXAELEERFAN-----HKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDS 178
Query: 206 ASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHR 264
+ + LLK + + GKT+V+ H + ++I+ L G V L + R
Sbjct: 179 KTGEKIXQLLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEKLRGFDDR 235
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 23/241 (9%)
Query: 36 NWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95
N ++K + LKNVN + GE ++I+GPSG+GK+T+L+I+ + + G V
Sbjct: 6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD--KPTEGEVY 63
Query: 96 VNEQPMN------ITQFRRIS-GYVTQDEVLFPLLTVKET----LMYSARLRLHVGLNRA 144
++ N +T+ RR G+V Q L PLLT E L++ R + G R
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS-GEERR 122
Query: 145 KARVSELLKELGLEH-VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGL 203
K R E LK LE AN ++RV+I L ++P ++L D+PT L
Sbjct: 123 K-RALECLKMAELEERFAN-----HKPNQLSGGQQQRVAIARALANNPPIILADQPTGAL 176
Query: 204 DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
DS + + LLK + + GKT+V+ H + ++I+ L G V L +
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEKLRGFDD 234
Query: 264 R 264
R
Sbjct: 235 R 235
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 114/217 (52%), Gaps = 18/217 (8%)
Query: 48 VCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG-----SVLVNEQPMN 102
V + V+ E + GE +A++GPSG GKTT L +LAG+ + SG VLVN+ P
Sbjct: 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI--YKPTSGEIYFDDVLVNDIP-- 71
Query: 103 ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN 162
++R + G V Q+ L+P +TV E + + R R + + + RV E+ ++L ++++ +
Sbjct: 72 -PKYREV-GMVFQNYALYPHMTVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDNLLD 128
Query: 163 VXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQ 222
++RV++ LV P VLL DEP S LD+ + + + +K++ +
Sbjct: 129 -----RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL 183
Query: 223 GKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLD 259
G T V H + + +I + ++G +V +G+ D
Sbjct: 184 GITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPD 219
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 109/214 (50%), Gaps = 10/214 (4%)
Query: 45 PPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV-NEQPMNI 103
P ++ V+ + R GE++ ++GPSG+GKTT+L ++AG+ R G V + ++ ++
Sbjct: 25 PGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL--ERPTKGDVWIGGKRVTDL 82
Query: 104 TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANV 163
+R G V Q+ LF +TV + + + R + V + ARV ELL+ + LE AN
Sbjct: 83 PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLESYAN- 140
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQG 223
++RV++ L P VLL DEP + +D+ + + ++ + + G
Sbjct: 141 ----RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG 196
Query: 224 KTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
T V H LE+ D++L+L +G V G+
Sbjct: 197 VTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGT 229
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 114/241 (47%), Gaps = 23/241 (9%)
Query: 36 NWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95
N ++K + LKNVN + GE ++I+GPSG+GK+T+L+I+ + + G V
Sbjct: 6 NVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD--KPTEGEVY 63
Query: 96 VNEQPMN------ITQFRRIS-GYVTQDEVLFPLLTVKET----LMYSARLRLHVGLNRA 144
++ N +T+ RR G+V Q L PLLT E L++ R + G R
Sbjct: 64 IDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS-GEERR 122
Query: 145 KARVSELLKELGLEH-VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGL 203
K R E LK LE AN ++RV+I L ++P ++L D+PT L
Sbjct: 123 K-RALECLKMAELEERFAN-----HKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 204 DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
DS + + LLK + + GKT+V+ H + ++I+ L G V L +
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDGEVEREEKLRGFDD 234
Query: 264 R 264
R
Sbjct: 235 R 235
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 105/217 (48%), Gaps = 12/217 (5%)
Query: 48 VCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVS---GSVLVN--EQPMN 102
V ++ ++ E + GE M ++GPSG GKTT L ++AG+ R G LV E+ +
Sbjct: 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIF 75
Query: 103 ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN 162
+ R V Q L+P +TV + + + +LR V RV E+ + LGL + N
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELLN 134
Query: 163 VXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQ 222
++RV++G +V P V L+DEP S LD+ + + + LK + +
Sbjct: 135 -----RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL 189
Query: 223 GKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLD 259
G T + H + + D+I ++++G + GS D
Sbjct: 190 GVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 121/247 (48%), Gaps = 31/247 (12%)
Query: 27 RSFRGVDEFN--WFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM 84
R RG EF WF K+KP +LK++ +PG+ +A+VGP+G+GKTT++++L
Sbjct: 349 REVRGEIEFKNVWFSYDKKKP----VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF 404
Query: 85 IPLRRVSGSVLVNEQPMNITQFRRIS-----GYVTQDEVLFPLLTVKETLMYSARLRLHV 139
+ R G +LV+ ++I + +R S G V QD +LF TVKE L Y
Sbjct: 405 YDVDR--GQILVD--GIDIRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNPGATDE 459
Query: 140 GLNRAK--ARVSELLKEL--GLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLL 195
+ A +K L G E V ++ ++I + +P +L+
Sbjct: 460 EIKEAAKLTHSDHFIKHLPEGYETVLT-----DNGEDLSQGQRQLLAITRAFLANPKILI 514
Query: 196 IDEPTSGLDSASALNV-ASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254
+DE TS +D+ + ++ A++ K M +GKT ++ H+ ++ D I++L G +V
Sbjct: 515 LDEATSNVDTKTEKSIQAAMWKLM---EGKTSIIIAHR--LNTIKNADLIIVLRDGEIVE 569
Query: 255 HGSLDLL 261
G D L
Sbjct: 570 MGKHDEL 576
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 17/209 (8%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM-IPLRRVSGSVLVNEQPM-NITQFRR 108
L N++ + GE I+GP+GAGKT L+++AG +P SG +L++ + + +++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGKDVTDLSPEKH 72
Query: 109 ISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXX 168
+V Q+ LFP + VK+ L + R++ + RV + ++L +EH+ +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----KDPKRVLDTARDLKIEHLLD-----R 123
Query: 169 XXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVL 228
++RV++ LV +P +LL+DEP S LD + N +L + K T++
Sbjct: 124 NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183
Query: 229 TIH-QPGFRILELFDQILLLSKGTVVHHG 256
H Q RI+ D+I ++ G ++ G
Sbjct: 184 ITHDQTEARIMA--DRIAVVMDGKLIQVG 210
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 113/219 (51%), Gaps = 17/219 (7%)
Query: 46 PAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP---MN 102
P++ +L+ ++ E + G+ +A+VG SG GK+T++ +L ++GSV ++ + +N
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLN 1101
Query: 103 ITQFRRISGYVTQDEVLFPLLTVKETLMY--SARLRLHVGLNRA--KARVSELLKELGLE 158
+ R G V+Q+ +LF ++ E + Y ++R+ + + RA +A + + + L +
Sbjct: 1102 VQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 159 HVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYM 218
+ V K+R++I LV P +LL+DE TS LD+ S V L
Sbjct: 1161 YNTRV---GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD-- 1215
Query: 219 AVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
++G+T ++ H+ ++ D I+++ G V HG+
Sbjct: 1216 KAREGRTCIVIAHR--LSTIQNADLIVVIQNGKVKEHGT 1252
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 105/221 (47%), Gaps = 19/221 (8%)
Query: 48 VCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI-PLRRVSGSVLVNEQP---MNI 103
V ILK +N + + G+ +A+VG SG GK+T + ++ + PL G V ++ Q +N+
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINV 459
Query: 104 TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE---LGLEHV 160
R I G V+Q+ VLF T+ E + Y R V ++ + V E + L H
Sbjct: 460 RYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQ 515
Query: 161 ANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAV 220
+ K+R++I LV +P +LL+DE TS LD+ S V + L
Sbjct: 516 FDT-LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD--KA 572
Query: 221 KQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261
++G+T ++ H+ + D I G +V G+ D L
Sbjct: 573 REGRTTIVIAHR--LSTVRNADVIAGFDGGVIVEQGNHDEL 611
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 113/219 (51%), Gaps = 17/219 (7%)
Query: 46 PAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP---MN 102
P++ +L+ ++ E + G+ +A+VG SG GK+T++ +L ++GSV ++ + +N
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEIKQLN 1101
Query: 103 ITQFRRISGYVTQDEVLFPLLTVKETLMY--SARLRLHVGLNRA--KARVSELLKELGLE 158
+ R G V+Q+ +LF ++ E + Y ++R+ + + RA +A + + + L +
Sbjct: 1102 VQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDK 1160
Query: 159 HVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYM 218
+ V K+R++I LV P +LL+DE TS LD+ S V L
Sbjct: 1161 YNTRV---GDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD-- 1215
Query: 219 AVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
++G+T ++ H+ ++ D I+++ G V HG+
Sbjct: 1216 KAREGRTCIVIAHR--LSTIQNADLIVVIQNGKVKEHGT 1252
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 48 VCILKNVNCEARPGEIMAIVGPSGAGKTT-------LLDILAGMIPLRRVSGSVLVNEQP 100
V ILK +N + + G+ +A+VG SG GK+T L D L GM+ + G + +
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVS---IDGQDI---RT 456
Query: 101 MNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE---LGL 157
+N+ R I G V+Q+ VLF T+ E + Y R V ++ + V E + L
Sbjct: 457 INVRYLREIIGVVSQEPVLFA-TTIAENIRYG---REDVTMDEIEKAVKEANAYDFIMKL 512
Query: 158 EHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKY 217
H + K+R++I LV +P +LL+DE TS LD+ S V + L
Sbjct: 513 PHQFDT-LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD- 570
Query: 218 MAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261
++G+T ++ H+ + D I G +V G+ D L
Sbjct: 571 -KAREGRTTIVIAHR--LSTVRNADVIAGFDGGVIVEQGNHDEL 611
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 119/250 (47%), Gaps = 49/250 (19%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
+T+R+ R ++ KP + IL N+N + GE++ IVG SG+GK+TL ++
Sbjct: 4 ITFRNIR----------FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 53
Query: 84 M-IPLRRVSGSVLVNEQPMNITQ---FRRISGYVTQDEVLF------------PLLTVKE 127
IP +G VL++ + + RR G V QD VL P ++V E
Sbjct: 54 FYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-E 109
Query: 128 TLMYSARLR-LHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVD 186
++Y+A+L H ++ + + ++ E G ++R++I
Sbjct: 110 KVIYAAKLAGAHDFISELREGYNTIVGEQG--------------AGLSGGQRQRIAIARA 155
Query: 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246
LV++P +L+ DE TS LD S + + + +G+T+++ H+ ++ D+I++
Sbjct: 156 LVNNPKILIFDEATSALDYESEHVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIV 211
Query: 247 LSKGTVVHHG 256
+ KG +V G
Sbjct: 212 MEKGKIVEQG 221
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 119/250 (47%), Gaps = 49/250 (19%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
+T+R+ R ++ KP + IL N+N + GE++ IVG SG+GK+TL ++
Sbjct: 2 ITFRNIR----------FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 84 M-IPLRRVSGSVLVNEQPMNITQ---FRRISGYVTQDEVLF------------PLLTVKE 127
IP +G VL++ + + RR G V QD VL P ++V E
Sbjct: 52 FYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-E 107
Query: 128 TLMYSARLR-LHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVD 186
++Y+A+L H ++ + + ++ E G ++R++I
Sbjct: 108 KVIYAAKLAGAHDFISELREGYNTIVGEQG--------------AGLSGGQRQRIAIARA 153
Query: 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246
LV++P +L+ DE TS LD S + + + +G+T+++ H+ ++ D+I++
Sbjct: 154 LVNNPKILIFDEATSALDYESEHVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIV 209
Query: 247 LSKGTVVHHG 256
+ KG +V G
Sbjct: 210 MEKGKIVEQG 219
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 119/250 (47%), Gaps = 49/250 (19%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
+T+R+ R ++ KP + IL N+N + GE++ IVG SG+GK+TL ++
Sbjct: 8 ITFRNIR----------FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57
Query: 84 M-IPLRRVSGSVLVNEQPMNITQ---FRRISGYVTQDEVLF------------PLLTVKE 127
IP +G VL++ + + RR G V QD VL P ++V E
Sbjct: 58 FYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-E 113
Query: 128 TLMYSARLR-LHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVD 186
++Y+A+L H ++ + + ++ E G ++R++I
Sbjct: 114 KVIYAAKLAGAHDFISELREGYNTIVGEQG--------------AGLSGGQRQRIAIARA 159
Query: 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246
LV++P +L+ DE TS LD S + + + +G+T+++ H+ ++ D+I++
Sbjct: 160 LVNNPKILIFDEATSALDYESEHVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIV 215
Query: 247 LSKGTVVHHG 256
+ KG +V G
Sbjct: 216 MEKGKIVEQG 225
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 106/234 (45%), Gaps = 13/234 (5%)
Query: 31 GVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRR- 89
G E WK + V +K+++ E + GE + ++GPSG GKTT L +AG+ R
Sbjct: 3 GXAEVKLINIWK-RFGDVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRG 61
Query: 90 ---VSGSVLVN-EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAK 145
+ +++ + E+ + + R V Q L+P TV + + + +LR V
Sbjct: 62 QIYIEDNLVADPEKGVFVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLR-KVPKQEID 120
Query: 146 ARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDS 205
RV E+ + LGL + N ++RV++G ++ P V L DEP S LD+
Sbjct: 121 KRVREVAEXLGLTELLN-----RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDA 175
Query: 206 ASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLD 259
+ + LK + + G T + H D+I + +KG + G+ D
Sbjct: 176 KLRVKXRAELKKLQRQLGVTTIYVTHD-QVEAXTXGDRIAVXNKGELQQVGTPD 228
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 49/250 (19%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
+T+R+ R ++ KP + IL N+N + GE++ IVG +G+GK+TL ++
Sbjct: 4 ITFRNIR----------FRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQR 53
Query: 84 M-IPLRRVSGSVLVNEQPMNITQ---FRRISGYVTQDEVLF------------PLLTVKE 127
IP +G VL++ + + RR G V QD VL P ++V E
Sbjct: 54 FYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-E 109
Query: 128 TLMYSARLR-LHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVD 186
++Y+A+L H ++ + + ++ E G ++R++I
Sbjct: 110 KVIYAAKLAGAHDFISELREGYNTIVGEQG--------------AGLSGGQRQRIAIARA 155
Query: 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246
LV++P +L+ DE TS LD S + + + +G+T+++ H+ ++ D+I++
Sbjct: 156 LVNNPKILIFDEATSALDYESEHVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIV 211
Query: 247 LSKGTVVHHG 256
+ KG +V G
Sbjct: 212 MEKGKIVEQG 221
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 103/212 (48%), Gaps = 20/212 (9%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
ILK ++ + GE ++I+G SG+GK+TLL IL G++ G V + + ++ T + +
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDA-PTEGKVFLEGKEVDYTNEKEL 76
Query: 110 S-------GYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN 162
S G+V Q L P LT E ++ L++ AK R LL ELGL
Sbjct: 77 SLLRNRKLGFVFQFHYLIPELTALENVIVPM-LKMGKPKKEAKERGEYLLSELGLGD--- 132
Query: 163 VXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQ 222
++RV+I L ++P +L DEPT LDSA+ V + ++ + +
Sbjct: 133 --KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI--FLKINE 188
Query: 223 GKT-IVLTIHQPGFRILELFDQILLLSKGTVV 253
G T IV+ H+ + EL + L + G VV
Sbjct: 189 GGTSIVMVTHER--ELAELTHRTLEMKDGKVV 218
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 119/250 (47%), Gaps = 49/250 (19%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
+T+R+ R ++ KP + IL N+N + GE++ IVG SG+GK+TL ++
Sbjct: 8 ITFRNIR----------FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57
Query: 84 M-IPLRRVSGSVLVNEQPMNITQ---FRRISGYVTQDEVLF------------PLLTVKE 127
IP +G VL++ + + RR G V QD VL P ++V E
Sbjct: 58 FYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-E 113
Query: 128 TLMYSARLR-LHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVD 186
++Y+A+L H ++ + + ++ E G ++R++I
Sbjct: 114 KVIYAAKLAGAHDFISELREGYNTIVGEQG--------------AGLSGGQRQRIAIARA 159
Query: 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246
LV++P +L+ D+ TS LD S + + + +G+T+++ H+ ++ D+I++
Sbjct: 160 LVNNPKILIFDQATSALDYESEHVI--MRNMHKICKGRTVIIIAHR--LSTVKNADRIIV 215
Query: 247 LSKGTVVHHG 256
+ KG +V G
Sbjct: 216 MEKGKIVEQG 225
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 21/217 (9%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN------IT 104
L NV+ G+I ++G SGAGK+TL+ + + R GSVLV+ Q + +T
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLERPTEGSVLVDGQELTTLSESELT 78
Query: 105 QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG---LNRAKARVSELLKELGLEHVA 161
+ RR G + Q F LL+ + T+ + L L + + K RV+ELL +GL
Sbjct: 79 KARRQIGMIFQH---FNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 134
Query: 162 NVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVK 221
+ K+RV+I L +P VLL DE TS LD A+ ++ LLK + +
Sbjct: 135 D-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRR 189
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSL 258
G TI+L H+ + + D + ++S G ++ ++
Sbjct: 190 LGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTV 225
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL-----VNEQPMNIT 104
ILK ++ E GEI ++GP+GAGKTT L I++ +I + SG V V E+P +
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI--KPSSGIVTVFGKNVVEEPHEV- 86
Query: 105 QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVX 164
R++ Y+ ++ + + E L + A G + + E + E E
Sbjct: 87 --RKLISYLPEEAGAYRNMQGIEYLRFVA------GFYASSSSEIEEMVERATEIAGLGE 138
Query: 165 XXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGK 224
R++ I L+ +P + ++DEPTSGLD +A V +LK A ++G
Sbjct: 139 KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QASQEGL 197
Query: 225 TIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLR 266
TI+++ H + L D+I L+ GT+V G+++ L+ R +
Sbjct: 198 TILVSSHNM-LEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 21/217 (9%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM------NIT 104
L NV+ G+I ++G SGAGK+TL+ + + R GSVLV+ Q + +T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--ERPTEGSVLVDGQELTTLSESELT 101
Query: 105 QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG---LNRAKARVSELLKELGLEHVA 161
+ RR G + Q F LL+ + T+ + L L + + K RV+ELL +GL
Sbjct: 102 KARRQIGXIFQH---FNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 162 NVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVK 221
+ K+RV+I L +P VLL D+ TS LD A+ ++ LLK + +
Sbjct: 158 D-----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSL 258
G TI+L H+ + + D + ++S G ++ ++
Sbjct: 213 LGLTILLITHEXDV-VKRICDCVAVISNGELIEQDTV 248
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 106/228 (46%), Gaps = 35/228 (15%)
Query: 46 PAVCILKNVNCEARPGEIMAIVGPSGAGKTTLL-------DILAGMIPLRRVSGSVLVNE 98
P + ILK ++ PG+ +A+VGPSG GK+T++ D L G I + GS +
Sbjct: 1090 PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI---FIDGSEI--- 1143
Query: 99 QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE 158
+ +N R V+Q+ LF ++ E ++Y GL+ + ++++ + L
Sbjct: 1144 KTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIY--------GLDPSSVTMAQVEEAARLA 1194
Query: 159 HVANVXXXX---------XXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASAL 209
++ N K+R++I LV +P +LL+DE TS LD+ S
Sbjct: 1195 NIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254
Query: 210 NVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
V L ++G+T ++ H+ + D I ++S GT++ G+
Sbjct: 1255 VVQEALDR--AREGRTCIVIAHR--LNTVMNADCIAVVSNGTIIEKGT 1298
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 104/237 (43%), Gaps = 38/237 (16%)
Query: 46 PAVCILKNVNCEARPGEIMAIVGPSGAGKTTLL-------DILAGMIPLRRVSGSVLVNE 98
P V IL+ +N G+ +A+VG SG GK+T++ D+L G I + V +
Sbjct: 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV------DV 482
Query: 99 QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAK-------ARVSEL 151
+ +N+ R+ V+Q+ LF T++E + G+ R + A +
Sbjct: 483 RDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITREEMVAACKMANAEKF 536
Query: 152 LKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV 211
+K L + V K+R++I LV +P +LL+DE TS LD+ S V
Sbjct: 537 IKTLPNGYNTLVGDRGTQLSGGQ---KQRIAIARALVRNPKILLLDEATSALDAESEGIV 593
Query: 212 ASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLRIA 268
L A +G+T ++ H+ + D I+ G VV G +HR +A
Sbjct: 594 QQALDKAA--KGRTTIIIAHR--LSTIRNADLIISCKNGQVVEVG-----DHRALMA 641
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 21/217 (9%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN------IT 104
L NV+ G+I ++G SGAGK+TL+ + + R GSVLV+ Q + +T
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLERPTEGSVLVDGQELTTLSESELT 101
Query: 105 QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG---LNRAKARVSELLKELGLEHVA 161
+ RR G + Q F LL+ + T+ + L L + + K RV+ELL +GL
Sbjct: 102 KARRQIGMIFQH---FNLLSSR-TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH 157
Query: 162 NVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVK 221
+ K+RV+I L +P VLL D+ TS LD A+ ++ LLK + +
Sbjct: 158 D-----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRR 212
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSL 258
G TI+L H+ + + D + ++S G ++ ++
Sbjct: 213 LGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTV 248
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 49/250 (19%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
+T+R+ R ++ KP + IL N+N + GE++ IVG SG+GK+TL ++
Sbjct: 2 ITFRNIR----------FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 51
Query: 84 M-IPLRRVSGSVLVNEQPMNITQ---FRRISGYVTQDEVLF------------PLLTVKE 127
IP +G VL++ + + RR G V QD VL P ++V E
Sbjct: 52 FYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-E 107
Query: 128 TLMYSARLR-LHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVD 186
++Y+A+L H ++ + + ++ E G ++R++I
Sbjct: 108 KVIYAAKLAGAHDFISELREGYNTIVGEQG--------------AGLSGGQRQRIAIARA 153
Query: 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246
LV++P +L+ DE TS LD S + + + +G+T+++ + ++ D+I++
Sbjct: 154 LVNNPKILIFDEATSALDYESEHVI--MRNMHKICKGRTVIIIAAR--LSTVKNADRIIV 209
Query: 247 LSKGTVVHHG 256
+ KG +V G
Sbjct: 210 MEKGKIVEQG 219
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 118/250 (47%), Gaps = 49/250 (19%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
+T+R+ R ++ KP + IL N+N + GE++ IVG SG+GK+TL ++
Sbjct: 8 ITFRNIR----------FRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQR 57
Query: 84 M-IPLRRVSGSVLVNEQPMNITQ---FRRISGYVTQDEVLF------------PLLTVKE 127
IP +G VL++ + + RR G V QD VL P ++V E
Sbjct: 58 FYIP---ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-E 113
Query: 128 TLMYSARLR-LHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVD 186
++Y+A+L H ++ + + ++ E G ++R++I
Sbjct: 114 KVIYAAKLAGAHDFISELREGYNTIVGEQG--------------AGLSGGQRQRIAIARA 159
Query: 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246
LV++P +L+ DE TS LD S + + + +G+T+++ + ++ D+I++
Sbjct: 160 LVNNPKILIFDEATSALDYESEHVI--MRNMHKICKGRTVIIIAAR--LSTVKNADRIIV 215
Query: 247 LSKGTVVHHG 256
+ KG +V G
Sbjct: 216 MEKGKIVEQG 225
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 116/246 (47%), Gaps = 31/246 (12%)
Query: 28 SFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL 87
SF V EF +F + P +L VN +PG ++A++G +G+GK+TL++++ +I
Sbjct: 343 SFENV-EFRYF---ENTDP---VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP 395
Query: 88 RRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKAR 147
R G V V+E + + + + G+++ +ET+++S ++ ++ R A
Sbjct: 396 ER--GRVEVDELDVRTVKLKDLRGHISA--------VPQETVLFSGTIKENLKWGREDAT 445
Query: 148 VSELLKELGLEHVANVXXXXXXXXXXXXX---------XKRRVSIGVDLVHDPAVLLIDE 198
E+++ + + + K+R+SI LV P VL++D+
Sbjct: 446 DDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDD 505
Query: 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS- 257
TS +D + + LK K T ++T P L D+IL+L +G V G+
Sbjct: 506 CTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP---TALLADKILVLHEGKVAGFGTH 561
Query: 258 LDLLEH 263
+LLEH
Sbjct: 562 KELLEH 567
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 108/231 (46%), Gaps = 29/231 (12%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN---ITQF 106
IL++++ EA+P I+A GPSG GK+T+ +L + +G + ++ QP++ + +
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF--YQPTAGEITIDGQPIDNISLENW 74
Query: 107 RRISGYVTQDEVLFPLLTVKETLMY-------SARLRLHVGLNRAKARVSELLKELGLEH 159
R G+V+QD + T++E L Y L + L A++ V + +L E
Sbjct: 75 RSQIGFVSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE- 132
Query: 160 VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMA 219
++R++I + +P +L++DE T+ LDS S V L +
Sbjct: 133 ------VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD--S 184
Query: 220 VKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLRIAGH 270
+ +G+T ++ H+ + D+I + KG + G +H +A H
Sbjct: 185 LMKGRTTLVIAHR--LSTIVDADKIYFIEKGQITGSG-----KHNELVATH 228
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 17/201 (8%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQF-RR 108
+ + +N + G+I+A++G +G GK+TLLD+L G+ R + G + V + + QF
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI--HRPIQGKIEVYQSIGFVPQFFSS 77
Query: 109 ISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXX 168
Y D VL T T V + + L L L H+A
Sbjct: 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAM--------QALDYLNLTHLAK-----R 124
Query: 169 XXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVL 228
++ + I + + ++L+DEPTS LD A+ V SLL +A Q T+V
Sbjct: 125 EFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVF 184
Query: 229 TIHQPGFRILELFDQILLLSK 249
T HQP +++ + ++ LLL+K
Sbjct: 185 TTHQPN-QVVAIANKTLLLNK 204
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 111/229 (48%), Gaps = 25/229 (10%)
Query: 42 KEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM 101
KEKP L +V+ G+ +A+VG SG+GK+T+ ++ + SGS+ ++ +
Sbjct: 354 KEKPA----LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD--SGSICLDGHDV 407
Query: 102 ---NITQFRRISGYVTQDEVLFPLLTVKETLMYSAR---LRLHVGLNRAKARVSELLKEL 155
+T RR V+Q+ LF T+ + Y+A R + +A E ++ +
Sbjct: 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM 466
Query: 156 --GLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS 213
GL+ V ++RV+I L+ D VL++DE TS LD+ S + +
Sbjct: 467 PQGLDTVIG-----ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521
Query: 214 LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG-SLDLL 261
L + ++ KT+++ H+ +E D+IL++ +G ++ G DLL
Sbjct: 522 ALDEL--QKNKTVLVIAHR--LSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 17/220 (7%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN-ITQ--FR 107
L++V+ PG+ +A+VGPSGAGK+T+L +L + SG + ++ Q ++ +TQ R
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS--SGCIRIDGQDISQVTQASLR 127
Query: 108 RISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLN--RAKARVSELLKELGLEHVANVXX 165
G V QD VLF T+ + + Y R+ G + A A+ + + +
Sbjct: 128 SHIGVVPQDTVLFN-DTIADNIRYG---RVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQ 183
Query: 166 XXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV-ASLLKYMAVKQGK 224
K+RV+I ++ P ++L+DE TS LD+++ + ASL K A +
Sbjct: 184 VGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA---NR 240
Query: 225 TIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHR 264
T ++ H+ + DQIL++ G +V G + L R
Sbjct: 241 TTIVVAHR--LSTVVNADQILVIKDGCIVERGRHEALLSR 278
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 53/235 (22%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRIS 110
L+NV+ GE + + G +G+GK+TLL I+AG+I SG VL + + + RR
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI--EPTSGDVLYDGERKKGYEIRRNI 80
Query: 111 GYVTQ------------DEVLF----------PLLTVKETLMYSARLRLHVGLNRAKARV 148
G Q DEV F P+ VK+ + + + + + K RV
Sbjct: 81 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEF-----VGLDFDSFKDRV 135
Query: 149 SELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208
L G E KRRV+I +VH+P +L++DEP GLD
Sbjct: 136 PFFLS--GGE-------------------KRRVAIASVIVHEPDILILDEPLVGLDREGK 174
Query: 209 LNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS-LDLLE 262
++ +++ GKT++L H ++ D++++L KG V G+ ++ LE
Sbjct: 175 TDLLRIVEKWKT-LGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 227
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 111/244 (45%), Gaps = 24/244 (9%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
L +SF+G EF P V I ++ + G + A+VGPSG+GK+T+L +L
Sbjct: 333 LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 392
Query: 84 MIPLRRVSGSVLVNE---QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG 140
+ SG++ ++ + +N R G V+Q+ +LF ++ E + Y A V
Sbjct: 393 LYD--PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDPSSVT 449
Query: 141 LNRAKARVSELLKEL--------GLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPA 192
+ RV+E+ + G V K+R++I L+ +P
Sbjct: 450 AEEIQ-RVAEVANAVAFIRNFPQGFNTVVG-----EKGVLLSGGQKQRIAIARALLKNPK 503
Query: 193 VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252
+LL+DE TS LD+ + V L + G+T+++ H+ ++ + + +L +G +
Sbjct: 504 ILLLDEATSALDAENEYLVQEALDRL--MDGRTVLVIAHR--LSTIKNANMVAVLDQGKI 559
Query: 253 VHHG 256
+G
Sbjct: 560 TEYG 563
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 106/235 (45%), Gaps = 53/235 (22%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRIS 110
L+NV+ GE + + G +G+GK+TLL I+AG+I SG VL + + + RR
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI--EPTSGDVLYDGERKKGYEIRRNI 82
Query: 111 GYVTQ------------DEVLF----------PLLTVKETLMYSARLRLHVGLNRAKARV 148
G Q DEV F P+ VK+ + + + + + K RV
Sbjct: 83 GIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEF-----VGLDFDSFKDRV 137
Query: 149 SELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208
L G E KRRV+I +VH+P +L++DEP GLD
Sbjct: 138 PFFLS--GGE-------------------KRRVAIASVIVHEPDILILDEPLVGLDREGK 176
Query: 209 LNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS-LDLLE 262
++ +++ GKT++L H ++ D++++L KG V G+ ++ LE
Sbjct: 177 TDLLRIVEKWKT-LGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRMEFLE 229
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 110/244 (45%), Gaps = 24/244 (9%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
L +SF+G EF P V I ++ + G + A+VGPSG+GK+T+L +L
Sbjct: 364 LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLR 423
Query: 84 MIPLRRVSGSVLVNE---QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG 140
+ SG++ ++ + +N R G V+Q+ +LF ++ E + Y A V
Sbjct: 424 L--YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDPSSVT 480
Query: 141 LNRAKARVSELLKEL--------GLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPA 192
+ RV+E+ + G V K+R++I L+ +P
Sbjct: 481 AEEIQ-RVAEVANAVAFIRNFPQGFNTVVG-----EKGVLLSGGQKQRIAIARALLKNPK 534
Query: 193 VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252
+LL+DE TS LD+ + V L + G+T+++ H ++ + + +L +G +
Sbjct: 535 ILLLDEATSALDAENEYLVQEALDRL--MDGRTVLVIAHH--LSTIKNANMVAVLDQGKI 590
Query: 253 VHHG 256
+G
Sbjct: 591 TEYG 594
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 42/251 (16%)
Query: 32 VDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVS 91
+D ++ + E P ILK++N GE +A VG SG GK+TL++++ + S
Sbjct: 342 IDHVSFQYNDNEAP----ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TS 395
Query: 92 GSVLVNEQPMNITQF-----RRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKA 146
G +L++ NI F R G V QD +LF TVKE ++ L R A
Sbjct: 396 GQILIDGH--NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENIL----------LGRPTA 442
Query: 147 RVSELLKELGLEHVANVXXXX---------XXXXXXXXXXKRRVSIGVDLVHDPAVLLID 197
E+++ + + + K+R+SI +++P +L++D
Sbjct: 443 TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD 502
Query: 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
E TS LD S + L ++ + +T ++ H+ + D+I+++ G +V G+
Sbjct: 503 EATSALDLESESIIQEALDVLS--KDRTTLIVAHR--LSTITHADKIVVIENGHIVETGT 558
Query: 258 LDLLEHRLRIA 268
HR IA
Sbjct: 559 -----HRELIA 564
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 105/240 (43%), Gaps = 14/240 (5%)
Query: 24 LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG 83
LT G+ +F P V +L+ + RPGE+ A+VGP+G+GK+T+ +L
Sbjct: 6 LTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQN 65
Query: 84 MIPLRRVSGSVLVNEQPMNITQFR---RISGYVTQDEVLFPLLTVKETLMYSARLRL--- 137
+ + G +L++ +P+ + R R V Q+ +F +++E + Y +
Sbjct: 66 LY--QPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTME 122
Query: 138 HVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLID 197
+ K+ + L + V ++ V++ L+ P VL++D
Sbjct: 123 EITAAAVKSGAHSFISGLPQGYDTEV---DEAGSQLSGGQRQAVALARALIRKPCVLILD 179
Query: 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
+ TS LD+ S L V LL + ++++L ++E D IL L G + G+
Sbjct: 180 DATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFLEGGAIREGGT 237
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 12/194 (6%)
Query: 66 IVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN-ITQFRRISGYVTQDEVLFPLLT 124
++GP+GAGK+ L+++AG++ R G V +N + + RR G+V QD LFP L+
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDR--GEVRLNGADITPLPPERRGIGFVPQDYALFPHLS 86
Query: 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIG 184
V + Y R V +R ++E +LG+ H+ + ++RV++
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAE---KLGIAHLLD-----RKPARLSGGERQRVALA 138
Query: 185 VDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244
LV P +LL+DEP S +D + + L+++ ++ +L + L D++
Sbjct: 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ-REFDVPILHVTHDLIEAAMLADEV 197
Query: 245 LLLSKGTVVHHGSL 258
++ G +V G L
Sbjct: 198 AVMLNGRIVEKGKL 211
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 105/246 (42%), Gaps = 23/246 (9%)
Query: 28 SFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL 87
+ +G+ +F P V +L+ + PG++ A+VGP+G+GK+T+ +L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-- 69
Query: 88 RRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKAR 147
+ G VL++ +P+ + V +E L++ R ++ +
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAA--------VGQEPLLFGRSFRENIAYGLTRTP 121
Query: 148 VSELLKELGLEHVANV----------XXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLID 197
E + + +E A+ ++ V++ L+ P +L++D
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
+ TS LD+ + L V LL +T++L HQ + E IL L +G+V G+
Sbjct: 182 QATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEGSVCEQGT 239
Query: 258 -LDLLE 262
L L+E
Sbjct: 240 HLQLME 245
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 16/214 (7%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR----RVSGSVLVNEQPMNITQ 105
+L +++ PGEI+ I+G SG GKTTLL LAG +SG + ++ N+
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN-TNLPV 77
Query: 106 FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLK--ELGLEHVANV 163
R GY+ Q+ VLFP LTV + Y GL K R ++ + E LE
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAY--------GLGNGKGRTAQERQRIEAMLELTGIS 129
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQG 223
++R ++ L DP ++L+DEP S LD + + G
Sbjct: 130 ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANG 189
Query: 224 KTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
K+ V H L+ D+I ++ +G ++ S
Sbjct: 190 KSAVFVSHD-REEALQYADRIAVMKQGRILQTAS 222
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 107/226 (47%), Gaps = 21/226 (9%)
Query: 48 VCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM---NIT 104
V L+N+N + G+ +A+VG SG+GK+T+ ++ + G +L++ + +
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE--GEILMDGHDLREYTLA 413
Query: 105 QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLK-----ELGLEH 159
R V+Q+ LF TV + Y+ + AR++ + + GL+
Sbjct: 414 SLRNQVALVSQNVHLFN-DTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDT 472
Query: 160 VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMA 219
V ++R++I L+ D +L++DE TS LD+ S + + L +
Sbjct: 473 VIG-----ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL- 526
Query: 220 VKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSL-DLLEHR 264
++ +T ++ H+ +E D+I+++ G +V G+ DLLEHR
Sbjct: 527 -QKNRTSLVIAHR--LSTIEKADEIVVVEDGVIVERGTHNDLLEHR 569
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 12/209 (5%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI--TQFRR 108
+ +N + GE + ++GPSG GKTT L ++AG+ G + ++ + + R
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKDRN 84
Query: 109 ISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXX 168
IS V Q ++P +TV E + + +++ + RV + L +E + N
Sbjct: 85 IS-MVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELLN-----R 137
Query: 169 XXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVL 228
++RV++ +V +P VLL+DEP S LD+ + + + +K + K T +
Sbjct: 138 YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 197
Query: 229 TIHQPGFRILELFDQILLLSKGTVVHHGS 257
H + + D+I ++++G ++ GS
Sbjct: 198 VTHD-QVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 100/209 (47%), Gaps = 12/209 (5%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI--TQFRR 108
+ +N + GE + ++GPSG GKTT L ++AG+ G + ++ + + R
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--EEPTEGRIYFGDRDVTYLPPKDRN 85
Query: 109 ISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXX 168
IS V Q ++P +TV E + + +++ + RV + L +E + N
Sbjct: 86 IS-MVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELLN-----R 138
Query: 169 XXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVL 228
++RV++ +V +P VLL+DEP S LD+ + + + +K + K T +
Sbjct: 139 YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY 198
Query: 229 TIHQPGFRILELFDQILLLSKGTVVHHGS 257
H + + D+I ++++G ++ GS
Sbjct: 199 VTHDQ-VEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 111/224 (49%), Gaps = 24/224 (10%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI------ 103
+LK V+ +AR G++++I+G SG+GK+T L + + + G+++VN Q +N+
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--EKPSEGAIIVNGQNINLVRDKDG 78
Query: 104 -------TQFRRISGYVT---QDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLK 153
Q R + +T Q L+ +TV E +M + L + + A+ R + L
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 154 ELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS 213
++G++ A ++RVSI L +P VLL DEPTS LD V
Sbjct: 139 KVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 194
Query: 214 LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
+++ +A ++GKT+V+ H+ GF + ++ L +G + G
Sbjct: 195 IMQQLA-EEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGD 236
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 23/246 (9%)
Query: 28 SFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL 87
+ +G+ +F P V +L+ + PG++ A+VGP+G+GK+T+ +L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-- 69
Query: 88 RRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKAR 147
+ G VL++ +P+ + V +E L++ R ++ +
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAA--------VGQEPLLFGRSFRENIAYGLTRTP 121
Query: 148 VSELLKELGLEHVAN----------VXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLID 197
E + + +E A+ ++ V++ L+ P +L++D
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILD 181
Query: 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
TS LD+ + L V LL +T++L Q + E IL L +G+V G+
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEGSVCEQGT 239
Query: 258 -LDLLE 262
L L+E
Sbjct: 240 HLQLME 245
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 103/246 (41%), Gaps = 23/246 (9%)
Query: 28 SFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL 87
+ +G+ +F P V +L+ + PG++ A+VGP+G+GK+T+ +L +
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-- 69
Query: 88 RRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKAR 147
+ G VL++ +P+ + V +E L++ R ++ +
Sbjct: 70 QPTGGKVLLDGEPLVQYDHHYLHTQVAA--------VGQEPLLFGRSFRENIAYGLTRTP 121
Query: 148 VSELLKELGLEHVAN----------VXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLID 197
E + + +E A+ ++ V++ L+ P +L++D
Sbjct: 122 TMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD 181
Query: 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
TS LD+ + L V LL +T++L Q + E IL L +G+V G+
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEGSVCEQGT 239
Query: 258 -LDLLE 262
L L+E
Sbjct: 240 HLQLME 245
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 97/223 (43%), Gaps = 32/223 (14%)
Query: 47 AVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ-----PM 101
A+ +K ++ + G+I+ ++G +GAGKTT L +AG++ R G ++ N Q P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV--RAQKGKIIFNGQDITNKPA 75
Query: 102 NITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV-GLNRAKA-------RVSELLK 153
++ I+ V + +FP LTV E L A R G+ R R+ E LK
Sbjct: 76 HVINRXGIA-LVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLK 134
Query: 154 ELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS 213
+LG ++ ++IG L P +L DEP+ GL V
Sbjct: 135 QLG--------------GTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFE 180
Query: 214 LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256
+++ + Q T +L + Q L++ +L G +V G
Sbjct: 181 VIQ--KINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEG 221
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 111/243 (45%), Gaps = 25/243 (10%)
Query: 48 VCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM---NIT 104
V L+N+N + G+ +A+VG SG+GK+T+ ++ + G +L++ + +
Sbjct: 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE--GHILMDGHDLREYTLA 413
Query: 105 QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLK-----ELGLEH 159
R V+Q+ LF TV + Y+ AR++ + + GL+
Sbjct: 414 SLRNQVALVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDT 472
Query: 160 VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMA 219
+ ++R++I L+ D +L++DE TS LD+ S + + L +
Sbjct: 473 IIG-----ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL- 526
Query: 220 VKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLRIAGHSIPRQVNVL 279
++ +T ++ H+ +E D+I+++ G +V G+ H +A H + Q++ +
Sbjct: 527 -QKNRTSLVIAHR--LSTIEQADEIVVVEDGIIVERGT-----HSELLAQHGVYAQLHKM 578
Query: 280 EFA 282
+F
Sbjct: 579 QFG 581
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQD 116
E R GE++ IVGP+G GKTT + +LAG+ E+P G V D
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGV-------------EEPT--------EGKVEWD 416
Query: 117 -EVLFPLLTVK---ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXX 172
V + +K E +Y ++ + +ELLK LG+ +
Sbjct: 417 LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI-----IDLYDRNVED 471
Query: 173 XXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQ 232
+RV+I L+ D + L+DEP++ LD L V+ ++++ K KT ++ H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 233 PGFRILELFDQILLLSKGTVVHHG 256
+++ L++ +G HG
Sbjct: 532 --VLMIDYVSDRLIVFEGEPGRHG 553
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEV 118
+ G ++ IVGP+G GKTT + ILAG + + N+ N+ R G Q+
Sbjct: 115 KDGMVVGIVGPNGTGKTTAVKILAGQL----IPNLCEDNDSWDNV--IRAFRGNELQN-- 166
Query: 119 LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXK 178
F L E + + K +V ELLK+ ++ V +
Sbjct: 167 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK--VDEVGKFEEVVKELELENVLDR 224
Query: 179 ----------RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVL 228
+RV+I L+ DEP+S LD L VA +++ +A +GK +++
Sbjct: 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-NEGKAVLV 283
Query: 229 TIHQ 232
H
Sbjct: 284 VEHD 287
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 88/204 (43%), Gaps = 32/204 (15%)
Query: 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQD 116
E R GE++ IVGP+G GKTT + +LAG+ E+P G V D
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGV-------------EEPT--------EGKVEWD 402
Query: 117 -EVLFPLLTVK---ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXX 172
V + +K E +Y ++ + +ELLK LG+ +
Sbjct: 403 LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGI-----IDLYDRNVED 457
Query: 173 XXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQ 232
+RV+I L+ D + L+DEP++ LD L V+ ++++ K KT ++ H
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 233 PGFRILELFDQILLLSKGTVVHHG 256
+++ L++ +G HG
Sbjct: 518 --VLMIDYVSDRLIVFEGEPGRHG 539
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 21/184 (11%)
Query: 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEV 118
+ G ++ IVGP+G GKTT + ILAG + + N+ N+ R G Q+
Sbjct: 101 KDGMVVGIVGPNGTGKTTAVKILAGQL----IPNLCEDNDSWDNV--IRAFRGNELQN-- 152
Query: 119 LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXK 178
F L E + + K +V ELLK+ ++ V +
Sbjct: 153 YFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK--VDEVGKFEEVVKELELENVLDR 210
Query: 179 ----------RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVL 228
+RV+I L+ DEP+S LD L VA +++ +A +GK +++
Sbjct: 211 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA-NEGKAVLV 269
Query: 229 TIHQ 232
H
Sbjct: 270 VEHD 273
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 25/222 (11%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV---NEQPMNITQFR 107
LK++N G A+VG +G+GK+T+ +L G + + N N R
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLL---YRFYDAEGDIKIGGKNVNKYNRNSIR 92
Query: 108 RISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXX 167
I G V QD +LF ET+ Y+ L+ L+ V + K L
Sbjct: 93 SIIGIVPQDTILF-----NETIKYNI---LYGKLDATDEEVIKATKSAQLYDFIEALPKK 144
Query: 168 XXXXXXXXXXK------RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVK 221
K +R++I L+ DP +++ DE TS LDS + ++ + +
Sbjct: 145 WDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--R 202
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS-LDLLE 262
+ +T+++ H+ + + I+LL+KG +V G+ DLL+
Sbjct: 203 KNRTLIIIAHR--LSTISSAESIILLNKGKIVEKGTHKDLLK 242
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 96/220 (43%), Gaps = 14/220 (6%)
Query: 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN-EQPMNITQFR 107
ILK VN GE+ A++GP+GAGK+TL ILAG G +L++ E + ++
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 108 RISG---YVTQDEVLFPLLTVKE--TLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN 162
R Q V P +T+ L A+L VG+ +V + L+ L +
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDE--- 133
Query: 163 VXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQ 222
K+R I LV +P ++DE SGLD + VA + M
Sbjct: 134 SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPN 193
Query: 223 GKTIVLTIHQPGFRILELF--DQILLLSKGTVVHHGSLDL 260
+V+T +Q RIL D++ ++ G VV G +L
Sbjct: 194 FGALVITHYQ---RILNYIQPDKVHVMMDGRVVATGGPEL 230
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 77/180 (42%), Gaps = 30/180 (16%)
Query: 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQD 116
E + GE++ IVGP+G GKTT + LAG+ E+P G + D
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGV-------------EEPT--------EGKIEWD 346
Query: 117 -EVLFPLLTVK---ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXX 172
V + +K E +Y ++ + +ELLK LG+ +
Sbjct: 347 LTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI-----IDLYDREVNE 401
Query: 173 XXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQ 232
+RV+I L+ D + L+DEP++ LD L V+ ++++ K KT ++ H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 83/196 (42%), Gaps = 45/196 (22%)
Query: 59 RPGEIMAIVGPSGAGKTTLLDILAG-MIP------------LRRVSGSVLVNE------- 98
+ G ++ IVGP+G GK+T + ILAG +IP +R G+ L N
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 99 --QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELG 156
+P+ Q+ + + +V+ L ET ++ E++K L
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIELLKKADET-----------------GKLEEVVKALE 147
Query: 157 LEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLK 216
LE+V +RV+I L+ + DEP+S LD LN A ++
Sbjct: 148 LENVLEREIQHLSGGEL-----QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIR 202
Query: 217 YMAVKQGKTIVLTIHQ 232
++ ++GK++++ H
Sbjct: 203 RLS-EEGKSVLVVEHD 217
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 22/219 (10%)
Query: 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR----RVSGSVLVNEQPMNIT 104
++ +V+ GE++AI+GP+GAGK+TLL +L G + + G L + QP +
Sbjct: 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALA 84
Query: 105 QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVX 164
+ R + + E+ FP +V E + R G ++ + + +++ + +A
Sbjct: 85 RTRAVMRQYS--ELAFP-FSVSEVIQMG---RAPYGGSQDRQALQQVMAQTDCLALAQ-- 136
Query: 165 XXXXXXXXXXXXXKRRVSIGVDLVH------DPAVLLIDEPTSGLDSASALNVASLLKYM 218
++RV + L P L +DEPTS LD + LL+ +
Sbjct: 137 ---RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193
Query: 219 AVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
++ + +H L D+I+LL++G +V G+
Sbjct: 194 TRQEPLAVCCVLHDLNLAAL-YADRIMLLAQGKLVACGT 231
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRIS 110
L+N+N E GE + I+GP+G+GKTTLL ++G++P SG++ +N M + + R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLP---YSGNIFIN--GMEVRKIRNYI 74
Query: 111 GYVTQDEVLFPL-LTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXXX 169
Y T + + +TV + + L+ GL+R E+LK L L +
Sbjct: 75 RYSTNLPEAYEIGVTVNDIVYLYEELK---GLDR--DLFLEMLKALKLGE--EILRRKLY 127
Query: 170 XXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLT 229
R S+ L P ++ +DEP +D+A ++ +K + GK +L
Sbjct: 128 KLSAGQSVLVRTSLA--LASQPEIVGLDEPFENVDAARRHVISRYIK----EYGKEGILV 181
Query: 230 IHQ 232
H+
Sbjct: 182 THE 184
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 23/190 (12%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRIS 110
L ++ E R GEI+ +VGP+GAGK+TLL +AGM + GS+ QP+ +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK---GSIQFAGQPLEAWSATKLA 72
Query: 111 ---GYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE----LGLEHVANV 163
Y++Q ++T ++ + ++ L++ +ELL + L L+
Sbjct: 73 LHRAYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR 122
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPA--VLLIDEPTSGLDSASALNVASLLKYMAVK 221
V + + +PA +LL+D+P + LD A + +L ++ +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS-Q 181
Query: 222 QGKTIVLTIH 231
QG IV++ H
Sbjct: 182 QGLAIVMSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 88/190 (46%), Gaps = 23/190 (12%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRIS 110
L ++ E R GEI+ +VGP+GAGK+TLL +AGM + GS+ QP+ +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK---GSIQFAGQPLEAWSATKLA 72
Query: 111 ---GYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE----LGLEHVANV 163
Y++Q ++T ++ + ++ L++ +ELL + L L+
Sbjct: 73 LHRAYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR 122
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPA--VLLIDEPTSGLDSASALNVASLLKYMAVK 221
V + + +PA +LL+D+P LD A + +L ++ +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALS-Q 181
Query: 222 QGKTIVLTIH 231
QG IV++ H
Sbjct: 182 QGLAIVMSSH 191
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 63 IMAIVGPSGAGKTTLLDILAGMIPL--RRVSGSVL--------VNEQPMNITQFRRISGY 112
+ AIVG S +GK+T+++ + +P R +SG VL + E+ + +++ I+
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIA-L 94
Query: 113 VTQ--DEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE------LGLEHVANVX 164
V Q + L P + V E + + H G+ + + + E E L E V N
Sbjct: 95 VPQAAQQSLNPTMKVIE--HFKDTVEAH-GVRWSHSELIEKASEKLRMVRLNPEAVLN-- 149
Query: 165 XXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGK 224
K+RV I + L+ DP VL++DEPTS LD + ++ LLK +
Sbjct: 150 ---SYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKI 206
Query: 225 TIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257
T++ H EL D++ ++ G +V + S
Sbjct: 207 TLIFVTHDIAVAA-ELADKVAVIYGGNLVEYNS 238
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 20/228 (8%)
Query: 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRR 108
IL+ ++ + PGE+ AI+GP+G+GK+TL LAG G+V + +
Sbjct: 15 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED 74
Query: 109 ISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKA-RVSELL-----KELGLEHVAN 162
+G +P+ E S + L LN ++ R E L ++L E +A
Sbjct: 75 RAGEGIFMAFQYPV----EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 130
Query: 163 VXXXXXXXXXXXXX-----XKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKY 217
+ K+R I V +P + ++DE SGLD + VA +
Sbjct: 131 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 190
Query: 218 MAVKQGKTIVLTIHQPGFRILELF--DQILLLSKGTVVHHGSLDLLEH 263
+ + I++T +Q RIL+ D + +L +G +V G L++
Sbjct: 191 LRDGKRSFIIVTHYQ---RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 235
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 20/228 (8%)
Query: 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRR 108
IL+ ++ + PGE+ AI+GP+G+GK+TL LAG G+V + +
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPED 93
Query: 109 ISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKA-RVSELL----------KELGL 157
+G +P+ E S + L LN ++ R E L +++ L
Sbjct: 94 RAGEGIFMAFQYPV----EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL 149
Query: 158 EHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKY 217
+ K+R I V +P + ++DE SGLD + VA +
Sbjct: 150 LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS 209
Query: 218 MAVKQGKTIVLTIHQPGFRILELF--DQILLLSKGTVVHHGSLDLLEH 263
+ + I++T +Q RIL+ D + +L +G +V G L++
Sbjct: 210 LRDGKRSFIIVTHYQ---RILDYIKPDYVHVLYQGRIVKSGDFTLVKQ 254
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 23/190 (12%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRIS 110
L ++ E R GEI+ +VGP+GAGK+TLL AG + GS+ QP+ +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGK---GSIQFAGQPLEAWSATKLA 72
Query: 111 ---GYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE----LGLEHVANV 163
Y++Q ++T ++ + ++ L++ +ELL + L L+
Sbjct: 73 LHRAYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR 122
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPA--VLLIDEPTSGLDSASALNVASLLKYMAVK 221
V + + +PA +LL+DEP + LD A + +L ++ +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS-Q 181
Query: 222 QGKTIVLTIH 231
QG IV + H
Sbjct: 182 QGLAIVXSSH 191
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 85/190 (44%), Gaps = 23/190 (12%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRIS 110
L ++ E R GEI+ +VGP+GAGK+TLL AG + GS+ QP+ +++
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGK---GSIQFAGQPLEAWSATKLA 72
Query: 111 ---GYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE----LGLEHVANV 163
Y++Q ++T ++ + ++ L++ +ELL + L L+
Sbjct: 73 LHRAYLSQ----------QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR 122
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPA--VLLIDEPTSGLDSASALNVASLLKYMAVK 221
V + + +PA +LL+DEP + LD A + +L + +
Sbjct: 123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL-CQ 181
Query: 222 QGKTIVLTIH 231
QG IV + H
Sbjct: 182 QGLAIVXSSH 191
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 35/222 (15%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+LK++N + G+++A+ G +GAGKT+LL ++ G + I RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----------PSEGKIKHSGRI 101
Query: 110 SGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH------VANV 163
S + +Q+ + P T+KE + +G++ + R ++K LE +
Sbjct: 102 S-FCSQNSWIMP-GTIKENI---------IGVSYDEYRYRSVIKACQLEEDISKFAEKDN 150
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--ASLLKYMAVK 221
+ R+S+ + D + L+D P LD + + + + K MA
Sbjct: 151 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-- 208
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
KT +L + L+ D+IL+L +G+ +G+ L++
Sbjct: 209 -NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 33/226 (14%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV------LVNEQPMNIT 104
L V+ G++ I+GP+G+GK+TL++++ G L+ G V + N++P +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 105 QFRRISGYVTQDEVLFPL--LTVKETLMYSARLRLHVGLN------------RAKARVSE 150
+ + + T PL +TV E L+ LN + +
Sbjct: 81 HYGIVRTFQTPQ----PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 151 LLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALN 210
+L+ L L H+ + + V IG L+ +P ++++DEP +G+ A +
Sbjct: 137 ILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 211 VASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256
+ + + + K G T ++ H+ +L D + ++ G ++ G
Sbjct: 192 IFNHVLELKAK-GITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ 99
N EA+ GEI+ I+GP+G GKTT IL G I GSV +Q
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARILVGEITAD--EGSVTPEKQ 330
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 8/174 (4%)
Query: 63 IMAIVGPSGAGKTTLLDILAG-MIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFP 121
I+ ++G +G GKTT+L ILAG +IP S + ++ + + + I Y E+
Sbjct: 27 ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK--ELYSN 84
Query: 122 LLTVKETLMYS--ARLRLHVGLNRAKARVSELLKELGLEHVANVXXXXXXXXXXXXXXK- 178
L + + Y A L +N ++ E K+ ++ + N+
Sbjct: 85 ELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGL 144
Query: 179 RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQ 232
+R+ + L+ + V + D+P+S LD +N+A ++ + + K +++ H
Sbjct: 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL--KNKYVIVVDHD 196
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 28/218 (12%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+LKN+N GE++AI G +G+GKT+LL ++ G L G + + + +QF I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGRVSFCSQFSWI 110
Query: 110 SGYVTQDEVLFPLLTVKETLMYSARLR---LHVGLNRAKARVSELLKELGLEHVANVXXX 166
++ ++F + + Y + ++ L + + + + +L E G+
Sbjct: 111 MPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV--------- 159
Query: 167 XXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--ASLLKYMAVKQGK 224
+ R+S+ + D + L+D P LD + V + + K MA K
Sbjct: 160 -----TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA---NK 211
Query: 225 TIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262
T +L + L D+IL+L +G+ +G+ L+
Sbjct: 212 TRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQ 247
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 17/166 (10%)
Query: 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV-LVNEQPMNI---- 103
ILK ++ + G+ + G +GAGKTTLL+IL P SG+V L + P +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKXPGKVGYSA 92
Query: 104 TQFRRISGYVTQD--EVLFPLLTVKETLMYSARLRLHVGLN---RAKARVSELLKELGLE 158
R+ G+V+ E V + ++ A + V + + +LLK +G
Sbjct: 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXS 152
Query: 159 HVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLD 204
A K+RV I L P VL++DEP +GLD
Sbjct: 153 AKAQ-----QYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 35/222 (15%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+LK++N + G+++A+ G +GAGKT+LL ++ G + I RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----------PSEGKIKHSGRI 101
Query: 110 SGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH------VANV 163
S + +Q+ + P T+KE + +G++ + R ++K LE +
Sbjct: 102 S-FCSQNSWIMP-GTIKENI---------IGVSYDEYRYRSVIKACQLEEDISKFAEKDN 150
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--ASLLKYMAVK 221
+ R+S+ + D + L+D P LD + + + + K MA
Sbjct: 151 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-- 208
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
KT +L + L+ D+IL+L +G+ +G+ L++
Sbjct: 209 -NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 36/231 (15%)
Query: 41 WKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100
W+E V LK++N + G+++A+ G +GAGKT+LL ++ G L G
Sbjct: 28 WEEGGTPV--LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEG-------- 75
Query: 101 MNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH- 159
I RIS + +Q + P T+KE +++ G++ + R ++K LE
Sbjct: 76 -KIKHSGRIS-FCSQFSWIMP-GTIKENIIF--------GVSYDEYRYRSVIKACQLEED 124
Query: 160 -----VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--A 212
+ + R+S+ + D + L+D P LD + + +
Sbjct: 125 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 184
Query: 213 SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
+ K MA KT +L + L+ D+IL+L +G+ +G+ L++
Sbjct: 185 CVCKLMA---NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 230
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 28/218 (12%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+LKN+N GE++AI G +G+GKT+LL ++ G L G + + + +QF I
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG--ELEASEGIIKHSGRVSFCSQFSWI 110
Query: 110 SGYVTQDEVLFPLLTVKETLMYSARLR---LHVGLNRAKARVSELLKELGLEHVANVXXX 166
++ ++F + + Y + ++ L + + + + +L E G+
Sbjct: 111 MPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV--------- 159
Query: 167 XXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--ASLLKYMAVKQGK 224
+ R+S+ + D + L+D P LD + V + + K MA K
Sbjct: 160 -----TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA---NK 211
Query: 225 TIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262
T +L + L D+IL+L +G+ +G+ L+
Sbjct: 212 TRILVTSK--MEHLRKADKILILHQGSSYFYGTFSELQ 247
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 36/231 (15%)
Query: 41 WKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100
W+E V LK++N + G+++A+ G +GAGKT+LL ++ G L G
Sbjct: 16 WEEGGTPV--LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEG-------- 63
Query: 101 MNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH- 159
I RIS + +Q + P T+KE +++ G++ + R ++K LE
Sbjct: 64 -KIKHSGRIS-FCSQFSWIMP-GTIKENIIF--------GVSYDEYRYRSVIKACQLEED 112
Query: 160 -----VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--A 212
+ + R+S+ + D + L+D P LD + + +
Sbjct: 113 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172
Query: 213 SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
+ K MA KT +L + L+ D+IL+L +G+ +G+ L++
Sbjct: 173 CVCKLMA---NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 218
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP--MNITQFRR---ISGYV 113
RPG+++ +VG +G GK+T L ILAG ++ ++ P I ++ R + Y
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAG----KQKPNLGRFDDPPEWQEIIKYFRGSELQNYF 156
Query: 114 T---QDE---VLFPLL------TVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA 161
T +D+ ++ P +K + L L + + ++ V +K L LE+V
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGEL-LKLRMEKSPEDVKRYIKILQLENVL 215
Query: 162 NVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYM 218
+R +IG+ V + V + DEP+S LD LN A +++ +
Sbjct: 216 KRDIEKLSGGEL-----QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL 267
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 61 GEIMAIVGPSGAGKTTLLDILAGMI 85
EI+ ++G +G GKTTL+ +LAG +
Sbjct: 378 SEILVMMGENGTGKTTLIKLLAGAL 402
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP 86
+LKN+N GE++AI G +G+GKT+LL ++ G +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP 86
+LKN+N GE++AI G +G+GKT+LL ++ G +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse
Cftr Protein, Deltaf508 Mutant
Length = 285
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP 86
+LKN+N GE++AI G +G+GKT+LL ++ G +
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 89
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 100/231 (43%), Gaps = 37/231 (16%)
Query: 41 WKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100
W+E V LK++N + G+++A+ G +GAGKT+LL ++ G L G
Sbjct: 16 WEEGGTPV--LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEG-------- 63
Query: 101 MNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH- 159
I RIS + +Q + P T+KE + +G++ + R ++K LE
Sbjct: 64 -KIKHSGRIS-FCSQFSWIMP-GTIKENI---------IGVSYDEYRYRSVIKACQLEED 111
Query: 160 -----VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--A 212
+ + R+S+ + D + L+D P LD + + +
Sbjct: 112 ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 171
Query: 213 SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
+ K MA KT +L + L+ D+IL+L +G+ +G+ L++
Sbjct: 172 CVCKLMA---NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 217
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 24/231 (10%)
Query: 35 FNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94
F W + PP L + G ++A+VG G GK++LL L + + +V G V
Sbjct: 11 FTWA---RSDPPT---LNGITFSIPEGALVAVVGQVGCGKSSLLSAL--LAEMDKVEGHV 62
Query: 95 LVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE 154
+ + Q ++ D +++E +++ +L R+ + LL +
Sbjct: 63 AIKGSVAYVPQ----QAWIQND-------SLRENILFGCQLEEP--YYRSVIQACALLPD 109
Query: 155 LGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV-AS 213
L + + K+RVS+ + + + L D+P S +D+ ++ +
Sbjct: 110 LEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 214 LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHR 264
++ + + KT +L H + L D I+++S G + GS L R
Sbjct: 170 VIGPKGMLKNKTRILVTHSMSY--LPQVDVIIVMSGGKISEMGSYQELLAR 218
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 33/226 (14%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV------LVNEQPMNIT 104
L V+ G++ I+GP+G+GK+TL++++ G L+ G V + N++P +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 105 QFRRISGYVTQDEVLFPL--LTVKETLMYSARLRLHVGLN------------RAKARVSE 150
+ + + T PL +TV E L+ LN + +
Sbjct: 81 HYGIVRTFQTPQ----PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 151 LLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALN 210
+L+ L L H+ + + V IG L+ +P ++++DEP +G+ A +
Sbjct: 137 ILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 191
Query: 211 VASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256
+ + + + K G T ++ H+ +L D + ++ G ++ G
Sbjct: 192 IFNHVLELKAK-GITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 33/226 (14%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV------LVNEQPMNIT 104
L V+ G++ I+GP+G+GK+TL++++ G L+ G V + N++P +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--LKADEGRVYFENKDITNKEPAELY 80
Query: 105 QFRRISGYVTQDEVLFPL--LTVKETLMYSARLRLHVGLN------------RAKARVSE 150
+ + + T PL +TV E L+ LN + +
Sbjct: 81 HYGIVRTFQTPQ----PLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFK 136
Query: 151 LLKELGLEHVANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALN 210
+L+ L L H+ + + V IG L+ +P ++++D+P +G+ A +
Sbjct: 137 ILEFLKLSHLYD-----RKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHD 191
Query: 211 VASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256
+ + + + K G T ++ H+ +L D + ++ G ++ G
Sbjct: 192 IFNHVLELKAK-GITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEG 235
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 34/222 (15%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+LK++N + G+++A+ G +GAGKT+LL ++ G L G I RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEG---------KIKHSGRI 101
Query: 110 SGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH------VANV 163
S + +Q + P T+KE ++ G++ + R ++K LE +
Sbjct: 102 S-FCSQFSWIMP-GTIKENII--------AGVSYDEYRYRSVIKACQLEEDISKFAEKDN 151
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--ASLLKYMAVK 221
+ R+S+ + D + L+D P LD + + + + K MA
Sbjct: 152 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-- 209
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
KT +L + L+ D+IL+L +G+ +G+ L++
Sbjct: 210 -NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 248
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 34/222 (15%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+LK++N + G+++A+ G +GAGKT+LL ++ G L G I RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEG---------KIKHSGRI 101
Query: 110 SGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH------VANV 163
S + +Q + P T+KE +++ G++ + R ++K LE +
Sbjct: 102 S-FCSQFSWIMP-GTIKENIIF--------GVSYDEYRYRSVIKACQLEEDISKFAEKDN 151
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--ASLLKYMAVK 221
+ ++S+ + D + L+D P LD + + + + K MA
Sbjct: 152 IVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-- 209
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
KT +L + L+ D+IL+L +G+ +G+ L++
Sbjct: 210 -NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 248
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 35/222 (15%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+LK++N + G+++A+ G +GAGKT+LL ++ G L G I RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMG--ELEPSEG---------KIKHSGRI 101
Query: 110 SGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH------VANV 163
S + +Q + P T+KE + +G++ + R ++K LE +
Sbjct: 102 S-FCSQFSWIMP-GTIKENI---------IGVSYDEYRYRSVIKACQLEEDISKFAEKDN 150
Query: 164 XXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV--ASLLKYMAVK 221
+ ++S+ + D + L+D P LD + + + + K MA
Sbjct: 151 IVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA-- 208
Query: 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEH 263
KT +L + L+ D+IL+L +G+ +G+ L++
Sbjct: 209 -NKTRILVTSK--MEHLKKADKILILHEGSSYFYGTFSELQN 247
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG-MIPLRRVSGSVLVNEQ 99
+ ++N + +A++GP+GAGK+TL+++L G ++P SG V +E
Sbjct: 683 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVYTHEN 729
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYM 218
K ++++ ++ + +LL+DEPT+ LD+ +NVA L+ Y+
Sbjct: 548 KXKLALARAVLRNADILLLDEPTNHLDT---VNVAWLVNYL 585
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ 99
+ ++N + +A++GP+GAGK+TL+++L G L SG V +E
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG--ELLPTSGEVYTHEN 735
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 4/50 (8%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG-MIPLRRVSGSVLVNEQ 99
+ ++N + +A++GP+GAGK+TL+++L G ++P SG V +E
Sbjct: 689 ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP---TSGEVYTHEN 735
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYM 218
K ++++ ++ + +LL+DEPT+ LD+ +NVA L+ Y+
Sbjct: 554 KXKLALARAVLRNADILLLDEPTNHLDT---VNVAWLVNYL 591
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 74/170 (43%), Gaps = 25/170 (14%)
Query: 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE---QPMNITQ 105
IL+N++ PG+ + ++G +G+GK+TL L+ + L G + ++ + + Q
Sbjct: 35 AILENISFSISPGQRVGLLGRTGSGKSTL---LSAFLRLLNTEGEIQIDGVSWDSITLEQ 91
Query: 106 FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKA--RVSELLKELGLEHVANV 163
+R+ G + Q + ++S R ++ N A + + ++ E+GL V
Sbjct: 92 WRKAFGVIPQ-----------KVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQ 140
Query: 164 XXXXXXXX------XXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSAS 207
K+ + + ++ +LL+DEP++ LD +
Sbjct: 141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 193 VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252
IDE S LD+ + +AS+LK + + K IV H F E FD+ L ++ G V
Sbjct: 306 AFFIDEGFSSLDTENKEKIASVLKELE-RLNKVIVFITHDREFS--EAFDRKLRITGGVV 362
Query: 253 VHH 255
V+
Sbjct: 363 VNE 365
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILA 82
LKNV+ E + G I + GP+GAGK++L + ++
Sbjct: 14 LKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 193 VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252
IDE S LD+ + +AS+LK + + K IV H F E FD+ L ++ G V
Sbjct: 306 AFFIDEGFSSLDTENKEKIASVLKELE-RLNKVIVFITHDREFS--EAFDRKLRITGGVV 362
Query: 253 VHH 255
V+
Sbjct: 363 VNE 365
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 20/64 (31%)
Query: 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLL 78
+R ++LT R+F G LKNV+ E + G I + GP+GAGK++L
Sbjct: 1 MRPERLTVRNFLG-------------------LKNVDIEFQSG-ITVVEGPNGAGKSSLF 40
Query: 79 DILA 82
+ ++
Sbjct: 41 EAIS 44
>pdb|3THO|A Chain A, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND
STATE
Length = 382
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 20/67 (29%)
Query: 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKT 75
Q +R ++LT R+F G LKNV+ E + G I + GP+GAGK+
Sbjct: 15 QGHMRPERLTVRNFLG-------------------LKNVDIEFQSG-ITVVEGPNGAGKS 54
Query: 76 TLLDILA 82
+L + ++
Sbjct: 55 SLFEAIS 61
>pdb|3E0G|A Chain A, Structure Of The Leukemia Inhibitory Factor Receptor
(Lif-R) Domains D1-D5
Length = 483
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 20/98 (20%)
Query: 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRIS 110
LK + C PG + A+VGP T + + L+R E P N +
Sbjct: 295 LKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRA-------EAPTNESY----- 342
Query: 111 GYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARV 148
++LF +L +E +Y+ L H L R+++ +
Sbjct: 343 ------QLLFQMLPNQE--IYNFTLNAHNPLGRSQSTI 372
>pdb|1P9R|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
pdb|1P9W|A Chain A, Crystal Structure Of Vibrio Cholerae Putative Ntpase Epse
Length = 418
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN 102
RP I+ + GP+G+GK+T L AG+ L ++L E P+
Sbjct: 165 RPHGIILVTGPTGSGKSTTL--YAGLQELNSSERNILTVEDPIE 206
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 34/183 (18%)
Query: 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRI 109
+L+ + G ++ GP+G GKTTLL ++ L+ + G ++ N P+ ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--LKPLKGEIIYNGVPIT-----KV 76
Query: 110 SGYV--TQDEVLFP-LLTVKETLMYSARLRLHVGLNRAK-------ARVSELLKELGLEH 159
G + +E++ P ++V++ L A L V +N+ + V +L K+LG
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKAVASL-YGVKVNKNEIMDALESVEVLDLKKKLGELS 135
Query: 160 VANVXXXXXXXXXXXXXXKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV-ASLLKYM 218
+ RRV + L+ + + ++D+P +D S V S+L+ +
Sbjct: 136 QGTI---------------RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
Query: 219 AVK 221
K
Sbjct: 181 KEK 183
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 21 TKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMA----IVGPSGAGKTT 76
K++T++ G +E + +E V LK+ + R G M +VGP G GKT
Sbjct: 10 NKRVTFKDVGGAEE-----AIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTL 64
Query: 77 LLDILAGM--IPLRRVSGSVLVN 97
L +AG +P +SGS V
Sbjct: 65 LARAVAGEANVPFFHISGSDFVE 87
>pdb|1PV4|A Chain A, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|B Chain B, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|C Chain C, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|D Chain D, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|E Chain E, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
pdb|1PV4|F Chain F, X-Ray Crystal Structure Of The Rho Transcription
Termination Factor In Complex With Single Stranded Dna
Length = 419
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 61 GEIMAIVGPSGAGKTTLLDILAGMIPLRR---VSGSVLVNEQPMNITQFRR-ISGYV--- 113
G+ IV P AGKT LL +A I V +L++E+P +T+ +R + G V
Sbjct: 171 GQRGLIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVAS 230
Query: 114 TQDEVLFPLLTVKETLMYSAR 134
T DE + V E ++ A+
Sbjct: 231 TFDEPASRHVQVAEXVIEKAK 251
>pdb|3ICE|A Chain A, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|B Chain B, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|C Chain C, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|D Chain D, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|E Chain E, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
pdb|3ICE|F Chain F, Rho Transcription Termination Factor Bound To Rna And
Adp-Bef3
Length = 422
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 61 GEIMAIVGPSGAGKTTLLDILAGMIPLRR---VSGSVLVNEQPMNITQFRR-ISGYV--- 113
G+ IV P AGKT LL +A I V +L++E+P +T+ +R + G V
Sbjct: 174 GQRGLIVAPPKAGKTXLLQNIAQSIAYNHPDCVLXVLLIDERPEEVTEXQRLVKGEVVAS 233
Query: 114 TQDEVLFPLLTVKETLMYSAR 134
T DE + V E ++ A+
Sbjct: 234 TFDEPASRHVQVAEXVIEKAK 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,864,643
Number of Sequences: 62578
Number of extensions: 596083
Number of successful extensions: 2456
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2254
Number of HSP's gapped (non-prelim): 173
length of query: 610
length of database: 14,973,337
effective HSP length: 105
effective length of query: 505
effective length of database: 8,402,647
effective search space: 4243336735
effective search space used: 4243336735
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)