Query 044112
Match_columns 610
No_of_seqs 398 out of 2436
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:35:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 6E-111 1E-115 946.6 62.0 580 13-609 20-612 (613)
2 TIGR00955 3a01204 The Eye Pigm 100.0 3E-106 7E-111 915.7 64.1 560 44-609 35-617 (617)
3 PLN03211 ABC transporter G-25; 100.0 2E-105 3E-110 911.4 66.3 578 14-606 35-659 (659)
4 TIGR00956 3a01205 Pleiotropic 100.0 2E-102 4E-107 946.5 64.9 586 14-605 25-694 (1394)
5 PLN03140 ABC transporter G fam 100.0 5E-101 1E-105 931.7 66.6 583 17-609 866-1470(1470)
6 PLN03140 ABC transporter G fam 100.0 3E-101 6E-106 933.5 63.8 589 11-605 124-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.7E-99 4E-104 920.9 64.4 574 16-609 757-1394(1394)
8 KOG0065 Pleiotropic drug resis 100.0 1.3E-96 3E-101 843.6 38.5 497 46-548 802-1319(1391)
9 KOG0065 Pleiotropic drug resis 100.0 5.1E-92 1.1E-96 805.7 43.3 553 48-605 128-730 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 3.3E-55 7.2E-60 418.6 24.6 218 18-261 2-223 (240)
11 COG1120 FepC ABC-type cobalami 100.0 4E-52 8.7E-57 416.0 21.5 220 18-262 2-227 (258)
12 COG1135 AbcC ABC-type metal io 100.0 8.5E-52 1.8E-56 413.9 22.8 223 18-261 1-229 (339)
13 COG1131 CcmA ABC-type multidru 100.0 2.5E-51 5.5E-56 425.2 26.9 224 18-267 4-230 (293)
14 COG1127 Ttg2A ABC-type transpo 100.0 3.6E-51 7.8E-56 396.6 23.7 222 16-262 6-234 (263)
15 COG1125 OpuBA ABC-type proline 100.0 2.1E-51 4.5E-56 399.8 21.4 219 18-262 1-224 (309)
16 COG3638 ABC-type phosphate/pho 100.0 3.5E-51 7.5E-56 395.7 20.4 225 17-265 2-239 (258)
17 COG1136 SalX ABC-type antimicr 100.0 3.4E-50 7.5E-55 394.6 25.2 211 19-252 2-220 (226)
18 COG3842 PotA ABC-type spermidi 100.0 1.1E-50 2.3E-55 422.4 22.1 235 16-283 3-238 (352)
19 COG1116 TauB ABC-type nitrate/ 100.0 4.6E-50 9.9E-55 394.1 23.0 206 17-250 2-207 (248)
20 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.1E-49 2.4E-54 396.5 24.3 219 17-263 3-227 (254)
21 COG3839 MalK ABC-type sugar tr 100.0 8.8E-50 1.9E-54 413.5 24.0 221 17-263 2-223 (338)
22 COG4555 NatA ABC-type Na+ tran 100.0 3E-50 6.4E-55 379.4 18.4 221 18-264 1-223 (245)
23 COG1118 CysA ABC-type sulfate/ 100.0 1.9E-49 4E-54 396.1 20.2 221 17-262 1-226 (345)
24 PRK13537 nodulation ABC transp 100.0 1.1E-47 2.4E-52 401.0 28.0 220 17-263 6-227 (306)
25 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-47 2.6E-52 386.5 26.8 218 19-261 1-224 (235)
26 COG2884 FtsE Predicted ATPase 100.0 2E-48 4.2E-53 364.2 19.4 214 18-257 1-220 (223)
27 TIGR02314 ABC_MetN D-methionin 100.0 2.2E-47 4.8E-52 403.0 28.3 223 18-262 1-229 (343)
28 TIGR03265 PhnT2 putative 2-ami 100.0 2.3E-47 5E-52 405.2 28.3 220 17-262 3-223 (353)
29 PRK11650 ugpC glycerol-3-phosp 100.0 2.7E-47 5.8E-52 405.1 28.0 220 18-262 3-223 (356)
30 PRK11432 fbpC ferric transport 100.0 3.6E-47 7.9E-52 403.1 28.7 220 17-262 5-225 (351)
31 COG1117 PstB ABC-type phosphat 100.0 5.3E-48 1.1E-52 367.5 19.3 236 16-282 5-248 (253)
32 COG1124 DppF ABC-type dipeptid 100.0 1.9E-47 4.1E-52 372.4 22.2 223 17-263 2-231 (252)
33 PRK13536 nodulation factor exp 100.0 1E-46 2.2E-51 398.4 29.6 222 16-264 39-262 (340)
34 COG1122 CbiO ABC-type cobalt t 100.0 3.7E-47 7.9E-52 379.6 24.2 223 17-264 2-229 (235)
35 TIGR03258 PhnT 2-aminoethylpho 100.0 8.9E-47 1.9E-51 401.4 28.1 219 18-262 5-227 (362)
36 PRK10851 sulfate/thiosulfate t 100.0 1E-46 2.2E-51 400.3 28.1 220 18-262 2-225 (353)
37 COG1137 YhbG ABC-type (unclass 100.0 2E-48 4.4E-53 366.6 12.6 220 17-262 3-227 (243)
38 PRK09452 potA putrescine/sperm 100.0 1.5E-46 3.3E-51 401.1 28.4 220 17-262 13-233 (375)
39 COG0411 LivG ABC-type branched 100.0 2.1E-47 4.5E-52 372.4 19.5 222 17-263 3-239 (250)
40 PRK11607 potG putrescine trans 100.0 2.9E-46 6.3E-51 399.6 30.0 221 16-262 17-238 (377)
41 cd03259 ABC_Carb_Solutes_like 100.0 2E-46 4.3E-51 371.9 25.3 212 19-256 1-213 (213)
42 cd03265 ABC_DrrA DrrA is the A 100.0 2.7E-46 5.9E-51 372.9 26.3 216 19-260 1-218 (220)
43 cd03296 ABC_CysA_sulfate_impor 100.0 3.8E-46 8.3E-51 376.5 27.4 219 18-261 2-224 (239)
44 TIGR01288 nodI ATP-binding ABC 100.0 5.2E-46 1.1E-50 388.4 28.3 220 17-263 3-224 (303)
45 PRK11153 metN DL-methionine tr 100.0 4.3E-46 9.3E-51 394.9 28.0 223 18-262 1-229 (343)
46 PRK11000 maltose/maltodextrin 100.0 4.6E-46 9.9E-51 398.0 28.3 219 18-262 3-222 (369)
47 COG3840 ThiQ ABC-type thiamine 100.0 7.2E-47 1.6E-51 351.0 18.9 216 19-262 2-218 (231)
48 cd03219 ABC_Mj1267_LivG_branch 100.0 6.8E-46 1.5E-50 373.8 26.0 217 19-261 1-230 (236)
49 cd03293 ABC_NrtD_SsuB_transpor 100.0 8.8E-46 1.9E-50 369.2 26.5 217 19-259 1-219 (220)
50 cd03301 ABC_MalK_N The N-termi 100.0 7.6E-46 1.7E-50 367.6 25.8 212 19-256 1-213 (213)
51 cd03256 ABC_PhnC_transporter A 100.0 9.7E-46 2.1E-50 373.7 26.2 220 19-262 1-233 (241)
52 COG0410 LivF ABC-type branched 100.0 3.8E-46 8.3E-51 360.9 22.2 220 17-263 2-226 (237)
53 PRK11831 putative ABC transpor 100.0 1.5E-45 3.3E-50 378.6 27.7 220 17-261 6-231 (269)
54 TIGR03522 GldA_ABC_ATP gliding 100.0 1.5E-45 3.2E-50 384.5 27.8 218 18-263 2-221 (301)
55 cd03258 ABC_MetN_methionine_tr 100.0 1.3E-45 2.9E-50 371.0 26.1 222 18-261 1-228 (233)
56 cd03260 ABC_PstB_phosphate_tra 100.0 7.5E-46 1.6E-50 371.4 24.0 216 19-260 1-226 (227)
57 PRK13637 cbiO cobalt transport 100.0 2.8E-45 6.1E-50 380.0 29.1 224 18-262 2-233 (287)
58 TIGR00960 3a0501s02 Type II (G 100.0 1E-45 2.2E-50 367.6 24.4 210 18-252 1-216 (216)
59 TIGR02315 ABC_phnC phosphonate 100.0 1.1E-45 2.3E-50 374.0 24.1 220 18-261 1-233 (243)
60 cd03218 ABC_YhbG The ABC trans 100.0 2.2E-45 4.9E-50 369.0 26.3 216 19-261 1-220 (232)
61 PRK13643 cbiO cobalt transport 100.0 3.8E-45 8.2E-50 379.2 28.8 241 18-281 1-254 (288)
62 PRK09493 glnQ glutamine ABC tr 100.0 2.7E-45 5.9E-50 370.5 26.9 218 18-261 1-223 (240)
63 PRK11264 putative amino-acid A 100.0 2.9E-45 6.2E-50 372.5 27.0 218 18-261 3-231 (250)
64 TIGR01188 drrA daunorubicin re 100.0 1.6E-45 3.5E-50 384.5 25.5 206 49-264 7-214 (302)
65 PRK09536 btuD corrinoid ABC tr 100.0 2.2E-45 4.7E-50 394.6 26.8 219 18-262 3-227 (402)
66 cd03263 ABC_subfamily_A The AB 100.0 2.4E-45 5.2E-50 365.9 25.2 217 19-261 1-219 (220)
67 cd03269 ABC_putative_ATPase Th 100.0 2.2E-45 4.8E-50 363.6 24.8 210 19-256 1-210 (210)
68 cd03295 ABC_OpuCA_Osmoprotecti 100.0 3.3E-45 7.1E-50 370.4 26.5 218 19-261 1-223 (242)
69 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.6E-45 3.4E-50 366.7 23.8 211 19-252 1-218 (218)
70 PRK13634 cbiO cobalt transport 100.0 5.7E-45 1.2E-49 378.2 28.1 234 18-273 2-248 (290)
71 TIGR01186 proV glycine betaine 100.0 3.3E-45 7.3E-50 388.6 26.3 205 49-262 7-218 (363)
72 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 8.7E-45 1.9E-49 365.9 27.8 218 18-262 1-220 (236)
73 PRK13650 cbiO cobalt transport 100.0 8.5E-45 1.8E-49 374.9 28.1 221 18-262 4-228 (279)
74 PRK11629 lolD lipoprotein tran 100.0 9.3E-45 2E-49 365.0 27.5 218 18-258 5-229 (233)
75 cd03266 ABC_NatA_sodium_export 100.0 5.4E-45 1.2E-49 362.8 25.5 216 18-256 1-218 (218)
76 cd03268 ABC_BcrA_bacitracin_re 100.0 3.1E-45 6.7E-50 362.1 23.1 207 19-256 1-208 (208)
77 PRK13647 cbiO cobalt transport 100.0 1.4E-44 3.1E-49 372.4 28.5 218 18-261 4-225 (274)
78 cd03224 ABC_TM1139_LivF_branch 100.0 5E-45 1.1E-49 363.9 24.4 214 19-261 1-219 (222)
79 PRK15079 oligopeptide ABC tran 100.0 1.1E-44 2.3E-49 381.9 28.2 235 16-262 6-250 (331)
80 PRK13631 cbiO cobalt transport 100.0 2.1E-44 4.6E-49 378.1 29.9 239 12-273 15-278 (320)
81 PRK10895 lipopolysaccharide AB 100.0 8.4E-45 1.8E-49 367.1 25.6 219 18-262 3-225 (241)
82 TIGR00972 3a0107s01c2 phosphat 100.0 1.6E-44 3.5E-49 366.5 27.5 218 18-261 1-230 (247)
83 PRK13646 cbiO cobalt transport 100.0 1.4E-44 3E-49 374.6 27.5 223 18-262 2-234 (286)
84 COG4152 ABC-type uncharacteriz 100.0 1.7E-45 3.6E-50 356.4 19.0 221 18-266 2-222 (300)
85 TIGR03005 ectoine_ehuA ectoine 100.0 1.5E-44 3.2E-49 367.8 26.8 218 19-261 1-234 (252)
86 PRK10619 histidine/lysine/argi 100.0 2E-44 4.4E-49 367.9 27.7 218 18-261 5-239 (257)
87 PRK13651 cobalt transporter AT 100.0 2.2E-44 4.9E-49 375.7 28.4 223 18-262 2-253 (305)
88 cd03226 ABC_cobalt_CbiO_domain 100.0 4.6E-45 1E-49 360.1 22.0 204 20-253 1-205 (205)
89 PRK11124 artP arginine transpo 100.0 2E-44 4.3E-49 364.6 26.7 217 18-261 2-228 (242)
90 cd03262 ABC_HisP_GlnQ_permease 100.0 1.2E-44 2.5E-49 359.1 24.2 208 19-252 1-213 (213)
91 cd03257 ABC_NikE_OppD_transpor 100.0 1.8E-44 3.9E-49 361.3 25.8 218 18-256 1-228 (228)
92 PRK11248 tauB taurine transpor 100.0 2.3E-44 5E-49 367.0 27.0 214 18-259 1-216 (255)
93 PRK13636 cbiO cobalt transport 100.0 3.7E-44 8E-49 371.0 28.8 220 18-262 5-230 (283)
94 TIGR02673 FtsE cell division A 100.0 1.5E-44 3.3E-49 358.6 24.8 208 18-251 1-214 (214)
95 PRK11300 livG leucine/isoleuci 100.0 2.2E-44 4.8E-49 367.0 26.7 219 18-261 5-241 (255)
96 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.3E-44 2.7E-49 371.8 24.4 205 49-262 38-249 (269)
97 PRK11614 livF leucine/isoleuci 100.0 1.9E-44 4.2E-49 363.6 25.3 217 17-262 4-225 (237)
98 PRK10070 glycine betaine trans 100.0 2.5E-44 5.5E-49 386.1 27.7 235 18-262 4-253 (400)
99 PRK11247 ssuB aliphatic sulfon 100.0 2E-44 4.3E-49 367.5 25.6 209 17-259 11-219 (257)
100 PRK13548 hmuV hemin importer A 100.0 2.7E-44 5.8E-49 367.2 26.6 219 18-262 2-229 (258)
101 cd03292 ABC_FtsE_transporter F 100.0 1.9E-44 4E-49 357.9 24.6 208 19-252 1-214 (214)
102 PRK11308 dppF dipeptide transp 100.0 4.3E-44 9.4E-49 376.8 28.4 231 17-262 4-243 (327)
103 PRK14273 phosphate ABC transpo 100.0 4.5E-44 9.9E-49 364.6 27.7 219 18-262 7-237 (254)
104 cd03264 ABC_drug_resistance_li 100.0 1.7E-44 3.7E-49 357.5 23.8 209 19-256 1-211 (211)
105 PRK11022 dppD dipeptide transp 100.0 5E-44 1.1E-48 376.4 28.4 226 18-262 3-242 (326)
106 PRK13635 cbiO cobalt transport 100.0 5.5E-44 1.2E-48 368.8 28.1 220 18-262 5-228 (279)
107 PRK14268 phosphate ABC transpo 100.0 6.7E-44 1.5E-48 364.3 28.2 218 17-261 11-240 (258)
108 PRK13641 cbiO cobalt transport 100.0 4.8E-44 1E-48 370.8 27.4 222 18-262 2-233 (287)
109 PRK13652 cbiO cobalt transport 100.0 5.6E-44 1.2E-48 368.5 27.7 220 18-262 3-226 (277)
110 TIGR02769 nickel_nikE nickel i 100.0 4.9E-44 1.1E-48 366.7 27.0 229 18-262 2-239 (265)
111 TIGR02211 LolD_lipo_ex lipopro 100.0 3.6E-44 7.9E-49 357.6 25.2 212 19-253 2-220 (221)
112 PRK10253 iron-enterobactin tra 100.0 3.8E-44 8.3E-49 367.5 25.5 222 16-262 5-232 (265)
113 PRK13638 cbiO cobalt transport 100.0 7.7E-44 1.7E-48 366.4 27.9 218 18-262 1-224 (271)
114 PRK09473 oppD oligopeptide tra 100.0 9E-44 1.9E-48 374.9 29.0 230 17-262 11-250 (330)
115 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.4E-44 7.3E-49 355.4 24.2 210 19-256 1-211 (211)
116 cd03234 ABCG_White The White s 100.0 6.8E-44 1.5E-48 357.1 26.6 218 18-256 3-226 (226)
117 TIGR03411 urea_trans_UrtD urea 100.0 6.1E-44 1.3E-48 361.0 26.5 217 18-261 2-229 (242)
118 PRK14267 phosphate ABC transpo 100.0 7.8E-44 1.7E-48 362.6 27.4 220 18-262 4-236 (253)
119 PRK14247 phosphate ABC transpo 100.0 8.3E-44 1.8E-48 361.8 27.4 219 18-261 3-232 (250)
120 COG4559 ABC-type hemin transpo 100.0 1.3E-44 2.9E-49 343.7 19.9 219 18-262 1-229 (259)
121 PRK10575 iron-hydroxamate tran 100.0 5.4E-44 1.2E-48 366.4 25.8 221 17-262 10-236 (265)
122 PRK10908 cell division protein 100.0 6.8E-44 1.5E-48 356.1 25.7 210 18-253 1-216 (222)
123 TIGR03410 urea_trans_UrtE urea 100.0 3.7E-44 8.1E-49 359.8 23.8 214 19-261 1-219 (230)
124 PRK14245 phosphate ABC transpo 100.0 1.1E-43 2.3E-48 361.0 27.4 224 17-262 2-233 (250)
125 PRK13649 cbiO cobalt transport 100.0 1.4E-43 3.1E-48 366.1 28.6 222 18-262 2-233 (280)
126 PRK13644 cbiO cobalt transport 100.0 7.3E-44 1.6E-48 367.1 26.2 218 18-262 1-223 (274)
127 PRK11231 fecE iron-dicitrate t 100.0 6.4E-44 1.4E-48 363.8 25.5 218 18-261 2-225 (255)
128 PRK13632 cbiO cobalt transport 100.0 9.8E-44 2.1E-48 365.6 27.0 222 16-262 5-230 (271)
129 cd03225 ABC_cobalt_CbiO_domain 100.0 4.2E-44 9E-49 354.7 23.2 207 20-251 1-211 (211)
130 PRK14250 phosphate ABC transpo 100.0 6.8E-44 1.5E-48 360.6 25.1 214 17-261 2-219 (241)
131 COG0444 DppD ABC-type dipeptid 100.0 5.9E-44 1.3E-48 362.3 24.6 228 19-262 2-242 (316)
132 PRK10771 thiQ thiamine transpo 100.0 1E-43 2.2E-48 357.2 26.1 217 18-262 1-218 (232)
133 PRK15112 antimicrobial peptide 100.0 1.1E-43 2.3E-48 364.6 26.6 229 18-262 4-238 (267)
134 PRK14242 phosphate transporter 100.0 1.6E-43 3.4E-48 360.4 27.6 223 17-261 5-235 (253)
135 PRK09984 phosphonate/organopho 100.0 8.8E-44 1.9E-48 364.2 25.8 221 18-261 4-240 (262)
136 TIGR01257 rim_protein retinal- 100.0 1.3E-41 2.8E-46 415.7 49.5 224 16-265 926-1151(2272)
137 TIGR01978 sufC FeS assembly AT 100.0 9.9E-44 2.2E-48 359.4 25.8 219 19-262 1-233 (243)
138 PRK13648 cbiO cobalt transport 100.0 2.2E-43 4.7E-48 362.7 28.6 231 18-273 7-244 (269)
139 cd03235 ABC_Metallic_Cations A 100.0 3.1E-44 6.6E-49 356.3 21.4 207 21-256 2-213 (213)
140 PRK13639 cbiO cobalt transport 100.0 2.4E-43 5.2E-48 363.5 28.6 219 18-262 1-225 (275)
141 PRK13633 cobalt transporter AT 100.0 1.9E-43 4E-48 365.2 27.6 224 18-262 4-232 (280)
142 PRK10584 putative ABC transpor 100.0 1.9E-43 4.1E-48 354.2 26.9 216 17-255 5-227 (228)
143 PRK14241 phosphate transporter 100.0 2E-43 4.4E-48 360.7 27.6 220 18-262 4-241 (258)
144 PRK10744 pstB phosphate transp 100.0 1.9E-43 4.2E-48 361.3 27.2 223 14-262 9-243 (260)
145 PRK11144 modC molybdate transp 100.0 1.2E-43 2.6E-48 377.5 26.6 210 18-262 1-217 (352)
146 TIGR01277 thiQ thiamine ABC tr 100.0 1.5E-43 3.2E-48 351.5 25.5 211 19-257 1-212 (213)
147 PRK13645 cbiO cobalt transport 100.0 1.8E-43 3.8E-48 367.1 27.1 223 18-262 6-239 (289)
148 PRK13640 cbiO cobalt transport 100.0 2.7E-43 5.8E-48 364.4 28.3 223 17-262 4-231 (282)
149 cd03300 ABC_PotA_N PotA is an 100.0 2.3E-43 5E-48 354.7 27.0 217 19-261 1-218 (232)
150 TIGR02142 modC_ABC molybdenum 100.0 1.8E-43 3.9E-48 376.6 26.7 199 53-262 15-220 (354)
151 TIGR03740 galliderm_ABC gallid 100.0 1.5E-43 3.3E-48 353.8 24.3 210 19-260 1-210 (223)
152 TIGR03415 ABC_choXWV_ATP choli 100.0 1.5E-43 3.2E-48 377.7 25.5 234 19-262 1-253 (382)
153 TIGR00968 3a0106s01 sulfate AB 100.0 3.6E-43 7.7E-48 354.5 26.5 218 19-262 1-219 (237)
154 PRK14269 phosphate ABC transpo 100.0 3.4E-43 7.4E-48 356.5 26.5 218 18-261 2-228 (246)
155 TIGR03873 F420-0_ABC_ATP propo 100.0 2.4E-43 5.3E-48 359.7 25.5 217 19-261 2-224 (256)
156 PRK14274 phosphate ABC transpo 100.0 4.6E-43 9.9E-48 358.3 27.3 221 16-262 10-242 (259)
157 PRK15093 antimicrobial peptide 100.0 4.6E-43 1E-47 370.0 28.0 226 18-262 3-247 (330)
158 PRK14256 phosphate ABC transpo 100.0 5.5E-43 1.2E-47 356.3 27.6 219 18-261 4-234 (252)
159 PRK14237 phosphate transporter 100.0 6.9E-43 1.5E-47 358.6 28.3 227 13-261 15-249 (267)
160 PRK11701 phnK phosphonate C-P 100.0 4.9E-43 1.1E-47 357.9 27.0 219 18-261 6-239 (258)
161 PRK14235 phosphate transporter 100.0 5.6E-43 1.2E-47 359.2 27.4 219 17-261 18-249 (267)
162 PRK14270 phosphate ABC transpo 100.0 6.1E-43 1.3E-47 355.7 27.2 219 17-261 3-233 (251)
163 cd03297 ABC_ModC_molybdenum_tr 100.0 3.7E-43 7.9E-48 348.9 24.8 206 19-256 2-214 (214)
164 PRK14248 phosphate ABC transpo 100.0 7.3E-43 1.6E-47 358.6 27.7 224 12-261 15-250 (268)
165 PRK14239 phosphate transporter 100.0 7.8E-43 1.7E-47 355.0 27.5 218 18-261 5-234 (252)
166 PRK14272 phosphate ABC transpo 100.0 9.3E-43 2E-47 354.4 27.9 221 17-262 3-235 (252)
167 PRK13642 cbiO cobalt transport 100.0 9.6E-43 2.1E-47 359.4 28.2 221 18-262 4-228 (277)
168 PRK14262 phosphate ABC transpo 100.0 7.9E-43 1.7E-47 354.6 26.9 223 18-262 3-233 (250)
169 PRK14240 phosphate transporter 100.0 1E-42 2.2E-47 353.8 27.6 218 18-261 3-232 (250)
170 PRK13547 hmuV hemin importer A 100.0 4.8E-43 1E-47 360.3 25.4 221 18-261 1-242 (272)
171 cd03267 ABC_NatA_like Similar 100.0 4.4E-43 9.6E-48 353.6 24.4 227 20-256 2-236 (236)
172 PRK14253 phosphate ABC transpo 100.0 8.8E-43 1.9E-47 354.1 26.6 218 18-261 3-231 (249)
173 PRK14236 phosphate transporter 100.0 1.5E-42 3.2E-47 357.1 28.5 221 15-261 22-254 (272)
174 PRK14258 phosphate ABC transpo 100.0 1.4E-42 3.1E-47 355.1 28.0 225 18-262 7-244 (261)
175 cd03299 ABC_ModC_like Archeal 100.0 1.2E-42 2.6E-47 350.2 27.0 216 19-261 1-217 (235)
176 PRK14259 phosphate ABC transpo 100.0 9.9E-43 2.2E-47 357.7 26.4 218 17-262 12-252 (269)
177 COG4604 CeuD ABC-type enteroch 100.0 1.5E-44 3.2E-49 339.5 11.5 220 18-262 1-224 (252)
178 TIGR02982 heterocyst_DevA ABC 100.0 9E-43 2E-47 347.6 24.9 212 19-252 2-219 (220)
179 TIGR01184 ntrCD nitrate transp 100.0 5.2E-43 1.1E-47 351.7 23.3 200 51-260 1-201 (230)
180 PRK13549 xylose transporter AT 100.0 5.7E-43 1.2E-47 390.3 25.9 220 18-261 5-230 (506)
181 COG4181 Predicted ABC-type tra 100.0 1.8E-43 4E-48 325.1 17.5 214 18-254 6-226 (228)
182 COG4525 TauB ABC-type taurine 100.0 6.1E-43 1.3E-47 328.0 21.1 221 18-264 3-225 (259)
183 PRK14261 phosphate ABC transpo 100.0 2.3E-42 5E-47 351.9 27.3 218 18-261 6-235 (253)
184 PRK14251 phosphate ABC transpo 100.0 2.1E-42 4.5E-47 351.8 27.0 218 18-261 4-233 (251)
185 PRK14275 phosphate ABC transpo 100.0 2.8E-42 6E-47 357.4 28.2 220 16-261 37-268 (286)
186 TIGR02770 nickel_nikD nickel i 100.0 1.1E-42 2.3E-47 349.4 24.4 206 50-262 1-214 (230)
187 PRK14260 phosphate ABC transpo 100.0 2.2E-42 4.8E-47 353.3 26.9 218 18-261 7-241 (259)
188 TIGR02323 CP_lyasePhnK phospho 100.0 1.9E-42 4.1E-47 352.4 26.3 219 18-261 3-236 (253)
189 COG1123 ATPase components of v 100.0 1.3E-42 2.8E-47 376.1 26.3 229 18-263 5-244 (539)
190 PRK10419 nikE nickel transport 100.0 2.4E-42 5.1E-47 354.8 26.7 228 18-261 3-239 (268)
191 PRK14255 phosphate ABC transpo 100.0 3.7E-42 8E-47 350.1 27.9 220 16-261 3-234 (252)
192 PRK10418 nikD nickel transport 100.0 2.7E-42 5.8E-47 351.7 26.9 218 18-262 4-229 (254)
193 PRK14271 phosphate ABC transpo 100.0 3.1E-42 6.7E-47 355.3 27.6 224 17-262 20-250 (276)
194 COG4175 ProV ABC-type proline/ 100.0 1.8E-43 3.9E-48 353.4 17.6 236 17-262 3-253 (386)
195 PRK10762 D-ribose transporter 100.0 1E-42 2.2E-47 387.8 25.7 218 18-261 4-228 (501)
196 PRK14249 phosphate ABC transpo 100.0 3.7E-42 8E-47 350.0 27.1 222 18-261 4-233 (251)
197 PRK14238 phosphate transporter 100.0 3.4E-42 7.3E-47 354.2 26.9 219 17-261 23-253 (271)
198 PRK14244 phosphate ABC transpo 100.0 3E-42 6.4E-47 350.7 26.1 221 19-261 6-235 (251)
199 cd03233 ABC_PDR_domain1 The pl 100.0 2.3E-42 5.1E-47 340.2 24.5 197 18-256 3-202 (202)
200 PRK15439 autoinducer 2 ABC tra 100.0 2E-42 4.2E-47 386.1 26.9 213 18-261 11-227 (510)
201 PRK09700 D-allose transporter 100.0 1.9E-42 4E-47 386.6 25.4 218 18-261 5-232 (510)
202 KOG0058 Peptide exporter, ABC 100.0 8.5E-43 1.8E-47 382.4 22.0 221 16-263 463-691 (716)
203 PRK10247 putative ABC transpor 100.0 2.6E-42 5.7E-47 345.5 23.1 210 18-257 7-221 (225)
204 PRK10261 glutathione transport 100.0 4E-42 8.7E-47 391.5 27.6 226 16-262 10-257 (623)
205 TIGR03608 L_ocin_972_ABC putat 100.0 3.5E-42 7.6E-47 339.5 23.5 199 21-247 1-206 (206)
206 COG2274 SunT ABC-type bacterio 100.0 1.1E-42 2.5E-47 394.5 22.7 218 17-264 470-697 (709)
207 PRK10261 glutathione transport 100.0 5.3E-42 1.1E-46 390.6 28.1 232 17-262 312-552 (623)
208 PRK14254 phosphate ABC transpo 100.0 9.7E-42 2.1E-46 353.1 27.4 219 15-261 36-267 (285)
209 COG4988 CydD ABC-type transpor 100.0 1.7E-42 3.7E-47 373.6 22.3 218 14-262 316-542 (559)
210 PRK14265 phosphate ABC transpo 100.0 1.3E-41 2.8E-46 350.4 27.6 224 11-262 13-257 (274)
211 PRK14246 phosphate ABC transpo 100.0 9.5E-42 2.1E-46 348.1 26.4 220 16-262 8-240 (257)
212 PRK14266 phosphate ABC transpo 100.0 1.2E-41 2.7E-46 345.8 26.6 223 17-261 2-232 (250)
213 PRK13543 cytochrome c biogenes 100.0 7.6E-42 1.7E-46 339.6 24.4 203 17-249 10-212 (214)
214 CHL00131 ycf16 sulfate ABC tra 100.0 1.7E-41 3.7E-46 345.1 27.5 222 15-261 4-239 (252)
215 cd03252 ABCC_Hemolysin The ABC 100.0 2.6E-42 5.7E-47 347.9 21.0 214 19-262 1-224 (237)
216 PRK15056 manganese/iron transp 100.0 8.2E-42 1.8E-46 351.5 24.9 219 17-261 5-228 (272)
217 COG4598 HisP ABC-type histidin 100.0 6E-43 1.3E-47 323.9 14.6 219 17-261 5-239 (256)
218 PRK14263 phosphate ABC transpo 100.0 2.3E-41 5E-46 346.1 27.4 223 16-262 6-244 (261)
219 cd03213 ABCG_EPDR ABCG transpo 100.0 1.5E-41 3.3E-46 332.3 24.7 191 17-256 2-194 (194)
220 PRK14257 phosphate ABC transpo 100.0 2.2E-41 4.7E-46 356.4 27.7 225 17-262 79-312 (329)
221 PRK11174 cysteine/glutathione 100.0 5.3E-42 1.1E-46 389.4 24.7 214 17-262 348-571 (588)
222 PRK14243 phosphate transporter 100.0 2.4E-41 5.3E-46 346.5 26.6 217 18-262 10-247 (264)
223 PRK13538 cytochrome c biogenes 100.0 1.2E-41 2.7E-46 335.5 23.5 200 18-247 1-202 (204)
224 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-41 3.4E-46 331.7 23.9 189 18-256 3-192 (192)
225 TIGR02633 xylG D-xylose ABC tr 100.0 1.2E-41 2.5E-46 379.3 26.2 218 19-260 2-227 (500)
226 PRK15134 microcin C ABC transp 100.0 1.8E-41 3.9E-46 380.2 27.2 226 18-262 5-245 (529)
227 COG1123 ATPase components of v 100.0 1.3E-41 2.9E-46 368.2 25.1 234 15-262 277-518 (539)
228 TIGR03269 met_CoM_red_A2 methy 100.0 1.8E-41 3.9E-46 379.5 27.1 220 19-264 1-259 (520)
229 PRK15134 microcin C ABC transp 100.0 1.3E-41 2.9E-46 381.2 26.0 231 17-262 274-514 (529)
230 PRK14252 phosphate ABC transpo 100.0 5.1E-41 1.1E-45 344.4 27.9 220 16-261 14-247 (265)
231 cd03245 ABCC_bacteriocin_expor 100.0 8.4E-42 1.8E-46 340.4 21.2 209 19-256 3-220 (220)
232 TIGR01257 rim_protein retinal- 100.0 1.5E-41 3.3E-46 415.2 28.0 225 17-266 1936-2162(2272)
233 cd03251 ABCC_MsbA MsbA is an e 100.0 8.1E-42 1.8E-46 343.7 21.1 215 19-263 1-225 (234)
234 TIGR03269 met_CoM_red_A2 methy 100.0 2.5E-41 5.4E-46 378.4 26.9 226 16-263 277-517 (520)
235 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.5E-41 3.3E-46 392.0 25.8 212 18-262 451-672 (686)
236 PRK10982 galactose/methyl gala 100.0 1.6E-41 3.5E-46 377.4 24.6 214 22-261 2-221 (491)
237 PRK11176 lipid transporter ATP 100.0 1.3E-41 2.9E-46 385.7 24.4 216 18-262 341-566 (582)
238 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1.2E-41 2.7E-46 343.3 21.4 216 19-263 1-226 (238)
239 PRK11288 araG L-arabinose tran 100.0 2.7E-41 5.9E-46 376.4 26.1 215 18-258 4-224 (501)
240 cd03254 ABCC_Glucan_exporter_l 100.0 1.4E-41 3E-46 340.9 21.4 215 18-262 2-225 (229)
241 COG4161 ArtP ABC-type arginine 100.0 8.2E-42 1.8E-46 311.2 17.5 217 18-260 2-227 (242)
242 cd03231 ABC_CcmA_heme_exporter 100.0 3.1E-41 6.7E-46 332.0 22.5 196 19-247 1-198 (201)
243 PRK09580 sufC cysteine desulfu 100.0 9.5E-41 2.1E-45 338.8 26.6 227 18-270 1-241 (248)
244 KOG0055 Multidrug/pheromone ex 100.0 1.4E-39 3.1E-44 375.1 38.8 219 16-263 348-576 (1228)
245 PRK10790 putative multidrug tr 100.0 5.8E-41 1.3E-45 381.2 26.8 214 17-262 339-562 (592)
246 PRK09544 znuC high-affinity zi 100.0 6.4E-41 1.4E-45 340.8 24.1 203 18-262 4-208 (251)
247 cd03230 ABC_DR_subfamily_A Thi 100.0 4.7E-41 1E-45 322.9 21.8 171 19-252 1-173 (173)
248 PRK14264 phosphate ABC transpo 100.0 1.5E-40 3.3E-45 347.4 27.4 223 17-261 44-287 (305)
249 PRK13539 cytochrome c biogenes 100.0 5.9E-41 1.3E-45 331.5 22.7 199 18-249 2-200 (207)
250 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.6E-41 1E-45 336.3 21.8 192 45-256 33-224 (224)
251 KOG0057 Mitochondrial Fe/S clu 100.0 2.4E-41 5.2E-46 359.5 20.8 214 18-263 351-574 (591)
252 PRK03695 vitamin B12-transport 100.0 8.3E-41 1.8E-45 339.5 24.0 200 50-261 11-220 (248)
253 PRK13549 xylose transporter AT 100.0 5E-41 1.1E-45 374.6 24.2 222 17-261 258-492 (506)
254 PRK11160 cysteine/glutathione 100.0 5.5E-41 1.2E-45 379.5 24.8 216 17-262 337-561 (574)
255 cd03289 ABCC_CFTR2 The CFTR su 100.0 6.8E-41 1.5E-45 344.2 23.2 215 18-263 2-225 (275)
256 PRK13546 teichoic acids export 100.0 3.1E-40 6.8E-45 337.8 27.9 226 17-263 3-232 (264)
257 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 2.9E-41 6.2E-46 391.2 22.4 215 17-263 476-700 (710)
258 TIGR00958 3a01208 Conjugate Tr 100.0 5E-41 1.1E-45 388.4 24.0 216 17-263 477-702 (711)
259 cd03253 ABCC_ATM1_transporter 100.0 5.6E-41 1.2E-45 338.0 21.1 213 19-262 1-223 (236)
260 COG4987 CydC ABC-type transpor 100.0 1.2E-41 2.7E-46 361.5 17.0 216 18-263 336-561 (573)
261 cd03229 ABC_Class3 This class 100.0 7.2E-41 1.6E-45 323.1 20.7 173 19-251 1-178 (178)
262 TIGR03375 type_I_sec_LssB type 100.0 7E-41 1.5E-45 387.0 24.5 217 18-264 463-689 (694)
263 TIGR01193 bacteriocin_ABC ABC- 100.0 6.7E-41 1.4E-45 387.9 24.1 215 18-263 473-697 (708)
264 TIGR01189 ccmA heme ABC export 100.0 1.3E-40 2.8E-45 326.8 22.2 195 19-246 1-197 (198)
265 cd03244 ABCC_MRP_domain2 Domai 100.0 1.1E-40 2.4E-45 332.5 21.3 208 19-257 3-220 (221)
266 PRK09700 D-allose transporter 100.0 1E-40 2.2E-45 372.7 23.2 214 17-258 264-493 (510)
267 TIGR02324 CP_lyasePhnL phospho 100.0 2.4E-40 5.3E-45 330.8 23.5 211 18-248 1-223 (224)
268 COG1132 MdlB ABC-type multidru 100.0 1.4E-40 3E-45 376.1 24.2 218 17-263 327-552 (567)
269 PRK10938 putative molybdenum t 100.0 1.1E-40 2.5E-45 370.5 22.8 210 18-262 3-223 (490)
270 cd03248 ABCC_TAP TAP, the Tran 100.0 7.6E-41 1.7E-45 334.9 19.3 210 16-252 9-226 (226)
271 PRK13540 cytochrome c biogenes 100.0 1.8E-40 3.9E-45 326.3 21.6 195 18-245 1-197 (200)
272 COG1129 MglA ABC-type sugar tr 100.0 2.2E-40 4.8E-45 356.5 24.1 216 16-257 6-228 (500)
273 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.7E-40 5.9E-45 325.0 22.5 188 19-265 1-195 (200)
274 COG4148 ModC ABC-type molybdat 100.0 2.3E-41 4.9E-46 333.1 14.4 195 53-262 16-217 (352)
275 TIGR02633 xylG D-xylose ABC tr 100.0 3.3E-40 7.1E-45 367.7 24.6 221 17-260 256-489 (500)
276 PRK13657 cyclic beta-1,2-gluca 100.0 3E-40 6.5E-45 374.9 24.2 214 18-262 334-557 (588)
277 COG4172 ABC-type uncharacteriz 100.0 8E-40 1.7E-44 335.7 24.6 240 8-262 266-515 (534)
278 TIGR01166 cbiO cobalt transpor 100.0 4E-40 8.6E-45 321.1 21.4 177 49-234 6-188 (190)
279 cd03215 ABC_Carb_Monos_II This 100.0 5E-40 1.1E-44 318.4 21.5 172 18-252 4-182 (182)
280 TIGR02203 MsbA_lipidA lipid A 100.0 2.9E-40 6.4E-45 373.9 23.2 216 18-262 330-555 (571)
281 cd03288 ABCC_SUR2 The SUR doma 100.0 5.4E-40 1.2E-44 335.3 22.6 214 18-262 19-242 (257)
282 TIGR01842 type_I_sec_PrtD type 100.0 7E-40 1.5E-44 368.6 24.9 217 17-262 315-541 (544)
283 PRK10762 D-ribose transporter 100.0 1E-39 2.2E-44 363.7 25.8 204 49-261 266-482 (501)
284 cd03246 ABCC_Protease_Secretio 100.0 5.4E-40 1.2E-44 315.6 20.0 170 19-252 1-173 (173)
285 PRK13545 tagH teichoic acids e 100.0 2.7E-39 5.9E-44 351.5 27.9 196 49-264 38-233 (549)
286 cd03214 ABC_Iron-Siderophores_ 100.0 3.5E-40 7.6E-45 318.9 18.6 177 20-256 1-180 (180)
287 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.1E-39 2.4E-44 322.2 22.5 199 18-258 6-207 (207)
288 cd03247 ABCC_cytochrome_bd The 100.0 7E-40 1.5E-44 316.2 20.2 176 19-256 1-178 (178)
289 TIGR01187 potA spermidine/putr 100.0 1E-39 2.2E-44 343.9 23.1 188 66-262 1-189 (325)
290 TIGR03771 anch_rpt_ABC anchore 100.0 9.2E-40 2E-44 326.7 21.5 195 56-262 1-200 (223)
291 TIGR01846 type_I_sec_HlyB type 100.0 6.4E-40 1.4E-44 378.9 22.9 216 17-262 454-679 (694)
292 COG4619 ABC-type uncharacteriz 100.0 5.7E-41 1.2E-45 307.8 10.6 195 45-252 14-212 (223)
293 PRK11288 araG L-arabinose tran 100.0 9.3E-40 2E-44 364.0 22.7 204 49-261 267-483 (501)
294 COG0396 sufC Cysteine desulfur 100.0 4.6E-39 1E-43 310.4 24.3 232 17-272 2-242 (251)
295 TIGR02204 MsbA_rel ABC transpo 100.0 1.4E-39 3E-44 368.8 23.9 217 17-262 336-562 (576)
296 PRK10535 macrolide transporter 100.0 2.1E-38 4.5E-43 362.4 32.6 220 18-261 4-230 (648)
297 PRK10789 putative multidrug tr 100.0 1.5E-39 3.2E-44 367.6 22.8 215 18-262 313-537 (569)
298 TIGR01192 chvA glucan exporter 100.0 2.2E-39 4.8E-44 367.1 23.6 214 18-262 334-557 (585)
299 COG3845 ABC-type uncharacteriz 100.0 3.1E-39 6.7E-44 341.0 21.9 215 17-257 3-223 (501)
300 COG4586 ABC-type uncharacteriz 100.0 9.9E-40 2.2E-44 321.0 16.6 241 17-266 2-249 (325)
301 PRK15439 autoinducer 2 ABC tra 100.0 3.9E-39 8.4E-44 359.6 23.3 203 50-261 278-490 (510)
302 cd03250 ABCC_MRP_domain1 Domai 100.0 4.7E-39 1E-43 317.1 20.0 194 19-251 1-204 (204)
303 PTZ00265 multidrug resistance 100.0 2.3E-39 4.9E-44 395.5 21.6 220 18-262 1165-1451(1466)
304 PRK13541 cytochrome c biogenes 100.0 1.1E-38 2.4E-43 312.3 22.0 193 18-245 1-193 (195)
305 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-38 2.7E-43 317.3 21.9 201 20-251 2-218 (218)
306 cd03228 ABCC_MRP_Like The MRP 100.0 9.6E-39 2.1E-43 306.3 19.8 168 19-251 1-171 (171)
307 COG4674 Uncharacterized ABC-ty 100.0 3.1E-39 6.8E-44 303.2 15.9 219 17-262 4-234 (249)
308 TIGR02868 CydC thiol reductant 100.0 6.4E-39 1.4E-43 359.8 20.8 188 17-233 333-529 (529)
309 cd03216 ABC_Carb_Monos_I This 100.0 2.1E-38 4.5E-43 301.7 21.1 158 19-254 1-162 (163)
310 PRK10938 putative molybdenum t 100.0 1.1E-38 2.3E-43 354.8 22.1 218 16-257 258-486 (490)
311 PRK15064 ABC transporter ATP-b 100.0 2.5E-38 5.4E-43 354.9 25.0 208 18-262 1-241 (530)
312 COG4618 ArpD ABC-type protease 100.0 1.9E-38 4E-43 334.4 21.8 227 13-266 329-563 (580)
313 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.8E-38 1E-42 318.6 23.8 190 49-260 8-204 (246)
314 KOG0055 Multidrug/pheromone ex 100.0 1.3E-38 2.8E-43 367.2 21.6 217 18-263 987-1213(1228)
315 PRK11819 putative ABC transpor 100.0 5.6E-38 1.2E-42 353.6 26.2 208 17-261 5-248 (556)
316 PLN03130 ABC transporter C fam 100.0 2.8E-38 6.1E-43 389.2 25.8 215 18-263 1237-1461(1622)
317 PRK10982 galactose/methyl gala 100.0 3.1E-38 6.7E-43 351.0 23.8 214 17-259 249-476 (491)
318 PRK10522 multidrug transporter 100.0 2.7E-38 5.9E-43 355.9 23.5 206 18-255 322-530 (547)
319 PRK15177 Vi polysaccharide exp 100.0 3.3E-38 7E-43 313.3 21.1 195 49-267 1-196 (213)
320 TIGR02857 CydD thiol reductant 100.0 1.5E-38 3.1E-43 356.9 20.2 200 18-247 320-529 (529)
321 PLN03232 ABC transporter C fam 100.0 2.4E-38 5.2E-43 389.4 23.5 214 18-262 1234-1457(1495)
322 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8E-38 1.7E-42 352.2 25.4 209 17-262 3-247 (552)
323 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.7E-37 3.7E-42 320.1 25.6 203 15-262 36-246 (282)
324 cd03223 ABCD_peroxisomal_ALDP 100.0 5.9E-38 1.3E-42 299.4 20.6 164 19-251 1-164 (166)
325 PRK15064 ABC transporter ATP-b 100.0 8.7E-38 1.9E-42 350.5 24.0 203 17-262 318-524 (530)
326 COG4172 ABC-type uncharacteriz 100.0 1.1E-37 2.4E-42 320.0 22.1 231 16-262 4-246 (534)
327 COG1119 ModF ABC-type molybden 100.0 4.5E-38 9.7E-43 307.0 17.4 217 16-257 29-256 (257)
328 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.4E-37 3E-42 350.5 23.5 211 17-255 336-551 (555)
329 PTZ00243 ABC transporter; Prov 100.0 1.3E-37 2.8E-42 382.8 24.2 214 18-262 1308-1532(1560)
330 TIGR00957 MRP_assoc_pro multi 100.0 1.6E-37 3.5E-42 382.6 24.2 216 17-263 1283-1508(1522)
331 PTZ00265 multidrug resistance 100.0 1.1E-37 2.3E-42 380.8 21.5 213 18-250 382-655 (1466)
332 PRK11819 putative ABC transpor 100.0 8.9E-37 1.9E-41 343.9 26.0 206 16-261 322-531 (556)
333 PRK13409 putative ATPase RIL; 100.0 5.5E-37 1.2E-41 345.6 24.2 200 16-258 338-537 (590)
334 COG4608 AppF ABC-type oligopep 100.0 5.9E-37 1.3E-41 305.2 20.4 195 17-262 3-198 (268)
335 KOG0056 Heavy metal exporter H 100.0 1.1E-37 2.4E-42 324.9 15.6 223 14-263 533-761 (790)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.6E-36 3.4E-41 341.7 26.0 205 16-260 320-528 (552)
337 COG1101 PhnK ABC-type uncharac 100.0 4.2E-37 9.1E-42 293.2 16.5 217 19-256 2-231 (263)
338 TIGR01271 CFTR_protein cystic 100.0 1.2E-36 2.5E-41 374.0 24.7 214 17-262 1216-1439(1490)
339 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.2E-36 2.6E-41 309.7 19.3 189 49-255 15-219 (255)
340 PRK10636 putative ABC transpor 100.0 4.3E-36 9.4E-41 342.5 24.6 204 16-263 310-517 (638)
341 PRK11147 ABC transporter ATPas 100.0 7E-36 1.5E-40 341.3 24.0 207 15-261 316-526 (635)
342 COG1134 TagH ABC-type polysacc 100.0 3E-35 6.4E-40 287.6 23.8 231 17-267 2-240 (249)
343 KOG0059 Lipid exporter ABCA1 a 100.0 5.2E-36 1.1E-40 351.9 20.2 224 17-266 563-790 (885)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.4E-35 3E-40 276.5 19.0 144 19-251 1-144 (144)
345 PLN03073 ABC transporter F fam 100.0 4.7E-35 1E-39 335.7 26.3 207 17-264 507-715 (718)
346 TIGR00954 3a01203 Peroxysomal 100.0 1E-35 2.2E-40 340.6 20.8 199 18-249 451-653 (659)
347 cd03222 ABC_RNaseL_inhibitor T 100.0 1.6E-35 3.6E-40 284.6 18.8 147 45-259 11-159 (177)
348 PRK10636 putative ABC transpor 100.0 2.9E-35 6.2E-40 335.8 23.1 206 18-261 1-234 (638)
349 COG4167 SapF ABC-type antimicr 100.0 2.1E-35 4.6E-40 274.4 17.6 229 18-262 4-238 (267)
350 PLN03232 ABC transporter C fam 100.0 4.4E-35 9.5E-40 360.7 23.1 206 18-262 614-827 (1495)
351 COG4133 CcmA ABC-type transpor 100.0 2E-35 4.3E-40 276.9 14.4 189 18-235 2-192 (209)
352 COG4136 ABC-type uncharacteriz 100.0 2.2E-35 4.7E-40 266.3 14.1 194 18-235 2-197 (213)
353 PRK11147 ABC transporter ATPas 100.0 1.7E-34 3.7E-39 329.9 24.7 205 18-261 3-241 (635)
354 PLN03130 ABC transporter C fam 100.0 7E-35 1.5E-39 359.3 23.1 205 18-262 614-827 (1622)
355 cd03238 ABC_UvrA The excision 100.0 3.5E-34 7.5E-39 275.2 19.5 156 49-253 9-167 (176)
356 cd00267 ABC_ATPase ABC (ATP-bi 100.0 5.5E-34 1.2E-38 269.3 19.5 153 21-251 2-157 (157)
357 COG4107 PhnK ABC-type phosphon 100.0 1.7E-34 3.6E-39 266.5 15.2 216 18-262 6-240 (258)
358 PRK13409 putative ATPase RIL; 100.0 1.7E-34 3.7E-39 325.4 17.6 181 49-250 88-287 (590)
359 COG5265 ATM1 ABC-type transpor 100.0 1.6E-34 3.5E-39 298.7 14.0 218 17-263 261-486 (497)
360 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-33 2.4E-38 348.8 23.9 210 18-262 636-849 (1522)
361 TIGR01271 CFTR_protein cystic 100.0 3.8E-33 8.2E-38 343.1 23.9 188 49-262 440-635 (1490)
362 COG0488 Uup ATPase components 100.0 1.1E-32 2.4E-37 304.0 20.6 207 17-261 2-238 (530)
363 PLN03073 ABC transporter F fam 100.0 1.1E-32 2.3E-37 316.3 19.4 219 14-261 173-429 (718)
364 KOG0054 Multidrug resistance-a 100.0 5.6E-30 1.2E-34 302.3 35.9 211 13-262 513-730 (1381)
365 PTZ00243 ABC transporter; Prov 100.0 1.1E-31 2.5E-36 330.4 21.6 189 49-262 674-869 (1560)
366 KOG0054 Multidrug resistance-a 100.0 1.9E-31 4E-36 314.7 20.7 216 17-263 1137-1362(1381)
367 cd03270 ABC_UvrA_I The excisio 100.0 5.4E-31 1.2E-35 263.9 20.8 189 49-256 9-226 (226)
368 PF00005 ABC_tran: ABC transpo 100.0 8.8E-32 1.9E-36 247.8 13.0 134 51-201 1-137 (137)
369 COG4778 PhnL ABC-type phosphon 100.0 1.3E-31 2.8E-36 246.6 13.3 214 17-249 3-227 (235)
370 cd03271 ABC_UvrA_II The excisi 100.0 3.1E-30 6.7E-35 262.2 19.4 195 49-258 9-261 (261)
371 COG4138 BtuD ABC-type cobalami 100.0 2.8E-31 6E-36 245.4 6.7 197 50-262 14-220 (248)
372 COG0488 Uup ATPase components 100.0 1.4E-29 3E-34 279.4 21.1 206 14-263 317-525 (530)
373 COG1129 MglA ABC-type sugar tr 100.0 2.3E-29 5E-34 271.4 21.1 201 50-259 274-486 (500)
374 cd03278 ABC_SMC_barmotin Barmo 100.0 9.5E-30 2E-34 249.5 13.4 166 52-249 14-190 (197)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 1.7E-28 3.6E-33 248.3 13.6 181 49-248 16-234 (243)
376 COG4615 PvdE ABC-type sideroph 99.9 3.6E-28 7.7E-33 249.3 10.9 207 17-256 321-530 (546)
377 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.7E-29 1.2E-33 246.7 2.4 177 45-249 15-204 (212)
378 COG3845 ABC-type uncharacteriz 99.9 3E-26 6.4E-31 242.8 21.3 221 16-261 255-490 (501)
379 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.4E-27 3E-32 243.1 10.6 178 61-248 25-242 (251)
380 cd03240 ABC_Rad50 The catalyti 99.9 3.8E-27 8.3E-32 232.3 12.9 167 53-249 15-197 (204)
381 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.5E-26 3.3E-31 229.7 12.4 180 52-251 18-210 (213)
382 COG4178 ABC-type uncharacteriz 99.9 6.6E-26 1.4E-30 249.1 17.9 198 16-249 390-588 (604)
383 PRK00635 excinuclease ABC subu 99.9 2.3E-25 4.9E-30 269.8 23.1 205 49-262 609-905 (1809)
384 PRK00349 uvrA excinuclease ABC 99.9 5.2E-25 1.1E-29 256.9 21.8 126 122-262 791-926 (943)
385 COG4170 SapD ABC-type antimicr 99.9 4.9E-26 1.1E-30 216.2 10.4 230 18-263 3-248 (330)
386 KOG0927 Predicted transporter 99.9 1.9E-25 4E-30 237.7 12.4 206 15-262 386-595 (614)
387 COG1245 Predicted ATPase, RNas 99.9 1.1E-24 2.4E-29 227.4 17.1 175 50-248 356-530 (591)
388 TIGR00630 uvra excinuclease AB 99.9 9.6E-24 2.1E-28 245.9 22.9 125 122-261 789-923 (924)
389 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.4E-24 5.2E-29 211.4 14.6 171 51-251 12-192 (198)
390 KOG0927 Predicted transporter 99.9 2E-24 4.3E-29 229.9 12.8 214 17-262 74-308 (614)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 3.3E-24 7.2E-29 217.7 9.4 181 59-249 21-233 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.9 1.7E-22 3.6E-27 216.7 17.0 206 15-249 430-641 (659)
393 KOG0066 eIF2-interacting prote 99.9 2E-22 4.2E-27 208.7 13.6 193 17-252 585-779 (807)
394 KOG2355 Predicted ABC-type tra 99.9 8.1E-22 1.8E-26 187.1 16.5 215 15-264 10-238 (291)
395 PF01061 ABC2_membrane: ABC-2 99.9 8.6E-24 1.9E-28 206.9 1.5 208 332-544 1-210 (210)
396 KOG0062 ATPase component of AB 99.9 4.5E-22 9.7E-27 211.0 12.1 206 14-262 76-284 (582)
397 KOG0062 ATPase component of AB 99.9 4.2E-21 9E-26 203.7 15.6 213 8-260 352-566 (582)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.9 3.6E-21 7.7E-26 191.0 13.5 170 51-251 14-211 (213)
399 COG1245 Predicted ATPase, RNas 99.8 3.3E-21 7.2E-26 201.5 10.2 170 58-249 97-288 (591)
400 cd03280 ABC_MutS2 MutS2 homolo 99.8 1.3E-20 2.7E-25 185.4 13.5 147 50-256 16-172 (200)
401 cd03239 ABC_SMC_head The struc 99.8 2.7E-19 5.8E-24 172.7 15.6 74 173-249 95-172 (178)
402 cd03283 ABC_MutS-like MutS-lik 99.8 4.6E-20 1E-24 181.1 9.0 145 49-246 15-162 (199)
403 COG2401 ABC-type ATPase fused 99.8 1.4E-19 3.1E-24 187.2 12.2 188 44-253 393-588 (593)
404 cd03285 ABC_MSH2_euk MutS2 hom 99.8 5.6E-20 1.2E-24 183.6 8.8 152 49-257 18-175 (222)
405 cd03241 ABC_RecN RecN ATPase i 99.8 1.1E-19 2.3E-24 187.7 11.1 75 172-250 170-248 (276)
406 PRK00635 excinuclease ABC subu 99.8 2E-18 4.4E-23 209.9 20.8 197 50-263 1505-1796(1809)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 2.8E-19 6E-24 170.0 10.4 75 172-249 77-155 (162)
408 KOG0064 Peroxisomal long-chain 99.8 1.3E-19 2.9E-24 192.0 7.6 176 49-247 496-681 (728)
409 COG0178 UvrA Excinuclease ATPa 99.8 4.3E-18 9.2E-23 189.1 16.9 128 122-263 783-919 (935)
410 PRK00349 uvrA excinuclease ABC 99.7 9.2E-18 2E-22 196.5 15.0 134 120-262 434-584 (943)
411 cd03243 ABC_MutS_homologs The 99.7 2.5E-18 5.4E-23 169.3 7.5 155 53-260 21-176 (202)
412 TIGR00630 uvra excinuclease AB 99.7 2.6E-17 5.7E-22 192.3 15.7 133 121-262 433-582 (924)
413 cd03242 ABC_RecF RecF is a rec 99.7 9.8E-17 2.1E-21 165.1 16.7 77 170-252 181-269 (270)
414 KOG0066 eIF2-interacting prote 99.7 2.6E-18 5.6E-23 178.4 2.5 219 14-260 260-496 (807)
415 cd03282 ABC_MSH4_euk MutS4 hom 99.7 3.7E-17 8.1E-22 161.0 9.1 135 49-234 17-152 (204)
416 KOG0063 RNAse L inhibitor, ABC 99.7 4.3E-16 9.2E-21 162.1 13.4 209 16-248 318-531 (592)
417 TIGR02858 spore_III_AA stage I 99.6 8.8E-16 1.9E-20 157.1 11.1 139 62-260 112-266 (270)
418 cd03284 ABC_MutS1 MutS1 homolo 99.6 8.3E-16 1.8E-20 152.9 10.5 158 49-261 19-179 (216)
419 TIGR01247 drrB daunorubicin re 99.6 1.2E-12 2.5E-17 132.0 24.6 228 340-599 1-234 (236)
420 smart00534 MUTSac ATPase domai 99.5 3E-15 6.6E-20 145.4 5.1 81 171-254 60-141 (185)
421 PRK00064 recF recombination pr 99.5 2.2E-13 4.7E-18 145.8 18.5 79 169-252 270-359 (361)
422 PF02463 SMC_N: RecF/RecN/SMC 99.5 7.4E-15 1.6E-19 146.3 3.8 88 146-248 121-212 (220)
423 KOG0063 RNAse L inhibitor, ABC 99.5 1.1E-13 2.3E-18 144.5 10.2 176 59-249 98-288 (592)
424 TIGR01291 nodJ ABC-2 type tran 99.5 2.7E-11 5.9E-16 123.6 27.4 238 334-605 7-251 (253)
425 cd03281 ABC_MSH5_euk MutS5 hom 99.5 2.2E-13 4.7E-18 135.3 11.5 132 49-235 17-156 (213)
426 TIGR00025 Mtu_efflux ABC trans 99.5 1.8E-11 3.9E-16 123.1 25.6 223 346-603 2-230 (232)
427 TIGR03062 pip_yhgE_Cterm YhgE/ 99.5 1.9E-12 4.2E-17 127.8 17.9 151 424-606 58-208 (208)
428 cd00820 PEPCK_HprK Phosphoenol 99.4 1.7E-13 3.8E-18 120.0 6.1 73 49-132 3-78 (107)
429 TIGR01069 mutS2 MutS2 family p 99.4 3E-13 6.5E-18 156.8 9.1 130 54-235 314-447 (771)
430 cd03287 ABC_MSH3_euk MutS3 hom 99.4 1.3E-12 2.7E-17 130.4 12.1 140 49-241 19-160 (222)
431 TIGR03861 phenyl_ABC_PedC alco 99.4 1.7E-10 3.7E-15 117.5 27.4 237 331-603 1-250 (253)
432 PTZ00132 GTP-binding nuclear p 99.4 8E-13 1.7E-17 131.2 8.0 45 176-220 156-205 (215)
433 PRK07721 fliI flagellum-specif 99.4 8E-12 1.7E-16 135.9 14.7 172 49-260 147-340 (438)
434 TIGR00634 recN DNA repair prot 99.3 4.4E-12 9.5E-17 143.5 9.2 77 171-251 439-519 (563)
435 PRK10869 recombination and rep 99.3 1.1E-11 2.3E-16 139.5 10.1 76 171-250 429-508 (553)
436 PRK00409 recombination and DNA 99.3 4.9E-12 1.1E-16 147.1 7.3 81 171-255 389-470 (782)
437 cd01128 rho_factor Transcripti 99.3 3.4E-12 7.4E-17 129.3 5.2 174 56-252 11-211 (249)
438 PRK08533 flagellar accessory p 99.3 4E-11 8.6E-16 120.6 12.6 151 56-248 19-184 (230)
439 PRK15066 inner membrane transp 99.3 6.2E-09 1.4E-13 106.4 28.7 243 331-606 7-254 (257)
440 COG0178 UvrA Excinuclease ATPa 99.3 6.6E-11 1.4E-15 132.5 15.1 136 120-263 426-577 (935)
441 PF13304 AAA_21: AAA domain; P 99.2 1.2E-11 2.7E-16 123.0 7.4 64 170-234 234-300 (303)
442 TIGR00618 sbcc exonuclease Sbc 99.2 2.3E-11 4.9E-16 147.1 11.0 80 169-250 947-1036(1042)
443 PHA02562 46 endonuclease subun 99.2 1.5E-11 3.2E-16 139.5 8.9 79 169-252 465-555 (562)
444 cd03286 ABC_MSH6_euk MutS6 hom 99.2 4.4E-11 9.5E-16 119.0 10.9 135 49-235 18-155 (218)
445 cd01124 KaiC KaiC is a circadi 99.2 2.9E-10 6.3E-15 109.9 12.7 145 63-248 1-163 (187)
446 TIGR02788 VirB11 P-type DNA tr 99.2 1.2E-10 2.7E-15 122.1 10.6 142 54-262 137-280 (308)
447 PRK13695 putative NTPase; Prov 99.1 2.8E-11 6.1E-16 116.3 3.8 78 171-255 77-156 (174)
448 cd01120 RecA-like_NTPases RecA 99.1 3.1E-10 6.7E-15 106.1 8.8 63 172-235 67-139 (165)
449 PRK13830 conjugal transfer pro 99.1 8.5E-10 1.9E-14 129.8 13.7 69 188-258 650-728 (818)
450 COG3910 Predicted ATPase [Gene 99.1 1.9E-09 4.1E-14 102.1 13.0 83 165-251 122-205 (233)
451 PRK03918 chromosome segregatio 99.1 3.8E-10 8.3E-15 134.7 9.8 78 169-249 785-868 (880)
452 PRK10246 exonuclease subunit S 99.0 7E-10 1.5E-14 133.8 10.4 79 169-249 946-1032(1047)
453 PRK01156 chromosome segregatio 99.0 8.3E-10 1.8E-14 132.0 10.7 78 169-248 798-883 (895)
454 COG0842 ABC-type multidrug tra 99.0 9.6E-08 2.1E-12 97.3 23.5 169 410-607 116-285 (286)
455 PRK06793 fliI flagellum-specif 99.0 2.4E-09 5.1E-14 116.0 12.0 154 49-257 145-305 (432)
456 TIGR00606 rad50 rad50. This fa 99.0 1.4E-09 3E-14 134.3 10.6 71 170-241 1197-1277(1311)
457 cd01125 repA Hexameric Replica 98.9 5.8E-09 1.3E-13 105.5 11.9 138 61-234 1-160 (239)
458 PRK06067 flagellar accessory p 98.9 3.9E-08 8.4E-13 99.1 15.3 162 50-249 13-187 (234)
459 TIGR02168 SMC_prok_B chromosom 98.9 2.5E-09 5.5E-14 131.0 7.8 76 169-248 1086-1165(1179)
460 cd01131 PilT Pilus retraction 98.9 1.1E-08 2.4E-13 100.5 10.5 57 182-248 66-122 (198)
461 PRK06995 flhF flagellar biosyn 98.8 1.1E-08 2.4E-13 112.3 10.0 151 49-231 244-400 (484)
462 TIGR03238 dnd_assoc_3 dnd syst 98.8 2.8E-09 6.2E-14 115.2 5.2 50 49-102 20-70 (504)
463 smart00382 AAA ATPases associa 98.8 2E-07 4.3E-12 83.8 15.2 119 60-231 1-124 (148)
464 TIGR02169 SMC_prok_A chromosom 98.8 9.2E-09 2E-13 126.2 8.3 77 169-249 1071-1151(1164)
465 PRK02224 chromosome segregatio 98.8 1.4E-08 3E-13 121.4 9.2 78 170-250 779-869 (880)
466 TIGR01248 drrC daunorubicin re 98.8 1.9E-07 4.2E-12 87.8 14.5 130 408-540 15-146 (152)
467 PRK13891 conjugal transfer pro 98.7 1.4E-07 3.1E-12 111.6 14.8 69 183-253 680-751 (852)
468 cd01130 VirB11-like_ATPase Typ 98.7 5.4E-08 1.2E-12 94.6 8.1 84 50-135 14-99 (186)
469 TIGR02655 circ_KaiC circadian 98.7 5.5E-09 1.2E-13 116.3 1.3 167 49-248 8-190 (484)
470 TIGR03881 KaiC_arch_4 KaiC dom 98.6 3.1E-08 6.7E-13 99.3 5.5 163 50-248 8-188 (229)
471 PRK07196 fliI flagellum-specif 98.6 4.8E-08 1E-12 105.9 6.5 169 49-255 144-333 (434)
472 TIGR00611 recf recF protein. A 98.6 8.3E-08 1.8E-12 103.0 7.0 60 171-234 274-342 (365)
473 TIGR01420 pilT_fam pilus retra 98.6 2.8E-07 6.1E-12 98.3 10.5 125 58-248 119-243 (343)
474 PRK05399 DNA mismatch repair p 98.5 1.6E-07 3.4E-12 111.0 8.6 138 49-243 596-738 (854)
475 PRK06002 fliI flagellum-specif 98.5 2.1E-07 4.5E-12 101.1 8.3 86 14-118 135-230 (450)
476 TIGR01026 fliI_yscN ATPase Fli 98.5 6.8E-07 1.5E-11 97.7 12.2 174 49-261 152-346 (440)
477 PRK14079 recF recombination pr 98.5 2.8E-07 6E-12 98.5 7.7 77 171-256 262-347 (349)
478 COG0419 SbcC ATPase involved i 98.4 5.5E-07 1.2E-11 107.8 9.8 78 169-249 812-897 (908)
479 cd02023 UMPK Uridine monophosp 98.4 2.2E-07 4.7E-12 91.1 4.7 113 63-205 1-113 (198)
480 PRK09825 idnK D-gluconate kina 98.4 2.7E-07 5.9E-12 89.0 3.6 67 60-132 2-70 (176)
481 TIGR00416 sms DNA repair prote 98.3 1.8E-06 3.9E-11 95.2 8.7 63 189-251 169-247 (454)
482 cd01122 GP4d_helicase GP4d_hel 98.3 4.5E-06 9.7E-11 85.8 11.1 163 49-233 18-191 (271)
483 COG1682 TagG ABC-type polysacc 98.3 0.00053 1.1E-08 70.3 26.1 209 329-547 15-227 (263)
484 PRK01889 GTPase RsgA; Reviewed 98.3 7.8E-07 1.7E-11 95.2 5.2 107 51-163 185-291 (356)
485 TIGR03518 ABC_perm_GldF glidin 98.3 0.00063 1.4E-08 68.9 26.1 222 335-604 2-240 (240)
486 TIGR02680 conserved hypothetic 98.3 1.1E-06 2.4E-11 108.6 7.2 60 170-233 1245-1316(1353)
487 PLN03210 Resistant to P. syrin 98.3 2.5E-06 5.3E-11 104.8 9.6 164 53-270 199-365 (1153)
488 PF12679 ABC2_membrane_2: ABC- 98.2 0.00037 7.9E-09 71.4 24.2 164 413-604 89-275 (277)
489 PRK13898 type IV secretion sys 98.2 3.1E-05 6.6E-10 91.7 18.3 48 187-235 639-687 (800)
490 PF06422 PDR_CDR: CDR ABC tran 98.2 1.9E-06 4.2E-11 75.5 5.5 58 550-607 16-76 (103)
491 cd01121 Sms Sms (bacterial rad 98.2 5.1E-06 1.1E-10 89.3 10.0 62 189-250 157-234 (372)
492 PRK13873 conjugal transfer ATP 98.2 3.3E-05 7.1E-10 91.6 16.3 46 188-234 633-679 (811)
493 PF13555 AAA_29: P-loop contai 98.2 2.6E-06 5.6E-11 67.2 4.5 37 51-87 12-49 (62)
494 PF13558 SbcCD_C: Putative exo 98.1 5.7E-06 1.2E-10 70.7 6.5 47 171-217 31-90 (90)
495 PRK15176 Vi polysaccharide exp 98.1 0.0012 2.7E-08 67.8 24.7 108 473-609 157-264 (264)
496 PRK06315 type III secretion sy 98.1 6.5E-06 1.4E-10 89.7 7.9 107 49-158 153-277 (442)
497 PF00488 MutS_V: MutS domain V 98.1 8.8E-05 1.9E-09 74.9 15.4 53 188-242 120-173 (235)
498 TIGR02903 spore_lon_C ATP-depe 98.1 9E-06 2E-10 93.1 9.2 112 60-217 174-291 (615)
499 PRK09270 nucleoside triphospha 98.1 4.2E-06 9.1E-11 84.1 5.7 74 59-136 31-108 (229)
500 PRK10078 ribose 1,5-bisphospho 98.1 4.3E-06 9.3E-11 81.2 5.1 37 61-102 2-38 (186)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.2e-111 Score=946.58 Aligned_cols=580 Identities=39% Similarity=0.670 Sum_probs=514.7
Q ss_pred CCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-Cce
Q 044112 13 RKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVS 91 (610)
Q Consensus 13 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~ 91 (610)
....+.++|+|+++..+.+ .+..+ ++|+|||++++|||++|||||||||||||||+|+|+.+.+ ..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~-----------~~~~k-~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~ 87 (613)
T KOG0061|consen 20 YLEPVKLSFRNLTLSSKEK-----------SKKTK-TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLS 87 (613)
T ss_pred ccccceeEEEEEEEEecCC-----------CCccc-eeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcce
Confidence 3456789999999998421 11234 8999999999999999999999999999999999999864 689
Q ss_pred eEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 92 GSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV--GLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 92 G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
|+|++||++.+.+.+++.+|||.|||.++|++||+|+|.|+|++|++. ++++++++|+++++++||++++|+++|+..
T Consensus 88 G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~ 167 (613)
T KOG0061|consen 88 GEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPG 167 (613)
T ss_pred EEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCC
Confidence 999999998888889999999999999999999999999999999987 678889999999999999999999999988
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
.|++||||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++ |+|||+|+|||+.+++++||++++|++
T Consensus 168 ~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~ 246 (613)
T KOG0061|consen 168 IRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSE 246 (613)
T ss_pred CCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcC
Confidence 8999999999999999999999999999999999999999999999999986 999999999999999999999999999
Q ss_pred CeEEEEcChhHHHHHHHHcCCCCCCCCChHHHHHHhhhhccccccc-hhhhhhhhhh--h-hhh-hh----hhhccccCC
Q 044112 250 GTVVHHGSLDLLEHRLRIAGHSIPRQVNVLEFAIEMTVAMVIDSEE-SEIEDRDSAQ--D-NEH-GR----KNLRLVNGE 320 (610)
Q Consensus 250 G~iv~~g~~~~~~~~~~~~g~~~p~~~~~ad~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~-~~----~~~~~~~~~ 320 (610)
|+++|+|+++++.+||++.|++||++.||+||++|+++......+. ...+...... . .+. .+ .+.......
T Consensus 247 G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (613)
T KOG0061|consen 247 GEVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSK 326 (613)
T ss_pred CcEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccccc
Confidence 9999999999999999999999999999999999998743111100 0000000000 0 000 00 000000011
Q ss_pred ccccccCCChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHHHHH
Q 044112 321 ETKTYCSNPPFKEVIILVQRFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQIGFFAFSLTFLLSST 400 (610)
Q Consensus 321 ~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~~g~lff~~~~~~~~~ 400 (610)
..+....++||.|++.|++|.+++.+|||.+...|+++.+.+|+++|++||+++++ ..+++++.|++||.+.++.+.+
T Consensus 327 ~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~--~~~~~~~~g~~~~~~~~~~f~~ 404 (613)
T KOG0061|consen 327 KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND--AKGIQNRLGLFFFILSFMTFLS 404 (613)
T ss_pred ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 11111168999999999999999999999999999999999999999999999888 8888899999999999987776
Q ss_pred Hh-hHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHH
Q 044112 401 TE-GLPIYLEERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSN 479 (610)
Q Consensus 401 ~~-~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~ 479 (610)
+. +++.|+.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|++++..+|++|++++++..++++
T Consensus 405 ~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~ 484 (613)
T KOG0061|consen 405 MFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAE 484 (613)
T ss_pred HHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 55 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccccccccCC
Q 044112 480 SFVACFSALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQALEG 559 (610)
Q Consensus 480 ~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~~~ 559 (610)
++++++|++.||...|+.+++++++++++|+||+++.++||+||+|++|+|+++|++|++++|||.+.. ..|....+.
T Consensus 485 s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~--~~~~~~~~~ 562 (613)
T KOG0061|consen 485 SLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGS--SRCFLSGNL 562 (613)
T ss_pred HHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccc--cccccCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999722 237643224
Q ss_pred ccccchHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 044112 560 TCFLYGDGFLAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRSYRTQ 609 (610)
Q Consensus 560 ~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 609 (610)
.|..+|+++++..++++.+.|.|+.++++++++|++++|++|+++.++++
T Consensus 563 ~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 563 CCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 67889999999999999999999999999999999999999999988764
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=3.5e-106 Score=915.69 Aligned_cols=560 Identities=34% Similarity=0.559 Sum_probs=494.1
Q ss_pred cccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEEECCEeCChhcccceEEEEccCCCCCCC
Q 044112 44 KPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPL 122 (610)
Q Consensus 44 ~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~ 122 (610)
++++ .+|+|+|+++++||++||+|||||||||||++|+|+.+++ ..+|+|.+||++++...+++.+|||+|+|.+++.
T Consensus 35 ~~~~-~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 35 RPRK-HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred cCcc-ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCcc
Confidence 3445 8999999999999999999999999999999999998764 3589999999998766778889999999999999
Q ss_pred CCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCcccccccccCC-CCCccCHHHhhHHHHHHHHHhCCCEEEEeCC
Q 044112 123 LTVKETLMYSARLRLHV--GLNRAKARVSELLKELGLEHVANVRIGGE-SSRGISGGEKRRVSIGVDLVHDPAVLLIDEP 199 (610)
Q Consensus 123 lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSgGerqRv~ia~aL~~~p~llllDEP 199 (610)
+||+|||.|++.++.+. +.++++++++++++.+||.+++|+.+|++ ..++|||||||||+||+||+.+|++++||||
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEP 193 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEP 193 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCC
Confidence 99999999999887654 45566778999999999999999999975 3689999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHHHHHcCCCCCCCCChH
Q 044112 200 TSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLRIAGHSIPRQVNVL 279 (610)
Q Consensus 200 tsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~~~~~g~~~p~~~~~a 279 (610)
|+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+
T Consensus 194 tsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~~~n~a 272 (617)
T TIGR00955 194 TSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPA 272 (617)
T ss_pred CcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCCCCChH
Confidence 999999999999999999986 5999999999998789999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccccchhh--hh-hhhhhhhhh---hhhhh--------ccccC---CccccccCCChHHHHHHHHHHHH
Q 044112 280 EFAIEMTVAMVIDSEESEI--ED-RDSAQDNEH---GRKNL--------RLVNG---EETKTYCSNPPFKEVIILVQRFS 342 (610)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~---~~~~~--------~~~~~---~~~~~~~~~~~~~q~~~l~~R~~ 342 (610)
||++++++.......+... +. .+....++. ..... ..... .....+ ..+++.|+..|++|++
T Consensus 273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~l~~R~~ 351 (617)
T TIGR00955 273 DFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGY-NASWWTQFYALLKRSW 351 (617)
T ss_pred HHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccccccccccccccc-CCCHHHHHHHHHHHHH
Confidence 9999998643322111100 00 000000000 00000 00000 011234 6889999999999999
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHHHHHH-hhHHHHHHHhHHHHHHhcCC
Q 044112 343 SNIRRTKQLFAARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQIGFFAFSLTFLLSSTT-EGLPIYLEERKILMRETSRG 421 (610)
Q Consensus 343 ~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~-~~i~~~~~er~v~~rE~~~~ 421 (610)
+..+|||.++..|+++++++|+++|++||+++.+ +.+++++.|++|++++++++.++ ..++.|+.||++|.||+.+|
T Consensus 352 ~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~--~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~ 429 (617)
T TIGR00955 352 LSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT--QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSG 429 (617)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999988 88999999999999988887764 57899999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 044112 422 AYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVPNFIMGNCLIAG 501 (610)
Q Consensus 422 ~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~ 501 (610)
+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.++++
T Consensus 430 ~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~ 509 (617)
T TIGR00955 430 LYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPP 509 (617)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccccccc-cCCccccchHHHHhhcCCCCCChH
Q 044112 502 IMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQA-LEGTCFLYGDGFLAAQGLKDSQKW 580 (610)
Q Consensus 502 ~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~-~~~~c~~~G~~~L~~~g~~~~~~w 580 (610)
+++++++|+||+++.++||+||+|++|+||++|++|+++.|||++.... +|.+. .++.|+.+|+++|+.+|++.++.|
T Consensus 510 ~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~-~c~~~~~~~~c~~~g~~~l~~~g~~~~~~~ 588 (617)
T TIGR00955 510 FVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNI-ECTSANTTGPCPSSGEVILETLSFRNADLY 588 (617)
T ss_pred HHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccc-cccCcCcCCCCCcChHHHHHhcCCCcccHH
Confidence 9999999999999999999999999999999999999999999987541 37642 224698999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 044112 581 SNIGVMLAFVFGYRFLCFLILCYRSYRTQ 609 (610)
Q Consensus 581 ~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 609 (610)
.|+++|++++++|++++|++|+++.++++
T Consensus 589 ~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 589 LDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999999999999999988764
No 3
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.5e-105 Score=911.42 Aligned_cols=578 Identities=27% Similarity=0.455 Sum_probs=482.7
Q ss_pred CCceeEEEEeEEEEEecccccc-----ccccc--------ccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHH
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEF-----NWFCS--------WKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDI 80 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~-----~~~~~--------~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~ 80 (610)
.+.+.+++.|++|++....... ..+.. .++.+++ .+|+|+|+++++||++||+||||||||||||+
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQER-TILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCC-eeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 3467899999999986442100 01110 0111234 79999999999999999999999999999999
Q ss_pred HHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCc
Q 044112 81 LAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV--GLNRAKARVSELLKELGLE 158 (610)
Q Consensus 81 L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~ 158 (610)
|+|+.+++..+|+|.+||+++.. ..++.+|||+|++.+++.+||+||+.+++.++.+. +.++++++++++++.+||+
T Consensus 114 LaG~~~~~~~sG~I~inG~~~~~-~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~ 192 (659)
T PLN03211 114 LAGRIQGNNFTGTILANNRKPTK-QILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLT 192 (659)
T ss_pred HhCCCCCCceeEEEEECCEECch-hhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh
Confidence 99998764468999999998753 34567999999999999999999999998776543 3455667899999999999
Q ss_pred ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHH
Q 044112 159 HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRIL 238 (610)
Q Consensus 159 ~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~ 238 (610)
+++|+++|+...++||||||||++||++|+.+|++|+|||||+|||+.++.++++.|+++++ +|+|||+++|||+.++.
T Consensus 193 ~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~ 271 (659)
T PLN03211 193 KCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVY 271 (659)
T ss_pred hhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHH
Confidence 99999999988999999999999999999999999999999999999999999999999986 58999999999986689
Q ss_pred HhcceEEEeeCCeEEEEcChhHHHHHHHHcCCCCCCCCChHHHHHHhhhhccccc-----cchh-hhhh--hh----hh-
Q 044112 239 ELFDQILLLSKGTVVHHGSLDLLEHRLRIAGHSIPRQVNVLEFAIEMTVAMVIDS-----EESE-IEDR--DS----AQ- 305 (610)
Q Consensus 239 ~~~D~v~~L~~G~iv~~g~~~~~~~~~~~~g~~~p~~~~~ad~~~~~~~~~~~~~-----~~~~-~~~~--~~----~~- 305 (610)
++||++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++...... +... .+.. .. .+
T Consensus 272 ~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 351 (659)
T PLN03211 272 QMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPK 351 (659)
T ss_pred HhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHH
Confidence 9999999999999999999999999999999999999999999999986532110 0000 0000 00 00
Q ss_pred -hhhhhhh---h-hc----cccCC---ccccccCCChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcC
Q 044112 306 -DNEHGRK---N-LR----LVNGE---ETKTYCSNPPFKEVIILVQRFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNA 373 (610)
Q Consensus 306 -~~~~~~~---~-~~----~~~~~---~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~ 373 (610)
....... . .. ....+ ..+.+..++||+|+.+|++|++++ +||+.+..+|+++++++|+++|++||++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~ 430 (659)
T PLN03211 352 VKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHS 430 (659)
T ss_pred HHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000000 0 00 00000 011122578999999999999998 8999999999999999999999999988
Q ss_pred CCCccccchhHHHHHHHHHHHHHHHH-HHhhHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 044112 374 YNDPRRMKLQTQIGFFAFSLTFLLSS-TTEGLPIYLEERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVY 452 (610)
Q Consensus 374 ~~~~~~~~~~~~~g~lff~~~~~~~~-~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y 452 (610)
+ ..++++|.|++||++++.++. ++.+++.|+.||+||+||+.+|+|++++|++|++++|+|+.++.+++|++|+|
T Consensus 431 ~----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y 506 (659)
T PLN03211 431 D----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTY 506 (659)
T ss_pred C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 4 468999999999998886654 46789999999999999999999999999999999999999999999999999
Q ss_pred hccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcc
Q 044112 453 WLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLF 532 (610)
Q Consensus 453 ~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~ 532 (610)
||+|+++++.+|++|+++++++.++++++|+++|+++||..+|+.+++++++++++|+||+++ +||+||+|++|+||+
T Consensus 507 ~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~ 584 (659)
T PLN03211 507 WMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTT 584 (659)
T ss_pred EcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHH
Confidence 999999999999999999999999999999999999999999999999999999999999997 799999999999999
Q ss_pred hHHHHHHHHHHhCCCCC---cccccccc---CCccccchHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044112 533 KYPFECFMINEYGGEKG---KQRCLQAL---EGTCFLYGDGFLAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRSY 606 (610)
Q Consensus 533 ~Y~~e~l~~nef~~~~~---~~~C~~~~---~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~~ 606 (610)
+|+|||++.|||++... ...|.+.. .+.|...++.++ ++.+.|.|+++|++++++|++++|++|+++++
T Consensus 585 ~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 585 FYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEEDVA-----GQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999987532 12475421 134654444444 45579999999999999999999999987654
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2e-102 Score=946.52 Aligned_cols=586 Identities=21% Similarity=0.365 Sum_probs=500.3
Q ss_pred CCceeEEEEeEEEEEecccccc-cc-----------cc----cccccccccccccceeEEEeCceEEEEECCCCCcHHHH
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEF-NW-----------FC----SWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTL 77 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~-~~-----------~~----~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTL 77 (610)
.+.+.+.|+||+++........ .. .. ..++++++ ++|+|+|+.+++||+++|+||||||||||
T Consensus 25 ~~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIlG~nGsGKSTL 103 (1394)
T TIGR00956 25 PYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTF-DILKPMDGLIKPGELTVVLGRPGSGCSTL 103 (1394)
T ss_pred CCeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcc-eeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence 3478899999999884332211 00 00 11222334 79999999999999999999999999999
Q ss_pred HHHHHCCCCC--CCceeEEEECCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC------CHHHHHHH
Q 044112 78 LDILAGMIPL--RRVSGSVLVNEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV------GLNRAKAR 147 (610)
Q Consensus 78 L~~L~g~~~~--~~~~G~I~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~------~~~~~~~~ 147 (610)
||+|+|+.++ .+.+|+|.+||++++. ...++.++||+|+|.+++.+||+||+.|+++++.+. ++++..++
T Consensus 104 Lk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~ 183 (1394)
T TIGR00956 104 LKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKH 183 (1394)
T ss_pred HHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHH
Confidence 9999999742 1359999999998743 345667999999999999999999999998876532 23333333
Q ss_pred -HHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 044112 148 -VSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTI 226 (610)
Q Consensus 148 -v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tv 226 (610)
++++++.+||++++|+++|++.+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+||
T Consensus 184 ~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tv 263 (1394)
T TIGR00956 184 IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTP 263 (1394)
T ss_pred HHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEE
Confidence 5779999999999999999999999999999999999999999999999999999999999999999999987668999
Q ss_pred EEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHHHHHcCCCCCCCCChHHHHHHhhhhccccc----cchhh---h
Q 044112 227 VLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLRIAGHSIPRQVNVLEFAIEMTVAMVIDS----EESEI---E 299 (610)
Q Consensus 227 i~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~~~~~g~~~p~~~~~ad~~~~~~~~~~~~~----~~~~~---~ 299 (610)
|+++|||+.+++++||++++|++|+++++|+++++.+||+++|++||++.|||||++++++...+.. +...+ +
T Consensus 264 ii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~ 343 (1394)
T TIGR00956 264 LVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQ 343 (1394)
T ss_pred EEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHH
Confidence 9999999778999999999999999999999999999999999999999999999999976543211 00000 0
Q ss_pred hh-hhhhhh--------h---hhhh-----------h-hcccc---CCccccccCCChHHHHHHHHHHHHHHhhcCHHHH
Q 044112 300 DR-DSAQDN--------E---HGRK-----------N-LRLVN---GEETKTYCSNPPFKEVIILVQRFSSNIRRTKQLF 352 (610)
Q Consensus 300 ~~-~~~~~~--------~---~~~~-----------~-~~~~~---~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~ 352 (610)
+. +....+ + .... + ..... ....+.+ ..|+|+|+++|++|++++.+|||.++
T Consensus 344 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~Q~~~l~~R~~~~~~Rd~~~~ 422 (1394)
T TIGR00956 344 EFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPY-TVSFSMQVKYCLARNFLRMKGNPSFT 422 (1394)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCC-cCCHHHHHHHHHHHHHHHHhcCHHHH
Confidence 00 000000 0 0000 0 00000 1112234 78999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHhcCCCCChHHHHHHH
Q 044112 353 AARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQIGFFAFSLTFLLSSTTEGLPIYLEERKILMRETSRGAYRISSYVISN 432 (610)
Q Consensus 353 ~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~ 432 (610)
..|+++++++|+++|++||+++.+ ++++++|.|++||++++.+++++..++.++.||+||+||+.+++|++++|++|+
T Consensus 423 ~~r~~~~ii~~li~G~~F~~~~~~--~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~ 500 (1394)
T TIGR00956 423 LFMVFGNIIMALILSSVFYNLPKN--TSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIAS 500 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHH
Confidence 999999999999999999999988 889999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhcc
Q 044112 433 TLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVPNFIMGNCLIAGIMGSYFLFSGY 512 (610)
Q Consensus 433 ~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf 512 (610)
+++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++|+++||..+|+.+++++++++++|+||
T Consensus 501 ~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf 580 (1394)
T TIGR00956 501 IISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGF 580 (1394)
T ss_pred HHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCcccccc---c---------cCCcc----------ccchHHHHh
Q 044112 513 FISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQ---A---------LEGTC----------FLYGDGFLA 570 (610)
Q Consensus 513 ~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~---~---------~~~~c----------~~~G~~~L~ 570 (610)
++|.++||+||+|++|+||++|||||++.|||++...+ |.. . ....| .++|+++|+
T Consensus 581 ~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~--C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~ 658 (1394)
T TIGR00956 581 AIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFE--CSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLK 658 (1394)
T ss_pred ccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccc--ccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHH
Confidence 99999999999999999999999999999999997654 741 0 01134 569999998
Q ss_pred -hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044112 571 -AQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRS 605 (610)
Q Consensus 571 -~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~ 605 (610)
.+|++.+++|+|++||++|+++|++++++++.+.+
T Consensus 659 ~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 659 LSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred hcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 58999999999999999999999999999999876
No 5
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.6e-101 Score=931.72 Aligned_cols=583 Identities=24% Similarity=0.400 Sum_probs=495.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++|+||+|.++.+..... .....+++ .+|+|||+++++||++||+||||||||||||+|+|+.++++.+|+|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~---~~~~~~~~-~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~i 941 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKE---QGVTEDRL-QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRI 941 (1470)
T ss_pred ceEEEEEEEEEEccCccccc---cccCcCCc-eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEE
Confidence 47999999999964322100 00011233 799999999999999999999999999999999999765456899999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV--GLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
||++.+...+++.+|||+|+|.+++.+||+|||.|++.++.+. +.++++++++++++.+||.+++|+++|++.+++||
T Consensus 942 nG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 942 SGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred CCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 9998765556778999999999999999999999998877543 34556678999999999999999999987778999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC-CeEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK-GTVV 253 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv 253 (610)
|||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||+++|||+.++++.||++++|++ |+++
T Consensus 1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v 1100 (1470)
T PLN03140 1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100 (1470)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE
Confidence 9999999999999999999999999999999999999999999986 5899999999999768899999999996 8999
Q ss_pred EEcCh----hHHHHHHHHc-CC-CCCCCCChHHHHHHhhhhccccccch-hhhh----hhhhhhhhhhhhhhccc--cCC
Q 044112 254 HHGSL----DLLEHRLRIA-GH-SIPRQVNVLEFAIEMTVAMVIDSEES-EIED----RDSAQDNEHGRKNLRLV--NGE 320 (610)
Q Consensus 254 ~~g~~----~~~~~~~~~~-g~-~~p~~~~~ad~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~--~~~ 320 (610)
|+|++ +++.+||+++ |+ .||++.|||||++|+++......... ..+. ....+..+. .++.... ..+
T Consensus 1101 ~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~ 1179 (1470)
T PLN03140 1101 YSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKAL-VKELSTPPPGAS 1179 (1470)
T ss_pred EECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHH-HHHhccCCCCcc
Confidence 99996 5789999997 66 49999999999999976432111000 0000 000000000 0111000 011
Q ss_pred ---ccccccCCChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCc-cccchhHHHHHHHHHHHHH
Q 044112 321 ---ETKTYCSNPPFKEVIILVQRFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNAYNDP-RRMKLQTQIGFFAFSLTFL 396 (610)
Q Consensus 321 ---~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~-~~~~~~~~~g~lff~~~~~ 396 (610)
....+ ..++|.|+++|++|+++++||||.++.+|+++++++|+++|++||+++++. +..+++++.|++|+++++.
T Consensus 1180 ~~~~~~~~-~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~ 1258 (1470)
T PLN03140 1180 DLYFATQY-SQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFV 1258 (1470)
T ss_pred ccccCccc-cCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHH
Confidence 12345 789999999999999999999999999999999999999999999999762 2467888999999998888
Q ss_pred HHHHH-hhHHHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHH
Q 044112 397 LSSTT-EGLPIYLEERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVV 475 (610)
Q Consensus 397 ~~~~~-~~i~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~ 475 (610)
.+... ..+|.|..||+||+||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++.+||+|+++++++.
T Consensus 1259 ~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~ 1338 (1470)
T PLN03140 1259 GINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSF 1338 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence 77654 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCcccccc
Q 044112 476 LTSNSFVACFSALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQ 555 (610)
Q Consensus 476 ~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~ 555 (610)
++++++|+++++++||..+|+.+++++++++++|+||++|.++||+||+|++|+||++|+++|++.|||++.+.+..|..
T Consensus 1339 ~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~ 1418 (1470)
T PLN03140 1339 LYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPG 1418 (1470)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999765533332
Q ss_pred ccCCccccchHHHH-hhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 044112 556 ALEGTCFLYGDGFL-AAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRSYRTQ 609 (610)
Q Consensus 556 ~~~~~c~~~G~~~L-~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 609 (610)
. ....++++++ +.|||++++.|++++|+++|+++|++++++++++.+++++
T Consensus 1419 ~---~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1419 G---APDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred C---CCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 1 1113577885 6799999999999999999999999999999999998875
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.9e-101 Score=933.47 Aligned_cols=589 Identities=22% Similarity=0.333 Sum_probs=497.3
Q ss_pred CCCCCceeEEEEeEEEEEeccccccc--c-----------cc---c--ccccccccccccceeEEEeCceEEEEECCCCC
Q 044112 11 TDRKNQYRIRTKKLTYRSFRGVDEFN--W-----------FC---S--WKEKPPAVCILKNVNCEARPGEIMAIVGPSGA 72 (610)
Q Consensus 11 ~~~~~~~~l~~~~ls~~~~~~~~~~~--~-----------~~---~--~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGa 72 (610)
..+.+.+.+.|+||++.......... . .. + .+++.++ .||+|+|+.++|||+++|+|||||
T Consensus 124 ~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~-~IL~~vs~~i~~Ge~~~llGpnGS 202 (1470)
T PLN03140 124 GIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKL-TILKDASGIIKPSRMTLLLGPPSS 202 (1470)
T ss_pred cCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccc-eeccCCeEEEeCCeEEEEEcCCCC
Confidence 33456788999999998863322210 0 00 1 1222334 899999999999999999999999
Q ss_pred cHHHHHHHHHCCCCCC-CceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC---------CHH
Q 044112 73 GKTTLLDILAGMIPLR-RVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV---------GLN 142 (610)
Q Consensus 73 GKSTLL~~L~g~~~~~-~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~---------~~~ 142 (610)
|||||||+|+|+++++ .++|+|.+||++++....++.++||+|+|.+++.+||+|||.|+++++... +.+
T Consensus 203 GKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ 282 (1470)
T PLN03140 203 GKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARR 282 (1470)
T ss_pred CHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHH
Confidence 9999999999998764 468999999998854444678999999999999999999999998775321 111
Q ss_pred HH------------------------HHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeC
Q 044112 143 RA------------------------KARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDE 198 (610)
Q Consensus 143 ~~------------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 198 (610)
++ +..++++++.+||++++|+.||++.+++|||||||||+||++|+.+|++++|||
T Consensus 283 ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDE 362 (1470)
T PLN03140 283 EKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDE 362 (1470)
T ss_pred HHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeC
Confidence 11 123578999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHHHHHcCCCCCCCCCh
Q 044112 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLRIAGHSIPRQVNV 278 (610)
Q Consensus 199 PtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~~~~~g~~~p~~~~~ 278 (610)
||+|||+.++.++++.|++++++.|+|||+++|||+.+++++||+|++|++|+++|+|+++++.+||+++|+.||++.||
T Consensus 363 PTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ 442 (1470)
T PLN03140 363 ISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGT 442 (1470)
T ss_pred CCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCCh
Confidence 99999999999999999999876789999999999878999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccccccc---hhh------hh-hhhhhhhhh---hhhhhc-----c--cc-CCccccccCCChHHHHHHH
Q 044112 279 LEFAIEMTVAMVIDSEE---SEI------ED-RDSAQDNEH---GRKNLR-----L--VN-GEETKTYCSNPPFKEVIIL 337 (610)
Q Consensus 279 ad~~~~~~~~~~~~~~~---~~~------~~-~~~~~~~~~---~~~~~~-----~--~~-~~~~~~~~~~~~~~q~~~l 337 (610)
|||++++++..+.+... ..+ ++ .+..+.+.. ..++.. . .. ....+.+ ..+++.|++.+
T Consensus 443 ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~s~~~q~~~~ 521 (1470)
T PLN03140 443 ADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKY-SVPKMELLKAC 521 (1470)
T ss_pred HHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCC-cCCHHHHHHHH
Confidence 99999998754331110 000 00 000000000 000000 0 00 0112335 78899999999
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHH
Q 044112 338 VQRFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNAYND-PRRMKLQTQIGFFAFSLTFLLSSTTEGLPIYLEERKILMR 416 (610)
Q Consensus 338 ~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~-~~~~~~~~~~g~lff~~~~~~~~~~~~i~~~~~er~v~~r 416 (610)
++|.++..+||+..+..|+++.+++|+++|++||+++.+ ++..+.+.+.|++||++++.+++++..++.++.||+||+|
T Consensus 522 ~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~k 601 (1470)
T PLN03140 522 WDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYK 601 (1470)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH
Confidence 999999999999999999999999999999999999754 1233456778999999999999989999999999999999
Q ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH
Q 044112 417 ETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVPNFIMGN 496 (610)
Q Consensus 417 E~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~ 496 (610)
||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||+|+++++++.++++++++++++++++..+|+
T Consensus 602 er~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~ 681 (1470)
T PLN03140 602 QRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIAN 681 (1470)
T ss_pred hhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCcc-ccccccCCccccchHHHHhhcCCC
Q 044112 497 CLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQ-RCLQALEGTCFLYGDGFLAAQGLK 575 (610)
Q Consensus 497 ~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~-~C~~~~~~~c~~~G~~~L~~~g~~ 575 (610)
.+++++++++++|+||++|.++||+||+|++|+||++||+||++.|||.+..... .|. +.+..+|+++|+.+|++
T Consensus 682 ~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~----~~~~~~G~~~L~~~g~~ 757 (1470)
T PLN03140 682 TGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMAS----DNSTRLGTAVLNIFDVF 757 (1470)
T ss_pred HHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccC----CCCcccHHHHHHhcCcC
Confidence 9999999999999999999999999999999999999999999999998765331 121 23457999999999998
Q ss_pred CCC--hHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044112 576 DSQ--KWSNIGVMLAFVFGYRFLCFLILCYRS 605 (610)
Q Consensus 576 ~~~--~w~~~~il~~~~~~~~~~~~~~l~~~~ 605 (610)
.++ +|+|+++|++|+++|+++++++|++.+
T Consensus 758 ~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 758 TDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 654 588999999999999999999999876
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.7e-99 Score=920.93 Aligned_cols=574 Identities=26% Similarity=0.421 Sum_probs=489.2
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSV 94 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I 94 (610)
..+++|+||+|++.. +++++ .+|+|||+++++||++||+||||||||||||+|+|+.+++ +.+|+|
T Consensus 757 ~~~l~~~nl~~~~~~------------~~~~~-~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I 823 (1394)
T TIGR00956 757 EDIFHWRNLTYEVKI------------KKEKR-VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR 823 (1394)
T ss_pred CceEEEEeeEEEecC------------CCCCc-EeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence 346899999999831 11334 7999999999999999999999999999999999998742 347999
Q ss_pred EECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 95 LVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV--GLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 95 ~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
.+||++++ ..+++.+|||+|+|.+++.+||+|||.|++.++.+. ++++++++++++++.+||.+++|+.+|+. ..+
T Consensus 824 ~i~G~~~~-~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~ 901 (1394)
T TIGR00956 824 LVNGRPLD-SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEG 901 (1394)
T ss_pred EECCEECC-hhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCC
Confidence 99999985 356788999999999999999999999999887643 44556678999999999999999999743 348
Q ss_pred cCHHHhhHHHHHHHHHhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC-
Q 044112 173 ISGGEKRRVSIGVDLVHDPA-VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG- 250 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~-llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G- 250 (610)
|||||||||+||+||+.+|+ +|||||||+|||+.++..+++.|+++++ .|+|||+++|||+..+++.||++++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999985 58999999999997677899999999997
Q ss_pred eEEEEcCh----hHHHHHHHHcCC-CCCCCCChHHHHHHhhhhccccccc-hhhhhhhh----hhhh-hh--hhhhhc-c
Q 044112 251 TVVHHGSL----DLLEHRLRIAGH-SIPRQVNVLEFAIEMTVAMVIDSEE-SEIEDRDS----AQDN-EH--GRKNLR-L 316 (610)
Q Consensus 251 ~iv~~g~~----~~~~~~~~~~g~-~~p~~~~~ad~~~~~~~~~~~~~~~-~~~~~~~~----~~~~-~~--~~~~~~-~ 316 (610)
+++++|++ +++.+||++.|+ +||++.|||||++|+++........ ...+.... .... +. ...... .
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1060 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKA 1060 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccC
Confidence 99999997 568899999996 9999999999999998643221100 00000000 0000 00 000000 0
Q ss_pred cc---CCccccccCCChHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHH
Q 044112 317 VN---GEETKTYCSNPPFKEVIILVQRFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQIGFFAFSL 393 (610)
Q Consensus 317 ~~---~~~~~~~~~~~~~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~~g~lff~~ 393 (610)
.. ....+.+ ++|+|.|+++|++|++++.||||.++.+|+++++++|+++|++||+++++ +.++++|+|++|+.+
T Consensus 1061 ~~~~~~~~~~~~-~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~--~~~i~~~~g~~f~~~ 1137 (1394)
T TIGR00956 1061 EDDNDPDALSKY-AASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS--LQGLQNQMFAVFMAT 1137 (1394)
T ss_pred cccccccccccc-CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHHHHHH
Confidence 00 0111345 78999999999999999999999999999999999999999999999998 899999999999888
Q ss_pred HHHHHHHHhhHHHHHHHhHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHH-------HH
Q 044112 394 TFLLSSTTEGLPIYLEERKIL-MRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDG-------FL 465 (610)
Q Consensus 394 ~~~~~~~~~~i~~~~~er~v~-~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~-------f~ 465 (610)
++..+.....+|.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.. |+
T Consensus 1138 ~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~ 1217 (1394)
T TIGR00956 1138 VLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGV 1217 (1394)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHH
Confidence 877666667789999999886 9999999999999999999999999999999999999999999988765 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhC
Q 044112 466 YFSFVVWLVVLTSNSFVACFSALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYG 545 (610)
Q Consensus 466 ~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~ 545 (610)
+|+++++++.++++++|+++++++|+..+|+.+++++++++++|+||+++.++||.||+|++|+||++|+++|++.|||+
T Consensus 1218 ~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~ 1297 (1394)
T TIGR00956 1218 LFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLA 1297 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc--------------cccccc----------------cCCcc---c-cchHHHHhhcCCCCCChHHHHHHHHHHHH
Q 044112 546 GEKGK--------------QRCLQA----------------LEGTC---F-LYGDGFLAAQGLKDSQKWSNIGVMLAFVF 591 (610)
Q Consensus 546 ~~~~~--------------~~C~~~----------------~~~~c---~-~~G~~~L~~~g~~~~~~w~~~~il~~~~~ 591 (610)
+...+ ++|.++ ..+.| + .+|+++|+.+|++.++.|+|++|+++|++
T Consensus 1298 ~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~ 1377 (1394)
T TIGR00956 1298 DVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIF 1377 (1394)
T ss_pred CCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHH
Confidence 86532 345321 01124 4 59999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccC
Q 044112 592 GYRFLCFLILCYRSYRTQ 609 (610)
Q Consensus 592 ~~~~~~~~~l~~~~~~~~ 609 (610)
++ +++++.|+++.|.+|
T Consensus 1378 ~~-~~~~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1378 FN-IIATVFFYWLARVPK 1394 (1394)
T ss_pred HH-HHHHHhhheEEEcCC
Confidence 99 888888988877654
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-96 Score=843.58 Aligned_cols=497 Identities=30% Similarity=0.481 Sum_probs=443.6
Q ss_pred cccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCH
Q 044112 46 PAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTV 125 (610)
Q Consensus 46 ~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv 125 (610)
+++++|+|||+.++||.++||||+||||||||||+||||...+-++|+|++||.|.+.+.++|.+|||.|+|.|.+.+||
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 34489999999999999999999999999999999999987778899999999999878899999999999999999999
Q ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCC-CEEEEeCCCCC
Q 044112 126 KETLMYSARLRLHV--GLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDP-AVLLIDEPTSG 202 (610)
Q Consensus 126 ~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p-~llllDEPtsg 202 (610)
||.|.|+|.+|++. +.+++.+.|+++++.++|++++|..||.+. +|||.+||||++||.+|+.|| .||||||||||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 99999999999886 566777899999999999999999999777 999999999999999999999 89999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC-CeEEEEcChhH----HHHHHHHcC-CCCCCCC
Q 044112 203 LDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK-GTVVHHGSLDL----LEHRLRIAG-HSIPRQV 276 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~g~~~~----~~~~~~~~g-~~~p~~~ 276 (610)
||+.++..+++.+|++++ .|+||+||+|||+.++++.||++++|++ |++||.|+..+ +.+||++.| .+||...
T Consensus 961 LDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~ 1039 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDE 1039 (1391)
T ss_pred ccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCC
Confidence 999999999999999996 6999999999999999999999999996 79999999865 567999987 7999999
Q ss_pred ChHHHHHHhhhhccccccc---hh--hhhhhhhhhhhhhhhhh-----c-cccCCccccccCCChHHHHHHHHHHHHHHh
Q 044112 277 NVLEFAIEMTVAMVIDSEE---SE--IEDRDSAQDNEHGRKNL-----R-LVNGEETKTYCSNPPFKEVIILVQRFSSNI 345 (610)
Q Consensus 277 ~~ad~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~ 345 (610)
|||||++|++......... .. ......++.++. .++. . ......++++ +.|+|.|++.+++|++..+
T Consensus 1040 NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~-v~~l~~~~~~~~~~~~~~~~f-a~s~~~Q~k~~l~Rq~~sy 1117 (1391)
T KOG0065|consen 1040 NPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKEL-VKELSQPPPGFSTDLEFKTRF-AQSLWYQFKLCLWRQFLSY 1117 (1391)
T ss_pred ChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHH-HHHHhcCCccCCccccccccc-chhHHHHHHHHHHHHHHHH
Confidence 9999999998653322111 00 011111111111 1111 1 1111234456 8999999999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHHHHHHh-hHHHHHHHhHHHHHHhcCCCCC
Q 044112 346 RRTKQLFAARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQIGFFAFSLTFLLSSTTE-GLPIYLEERKILMRETSRGAYR 424 (610)
Q Consensus 346 ~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~i~~~~~er~v~~rE~~~~~Y~ 424 (610)
||+|.++.+|++..++.|+++|+.||+++++ ..++|+.+|++|..+++......+ ..+.+..||.+++||+.+|+||
T Consensus 1118 WRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~--~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs 1195 (1391)
T KOG0065|consen 1118 WRSPDYLMARFALTIVAGLFIGFTFWKVGHN--VQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYS 1195 (1391)
T ss_pred hCCcHHHHHHHHHHHHHHHhheeeeeecCCc--HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCccc
Confidence 9999999999999999999999999999988 999999999999888877665555 3455667999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 044112 425 ISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVPNFIMGNCLIAGIMG 504 (610)
Q Consensus 425 ~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~ 504 (610)
+.+|++|++++|+|+.++.+++|.+|.|+++|+..++.+|++|++..++..++.+.+|+++.+++||.++|..+.+.+..
T Consensus 1196 ~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s 1275 (1391)
T KOG0065|consen 1196 WTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFS 1275 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCC
Q 044112 505 SYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEK 548 (610)
Q Consensus 505 ~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~ 548 (610)
++.+|||+++|.+.||.||+|++|+||+.|..++++..++++.+
T Consensus 1276 ~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~ 1319 (1391)
T KOG0065|consen 1276 FWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVE 1319 (1391)
T ss_pred HHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999865
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.1e-92 Score=805.70 Aligned_cols=553 Identities=26% Similarity=0.443 Sum_probs=486.7
Q ss_pred cccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHH
Q 044112 48 VCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 48 ~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
..+|+|+|+.++|||++.++||+||||||||++|+|.++.. ..+|+|.+||++.+...-++.++|++|+|.|+|.|||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 37999999999999999999999999999999999987643 34789999999986533378899999999999999999
Q ss_pred HHHHHHHHhcCCC------CHHHHH-HHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCC
Q 044112 127 ETLMYSARLRLHV------GLNRAK-ARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEP 199 (610)
Q Consensus 127 E~l~~~~~~~~~~------~~~~~~-~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 199 (610)
|+|.|+++++.+. ++.++. +..+.+++.+||++|+||+||++..|++||||||||++|.+++.+|+++++||+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~ 287 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEI 287 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecc
Confidence 9999999998773 222222 267899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHHHHHcCCCCCCCCChH
Q 044112 200 TSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLRIAGHSIPRQVNVL 279 (610)
Q Consensus 200 tsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~~~~~g~~~p~~~~~a 279 (610)
|+|||+.++.++++.||++++..+.|+++++|||+.+++++||+|++|.+|+++|+||.+++.+||+++|+.||++.++|
T Consensus 288 t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~A 367 (1391)
T KOG0065|consen 288 TRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTA 367 (1391)
T ss_pred cccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhccccccchhh---------hh-hhhhhhhh-h--hhhhh-------c-cccCCccccccCCChHHHHHHHH
Q 044112 280 EFAIEMTVAMVIDSEESEI---------ED-RDSAQDNE-H--GRKNL-------R-LVNGEETKTYCSNPPFKEVIILV 338 (610)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~-~--~~~~~-------~-~~~~~~~~~~~~~~~~~q~~~l~ 338 (610)
||+.++++.....+..... ++ .+.....+ . ...+. + .......+.+ ..|.|.|++.++
T Consensus 368 DfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y-~v~~~~qvk~c~ 446 (1391)
T KOG0065|consen 368 DFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKY-SVPYWEQVKACT 446 (1391)
T ss_pred HHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCce-eccHHHHHHHHH
Confidence 9999998732222111000 00 00000000 0 00000 0 0111133445 889999999999
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHH
Q 044112 339 QRFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNAY-NDPRRMKLQTQIGFFAFSLTFLLSSTTEGLPIYLEERKILMRE 417 (610)
Q Consensus 339 ~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~-~~~~~~~~~~~~g~lff~~~~~~~~~~~~i~~~~~er~v~~rE 417 (610)
+|.+..+.||..++..++++.+++|+++|++|++.. .+ ..+.+.|.|++||++++.++.++..++...+.||||+||
T Consensus 447 ~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t--~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Kh 524 (1391)
T KOG0065|consen 447 IREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMST--TSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKH 524 (1391)
T ss_pred HHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcc--cccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHh
Confidence 999999999999999999999999999999999998 44 778999999999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 044112 418 TSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVPNFIMGNC 497 (610)
Q Consensus 418 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~ 497 (610)
|...+|+|++|.++.++.++|+.++.+++|.+|+||++|+.+++++||.|+++++++..|+.++++++++++++...|++
T Consensus 525 r~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~ 604 (1391)
T KOG0065|consen 525 RDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANL 604 (1391)
T ss_pred hcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCcccccccc---------CCccc------
Q 044112 498 LIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQAL---------EGTCF------ 562 (610)
Q Consensus 498 ~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~---------~~~c~------ 562 (610)
++++.++.+.+++||+||.++||+||+|++|+||+.||+|+++.|||++.+.+ |.+.. ...|.
T Consensus 605 ~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~--c~p~gp~y~n~~~~~~~c~~~~~~~ 682 (1391)
T KOG0065|consen 605 IGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWP--CSPSGPAYDNISIENKVCAATGATL 682 (1391)
T ss_pred HhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCC--CCCCCCcccccccccccchhhcccc
Confidence 99999999999999999999999999999999999999999999999998866 76211 01342
Q ss_pred ----cchHHHHh-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044112 563 ----LYGDGFLA-AQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRS 605 (610)
Q Consensus 563 ----~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~ 605 (610)
+.|+++++ .|++++.++|+|+||++||.++|.++..+++.|.+
T Consensus 683 G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 683 GNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred CceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 35666764 47788999999999999999999999999988875
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-55 Score=418.62 Aligned_cols=218 Identities=33% Similarity=0.537 Sum_probs=201.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.. .+|+|||+++++||+++|+||||||||||||||.++.+++ +|+|.++
T Consensus 2 mi~i~~l~K~f----------------g~~-~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~--~G~I~i~ 62 (240)
T COG1126 2 MIEIKNLSKSF----------------GDK-EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD--SGSITVD 62 (240)
T ss_pred eEEEEeeeEEe----------------CCe-EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC--CceEEEC
Confidence 68999999999 556 8999999999999999999999999999999999999987 9999999
Q ss_pred CEeCC----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMN----ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~----~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++. ....|+.+|+|+|+.+|||++||.||+.++...-.+.++++.++++.++|+++||.+.+|.+. .+|
T Consensus 63 g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qL 137 (240)
T COG1126 63 GEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----AQL 137 (240)
T ss_pred CEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----ccc
Confidence 98763 246788999999999999999999999998765445578888999999999999999998765 799
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
||||||||+|||||+.+|+++++|||||+|||....++.+.++++|+ .|.|.|++||++.. +-+.+|||+.|++|+++
T Consensus 138 SGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM~F-Ar~VadrviFmd~G~ii 215 (240)
T COG1126 138 SGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEMGF-AREVADRVIFMDQGKII 215 (240)
T ss_pred CcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechhHH-HHHhhheEEEeeCCEEE
Confidence 99999999999999999999999999999999999999999999996 59999999999997 78999999999999999
Q ss_pred EEcChhHH
Q 044112 254 HHGSLDLL 261 (610)
Q Consensus 254 ~~g~~~~~ 261 (610)
.+|+++++
T Consensus 216 e~g~p~~~ 223 (240)
T COG1126 216 EEGPPEEF 223 (240)
T ss_pred EecCHHHH
Confidence 99998864
No 11
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4e-52 Score=415.98 Aligned_cols=220 Identities=32% Similarity=0.504 Sum_probs=200.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.| +++ .+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++
T Consensus 2 ~L~~~~ls~~y----------------~~~-~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~--~G~V~l~ 62 (258)
T COG1120 2 MLEVENLSFGY----------------GGK-PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK--SGEVLLD 62 (258)
T ss_pred eeEEEEEEEEE----------------CCe-eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEEC
Confidence 58999999999 455 8999999999999999999999999999999999999987 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV---GLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. +++.+.++||||+....+.+||+|.+.++..-+... ..+++++.++++|+.+|+.+.+++.+ .
T Consensus 63 g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~ 137 (258)
T COG1120 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----D 137 (258)
T ss_pred CCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----c
Confidence 998753 678889999999998888999999999986543222 23455668999999999999999988 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||.|||||+++|++|+||||||.||...+.+++++++++++++|+|||+++||++. ..++||++++|++|+
T Consensus 138 ~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~ 216 (258)
T COG1120 138 ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGK 216 (258)
T ss_pred ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999998889999999999996 789999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
++++|+|+++.
T Consensus 217 i~a~G~p~evl 227 (258)
T COG1120 217 IVAQGTPEEVL 227 (258)
T ss_pred EEeecCcchhc
Confidence 99999998754
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-52 Score=413.90 Aligned_cols=223 Identities=33% Similarity=0.455 Sum_probs=203.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.|.. + .+....+|+|||++|++||++||+|+||||||||+|+|.++..|+ +|+|.++
T Consensus 1 mI~l~~vsK~~~~-----------~-~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt--sG~v~v~ 66 (339)
T COG1135 1 MIELENVSKTFGQ-----------T-GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT--SGSVFVD 66 (339)
T ss_pred CeEEEeeeeeecc-----------C-CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC--CceEEEc
Confidence 5889999999842 1 122237999999999999999999999999999999999999987 9999999
Q ss_pred CEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. ...|+.||+++|+.+|+...||+||++|+.++.. .++++.++||.++|+.+||++.++.+. .
T Consensus 67 G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag-~~k~ei~~RV~elLelVgL~dk~~~yP-----~ 140 (339)
T COG1135 67 GQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG-VPKAEIKQRVAELLELVGLSDKADRYP-----A 140 (339)
T ss_pred CEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC-CCHHHHHHHHHHHHHHcCChhhhccCc-----h
Confidence 988742 4578899999999999999999999999988753 568889999999999999999888765 7
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||+|||||+.+|+||++|||||+|||.+...|+++|+++.++.|.||+++||+++- +.++||||.+|++|+
T Consensus 141 qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~G~ 219 (339)
T COG1135 141 QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQGR 219 (339)
T ss_pred hcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999985 889999999999999
Q ss_pred EEEEcChhHH
Q 044112 252 VVHHGSLDLL 261 (610)
Q Consensus 252 iv~~g~~~~~ 261 (610)
++..|+..++
T Consensus 220 lvE~G~v~~v 229 (339)
T COG1135 220 LVEEGTVSEV 229 (339)
T ss_pred EEEeccHHHh
Confidence 9999998775
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-51 Score=425.17 Aligned_cols=224 Identities=41% Similarity=0.636 Sum_probs=203.8
Q ss_pred eEEEEeEEEEEecccccccccccccccc-cccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKP-PAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.++++||++.| + .+ .+|+||||++++||++|++||||||||||+|+|+|+.+|+ +|+|.+
T Consensus 4 ~i~~~~l~k~~----------------~~~~-~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~--~G~i~i 64 (293)
T COG1131 4 VIEVRNLTKKY----------------GGDK-TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT--SGEILV 64 (293)
T ss_pred eeeecceEEEe----------------CCCC-EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEE
Confidence 57889999999 4 45 8999999999999999999999999999999999999986 999999
Q ss_pred CCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 97 NEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 97 ~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
+|.+... .+.++++||++|++.+++.+||+|||.|.+.++.... +..+++++++++.+||.+.+++++ ++||
T Consensus 65 ~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS 138 (293)
T COG1131 65 LGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK-EEAEERIEELLELFGLEDKANKKV-----RTLS 138 (293)
T ss_pred cCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHcCCchhhCcch-----hhcC
Confidence 9998754 5678889999999999999999999999999875432 456778999999999998666666 6999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
+|||||++||+||+.+|+++||||||+||||.++.++.++|++++++.|+||++|||+++ ++.++||+|++|++|++++
T Consensus 139 ~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~ 217 (293)
T COG1131 139 GGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIA 217 (293)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999999765589999999998 6899999999999999999
Q ss_pred EcChhHHHHHHHH
Q 044112 255 HGSLDLLEHRLRI 267 (610)
Q Consensus 255 ~g~~~~~~~~~~~ 267 (610)
.|+++++...+..
T Consensus 218 ~g~~~~l~~~~~~ 230 (293)
T COG1131 218 EGTPEELKEKFGG 230 (293)
T ss_pred eCCHHHHHHhhcc
Confidence 9999887666543
No 14
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.6e-51 Score=396.56 Aligned_cols=222 Identities=29% Similarity=0.475 Sum_probs=204.9
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|++++|++++ +.+ +|++|||++|++||+++|+||||+|||||||+|.|+++|+ +|+|.
T Consensus 6 ~~~I~vr~v~~~f----------------G~~-~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~--~GeI~ 66 (263)
T COG1127 6 EPLIEVRGVTKSF----------------GDR-VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD--KGEIL 66 (263)
T ss_pred cceEEEeeeeeec----------------CCE-EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC--CCeEE
Confidence 5679999999998 667 8999999999999999999999999999999999999987 99999
Q ss_pred ECCEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 044112 96 VNEQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-ANVRIGGE 168 (610)
Q Consensus 96 ~~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~ 168 (610)
++|+++.. .+.++++|+++|+..||..|||+||+.|..+-+...+++..++.+..-|+.+||... ++.
T Consensus 67 i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~----- 141 (263)
T COG1127 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADL----- 141 (263)
T ss_pred EcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhh-----
Confidence 99998742 256788999999999999999999999988765555778888889999999999876 554
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+|.+||||||||+++|||++.||+++|+||||+||||.++..+-++|+++.+..|.|++++|||.+ +++..+|++++|.
T Consensus 142 ~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~ 220 (263)
T COG1127 142 YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLA 220 (263)
T ss_pred CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEe
Confidence 468999999999999999999999999999999999999999999999999999999999999998 5999999999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|+++++|+++++.
T Consensus 221 ~gkv~~~Gt~~el~ 234 (263)
T COG1127 221 DGKVIAEGTPEELL 234 (263)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999999875
No 15
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-51 Score=399.82 Aligned_cols=219 Identities=32% Similarity=0.511 Sum_probs=203.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+|+.| +.+ .+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+|
T Consensus 1 MI~~~nvsk~y----------------~~~-~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept--~G~I~i~ 61 (309)
T COG1125 1 MIEFENVSKRY----------------GNK-KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT--SGEILID 61 (309)
T ss_pred Cceeeeeehhc----------------CCc-eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC--CceEEEC
Confidence 58999999999 445 7999999999999999999999999999999999999987 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH--VANVRIGGESSRG 172 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~ 172 (610)
|+++.. .++|+.||||-|+..|||++||.||+.+-..+. +.++++.+++++++|+.+||++ +++++ |++
T Consensus 62 g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~-~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~e 135 (309)
T COG1125 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL-GWDKERIKKRADELLDLVGLDPSEYADRY-----PHE 135 (309)
T ss_pred CeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc-CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chh
Confidence 999854 568999999999999999999999999988763 5577888999999999999974 56654 589
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|||||+|||.+||||+.+|+++++|||+++|||.++.++.+.++++.++.|+|||++|||.+ |.++++||+.+|++|++
T Consensus 136 LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i 214 (309)
T COG1125 136 LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEI 214 (309)
T ss_pred cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999998 68999999999999999
Q ss_pred EEEcChhHHH
Q 044112 253 VHHGSLDLLE 262 (610)
Q Consensus 253 v~~g~~~~~~ 262 (610)
+..++|+++.
T Consensus 215 ~Q~~~P~~il 224 (309)
T COG1125 215 VQYDTPDEIL 224 (309)
T ss_pred EEeCCHHHHH
Confidence 9999999875
No 16
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-51 Score=395.70 Aligned_cols=225 Identities=33% Similarity=0.472 Sum_probs=202.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||++.|+ +++ ++|+|||++|++||++||+||||||||||||+|+|+.+++ +|+|.+
T Consensus 2 ~~i~~~nl~k~yp---------------~~~-~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t--~G~i~~ 63 (258)
T COG3638 2 MMIEVKNLSKTYP---------------GGH-QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT--SGEILF 63 (258)
T ss_pred ceEEEeeeeeecC---------------CCc-eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC--cceEEe
Confidence 5799999999994 444 8999999999999999999999999999999999998876 999999
Q ss_pred CCEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHHcCCcccccc
Q 044112 97 NEQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH-------VGLNRAKARVSELLKELGLEHVANV 163 (610)
Q Consensus 97 ~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~ 163 (610)
||.++.. +++|+++||++|++.|.+.+||.||+..+..-+.+ ...++.+.++-+.|+++|+.+.+.+
T Consensus 64 ~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q 143 (258)
T COG3638 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ 143 (258)
T ss_pred cccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH
Confidence 9987642 45778999999999999999999999988543322 2335566788899999999999988
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
+.+ .|||||+|||+|||||+++|++++.|||+++|||.+++++|+.|++++++.|.|||++.||.+. +.++|||
T Consensus 144 ra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~R 217 (258)
T COG3638 144 RAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADR 217 (258)
T ss_pred Hhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhh
Confidence 874 9999999999999999999999999999999999999999999999999999999999999986 7899999
Q ss_pred EEEeeCCeEEEEcChhHHHHHH
Q 044112 244 ILLLSKGTVVHHGSLDLLEHRL 265 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~~~~~ 265 (610)
++-|++|+++|+|+++++.+..
T Consensus 218 iigl~~G~ivfDg~~~el~~~~ 239 (258)
T COG3638 218 IIGLKAGRIVFDGPASELTDEA 239 (258)
T ss_pred heEecCCcEEEeCChhhhhHHH
Confidence 9999999999999998876544
No 17
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.4e-50 Score=394.65 Aligned_cols=211 Identities=37% Similarity=0.559 Sum_probs=185.3
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
++++||++.|..+ +....+|+++|++|++||+++|+|||||||||||++|+|+.+|+ +|+|.++|
T Consensus 2 i~~~~v~k~y~~~-------------~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt--~G~v~i~g 66 (226)
T COG1136 2 IELKNVSKIYGLG-------------GEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT--SGEVLING 66 (226)
T ss_pred cEEeeeEEEeccC-------------CcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEECC
Confidence 6789999998421 11137999999999999999999999999999999999999886 99999999
Q ss_pred EeCCh------hcc-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCC
Q 044112 99 QPMNI------TQF-RRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN-VRIGGESS 170 (610)
Q Consensus 99 ~~~~~------~~~-~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~vg~~~~ 170 (610)
++++. ..+ ++.+|||+|+..|+|.+||+||+++++.+... +..+.+++++++++.+||.+..+ +++
T Consensus 67 ~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~-~~~~~~~~~~~l~~~lgl~~~~~~~~p----- 140 (226)
T COG1136 67 KDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK-SAGRRKRAAEELLEVLGLEDRLLKKKP----- 140 (226)
T ss_pred EEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC-ChhHHHHHHHHHHHhcCChhhhccCCc-----
Confidence 88752 223 46799999999999999999999998766432 22256778999999999997666 544
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
.+|||||||||+|||||+.+|+++++||||.+||+.++..+++++++++++.|+|||++|||+. +.+.|||++.|.+|
T Consensus 141 ~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG 218 (226)
T COG1136 141 SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDG 218 (226)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCC
Confidence 7999999999999999999999999999999999999999999999999888999999999985 78999999999999
Q ss_pred eE
Q 044112 251 TV 252 (610)
Q Consensus 251 ~i 252 (610)
++
T Consensus 219 ~~ 220 (226)
T COG1136 219 KI 220 (226)
T ss_pred ee
Confidence 84
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=422.41 Aligned_cols=235 Identities=29% Similarity=0.467 Sum_probs=212.6
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++||+++| +.. .+++|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.
T Consensus 3 ~~~l~i~~v~k~y----------------g~~-~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~--~G~I~ 63 (352)
T COG3842 3 KPALEIRNVSKSF----------------GDF-TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS--SGEIL 63 (352)
T ss_pred CceEEEEeeeeec----------------CCe-eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEE
Confidence 3468999999999 444 8999999999999999999999999999999999999987 99999
Q ss_pred ECCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 96 VNEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 96 ~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
++|++++. ...+|.+|+|+|+..|||+|||+||+.|+.+.+....+++.+++|+++++.++|++.+++++ .+||
T Consensus 64 l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLS 138 (352)
T COG3842 64 LDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----HQLS 138 (352)
T ss_pred ECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhC
Confidence 99999875 45678899999999999999999999999985544455678889999999999999988776 7999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
|||||||+|||||+.+|++|+||||.|+||..-+.++...|+++.++.|.|.|++|||.+ |...++|||.+|++|++..
T Consensus 139 GGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred hHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceee
Confidence 999999999999999999999999999999999999999999999999999999999997 6899999999999999999
Q ss_pred EcChhHHHHHHHHcCCCCCCCCChHHHHH
Q 044112 255 HGSLDLLEHRLRIAGHSIPRQVNVLEFAI 283 (610)
Q Consensus 255 ~g~~~~~~~~~~~~g~~~p~~~~~ad~~~ 283 (610)
.|+|+++. ..|...-.|||+-
T Consensus 218 ~gtP~eiY--------~~P~~~fVA~FiG 238 (352)
T COG3842 218 VGTPEEIY--------ERPATRFVADFIG 238 (352)
T ss_pred cCCHHHHh--------hCcchHHHHHHhC
Confidence 99999874 2355555566654
No 19
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-50 Score=394.12 Aligned_cols=206 Identities=31% Similarity=0.472 Sum_probs=188.6
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++++++++.| +.. .+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.+
T Consensus 2 ~~l~i~~v~~~f----------------~~~-~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~--~G~V~~ 62 (248)
T COG1116 2 ALLEIEGVSKSF----------------GGV-EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT--SGEVLL 62 (248)
T ss_pred ceEEEEeeEEEe----------------Cce-EEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEE
Confidence 358899999999 334 7999999999999999999999999999999999999987 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+|+++. .-...++||+|++.++|.+||+||+.++...+. .++++.+++++++|+.+||.+..|++. ++||||
T Consensus 63 ~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~-~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~qLSGG 134 (248)
T COG1116 63 DGRPVT--GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG-KSKAEARERAKELLELVGLAGFEDKYP-----HQLSGG 134 (248)
T ss_pred CCcccC--CCCCCEEEEeccCcccchhhHHhhheehhhccc-cchHhHHHHHHHHHHHcCCcchhhcCc-----cccChH
Confidence 999883 335678999999999999999999999988753 345666779999999999999988764 799999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
|||||+|||||+.+|++|+||||++.||+.++.++.+.|.++.++.++||+++|||.+ |...++|||++|+++
T Consensus 135 MrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 135 MRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999998 688999999999984
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-49 Score=396.48 Aligned_cols=219 Identities=31% Similarity=0.540 Sum_probs=192.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|+++.| +.+ .+|+|||+++++||+++|+||||||||||+|+|.|+++|. +|+|.+
T Consensus 3 ~~i~v~nl~v~y----------------~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~--~G~i~~ 63 (254)
T COG1121 3 PMIEVENLTVSY----------------GNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS--SGEIKI 63 (254)
T ss_pred cEEEEeeeEEEE----------------CCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC--cceEEE
Confidence 468999999999 434 5999999999999999999999999999999999999887 999999
Q ss_pred CCEeCChhcccceEEEEccCCC---CCCCCCHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 97 NEQPMNITQFRRISGYVTQDEV---LFPLLTVKETLMYSARLRLHV---GLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~---l~~~lTv~E~l~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
+|++.....-+..||||||... -|| +||+|.+..+...+.+. ..+++++.++++|+.+|+.+.+|+.+|
T Consensus 64 ~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~---- 138 (254)
T COG1121 64 FGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG---- 138 (254)
T ss_pred ccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc----
Confidence 9998754444578999999642 344 79999999985433321 234457889999999999999999996
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
+|||||+|||-|||||+++|++|+|||||+|+|+.++..++++|++++++ |+||++++||++. +.++||+|+.|+ +
T Consensus 139 -~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~-v~~~~D~vi~Ln-~ 214 (254)
T COG1121 139 -ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGL-VMAYFDRVICLN-R 214 (254)
T ss_pred -ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHH-hHhhCCEEEEEc-C
Confidence 99999999999999999999999999999999999999999999999876 9999999999984 899999999996 6
Q ss_pred eEEEEcChhHHHH
Q 044112 251 TVVHHGSLDLLEH 263 (610)
Q Consensus 251 ~iv~~g~~~~~~~ 263 (610)
++++.|++++..+
T Consensus 215 ~~~~~G~~~~~~~ 227 (254)
T COG1121 215 HLIASGPPEEVLT 227 (254)
T ss_pred eeEeccChhhccC
Confidence 7889999988653
No 21
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-50 Score=413.48 Aligned_cols=221 Identities=31% Similarity=0.480 Sum_probs=204.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++||++.| +.. .+|+|+|+++++||+++|+||||||||||||+|||+.+|+ +|+|.+
T Consensus 2 ~~i~l~~v~K~y----------------g~~-~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~--~G~I~i 62 (338)
T COG3839 2 AELELKNVRKSF----------------GSF-EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT--SGEILI 62 (338)
T ss_pred cEEEEeeeEEEc----------------CCc-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEE
Confidence 468999999999 433 2899999999999999999999999999999999999987 999999
Q ss_pred CCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 97 NEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 97 ~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+|++++. ...+|.+++|+|+..|||+|||+||+.|+.+.+. .++++.+++|+++.+.|+|++..|++. ++|||
T Consensus 63 ~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~-~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSG 136 (338)
T COG3839 63 DGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG-VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSG 136 (338)
T ss_pred CCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC-CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCCh
Confidence 9999875 4456889999999999999999999999988753 356788899999999999999999876 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
||||||+|||||+.+|+++++|||+|+||+..+..+...|+++.++.|.|+|.+|||.. |+..++||+.+|++|++...
T Consensus 137 GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 137 GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeec
Confidence 99999999999999999999999999999999999999999999888999999999987 68999999999999999999
Q ss_pred cChhHHHH
Q 044112 256 GSLDLLEH 263 (610)
Q Consensus 256 g~~~~~~~ 263 (610)
|+|.++.+
T Consensus 216 g~p~ely~ 223 (338)
T COG3839 216 GTPLELYE 223 (338)
T ss_pred CChHHHhh
Confidence 99998754
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-50 Score=379.43 Aligned_cols=221 Identities=35% Similarity=0.544 Sum_probs=202.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|++.+++++| ++..++++||||+++.||++||+|||||||||+|++|++++.|+ +|+|+++
T Consensus 1 Ml~v~~l~K~y----------------~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~--~G~v~id 62 (245)
T COG4555 1 MLEVTDLTKSY----------------GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD--SGKVTID 62 (245)
T ss_pred Ceeeeehhhhc----------------cCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC--CceEEEe
Confidence 57899999999 33425999999999999999999999999999999999999987 9999999
Q ss_pred CEeCC--hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 98 EQPMN--ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~--~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|.+.. +...|+++|.++.+..++..||++|||.|.+++. ..+..+.+++++++.+.++|.+++|+++| ++|.
T Consensus 63 g~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~-~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~ 136 (245)
T COG4555 63 GVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN-GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFST 136 (245)
T ss_pred ecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhch
Confidence 99874 3567899999998888999999999999999885 33567778999999999999999999996 8999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
|+||||+|||||+++|++++|||||||||..+...+.+.++++. +.|++||.+||.++ |+..+||+|++|++|++++.
T Consensus 137 G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k-~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~ 214 (245)
T COG4555 137 GMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK-NEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLE 214 (245)
T ss_pred hhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh-cCCcEEEEecccHH-HHHHhhheEEEEecCcEEEc
Confidence 99999999999999999999999999999999999999999986 46999999999997 69999999999999999999
Q ss_pred cChhHHHHH
Q 044112 256 GSLDLLEHR 264 (610)
Q Consensus 256 g~~~~~~~~ 264 (610)
|+++++...
T Consensus 215 gs~~~l~~r 223 (245)
T COG4555 215 GSIEALDAR 223 (245)
T ss_pred CCHHHHHHH
Confidence 999887544
No 23
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-49 Score=396.08 Aligned_cols=221 Identities=31% Similarity=0.510 Sum_probs=200.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
++|.++|+++.+ +.. .+++|||++|+.||++|++|||||||||||++|||+..|+ +|.|.+
T Consensus 1 m~i~i~~~~~~~----------------~~~-~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~--~G~I~~ 61 (345)
T COG1118 1 MSIRINNVKKRF----------------GAF-GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRL 61 (345)
T ss_pred Cceeehhhhhhc----------------ccc-cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC--CceEEE
Confidence 357888888887 444 7899999999999999999999999999999999999987 999999
Q ss_pred CCE---eCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 97 NEQ---PMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH-VGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 97 ~g~---~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
||+ +.+. ....|+||||+|+..+|++|||.||+.|+.+.+.. .++.+.+.+++++|+.+.|++.++++. .
T Consensus 62 ~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~ 136 (345)
T COG1118 62 NGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----A 136 (345)
T ss_pred CCEeccchhccchhhcceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----h
Confidence 999 5443 23457899999999999999999999999977632 256678889999999999999888764 7
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||++||||+.+|++|+||||+++||..-+.++-+.|+++.++.|.|++++|||++ |+++++|||++|++|+
T Consensus 137 QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~ 215 (345)
T COG1118 137 QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGR 215 (345)
T ss_pred hcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCe
Confidence 999999999999999999999999999999999999999999999998888999999999998 6999999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
|...|+++++.
T Consensus 216 Ieqvg~p~ev~ 226 (345)
T COG1118 216 IEQVGPPDEVY 226 (345)
T ss_pred eeeeCCHHHHh
Confidence 99999999874
No 24
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.1e-47 Score=401.02 Aligned_cols=220 Identities=31% Similarity=0.463 Sum_probs=198.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++| +.+ .+|+|||+++++||++||+||||||||||+++|+|+++|+ +|+|.+
T Consensus 6 ~~i~i~~l~k~~----------------~~~-~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~--~G~v~i 66 (306)
T PRK13537 6 APIDFRNVEKRY----------------GDK-LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISL 66 (306)
T ss_pred ceEEEEeEEEEE----------------CCe-EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEE
Confidence 369999999999 334 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 97 NEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 97 ~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
+|+++.. ...++.+||++|++.+++.+||+||+.+.+..+ +.+.++.+++++++++.++|.+.+++++ ++||
T Consensus 67 ~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (306)
T PRK13537 67 CGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF-GLSAAAARALVPPLLEFAKLENKADAKV-----GELS 140 (306)
T ss_pred CCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCC
Confidence 9998753 345678999999999999999999999877654 2234445677899999999999888887 5999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l~-e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999974 5899999999998 5899999999999999999
Q ss_pred EcChhHHHH
Q 044112 255 HGSLDLLEH 263 (610)
Q Consensus 255 ~g~~~~~~~ 263 (610)
.|+++++.+
T Consensus 219 ~g~~~~l~~ 227 (306)
T PRK13537 219 EGAPHALIE 227 (306)
T ss_pred ECCHHHHHh
Confidence 999988754
No 25
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-47 Score=386.48 Aligned_cols=218 Identities=33% Similarity=0.520 Sum_probs=191.7
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g 61 (235)
T cd03261 1 IELRGLTKSF----------------GGR-TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD--SGEVLIDG 61 (235)
T ss_pred CeEEEEEEEE----------------CCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 99 QPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 99 ~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
+++.. ..+++.++|++|++.+++.+||+||+.++.......+.++.+++++++++.+||.+..++.+ ++
T Consensus 62 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (235)
T cd03261 62 EDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----AE 136 (235)
T ss_pred EEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 98642 23567899999999999999999999987543222234445667899999999988777776 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|||||||||+||+||+.+|++++|||||+|||+.++..+++.|++++++.|+|||++||+++ ++.++||++++|++|++
T Consensus 137 LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i 215 (235)
T cd03261 137 LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKI 215 (235)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999997655899999999998 48889999999999999
Q ss_pred EEEcChhHH
Q 044112 253 VHHGSLDLL 261 (610)
Q Consensus 253 v~~g~~~~~ 261 (610)
++.|+++++
T Consensus 216 ~~~g~~~~~ 224 (235)
T cd03261 216 VAEGTPEEL 224 (235)
T ss_pred EEecCHHHH
Confidence 999988764
No 26
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2e-48 Score=364.24 Aligned_cols=214 Identities=33% Similarity=0.467 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++.|. +.+ .+|+||||++++||++-|+||||||||||||+|.+..+|+ +|+|.+|
T Consensus 1 mI~f~~V~k~Y~---------------~g~-~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt--~G~i~~~ 62 (223)
T COG2884 1 MIRFENVSKAYP---------------GGR-EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT--RGKILVN 62 (223)
T ss_pred CeeehhhhhhcC---------------CCc-hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC--CceEEEC
Confidence 588999999994 334 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|++++. .-+|++||+|+||..+.+..||+||++|+.+.. +.+.++.+++|.++|+.+||.+.++.. |.
T Consensus 63 ~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~-G~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~ 136 (223)
T COG2884 63 GHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI-GKPPREIRRRVSEVLDLVGLKHKARAL-----PS 136 (223)
T ss_pred CeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc-CCCHHHHHHHHHHHHHHhccchhhhcC-----cc
Confidence 999853 347899999999999999999999999998875 345677889999999999999988765 47
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||+||||++.+|++|+.||||.+|||..+.+|++++.++.+ .|.||++.|||.+. +.++-.|++.|++|+
T Consensus 137 ~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd~~l-v~~~~~rvl~l~~Gr 214 (223)
T COG2884 137 QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHDLEL-VNRMRHRVLALEDGR 214 (223)
T ss_pred ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEeccHHH-HHhccCcEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999974 69999999999874 777888999999999
Q ss_pred EEEEcC
Q 044112 252 VVHHGS 257 (610)
Q Consensus 252 iv~~g~ 257 (610)
++....
T Consensus 215 l~~d~~ 220 (223)
T COG2884 215 LVRDES 220 (223)
T ss_pred EEeccc
Confidence 987654
No 27
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.2e-47 Score=403.03 Aligned_cols=223 Identities=30% Similarity=0.424 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|.. ..+.. .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++
T Consensus 1 mI~~~~lsk~y~~------------~~~~~-~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~--~G~I~i~ 65 (343)
T TIGR02314 1 MIKLSNITKVFHQ------------GTKTI-QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--SGSVIVD 65 (343)
T ss_pred CEEEEEEEEEECC------------CCcce-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEEC
Confidence 4889999999931 01123 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---h---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI---T---QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~---~---~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. . ..++.+||++|+..+++.+||+||+.++.... ..++++.++++.++++.+||.+..|+++ .
T Consensus 66 G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~ 139 (343)
T TIGR02314 66 GQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEIKRKVTELLALVGLGDKHDSYP-----S 139 (343)
T ss_pred CEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCCh-----h
Confidence 998753 1 24678999999999999999999999986543 2244556778999999999999888766 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||+|||||+++|++|+||||||+||+.++..+++.|++++++.|.|||++||+++ .+.++||++++|++|+
T Consensus 140 ~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~ 218 (343)
T TIGR02314 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGE 218 (343)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999998766899999999998 4889999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|+++++.
T Consensus 219 iv~~g~~~~v~ 229 (343)
T TIGR02314 219 LIEQGTVSEIF 229 (343)
T ss_pred EEEEcCHHHHH
Confidence 99999988763
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.3e-47 Score=405.21 Aligned_cols=220 Identities=28% Similarity=0.471 Sum_probs=199.2
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+
T Consensus 3 ~~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~--~G~I~i 63 (353)
T TIGR03265 3 PYLSIDNIRKRF----------------GAF-TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT--AGTIYQ 63 (353)
T ss_pred cEEEEEEEEEEe----------------CCe-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--ceEEEE
Confidence 469999999999 334 6899999999999999999999999999999999999877 999999
Q ss_pred CCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 97 NEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 97 ~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+|+++.. ...++.+|||+|+..+||++||+||+.|+.+.+ +.++++.+++++++++.+||++..++.+ ++|||
T Consensus 64 ~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSg 137 (353)
T TIGR03265 64 GGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSG 137 (353)
T ss_pred CCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCH
Confidence 9998753 234578999999999999999999999987643 2245566778999999999999888776 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.++.|.|+|++|||++ ++.+++|++++|++|+++..
T Consensus 138 Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999998777999999999998 68999999999999999999
Q ss_pred cChhHHH
Q 044112 256 GSLDLLE 262 (610)
Q Consensus 256 g~~~~~~ 262 (610)
|+++++.
T Consensus 217 g~~~~~~ 223 (353)
T TIGR03265 217 GTPQEIY 223 (353)
T ss_pred cCHHHHH
Confidence 9998765
No 29
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-47 Score=405.14 Aligned_cols=220 Identities=26% Similarity=0.448 Sum_probs=197.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|. +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++
T Consensus 3 ~l~i~~l~~~~~---------------~~~-~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~--~G~I~~~ 64 (356)
T PRK11650 3 GLKLQAVRKSYD---------------GKT-QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT--SGEIWIG 64 (356)
T ss_pred EEEEEeEEEEeC---------------CCC-EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEEEEC
Confidence 589999999982 223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.+|||+|++.++|.+||+||+.|+.+.+. .+.++.+++++++++.+||++..++++ ++||||
T Consensus 65 g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~-~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgG 138 (356)
T PRK11650 65 GRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG-MPKAEIEERVAEAARILELEPLLDRKP-----RELSGG 138 (356)
T ss_pred CEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC-CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHH
Confidence 998753 2345789999999999999999999999876432 244556678999999999999888776 699999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.++.|.|+|++|||++ ++.+++|++++|++|+++..|
T Consensus 139 q~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 139 QRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEEC
Confidence 9999999999999999999999999999999999999999998767999999999997 589999999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
+++++.
T Consensus 218 ~~~~~~ 223 (356)
T PRK11650 218 TPVEVY 223 (356)
T ss_pred CHHHHH
Confidence 998864
No 30
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-47 Score=403.14 Aligned_cols=220 Identities=26% Similarity=0.428 Sum_probs=199.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||++.| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+
T Consensus 5 ~~l~~~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~~ 65 (351)
T PRK11432 5 NFVVLKNITKRF----------------GSN-TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT--EGQIFI 65 (351)
T ss_pred cEEEEEeEEEEE----------------CCe-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC--ceEEEE
Confidence 369999999999 334 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 97 NEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 97 ~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+|+++.. ...++.+|||+|+..+||++||+||+.|+.+.+. .++++.+++++++++.+||.+..++++ +.|||
T Consensus 66 ~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~-~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSg 139 (351)
T PRK11432 66 DGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG-VPKEERKQRVKEALELVDLAGFEDRYV-----DQISG 139 (351)
T ss_pred CCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC-CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 9998753 2335789999999999999999999999976532 244566788999999999998888765 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++.|+|+|++|||++ ++.+++|++++|++|+++..
T Consensus 140 Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999998767999999999998 58999999999999999999
Q ss_pred cChhHHH
Q 044112 256 GSLDLLE 262 (610)
Q Consensus 256 g~~~~~~ 262 (610)
|+++++.
T Consensus 219 g~~~~~~ 225 (351)
T PRK11432 219 GSPQELY 225 (351)
T ss_pred cCHHHHH
Confidence 9998764
No 31
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-48 Score=367.54 Aligned_cols=236 Identities=30% Similarity=0.433 Sum_probs=203.0
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---Ccee
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSG 92 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G 92 (610)
...++++||++.| +.+ .+|+|||+.|++++++|+||||||||||||+++..+.... +++|
T Consensus 5 ~~~~~~~~l~~yY----------------g~~-~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G 67 (253)
T COG1117 5 IPAIEVRDLNLYY----------------GDK-HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEG 67 (253)
T ss_pred cceeEecceeEEE----------------Cch-hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEE
Confidence 3468999999999 556 8999999999999999999999999999999999876432 6789
Q ss_pred EEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 044112 93 SVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGG 167 (610)
Q Consensus 93 ~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 167 (610)
+|.++|+++-. .++|+.+|+|+|.++.|| +|++||+.|+.+++.-.+ ++.+++|++.|+.-.|.+--..+. +
T Consensus 68 ~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~-~~ldeiVe~sLk~AaLWdEVKDrL-~ 144 (253)
T COG1117 68 EVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD-KELDEIVESSLKKAALWDEVKDRL-H 144 (253)
T ss_pred EEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch-HHHHHHHHHHHHHhHhHHHhHHHh-h
Confidence 99999998732 468999999999999999 899999999998864334 667889999999999965333233 2
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
..+.+||||||||++|||||+.+|+|||||||||+|||.+..+|-+++.++.+ .-|||++||.+.. ..+..|+..++
T Consensus 145 ~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnmqQ-AaRvSD~taFf 221 (253)
T COG1117 145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNMQQ-AARVSDYTAFF 221 (253)
T ss_pred CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCHHH-HHHHhHhhhhh
Confidence 44578999999999999999999999999999999999999999999999963 5799999999985 88999999999
Q ss_pred eCCeEEEEcChhHHHHHHHHcCCCCCCCCChHHHH
Q 044112 248 SKGTVVHHGSLDLLEHRLRIAGHSIPRQVNVLEFA 282 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~~~~~~g~~~p~~~~~ad~~ 282 (610)
..|+++++|+++++. .-|.+....||+
T Consensus 222 ~~G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 222 YLGELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred cccEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 999999999998752 336555555554
No 32
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-47 Score=372.41 Aligned_cols=223 Identities=32% Similarity=0.491 Sum_probs=195.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||++.|..+ +....+|+|||+++++||.+||+|+||||||||.++|+|+.+|+ +|+|.+
T Consensus 2 ~~l~v~nl~~~y~~~-------------~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~--~G~I~~ 66 (252)
T COG1124 2 TLLSVRNLSIVYGGG-------------KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS--SGSILL 66 (252)
T ss_pred ceEEEeceEEEecCC-------------cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC--CceEEE
Confidence 468999999999421 11125999999999999999999999999999999999999987 999999
Q ss_pred CCEeCChh----cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 044112 97 NEQPMNIT----QFRRISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGES 169 (610)
Q Consensus 97 ~g~~~~~~----~~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 169 (610)
+|++.... .+++.+-+|+||+. +.|..||++.|.-+.+.. + ..+.++++.++++.+||.+ .++++
T Consensus 67 ~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~--~~~~~~~i~~~L~~VgL~~~~l~R~----- 138 (252)
T COG1124 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-G--LSKSQQRIAELLDQVGLPPSFLDRR----- 138 (252)
T ss_pred CCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccC-C--ccHHHHHHHHHHHHcCCCHHHHhcC-----
Confidence 99887543 46788999999984 899999999999887652 1 2233455999999999975 44543
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|.+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.++.++.|.|.|++|||.+. +..+|||+++|++
T Consensus 139 P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~ 217 (252)
T COG1124 139 PHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN 217 (252)
T ss_pred chhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC
Confidence 579999999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred CeEEEEcChhHHHH
Q 044112 250 GTVVHHGSLDLLEH 263 (610)
Q Consensus 250 G~iv~~g~~~~~~~ 263 (610)
|++++.++.+++.+
T Consensus 218 G~ivE~~~~~~l~~ 231 (252)
T COG1124 218 GQIVEIGPTEELLS 231 (252)
T ss_pred CeEEEeechhhhhc
Confidence 99999999988653
No 33
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1e-46 Score=398.38 Aligned_cols=222 Identities=28% Similarity=0.423 Sum_probs=198.6
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++||+++| +.+ .+|+|+||++++||++||+||||||||||+++|+|+++|+ +|+|.
T Consensus 39 ~~~i~i~nl~k~y----------------~~~-~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~--~G~i~ 99 (340)
T PRK13536 39 TVAIDLAGVSKSY----------------GDK-AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKIT 99 (340)
T ss_pred ceeEEEEEEEEEE----------------CCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--ceEEE
Confidence 4579999999999 444 7999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 96 VNEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 96 ~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
++|+++.. ...++.+||++|++.+++.+||+||+.+....+ +.+..+.+++++++++.+||.+..++++ ++|
T Consensus 100 i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~L 173 (340)
T PRK13536 100 VLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADARV-----SDL 173 (340)
T ss_pred ECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhCCCh-----hhC
Confidence 99998753 345678999999999999999999999876553 2233445567889999999999888887 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||+||+++|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++
T Consensus 174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l~-e~~~~~d~i~il~~G~i~ 251 (340)
T PRK13536 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLEAGRKI 251 (340)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999975 5899999999998 589999999999999999
Q ss_pred EEcChhHHHHH
Q 044112 254 HHGSLDLLEHR 264 (610)
Q Consensus 254 ~~g~~~~~~~~ 264 (610)
+.|+++++.+.
T Consensus 252 ~~g~~~~l~~~ 262 (340)
T PRK13536 252 AEGRPHALIDE 262 (340)
T ss_pred EEcCHHHHHhh
Confidence 99999987543
No 34
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-47 Score=379.60 Aligned_cols=223 Identities=31% Similarity=0.492 Sum_probs=199.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+++++|++|+|+ +.. .+|+|+|+++++||.++|+|+||||||||+++|+|+++|. +|+|.+
T Consensus 2 ~~i~~~~l~~~y~---------------~~~-~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~--~G~v~~ 63 (235)
T COG1122 2 RMIEAENLSFRYP---------------GRK-AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT--SGEVLV 63 (235)
T ss_pred ceEEEEEEEEEcC---------------CCc-eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC--CCEEEE
Confidence 3688999999993 224 7999999999999999999999999999999999999987 899999
Q ss_pred CCEeCC----hhcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 97 NEQPMN----ITQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 97 ~g~~~~----~~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
+|.++. ...+++.+|||+|++. .+-.-||.|.++|+..- .+.+.++.+++++++++.+|+.+.+++.+ .
T Consensus 64 ~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n-~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~ 137 (235)
T COG1122 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN-LGLPREEIEERVAEALELVGLEELLDRPP-----F 137 (235)
T ss_pred CCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh-cCCCHHHHHHHHHHHHHHcCchhhccCCc-----c
Confidence 999865 3578899999999973 34445999999999764 34466678899999999999999988765 7
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.++.|+|||++|||.+ .+..++|++++|++|+
T Consensus 138 ~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~ 216 (235)
T COG1122 138 NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGK 216 (235)
T ss_pred ccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999998776899999999998 5899999999999999
Q ss_pred EEEEcChhHHHHH
Q 044112 252 VVHHGSLDLLEHR 264 (610)
Q Consensus 252 iv~~g~~~~~~~~ 264 (610)
++++|+++++.+.
T Consensus 217 i~~~g~p~~i~~~ 229 (235)
T COG1122 217 ILADGDPAEIFND 229 (235)
T ss_pred EeecCCHHHHhhh
Confidence 9999998776543
No 35
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=8.9e-47 Score=401.45 Aligned_cols=219 Identities=28% Similarity=0.447 Sum_probs=197.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCce--eEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVS--GSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~--G~I~ 95 (610)
.|+++||+++| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ + |+|.
T Consensus 5 ~l~~~~l~~~~----------------~~~-~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~~~G~i~ 65 (362)
T TIGR03258 5 GIRIDHLRVAY----------------GAN-TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA--GLTGRIA 65 (362)
T ss_pred EEEEEEEEEEE----------------CCe-EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCCEEEE
Confidence 58899999999 334 6999999999999999999999999999999999999887 8 9999
Q ss_pred ECCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 96 VNEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 96 ~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
++|+++.. ...++.+|||+|+..++|.+||+||+.|+.+.+ +.++++.+++++++++.+||++..++++ ++||
T Consensus 66 ~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LS 139 (362)
T TIGR03258 66 IADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAAAHLP-----AQLS 139 (362)
T ss_pred ECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCC
Confidence 99998753 234577999999999999999999999987643 2344556678999999999999888876 6999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQ-GKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~-g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||+|||||+.+|++|+|||||+|||+..+.++.+.|+++.++. |+|+|++|||++ ++..++|++++|++|+++
T Consensus 140 gGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~ 218 (362)
T TIGR03258 140 GGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLA 218 (362)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998664 799999999998 589999999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
..|+++++.
T Consensus 219 ~~g~~~~~~ 227 (362)
T TIGR03258 219 AHGEPQALY 227 (362)
T ss_pred EEcCHHHHH
Confidence 999998874
No 36
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1e-46 Score=400.34 Aligned_cols=220 Identities=27% Similarity=0.445 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 2 ~L~i~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~i~ 62 (353)
T PRK10851 2 SIEIANIKKSF----------------GRT-QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT--SGHIRFH 62 (353)
T ss_pred EEEEEEEEEEe----------------CCe-EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEC
Confidence 58999999998 334 7999999999999999999999999999999999999877 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL---HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++||+|++.++|.+||+||+.|+.+.+. ..+.++.+++++++++.++|.+..++++ .+|
T Consensus 63 g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 137 (353)
T PRK10851 63 GTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQL 137 (353)
T ss_pred CEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 998753 2345679999999999999999999999865421 1234556678999999999998888776 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|+|++||+++ ++.+++|++++|++|+++
T Consensus 138 SgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~ 216 (353)
T PRK10851 138 SGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIE 216 (353)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999998766899999999998 589999999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
+.|+++++.
T Consensus 217 ~~g~~~~i~ 225 (353)
T PRK10851 217 QAGTPDQVW 225 (353)
T ss_pred EEcCHHHHH
Confidence 999998864
No 37
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2e-48 Score=366.58 Aligned_cols=220 Identities=27% Similarity=0.515 Sum_probs=200.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|..+||.++| +++ ++++|||+++++||+++++|||||||||.+.++.|+.+|+ +|+|.+
T Consensus 3 ~~L~a~~l~K~y----------------~kr-~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d--~G~i~l 63 (243)
T COG1137 3 STLVAENLAKSY----------------KKR-KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD--SGKILL 63 (243)
T ss_pred cEEEehhhhHhh----------------CCe-eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC--CceEEE
Confidence 468899999998 455 7999999999999999999999999999999999999988 999999
Q ss_pred CCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 97 NEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV-GLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
||.+++. ...|..+||+||++..|..|||+||++.....+... ...+.+.+++++|++++|.++++++- .
T Consensus 64 d~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~ 138 (243)
T COG1137 64 DDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKA-----Y 138 (243)
T ss_pred CCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcc-----c
Confidence 9999874 334556999999999999999999999988876533 23455667899999999999999876 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+||||||||+.|||||+.+|+.++||||++|.||.+..+|.++++.++. .|..|++|-|..+ |..++|||.+++++|+
T Consensus 139 sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNVR-EtL~i~dRaYIi~~G~ 216 (243)
T COG1137 139 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNVR-ETLDICDRAYIISDGK 216 (243)
T ss_pred ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccHH-HHHhhhheEEEEecCe
Confidence 9999999999999999999999999999999999999999999999975 6999999999998 6899999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+.++|+++++.
T Consensus 217 vla~G~p~ei~ 227 (243)
T COG1137 217 VLAEGSPEEIV 227 (243)
T ss_pred EEecCCHHHHh
Confidence 99999999875
No 38
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.5e-46 Score=401.15 Aligned_cols=220 Identities=28% Similarity=0.440 Sum_probs=197.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++|+++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+
T Consensus 13 ~~L~l~~l~~~~----------------~~~-~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~--~G~I~~ 73 (375)
T PRK09452 13 PLVELRGISKSF----------------DGK-EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SGRIML 73 (375)
T ss_pred ceEEEEEEEEEE----------------CCe-EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEE
Confidence 358999999999 334 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 97 NEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 97 ~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+|+++.. ...++.+|||+|++.+||.+||+||+.|+.+.+ ..+..+.+++++++++.+||++..++++ .+|||
T Consensus 74 ~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSg 147 (375)
T PRK09452 74 DGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSG 147 (375)
T ss_pred CCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCH
Confidence 9998753 234577999999999999999999999987643 2244555678999999999999888776 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
||||||+|||||+.+|++|+|||||+|||+..+..+.+.|+++.++.|+|+|++|||++ ++..++|++++|++|+++..
T Consensus 148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999998767999999999997 58999999999999999999
Q ss_pred cChhHHH
Q 044112 256 GSLDLLE 262 (610)
Q Consensus 256 g~~~~~~ 262 (610)
|+++++.
T Consensus 227 g~~~~i~ 233 (375)
T PRK09452 227 GTPREIY 233 (375)
T ss_pred cCHHHHH
Confidence 9998764
No 39
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-47 Score=372.38 Aligned_cols=222 Identities=32% Similarity=0.496 Sum_probs=200.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++++||++++ +.- ++++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.+
T Consensus 3 ~lL~v~~l~k~F----------------GGl-~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~--~G~v~~ 63 (250)
T COG0411 3 PLLEVRGLSKRF----------------GGL-TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS--SGTVIF 63 (250)
T ss_pred ceeeeccceeec----------------CCE-EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC--CceEEE
Confidence 468899999998 556 7999999999999999999999999999999999999987 999999
Q ss_pred CCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC--------CC---CHHHHHHHHHHHHHHcCCcccc
Q 044112 97 NEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL--------HV---GLNRAKARVSELLKELGLEHVA 161 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~--------~~---~~~~~~~~v~~~l~~lgL~~~~ 161 (610)
+|++++. +..+..++--+|...+|+.|||.||+..++..+. +. ..++..+++.++|+.+||.+.+
T Consensus 64 ~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a 143 (250)
T COG0411 64 RGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELA 143 (250)
T ss_pred CCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhh
Confidence 9999864 2345668999999999999999999999865331 11 2345667899999999999999
Q ss_pred cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 162 NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 162 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
|++.| +||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|+++.++.|.||+++.||++. ++++|
T Consensus 144 ~~~A~-----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~ 217 (250)
T COG0411 144 DRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLA 217 (250)
T ss_pred cchhh-----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-Hhhhc
Confidence 99985 8999999999999999999999999999999999999999999999987678999999999995 99999
Q ss_pred ceEEEeeCCeEEEEcChhHHHH
Q 044112 242 DQILLLSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 242 D~v~~L~~G~iv~~g~~~~~~~ 263 (610)
|||++|+.|+++++|+|+++.+
T Consensus 218 dri~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 218 DRIVVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred cEEEeccCCcCcccCCHHHHhc
Confidence 9999999999999999998753
No 40
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-46 Score=399.57 Aligned_cols=221 Identities=24% Similarity=0.409 Sum_probs=199.0
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++|+++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.
T Consensus 17 ~~~l~l~~v~~~~----------------~~~-~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~--~G~I~ 77 (377)
T PRK11607 17 TPLLEIRNLTKSF----------------DGQ-HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT--AGQIM 77 (377)
T ss_pred CceEEEEeEEEEE----------------CCE-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEE
Confidence 4469999999998 334 6999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 96 VNEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 96 ~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
++|+++.. ...++.+|||+|++.+||++||+||+.|+.+.+. .+.++.+++++++++.+||.+..++.+ ++||
T Consensus 78 i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LS 151 (377)
T PRK11607 78 LDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK-LPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLS 151 (377)
T ss_pred ECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCC
Confidence 99998753 3356789999999999999999999999876432 244556778999999999998888776 6999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
|||||||+|||||+.+|++|+|||||+|||+..+..+.+.|+++.++.|.|+|++|||++ ++..++|++++|++|+++.
T Consensus 152 gGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~ 230 (377)
T PRK11607 152 GGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQ 230 (377)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999987777899999999998 5899999999999999999
Q ss_pred EcChhHHH
Q 044112 255 HGSLDLLE 262 (610)
Q Consensus 255 ~g~~~~~~ 262 (610)
.|+++++.
T Consensus 231 ~g~~~~~~ 238 (377)
T PRK11607 231 IGEPEEIY 238 (377)
T ss_pred EcCHHHHH
Confidence 99998764
No 41
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-46 Score=371.95 Aligned_cols=212 Identities=35% Similarity=0.551 Sum_probs=185.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g 61 (213)
T cd03259 1 LELKGLSKTY----------------GSV-RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD--SGEILIDG 61 (213)
T ss_pred CeeeeeEEEe----------------CCe-eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECC
Confidence 4689999998 334 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
+++.. ...++.++|++|++.+++.+|++||+.++.... ....++.+++++++++.+||.+..++.+ ..|||||
T Consensus 62 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~ 135 (213)
T cd03259 62 RDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQ 135 (213)
T ss_pred EEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 98743 224567999999999999999999999875432 1223444567889999999998877766 5899999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||++||++|+.+|++++|||||+|||+.++..+++.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 136 ~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 136 QQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999997656899999999997 478999999999999998765
No 42
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-46 Score=372.86 Aligned_cols=216 Identities=32% Similarity=0.459 Sum_probs=190.8
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|
T Consensus 1 i~~~~~~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g 61 (220)
T cd03265 1 IEVENLVKKY----------------GDF-EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT--SGRATVAG 61 (220)
T ss_pred CEEEEEEEEE----------------CCE-EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECC
Confidence 4789999998 334 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 99 QPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 99 ~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
.++.. ...++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+||.+..++++ ..||||
T Consensus 62 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 135 (220)
T cd03265 62 HDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG-VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGG 135 (220)
T ss_pred EecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHH
Confidence 88642 3445679999999999999999999998765432 223345567899999999998888776 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 136 ~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 214 (220)
T cd03265 136 MRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEG 214 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeC
Confidence 9999999999999999999999999999999999999999997655899999999998 588899999999999999998
Q ss_pred ChhH
Q 044112 257 SLDL 260 (610)
Q Consensus 257 ~~~~ 260 (610)
++++
T Consensus 215 ~~~~ 218 (220)
T cd03265 215 TPEE 218 (220)
T ss_pred ChHH
Confidence 8765
No 43
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-46 Score=376.51 Aligned_cols=219 Identities=30% Similarity=0.472 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 2 ~l~~~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 62 (239)
T cd03296 2 SIEVRNVSKRF----------------GDF-VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD--SGTILFG 62 (239)
T ss_pred EEEEEeEEEEE----------------CCE-EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 58999999999 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++|++|++.+++.+||+||+.++...+.. ...++..++++++++.+||.+..++.+ .+|
T Consensus 63 g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 137 (239)
T cd03296 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQL 137 (239)
T ss_pred CEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhC
Confidence 998743 22346799999999999999999999987543211 122334567889999999988777766 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++
T Consensus 138 S~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (239)
T cd03296 138 SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIE 216 (239)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999999999999997655899999999997 478899999999999999
Q ss_pred EEcChhHH
Q 044112 254 HHGSLDLL 261 (610)
Q Consensus 254 ~~g~~~~~ 261 (610)
+.|+++++
T Consensus 217 ~~~~~~~~ 224 (239)
T cd03296 217 QVGTPDEV 224 (239)
T ss_pred EecCHHHH
Confidence 99998765
No 44
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=5.2e-46 Score=388.42 Aligned_cols=220 Identities=30% Similarity=0.446 Sum_probs=194.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.+
T Consensus 3 ~~i~~~~l~~~~----------------~~~-~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~ 63 (303)
T TIGR01288 3 VAIDLVGVSKSY----------------GDK-VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITV 63 (303)
T ss_pred cEEEEEeEEEEe----------------CCe-EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEE
Confidence 469999999999 334 7999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 97 NEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 97 ~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
+|+++.. ...++.+||++|++.+++.+||+||+.+....+ +.+.++.+++++++++.++|.+..++.+ ++||
T Consensus 64 ~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LS 137 (303)
T TIGR01288 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFARLESKADVRV-----ALLS 137 (303)
T ss_pred CCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCC
Confidence 9998742 335678999999999999999999998765443 2233444567889999999998888877 5899
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~ 215 (303)
T TIGR01288 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFME-EAERLCDRLCVLESGRKIA 215 (303)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 5899999999998 5889999999999999999
Q ss_pred EcChhHHHH
Q 044112 255 HGSLDLLEH 263 (610)
Q Consensus 255 ~g~~~~~~~ 263 (610)
.|+++++.+
T Consensus 216 ~g~~~~~~~ 224 (303)
T TIGR01288 216 EGRPHALID 224 (303)
T ss_pred EcCHHHHHh
Confidence 999988653
No 45
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-46 Score=394.90 Aligned_cols=223 Identities=32% Similarity=0.428 Sum_probs=195.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|.. .++.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++
T Consensus 1 mi~i~~l~~~y~~------------~~~~~-~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~--~G~I~~~ 65 (343)
T PRK11153 1 MIELKNISKVFPQ------------GGRTI-HALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT--SGRVLVD 65 (343)
T ss_pred CEEEEeEEEEeCC------------CCCce-EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEEC
Confidence 4789999999931 01124 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---h---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI---T---QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~---~---~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. . ..++.+||++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ +
T Consensus 66 g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 139 (343)
T PRK11153 66 GQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDKADRYP-----A 139 (343)
T ss_pred CEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCCh-----h
Confidence 998752 1 24678999999999999999999999986543 2234455678899999999998888766 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|+
T Consensus 140 ~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~ 218 (343)
T PRK11153 140 QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGR 218 (343)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999998666899999999998 5888999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|+++++.
T Consensus 219 i~~~g~~~~~~ 229 (343)
T PRK11153 219 LVEQGTVSEVF 229 (343)
T ss_pred EEEEcCHHHHH
Confidence 99999988763
No 46
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-46 Score=398.03 Aligned_cols=219 Identities=31% Similarity=0.518 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++
T Consensus 3 ~l~i~~l~~~~----------------~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~--~G~I~~~ 63 (369)
T PRK11000 3 SVTLRNVTKAY----------------GDV-VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT--SGDLFIG 63 (369)
T ss_pred EEEEEEEEEEe----------------CCe-EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEEEC
Confidence 58999999998 334 7999999999999999999999999999999999999877 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.++||+|+..+++.+||+||+.|+...+ ..+.++.+++++++++.+||.+..++.+ .+||||
T Consensus 64 g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgG 137 (369)
T PRK11000 64 EKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGG 137 (369)
T ss_pred CEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHH
Confidence 998753 223567999999999999999999999987543 2234455678999999999998888776 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++.|+|+|++|||++ ++.+++|++++|++|+++..|
T Consensus 138 q~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999999999999997666899999999997 588999999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
+++++.
T Consensus 217 ~~~~i~ 222 (369)
T PRK11000 217 KPLELY 222 (369)
T ss_pred CHHHHH
Confidence 998764
No 47
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.2e-47 Score=351.03 Aligned_cols=216 Identities=27% Similarity=0.431 Sum_probs=192.3
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|..+|++++|. +.==..+..+++||++||+||||||||||||+|||...|. +|+|.+||
T Consensus 2 l~L~~V~~~y~-------------------~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~--~G~i~i~g 60 (231)
T COG3840 2 LALDDVRFSYG-------------------HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILING 60 (231)
T ss_pred ccccceEEeeC-------------------cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC--CceEEEcC
Confidence 56778888882 1223578899999999999999999999999999999887 99999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
++.+. ....|-+++++|+.++|..+||.+|+.++....+.. .++.+++++.++..+||..+.++.. .+|||||
T Consensus 61 ~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~LkL-~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGq 134 (231)
T COG3840 61 VDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKL-NAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQ 134 (231)
T ss_pred eecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccccc-CHHHHHHHHHHHHHhChhhHhhhCc-----cccCchH
Confidence 99764 345677999999999999999999999986533322 3456788999999999999998876 5999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
||||++||+|+++-+|++||||+|.|||.-+.++..++.+++.+.+.|++++||+|+ ++.+++|+++++++|+|.+.|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999999999999999998 5899999999999999999999
Q ss_pred hhHHH
Q 044112 258 LDLLE 262 (610)
Q Consensus 258 ~~~~~ 262 (610)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88754
No 48
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.8e-46 Score=373.75 Aligned_cols=217 Identities=34% Similarity=0.541 Sum_probs=189.5
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 61 (236)
T cd03219 1 LEVRGLTKRF----------------GGL-VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT--SGSVLFDG 61 (236)
T ss_pred CeeeeeEEEE----------------CCE-EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHcCCcccccccc
Q 044112 99 QPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV---------GLNRAKARVSELLKELGLEHVANVRI 165 (610)
Q Consensus 99 ~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~---------~~~~~~~~v~~~l~~lgL~~~~~~~v 165 (610)
+++.. .. .++.++|++|++.+++.+||+||+.+....+... ..++.+++++++++.+||++..++.+
T Consensus 62 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 141 (236)
T cd03219 62 EDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA 141 (236)
T ss_pred EECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh
Confidence 98753 12 2456999999999999999999999876432111 12344567899999999988777766
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|+++
T Consensus 142 -----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~ 214 (236)
T cd03219 142 -----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMD-VVMSLADRVT 214 (236)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEE
Confidence 69999999999999999999999999999999999999999999999975 5899999999998 5789999999
Q ss_pred EeeCCeEEEEcChhHH
Q 044112 246 LLSKGTVVHHGSLDLL 261 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~ 261 (610)
+|++|+++..|+++++
T Consensus 215 ~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 215 VLDQGRVIAEGTPDEV 230 (236)
T ss_pred EEeCCEEEeecCHHHh
Confidence 9999999999988765
No 49
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-46 Score=369.20 Aligned_cols=217 Identities=33% Similarity=0.495 Sum_probs=187.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.|.. ..+.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|. +|+|.++|
T Consensus 1 l~~~~l~~~~~~------------~~~~~-~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 65 (220)
T cd03293 1 LEVRNVSKTYGG------------GGGAV-TALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT--SGEVLVDG 65 (220)
T ss_pred CeEEEEEEEcCC------------CCcce-EEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECC
Confidence 468999999831 00114 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHh
Q 044112 99 QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEK 178 (610)
Q Consensus 99 ~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 178 (610)
+++. ..++.++|++|++.+++.+||+||+.+....+. ...++..++++++++.+||.+..++.+ +.||||||
T Consensus 66 ~~~~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~ 137 (220)
T cd03293 66 EPVT--GPGPDRGYVFQQDALLPWLTVLDNVALGLELQG-VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMR 137 (220)
T ss_pred EECc--cccCcEEEEecccccccCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHH
Confidence 9874 345679999999999999999999998765431 223344567899999999988777766 59999999
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee--CCeEEEEc
Q 044112 179 RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS--KGTVVHHG 256 (610)
Q Consensus 179 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~g 256 (610)
||++||+||+.+|++++|||||+|||+.++..+.+.|+++.++.|+|||++||+++ ++.+++|++++|+ +|+++..+
T Consensus 138 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 138 QRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEE
Confidence 99999999999999999999999999999999999999987656899999999997 4788999999999 79999888
Q ss_pred Chh
Q 044112 257 SLD 259 (610)
Q Consensus 257 ~~~ 259 (610)
+.+
T Consensus 217 ~~~ 219 (220)
T cd03293 217 EVD 219 (220)
T ss_pred Eec
Confidence 754
No 50
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=7.6e-46 Score=367.65 Aligned_cols=212 Identities=28% Similarity=0.504 Sum_probs=186.5
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 1 i~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~v~~~g 61 (213)
T cd03301 1 VELENVTKRF----------------GNV-TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT--SGRIYIGG 61 (213)
T ss_pred CEEEeeEEEE----------------CCe-eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
+++.. ...++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+|+.+..++.+ +.|||||
T Consensus 62 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 135 (213)
T cd03301 62 RDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQ 135 (213)
T ss_pred EECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHH
Confidence 98743 223467999999999999999999999876543 2233445567889999999998888776 5999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||++||++|+.+|++++|||||+|||+.++..+++.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 136 ~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 136 RQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998656899999999997 578899999999999998875
No 51
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.7e-46 Score=373.68 Aligned_cols=220 Identities=35% Similarity=0.494 Sum_probs=189.1
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++||+++|. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 1 l~~~~l~~~~~---------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 62 (241)
T cd03256 1 IEVENLSKTYP---------------NGK-KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT--SGSVLIDG 62 (241)
T ss_pred CEEeeEEEecC---------------Ccc-EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEEECC
Confidence 46899999882 114 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCCcccccccc
Q 044112 99 QPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLR-------LHVGLNRAKARVSELLKELGLEHVANVRI 165 (610)
Q Consensus 99 ~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 165 (610)
+++.. ...++.++|++|++.+++.+||+||+.++.... .....+...++++++++.+||.+..++.+
T Consensus 63 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 142 (241)
T cd03256 63 TDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA 142 (241)
T ss_pred EeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc
Confidence 98742 234667999999999999999999998764211 01111234567889999999988777765
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|+++
T Consensus 143 -----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~ 216 (241)
T cd03256 143 -----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIV 216 (241)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 6999999999999999999999999999999999999999999999997656899999999998 4788999999
Q ss_pred EeeCCeEEEEcChhHHH
Q 044112 246 LLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~~ 262 (610)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 217 GLKDGRIVFDGPPAELT 233 (241)
T ss_pred EEECCEEEeecCHHHhh
Confidence 99999999999988753
No 52
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-46 Score=360.89 Aligned_cols=220 Identities=30% Similarity=0.458 Sum_probs=193.6
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+..| +.. ++|++||+++++||+++|+||||||||||||+|+|+.++. +|+|.+
T Consensus 2 ~mL~v~~l~~~Y----------------G~~-~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~--~G~I~~ 62 (237)
T COG0410 2 PMLEVENLSAGY----------------GKI-QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR--SGRIIF 62 (237)
T ss_pred CceeEEeEeecc----------------cce-eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeeEEE
Confidence 368999999999 555 8999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCC
Q 044112 97 NEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELG-LEHVANVRIGGESSR 171 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~ 171 (610)
+|++++. +..+..++||||...+||.|||+|||..++..+.. ++..+..++++.+.+- |.+.++++.|
T Consensus 63 ~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~--~~~~~~~~e~v~~lFP~Lker~~~~aG----- 135 (237)
T COG0410 63 DGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD--KEAQERDLEEVYELFPRLKERRNQRAG----- 135 (237)
T ss_pred CCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc--cccccccHHHHHHHChhHHHHhcCccc-----
Confidence 9999864 34667899999999999999999999998765421 1112222777777774 6677777765
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.|||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++.|.||+++.+.... ..+++||.++|.+|+
T Consensus 136 ~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~Gr 214 (237)
T COG0410 136 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLENGR 214 (237)
T ss_pred CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeCCE
Confidence 8999999999999999999999999999999999999999999999987778899999999885 789999999999999
Q ss_pred EEEEcChhHHHH
Q 044112 252 VVHHGSLDLLEH 263 (610)
Q Consensus 252 iv~~g~~~~~~~ 263 (610)
++++|+++++.+
T Consensus 215 iv~~G~~~eL~~ 226 (237)
T COG0410 215 IVLSGTAAELLA 226 (237)
T ss_pred EEEecCHHHHhc
Confidence 999999988753
No 53
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.5e-45 Score=378.64 Aligned_cols=220 Identities=25% Similarity=0.431 Sum_probs=192.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+
T Consensus 6 ~~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~ 66 (269)
T PRK11831 6 NLVDMRGVSFTR----------------GNR-CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD--HGEILF 66 (269)
T ss_pred ceEEEeCeEEEE----------------CCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEE
Confidence 469999999998 334 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 97 NEQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 97 ~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
+|+++.. ...++.++|++|+..+++.+||.||+.+........+.++.++++.++++.+||.+..++.+
T Consensus 67 ~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 141 (269)
T PRK11831 67 DGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMP----- 141 (269)
T ss_pred CCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 9998742 12356799999999999999999999986543211233344567888999999998888776
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|
T Consensus 142 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G 220 (269)
T PRK11831 142 SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADK 220 (269)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECC
Confidence 5999999999999999999999999999999999999999999999997655899999999997 488999999999999
Q ss_pred eEEEEcChhHH
Q 044112 251 TVVHHGSLDLL 261 (610)
Q Consensus 251 ~iv~~g~~~~~ 261 (610)
++++.|+++++
T Consensus 221 ~i~~~g~~~~~ 231 (269)
T PRK11831 221 KIVAHGSAQAL 231 (269)
T ss_pred EEEEeCCHHHH
Confidence 99999998765
No 54
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.5e-45 Score=384.55 Aligned_cols=218 Identities=33% Similarity=0.535 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.++++|++++| +.+ .+|+|+||++++||++||+||||||||||||+|+|+++|+ +|+|.++
T Consensus 2 ~l~~~~l~~~~----------------~~~-~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~--~G~i~i~ 62 (301)
T TIGR03522 2 SIRVSSLTKLY----------------GTQ-NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD--SGSVQVC 62 (301)
T ss_pred EEEEEEEEEEE----------------CCE-EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 48899999999 334 7999999999999999999999999999999999999877 9999999
Q ss_pred CEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 98 EQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|+++.. ...++.+||++|++.+++.+||.||+.+.+.++. .+.++..++++++++.+||.+..++++ +.|||
T Consensus 63 g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 136 (301)
T TIGR03522 63 GEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG-MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSK 136 (301)
T ss_pred CEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCH
Confidence 998743 3456789999999999999999999998876542 233445667899999999999888877 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||++++|++|++++.
T Consensus 137 G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-K-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999985 4 699999999998 58999999999999999999
Q ss_pred cChhHHHH
Q 044112 256 GSLDLLEH 263 (610)
Q Consensus 256 g~~~~~~~ 263 (610)
|+++++..
T Consensus 214 g~~~~~~~ 221 (301)
T TIGR03522 214 KKLDELSA 221 (301)
T ss_pred CCHHHHHH
Confidence 99998754
No 55
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=370.98 Aligned_cols=222 Identities=33% Similarity=0.455 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.+.. +.+.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 1 ~i~~~~l~~~~~~------------~~~~~-~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 65 (233)
T cd03258 1 MIELKNVSKVFGD------------TGGKV-TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT--SGSVLVD 65 (233)
T ss_pred CeEEecceEEccC------------CCCce-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEC
Confidence 3789999999831 00112 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. ...++.++|++|++.+++.+|++||+.+....+. ...++..+.++++++.+||.+..++.+ .
T Consensus 66 g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 139 (233)
T cd03258 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG-VPKAEIEERVLELLELVGLEDKADAYP-----A 139 (233)
T ss_pred CEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCChhhhhcCh-----h
Confidence 998742 1235679999999999999999999998765432 233344567899999999998877766 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~ 218 (233)
T cd03258 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGE 218 (233)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999997655899999999997 5788999999999999
Q ss_pred EEEEcChhHH
Q 044112 252 VVHHGSLDLL 261 (610)
Q Consensus 252 iv~~g~~~~~ 261 (610)
+++.|+++++
T Consensus 219 i~~~~~~~~~ 228 (233)
T cd03258 219 VVEEGTVEEV 228 (233)
T ss_pred EEEecCHHHH
Confidence 9999987765
No 56
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.5e-46 Score=371.37 Aligned_cols=216 Identities=30% Similarity=0.449 Sum_probs=185.6
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC-----CCCCceeE
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI-----PLRRVSGS 93 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~-----~~~~~~G~ 93 (610)
|+++||++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+. +|. +|+
T Consensus 1 i~~~~l~~~~----------------~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~--~G~ 61 (227)
T cd03260 1 IELRDLNVYY----------------GDK-HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD--EGE 61 (227)
T ss_pred CEEEEEEEEc----------------CCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC--CeE
Confidence 4689999998 334 6999999999999999999999999999999999998 665 999
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 168 (610)
|.++|+++.. ...++.++|++|++.++ .+||+||+.++...+.....++.+++++++++.+||.+..++.+.
T Consensus 62 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 138 (227)
T cd03260 62 VLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH-- 138 (227)
T ss_pred EEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC--
Confidence 9999998642 23567899999999888 799999999876543211222345678899999999877665530
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ . +|||++||+++ ++.++||++++|+
T Consensus 139 -~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~~-~~~~~~d~i~~l~ 214 (227)
T cd03260 139 -ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNMQ-QAARVADRTAFLL 214 (227)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccHH-HHHHhCCEEEEEe
Confidence 369999999999999999999999999999999999999999999999975 4 89999999998 4788999999999
Q ss_pred CCeEEEEcChhH
Q 044112 249 KGTVVHHGSLDL 260 (610)
Q Consensus 249 ~G~iv~~g~~~~ 260 (610)
+|++++.|++++
T Consensus 215 ~G~i~~~g~~~~ 226 (227)
T cd03260 215 NGRLVEFGPTEQ 226 (227)
T ss_pred CCEEEEecCccc
Confidence 999999998764
No 57
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-45 Score=379.98 Aligned_cols=224 Identities=25% Similarity=0.396 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.|.. .....+ .+|+|||+++++||++||+||||||||||+++|+|+++|. +|+|.++
T Consensus 2 ~l~~~~l~~~y~~-----------~~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~--~G~i~~~ 67 (287)
T PRK13637 2 SIKIENLTHIYME-----------GTPFEK-KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT--SGKIIID 67 (287)
T ss_pred EEEEEEEEEECCC-----------CCcccc-ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ccEEEEC
Confidence 4899999999831 000123 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-----hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCC
Q 044112 98 EQPMNI-----TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE--HVANVRIGGES 169 (610)
Q Consensus 98 g~~~~~-----~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~ 169 (610)
|+++.. ...++.+|||+|++. .+...||+||+.++.... +.+.++..++++++++.+||. +..++.+
T Consensus 68 g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 142 (287)
T PRK13637 68 GVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GLSEEEIENRVKRAMNIVGLDYEDYKDKSP---- 142 (287)
T ss_pred CEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC-CCCHHHHHHHHHHHHHHcCCCchhhccCCc----
Confidence 998753 245678999999963 333579999999876532 234555667899999999997 5666665
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++
T Consensus 143 -~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~ 220 (287)
T PRK13637 143 -FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK 220 (287)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999998656899999999997 47889999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|++++.|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (287)
T PRK13637 221 GKCELQGTPREVF 233 (287)
T ss_pred CEEEEECCHHHHH
Confidence 9999999998864
No 58
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-45 Score=367.58 Aligned_cols=210 Identities=31% Similarity=0.444 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++|.. +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++
T Consensus 1 ~l~~~~l~~~~~~--------------~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 63 (216)
T TIGR00960 1 MIRFEQVSKAYPG--------------GHQ-PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT--RGKIRFN 63 (216)
T ss_pred CeEEEEEEEEecC--------------CCe-eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 4789999999831 123 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. ..+++.++|++|++.+++.+||+||+.++...+. ...++.+++++++++.+||.+..++.+ .
T Consensus 64 g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 137 (216)
T TIGR00960 64 GQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG-VPPRDANERVSAALEKVGLEGKAHALP-----M 137 (216)
T ss_pred CEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhhCCh-----h
Confidence 998742 1245789999999999999999999998765431 223345567899999999998887766 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~~-~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 138 QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDIN-LVETYRHRTLTLSRGR 215 (216)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCc
Confidence 9999999999999999999999999999999999999999999999875 4899999999997 4788999999999997
Q ss_pred E
Q 044112 252 V 252 (610)
Q Consensus 252 i 252 (610)
+
T Consensus 216 i 216 (216)
T TIGR00960 216 L 216 (216)
T ss_pred C
Confidence 4
No 59
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.1e-45 Score=373.98 Aligned_cols=220 Identities=31% Similarity=0.449 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++
T Consensus 1 ~l~~~~l~~~~~---------------~~~-~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 62 (243)
T TIGR02315 1 MLEVENLSKVYP---------------NGK-QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS--SGSILLE 62 (243)
T ss_pred CeEEEeeeeecC---------------CCc-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ccEEEEC
Confidence 378999999881 134 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHcCCccccccc
Q 044112 98 EQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLR-------LHVGLNRAKARVSELLKELGLEHVANVR 164 (610)
Q Consensus 98 g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~-------~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 164 (610)
|+++.. ..+++.++|++|++.+++.+||+||+.++.... .....++.+++++++++.+||.+..++.
T Consensus 63 g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 142 (243)
T TIGR02315 63 GTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR 142 (243)
T ss_pred CEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC
Confidence 998642 124677999999999999999999998753210 0011233456788999999998877776
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.++||++
T Consensus 143 ~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v 216 (243)
T TIGR02315 143 A-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRI 216 (243)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeE
Confidence 5 6999999999999999999999999999999999999999999999997656899999999998 478899999
Q ss_pred EEeeCCeEEEEcChhHH
Q 044112 245 LLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~ 261 (610)
++|++|++++.|+++++
T Consensus 217 ~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 217 VGLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEEECCEEEecCCHHHh
Confidence 99999999999988764
No 60
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.2e-45 Score=369.03 Aligned_cols=216 Identities=28% Similarity=0.539 Sum_probs=189.5
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g 61 (232)
T cd03218 1 LRAENLSKRY----------------GKR-KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD--SGKILLDG 61 (232)
T ss_pred CeEEEEEEEe----------------CCE-EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 99 QPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 99 ~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
+++.. .. .++.++|++|++.+++.+||+||+.+....+. ...++..++++++++.+|+.+..++.+ +.||
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 135 (232)
T cd03218 62 QDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG-LSKKEREEKLEELLEEFHITHLRKSKA-----SSLS 135 (232)
T ss_pred EecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 98642 12 24569999999999999999999998754332 223344567889999999988777766 5999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++.
T Consensus 136 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 136 GGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNVR-ETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999999975 5899999999998 5889999999999999999
Q ss_pred EcChhHH
Q 044112 255 HGSLDLL 261 (610)
Q Consensus 255 ~g~~~~~ 261 (610)
.|+.++.
T Consensus 214 ~~~~~~~ 220 (232)
T cd03218 214 EGTPEEI 220 (232)
T ss_pred EeCHHHh
Confidence 9988765
No 61
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-45 Score=379.16 Aligned_cols=241 Identities=27% Similarity=0.407 Sum_probs=200.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.|.. +....+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 1 mi~~~~v~~~y~~-----------~~~~~~-~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 66 (288)
T PRK13643 1 MIKFEKVNYTYQP-----------NSPFAS-RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT--EGKVTVG 66 (288)
T ss_pred CEEEEEEEEEeCC-----------CCcccc-cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEEEEC
Confidence 4889999999931 011113 5999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccC
Q 044112 98 EQPMNI-------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 167 (610)
|.++.. ...++.+|||+|++ .+++ .||.||+.|+.... ..+.++.++++.++++.+||. +..++.+
T Consensus 67 g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-- 142 (288)
T PRK13643 67 DIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLADEFWEKSP-- 142 (288)
T ss_pred CEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCChhhccCCc--
Confidence 998741 24567899999986 4555 59999999986532 224455667899999999996 4566655
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|
T Consensus 143 ---~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~~-~~~~~~dri~~l 217 (288)
T PRK13643 143 ---FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMD-DVADYADYVYLL 217 (288)
T ss_pred ---ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999999975 5899999999997 478899999999
Q ss_pred eCCeEEEEcChhHHH---HHHHHcCCCCCCCCChHHH
Q 044112 248 SKGTVVHHGSLDLLE---HRLRIAGHSIPRQVNVLEF 281 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~---~~~~~~g~~~p~~~~~ad~ 281 (610)
++|++++.|+++++. +.+...|+.+|.....++.
T Consensus 218 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 254 (288)
T PRK13643 218 EKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQ 254 (288)
T ss_pred ECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHH
Confidence 999999999998864 3455667776654444433
No 62
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.7e-45 Score=370.50 Aligned_cols=218 Identities=30% Similarity=0.493 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 1 ~l~~~~l~~~~----------------~~~-~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 61 (240)
T PRK09493 1 MIEFKNVSKHF----------------GPT-QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT--SGDLIVD 61 (240)
T ss_pred CEEEEeEEEEE----------------CCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 37899999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 98 EQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 98 g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
|+++.. ...++.++|++|++.+++.+||+||+.++.........++.++++.++++.+||++..++.+ +.
T Consensus 62 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 136 (240)
T PRK09493 62 GLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYP-----SE 136 (240)
T ss_pred CEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hh
Confidence 998742 23466799999999999999999999886432112233445567899999999988777766 69
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEIG-FAEKVASRLIFIDKGRI 214 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875 5899999999998 47889999999999999
Q ss_pred EEEcChhHH
Q 044112 253 VHHGSLDLL 261 (610)
Q Consensus 253 v~~g~~~~~ 261 (610)
++.|+++++
T Consensus 215 ~~~g~~~~~ 223 (240)
T PRK09493 215 AEDGDPQVL 223 (240)
T ss_pred EeeCCHHHH
Confidence 999998765
No 63
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.9e-45 Score=372.48 Aligned_cols=218 Identities=32% Similarity=0.500 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++
T Consensus 3 ~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 63 (250)
T PRK11264 3 AIEVKNLVKKF----------------HGQ-TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE--AGTIRVG 63 (250)
T ss_pred cEEEeceEEEE----------------CCe-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEEC
Confidence 58999999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-----------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 044112 98 EQPMNI-----------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG 166 (610)
Q Consensus 98 g~~~~~-----------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 166 (610)
|+++.. ...++.++|++|++.+++.+||+||+.++.........++..++++++++.+||.+..++.+
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~- 142 (250)
T PRK11264 64 DITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYP- 142 (250)
T ss_pred CEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCCh-
Confidence 998642 23456799999999999999999999886432112233445567889999999988777665
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++
T Consensus 143 ----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~~-~~~~~~d~i~~ 216 (250)
T PRK11264 143 ----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMS-FARDVADRAIF 216 (250)
T ss_pred ----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 69999999999999999999999999999999999999999999999975 4899999999997 47889999999
Q ss_pred eeCCeEEEEcChhHH
Q 044112 247 LSKGTVVHHGSLDLL 261 (610)
Q Consensus 247 L~~G~iv~~g~~~~~ 261 (610)
|++|++++.|+++++
T Consensus 217 l~~G~i~~~~~~~~~ 231 (250)
T PRK11264 217 MDQGRIVEQGPAKAL 231 (250)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998765
No 64
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.6e-45 Score=384.50 Aligned_cols=206 Identities=32% Similarity=0.486 Sum_probs=185.5
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh--hcccceEEEEccCCCCCCCCCHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI--TQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
.+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.++|+++.. ...++.+||++|++.+++.+||+
T Consensus 7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT--SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHH
Confidence 7999999999999999999999999999999999999877 9999999998743 34567799999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 044112 127 ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSA 206 (610)
Q Consensus 127 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 206 (610)
||+.+.+..+. .+.++.+++++++++.+||.+..++++ +.|||||||||+||+||+.+|++|+|||||+|||+.
T Consensus 85 e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 158 (302)
T TIGR01188 85 ENLEMMGRLYG-LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPR 158 (302)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHH
Confidence 99998776542 233445667899999999998888877 599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHH
Q 044112 207 SALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHR 264 (610)
Q Consensus 207 ~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~ 264 (610)
++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|++++.|+++++.+.
T Consensus 159 ~~~~l~~~l~~~~~-~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 159 TRRAIWDYIRALKE-EGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999975 4899999999998 58899999999999999999999887543
No 65
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.2e-45 Score=394.57 Aligned_cols=219 Identities=28% Similarity=0.421 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+||++++||+++|+||||||||||||+|+|+++|. +|+|.++
T Consensus 3 ~L~~~nls~~y----------------~~~-~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~--sG~I~l~ 63 (402)
T PRK09536 3 MIDVSDLSVEF----------------GDT-TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVA 63 (402)
T ss_pred eEEEeeEEEEE----------------CCE-EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEEEEC
Confidence 68999999999 345 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLR---LHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. .+.++.+|||+|++.+++.+||+||+.++...+ .....++.+++++++++.+|+.+..++.+ +
T Consensus 64 G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~ 138 (402)
T PRK09536 64 GDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----T 138 (402)
T ss_pred CEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 998743 456778999999999989999999999865321 11112345678999999999999888877 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+||||||||+.|||||+++|++|+|||||+|||+.++.+++++|+++++ .|+|||+++|+++ ++.++||++++|++|+
T Consensus 139 ~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl~-~~~~~adrii~l~~G~ 216 (402)
T PRK09536 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDLD-LAARYCDELVLLADGR 216 (402)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999985 5899999999998 5889999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|+++++.
T Consensus 217 iv~~G~~~ev~ 227 (402)
T PRK09536 217 VRAAGPPADVL 227 (402)
T ss_pred EEEecCHHHHh
Confidence 99999998753
No 66
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=2.4e-45 Score=365.85 Aligned_cols=217 Identities=36% Similarity=0.526 Sum_probs=189.2
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+.. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|
T Consensus 1 l~~~~l~~~~~~--------------~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 63 (220)
T cd03263 1 LQIRNLTKTYKK--------------GTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT--SGTAYING 63 (220)
T ss_pred CEEEeeEEEeCC--------------CCc-eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC
Confidence 468999999820 114 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 99 QPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 99 ~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+++.. ...++.++|++|++.+++.+||+||+.+....+. .+.++.+++++++++.+||.+..++.+ ..||||
T Consensus 64 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 137 (220)
T cd03263 64 YSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG-LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGG 137 (220)
T ss_pred EecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHH
Confidence 98743 3456779999999999999999999998765432 223344567889999999988877776 589999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|+++..|
T Consensus 138 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 214 (220)
T cd03263 138 MKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIG 214 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999864 589999999998 477899999999999999999
Q ss_pred ChhHH
Q 044112 257 SLDLL 261 (610)
Q Consensus 257 ~~~~~ 261 (610)
+++++
T Consensus 215 ~~~~~ 219 (220)
T cd03263 215 SPQEL 219 (220)
T ss_pred CHHHc
Confidence 88753
No 67
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-45 Score=363.64 Aligned_cols=210 Identities=34% Similarity=0.603 Sum_probs=185.2
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+ +++ .+++|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 61 (210)
T cd03269 1 LEVENVTKRF----------------GRV-TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD--SGEVLFDG 61 (210)
T ss_pred CEEEEEEEEE----------------CCE-EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHh
Q 044112 99 QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEK 178 (610)
Q Consensus 99 ~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 178 (610)
+++.. ..++.++|++|++.+++.+||+||+.+....+. ....+.+++++++++.+|+.+..++.+ ++||||||
T Consensus 62 ~~~~~-~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 134 (210)
T cd03269 62 KPLDI-AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG-LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQ 134 (210)
T ss_pred CchhH-HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC-CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHH
Confidence 98753 456689999999999999999999998765432 233445567899999999988777766 59999999
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 179 RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 179 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 135 qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 135 QKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999999875 4899999999997 478899999999999998654
No 68
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-45 Score=370.42 Aligned_cols=218 Identities=31% Similarity=0.514 Sum_probs=190.1
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
++++|+++++. +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|
T Consensus 1 l~~~~l~~~~~---------------~~~-~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 62 (242)
T cd03295 1 IEFENVTKRYG---------------GGK-KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT--SGEIFIDG 62 (242)
T ss_pred CEEEEEEEEeC---------------Ccc-eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECC
Confidence 46899999982 114 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCcc
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH--VANVRIGGESSRGI 173 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~L 173 (610)
+++.. ...++.++|++|++.+++.+||+||+.+....+ ....++..++++++++.+||.+ ..++.+ +.|
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~L 136 (242)
T cd03295 63 EDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL-KWPKEKIRERADELLALVGLDPAEFADRYP-----HEL 136 (242)
T ss_pred eEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhC
Confidence 98642 345667999999999999999999999876543 2233445567899999999985 666655 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++
T Consensus 137 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~ 215 (242)
T cd03295 137 SGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIV 215 (242)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999997655899999999997 478999999999999999
Q ss_pred EEcChhHH
Q 044112 254 HHGSLDLL 261 (610)
Q Consensus 254 ~~g~~~~~ 261 (610)
+.|+++++
T Consensus 216 ~~~~~~~~ 223 (242)
T cd03295 216 QVGTPDEI 223 (242)
T ss_pred EecCHHHH
Confidence 99988765
No 69
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.6e-45 Score=366.69 Aligned_cols=211 Identities=36% Similarity=0.490 Sum_probs=180.7
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++||+++|.. .++.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 1 l~~~~l~~~~~~------------~~~~~-~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~g 65 (218)
T cd03255 1 IELKNLSKTYGG------------GGEKV-QALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT--SGEVRVDG 65 (218)
T ss_pred CeEeeeEEEecC------------CCcce-eEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC--ceeEEECC
Confidence 468999999831 00114 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCChh------c-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 99 QPMNIT------Q-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 99 ~~~~~~------~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
+++... . .++.++|++|++.+++.+||+||+.+....+. ....+.+++++++++.+||.+..++.+ +
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 139 (218)
T cd03255 66 TDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG-VPKKERRERAEELLERVGLGDRLNHYP-----S 139 (218)
T ss_pred EehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC-CCHHHHHHHHHHHHHHcCCchhhhcCh-----h
Confidence 987421 1 34679999999999999999999999765432 223344567899999999988777766 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .||++++|++|+
T Consensus 140 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~ 217 (218)
T cd03255 140 ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGK 217 (218)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCc
Confidence 9999999999999999999999999999999999999999999999976458999999999974 54 999999999997
Q ss_pred E
Q 044112 252 V 252 (610)
Q Consensus 252 i 252 (610)
+
T Consensus 218 i 218 (218)
T cd03255 218 I 218 (218)
T ss_pred C
Confidence 4
No 70
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-45 Score=378.19 Aligned_cols=234 Identities=30% Similarity=0.423 Sum_probs=195.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|.. .++..+ .+|+|||+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 2 ~l~~~~l~~~y~~-----------~~~~~~-~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 67 (290)
T PRK13634 2 DITFQKVEHRYQY-----------KTPFER-RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT--SGTVTIG 67 (290)
T ss_pred EEEEEEEEEEECC-----------CCcccc-cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEEC
Confidence 3889999999931 011123 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccC
Q 044112 98 EQPMNI-------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 167 (610)
|+++.. ...++.+|||+|++ .++ ..||+||+.|+.... ..+.++.+++++++++.+||. +..++.+
T Consensus 68 g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (290)
T PRK13634 68 ERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF-GVSEEDAKQKAREMIELVGLPEELLARSP-- 143 (290)
T ss_pred CEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCChhhhhCCc--
Confidence 998741 24567899999986 455 469999999876432 223445567899999999997 5667665
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ ++.+++||+++|
T Consensus 144 ---~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l 219 (290)
T PRK13634 144 ---FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVM 219 (290)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999998666899999999998 588999999999
Q ss_pred eCCeEEEEcChhHHHH---HHHHcCCCCC
Q 044112 248 SKGTVVHHGSLDLLEH---RLRIAGHSIP 273 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~---~~~~~g~~~p 273 (610)
++|++++.|+++++.+ .+...+...|
T Consensus 220 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 220 HKGTVFLQGTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred ECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 9999999999887642 3334444444
No 71
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.3e-45 Score=388.57 Aligned_cols=205 Identities=28% Similarity=0.418 Sum_probs=186.3
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcc----cceEEEEccCCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQF----RRISGYVTQDEVLFP 121 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~----~~~~~yv~Q~~~l~~ 121 (610)
.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+++.. ..+ ++.++||+|++.++|
T Consensus 7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~--~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT--AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC--ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 6999999999999999999999999999999999999876 9999999998753 223 678999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC
Q 044112 122 LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS 201 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 201 (610)
.+||+||+.++.... +.+.++..+++.++++.+||++..++++ ..|||||||||+|||||+.+|++|||||||+
T Consensus 85 ~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 85 HMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 999999999987653 2345566778999999999998888766 5999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 202 GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 202 gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
|||+.++..+.+.|+++.++.|+|||++|||++ ++.+++|++++|++|+++..|+++++.
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999997666899999999998 588999999999999999999998764
No 72
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=8.7e-45 Score=365.93 Aligned_cols=218 Identities=32% Similarity=0.512 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 1 ~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~ 61 (236)
T TIGR03864 1 ALEVAGLSFAY----------------GAR-RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVA 61 (236)
T ss_pred CEEEEeeEEEE----------------CCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEEC
Confidence 37899999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 98 EQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|.++.. ...++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||.+..++.+ ..|||
T Consensus 62 g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 135 (236)
T TIGR03864 62 GHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH-GLSRAEARERIAALLARLGLAERADDKV-----RELNG 135 (236)
T ss_pred CEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCH
Confidence 998742 223357999999999888999999998876543 2233344567889999999998887776 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|+++..
T Consensus 136 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 136 GHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLAD 213 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999976568999999999984 54 5999999999999999
Q ss_pred cChhHHH
Q 044112 256 GSLDLLE 262 (610)
Q Consensus 256 g~~~~~~ 262 (610)
|+++++.
T Consensus 214 ~~~~~~~ 220 (236)
T TIGR03864 214 GAAAELR 220 (236)
T ss_pred CCHHHHH
Confidence 9887654
No 73
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-45 Score=374.95 Aligned_cols=221 Identities=24% Similarity=0.400 Sum_probs=192.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++|.. .+.+ .+|+|+|+++++||++||+||||||||||+++|+|+++|. +|+|.++
T Consensus 4 ~l~~~~l~~~~~~-------------~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 67 (279)
T PRK13650 4 IIEVKNLTFKYKE-------------DQEK-YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE--SGQIIID 67 (279)
T ss_pred eEEEEeEEEEcCC-------------CCcC-eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEC
Confidence 5899999999831 1123 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++|++|++ ..++..||+||+.++.... ..+.++.+++++++++.+||++..++.+ ..|
T Consensus 68 g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 141 (279)
T PRK13650 68 GDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFKEREP-----ARL 141 (279)
T ss_pred CEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccC
Confidence 998743 34567899999997 4677789999999875432 2244555678899999999998888776 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++.|+|||++||+++. + ..+|++++|++|+++
T Consensus 142 SgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~ 219 (279)
T PRK13650 142 SGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVE 219 (279)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986568999999999974 5 589999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
..|+++++.
T Consensus 220 ~~g~~~~~~ 228 (279)
T PRK13650 220 STSTPRELF 228 (279)
T ss_pred EECCHHHHH
Confidence 999998764
No 74
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-45 Score=365.02 Aligned_cols=218 Identities=33% Similarity=0.475 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++.|.. ....+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 5 ~l~~~~l~~~~~~------------~~~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 69 (233)
T PRK11629 5 LLQCDNLCKRYQE------------GSVQT-DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT--SGDVIFN 69 (233)
T ss_pred eEEEEeEEEEcCC------------CCcce-eeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEEC
Confidence 5899999999831 00113 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---h---cc-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 98 EQPMNI---T---QF-RRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~---~---~~-~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
|+++.. . .. ++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+||.+..++.+
T Consensus 70 g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 143 (233)
T PRK11629 70 GQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG-KKKPAEINSRALEMLAAVGLEHRANHRP----- 143 (233)
T ss_pred CEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCCh-----
Confidence 998743 1 12 257999999999999999999999876532 1223445567899999999988777765
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|
T Consensus 144 ~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G 221 (233)
T PRK11629 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDG 221 (233)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999976568999999999974 554 6899999999
Q ss_pred eEEEEcCh
Q 044112 251 TVVHHGSL 258 (610)
Q Consensus 251 ~iv~~g~~ 258 (610)
+++..++.
T Consensus 222 ~i~~~~~~ 229 (233)
T PRK11629 222 RLTAELSL 229 (233)
T ss_pred EEEEEecc
Confidence 99988763
No 75
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.4e-45 Score=362.82 Aligned_cols=216 Identities=34% Similarity=0.544 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++.. +.+.. .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 1 ~l~~~~v~~~~~~------------~~~~~-~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 65 (218)
T cd03266 1 MITADALTKRFRD------------VKKTV-QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVD 65 (218)
T ss_pred CeEEEEEEEecCC------------CCccc-eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--CceEEEC
Confidence 3789999999831 01112 5999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 98 EQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|+++.. ..+++.++|++|++.+++.+||+||+.+....+. ...++..++++++++.+||.+..++.+ +.|||
T Consensus 66 g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (218)
T cd03266 66 GFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG-LKGDELTARLEELADRLGMEELLDRRV-----GGFST 139 (218)
T ss_pred CEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCH
Confidence 998753 3456789999999999999999999998765431 233445678899999999998888776 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.
T Consensus 140 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 140 GMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeec
Confidence 999999999999999999999999999999999999999999964 5899999999997 58889999999999999865
Q ss_pred c
Q 044112 256 G 256 (610)
Q Consensus 256 g 256 (610)
|
T Consensus 218 ~ 218 (218)
T cd03266 218 G 218 (218)
T ss_pred C
Confidence 4
No 76
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=3.1e-45 Score=362.08 Aligned_cols=207 Identities=31% Similarity=0.532 Sum_probs=183.0
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 61 (208)
T cd03268 1 LKTNDLTKTY----------------GKK-RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD--SGEITFDG 61 (208)
T ss_pred CEEEEEEEEE----------------CCe-EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECC
Confidence 4689999998 334 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
+++.. ...++.++|++|++.+++.+||+||+.+....+. . .+++++++++.+||.+..++.+ +.|||||
T Consensus 62 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 131 (208)
T cd03268 62 KSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG-I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGM 131 (208)
T ss_pred CcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC-C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHH
Confidence 98643 3445679999999999999999999998765321 1 2456788999999998888776 5999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 132 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 132 KQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999999875 5899999999998 477899999999999998765
No 77
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=372.36 Aligned_cols=218 Identities=29% Similarity=0.382 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|+++.++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 4 ~l~~~~l~~~~~---------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 65 (274)
T PRK13647 4 IIEVEDLHFRYK---------------DGT-KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVM 65 (274)
T ss_pred eEEEEEEEEEeC---------------CCC-eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ceEEEEC
Confidence 589999999982 223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++|++|++. .++..||.||+.++.... ....++.+++++++++.+||.+..++.+ ..|
T Consensus 66 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 139 (274)
T PRK13647 66 GREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM-GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHL 139 (274)
T ss_pred CEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhC
Confidence 998753 345667999999963 445679999999875432 2233445567899999999998888776 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|+++
T Consensus 140 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~ 217 (274)
T PRK13647 140 SYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVD-LAAEWADQVIVLKEGRVL 217 (274)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999975 4899999999997 477899999999999999
Q ss_pred EEcChhHH
Q 044112 254 HHGSLDLL 261 (610)
Q Consensus 254 ~~g~~~~~ 261 (610)
+.|+++++
T Consensus 218 ~~g~~~~~ 225 (274)
T PRK13647 218 AEGDKSLL 225 (274)
T ss_pred EECCHHHh
Confidence 99998754
No 78
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=5e-45 Score=363.94 Aligned_cols=214 Identities=31% Similarity=0.476 Sum_probs=186.0
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 61 (222)
T cd03224 1 LEVENLNAGY----------------GKS-QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR--SGSIRFDG 61 (222)
T ss_pred CEEeeEEeec----------------CCe-eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC
Confidence 4689999988 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCcc
Q 044112 99 QPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKEL-GLEHVANVRIGGESSRGI 173 (610)
Q Consensus 99 ~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~L 173 (610)
+++.. .. .++.++|++|++.+++.+|++||+.+....+. ..+.+++++++++.+ ++.+..++.+ +.|
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~L 133 (222)
T cd03224 62 RDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR---RAKRKARLERVYELFPRLKERRKQLA-----GTL 133 (222)
T ss_pred EEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC---chhHHHHHHHHHHHHHhhhhhhhCch-----hhC
Confidence 98743 12 35679999999999999999999998765321 223345677888888 5777777665 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||++|+.+|++++|||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.+++|++++|++|+++
T Consensus 134 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 211 (222)
T cd03224 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNAR-FALEIADRAYVLERGRVV 211 (222)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhccEEEEeeCCeEE
Confidence 99999999999999999999999999999999999999999999975 5899999999997 478999999999999999
Q ss_pred EEcChhHH
Q 044112 254 HHGSLDLL 261 (610)
Q Consensus 254 ~~g~~~~~ 261 (610)
..|+++++
T Consensus 212 ~~~~~~~~ 219 (222)
T cd03224 212 LEGTAAEL 219 (222)
T ss_pred EeCCHHHH
Confidence 99988764
No 79
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.1e-44 Score=381.86 Aligned_cols=235 Identities=23% Similarity=0.339 Sum_probs=195.8
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++||+++|..+.... ..+..++.. .+++|||+++++||+++|+|+||||||||+++|+|++++. +|+|.
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~---~~~~~~~~~-~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~--~G~I~ 79 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQ---WFWQPPKTL-KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT--DGEVA 79 (331)
T ss_pred CceEEEeCeEEEECCCCccc---cccccCCce-EEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC--CcEEE
Confidence 35799999999994211000 000011223 6999999999999999999999999999999999999876 99999
Q ss_pred ECCEeCCh------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCc-ccccccc
Q 044112 96 VNEQPMNI------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRL-HVGLNRAKARVSELLKELGLE-HVANVRI 165 (610)
Q Consensus 96 ~~g~~~~~------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 165 (610)
++|+++.. ..+++.++||+|++ .++|.+||.||+.+...... ..+.++.++++.++++.+||. +..++.+
T Consensus 80 ~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p 159 (331)
T PRK15079 80 WLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159 (331)
T ss_pred ECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCc
Confidence 99998742 13467899999997 58899999999998765432 124455667889999999995 4556554
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
++|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++.|.|+|++|||++ .+.+++|+++
T Consensus 160 -----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~ 233 (331)
T PRK15079 160 -----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVL 233 (331)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 6999999999999999999999999999999999999999999999997766899999999998 4788999999
Q ss_pred EeeCCeEEEEcChhHHH
Q 044112 246 LLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~~ 262 (610)
+|++|++++.|+++++.
T Consensus 234 vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 234 VMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999988764
No 80
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-44 Score=378.12 Aligned_cols=239 Identities=26% Similarity=0.400 Sum_probs=196.9
Q ss_pred CCCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCce
Q 044112 12 DRKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVS 91 (610)
Q Consensus 12 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~ 91 (610)
+......|+++|+++.|..+ ....+ .+|+|+|+++++||++||+||||||||||+++|+|+++|. +
T Consensus 15 ~~~~~~~l~~~nl~~~y~~~-----------~~~~~-~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~--~ 80 (320)
T PRK13631 15 PLSDDIILRVKNLYCVFDEK-----------QENEL-VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK--Y 80 (320)
T ss_pred CCCCCceEEEEeEEEEeCCC-----------Ccccc-cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--C
Confidence 33334579999999999311 00123 6999999999999999999999999999999999999876 9
Q ss_pred eEEEECCEeCCh-------------------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 044112 92 GSVLVNEQPMNI-------------------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSE 150 (610)
Q Consensus 92 G~I~~~g~~~~~-------------------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~ 150 (610)
|+|.++|+++.. ..+++.++||+|++ .+++ .||+||+.++.... ..+.++..+++++
T Consensus 81 G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~ 158 (320)
T PRK13631 81 GTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL-GVKKSEAKKLAKF 158 (320)
T ss_pred CeEEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc-CCCHHHHHHHHHH
Confidence 999999987632 24567899999987 4665 49999999875432 2244455678899
Q ss_pred HHHHcCCc-ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 044112 151 LLKELGLE-HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLT 229 (610)
Q Consensus 151 ~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~ 229 (610)
+++.+||. +..++.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ +|+|||++
T Consensus 159 ~l~~~gL~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~Tiiiv 232 (320)
T PRK13631 159 YLNKMGLDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVI 232 (320)
T ss_pred HHHHcCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 99999996 5666554 69999999999999999999999999999999999999999999999875 58999999
Q ss_pred ecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH---HHHHHcCCCCC
Q 044112 230 IHQPGFRILELFDQILLLSKGTVVHHGSLDLLE---HRLRIAGHSIP 273 (610)
Q Consensus 230 ~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~---~~~~~~g~~~p 273 (610)
||+++ ++.++||++++|++|+++..|+++++. +.+...+...|
T Consensus 233 tHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 233 THTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred ecCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 99997 477899999999999999999998764 23444455544
No 81
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-45 Score=367.13 Aligned_cols=219 Identities=27% Similarity=0.551 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 3 ~l~~~~l~~~~----------------~~~-~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 63 (241)
T PRK10895 3 TLTAKNLAKAY----------------KGR-RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD--AGNIIID 63 (241)
T ss_pred eEEEeCcEEEe----------------CCE-EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEC
Confidence 58999999998 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|.++.. ...++.++|++|++.+++.+||+||+.+....+.....++.+++++++++.+|+.+..++.+ +.|
T Consensus 64 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 138 (241)
T PRK10895 64 DEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-----QSL 138 (241)
T ss_pred CEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhC
Confidence 998743 22456799999999999999999999886543211223344567899999999988777665 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|++|+++
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~ 216 (241)
T PRK10895 139 SGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNVR-ETLAVCERAYIVSQGHLI 216 (241)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999874 5899999999997 588999999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
+.|++++..
T Consensus 217 ~~~~~~~~~ 225 (241)
T PRK10895 217 AHGTPTEIL 225 (241)
T ss_pred eeCCHHHHh
Confidence 999987653
No 82
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.6e-44 Score=366.46 Aligned_cols=218 Identities=30% Similarity=0.438 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCC---ceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRR---VSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~---~~G~I 94 (610)
+|+++||++++ +.+ .+++|+|+++++||+++|+||||||||||+++|+|+++|.+ .+|+|
T Consensus 1 ~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i 63 (247)
T TIGR00972 1 AIEIENLNLFY----------------GEK-EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV 63 (247)
T ss_pred CEEEEEEEEEE----------------CCe-eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEE
Confidence 47899999998 334 69999999999999999999999999999999999987631 28999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccccccc
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVRI 165 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v 165 (610)
.++|+++.. ...++.++|++|++.+++ +|++||+.+....+...+.++.+++++++++.+||. +..++.+
T Consensus 64 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 142 (247)
T TIGR00972 64 LFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSA 142 (247)
T ss_pred EECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc
Confidence 999998742 234678999999999888 999999998765432113344556789999999997 5566554
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|+++
T Consensus 143 -----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~ 214 (247)
T TIGR00972 143 -----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNMQ-QAARISDRTA 214 (247)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCHH-HHHHhCCEEE
Confidence 69999999999999999999999999999999999999999999999864 489999999997 4889999999
Q ss_pred EeeCCeEEEEcChhHH
Q 044112 246 LLSKGTVVHHGSLDLL 261 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~ 261 (610)
+|++|+++..|+++++
T Consensus 215 ~l~~G~i~~~~~~~~~ 230 (247)
T TIGR00972 215 FFYDGELVEYGPTEQI 230 (247)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998765
No 83
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=374.63 Aligned_cols=223 Identities=29% Similarity=0.468 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.|..+ ....+ .+|+|||+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 2 ~l~~~~l~~~y~~~-----------~~~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~--~G~i~~~ 67 (286)
T PRK13646 2 TIRFDNVSYTYQKG-----------TPYEH-QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT--TGTVTVD 67 (286)
T ss_pred EEEEEEEEEEECCC-----------Ccccc-CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEC
Confidence 48999999999310 11123 6999999999999999999999999999999999999877 9999999
Q ss_pred CEeCCh-------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccC
Q 044112 98 EQPMNI-------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 167 (610)
|+++.. ...++.+|||+|++ .+++ .||+||+.++.... ..+.++..++++++++.+||. +..++.+
T Consensus 68 g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (286)
T PRK13646 68 DITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF-KMNLDEVKNYAHRLLMDLGFSRDVMSQSP-- 143 (286)
T ss_pred CEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCCc--
Confidence 998742 24567899999986 4555 59999999876432 223445567889999999997 5667655
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|
T Consensus 144 ---~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l 219 (286)
T PRK13646 144 ---FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVM 219 (286)
T ss_pred ---ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999997666899999999998 478899999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|++++.|+++++.
T Consensus 220 ~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 220 KEGSIVSQTSPKELF 234 (286)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988754
No 84
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-45 Score=356.39 Aligned_cols=221 Identities=26% Similarity=0.508 Sum_probs=205.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|++++|++++ +.+ .+++|+||++++|+|.+++|||||||||.+++|.|+++|+ +|+|.++
T Consensus 2 ~L~ie~vtK~F----------------g~k-~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~--~G~I~~~ 62 (300)
T COG4152 2 ALEIEGVTKSF----------------GDK-KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT--EGEITWN 62 (300)
T ss_pred ceEEecchhcc----------------Cce-eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc--CceEEEc
Confidence 58899999998 666 8999999999999999999999999999999999999987 9999999
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
|.+++ ...+.+|||.|++..|+|.+||.|.|.|.++++ +.+.++.+++++.+|+++++.....++| ++||.|+
T Consensus 63 g~~~~-~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk-Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGn 135 (300)
T COG4152 63 GGPLS-QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK-GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGN 135 (300)
T ss_pred Ccchh-hhhhhhcccChhhhccCccCcHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhh
Confidence 99986 445678999999999999999999999999986 4467788899999999999999988887 6999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
+|++.+..+++++|++++||||+|||||.+.+.+-+.+.+++ +.|.|||+|+|.++ .+.++||++++|++|+.|.+|+
T Consensus 136 qQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk-~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 136 QQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK-EEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH-hcCCEEEEecchHH-HHHHHhhhhheecCCceEEecc
Confidence 999999999999999999999999999999999999999997 46999999999998 4999999999999999999999
Q ss_pred hhHHHHHHH
Q 044112 258 LDLLEHRLR 266 (610)
Q Consensus 258 ~~~~~~~~~ 266 (610)
.+++...+.
T Consensus 214 v~~ir~~~G 222 (300)
T COG4152 214 VEDIRRSFG 222 (300)
T ss_pred HHHHHHhcC
Confidence 999887553
No 85
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.5e-44 Score=367.79 Aligned_cols=218 Identities=32% Similarity=0.474 Sum_probs=189.6
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++||++.+ +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|
T Consensus 1 i~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 61 (252)
T TIGR03005 1 VRFSDVTKRF----------------GIL-TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID--EGQIQVEG 61 (252)
T ss_pred CEEEEEEEEe----------------CCe-eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh----------------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccc
Q 044112 99 QPMNI----------------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN 162 (610)
Q Consensus 99 ~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 162 (610)
+++.. ...++.++|++|++.+++..|++||+.++.........++.+++++++++.+|+.+..+
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 141 (252)
T TIGR03005 62 EQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD 141 (252)
T ss_pred EEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh
Confidence 88631 13467899999999999999999999986432111223344567889999999988777
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|
T Consensus 142 ~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d 215 (252)
T TIGR03005 142 HMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFAD 215 (252)
T ss_pred cCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcC
Confidence 665 6999999999999999999999999999999999999999999999997656899999999998 4788999
Q ss_pred eEEEeeCCeEEEEcChhHH
Q 044112 243 QILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~~~ 261 (610)
++++|++|++++.|+++++
T Consensus 216 ~i~~l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 216 RVCFFDKGRIVEQGKPDEI 234 (252)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999988765
No 86
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2e-44 Score=367.86 Aligned_cols=218 Identities=30% Similarity=0.459 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+++ +|+|.++
T Consensus 5 ~l~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~ 65 (257)
T PRK10619 5 KLNVIDLHKRY----------------GEH-EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGSIVVN 65 (257)
T ss_pred cEEEeeeEEEE----------------CCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEEC
Confidence 48999999998 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh----------------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc
Q 044112 98 EQPMNI----------------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA 161 (610)
Q Consensus 98 g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 161 (610)
|+++.. ..+++.++|++|++.+++.+||+||+.++.........++.++++.++++.+|+.+..
T Consensus 66 g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~ 145 (257)
T PRK10619 66 GQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA 145 (257)
T ss_pred CEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh
Confidence 987631 2345779999999999999999999987542111223344567789999999998753
Q ss_pred -cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 162 -NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 162 -~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
++.+ ++||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++
T Consensus 146 ~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~~-~~~~~ 218 (257)
T PRK10619 146 QGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FARHV 218 (257)
T ss_pred hhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHh
Confidence 5544 69999999999999999999999999999999999999999999999975 5899999999997 47889
Q ss_pred cceEEEeeCCeEEEEcChhHH
Q 044112 241 FDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~~~~ 261 (610)
||++++|++|++++.|++++.
T Consensus 219 ~d~i~~l~~G~i~~~~~~~~~ 239 (257)
T PRK10619 219 SSHVIFLHQGKIEEEGAPEQL 239 (257)
T ss_pred cCEEEEEECCEEEEeCCHHHh
Confidence 999999999999999998765
No 87
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-44 Score=375.68 Aligned_cols=223 Identities=26% Similarity=0.409 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.|..+ .+... .+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++
T Consensus 2 ~i~~~~l~~~y~~~-----------~~~~~-~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~--~G~i~~~ 67 (305)
T PRK13651 2 QIKVKNIVKIFNKK-----------LPTEL-KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD--TGTIEWI 67 (305)
T ss_pred EEEEEEEEEEECCC-----------CCccc-cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEe
Confidence 48999999999311 01123 5999999999999999999999999999999999999886 8999999
Q ss_pred CEeCC---------------------------hhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHH
Q 044112 98 EQPMN---------------------------ITQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVS 149 (610)
Q Consensus 98 g~~~~---------------------------~~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~ 149 (610)
|++.. ....++.+|||+|++ ..+...||+||+.|+.... ..+.++.+++++
T Consensus 68 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~-~~~~~~~~~~~~ 146 (305)
T PRK13651 68 FKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM-GVSKEEAKKRAA 146 (305)
T ss_pred ceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc-CCCHHHHHHHHH
Confidence 87541 123567899999985 2334579999999876532 234555667899
Q ss_pred HHHHHcCCc-ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE
Q 044112 150 ELLKELGLE-HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVL 228 (610)
Q Consensus 150 ~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~ 228 (610)
++++.+||. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+
T Consensus 147 ~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiii 220 (305)
T PRK13651 147 KYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKTIIL 220 (305)
T ss_pred HHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE
Confidence 999999996 6677665 69999999999999999999999999999999999999999999999974 5999999
Q ss_pred EecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 229 TIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 229 ~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
+||+++ .+.+++|++++|++|++++.|+++++.
T Consensus 221 vtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 221 VTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999997 478999999999999999999998864
No 88
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.6e-45 Score=360.11 Aligned_cols=204 Identities=33% Similarity=0.541 Sum_probs=176.6
Q ss_pred EEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCE
Q 044112 20 RTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ 99 (610)
Q Consensus 20 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~ 99 (610)
+++|++++|. +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|+
T Consensus 1 ~~~~l~~~~~---------------~~~-~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~ 62 (205)
T cd03226 1 RIENISFSYK---------------KGT-EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES--SGSILLNGK 62 (205)
T ss_pred CcccEEEEeC---------------CcC-ceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECCE
Confidence 3678888882 114 7999999999999999999999999999999999999876 999999999
Q ss_pred eCChhcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHh
Q 044112 100 PMNITQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEK 178 (610)
Q Consensus 100 ~~~~~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 178 (610)
++.....++.++|++|++. .+..+||+||+.+..... . ..+++++++++.+||.+..++.+ ++||||||
T Consensus 63 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 132 (205)
T cd03226 63 PIKAKERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL-D----AGNEQAETVLKDLDLYALKERHP-----LSLSGGQK 132 (205)
T ss_pred EhhhHHhhcceEEEecChhhhhhhccHHHHHhhhhhhc-C----ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHH
Confidence 8754445678999999974 344679999998865432 1 12356889999999998888776 59999999
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 179 RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 179 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++
T Consensus 133 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 133 QRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999999999999975 4899999999997 478899999999999874
No 89
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=364.63 Aligned_cols=217 Identities=29% Similarity=0.466 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.| +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++
T Consensus 2 ~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 62 (242)
T PRK11124 2 SIQLNGINCFY----------------GAH-QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIA 62 (242)
T ss_pred EEEEEeeEEEE----------------CCe-eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 58999999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCC---------hhcccceEEEEccCCCCCCCCCHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 044112 98 EQPMN---------ITQFRRISGYVTQDEVLFPLLTVKETLMYS-ARLRLHVGLNRAKARVSELLKELGLEHVANVRIGG 167 (610)
Q Consensus 98 g~~~~---------~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 167 (610)
|+++. ....++.++|++|++.+++.+||.||+.+. .... ....++..+++.++++.+|+.+..++.+
T Consensus 63 g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 139 (242)
T PRK11124 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL-GLSKDQALARAEKLLERLRLKPYADRFP-- 139 (242)
T ss_pred CEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99762 123456799999999999999999999753 2222 1223344567899999999988777766
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+++|++++|
T Consensus 140 ---~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~~~~~d~i~~l 214 (242)
T PRK11124 140 ---LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEVE-VARKTASRVVYM 214 (242)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 69999999999999999999999999999999999999999999999864 5899999999997 477899999999
Q ss_pred eCCeEEEEcChhHH
Q 044112 248 SKGTVVHHGSLDLL 261 (610)
Q Consensus 248 ~~G~iv~~g~~~~~ 261 (610)
++|++++.|++++.
T Consensus 215 ~~g~i~~~~~~~~~ 228 (242)
T PRK11124 215 ENGHIVEQGDASCF 228 (242)
T ss_pred ECCEEEEeCCHHHh
Confidence 99999999987753
No 90
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.2e-44 Score=359.07 Aligned_cols=208 Identities=32% Similarity=0.494 Sum_probs=181.7
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 61 (213)
T cd03262 1 IEIKNLHKSF----------------GDF-HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD--SGTIIIDG 61 (213)
T ss_pred CEEEEEEEEE----------------CCe-EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 99 QPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 99 ~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
+++.. ...++.++|++|++.+++.+|++||+.+..........++.+++++++++.+|+.+..++.+ ++|
T Consensus 62 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 136 (213)
T cd03262 62 LKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP-----AQL 136 (213)
T ss_pred EECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----ccc
Confidence 98732 24567899999999999999999999986532112233445567899999999988777776 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|++
T Consensus 137 S~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 137 SGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999999975 5899999999997 57889999999999974
No 91
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.8e-44 Score=361.29 Aligned_cols=218 Identities=28% Similarity=0.433 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|.. +.+.. .+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++
T Consensus 1 ~l~~~~v~~~~~~------------~~~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 65 (228)
T cd03257 1 LLEVKNLSVSFPT------------GGGSV-KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT--SGSIIFD 65 (228)
T ss_pred CeEEEeeeEeccC------------CCcce-eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEC
Confidence 3789999999831 00112 5999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHHcCCc-ccccccccC
Q 044112 98 EQPMNI------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKAR-VSELLKELGLE-HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~ 167 (610)
|+++.. ..+++.++|++|++ .+++.+||+||+.+..........++..++ ++++++.+++. +..++.+
T Consensus 66 g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 143 (228)
T cd03257 66 GKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYP-- 143 (228)
T ss_pred CEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCc--
Confidence 998743 23567899999998 467789999999987554322112222222 36889999995 5666665
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|
T Consensus 144 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l 219 (228)
T cd03257 144 ---HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVM 219 (228)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEE
Confidence 5899999999999999999999999999999999999999999999997655899999999997 477899999999
Q ss_pred eCCeEEEEc
Q 044112 248 SKGTVVHHG 256 (610)
Q Consensus 248 ~~G~iv~~g 256 (610)
++|+++..|
T Consensus 220 ~~G~i~~~g 228 (228)
T cd03257 220 YAGKIVEEG 228 (228)
T ss_pred eCCEEEecC
Confidence 999998654
No 92
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-44 Score=366.96 Aligned_cols=214 Identities=30% Similarity=0.490 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++
T Consensus 1 ml~~~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 61 (255)
T PRK11248 1 MLQISHLYADY----------------GGK-PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLD 61 (255)
T ss_pred CEEEEEEEEEe----------------CCe-eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEC
Confidence 47899999998 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
|+++.. .++.++|++|++.+++.+||+||+.+....+ ....++.+++++++++.+||.+..++.+ ..|||||
T Consensus 62 g~~~~~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 133 (255)
T PRK11248 62 GKPVEG--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQ 133 (255)
T ss_pred CEECCC--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHH
Confidence 998743 2345899999999999999999999875432 1233444567899999999988777665 5999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee--CCeEEEE
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS--KGTVVHH 255 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~--~G~iv~~ 255 (610)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|+ +|+++..
T Consensus 134 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 134 RQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEE
Confidence 999999999999999999999999999999999999999986556899999999998 5889999999998 5999988
Q ss_pred cChh
Q 044112 256 GSLD 259 (610)
Q Consensus 256 g~~~ 259 (610)
++.+
T Consensus 213 ~~~~ 216 (255)
T PRK11248 213 LPLN 216 (255)
T ss_pred ecCC
Confidence 7654
No 93
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-44 Score=370.95 Aligned_cols=220 Identities=30% Similarity=0.476 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.|. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++
T Consensus 5 ~l~~~~l~~~~~---------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~--~G~i~i~ 66 (283)
T PRK13636 5 ILKVEELNYNYS---------------DGT-HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS--SGRILFD 66 (283)
T ss_pred eEEEEeEEEEeC---------------CCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ccEEEEC
Confidence 589999999992 224 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCC-----hhcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMN-----ITQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~-----~~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++. ...+++.++|++|++. .+...||+||+.+..... ..+.++.+++++++++.+||.+..++.+ +
T Consensus 67 g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 140 (283)
T PRK13636 67 GKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEHLKDKPT-----H 140 (283)
T ss_pred CEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhhhhCCc-----c
Confidence 99873 1345678999999973 334579999999875432 2234445577899999999998888776 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|+
T Consensus 141 ~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~ 219 (283)
T PRK13636 141 CLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGR 219 (283)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999998655899999999998 4778999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|++++..
T Consensus 220 i~~~g~~~~~~ 230 (283)
T PRK13636 220 VILQGNPKEVF 230 (283)
T ss_pred EEEeCCHHHHh
Confidence 99999998764
No 94
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.5e-44 Score=358.63 Aligned_cols=208 Identities=32% Similarity=0.476 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 1 ~l~~~~l~~~~~---------------~~~-~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~ 62 (214)
T TIGR02673 1 MIEFHNVSKAYP---------------GGV-AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIA 62 (214)
T ss_pred CEEEEeeeEEeC---------------CCc-eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEC
Confidence 378999999982 223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. ..+++.++|++|++.+++.+||+||+.+....+. ...+..+++++++++.+||.+..++.+ .
T Consensus 63 g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 136 (214)
T TIGR02673 63 GEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG-KKEREIQRRVGAALRQVGLEHKADAFP-----E 136 (214)
T ss_pred CEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhhhhCCh-----h
Confidence 998742 1345779999999999999999999998765431 223344567899999999988777766 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+
T Consensus 137 ~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999999999999865 5899999999997 5888999999999985
No 95
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-44 Score=367.04 Aligned_cols=219 Identities=27% Similarity=0.417 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 5 ~l~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 65 (255)
T PRK11300 5 LLSVSGLMMRF----------------GGL-LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT--GGTILLR 65 (255)
T ss_pred eEEEeeEEEEE----------------CCE-EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC--cceEEEC
Confidence 69999999998 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-----------C---CCHHHHHHHHHHHHHHcCCcc
Q 044112 98 EQPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRL-----------H---VGLNRAKARVSELLKELGLEH 159 (610)
Q Consensus 98 g~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~-----------~---~~~~~~~~~v~~~l~~lgL~~ 159 (610)
|+++.. .. .+..++|++|++.+++.+||+||+.++..... + ....+..++++++++.+||.+
T Consensus 66 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 145 (255)
T PRK11300 66 GQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE 145 (255)
T ss_pred CEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh
Confidence 998743 12 23458999999999999999999998643110 0 011123456888999999988
Q ss_pred cccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH
Q 044112 160 VANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE 239 (610)
Q Consensus 160 ~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~ 239 (610)
..++.+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+
T Consensus 146 ~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~ 219 (255)
T PRK11300 146 HANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMG 219 (255)
T ss_pred hhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHH
Confidence 877776 5999999999999999999999999999999999999999999999997655899999999998 5789
Q ss_pred hcceEEEeeCCeEEEEcChhHH
Q 044112 240 LFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 240 ~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
++|++++|++|++++.|+++++
T Consensus 220 ~~d~i~~l~~g~i~~~~~~~~~ 241 (255)
T PRK11300 220 ISDRIYVVNQGTPLANGTPEEI 241 (255)
T ss_pred hCCEEEEEECCeEEecCCHHHH
Confidence 9999999999999999998765
No 96
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-44 Score=371.80 Aligned_cols=205 Identities=31% Similarity=0.430 Sum_probs=181.2
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hc----ccceEEEEccCCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQ----FRRISGYVTQDEVLFP 121 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~----~~~~~~yv~Q~~~l~~ 121 (610)
.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .. .++.++|++|++.+++
T Consensus 38 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~--~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 115 (269)
T cd03294 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT--SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLP 115 (269)
T ss_pred eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCC
Confidence 6999999999999999999999999999999999999876 9999999998742 11 2357999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC
Q 044112 122 LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS 201 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 201 (610)
.+||+||+.+..... ....++..++++++++.+||.+..++.+ ++||||||||++||+||+.+|++|+|||||+
T Consensus 116 ~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illLDEPt~ 189 (269)
T cd03294 116 HRTVLENVAFGLEVQ-GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFS 189 (269)
T ss_pred CCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 999999999876543 1223344567889999999998888776 5899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 202 GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 202 gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++++.|+++++.
T Consensus 190 ~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999997656899999999997 478999999999999999999987653
No 97
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=363.57 Aligned_cols=217 Identities=27% Similarity=0.384 Sum_probs=188.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+
T Consensus 4 ~~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~ 64 (237)
T PRK11614 4 VMLSFDKVSAHY----------------GKI-QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT--SGRIVF 64 (237)
T ss_pred cEEEEEeEEEee----------------CCc-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CceEEE
Confidence 369999999998 334 7999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh---h-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCC
Q 044112 97 NEQPMNI---T-QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKEL-GLEHVANVRIGGESSR 171 (610)
Q Consensus 97 ~g~~~~~---~-~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~ 171 (610)
+|+++.. . ..++.++|++|++.+++.+||+||+.++.... ..++.+++++++++.+ ++.+..++.+ +
T Consensus 65 ~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~ 136 (237)
T PRK11614 65 DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA---ERDQFQERIKWVYELFPRLHERRIQRA-----G 136 (237)
T ss_pred CCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc---ChhHHHHHHHHHHHHHHHHHHHHhCch-----h
Confidence 9998743 1 24567999999999999999999998864321 1223345677788888 5776666554 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+
T Consensus 137 ~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 214 (237)
T PRK11614 137 TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNAN-QALKLADRGYVLENGH 214 (237)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHhhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999875 4899999999997 5889999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|+++++.
T Consensus 215 i~~~~~~~~~~ 225 (237)
T PRK11614 215 VVLEDTGDALL 225 (237)
T ss_pred EEeeCCHHHHh
Confidence 99999988764
No 98
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-44 Score=386.11 Aligned_cols=235 Identities=25% Similarity=0.360 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEecccccccc-----c--cc-ccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCC
Q 044112 18 RIRTKKLTYRSFRGVDEFNW-----F--CS-WKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRR 89 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~-----~--~~-~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~ 89 (610)
.|+++||++.+......... . .. .+..+.. .+|+|+|+++++||+++|+||||||||||||+|+|+++|+
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~- 81 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLS-LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT- 81 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCe-EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC-
Confidence 58999999988432211000 0 00 1111233 5899999999999999999999999999999999999876
Q ss_pred ceeEEEECCEeCCh---hc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccc
Q 044112 90 VSGSVLVNEQPMNI---TQ----FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN 162 (610)
Q Consensus 90 ~~G~I~~~g~~~~~---~~----~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 162 (610)
+|+|.++|+++.. .. .++.++|++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..+
T Consensus 82 -sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~-~~~~~~~~~~~~e~L~~~gL~~~~~ 159 (400)
T PRK10070 82 -RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA-GINAEERREKALDALRQVGLENYAH 159 (400)
T ss_pred -CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCChhhh
Confidence 9999999998742 11 2357999999999999999999999987643 2233455678899999999998888
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+.+ ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|
T Consensus 160 ~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~D 233 (400)
T PRK10070 160 SYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGD 233 (400)
T ss_pred cCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCC
Confidence 766 6999999999999999999999999999999999999999999999997666899999999998 5889999
Q ss_pred eEEEeeCCeEEEEcChhHHH
Q 044112 243 QILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~~~~ 262 (610)
++++|++|+++..|+++++.
T Consensus 234 ri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 234 RIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEEEECCEEEecCCHHHHH
Confidence 99999999999999988753
No 99
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=367.54 Aligned_cols=209 Identities=27% Similarity=0.469 Sum_probs=185.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+
T Consensus 11 ~~l~i~~l~~~~----------------~~~-~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~--~G~i~~ 71 (257)
T PRK11247 11 TPLLLNAVSKRY----------------GER-TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS--AGELLA 71 (257)
T ss_pred CcEEEEEEEEEE----------------CCc-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEE
Confidence 458999999999 334 7999999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+|.++. ..++.++|++|++.+++.+||+||+.+... ...++++.++++.+||.+..++.+ ..||||
T Consensus 72 ~g~~~~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 137 (257)
T PRK11247 72 GTAPLA--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------GQWRDAALQALAAVGLADRANEWP-----AALSGG 137 (257)
T ss_pred CCEEHH--HhhCceEEEecCccCCCCCcHHHHHHhccc-------chHHHHHHHHHHHcCChhHhcCCh-----hhCCHH
Confidence 998763 456779999999999998999999987531 112456889999999988777765 699999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++|++++|++|++++.|
T Consensus 138 qkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 138 QKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeec
Confidence 9999999999999999999999999999999999999999987666899999999997 478899999999999999988
Q ss_pred Chh
Q 044112 257 SLD 259 (610)
Q Consensus 257 ~~~ 259 (610)
+.+
T Consensus 217 ~~~ 219 (257)
T PRK11247 217 TVD 219 (257)
T ss_pred ccc
Confidence 754
No 100
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-44 Score=367.21 Aligned_cols=219 Identities=31% Similarity=0.462 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++| +++ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 2 ~l~~~~l~~~~----------------~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~--~G~i~~~ 62 (258)
T PRK13548 2 MLEARNLSVRL----------------GGR-TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLN 62 (258)
T ss_pred eEEEEeEEEEe----------------CCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEEC
Confidence 48899999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
|+++.. ...++.++|++|++.+++.+||+||+.+...... ...++.+++++++++.+||.+..++.+ ..||
T Consensus 63 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 136 (258)
T PRK13548 63 GRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG-LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLS 136 (258)
T ss_pred CEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC-CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCC
Confidence 998642 3345679999999988888999999998653221 122334567889999999988777776 5999
Q ss_pred HHHhhHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 175 GGEKRRVSIGVDLV------HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 175 gGerqRv~ia~aL~------~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|+
T Consensus 137 gGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~ 215 (258)
T PRK13548 137 GGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH 215 (258)
T ss_pred HHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEE
Confidence 99999999999999 5999999999999999999999999999997456899999999997 4788999999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|++++.|+++++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (258)
T PRK13548 216 QGRLVADGTPAEVL 229 (258)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999987653
No 101
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.9e-44 Score=357.86 Aligned_cols=208 Identities=31% Similarity=0.440 Sum_probs=181.6
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 1 l~~~~l~~~~~---------------~~~-~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 62 (214)
T cd03292 1 IEFINVTKTYP---------------NGT-AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT--SGTIRVNG 62 (214)
T ss_pred CEEEEEEEEeC---------------CCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECC
Confidence 46899999982 224 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 99 QPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 99 ~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
+++.. ...++.++|++|++.+++.+|++||+.+....+. ...++.+++++++++.+||++..++.+ ++
T Consensus 63 ~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (214)
T cd03292 63 QDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG-VPPREIRKRVPAALELVGLSHKHRALP-----AE 136 (214)
T ss_pred EEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hh
Confidence 98742 1356779999999999999999999998765432 233444567889999999988777766 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 137 LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999999999865 4899999999997 47789999999999974
No 102
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-44 Score=376.84 Aligned_cols=231 Identities=22% Similarity=0.299 Sum_probs=194.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++||++.|..+.. .+..++.. .+|+|||++|++||++||+|+||||||||+++|+|++++. +|+|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~------~~~~~~~~-~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~--~G~i~~ 74 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRG------LFKPERLV-KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT--GGELYY 74 (327)
T ss_pred ceEEEeeeEEEEcCCCC------ccccCCce-eEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC--CcEEEE
Confidence 36899999999942110 00001123 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccC
Q 044112 97 NEQPMNI------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGG 167 (610)
Q Consensus 97 ~g~~~~~------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~ 167 (610)
+|+++.. ..+++.++||+|++ .+.|.+|+.+++............++.++++.++++.+||.+ ..++.+
T Consensus 75 ~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p-- 152 (327)
T PRK11308 75 QGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYP-- 152 (327)
T ss_pred CCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCC--
Confidence 9998742 23567899999997 588999999999887654322234556678999999999963 556554
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
++|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++.|.|||++|||++ .+.+++|++++|
T Consensus 153 ---~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm 228 (327)
T PRK11308 153 ---HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVM 228 (327)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 7999999999999999999999999999999999999999999999998767999999999998 477899999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|++++.|+++++.
T Consensus 229 ~~G~ive~g~~~~~~ 243 (327)
T PRK11308 229 YLGRCVEKGTKEQIF 243 (327)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988764
No 103
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-44 Score=364.64 Aligned_cols=219 Identities=27% Similarity=0.393 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|++++. +.+|+|
T Consensus 7 ~l~~~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 69 (254)
T PRK14273 7 IIETENLNLFY----------------TDF-KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV 69 (254)
T ss_pred eEEEeeeEEEe----------------CCc-eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE
Confidence 69999999998 334 6999999999999999999999999999999999999763 248999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccccccc
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVRI 165 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v 165 (610)
.++|+++.. ...++.++|++|++.+++ +||+||+.++...+......+.+++++++++.+++. +..++.+
T Consensus 70 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 148 (254)
T PRK14273 70 IYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA 148 (254)
T ss_pred EECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc
Confidence 999998632 235678999999988885 899999998764331112334456788899999883 3445544
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
+.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ + ++|||++||+++ ++.+++|+++
T Consensus 149 -----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~sH~~~-~~~~~~d~i~ 220 (254)
T PRK14273 149 -----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-E-SYTIIIVTHNMQ-QAGRISDRTA 220 (254)
T ss_pred -----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhCCEEE
Confidence 6999999999999999999999999999999999999999999999995 3 689999999998 4788999999
Q ss_pred EeeCCeEEEEcChhHHH
Q 044112 246 LLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~~ 262 (610)
+|++|+++..|+++++.
T Consensus 221 ~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 221 FFLNGCIEEESSTDELF 237 (254)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988753
No 104
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-44 Score=357.52 Aligned_cols=209 Identities=36% Similarity=0.585 Sum_probs=183.3
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+++|+|+++++| +++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 1 i~~~~~~~~~----------------~~~-~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 60 (211)
T cd03264 1 LQLENLTKRY----------------GKK-RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDG 60 (211)
T ss_pred CEEEEEEEEE----------------CCE-EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECC
Confidence 4689999998 334 6999999999999 99999999999999999999999876 99999999
Q ss_pred EeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 99 QPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 99 ~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+++.. ...++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+||.+..++.+ ..||||
T Consensus 61 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 134 (211)
T cd03264 61 QDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG-IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGG 134 (211)
T ss_pred CccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHH
Confidence 87643 3456789999999999999999999998765432 223344567889999999998777766 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|++|++++.|
T Consensus 135 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 135 MRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999964 489999999997 477899999999999998764
No 105
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-44 Score=376.41 Aligned_cols=226 Identities=24% Similarity=0.361 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC--CceeEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR--RVSGSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~--~~~G~I~ 95 (610)
.|+++||++.|.. +.+.. .+|+||||++++||++||+||||||||||+++|+|++++. +.+|+|.
T Consensus 3 ~L~v~~l~~~~~~------------~~~~~-~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~ 69 (326)
T PRK11022 3 LLNVDKLSVHFGD------------ESAPF-RAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLE 69 (326)
T ss_pred eEEEeCeEEEECC------------CCccE-EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEE
Confidence 5899999999931 11123 6999999999999999999999999999999999998742 2489999
Q ss_pred ECCEeCCh---hc----ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc---cccc
Q 044112 96 VNEQPMNI---TQ----FRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH---VANV 163 (610)
Q Consensus 96 ~~g~~~~~---~~----~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~ 163 (610)
++|+++.. +. .++.++||+|++ .+.|.+|+.+++............++.++++.++++.+||.+ ..++
T Consensus 70 ~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~ 149 (326)
T PRK11022 70 FNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDV 149 (326)
T ss_pred ECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 99998742 22 224699999998 488999999998876654322344556778999999999975 2344
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
.+++|||||||||+||+||+.+|++|++||||+|||+.++.+++++|++++++.|.|+|++|||++ .+.+++|+
T Consensus 150 -----~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adr 223 (326)
T PRK11022 150 -----YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHK 223 (326)
T ss_pred -----CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCE
Confidence 457999999999999999999999999999999999999999999999998767999999999998 47789999
Q ss_pred EEEeeCCeEEEEcChhHHH
Q 044112 244 ILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~~ 262 (610)
+++|++|++++.|+++++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998764
No 106
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-44 Score=368.84 Aligned_cols=220 Identities=27% Similarity=0.417 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.|.. ..+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 5 ~l~~~~l~~~~~~--------------~~~-~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~--~G~i~~~ 67 (279)
T PRK13635 5 IIRVEHISFRYPD--------------AAT-YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE--AGTITVG 67 (279)
T ss_pred eEEEEEEEEEeCC--------------CCc-cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEEC
Confidence 5899999999821 123 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++|++|++ .+++..||.||+.++.... ....++.+++++++++.+||++..++.+ ..|
T Consensus 68 g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 141 (279)
T PRK13635 68 GMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLNREP-----HRL 141 (279)
T ss_pred CEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 998753 34567799999997 3677789999999876543 2234455677899999999998888776 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++.|+|||++||+++. +. .+|++++|++|+++
T Consensus 142 S~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~ 219 (279)
T PRK13635 142 SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEIL 219 (279)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986568999999999974 55 59999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
+.|+++++.
T Consensus 220 ~~g~~~~~~ 228 (279)
T PRK13635 220 EEGTPEEIF 228 (279)
T ss_pred EECCHHHHh
Confidence 999988764
No 107
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-44 Score=364.28 Aligned_cols=218 Identities=26% Similarity=0.415 Sum_probs=186.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~ 93 (610)
.+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+
T Consensus 11 ~~l~~~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~ 73 (258)
T PRK14268 11 PQIKVENLNLWY----------------GEK-QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGK 73 (258)
T ss_pred eeEEEeeeEEEe----------------CCe-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceE
Confidence 369999999998 334 6999999999999999999999999999999999998751 24999
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----cccccc
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVR 164 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ 164 (610)
|.++|+++.. ..+++.++|++|++.+++ +|++||+.+....+ ..+.++.+++++++++.+|+. +..++.
T Consensus 74 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 151 (258)
T PRK14268 74 VSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDETSDRLKSP 151 (258)
T ss_pred EEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 9999998642 234677999999998888 89999999876433 223334456788999999984 334554
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+ ..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+++|++
T Consensus 152 ~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~-~~tiiivsH~~~-~~~~~~d~i 223 (258)
T PRK14268 152 A-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-K-DYTIVIVTHNMQ-QAARISDYT 223 (258)
T ss_pred h-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-h-CCEEEEEECCHH-HHHHhCCEE
Confidence 4 6999999999999999999999999999999999999999999999985 3 789999999997 478899999
Q ss_pred EEeeCCeEEEEcChhHH
Q 044112 245 LLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~ 261 (610)
++|++|++++.|+++++
T Consensus 224 ~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 224 GFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998765
No 108
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-44 Score=370.83 Aligned_cols=222 Identities=26% Similarity=0.398 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.|.. .....+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 2 ~i~~~~l~~~~~~-----------~~~~~~-~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~--~G~i~~~ 67 (287)
T PRK13641 2 SIKFENVDYIYSP-----------GTPMEK-KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS--SGTITIA 67 (287)
T ss_pred EEEEEEEEEEcCC-----------CCCccc-cceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEC
Confidence 5889999999831 000113 6999999999999999999999999999999999999886 9999999
Q ss_pred CEeCCh-------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccC
Q 044112 98 EQPMNI-------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 167 (610)
|+++.. ...++.++|++|++ .++ .+||+||+.++.... ....++..++++++++.+||+ +..++.+
T Consensus 68 g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (287)
T PRK13641 68 GYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF-GFSEDEAKEKALKWLKKVGLSEDLISKSP-- 143 (287)
T ss_pred CEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhhCCc--
Confidence 998632 23456799999997 344 579999999876432 223445566789999999997 5777766
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|
T Consensus 144 ---~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~~-~~~~~~d~v~~l 218 (287)
T PRK13641 144 ---FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNMD-DVAEYADDVLVL 218 (287)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999964 5899999999998 488999999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 219 EHGKLIKHASPKEIF 233 (287)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
No 109
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-44 Score=368.51 Aligned_cols=220 Identities=31% Similarity=0.477 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++|. +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++
T Consensus 3 ~l~~~~l~~~~~---------------~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~ 64 (277)
T PRK13652 3 LIETRDLCYSYS---------------GSK-EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT--SGSVLIR 64 (277)
T ss_pred eEEEEEEEEEeC---------------CCC-ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEEC
Confidence 588999999982 223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++|++|++. .+...||.||+.+..... ....++.+++++++++.+||.+..++.+ +.|
T Consensus 65 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 138 (277)
T PRK13652 65 GEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL-GLDEETVAHRVSSALHMLGLEELRDRVP-----HHL 138 (277)
T ss_pred CEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccC
Confidence 998743 345677999999974 334579999998875432 2234445567899999999998888776 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.||++++|++|+++
T Consensus 139 S~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~ 217 (277)
T PRK13652 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIV 217 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999999999999997655899999999998 578999999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
+.|+++++.
T Consensus 218 ~~g~~~~~~ 226 (277)
T PRK13652 218 AYGTVEEIF 226 (277)
T ss_pred EECCHHHHh
Confidence 999998864
No 110
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=4.9e-44 Score=366.73 Aligned_cols=229 Identities=27% Similarity=0.383 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++.+..... ....+.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++
T Consensus 2 ~l~~~~l~~~~~~~~~-------~~~~~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 71 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL-------FGAKQRA-PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFR 71 (265)
T ss_pred eEEEEeEEEEeccCcc-------ccccCce-EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEC
Confidence 4889999999831000 0001134 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---h---cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 044112 98 EQPMNI---T---QFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGE 168 (610)
Q Consensus 98 g~~~~~---~---~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 168 (610)
|+++.. . ..++.++|++|++ .+++.+||+||+.+..........++.+++++++++.+||. +..++.+
T Consensus 72 g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 148 (265)
T TIGR02769 72 GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLP--- 148 (265)
T ss_pred CEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCCh---
Confidence 998742 1 2456799999996 46778999999987654211112334456789999999996 5667665
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++|++++|+
T Consensus 149 --~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 225 (265)
T TIGR02769 149 --RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD 225 (265)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe
Confidence 5999999999999999999999999999999999999999999999997655899999999998 4778999999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|++++.|+++++.
T Consensus 226 ~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 226 KGQIVEECDVAQLL 239 (265)
T ss_pred CCEEEEECCHHHHc
Confidence 99999999988753
No 111
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.6e-44 Score=357.63 Aligned_cols=212 Identities=33% Similarity=0.496 Sum_probs=180.8
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|++++|.. ..+.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++|
T Consensus 2 l~~~~v~~~~~~------------~~~~~-~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g 66 (221)
T TIGR02211 2 LKCENLGKRYQE------------GKLDT-RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT--SGEVLFNG 66 (221)
T ss_pred EEEEeeeEEccC------------CCcce-EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC
Confidence 688999999831 01123 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hc---cc-ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 99 QPMNI---TQ---FR-RISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 99 ~~~~~---~~---~~-~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
+++.. .. ++ +.++|++|++.+++.+||+||+.+....+. ....+..+++.++++.+||.+..++.+ +
T Consensus 67 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 140 (221)
T TIGR02211 67 QSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK-KSVKEAKERAYEMLEKVGLEHRINHRP-----S 140 (221)
T ss_pred EEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCChhhhhCCh-----h
Confidence 98742 11 23 579999999999999999999998754321 123334567889999999988777766 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+ +.+|++++|++|+
T Consensus 141 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~ 218 (221)
T TIGR02211 141 ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQ 218 (221)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999997656899999999997 35 4589999999998
Q ss_pred EE
Q 044112 252 VV 253 (610)
Q Consensus 252 iv 253 (610)
++
T Consensus 219 i~ 220 (221)
T TIGR02211 219 LF 220 (221)
T ss_pred ec
Confidence 75
No 112
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=367.50 Aligned_cols=222 Identities=24% Similarity=0.399 Sum_probs=192.3
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++||+++| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++++ +|+|.
T Consensus 5 ~~~l~i~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~ 65 (265)
T PRK10253 5 VARLRGEQLTLGY----------------GKY-TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA--HGHVW 65 (265)
T ss_pred ccEEEEEEEEEEE----------------CCE-EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEE
Confidence 4579999999999 334 6999999999999999999999999999999999999876 99999
Q ss_pred ECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 96 VNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 96 ~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
++|+++.. ...++.++|++|++.+++.+|++||+.+......+ ...+..+++++++++.+||.+..++.+
T Consensus 66 ~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (265)
T PRK10253 66 LDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV---- 141 (265)
T ss_pred ECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc----
Confidence 99998642 34456799999999999999999999875311100 111234457889999999988777766
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+++|++++|++
T Consensus 142 -~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~ 219 (265)
T PRK10253 142 -DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE 219 (265)
T ss_pred -ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999997655899999999998 58899999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|++++.|+++++.
T Consensus 220 G~i~~~g~~~~~~ 232 (265)
T PRK10253 220 GKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999987754
No 113
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-44 Score=366.41 Aligned_cols=218 Identities=28% Similarity=0.438 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +++ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 1 ml~~~~l~~~~----------------~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 61 (271)
T PRK13638 1 MLATSDLWFRY----------------QDE-PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ--KGAVLWQ 61 (271)
T ss_pred CeEEEEEEEEc----------------CCc-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ccEEEEC
Confidence 47899999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-----hcccceEEEEccCCCC-CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI-----TQFRRISGYVTQDEVL-FPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~-----~~~~~~~~yv~Q~~~l-~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. ...++.++|++|++.. +...|+.||+.+..... ....++..++++++++.+||.+..++.+ .
T Consensus 62 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 135 (271)
T PRK13638 62 GKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL-GVPEAEITRRVDEALTLVDAQHFRHQPI-----Q 135 (271)
T ss_pred CEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----h
Confidence 998731 2345679999999753 34568999998875432 2233444567889999999988877766 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+++|++++|++|+
T Consensus 136 ~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~~-~~~~~~d~i~~l~~G~ 213 (271)
T PRK13638 136 CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDID-LIYEISDAVYVLRQGQ 213 (271)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999975 4899999999998 4788999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|+++++.
T Consensus 214 i~~~g~~~~~~ 224 (271)
T PRK13638 214 ILTHGAPGEVF 224 (271)
T ss_pred EEEeCCHHHHh
Confidence 99999988754
No 114
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=9e-44 Score=374.90 Aligned_cols=230 Identities=24% Similarity=0.359 Sum_probs=194.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVL 95 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~ 95 (610)
..|+++||++.+.. .++.. .+|+||||++++||+++|+|+||||||||+++|+|++++. ..+|+|.
T Consensus 11 ~~L~i~~l~~~~~~------------~~~~~-~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~ 77 (330)
T PRK09473 11 ALLDVKDLRVTFST------------PDGDV-TAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSAT 77 (330)
T ss_pred ceEEEeCeEEEEec------------CCCCE-EEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEE
Confidence 46999999999841 11223 6999999999999999999999999999999999999763 2389999
Q ss_pred ECCEeCCh---hc---cc-ceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 044112 96 VNEQPMNI---TQ---FR-RISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG 166 (610)
Q Consensus 96 ~~g~~~~~---~~---~~-~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 166 (610)
++|+++.. .+ ++ +.++||+|++ .+.|.+|+.+++........+.+.++..+++.++++.+||.+..+. .
T Consensus 78 ~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~-~- 155 (330)
T PRK09473 78 FNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKR-M- 155 (330)
T ss_pred ECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHH-h-
Confidence 99998742 22 23 4799999998 6889999999998776543223445556788999999999753322 1
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.++++|||||||||+||+||+.+|++|++||||+|||+.++.++++.|++++++.|.|+|++|||++ .+.+++|++++
T Consensus 156 ~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~v 234 (330)
T PRK09473 156 KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLV 234 (330)
T ss_pred cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 24568999999999999999999999999999999999999999999999998766899999999998 47789999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+++++.
T Consensus 235 m~~G~ive~g~~~~i~ 250 (330)
T PRK09473 235 MYAGRTMEYGNARDVF 250 (330)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999998764
No 115
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-44 Score=355.43 Aligned_cols=210 Identities=30% Similarity=0.452 Sum_probs=180.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ . .|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|
T Consensus 1 i~~~~l~~~~----------------~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~--~G~i~~~g 59 (211)
T cd03298 1 VRLDKIRFSY----------------GEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLING 59 (211)
T ss_pred CEEEeEEEEe----------------CCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC
Confidence 4689999988 223 3 2999999999999999999999999999999999876 99999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
+++.. ...++.++|++|++.+++.+||+||+.+....+.. ..++.+++++++++.+||.+..++.+ .+|||||
T Consensus 60 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 60 VDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK-LTAEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred EEcCcCCHhHccEEEEecccccCCCCcHHHHHhcccccccC-ccHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 98743 22346799999999999999999999886432211 12234567899999999998777766 5999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999997656899999999997 478899999999999998654
No 116
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=6.8e-44 Score=357.10 Aligned_cols=218 Identities=46% Similarity=0.704 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC---CCCceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP---LRRVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~---~~~~~G~I 94 (610)
.+.++|+++++.. .+..+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++ +. +|+|
T Consensus 3 ~~~~~~~~~~~~~------------~~~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~--~G~i 67 (226)
T cd03234 3 VLPWWDVGLKAKN------------WNKYA-RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT--SGQI 67 (226)
T ss_pred cceeecceeeeec------------Ccccc-ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC--ceEE
Confidence 4789999999841 11124 79999999999999999999999999999999999997 55 9999
Q ss_pred EECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHH-HHHHcCCcccccccccCCCCC
Q 044112 95 LVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV--GLNRAKARVSE-LLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 95 ~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~ 171 (610)
.++|+++.....++.++|++|++.+++.+||+||+.++.....+. ..+...+++++ .++.+++.+..++.+ +
T Consensus 68 ~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (226)
T cd03234 68 LFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----K 142 (226)
T ss_pred EECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----c
Confidence 999998865556778999999999999999999999876543221 12222334555 899999988777665 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|+++.++.+++|++++|++|+
T Consensus 143 ~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G~ 221 (226)
T cd03234 143 GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSGE 221 (226)
T ss_pred CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999875 489999999998535899999999999999
Q ss_pred EEEEc
Q 044112 252 VVHHG 256 (610)
Q Consensus 252 iv~~g 256 (610)
+++.|
T Consensus 222 i~~~g 226 (226)
T cd03234 222 IVYSG 226 (226)
T ss_pred EEecC
Confidence 98765
No 117
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=6.1e-44 Score=360.99 Aligned_cols=217 Identities=30% Similarity=0.418 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.+ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++
T Consensus 2 ~i~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~ 62 (242)
T TIGR03411 2 ILYLEGLSVSF----------------DGF-KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD--EGSVLFG 62 (242)
T ss_pred eEEEEeeEEEc----------------CCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEEC
Confidence 47899999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---h-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcCCccccccccc
Q 044112 98 EQPMNI---T-QFRRISGYVTQDEVLFPLLTVKETLMYSARLRL-------HVGLNRAKARVSELLKELGLEHVANVRIG 166 (610)
Q Consensus 98 g~~~~~---~-~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 166 (610)
|+++.. . ..++.++|++|++.+++.+||+||+.+...... ....++.+++++++++.+|+.+..++.+
T Consensus 63 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~- 141 (242)
T TIGR03411 63 GTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA- 141 (242)
T ss_pred CeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-
Confidence 998642 1 234569999999999999999999998653211 0112334567899999999998877766
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||++++
T Consensus 142 ----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~-~~~~~~d~i~~ 214 (242)
T TIGR03411 142 ----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDME-FVRSIADKVTV 214 (242)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCHH-HHHHhCCEEEE
Confidence 59999999999999999999999999999999999999999999999863 689999999998 48889999999
Q ss_pred eeCCeEEEEcChhHH
Q 044112 247 LSKGTVVHHGSLDLL 261 (610)
Q Consensus 247 L~~G~iv~~g~~~~~ 261 (610)
|++|+++..|+++++
T Consensus 215 l~~g~~~~~~~~~~~ 229 (242)
T TIGR03411 215 LHQGSVLAEGSLDQV 229 (242)
T ss_pred EECCeEEeeCCHHHH
Confidence 999999999988765
No 118
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-44 Score=362.63 Aligned_cols=220 Identities=28% Similarity=0.401 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +.+|+|
T Consensus 4 ~l~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i 66 (253)
T PRK14267 4 AIETVNLRVYY----------------GSN-HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV 66 (253)
T ss_pred eEEEEeEEEEe----------------CCe-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence 58999999998 334 6999999999999999999999999999999999998763 348999
Q ss_pred EECCEeCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCcc----ccccc
Q 044112 95 LVNEQPMN-----ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH-VGLNRAKARVSELLKELGLEH----VANVR 164 (610)
Q Consensus 95 ~~~g~~~~-----~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~----~~~~~ 164 (610)
.++|+++. ...+++.++|++|++.+++.+||+||+.++...+.. ...++..++++++++.+|+.+ ..++.
T Consensus 67 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 146 (253)
T PRK14267 67 RLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDY 146 (253)
T ss_pred EECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccC
Confidence 99999874 124567899999999999999999999987643211 123344567889999999853 34444
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++
T Consensus 147 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~~~~~d~i 218 (253)
T PRK14267 147 -----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPA-QAARVSDYV 218 (253)
T ss_pred -----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCHH-HHHhhCCEE
Confidence 469999999999999999999999999999999999999999999999863 589999999997 478899999
Q ss_pred EEeeCCeEEEEcChhHHH
Q 044112 245 LLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~~ 262 (610)
++|++|++++.|+++++.
T Consensus 219 ~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 219 AFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999987653
No 119
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-44 Score=361.81 Aligned_cols=219 Identities=31% Similarity=0.428 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
.|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|
T Consensus 3 ~l~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 65 (250)
T PRK14247 3 KIEIRDLKVSF----------------GQV-EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV 65 (250)
T ss_pred eEEEEeeEEEE----------------CCe-eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE
Confidence 58999999998 334 6999999999999999999999999999999999998742 359999
Q ss_pred EECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 044112 95 LVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH-VGLNRAKARVSELLKELGLEH----VANVRIG 166 (610)
Q Consensus 95 ~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~----~~~~~vg 166 (610)
.++|+++.. ..+++.++|++|++.+++.+||+||+.++...+.. ...++.+++++++++.+||.+ ..++.+
T Consensus 66 ~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 144 (250)
T PRK14247 66 YLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPA- 144 (250)
T ss_pred EECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCc-
Confidence 999998742 34567899999999889999999999987543211 123444567889999999864 344444
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+.+|++++
T Consensus 145 ----~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i~~ 217 (250)
T PRK14247 145 ----GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK-K-DMTIVLVTHFPQ-QAARISDYVAF 217 (250)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEEEE
Confidence 6999999999999999999999999999999999999999999999985 3 789999999997 47889999999
Q ss_pred eeCCeEEEEcChhHH
Q 044112 247 LSKGTVVHHGSLDLL 261 (610)
Q Consensus 247 L~~G~iv~~g~~~~~ 261 (610)
|++|+++..|+++++
T Consensus 218 l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 218 LYKGQIVEWGPTREV 232 (250)
T ss_pred EECCeEEEECCHHHH
Confidence 999999999998765
No 120
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-44 Score=343.65 Aligned_cols=219 Identities=31% Similarity=0.453 Sum_probs=193.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+.+||||+. ..+ .+|++||++++|||++||+||||||||||||.|+|.+.|+ +|++.+|
T Consensus 1 mi~a~nls~~~----------------~Gr-~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~--~G~v~~~ 61 (259)
T COG4559 1 MIRAENLSYSL----------------AGR-RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLN 61 (259)
T ss_pred CeeeeeeEEEe----------------ecc-eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC--CCeEeeC
Confidence 57899999998 445 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH-VGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|.+++. .++.++-+.+||+..+-...||+|-+.++..-... ....+..+.++++|...++.+.+.+.. ..|
T Consensus 62 g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~L 136 (259)
T COG4559 62 GVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDY-----RTL 136 (259)
T ss_pred CcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccch-----hhc
Confidence 999853 45667789999999886667999999998654321 122355567899999999999988776 699
Q ss_pred CHHHhhHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 174 SGGEKRRVSIGVDLVH------DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 174 SgGerqRv~ia~aL~~------~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
||||||||.+||.|++ ++++||||||||.||...++.++++.++++++ |..|+++.||++. ...+|||+++|
T Consensus 137 SGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~~V~~VLHDLNL-AA~YaDrivll 214 (259)
T COG4559 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GGAVLAVLHDLNL-AAQYADRIVLL 214 (259)
T ss_pred CchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CCcEEEEEccchH-HHHhhheeeee
Confidence 9999999999999987 45689999999999999999999999999975 7899999999996 78999999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++||++..|++++..
T Consensus 215 ~~Grv~a~g~p~~vl 229 (259)
T COG4559 215 HQGRVIASGSPQDVL 229 (259)
T ss_pred eCCeEeecCCHHHhc
Confidence 999999999999865
No 121
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-44 Score=366.37 Aligned_cols=221 Identities=25% Similarity=0.421 Sum_probs=191.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|+++.+ +.+ .+|+|+||++++||+++|+||||||||||+++|+|+++++ +|+|.+
T Consensus 10 ~~l~i~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~ 70 (265)
T PRK10575 10 TTFALRNVSFRV----------------PGR-TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS--EGEILL 70 (265)
T ss_pred ceEEEeeEEEEE----------------CCE-EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEE
Confidence 359999999998 334 7999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
+|+++.. ..+++.++|++|+..+++.+|+.||+.+....... ......+++++++++.++|.+..++.+
T Consensus 71 ~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 145 (265)
T PRK10575 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV----- 145 (265)
T ss_pred CCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----
Confidence 9998632 34566799999998888999999999875321111 112234567889999999988777776
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|++|
T Consensus 146 ~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G 224 (265)
T PRK10575 146 DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGG 224 (265)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 5899999999999999999999999999999999999999999999997655899999999998 588999999999999
Q ss_pred eEEEEcChhHHH
Q 044112 251 TVVHHGSLDLLE 262 (610)
Q Consensus 251 ~iv~~g~~~~~~ 262 (610)
+++..|+++++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999887653
No 122
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=6.8e-44 Score=356.11 Aligned_cols=210 Identities=30% Similarity=0.414 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.+. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 1 ~l~~~~l~~~~~---------------~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 62 (222)
T PRK10908 1 MIRFEHVSKAYL---------------GGR-QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS--AGKIWFS 62 (222)
T ss_pred CEEEEeeEEEec---------------CCC-eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 378999999982 223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---h---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI---T---QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~---~---~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. . .+++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..++.+ .
T Consensus 63 g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 136 (222)
T PRK10908 63 GHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA-GASGDDIRRRVSAALDKVGLLDKAKNFP-----I 136 (222)
T ss_pred CEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCChhhhhCCc-----h
Confidence 998642 1 24678999999999888999999999876543 1233344567889999999988777665 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||++||+++ ++.+.+|++++|++|+
T Consensus 137 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 214 (222)
T PRK10908 137 QLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIG-LISRRSYRMLTLSDGH 214 (222)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999975 4899999999998 4788999999999999
Q ss_pred EE
Q 044112 252 VV 253 (610)
Q Consensus 252 iv 253 (610)
++
T Consensus 215 i~ 216 (222)
T PRK10908 215 LH 216 (222)
T ss_pred Ec
Confidence 75
No 123
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.7e-44 Score=359.79 Aligned_cols=214 Identities=29% Similarity=0.471 Sum_probs=185.0
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++||++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 61 (230)
T TIGR03410 1 LEVSNLNVYY----------------GQS-HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK--SGSIRLDG 61 (230)
T ss_pred CEEEeEEEEe----------------CCe-EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEECC
Confidence 4689999998 334 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---h-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCcc
Q 044112 99 QPMNI---T-QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELG-LEHVANVRIGGESSRGI 173 (610)
Q Consensus 99 ~~~~~---~-~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~L 173 (610)
.++.. . ..++.++|++|++.+++.+|++||+.++...+.. . .++.++++++.++ +.+..++.+ +.|
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~l~~~~~~~~-----~~L 132 (230)
T TIGR03410 62 EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR-R---SRKIPDEIYELFPVLKEMLGRRG-----GDL 132 (230)
T ss_pred EECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc-c---hHHHHHHHHHHHHhHHHHhhCCh-----hhC
Confidence 98742 1 2356799999999999999999999987653211 1 2334577788876 566666665 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++
T Consensus 133 S~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~ 211 (230)
T TIGR03410 133 SGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVV 211 (230)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987655899999999997 578899999999999999
Q ss_pred EEcChhHH
Q 044112 254 HHGSLDLL 261 (610)
Q Consensus 254 ~~g~~~~~ 261 (610)
..|+.+++
T Consensus 212 ~~~~~~~~ 219 (230)
T TIGR03410 212 ASGAGDEL 219 (230)
T ss_pred EECCHHHc
Confidence 99998876
No 124
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-43 Score=361.04 Aligned_cols=224 Identities=27% Similarity=0.424 Sum_probs=186.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC---CCCCCceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM---IPLRRVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~---~~~~~~~G~ 93 (610)
.+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+ .++.+.+|+
T Consensus 2 ~~l~~~~~~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~ 64 (250)
T PRK14245 2 VKIDARDVNFWY----------------GDF-HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGE 64 (250)
T ss_pred cEEEEEEEEEEE----------------CCE-eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceE
Confidence 468999999998 334 699999999999999999999999999999999997 333224899
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 168 (610)
|.++|+++.. ...++.++|++|++.+++ .|++||+.++...+.....+..++.++++++.+||.+..+... +.
T Consensus 65 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 142 (250)
T PRK14245 65 IRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKL-KE 142 (250)
T ss_pred EEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhh-hC
Confidence 9999998742 245677999999998887 5999999987654321122334567889999999864221111 12
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++|+
T Consensus 143 ~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14245 143 SAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-K-DYTIVIVTHNMQ-QAARVSDKTAFFY 219 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999985 4 689999999998 4789999999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|++++.|+++++.
T Consensus 220 ~G~~~~~~~~~~~~ 233 (250)
T PRK14245 220 MGEMVEYDDTKKIF 233 (250)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988763
No 125
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-43 Score=366.09 Aligned_cols=222 Identities=29% Similarity=0.398 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|.. ++...+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~~-~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~--~G~i~~~ 67 (280)
T PRK13649 2 GINLQNVSYTYQA-----------GTPFEG-RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT--QGSVRVD 67 (280)
T ss_pred eEEEEEEEEEcCC-----------CCcccc-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 4889999999831 000113 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccC
Q 044112 98 EQPMNI-------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~-------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 167 (610)
|+++.. ...++.++|++|++ .+++ .||+||+.+..... ..+.++.+++++++++.+||. ...++.+
T Consensus 68 g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 143 (280)
T PRK13649 68 DTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF-GVSQEEAEALAREKLALVGISESLFEKNP-- 143 (280)
T ss_pred CEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhhhhCCc--
Confidence 998642 23566799999996 4555 69999999875432 123344556788999999997 4566665
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~-~~~~~~d~i~~l 218 (280)
T PRK13649 144 ---FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMD-DVANYADFVYVL 218 (280)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHH-HHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999999975 4899999999997 478899999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 219 EKGKLVLSGKPKDIF 233 (280)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988763
No 126
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-44 Score=367.08 Aligned_cols=218 Identities=29% Similarity=0.405 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++.+. +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++
T Consensus 1 ml~~~~l~~~~~---------------~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 62 (274)
T PRK13644 1 MIRLENVSYSYP---------------DGT-PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ--KGKVLVS 62 (274)
T ss_pred CEEEEEEEEEcC---------------CCC-ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEEC
Confidence 478999999982 223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh----hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 98 EQPMNI----TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 98 g~~~~~----~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
|.++.. ...++.++|++|++. .+...|++||+.+..... ..+.++.+++++++++.+||.+..++.+ +.
T Consensus 63 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 136 (274)
T PRK13644 63 GIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL-CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KT 136 (274)
T ss_pred CEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----cc
Confidence 998742 345677999999975 366689999999876432 2234455667899999999998888766 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. + ..+|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~~-~-~~~d~v~~l~~G~i 213 (274)
T PRK13644 137 LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLEE-L-HDADRIIVMDRGKI 213 (274)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-H-hhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 58999999999984 5 57999999999999
Q ss_pred EEEcChhHHH
Q 044112 253 VHHGSLDLLE 262 (610)
Q Consensus 253 v~~g~~~~~~ 262 (610)
++.|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (274)
T PRK13644 214 VLEGEPENVL 223 (274)
T ss_pred EEECCHHHHh
Confidence 9999988754
No 127
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-44 Score=363.78 Aligned_cols=218 Identities=28% Similarity=0.495 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +++ .+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++
T Consensus 2 ~l~~~~l~~~~----------------~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 62 (255)
T PRK11231 2 TLRTENLTVGY----------------GTK-RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ--SGTVFLG 62 (255)
T ss_pred EEEEEeEEEEE----------------CCE-EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--CcEEEEC
Confidence 58999999998 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLR---LHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. ...++.++|++|+..+++.+|+.||+.++.... .....++.+++++++++.+||.+..++.+ +
T Consensus 63 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 137 (255)
T PRK11231 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----T 137 (255)
T ss_pred CEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----c
Confidence 998632 345567999999999888999999998863210 11112334567889999999988777766 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+
T Consensus 138 ~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~G~ 215 (255)
T PRK11231 138 DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDLN-QASRYCDHLVVLANGH 215 (255)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCHH-HHHHhcCEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999875 4899999999998 5889999999999999
Q ss_pred EEEEcChhHH
Q 044112 252 VVHHGSLDLL 261 (610)
Q Consensus 252 iv~~g~~~~~ 261 (610)
++..|++++.
T Consensus 216 i~~~~~~~~~ 225 (255)
T PRK11231 216 VMAQGTPEEV 225 (255)
T ss_pred EEEEcCHHHh
Confidence 9999988765
No 128
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-44 Score=365.61 Aligned_cols=222 Identities=25% Similarity=0.424 Sum_probs=191.5
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++|+++.+.. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.
T Consensus 5 ~~~l~~~nl~~~~~~--------------~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~ 67 (271)
T PRK13632 5 SVMIKVENVSFSYPN--------------SEN-NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ--SGEIK 67 (271)
T ss_pred ceEEEEEeEEEEcCC--------------CCc-cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEE
Confidence 457999999999820 224 6999999999999999999999999999999999999876 99999
Q ss_pred ECCEeCCh---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 96 VNEQPMNI---TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 96 ~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
++|+++.. ..+++.++|++|++. .++.+||+||+.+..... ....++.+++++++++.+||.+..++.+ +
T Consensus 68 ~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 141 (271)
T PRK13632 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK-KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----Q 141 (271)
T ss_pred ECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----c
Confidence 99998753 345678999999974 677789999999875432 1233445567899999999998888776 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++.++|||+++|+++. + ..+|++++|++|+
T Consensus 142 ~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~ 219 (271)
T PRK13632 142 NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGK 219 (271)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999976546899999999974 5 4799999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
++..|+++++.
T Consensus 220 i~~~g~~~~~~ 230 (271)
T PRK13632 220 LIAQGKPKEIL 230 (271)
T ss_pred EEEecCHHHHh
Confidence 99999987754
No 129
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=4.2e-44 Score=354.68 Aligned_cols=207 Identities=35% Similarity=0.533 Sum_probs=177.0
Q ss_pred EEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCE
Q 044112 20 RTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ 99 (610)
Q Consensus 20 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~ 99 (610)
+++|+++++.. ..+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+
T Consensus 1 ~~~~l~~~~~~--------------~~~-~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~ 63 (211)
T cd03225 1 ELKNLSFSYPD--------------GAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT--SGEVLVDGK 63 (211)
T ss_pred CceeEEEecCC--------------CCe-eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCE
Confidence 36788888820 114 6999999999999999999999999999999999999876 999999999
Q ss_pred eCCh---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 100 PMNI---TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 100 ~~~~---~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
++.. ..+++.++|++|++. .++.+|++||+.+..... ....++.+++++++++.+||.+..++.+ ..|||
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 137 (211)
T cd03225 64 DLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSG 137 (211)
T ss_pred EcccCCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCH
Confidence 8742 345678999999975 366789999998875432 1223344567889999999988777766 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.++||++++|++|+
T Consensus 138 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 138 GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999764 899999999997 5788899999999985
No 130
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-44 Score=360.65 Aligned_cols=214 Identities=34% Similarity=0.498 Sum_probs=186.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+
T Consensus 2 ~~l~~~~l~~~~----------------~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~ 62 (241)
T PRK14250 2 NEIEFKEVSYSS----------------FGK-EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT--EGSILI 62 (241)
T ss_pred ceEEEEeEEEEe----------------CCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEE
Confidence 468999999998 334 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSRG 172 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 172 (610)
+|+++.. ...++.++|++|++.+++ .||+||+.+....+ . ...+++.++++.+||. +..++.+ ..
T Consensus 63 ~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 131 (241)
T PRK14250 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--EKNVDVEYYLSIVGLNKEYATRDV-----KN 131 (241)
T ss_pred CCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--cHHHHHHHHHHHcCCCHHHhhCCc-----cc
Confidence 9998642 345678999999998887 69999998764322 1 1235678899999996 4566554 69
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|++
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i 210 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGIL 210 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999997655899999999998 47889999999999999
Q ss_pred EEEcChhHH
Q 044112 253 VHHGSLDLL 261 (610)
Q Consensus 253 v~~g~~~~~ 261 (610)
+..|+++++
T Consensus 211 ~~~~~~~~~ 219 (241)
T PRK14250 211 VEYAKTYDF 219 (241)
T ss_pred EEeCCHHHH
Confidence 999998765
No 131
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-44 Score=362.31 Aligned_cols=228 Identities=27% Similarity=0.448 Sum_probs=197.2
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC-C-C-CceeEEE
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP-L-R-RVSGSVL 95 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~-~-~-~~~G~I~ 95 (610)
|+++||+.++... .+.. .+++||||++++||++||+|+|||||||+.++|.|+++ + . ..+|+|.
T Consensus 2 L~v~nL~v~f~~~------------~g~v-~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~ 68 (316)
T COG0444 2 LEVKNLSVSFPTD------------AGVV-KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL 68 (316)
T ss_pred ceEeeeEEEEecC------------CccE-EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE
Confidence 7899999999521 1223 79999999999999999999999999999999999997 3 2 4679999
Q ss_pred ECCEeCC---hh---ccc-ceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCcccccccc
Q 044112 96 VNEQPMN---IT---QFR-RISGYVTQDE--VLFPLLTVKETLMYSARLRLHV-GLNRAKARVSELLKELGLEHVANVRI 165 (610)
Q Consensus 96 ~~g~~~~---~~---~~~-~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~v 165 (610)
++|+++. .+ ++| +.|+|++||+ .|.|.+||.+.+.-..+.+... .+++.++++.++|+.+||.+... +
T Consensus 69 f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~--~ 146 (316)
T COG0444 69 FDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPER--R 146 (316)
T ss_pred ECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHH--H
Confidence 9999763 22 233 5799999997 5899999999999888765443 35667889999999999986422 1
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
-+.+|.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.++.|.++|++|||+.. +.++||||+
T Consensus 147 ~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~ 225 (316)
T COG0444 147 LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVA 225 (316)
T ss_pred HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEE
Confidence 2457799999999999999999999999999999999999999999999999998899999999999985 899999999
Q ss_pred EeeCCeEEEEcChhHHH
Q 044112 246 LLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~~ 262 (610)
||..|++|+.|+++++.
T Consensus 226 VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 226 VMYAGRIVEEGPVEEIF 242 (316)
T ss_pred EEECcEEEEeCCHHHHh
Confidence 99999999999998764
No 132
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-43 Score=357.20 Aligned_cols=217 Identities=26% Similarity=0.409 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|. .+ . .|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++
T Consensus 1 ~l~~~~l~~~~~----------------~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 59 (232)
T PRK10771 1 MLKLTDITWLYH----------------HL-P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLN 59 (232)
T ss_pred CeEEEEEEEEEC----------------Cc-c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEC
Confidence 378999999982 22 2 3899999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.++|++|++.+++.+|+.||+.+....... ..+..+++++++++.+||++..++.+ +.||||
T Consensus 60 g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 133 (232)
T PRK10771 60 GQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLK-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGG 133 (232)
T ss_pred CeecCcCChhhccEEEEecccccccCCcHHHHHhcccccccC-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHH
Confidence 998743 22346799999999999999999999876422111 12234567899999999998888776 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||++||++++.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+++|++++|++|++++.|
T Consensus 134 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 134 QRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999987656899999999998 478899999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
++++..
T Consensus 213 ~~~~~~ 218 (232)
T PRK10771 213 PTDELL 218 (232)
T ss_pred CHHHHH
Confidence 987654
No 133
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.1e-43 Score=364.56 Aligned_cols=229 Identities=25% Similarity=0.416 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|..+.. ....+.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~~~-~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~--~G~i~~~ 73 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG-------WFRRQTV-EAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLID 73 (267)
T ss_pred eEEEeceEEEecCCCC-------ccccccc-ceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CCEEEEC
Confidence 5899999999931000 0001123 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 171 (610)
|+++.. ...++.++|++|++. +++.+||.|++.+..+.+......+..++++++++.+||. +..++.+ .
T Consensus 74 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 148 (267)
T PRK15112 74 DHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYP-----H 148 (267)
T ss_pred CEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCc-----h
Confidence 998742 223457999999975 6788899999998765432223334456789999999994 5566555 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++|+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~ 227 (267)
T PRK15112 149 MLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGE 227 (267)
T ss_pred hcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999997656899999999998 5888999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
++..|+++++.
T Consensus 228 i~~~~~~~~~~ 238 (267)
T PRK15112 228 VVERGSTADVL 238 (267)
T ss_pred EEecCCHHHHh
Confidence 99999887653
No 134
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=360.38 Aligned_cols=223 Identities=26% Similarity=0.423 Sum_probs=185.2
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--C-CCceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--L-RRVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~-~~~~G~ 93 (610)
..|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+.+ + .+.+|+
T Consensus 5 ~~l~~~~l~~~~----------------~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 67 (253)
T PRK14242 5 PKMEARGLSFFY----------------GDF-QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGE 67 (253)
T ss_pred cEEEEeeeEEEE----------------CCe-eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceE
Confidence 358999999998 334 69999999999999999999999999999999999864 1 124899
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 168 (610)
|.++|+++.. ...++.++|++|++.+++ .||+||+.++...+.....+..+++++++++.+|+.+...... +.
T Consensus 68 i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 145 (253)
T PRK14242 68 ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL-HE 145 (253)
T ss_pred EEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHh-hC
Confidence 9999998742 234678999999998888 5999999987644321123344567889999999854221111 12
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|++++|+
T Consensus 146 ~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tvii~tH~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14242 146 SALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-A-RYTIIIVTHNMQ-QAARVSDVTAFFY 222 (253)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCeEEEEEecHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999985 4 689999999998 4789999999999
Q ss_pred CCeEEEEcChhHH
Q 044112 249 KGTVVHHGSLDLL 261 (610)
Q Consensus 249 ~G~iv~~g~~~~~ 261 (610)
+|+++..|+++++
T Consensus 223 ~G~i~~~g~~~~~ 235 (253)
T PRK14242 223 MGKLIEVGPTEQI 235 (253)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999988765
No 135
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=8.8e-44 Score=364.19 Aligned_cols=221 Identities=31% Similarity=0.433 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVLV 96 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~~ 96 (610)
+|+++||++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +.+|+|.+
T Consensus 4 ~l~~~nl~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~ 66 (262)
T PRK09984 4 IIRVEKLAKTF----------------NQH-QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIEL 66 (262)
T ss_pred EEEEeeEEEEe----------------CCe-EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEE
Confidence 58999999998 334 7999999999999999999999999999999999999875 24699999
Q ss_pred CCEeCCh--------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHcCCcccc
Q 044112 97 NEQPMNI--------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL-------HVGLNRAKARVSELLKELGLEHVA 161 (610)
Q Consensus 97 ~g~~~~~--------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~-------~~~~~~~~~~v~~~l~~lgL~~~~ 161 (610)
+|+++.. ...++.++|++|++.+++.+||+||+.+...... ....++.+++++++++.+||.+..
T Consensus 67 ~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 146 (262)
T PRK09984 67 LGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFA 146 (262)
T ss_pred CCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 9988632 2345679999999999999999999987642110 011233456789999999998877
Q ss_pred cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 162 NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 162 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
++.+ ..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++
T Consensus 147 ~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~ 220 (262)
T PRK09984 147 HQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYC 220 (262)
T ss_pred hCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhC
Confidence 8776 5899999999999999999999999999999999999999999999997656899999999997 478999
Q ss_pred ceEEEeeCCeEEEEcChhHH
Q 044112 242 DQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 242 D~v~~L~~G~iv~~g~~~~~ 261 (610)
|++++|++|++++.|++++.
T Consensus 221 d~i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 221 ERIVALRQGHVFYDGSSQQF 240 (262)
T ss_pred CEEEEEECCEEEEeCCHHHh
Confidence 99999999999999998763
No 136
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.3e-41 Score=415.73 Aligned_cols=224 Identities=30% Similarity=0.458 Sum_probs=199.7
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++||++.+.. +++ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.
T Consensus 926 ~~~L~I~nLsK~y~~--------------~~k-~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt--sG~I~ 988 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP--------------SGR-PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT--SGTVL 988 (2272)
T ss_pred CceEEEEeEEEEecC--------------CCc-eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC--ceEEE
Confidence 347999999999821 234 7999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 96 VNEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 96 ~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
++|+++.. ...++.+||++|++.+++.+||+||+.+.++++. .+.++.+++++++++.+||++.+++.+ ++|
T Consensus 989 i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg-~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 1062 (2272)
T TIGR01257 989 VGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG-RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDL 1062 (2272)
T ss_pred ECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhC
Confidence 99998753 3456789999999999999999999999887642 233455678999999999999888877 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
||||||||+||+||+.+|++++|||||+|||+.+++.++++|++++ + |+|||++||+++ ++..++||+++|++|+++
T Consensus 1063 SGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~-g~TIIltTHdmd-ea~~laDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1063 SGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-S-GRTIIMSTHHMD-EADLLGDRIAIISQGRLY 1139 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-C-CCEEEEEECCHH-HHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999984 4 899999999998 588899999999999999
Q ss_pred EEcChhHHHHHH
Q 044112 254 HHGSLDLLEHRL 265 (610)
Q Consensus 254 ~~g~~~~~~~~~ 265 (610)
..|+++++.+.+
T Consensus 1140 ~~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1140 CSGTPLFLKNCF 1151 (2272)
T ss_pred EecCHHHHHHhc
Confidence 999999887654
No 137
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=9.9e-44 Score=359.45 Aligned_cols=219 Identities=27% Similarity=0.344 Sum_probs=184.4
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC--CCCCceeEEEE
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI--PLRRVSGSVLV 96 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~--~~~~~~G~I~~ 96 (610)
|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+. +|+ +|+|.+
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~--~G~i~~ 61 (243)
T TIGR01978 1 LKIKDLHVSV----------------EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT--SGTILF 61 (243)
T ss_pred CeEeeEEEEE----------------CCE-EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC--cceEEE
Confidence 4689999998 334 6999999999999999999999999999999999995 444 999999
Q ss_pred CCEeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHcCCc-ccccccc
Q 044112 97 NEQPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLH------VGLNRAKARVSELLKELGLE-HVANVRI 165 (610)
Q Consensus 97 ~g~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~------~~~~~~~~~v~~~l~~lgL~-~~~~~~v 165 (610)
+|+++.. .. .+..++|++|++.+++.+|++|++.+....... ...++..++++++++.+||. +..++.+
T Consensus 62 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 141 (243)
T TIGR01978 62 KGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSV 141 (243)
T ss_pred CCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccccc
Confidence 9998643 22 234589999999999999999999886543211 11223356788999999997 4566655
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cceE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL-FDQI 244 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~-~D~v 244 (610)
+ .+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+... +|++
T Consensus 142 ~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~~-~~~~~~~d~i 215 (243)
T TIGR01978 142 N----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQR-LLNYIKPDYV 215 (243)
T ss_pred c----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecHH-HHHhhcCCeE
Confidence 2 25999999999999999999999999999999999999999999999975 5899999999997 47777 8999
Q ss_pred EEeeCCeEEEEcChhHHH
Q 044112 245 LLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~~ 262 (610)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEeCCEEEEecCHHHhc
Confidence 999999999999987544
No 138
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-43 Score=362.72 Aligned_cols=231 Identities=27% Similarity=0.413 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++.. ..+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++
T Consensus 7 ~l~i~~l~~~~~~--------------~~~-~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~ 69 (269)
T PRK13648 7 IIVFKNVSFQYQS--------------DAS-FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYN 69 (269)
T ss_pred eEEEEEEEEEcCC--------------CCC-cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEEC
Confidence 5899999999831 123 5899999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++|++|++. +++..|+++|+.+..... ....++..++++++++.+|+.+..++.+ +.|
T Consensus 70 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 143 (269)
T PRK13648 70 NQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERADYEP-----NAL 143 (269)
T ss_pred CEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccC
Confidence 998742 345678999999974 677789999998875432 1233444567889999999988777765 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|+++
T Consensus 144 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~ 221 (269)
T PRK13648 144 SGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVY 221 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999876558999999999974 65 49999999999999
Q ss_pred EEcChhHHHH---HHHHcCCCCC
Q 044112 254 HHGSLDLLEH---RLRIAGHSIP 273 (610)
Q Consensus 254 ~~g~~~~~~~---~~~~~g~~~p 273 (610)
+.|+++++.+ .+...++++|
T Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 222 KEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EecCHHHHhcCHHHHHhcCCCCC
Confidence 9999887632 3444454444
No 139
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.1e-44 Score=356.26 Aligned_cols=207 Identities=36% Similarity=0.586 Sum_probs=176.5
Q ss_pred EEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe
Q 044112 21 TKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100 (610)
Q Consensus 21 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~ 100 (610)
++||+++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++
T Consensus 2 ~~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~ 62 (213)
T cd03235 2 VEDLTVSY----------------GGH-PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT--SGSIRVFGKP 62 (213)
T ss_pred cccceeEE----------------CCE-EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECCcc
Confidence 57888888 334 6999999999999999999999999999999999999876 9999999987
Q ss_pred CChhcccceEEEEccCCCCC--CCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 101 MNITQFRRISGYVTQDEVLF--PLLTVKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 101 ~~~~~~~~~~~yv~Q~~~l~--~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+. ..++.++|++|++.+. ..+||+||+.+....+.. ...++.+++++++++.+|+.+..++.+ ..|||
T Consensus 63 ~~--~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 135 (213)
T cd03235 63 LE--KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSG 135 (213)
T ss_pred HH--HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCH
Confidence 63 3567799999998763 347999999886432110 112334567899999999988777766 58999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++| +++.
T Consensus 136 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 136 GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcCEEEEEcCc-Eeec
Confidence 999999999999999999999999999999999999999999975 5899999999998 478899999999876 5554
Q ss_pred c
Q 044112 256 G 256 (610)
Q Consensus 256 g 256 (610)
|
T Consensus 213 g 213 (213)
T cd03235 213 G 213 (213)
T ss_pred C
Confidence 4
No 140
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=363.47 Aligned_cols=219 Identities=31% Similarity=0.490 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.+. +.+ .+++|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++
T Consensus 1 ~l~~~~l~~~~~---------------~~~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~ 62 (275)
T PRK13639 1 ILETRDLKYSYP---------------DGT-EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT--SGEVLIK 62 (275)
T ss_pred CEEEEEEEEEeC---------------CCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEEC
Confidence 378999999982 223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-----hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI-----TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~-----~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|++++. ...++.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++.+ +
T Consensus 63 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 136 (275)
T PRK13639 63 GEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFENKPP-----H 136 (275)
T ss_pred CEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhhcCCh-----h
Confidence 998741 234678999999963 333479999998864322 2234445567899999999998888776 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++++|||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.++||++++|++|+
T Consensus 137 ~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~~-~~~~~~d~i~~l~~G~ 214 (275)
T PRK13639 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDVD-LVPVYADKVYVMSDGK 214 (275)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999975 4899999999997 4788999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
++..|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (275)
T PRK13639 215 IIKEGTPKEVF 225 (275)
T ss_pred EEEeCCHHHHh
Confidence 99999998764
No 141
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-43 Score=365.21 Aligned_cols=224 Identities=27% Similarity=0.392 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++|... .+.+.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~~-~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~--~G~i~i~ 70 (280)
T PRK13633 4 MIKCKNVSYKYESN----------EESTEK-LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS--EGKVYVD 70 (280)
T ss_pred eEEEeeeEEEcCCC----------CCCCCc-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEC
Confidence 68999999999311 000124 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh----hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 98 EQPMNI----TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 98 g~~~~~----~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
|+++.. ...++.+||++|++. .+...||.||+.|+.... ..+..+.+++++++++.+||++..++.+ +.
T Consensus 71 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (280)
T PRK13633 71 GLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL-GIPPEEIRERVDESLKKVGMYEYRRHAP-----HL 144 (280)
T ss_pred CEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc-CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----cc
Confidence 998742 245678999999974 233469999999876532 2234455677899999999998888776 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +.. +|++++|++|++
T Consensus 145 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i 222 (280)
T PRK13633 145 LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKV 222 (280)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999976568999999999984 554 999999999999
Q ss_pred EEEcChhHHH
Q 044112 253 VHHGSLDLLE 262 (610)
Q Consensus 253 v~~g~~~~~~ 262 (610)
+..|+++++.
T Consensus 223 ~~~g~~~~~~ 232 (280)
T PRK13633 223 VMEGTPKEIF 232 (280)
T ss_pred EEecCHHHHh
Confidence 9999998764
No 142
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.9e-43 Score=354.24 Aligned_cols=216 Identities=30% Similarity=0.419 Sum_probs=183.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||++++.. ..... .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+
T Consensus 5 ~~l~~~~l~~~~~~------------~~~~~-~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~--~G~i~~ 69 (228)
T PRK10584 5 NIVEVHHLKKSVGQ------------GEHEL-SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSL 69 (228)
T ss_pred ceEEEeeeEEEccC------------CCcce-EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CeeEEE
Confidence 36899999999831 00112 5999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh---hc---c-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 97 NEQPMNI---TQ---F-RRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 97 ~g~~~~~---~~---~-~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
+|+++.. .. . ++.++|++|++.+++.+||+||+.+....+. ...++.+++++++++.+||.+..++.+
T Consensus 70 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 144 (228)
T PRK10584 70 VGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG-ESSRQSRNGAKALLEQLGLGKRLDHLP---- 144 (228)
T ss_pred CCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHhHhhCCh----
Confidence 9998742 11 2 3579999999999999999999998754321 223445677899999999988777766
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+++ .+ +.+|++++|++
T Consensus 145 -~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~ 221 (228)
T PRK10584 145 -AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN 221 (228)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 5899999999999999999999999999999999999999999999997656899999999997 35 56999999999
Q ss_pred CeEEEE
Q 044112 250 GTVVHH 255 (610)
Q Consensus 250 G~iv~~ 255 (610)
|++++.
T Consensus 222 g~i~~~ 227 (228)
T PRK10584 222 GQLQEE 227 (228)
T ss_pred CEEEec
Confidence 998753
No 143
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=360.71 Aligned_cols=220 Identities=28% Similarity=0.420 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
.|+++|++++| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|. +.+|+|
T Consensus 4 ~l~i~~v~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I 66 (258)
T PRK14241 4 RIDVKDLNIYY----------------GSF-HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV 66 (258)
T ss_pred cEEEeeEEEEE----------------CCE-eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE
Confidence 58999999998 334 6999999999999999999999999999999999998742 249999
Q ss_pred EECCEeCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccccccc
Q 044112 95 LVNEQPMN-----ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVRI 165 (610)
Q Consensus 95 ~~~g~~~~-----~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v 165 (610)
.++|+++. ....++.++|++|++.+++.+||+||+.++...+.....++.+++++++++.+||. +..++.+
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 146 (258)
T PRK14241 67 LLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG 146 (258)
T ss_pred EECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc
Confidence 99999863 12456789999999999999999999998765432112344556788999999984 3344444
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|+++
T Consensus 147 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tviivsH~~~-~~~~~~d~i~ 218 (258)
T PRK14241 147 -----GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELK-Q-DYTIVIVTHNMQ-QAARVSDQTA 218 (258)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhCCEEE
Confidence 6999999999999999999999999999999999999999999999985 3 589999999997 4789999999
Q ss_pred Eee------CCeEEEEcChhHHH
Q 044112 246 LLS------KGTVVHHGSLDLLE 262 (610)
Q Consensus 246 ~L~------~G~iv~~g~~~~~~ 262 (610)
+|+ +|++++.|+++++.
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEecccCCCCceEEecCCHHHHH
Confidence 997 79999999988753
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-43 Score=361.29 Aligned_cols=223 Identities=25% Similarity=0.402 Sum_probs=188.4
Q ss_pred CCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--CC-Cc
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--LR-RV 90 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~-~~ 90 (610)
.+...|+++|+++.| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.
T Consensus 9 ~~~~~l~~~~l~~~~----------------~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~ 71 (260)
T PRK10744 9 TAPSKIQVRNLNFYY----------------GKF-HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRA 71 (260)
T ss_pred CCCceEEEEEEEEEe----------------CCe-EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCc
Confidence 344569999999998 334 69999999999999999999999999999999999986 21 34
Q ss_pred eeEEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccc
Q 044112 91 SGSVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVA 161 (610)
Q Consensus 91 ~G~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 161 (610)
+|+|.++|+++.. ..+++.++|++|++.+++ .||+||+.+....+...+.++.+++++++++.+++. +..
T Consensus 72 ~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (260)
T PRK10744 72 EGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKL 150 (260)
T ss_pred ceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Confidence 8999999998742 245678999999998887 799999998764321223344456789999999984 334
Q ss_pred cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 162 NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 162 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
++.+ ..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++
T Consensus 151 ~~~~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~~~~ 222 (260)
T PRK10744 151 HQSG-----YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-Q-DYTVVIVTHNMQ-QAARCS 222 (260)
T ss_pred hcCC-----CCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhC
Confidence 4443 6999999999999999999999999999999999999999999999985 3 689999999997 478899
Q ss_pred ceEEEeeCCeEEEEcChhHHH
Q 044112 242 DQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 242 D~v~~L~~G~iv~~g~~~~~~ 262 (610)
|++++|++|+++..|+++++.
T Consensus 223 d~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 223 DYTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred CEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999987653
No 145
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=377.54 Aligned_cols=210 Identities=31% Similarity=0.484 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|++ ||+++| +.+ . + |+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++
T Consensus 1 ~l~~-~l~k~~----------------~~~-~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~ 58 (352)
T PRK11144 1 MLEL-NFKQQL----------------GDL-C-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ--KGRIVLN 58 (352)
T ss_pred CeEE-EEEEEe----------------CCE-E-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 3667 899888 333 3 2 899999999999999999999999999999999876 9999999
Q ss_pred CEeCCh-------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 98 EQPMNI-------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
|+++.. ...++.++|++|+..+++.+||+||+.++.. ...+++++++++.+||.+..++.+
T Consensus 59 g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~~~~~~~~~l~~~gl~~~~~~~~----- 126 (352)
T PRK11144 59 GRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA-------KSMVAQFDKIVALLGIEPLLDRYP----- 126 (352)
T ss_pred CEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh-------hhhHHHHHHHHHHcCCchhhhCCc-----
Confidence 998642 2346789999999999999999999998642 123457889999999998888776
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
++|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|
T Consensus 127 ~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G 205 (352)
T PRK11144 127 GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQG 205 (352)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCC
Confidence 6999999999999999999999999999999999999999999999998766899999999997 588999999999999
Q ss_pred eEEEEcChhHHH
Q 044112 251 TVVHHGSLDLLE 262 (610)
Q Consensus 251 ~iv~~g~~~~~~ 262 (610)
+++..|+++++.
T Consensus 206 ~i~~~g~~~~i~ 217 (352)
T PRK11144 206 KVKAFGPLEEVW 217 (352)
T ss_pred EEEEecCHHHHH
Confidence 999999998764
No 146
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.5e-43 Score=351.50 Aligned_cols=211 Identities=28% Similarity=0.446 Sum_probs=183.1
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
++++||++.+ + .+++|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|
T Consensus 1 ~~~~~l~~~~----------------~---~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 59 (213)
T TIGR01277 1 LALDKVRYEY----------------E---HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA--SGSIKVND 59 (213)
T ss_pred CeEEeeeEEe----------------C---CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEECC
Confidence 4689999988 2 2467999999999999999999999999999999999877 99999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
+++.. ...++.++|++|++.+++.+|++||+.+....... ...+.+++++++++.+||.+..++.+ +.|||||
T Consensus 60 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (213)
T TIGR01277 60 QSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQ 133 (213)
T ss_pred EEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHH
Confidence 98743 23567799999999999999999999876432211 12233567889999999988777766 6999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+
T Consensus 134 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 134 RQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999999999999997655899999999997 4778999999999999998875
No 147
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=367.05 Aligned_cols=223 Identities=24% Similarity=0.395 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|++++|.. +..... .+|+|+|+++++||+++|+||||||||||+|+|+|+++|. +|+|.++
T Consensus 6 ~l~i~nl~~~~~~-----------~~~~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 71 (289)
T PRK13645 6 DIILDNVSYTYAK-----------KTPFEF-KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE--TGQTIVG 71 (289)
T ss_pred eEEEEEEEEEeCC-----------CCcccc-ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEEC
Confidence 4899999999831 000012 5999999999999999999999999999999999999876 9999999
Q ss_pred CEeCC--------hhcccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-cccccccc
Q 044112 98 EQPMN--------ITQFRRISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIG 166 (610)
Q Consensus 98 g~~~~--------~~~~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 166 (610)
|+++. ...+++.++|++|++. +++ .||+||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 72 g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~ll~~~~L~~~~~~~~~- 148 (289)
T PRK13645 72 DYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL-GENKQEAYKKVPELLKLVQLPEDYVKRSP- 148 (289)
T ss_pred CEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCChhHhcCCh-
Confidence 99863 1235677999999973 444 59999999875432 223344456788999999994 5667665
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++
T Consensus 149 ----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~ 223 (289)
T PRK13645 149 ----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIV 223 (289)
T ss_pred ----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEE
Confidence 6999999999999999999999999999999999999999999999997656899999999997 58899999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+++++.
T Consensus 224 l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 224 MHEGKVISIGSPFEIF 239 (289)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
No 148
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-43 Score=364.35 Aligned_cols=223 Identities=22% Similarity=0.340 Sum_probs=191.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCC-ceeEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRR-VSGSVL 95 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~-~~G~I~ 95 (610)
.+|+++|+++.+.. ..+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|.. .+|+|.
T Consensus 4 ~~l~i~~l~~~~~~--------------~~~-~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~ 68 (282)
T PRK13640 4 NIVEFKHVSFTYPD--------------SKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKIT 68 (282)
T ss_pred ceEEEEEEEEEcCC--------------CCc-cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEE
Confidence 36999999999831 123 69999999999999999999999999999999999998751 129999
Q ss_pred ECCEeCCh---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 96 VNEQPMNI---TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 96 ~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
++|+++.. ...++.+||++|++. .++..||+||+.+..... ..+.++.+++++++++.+||.+..++.+ +
T Consensus 69 i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (282)
T PRK13640 69 VDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-AVPRPEMIKIVRDVLADVGMLDYIDSEP-----A 142 (282)
T ss_pred ECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCChhHhcCCc-----c
Confidence 99998753 345678999999974 677789999999875432 2234455678999999999998877766 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++. + ..||++++|++|+
T Consensus 143 ~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~ 220 (282)
T PRK13640 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGK 220 (282)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999976568999999999974 5 5799999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|+++++.
T Consensus 221 i~~~g~~~~~~ 231 (282)
T PRK13640 221 LLAQGSPVEIF 231 (282)
T ss_pred EEEeCCHHHHh
Confidence 99999998764
No 149
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-43 Score=354.73 Aligned_cols=217 Identities=32% Similarity=0.489 Sum_probs=190.8
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+++|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~--~G~i~~~g 61 (232)
T cd03300 1 IELENVSKFY----------------GGF-VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDG 61 (232)
T ss_pred CEEEeEEEEe----------------CCe-eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECC
Confidence 4689999998 334 7999999999999999999999999999999999999876 89999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
+++.. ...++.++|++|++.+++.+|++||+.+....+. ......+++++++++.+||.+..++.+ ..|||||
T Consensus 62 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~ 135 (232)
T cd03300 62 KDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK-LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQ 135 (232)
T ss_pred EEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHH
Confidence 98753 2235679999999999999999999998765432 223344567889999999998887766 6999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+.+|++++|++|++++.|+
T Consensus 136 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~ 214 (232)
T cd03300 136 QQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGT 214 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999997655899999999997 4789999999999999999998
Q ss_pred hhHH
Q 044112 258 LDLL 261 (610)
Q Consensus 258 ~~~~ 261 (610)
.++.
T Consensus 215 ~~~~ 218 (232)
T cd03300 215 PEEI 218 (232)
T ss_pred HHHH
Confidence 7655
No 150
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.8e-43 Score=376.61 Aligned_cols=199 Identities=29% Similarity=0.493 Sum_probs=178.4
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-------hcccceEEEEccCCCCCCCCCH
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-------TQFRRISGYVTQDEVLFPLLTV 125 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTv 125 (610)
|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~--~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 999999999999999999999999999999999876 9999999998742 1345679999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044112 126 KETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDS 205 (610)
Q Consensus 126 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 205 (610)
+||+.++.... ...+.+++++++++.+||.+..++.+ ++|||||||||+||+||+.+|++|+|||||+|||+
T Consensus 93 ~enl~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~ 164 (354)
T TIGR02142 93 RGNLRYGMKRA---RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164 (354)
T ss_pred HHHHHHHhhcc---ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH
Confidence 99999876422 22334567899999999998888776 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 206 ASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 206 ~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 165 ~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 165 PRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 99999999999998666899999999998 588999999999999999999988764
No 151
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.5e-43 Score=353.80 Aligned_cols=210 Identities=27% Similarity=0.482 Sum_probs=185.1
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|. +|+|.++|
T Consensus 1 l~l~~v~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~ 61 (223)
T TIGR03740 1 LETKNLSKRF----------------GKQ-TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT--SGEIIFDG 61 (223)
T ss_pred CEEEeEEEEE----------------CCE-EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECC
Confidence 4689999988 334 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHh
Q 044112 99 QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEK 178 (610)
Q Consensus 99 ~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 178 (610)
+++.... ++.++|++|++.+++.+|++||+.+....+. .. ++++.++++.+||++..++.+ ..||||||
T Consensus 62 ~~~~~~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 130 (223)
T TIGR03740 62 HPWTRKD-LHKIGSLIESPPLYENLTARENLKVHTTLLG-LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMK 130 (223)
T ss_pred Eeccccc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC-CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHH
Confidence 9875332 3579999999999999999999988765431 11 346788999999998887766 59999999
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcCh
Q 044112 179 RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSL 258 (610)
Q Consensus 179 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~ 258 (610)
||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.+|++++|++|++++.|++
T Consensus 131 ~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 131 QRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred HHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecCh
Confidence 999999999999999999999999999999999999999975 5899999999998 47889999999999999999987
Q ss_pred hH
Q 044112 259 DL 260 (610)
Q Consensus 259 ~~ 260 (610)
++
T Consensus 209 ~~ 210 (223)
T TIGR03740 209 NK 210 (223)
T ss_pred hh
Confidence 53
No 152
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.5e-43 Score=377.72 Aligned_cols=234 Identities=27% Similarity=0.397 Sum_probs=194.8
Q ss_pred EEEEeEEEEEecccccccccc--c------ccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCc
Q 044112 19 IRTKKLTYRSFRGVDEFNWFC--S------WKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRV 90 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~--~------~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~ 90 (610)
|+++||++-+-...+...... + .++.+.. .+|+|+||++++||+++|+||||||||||+++|+|+++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~-~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~-- 77 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLV-VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS-- 77 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCE-EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--
Confidence 578999888732221110100 0 1122334 7999999999999999999999999999999999999876
Q ss_pred eeEEEECCE----eCC---hh---ccc-ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc
Q 044112 91 SGSVLVNEQ----PMN---IT---QFR-RISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH 159 (610)
Q Consensus 91 ~G~I~~~g~----~~~---~~---~~~-~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 159 (610)
+|+|.++|+ ++. .. +.+ +.++||+|++.++|.+||+||+.++...+ ..+.++.+++++++++.+||.+
T Consensus 78 ~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 78 RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQ 156 (382)
T ss_pred CcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCch
Confidence 999999997 332 11 122 57999999999999999999999986543 2234555678899999999998
Q ss_pred cccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH
Q 044112 160 VANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE 239 (610)
Q Consensus 160 ~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~ 239 (610)
..++.+ .+|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++.|+|||++|||++ ++.+
T Consensus 157 ~~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~ 230 (382)
T TIGR03415 157 WADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALK 230 (382)
T ss_pred hhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence 888776 5899999999999999999999999999999999999999999999998766899999999998 5889
Q ss_pred hcceEEEeeCCeEEEEcChhHHH
Q 044112 240 LFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 240 ~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
++|++++|++|+++..|+++++.
T Consensus 231 l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 231 IGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998764
No 153
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.6e-43 Score=354.49 Aligned_cols=218 Identities=33% Similarity=0.483 Sum_probs=190.8
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
++++|++++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|++++. +|+|.++|
T Consensus 1 i~i~~l~~~~----------------~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~i~g 61 (237)
T TIGR00968 1 IEIANISKRF----------------GSF-QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNG 61 (237)
T ss_pred CEEEEEEEEE----------------CCe-eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEECC
Confidence 4689999998 334 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
.++.. ...++.++|++|++.+++.+|++||+.+....+. .......+.++++++.+++.+..++.+ +.|||||
T Consensus 62 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~ 135 (237)
T TIGR00968 62 QDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK-HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQ 135 (237)
T ss_pred EEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC-CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHH
Confidence 98753 2335679999999999999999999998765431 223334567889999999988777766 5899999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
+||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|++|++++.|+
T Consensus 136 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~ 214 (237)
T TIGR00968 136 RQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGS 214 (237)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999987655899999999997 4789999999999999999999
Q ss_pred hhHHH
Q 044112 258 LDLLE 262 (610)
Q Consensus 258 ~~~~~ 262 (610)
.+++.
T Consensus 215 ~~~~~ 219 (237)
T TIGR00968 215 PDEVY 219 (237)
T ss_pred HHHHH
Confidence 87753
No 154
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-43 Score=356.54 Aligned_cols=218 Identities=24% Similarity=0.380 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC-CCceeEEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL-RRVSGSVLV 96 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~-~~~~G~I~~ 96 (610)
+++++|+++.| +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+.++ .+.+|+|.+
T Consensus 2 ~~~~~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~ 64 (246)
T PRK14269 2 IAKTTNLNLFY----------------GKK-QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEI 64 (246)
T ss_pred ceeeeeeEEEE----------------CCE-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEE
Confidence 57899999999 334 799999999999999999999999999999999999753 234999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV-GLNRAKARVSELLKELGLEH----VANVRIGGE 168 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~ 168 (610)
+|+++.. ...++.++|++|++.+++ .||+||+.++...+... ..+..+++++++++.++|.+ ..++.
T Consensus 65 ~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 139 (246)
T PRK14269 65 EGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN---- 139 (246)
T ss_pred CCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCC----
Confidence 9998743 345678999999998887 69999999875443111 12334566889999999953 23433
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+.+|++++|+
T Consensus 140 -~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i~~l~ 215 (246)
T PRK14269 140 -ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-H-NLSMIMVTHNMQ-QGKRVADYTAFFH 215 (246)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-C-CCEEEEEecCHH-HHHhhCcEEEEEE
Confidence 46999999999999999999999999999999999999999999999985 3 789999999997 4788999999999
Q ss_pred CCeEEEEcChhHH
Q 044112 249 KGTVVHHGSLDLL 261 (610)
Q Consensus 249 ~G~iv~~g~~~~~ 261 (610)
+|++++.|++++.
T Consensus 216 ~G~i~~~g~~~~~ 228 (246)
T PRK14269 216 LGELIEFGESKEF 228 (246)
T ss_pred CCEEEEECCHHHH
Confidence 9999999998765
No 155
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.4e-43 Score=359.71 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=187.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++|
T Consensus 2 l~~~~l~~~~----------------~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g 62 (256)
T TIGR03873 2 LRLSRVSWSA----------------GGR-LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD--AGTVDLAG 62 (256)
T ss_pred ceEEeEEEEE----------------CCE-EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CCEEEECC
Confidence 6789999998 334 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhc--C-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLR--L-HVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~--~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
+++.. ...++.++|++|++.+++.+||+||+.++.... . ....++..+++.++++.+|+.+..++.+ ..
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 137 (256)
T TIGR03873 63 VDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----ST 137 (256)
T ss_pred EEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----cc
Confidence 98743 344567999999988888899999998853210 0 1112233457889999999988778776 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||+++ .+.+++|++++|++|++
T Consensus 138 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i 215 (256)
T TIGR03873 138 LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDLN-LAASYCDHVVVLDGGRV 215 (256)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEeCCCE
Confidence 999999999999999999999999999999999999999999999974 5899999999998 47899999999999999
Q ss_pred EEEcChhHH
Q 044112 253 VHHGSLDLL 261 (610)
Q Consensus 253 v~~g~~~~~ 261 (610)
+..|+.++.
T Consensus 216 ~~~g~~~~~ 224 (256)
T TIGR03873 216 VAAGPPREV 224 (256)
T ss_pred EEecCHHHh
Confidence 999998765
No 156
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-43 Score=358.31 Aligned_cols=221 Identities=27% Similarity=0.404 Sum_probs=187.0
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC--C-Ccee
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL--R-RVSG 92 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~--~-~~~G 92 (610)
..+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|++++ . +.+|
T Consensus 10 ~~~l~i~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G 72 (259)
T PRK14274 10 QEVYQINGMNLWY----------------GQH-HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTG 72 (259)
T ss_pred CceEEEeeEEEEE----------------CCe-eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce
Confidence 3469999999998 334 699999999999999999999999999999999999863 1 2489
Q ss_pred EEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----cccc
Q 044112 93 SVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VANV 163 (610)
Q Consensus 93 ~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~ 163 (610)
+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....+.....++.+++++++++.+++.+ ..++
T Consensus 73 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~ 151 (259)
T PRK14274 73 EMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151 (259)
T ss_pred EEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence 99999998742 2456779999999988885 999999987543211123344567888999999854 2344
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
. +++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|+
T Consensus 152 ~-----~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~ 223 (259)
T PRK14274 152 Q-----ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-E-KYTIVIVTHNMQ-QAARVSDQ 223 (259)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEEcCHH-HHHHhCCE
Confidence 4 46999999999999999999999999999999999999999999999985 3 689999999997 58899999
Q ss_pred EEEeeCCeEEEEcChhHHH
Q 044112 244 ILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~~ 262 (610)
+++|++|+++..|+++++.
T Consensus 224 i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 224 TAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999988753
No 157
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-43 Score=370.00 Aligned_cols=226 Identities=21% Similarity=0.273 Sum_probs=188.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC--CceeEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR--RVSGSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~--~~~G~I~ 95 (610)
.|+++||++.|..+ ++.. .+|+|||+++++||+++|+|+||||||||+++|+|++++. +.+|+|.
T Consensus 3 ~L~v~~l~~~y~~~------------~~~~-~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~ 69 (330)
T PRK15093 3 LLDIRNLTIEFKTS------------DGWV-KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMR 69 (330)
T ss_pred eEEEeeeEEEEeCC------------CCCE-EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEE
Confidence 58999999999421 1223 6999999999999999999999999999999999998641 3489999
Q ss_pred ECCEeCCh---hc----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcC--C---CCHHHHHHHHHHHHHHcCCccc-
Q 044112 96 VNEQPMNI---TQ----FRRISGYVTQDEV--LFPLLTVKETLMYSARLRL--H---VGLNRAKARVSELLKELGLEHV- 160 (610)
Q Consensus 96 ~~g~~~~~---~~----~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~--~---~~~~~~~~~v~~~l~~lgL~~~- 160 (610)
++|+++.. .. .++.++||+|++. +.|.+||.|++........ + ...++.++++.++++.+||.+.
T Consensus 70 ~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~ 149 (330)
T PRK15093 70 FDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred ECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH
Confidence 99998742 11 2357999999975 6788999999986533211 1 1113345678999999999753
Q ss_pred --ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHH
Q 044112 161 --ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRIL 238 (610)
Q Consensus 161 --~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~ 238 (610)
.++ .+.+|||||||||+||+||+.+|++|++||||+|||+.++.+++++|+++.++.|.|||++|||++ .+.
T Consensus 150 ~~~~~-----~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~ 223 (330)
T PRK15093 150 DAMRS-----FPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLS 223 (330)
T ss_pred HHHhC-----CchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHH
Confidence 344 347999999999999999999999999999999999999999999999998666899999999998 478
Q ss_pred HhcceEEEeeCCeEEEEcChhHHH
Q 044112 239 ELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 239 ~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
+++|++++|++|++++.|+++++.
T Consensus 224 ~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 224 QWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999987753
No 158
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-43 Score=356.27 Aligned_cols=219 Identities=26% Similarity=0.418 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--CC-CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--LR-RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~-~~~G~I 94 (610)
.|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|+|
T Consensus 4 ~l~~~nl~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 66 (252)
T PRK14256 4 KVKLEQLNVHF----------------GKN-HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI 66 (252)
T ss_pred EEEEEEEEEEe----------------CCe-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE
Confidence 48999999998 334 69999999999999999999999999999999999985 32 248999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VANVRI 165 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 165 (610)
.++|+++.. ..+++.++|++|++.+++.+|++||+.+...........+.+++++++++.+|+.+ ..++.
T Consensus 67 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 145 (252)
T PRK14256 67 LLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSN- 145 (252)
T ss_pred EECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCC-
Confidence 999998742 24567899999999999999999999886543211123344567889999999864 23333
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||+++
T Consensus 146 ----~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~~-~~~~~~d~i~ 218 (252)
T PRK14256 146 ----AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNMQ-QAARVSDYTA 218 (252)
T ss_pred ----cCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCHH-HHHhhCCEEE
Confidence 469999999999999999999999999999999999999999999999963 589999999997 4789999999
Q ss_pred EeeCCeEEEEcChhHH
Q 044112 246 LLSKGTVVHHGSLDLL 261 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~ 261 (610)
+|++|+++..|++++.
T Consensus 219 ~l~~G~i~~~~~~~~~ 234 (252)
T PRK14256 219 FFYMGDLVECGETKKI 234 (252)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998765
No 159
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-43 Score=358.55 Aligned_cols=227 Identities=23% Similarity=0.323 Sum_probs=189.1
Q ss_pred CCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---C
Q 044112 13 RKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---R 89 (610)
Q Consensus 13 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~ 89 (610)
++...+|+++|+++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|. +
T Consensus 15 ~~~~~~l~~~nl~~~~----------------~~~-~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~ 77 (267)
T PRK14237 15 PEEEIALSTKDLHVYY----------------GKK-EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIAR 77 (267)
T ss_pred CCCCeEEEEeeEEEEE----------------CCe-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCC
Confidence 3444579999999998 334 7999999999999999999999999999999999998641 3
Q ss_pred ceeEEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccc
Q 044112 90 VSGSVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVR 164 (610)
Q Consensus 90 ~~G~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 164 (610)
.+|+|.++|+++.. ...++.++|++|++.+++ .||+||+.++.........++.++++.++++.++|.+..+..
T Consensus 78 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~ 156 (267)
T PRK14237 78 VTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDD 156 (267)
T ss_pred cceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhh
Confidence 59999999998742 234678999999998887 599999998754321112334456788999999986422111
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
. +..++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.++||++
T Consensus 157 ~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~~~d~i 232 (267)
T PRK14237 157 L-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-K-NYTIIIVTHNMQ-QAARASDYT 232 (267)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH-HHHHhcCEE
Confidence 1 23447999999999999999999999999999999999999999999999985 3 689999999998 588999999
Q ss_pred EEeeCCeEEEEcChhHH
Q 044112 245 LLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~ 261 (610)
++|++|++++.|+++++
T Consensus 233 ~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14237 233 AFFYLGDLIEYDKTRNI 249 (267)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998875
No 160
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.9e-43 Score=357.88 Aligned_cols=219 Identities=25% Similarity=0.366 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 6 ~l~~~~l~~~~----------------~~~-~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 66 (258)
T PRK11701 6 LLSVRGLTKLY----------------GPR-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD--AGEVHYR 66 (258)
T ss_pred eEEEeeeEEEc----------------CCc-eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEEC
Confidence 58999999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEe-----CCh---hc----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-ccc
Q 044112 98 EQP-----MNI---TQ----FRRISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VAN 162 (610)
Q Consensus 98 g~~-----~~~---~~----~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 162 (610)
|++ +.. .. .++.++|++|++. +++.+|+.||+.+...........+.++++.++++.+++.+ ..+
T Consensus 67 g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 146 (258)
T PRK11701 67 MRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARID 146 (258)
T ss_pred CccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHh
Confidence 987 532 11 2456999999973 67888999999875432111122344567889999999974 566
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+.+ ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||+++ .+.+.+|
T Consensus 147 ~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d 220 (258)
T PRK11701 147 DLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAH 220 (258)
T ss_pred CCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcC
Confidence 655 6999999999999999999999999999999999999999999999987655899999999998 4778999
Q ss_pred eEEEeeCCeEEEEcChhHH
Q 044112 243 QILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~~~ 261 (610)
++++|++|++++.|+++++
T Consensus 221 ~i~~l~~g~i~~~~~~~~~ 239 (258)
T PRK11701 221 RLLVMKQGRVVESGLTDQV 239 (258)
T ss_pred EEEEEECCEEEEeCCHHHH
Confidence 9999999999999998765
No 161
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-43 Score=359.24 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=186.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~ 93 (610)
..|+++||++.+ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.++. +.+|+
T Consensus 18 ~~l~~~nl~~~~----------------~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 80 (267)
T PRK14235 18 IKMRARDVSVFY----------------GEK-QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGK 80 (267)
T ss_pred ceEEEEeEEEEE----------------CCE-EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceE
Confidence 369999999999 334 6999999999999999999999999999999999998751 24899
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCcc----cccc
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH-VGLNRAKARVSELLKELGLEH----VANV 163 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~----~~~~ 163 (610)
|.++|+++.. ..+++.++|++|++.+++. ||+||+.++...+.. .+..+.+++++++++.+||.+ ..++
T Consensus 81 I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 159 (267)
T PRK14235 81 ITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHE 159 (267)
T ss_pred EEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhC
Confidence 9999998742 2356779999999988885 999999987654321 123334567889999999964 2344
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
. ++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||+++|+++ .+.+++|+
T Consensus 160 ~-----~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~-~-~~tiiivtH~~~-~~~~~~d~ 231 (267)
T PRK14235 160 P-----GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR-Q-NYTIVIVTHSMQ-QAARVSQR 231 (267)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh-c-CCeEEEEEcCHH-HHHhhCCE
Confidence 3 46999999999999999999999999999999999999999999999986 3 689999999998 47899999
Q ss_pred EEEeeCCeEEEEcChhHH
Q 044112 244 ILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~ 261 (610)
+++|++|+++..|+++++
T Consensus 232 v~~l~~G~i~~~g~~~~~ 249 (267)
T PRK14235 232 TAFFHLGNLVEVGDTEKM 249 (267)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999988765
No 162
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-43 Score=355.73 Aligned_cols=219 Identities=26% Similarity=0.397 Sum_probs=186.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~ 93 (610)
..|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+
T Consensus 3 ~~l~~~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~ 65 (251)
T PRK14270 3 IKMESKNLNLWY----------------GEK-QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGE 65 (251)
T ss_pred cEEEEEEeEEEE----------------CCe-eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccE
Confidence 468999999998 334 6999999999999999999999999999999999998652 24899
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VANVR 164 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~ 164 (610)
|.++|+++.. ...++.++|++|++.+++ +|++||+.+..........++.+++++++++.+||.+ ..++.
T Consensus 66 i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 144 (251)
T PRK14270 66 VLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKS 144 (251)
T ss_pred EEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCC
Confidence 9999998742 234677999999999887 8999999987654311123344567888999998852 34444
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++|++
T Consensus 145 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~d~v 216 (251)
T PRK14270 145 -----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNMQ-QASRVSDYT 216 (251)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCHH-HHHHhcCEE
Confidence 469999999999999999999999999999999999999999999999864 589999999997 588999999
Q ss_pred EEeeCCeEEEEcChhHH
Q 044112 245 LLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~ 261 (610)
++|++|++++.|+++++
T Consensus 217 ~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 217 AFFLMGDLIEFNKTEKI 233 (251)
T ss_pred EEEECCeEEEeCCHHHH
Confidence 99999999999998875
No 163
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-43 Score=348.87 Aligned_cols=206 Identities=31% Similarity=0.480 Sum_probs=178.4
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
+++ ||+++| +++ .+ |+|+++++ |+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 2 ~~~-~l~~~~----------------~~~-~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 58 (214)
T cd03297 2 LCV-DIEKRL----------------PDF-TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD--GGTIVLNG 58 (214)
T ss_pred cee-eeeEec----------------CCe-ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC
Confidence 344 888888 334 44 99999999 999999999999999999999999876 99999999
Q ss_pred EeCCh-------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 99 QPMNI-------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 99 ~~~~~-------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
+++.. ...++.++|++|++.+++.+|++||+.+..... ..+..+++++++++.+|+.+..++.+ .
T Consensus 59 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 59 TVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK---RNREDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred EecccccchhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC---CHHHHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 98642 134567999999999999999999998875422 22334567889999999988777665 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999998655899999999997 4788999999999999
Q ss_pred EEEEc
Q 044112 252 VVHHG 256 (610)
Q Consensus 252 iv~~g 256 (610)
++..|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98765
No 164
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-43 Score=358.58 Aligned_cols=224 Identities=23% Similarity=0.339 Sum_probs=186.0
Q ss_pred CCCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--C-C
Q 044112 12 DRKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--L-R 88 (610)
Q Consensus 12 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~-~ 88 (610)
++.+..+|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+ + .
T Consensus 15 ~~~~~~~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~ 77 (268)
T PRK14248 15 PEAKEHILEVKDLSIYY----------------GEK-RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSA 77 (268)
T ss_pred CCCCCceEEEEEEEEEe----------------CCc-eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCC
Confidence 34444579999999998 334 79999999999999999999999999999999999864 1 1
Q ss_pred CceeEEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----c
Q 044112 89 RVSGSVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----H 159 (610)
Q Consensus 89 ~~~G~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~ 159 (610)
+.+|+|.++|+++.. ...++.++|++|++.+++. |++||+.+.............++.+.++++.+++. +
T Consensus 78 ~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 78 RSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKD 156 (268)
T ss_pred CCceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHH
Confidence 348999999998742 2346679999999988885 99999998754321112223345678889999885 2
Q ss_pred cccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH
Q 044112 160 VANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE 239 (610)
Q Consensus 160 ~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~ 239 (610)
..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+
T Consensus 157 ~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~~~~ 228 (268)
T PRK14248 157 RLHSSA-----LSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-E-EYSIIIVTHNMQ-QALR 228 (268)
T ss_pred HHhcCc-----ccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-c-CCEEEEEEeCHH-HHHH
Confidence 334444 6999999999999999999999999999999999999999999999985 3 589999999997 4788
Q ss_pred hcceEEEeeCCeEEEEcChhHH
Q 044112 240 LFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 240 ~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
++|++++|++|++++.|+++++
T Consensus 229 ~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 229 VSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred hCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999998765
No 165
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-43 Score=355.02 Aligned_cols=218 Identities=26% Similarity=0.386 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--CC-CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--LR-RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~-~~~G~I 94 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|+|
T Consensus 5 ~l~~~~l~~~~----------------~~~-~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i 67 (252)
T PRK14239 5 ILQVSDLSVYY----------------NKK-KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67 (252)
T ss_pred eEEEEeeEEEE----------------CCe-eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE
Confidence 58999999998 334 69999999999999999999999999999999999854 31 138999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VANVRI 165 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 165 (610)
.++|+++.. ..+++.++|++|++.+++ +||+||+.+....+.....+..+++++++++.+++.+ ..++.
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 145 (252)
T PRK14239 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDS- 145 (252)
T ss_pred EECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcC-
Confidence 999998732 234677999999998887 7999999987543311122334567888999998753 33444
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
++.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|+++
T Consensus 146 ----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sH~~~-~~~~~~d~i~ 218 (252)
T PRK14239 146 ----ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK-D-DYTMLLVTRSMQ-QASRISDRTG 218 (252)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh-h-CCeEEEEECCHH-HHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999985 3 589999999997 5889999999
Q ss_pred EeeCCeEEEEcChhHH
Q 044112 246 LLSKGTVVHHGSLDLL 261 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~ 261 (610)
+|++|++++.|+++++
T Consensus 219 ~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 219 FFLDGDLIEYNDTKQM 234 (252)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998775
No 166
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-43 Score=354.44 Aligned_cols=221 Identities=29% Similarity=0.419 Sum_probs=186.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCC---ceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRR---VSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~---~~G~ 93 (610)
++|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|.+ .+|+
T Consensus 3 ~~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~ 65 (252)
T PRK14272 3 LLLSAQDVNIYY----------------GDK-QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGR 65 (252)
T ss_pred EEEEEeeeEEEE----------------CCE-EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCcee
Confidence 468999999998 334 79999999999999999999999999999999999987642 3799
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----cccccc
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVR 164 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ 164 (610)
|.++|+++.. ..+++.++|++|++.+++.+|+.||+.+..........++..++++++++.+++. +..++.
T Consensus 66 i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 145 (252)
T PRK14272 66 ILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTP 145 (252)
T ss_pred EEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC
Confidence 9999998742 2456679999999999999999999988654321112333456677788888764 334444
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+ +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ .+.+++|++
T Consensus 146 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~i 217 (252)
T PRK14272 146 A-----TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK-K-VTTIIIVTHNMH-QAARVSDTT 217 (252)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEE
Confidence 4 6999999999999999999999999999999999999999999999986 3 689999999998 478899999
Q ss_pred EEeeCCeEEEEcChhHHH
Q 044112 245 LLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~~ 262 (610)
++|++|++++.|++++..
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 218 SFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988753
No 167
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-43 Score=359.36 Aligned_cols=221 Identities=21% Similarity=0.327 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++++.. +... .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++
T Consensus 4 ~l~~~~l~~~~~~-------------~~~~-~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 67 (277)
T PRK13642 4 ILEVENLVFKYEK-------------ESDV-NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF--EGKVKID 67 (277)
T ss_pred eEEEEEEEEEcCC-------------CCcC-eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCEEEEC
Confidence 5899999999831 1122 5999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++|++|++. .++..||.||+.++.... ....++..++++++++.+||.+..++.+ ..|
T Consensus 68 g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (277)
T PRK13642 68 GELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ-GIPREEMIKRVDEALLAVNMLDFKTREP-----ARL 141 (277)
T ss_pred CEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc-CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccC
Confidence 998753 345678999999974 677789999998875432 1233444567899999999988877765 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. +. .+|++++|++|+++
T Consensus 142 S~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~ 219 (277)
T PRK13642 142 SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEII 219 (277)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986568999999999984 54 69999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
..|+++++.
T Consensus 220 ~~g~~~~~~ 228 (277)
T PRK13642 220 KEAAPSELF 228 (277)
T ss_pred EeCCHHHHh
Confidence 999988764
No 168
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-43 Score=354.63 Aligned_cols=223 Identities=28% Similarity=0.442 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|
T Consensus 3 ~l~~~~l~~~~----------------~~~-~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i 65 (250)
T PRK14262 3 IIEIENFSAYY----------------GEK-KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI 65 (250)
T ss_pred eEEEEeeEEEe----------------CCc-eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence 58999999998 334 6999999999999999999999999999999999998641 248999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
.++|.++.. ...++.++|++|++.+++ .|++||+.+..........+..++.++++++.+|+.+..+... +..
T Consensus 66 ~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 143 (250)
T PRK14262 66 YFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSEL-NKP 143 (250)
T ss_pred EECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHH-hCC
Confidence 999998742 234677999999999887 8999999987644311123334566788999999864211111 233
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+.+||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ .+.+++|++++|++
T Consensus 144 ~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tili~sH~~~-~~~~~~d~i~~l~~ 220 (250)
T PRK14262 144 GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS-E-NYTIVIVTHNIG-QAIRIADYIAFMYR 220 (250)
T ss_pred hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh-c-CcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999986 3 689999999997 47899999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|+++..|+++++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14262 221 GELIEYGPTREIV 233 (250)
T ss_pred CEEEEecCHHHHH
Confidence 9999999987764
No 169
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=353.84 Aligned_cols=218 Identities=30% Similarity=0.454 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
.|+++||++.+ +.+ .+++|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|
T Consensus 3 ~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 65 (250)
T PRK14240 3 KISVKDLDLFY----------------GDF-QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV 65 (250)
T ss_pred eEEEEEEEEEE----------------CCc-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence 48899999998 334 6999999999999999999999999999999999987532 148999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VANVRI 165 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 165 (610)
.++|+++.. ...++.++|++|++.+++ +|++||+.+....+.....++.+++++++++.+++.+ ..++.+
T Consensus 66 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~ 144 (250)
T PRK14240 66 LLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSA 144 (250)
T ss_pred EECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCC
Confidence 999998742 235677999999998888 8999999987644321123345567888999998753 334444
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ .+.+.+|+++
T Consensus 145 -----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~-~~~~~~d~v~ 216 (250)
T PRK14240 145 -----LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-K-DYTIVIVTHNMQ-QASRISDKTA 216 (250)
T ss_pred -----CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEEeCHH-HHHhhCCEEE
Confidence 6999999999999999999999999999999999999999999999985 4 789999999997 4889999999
Q ss_pred EeeCCeEEEEcChhHH
Q 044112 246 LLSKGTVVHHGSLDLL 261 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~ 261 (610)
+|++|+++..|+++++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 217 FFLNGEIVEFGDTVDL 232 (250)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999988765
No 170
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-43 Score=360.26 Aligned_cols=221 Identities=25% Similarity=0.386 Sum_probs=187.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC------Cce
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR------RVS 91 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~------~~~ 91 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ ..+
T Consensus 1 ml~~~nl~~~~----------------~~~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~ 63 (272)
T PRK13547 1 MLTADHLHVAR----------------RHR-AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVT 63 (272)
T ss_pred CeEEEEEEEEE----------------CCE-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCc
Confidence 37899999998 334 6999999999999999999999999999999999998763 127
Q ss_pred eEEEECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCcccccccc
Q 044112 92 GSVLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL---HVGLNRAKARVSELLKELGLEHVANVRI 165 (610)
Q Consensus 92 G~I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~v 165 (610)
|+|.++|+++.. ...++.++|++|++.+++.+||+||+.+...... ....++.+++++++++.+||.+..++.+
T Consensus 64 G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 64 GDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred eEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 999999998742 3455678999999876667899999988632111 1111234567889999999988777665
Q ss_pred cCCCCCccCHHHhhHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH
Q 044112 166 GGESSRGISGGEKRRVSIGVDLV---------HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFR 236 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~ 236 (610)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|+|||+++|+++ +
T Consensus 144 -----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~ 217 (272)
T PRK13547 144 -----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-L 217 (272)
T ss_pred -----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-H
Confidence 699999999999999999 5999999999999999999999999999997655899999999997 4
Q ss_pred HHHhcceEEEeeCCeEEEEcChhHH
Q 044112 237 ILELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 237 i~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
+.+++|++++|++|++++.|+++++
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHH
Confidence 7889999999999999999998765
No 171
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.4e-43 Score=353.59 Aligned_cols=227 Identities=31% Similarity=0.416 Sum_probs=186.6
Q ss_pred EEEeEEEEEeccccccc---cccc--ccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 20 RTKKLTYRSFRGVDEFN---WFCS--WKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 20 ~~~~ls~~~~~~~~~~~---~~~~--~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
.++|+++.|.......+ .+.+ .++.+.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~--~G~i 78 (236)
T cd03267 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREV-EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT--SGEV 78 (236)
T ss_pred ceecchhhccCcCCccccchhHHHHHhcccCCe-eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ceEE
Confidence 56788888854321111 0111 1222344 7999999999999999999999999999999999999876 9999
Q ss_pred EECCEeCCh--hcccceEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 95 LVNEQPMNI--TQFRRISGYVT-QDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 95 ~~~g~~~~~--~~~~~~~~yv~-Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
.++|++... ...++.++|++ |++.+++.+||+||+.+....+. ...++..++++++++.+||.+..++.+ .
T Consensus 79 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 152 (236)
T cd03267 79 RVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYD-LPPARFKKRLDELSELLDLEELLDTPV-----R 152 (236)
T ss_pred EECCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 999987532 34566899998 55678889999999998765432 223444567889999999998888876 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+
T Consensus 153 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 231 (236)
T cd03267 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGR 231 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCE
Confidence 899999999999999999999999999999999999999999999997666899999999997 4788999999999999
Q ss_pred EEEEc
Q 044112 252 VVHHG 256 (610)
Q Consensus 252 iv~~g 256 (610)
+++.|
T Consensus 232 i~~~g 236 (236)
T cd03267 232 LLYDG 236 (236)
T ss_pred EEecC
Confidence 98764
No 172
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-43 Score=354.08 Aligned_cols=218 Identities=25% Similarity=0.413 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|
T Consensus 3 ~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 65 (249)
T PRK14253 3 KFNIENLDLFY----------------GEN-QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65 (249)
T ss_pred eEEEeccEEEE----------------CCe-eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence 58899999998 334 7999999999999999999999999999999999998753 348999
Q ss_pred EECCEeCC----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 044112 95 LVNEQPMN----ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VANVRIG 166 (610)
Q Consensus 95 ~~~g~~~~----~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg 166 (610)
.++|.++. ....++.++|++|++.+++ .||.||+.+..........+..++++.++++.+++.+ ..++.
T Consensus 66 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 142 (249)
T PRK14253 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH-- 142 (249)
T ss_pred EECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcC--
Confidence 99999873 1345677999999999887 7999999987543211122334567788899998853 23333
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++
T Consensus 143 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~~-~~~~~~d~i~~ 216 (249)
T PRK14253 143 ---AFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSMQ-QARRISDRTAF 216 (249)
T ss_pred ---cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999863 589999999997 58889999999
Q ss_pred eeCCeEEEEcChhHH
Q 044112 247 LSKGTVVHHGSLDLL 261 (610)
Q Consensus 247 L~~G~iv~~g~~~~~ 261 (610)
|++|+++..|+++++
T Consensus 217 l~~G~i~~~g~~~~~ 231 (249)
T PRK14253 217 FLMGELVEHDDTQVI 231 (249)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999988764
No 173
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=357.07 Aligned_cols=221 Identities=28% Similarity=0.408 Sum_probs=186.8
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---Cce
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVS 91 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~ 91 (610)
+..+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+
T Consensus 22 ~~~~l~~~nl~~~~----------------~~~-~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~ 84 (272)
T PRK14236 22 EQTALEVRNLNLFY----------------GDK-QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE 84 (272)
T ss_pred CCcEEEEEEEEEEE----------------CCe-eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCc
Confidence 34479999999998 334 6999999999999999999999999999999999998741 348
Q ss_pred eEEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----ccc
Q 044112 92 GSVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VAN 162 (610)
Q Consensus 92 G~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~ 162 (610)
|+|.++|+++.. ...++.++|++|++.+++. |++||+.+..........+..+++++++++.+++.+ ..+
T Consensus 85 G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 163 (272)
T PRK14236 85 GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLH 163 (272)
T ss_pred eEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhh
Confidence 999999998742 2456789999999998886 999999987543311122333466888999999864 334
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|||++||+++ ++.+.+|
T Consensus 164 ~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~-~-~~tiiivtH~~~-~~~~~~d 235 (272)
T PRK14236 164 EN-----AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELK-S-KYTIVIVTHNMQ-QAARVSD 235 (272)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-h-CCeEEEEeCCHH-HHHhhCC
Confidence 33 46999999999999999999999999999999999999999999999996 3 689999999997 4788999
Q ss_pred eEEEeeCCeEEEEcChhHH
Q 044112 243 QILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~~~ 261 (610)
++++|++|+++..|+++++
T Consensus 236 ~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 236 YTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999988765
No 174
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-42 Score=355.07 Aligned_cols=225 Identities=29% Similarity=0.431 Sum_probs=188.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
.|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+++ ..+|+|
T Consensus 7 ~l~~~nl~~~~----------------~~~-~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i 69 (261)
T PRK14258 7 AIKVNNLSFYY----------------DTQ-KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRV 69 (261)
T ss_pred eEEEeeEEEEe----------------CCe-eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceE
Confidence 68999999998 334 6999999999999999999999999999999999998863 247999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
.++|+++.. ...++.++|++|++.+++ +|++||+.+........+..+..+++.++++.+++.+..+... +..
T Consensus 70 ~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 147 (261)
T PRK14258 70 EFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKI-HKS 147 (261)
T ss_pred EECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHh-cCC
Confidence 999988631 245677999999998888 8999999987543211123334567889999999854221111 223
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.++||++++|++
T Consensus 148 ~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~ 226 (261)
T PRK14258 148 ALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKG 226 (261)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEcc
Confidence 46999999999999999999999999999999999999999999999987556899999999997 58899999999999
Q ss_pred -----CeEEEEcChhHHH
Q 044112 250 -----GTVVHHGSLDLLE 262 (610)
Q Consensus 250 -----G~iv~~g~~~~~~ 262 (610)
|++++.|+++++.
T Consensus 227 ~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 227 NENRIGQLVEFGLTKKIF 244 (261)
T ss_pred CCCcCceEEEeCCHHHHH
Confidence 9999999998863
No 175
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-42 Score=350.18 Aligned_cols=216 Identities=31% Similarity=0.519 Sum_probs=189.0
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+ +. ++|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~--~G~v~i~g 60 (235)
T cd03299 1 LKVENLSKDW----------------KE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD--SGKILLNG 60 (235)
T ss_pred CeeEeEEEEe----------------CC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC--ceEEEECC
Confidence 4678999988 22 3799999999999999999999999999999999999876 99999999
Q ss_pred EeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 99 QPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 99 ~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
.++.. ...++.++|++|++.+++.+|+.||+.+..... .....+.++.+.++++.+||.+..++.+ +.|||||
T Consensus 61 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 134 (235)
T cd03299 61 KDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR-KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGE 134 (235)
T ss_pred EEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHH
Confidence 98753 223567999999999999999999999875432 1223445567889999999998888776 6899999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|++|+++..|+
T Consensus 135 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~ 213 (235)
T cd03299 135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGK 213 (235)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999987655899999999997 4788999999999999999998
Q ss_pred hhHH
Q 044112 258 LDLL 261 (610)
Q Consensus 258 ~~~~ 261 (610)
.++.
T Consensus 214 ~~~~ 217 (235)
T cd03299 214 PEEV 217 (235)
T ss_pred HHHH
Confidence 7764
No 176
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-43 Score=357.75 Aligned_cols=218 Identities=27% Similarity=0.410 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~ 93 (610)
.+|+++||++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.++. +.+|+
T Consensus 12 ~~l~i~nl~~~~----------------~~~-~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~ 74 (269)
T PRK14259 12 IIISLQNVTISY----------------GTF-EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGR 74 (269)
T ss_pred ceEEEEeEEEEE----------------CCE-EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 579999999998 334 6999999999999999999999999999999999998631 24899
Q ss_pred EEECCEeCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----cccccc
Q 044112 94 VLVNEQPMN-----ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVR 164 (610)
Q Consensus 94 I~~~g~~~~-----~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ 164 (610)
|.++|+++. ....++.++|++|++.+++. ||+||+.+.+..+. .. .+.+++++++++.+++. +..++.
T Consensus 75 v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~ 151 (269)
T PRK14259 75 VLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING-YT-GDMDELVERSLRKAAVWDECKDKLNES 151 (269)
T ss_pred EEECCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC-Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC
Confidence 999999863 23456779999999988884 99999998765431 11 22345678889998874 334444
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.++||++
T Consensus 152 -----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~-~-~~tiiivtH~~~-~~~~~~d~i 223 (269)
T PRK14259 152 -----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK-K-NFTIVIVTHNMQ-QAVRVSDMT 223 (269)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCEE
Confidence 46999999999999999999999999999999999999999999999985 3 689999999998 588999999
Q ss_pred EEeeC-----------CeEEEEcChhHHH
Q 044112 245 LLLSK-----------GTVVHHGSLDLLE 262 (610)
Q Consensus 245 ~~L~~-----------G~iv~~g~~~~~~ 262 (610)
++|++ |++++.|+++++.
T Consensus 224 ~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 224 AFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEeccccccccccccceEEEeCCHHHHH
Confidence 99996 6789999998764
No 177
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-44 Score=339.52 Aligned_cols=220 Identities=25% Similarity=0.422 Sum_probs=201.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+++++|++++| +.+ .+|+|+|.++++|.+++++|||||||||||.+++.+++.+ +|+|.++
T Consensus 1 MI~i~nv~K~y----------------~~~-~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d--~G~i~i~ 61 (252)
T COG4604 1 MITIENVSKSY----------------GTK-VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD--SGEITID 61 (252)
T ss_pred CeeehhhhHhh----------------CCE-EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc--CceEEEe
Confidence 47889999999 556 8999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL-HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|.++.. +++.+.++..-|+..+...+||+|-+.|+...+. +...++.+..++++++.++|++..|+.. .+|
T Consensus 62 g~~~~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~L 136 (252)
T COG4604 62 GLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DEL 136 (252)
T ss_pred eeecccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhH-----Hhc
Confidence 999853 5677888999999999999999999999854321 1234667788999999999999999887 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||.-||+.++++.+.++||||.++||-..+.++|++|++++++.|+||+++.||.+. ...++|+++-|++|+++
T Consensus 137 SGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv 215 (252)
T COG4604 137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVV 215 (252)
T ss_pred ccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999997 67899999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
..|+++++.
T Consensus 216 ~~G~~~eii 224 (252)
T COG4604 216 KQGSPDEII 224 (252)
T ss_pred ecCCHHHhc
Confidence 999999864
No 178
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=9e-43 Score=347.59 Aligned_cols=212 Identities=34% Similarity=0.545 Sum_probs=183.2
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+.. +.+.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++|
T Consensus 2 l~~~~l~~~~~~------------~~~~~-~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g 66 (220)
T TIGR02982 2 ISIRNLNHYYGH------------GSLRK-QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLG 66 (220)
T ss_pred EEEEEEEEEccC------------CCcce-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECC
Confidence 788999999831 01124 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 99 QPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 99 ~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
+++.. ...++.++|++|++.+++.+|+.||+.+..........++..++++++++.+||.+..++.+ +.
T Consensus 67 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 141 (220)
T TIGR02982 67 QELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----HN 141 (220)
T ss_pred EEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 98742 13467899999999999999999999987654321234445667899999999988777766 69
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|+++ +.+++|++++|++|++
T Consensus 142 lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 142 LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999997656899999999986 4589999999999986
No 179
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=5.2e-43 Score=351.71 Aligned_cols=200 Identities=31% Similarity=0.457 Sum_probs=174.2
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLM 130 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~ 130 (610)
|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.... ...+|++|++.+++.+||+||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT--SGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 58999999999999999999999999999999999876 999999999875321 22489999999999999999999
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 044112 131 YSARLRL-HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASAL 209 (610)
Q Consensus 131 ~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 209 (610)
+...... ....++.+++++++++.+||.+..++.+ .+||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 8643111 1233444567889999999998877776 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhH
Q 044112 210 NVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDL 260 (610)
Q Consensus 210 ~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 260 (610)
.+.+.|++++++.|+|||++||+++ ++.+++|++++|++|+++..|+..+
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCcee
Confidence 9999999997666899999999997 5889999999999999998886543
No 180
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-43 Score=390.25 Aligned_cols=220 Identities=21% Similarity=0.355 Sum_probs=192.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|++.+|+|.++
T Consensus 5 ~l~~~nl~~~~----------------~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~ 67 (506)
T PRK13549 5 LLEMKNITKTF----------------GGV-KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFE 67 (506)
T ss_pred eEEEeeeEEEe----------------CCe-EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 69999999998 334 7999999999999999999999999999999999999862349999999
Q ss_pred CEeCChh----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNIT----QFRRISGYVTQDEVLFPLLTVKETLMYSARLRL-H-VGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~~----~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~-~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++... ..++.++||+|++.+++.+||+||+.++...+. . .+.++.+++++++++.+||.+..++.+ +
T Consensus 68 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (506)
T PRK13549 68 GEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----G 142 (506)
T ss_pred CEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 9987431 234679999999999999999999998754321 1 123344567899999999988888777 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++ .+.++||++++|++|+
T Consensus 143 ~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~ 220 (506)
T PRK13549 143 NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKLN-EVKAISDTICVIRDGR 220 (506)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcHH-HHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999975 5899999999998 4788999999999999
Q ss_pred EEEEcChhHH
Q 044112 252 VVHHGSLDLL 261 (610)
Q Consensus 252 iv~~g~~~~~ 261 (610)
+++.|+++++
T Consensus 221 i~~~~~~~~~ 230 (506)
T PRK13549 221 HIGTRPAAGM 230 (506)
T ss_pred EeeecccccC
Confidence 9999988764
No 181
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.8e-43 Score=325.14 Aligned_cols=214 Identities=35% Similarity=0.492 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++++++.+... .++- .||++|++.+++||-+||+|||||||||||-+++|+..++ +|+|.+.
T Consensus 6 ii~~~~l~ktvg~~------------~~~l-~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s--sGeV~l~ 70 (228)
T COG4181 6 IIEVHHLSKTVGQG------------EGEL-SILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLL 70 (228)
T ss_pred eeehhhhhhhhcCC------------Ccce-eEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC--CceEEEc
Confidence 68899999988421 2333 7999999999999999999999999999999999998877 9999999
Q ss_pred CEeCCh------hcc-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 98 EQPMNI------TQF-RRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~------~~~-~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
|+++.. ..+ .+++|+|+|...+.|+||..||++..+.++.. +..+..+.+.++|+.+||.+..+.+.
T Consensus 71 G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge-~~~~~~~~A~~lL~~vGLg~Rl~HyP----- 144 (228)
T COG4181 71 GQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE-SSADSRAGAKALLEAVGLGKRLTHYP----- 144 (228)
T ss_pred CcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC-ccccHHHHHHHHHHHhCcccccccCc-----
Confidence 999743 223 36899999999999999999999999988643 34445667889999999998877654
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
.+|||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.++.|.|.|++||||. +..-|||.+-|.+|
T Consensus 145 ~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G 222 (228)
T COG4181 145 AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSG 222 (228)
T ss_pred cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecc
Confidence 6999999999999999999999999999999999999999999999999999999999999996 57889999999999
Q ss_pred eEEE
Q 044112 251 TVVH 254 (610)
Q Consensus 251 ~iv~ 254 (610)
+++.
T Consensus 223 ~l~~ 226 (228)
T COG4181 223 RLVE 226 (228)
T ss_pred eecc
Confidence 9864
No 182
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-43 Score=328.05 Aligned_cols=221 Identities=30% Similarity=0.478 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
++.+.+++.+|+. ..+ .+|+|+|+++.+||.++++||||||||||||+++|+.+|. .|+|.+|
T Consensus 3 ~l~~~~~sl~y~g--------------~~~-~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~--~G~i~l~ 65 (259)
T COG4525 3 MLNVSHLSLSYEG--------------KPR-SALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS--RGSIQLN 65 (259)
T ss_pred eeehhheEEecCC--------------cch-hhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc--cceEEEC
Confidence 4677888888842 224 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
|++++..-. .-|.|+|++.++|.+||.||++|+.+++ +.++.++.+++.+.+..+||++..++.+ -+|||||
T Consensus 66 ~r~i~gPga--ergvVFQ~~~LlPWl~~~dNvafgL~l~-Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGm 137 (259)
T COG4525 66 GRRIEGPGA--ERGVVFQNEALLPWLNVIDNVAFGLQLR-GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGM 137 (259)
T ss_pred CEeccCCCc--cceeEeccCccchhhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchH
Confidence 999864322 2489999999999999999999999886 3467778889999999999999888776 6999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC--CeEEEE
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK--GTVVHH 255 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~ 255 (610)
||||.|||||+.+|++|+||||++.||.-+++++.++|-+++++.|+.++++||+.+ |..-+++++++|+. |+++..
T Consensus 138 rQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 138 RQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred HHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEe
Confidence 999999999999999999999999999999999999999999999999999999998 57789999999995 799988
Q ss_pred cChhHHHHH
Q 044112 256 GSLDLLEHR 264 (610)
Q Consensus 256 g~~~~~~~~ 264 (610)
-+++-...|
T Consensus 217 ~~~df~rR~ 225 (259)
T COG4525 217 LPLDFARRY 225 (259)
T ss_pred cCCCHHHHh
Confidence 777644444
No 183
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-42 Score=351.91 Aligned_cols=218 Identities=24% Similarity=0.369 Sum_probs=184.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCC---ceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRR---VSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~---~~G~I 94 (610)
+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++.+ .+|+|
T Consensus 6 ~i~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 68 (253)
T PRK14261 6 ILSTKNLNLWY----------------GEK-HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI 68 (253)
T ss_pred eEEEeeeEEEE----------------CCe-eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence 68999999998 334 69999999999999999999999999999999999975322 38999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VANVRI 165 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 165 (610)
.++|+++.. ...++.++|++|++.+++. ||+||+.+....+......+.++++.++++.+++.+ ..++.
T Consensus 69 ~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 146 (253)
T PRK14261 69 LYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDS- 146 (253)
T ss_pred EECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcC-
Confidence 999998742 2346679999999998885 999999987654321122334567888899998853 23444
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++
T Consensus 147 ----~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~~-~~~~~~d~v~ 219 (253)
T PRK14261 147 ----ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNMQ-QAARVSDYTG 219 (253)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCHH-HHHhhCCEEE
Confidence 469999999999999999999999999999999999999999999999863 589999999997 4778999999
Q ss_pred EeeCCeEEEEcChhHH
Q 044112 246 LLSKGTVVHHGSLDLL 261 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~ 261 (610)
+|++|+++..|+++++
T Consensus 220 ~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 220 FMYLGKLIEFDKTTQI 235 (253)
T ss_pred EEECCEEEEcCCHHHH
Confidence 9999999999998765
No 184
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-42 Score=351.76 Aligned_cols=218 Identities=25% Similarity=0.390 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC--C-CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL--R-RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~--~-~~~G~I 94 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|++++ . +.+|+|
T Consensus 4 ~l~~~~l~~~~----------------~~~-~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v 66 (251)
T PRK14251 4 IISAKDVHLSY----------------GNY-EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI 66 (251)
T ss_pred eEEEEeeEEEE----------------CCe-eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE
Confidence 58999999998 334 799999999999999999999999999999999999862 1 248999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccccccc
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVRI 165 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v 165 (610)
.++|+++.. ...++.++|++|++.+++ .||+||+.+....+.....+..+++++++++.+++. +..++.
T Consensus 67 ~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 144 (251)
T PRK14251 67 KFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRN- 144 (251)
T ss_pred EECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccC-
Confidence 999998632 235677999999998886 799999988754321112233446788899999985 233444
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|+++
T Consensus 145 ----~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~i~ 217 (251)
T PRK14251 145 ----AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK-H-QYTFIMVTHNLQ-QAGRISDQTA 217 (251)
T ss_pred ----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH-c-CCeEEEEECCHH-HHHhhcCEEE
Confidence 36999999999999999999999999999999999999999999999985 3 689999999998 4788999999
Q ss_pred EeeCCeEEEEcChhHH
Q 044112 246 LLSKGTVVHHGSLDLL 261 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~ 261 (610)
+|++|+++..|+++++
T Consensus 218 ~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 218 FLMNGDLIEAGPTEEM 233 (251)
T ss_pred EEECCEEEEeCCHHHH
Confidence 9999999999998765
No 185
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=357.41 Aligned_cols=220 Identities=24% Similarity=0.387 Sum_probs=184.6
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--CC-Ccee
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--LR-RVSG 92 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~-~~~G 92 (610)
...|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|
T Consensus 37 ~~~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G 99 (286)
T PRK14275 37 KPHVVAKNFSIYY----------------GEF-EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG 99 (286)
T ss_pred ceEEEEeeeEEEE----------------CCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCce
Confidence 3468999999998 334 69999999999999999999999999999999999864 20 2499
Q ss_pred EEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccccc
Q 044112 93 SVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANV 163 (610)
Q Consensus 93 ~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 163 (610)
+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....+...+....++++.++++.+|+. +..++
T Consensus 100 ~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~ 178 (286)
T PRK14275 100 ALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDK 178 (286)
T ss_pred EEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhC
Confidence 99999998642 2356789999999988875 99999998764321112233456778889999874 34444
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+++|+
T Consensus 179 ~~-----~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~~-~~~~~~d~ 250 (286)
T PRK14275 179 NA-----LGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNMQ-QASRVSDY 250 (286)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCHH-HHHHhCCE
Confidence 44 69999999999999999999999999999999999999999999999863 589999999998 47889999
Q ss_pred EEEeeCCeEEEEcChhHH
Q 044112 244 ILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~ 261 (610)
+++|++|+++..|+++++
T Consensus 251 i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 251 TMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999998775
No 186
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.1e-42 Score=349.39 Aligned_cols=206 Identities=27% Similarity=0.441 Sum_probs=176.2
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC--CceeEEEECCEeCChhcc-cceEEEEccCCC--CCCCCC
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR--RVSGSVLVNEQPMNITQF-RRISGYVTQDEV--LFPLLT 124 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~--~~~G~I~~~g~~~~~~~~-~~~~~yv~Q~~~--l~~~lT 124 (610)
+++|+|+++++||+++|+||||||||||+|+|+|+.+|. +.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999999871 139999999998754333 357999999984 567789
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC
Q 044112 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLE---HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS 201 (610)
Q Consensus 125 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 201 (610)
++|++.+...... ...++.+++++++++.+|+. +..++.+ ..|||||||||+||++|+.+|++++|||||+
T Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 81 MGNHAIETLRSLG-KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred HHHHHHHHHHHcC-ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999987654321 12234456789999999998 4455555 6899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 202 GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 202 gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
|||+.++..+.+.|++++++.|+|||+++|+++ ++..++|++++|++|+++..|+++++.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999997655899999999998 588899999999999999999987753
No 187
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=353.29 Aligned_cols=218 Identities=28% Similarity=0.424 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-C--ceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-R--VSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~--~~G~I 94 (610)
.|+++|+++.| +.+ .+|+|+|+++++||+++|+|+||||||||+|+|+|+.++. + .+|+|
T Consensus 7 ~l~~~~l~~~~----------------~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i 69 (259)
T PRK14260 7 AIKVKDLSFYY----------------NTS-KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV 69 (259)
T ss_pred eEEEEEEEEEE----------------CCe-EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE
Confidence 58999999998 334 6999999999999999999999999999999999998753 2 48999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccccccc
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVRI 165 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v 165 (610)
.++|+++.. ...++.++|++|++.+++ +||+||+.++...+...+..+.+++++++++.+|+. +..++.
T Consensus 70 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~- 147 (259)
T PRK14260 70 DFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKS- 147 (259)
T ss_pred EECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCC-
Confidence 999998742 234567999999999888 899999988765432112334456788899999984 334444
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+++|+++
T Consensus 148 ----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiii~tH~~~-~i~~~~d~i~ 220 (259)
T PRK14260 148 ----ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR-S-ELTIAIVTHNMQ-QATRVSDFTA 220 (259)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHHhcCeEE
Confidence 46999999999999999999999999999999999999999999999986 3 589999999998 5889999999
Q ss_pred Eee-----CCeEEEEcChhHH
Q 044112 246 LLS-----KGTVVHHGSLDLL 261 (610)
Q Consensus 246 ~L~-----~G~iv~~g~~~~~ 261 (610)
+|+ +|++++.|+++++
T Consensus 221 ~l~~~~~~~G~i~~~~~~~~~ 241 (259)
T PRK14260 221 FFSTDESRIGQMVEFGVTTQI 241 (259)
T ss_pred EEeccCCCCceEEEeCCHHHH
Confidence 998 5999999999876
No 188
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-42 Score=352.44 Aligned_cols=219 Identities=25% Similarity=0.375 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++
T Consensus 3 ~l~~~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 63 (253)
T TIGR02323 3 LLQVSGLSKSY----------------GGG-KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD--HGTATYI 63 (253)
T ss_pred eEEEeeeEEEe----------------CCc-eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEe
Confidence 58999999998 334 6899999999999999999999999999999999999876 9999999
Q ss_pred CEe-----CCh---hc----ccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-cccc
Q 044112 98 EQP-----MNI---TQ----FRRISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVAN 162 (610)
Q Consensus 98 g~~-----~~~---~~----~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~ 162 (610)
|++ +.. .. .++.++|++|++. +.+.+|+.||+.+...........+.+++++++++.+|+. +..+
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~ 143 (253)
T TIGR02323 64 MRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRID 143 (253)
T ss_pred cccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhh
Confidence 976 431 11 2356999999974 4567899999976532111111223456788999999997 4666
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+.+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||+++|+++ .+.+++|
T Consensus 144 ~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d 217 (253)
T TIGR02323 144 DLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQ 217 (253)
T ss_pred cCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence 665 6999999999999999999999999999999999999999999999987656899999999997 4778999
Q ss_pred eEEEeeCCeEEEEcChhHH
Q 044112 243 QILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~~~ 261 (610)
++++|++|+++..|+++++
T Consensus 218 ~~~~l~~G~i~~~~~~~~~ 236 (253)
T TIGR02323 218 RLLVMQQGRVVESGLTDQV 236 (253)
T ss_pred EEEEEECCEEEEECCHHHH
Confidence 9999999999999988765
No 189
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-42 Score=376.08 Aligned_cols=229 Identities=28% Similarity=0.454 Sum_probs=203.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC--CceeEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR--RVSGSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~--~~~G~I~ 95 (610)
.|+++||++.+... .+.. .+++||||++++||++||+|.|||||||+.++|.|++++. ..+|+|.
T Consensus 5 lL~V~nL~v~~~~~------------~~~~-~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~ 71 (539)
T COG1123 5 LLEVENLTVEFATD------------GGRV-PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71 (539)
T ss_pred eEEEeceEEEEecC------------Ccce-eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE
Confidence 79999999999521 1223 7999999999999999999999999999999999999875 3589999
Q ss_pred ECCEeCCh---h---c-ccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 044112 96 VNEQPMNI---T---Q-FRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG 166 (610)
Q Consensus 96 ~~g~~~~~---~---~-~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 166 (610)
++|+++.. . . ..+.|+|++|++ .+.|-+|+.+.+.-....+...+.++.++++.++|+++||.+....
T Consensus 72 ~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~--- 148 (539)
T COG1123 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR--- 148 (539)
T ss_pred ECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---
Confidence 99997532 1 2 346799999997 4778899999999888877655677888999999999999886654
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+|++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++.|.++|++|||+.. +.++||||++
T Consensus 149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~V-va~~aDrv~V 227 (539)
T COG1123 149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVV 227 (539)
T ss_pred ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHH-HHHhcCeEEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999985 8999999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|++++.|+++++.+
T Consensus 228 m~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 228 MYKGEIVETGPTEEILS 244 (539)
T ss_pred EECCEEEEecCHHHHHh
Confidence 99999999999999864
No 190
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=2.4e-42 Score=354.78 Aligned_cols=228 Identities=27% Similarity=0.390 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++.+..... ...+..+ .+++|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++
T Consensus 3 ~l~~~nl~~~~~~~~~-------~~~~~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--sG~i~~~ 72 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL-------SGKHQHQ-TVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWR 72 (268)
T ss_pred eEEEeceEEEecCCcc-------ccccCce-eeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEC
Confidence 5899999999831000 0000124 7999999999999999999999999999999999998876 9999999
Q ss_pred CEeCCh------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCC
Q 044112 98 EQPMNI------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGE 168 (610)
Q Consensus 98 g~~~~~------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 168 (610)
|+++.. ...++.++|++|++ .+++..|+.|++.+...........+..++++++++.+|+. +..++.+
T Consensus 73 g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 149 (268)
T PRK10419 73 GEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRP--- 149 (268)
T ss_pred CEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCC---
Confidence 998642 13467899999997 46778999999987543211112334456789999999996 4666655
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||+++ .+.+++|++++|+
T Consensus 150 --~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~ 226 (268)
T PRK10419 150 --PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD 226 (268)
T ss_pred --ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999997656899999999997 4788999999999
Q ss_pred CCeEEEEcChhHH
Q 044112 249 KGTVVHHGSLDLL 261 (610)
Q Consensus 249 ~G~iv~~g~~~~~ 261 (610)
+|++++.|+++++
T Consensus 227 ~G~i~~~g~~~~~ 239 (268)
T PRK10419 227 NGQIVETQPVGDK 239 (268)
T ss_pred CCEEeeeCChhhc
Confidence 9999999998774
No 191
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-42 Score=350.11 Aligned_cols=220 Identities=26% Similarity=0.374 Sum_probs=183.7
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--CC-Ccee
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--LR-RVSG 92 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~-~~~G 92 (610)
..+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+ |. +.+|
T Consensus 3 ~~~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 65 (252)
T PRK14255 3 KKIITSSDVHLFY----------------GKF-EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITG 65 (252)
T ss_pred cceEEEEeEEEEE----------------CCe-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCccc
Confidence 3468999999998 334 79999999999999999999999999999999999865 31 2489
Q ss_pred EEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccccc
Q 044112 93 SVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANV 163 (610)
Q Consensus 93 ~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 163 (610)
+|.++|+++.. ...++.++|++|++.+++ .||+||+.+....+.....+..++++.+.++.+++. +..++
T Consensus 66 ~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~ 144 (252)
T PRK14255 66 NVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHE 144 (252)
T ss_pred EEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhc
Confidence 99999998732 235678999999998888 699999998754432112222345677788888774 23344
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|+
T Consensus 145 ~-----~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~~-~~~~~~d~ 216 (252)
T PRK14255 145 S-----ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSMH-QASRISDK 216 (252)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCHH-HHHHhCCE
Confidence 3 469999999999999999999999999999999999999999999999864 479999999997 47889999
Q ss_pred EEEeeCCeEEEEcChhHH
Q 044112 244 ILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~ 261 (610)
+++|++|+++..|++.+.
T Consensus 217 i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 217 TAFFLTGNLIEFADTKQM 234 (252)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999988765
No 192
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.7e-42 Score=351.66 Aligned_cols=218 Identities=24% Similarity=0.414 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC--CceeEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR--RVSGSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~--~~~G~I~ 95 (610)
.|+++|+++++ + + .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+|.
T Consensus 4 ~l~~~~l~~~~----------------~-~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~ 65 (254)
T PRK10418 4 QIELRNIALQA----------------A-Q-PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVL 65 (254)
T ss_pred EEEEeCeEEEe----------------c-c-ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEE
Confidence 68999999987 1 2 6899999999999999999999999999999999999871 1389999
Q ss_pred ECCEeCChhcc-cceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCC
Q 044112 96 VNEQPMNITQF-RRISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH---VANVRIGGES 169 (610)
Q Consensus 96 ~~g~~~~~~~~-~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~ 169 (610)
++|++++.... ++.++|++|++. +.+.+|+.+++.+.+... ... ..+++++++++.+||.+ ..++.+
T Consensus 66 ~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~---- 138 (254)
T PRK10418 66 LDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-GKP--ADDATLTAALEAVGLENAARVLKLYP---- 138 (254)
T ss_pred ECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc-CCC--hHHHHHHHHHHHcCCCChhhhhhcCC----
Confidence 99998754333 357999999974 456689999987754332 111 22367889999999976 345554
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||+++|+++ ++.+++|++++|++
T Consensus 139 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~ 216 (254)
T PRK10418 139 -FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH 216 (254)
T ss_pred -cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999997656899999999997 47789999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|+++..|+++++.
T Consensus 217 G~i~~~~~~~~~~ 229 (254)
T PRK10418 217 GRIVEQGDVETLF 229 (254)
T ss_pred CEEEEecCHHHHh
Confidence 9999999987753
No 193
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=355.29 Aligned_cols=224 Identities=26% Similarity=0.407 Sum_probs=187.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~ 93 (610)
..|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+
T Consensus 20 ~~l~i~nl~~~~----------------~~~-~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~ 82 (276)
T PRK14271 20 PAMAAVNLTLGF----------------AGK-TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGD 82 (276)
T ss_pred cEEEEeeEEEEE----------------CCE-EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceE
Confidence 368999999999 334 7999999999999999999999999999999999998752 34899
Q ss_pred EEECCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 94 VLVNEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 94 I~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
|.++|+++.. ...++.++|++|++.+++ .|++||+.+........+.++.++++.++++.+|+.+..++.. +..
T Consensus 83 i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~ 160 (276)
T PRK14271 83 VLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDS 160 (276)
T ss_pred EEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCC
Confidence 9999998742 245678999999998888 7999999987543211233444556788999999975322111 123
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+++|++++|++
T Consensus 161 ~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~~-~~~~~~dri~~l~~ 237 (276)
T PRK14271 161 PFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLA-QAARISDRAALFFD 237 (276)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999999864 489999999997 58899999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|+++..|+++++.
T Consensus 238 G~i~~~g~~~~~~ 250 (276)
T PRK14271 238 GRLVEEGPTEQLF 250 (276)
T ss_pred CEEEEeCCHHHHH
Confidence 9999999988753
No 194
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-43 Score=353.38 Aligned_cols=236 Identities=27% Similarity=0.351 Sum_probs=203.6
Q ss_pred eeEEEEeEEEEEecccccccc-cccc-------cccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC
Q 044112 17 YRIRTKKLTYRSFRGVDEFNW-FCSW-------KEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR 88 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~-~~~~-------~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~ 88 (610)
..|+++|+++-+....+..-. .... ++.+.. .-++|+|++++.|||..|||-||||||||+++|.++.+|+
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~v-vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept 81 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLV-VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT 81 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcE-EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC
Confidence 468999998877321111000 0000 111222 5679999999999999999999999999999999999987
Q ss_pred CceeEEEECCEeCCh------hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc
Q 044112 89 RVSGSVLVNEQPMNI------TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA 161 (610)
Q Consensus 89 ~~~G~I~~~g~~~~~------~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 161 (610)
+|+|+++|+++.. .+ .++.+++|+|+..|+|+.||.||..|+..++ +.+++++++++.++|+.+||+.+.
T Consensus 82 --~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~-Gv~~~er~~~a~~~l~~VgL~~~~ 158 (386)
T COG4175 82 --RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ-GVPKAEREERALEALELVGLEGYA 158 (386)
T ss_pred --CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec-CCCHHHHHHHHHHHHHHcCchhhh
Confidence 9999999998742 23 3467999999999999999999999998875 347788899999999999999999
Q ss_pred cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 162 NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 162 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
++++ ++|||||||||.|||||+++|+||++|||+|.|||--+.++.+.|.++.++.++|||++|||++ |.+++.
T Consensus 159 ~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG 232 (386)
T COG4175 159 DKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIG 232 (386)
T ss_pred hcCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhcc
Confidence 9876 6999999999999999999999999999999999999999999999998889999999999998 689999
Q ss_pred ceEEEeeCCeEEEEcChhHHH
Q 044112 242 DQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 242 D~v~~L~~G~iv~~g~~~~~~ 262 (610)
|||.+|++|+++..|+|+++.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHH
Confidence 999999999999999999875
No 195
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1e-42 Score=387.77 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 4 ~i~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~~~ 64 (501)
T PRK10762 4 LLQLKGIDKAF----------------PGV-KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD--AGSILYL 64 (501)
T ss_pred eEEEeeeEEEe----------------CCe-EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEC
Confidence 58999999998 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---h-cccceEEEEccCCCCCCCCCHHHHHHHHHHhcC--C-CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 98 EQPMNI---T-QFRRISGYVTQDEVLFPLLTVKETLMYSARLRL--H-VGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~---~-~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~--~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
|+++.. . ..++.++|++|++.+++.+||+||+.++...+. . .+.++.+++++++++.+||.+..++++
T Consensus 65 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 139 (501)
T PRK10762 65 GKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV----- 139 (501)
T ss_pred CEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----
Confidence 998742 1 134679999999999999999999998754321 1 123344567899999999998888777
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|
T Consensus 140 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~~-~~~~~~d~i~~l~~G 217 (501)
T PRK10762 140 GELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRLK-EIFEICDDVTVFRDG 217 (501)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 59999999999999999999999999999999999999999999999975 5899999999998 588999999999999
Q ss_pred eEEEEcChhHH
Q 044112 251 TVVHHGSLDLL 261 (610)
Q Consensus 251 ~iv~~g~~~~~ 261 (610)
+++..|+++++
T Consensus 218 ~i~~~~~~~~~ 228 (501)
T PRK10762 218 QFIAEREVADL 228 (501)
T ss_pred EEEEecCcCcC
Confidence 99999988754
No 196
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-42 Score=350.00 Aligned_cols=222 Identities=27% Similarity=0.433 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
.|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +.+|+|
T Consensus 4 ~l~~~~l~~~~----------------~~~-~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v 66 (251)
T PRK14249 4 KIKIRGVNFFY----------------HKH-QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV 66 (251)
T ss_pred eEEEEEEEEEE----------------CCe-eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE
Confidence 48899999998 334 6999999999999999999999999999999999998864 136999
Q ss_pred EECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 95 LVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 95 ~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
.++|+++.. ...++.++|++|++.+++. |++||+.+....+.....++.+++++++++.+++.+..+... +..
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~ 144 (251)
T PRK14249 67 LLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNL-HKS 144 (251)
T ss_pred EECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHh-hCC
Confidence 999998642 2456789999999998885 999999987654321112233456788888888753211111 233
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++|++
T Consensus 145 ~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tilivsh~~~-~~~~~~d~i~~l~~ 221 (251)
T PRK14249 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q-NYTIAIVTHNMQ-QAARASDWTGFLLT 221 (251)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHHhhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999984 3 789999999998 47889999999999
Q ss_pred CeEEEEcChhHH
Q 044112 250 GTVVHHGSLDLL 261 (610)
Q Consensus 250 G~iv~~g~~~~~ 261 (610)
|++++.|+++++
T Consensus 222 G~i~~~~~~~~~ 233 (251)
T PRK14249 222 GDLVEYGRTGEI 233 (251)
T ss_pred CeEEEeCCHHHH
Confidence 999999998765
No 197
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-42 Score=354.19 Aligned_cols=219 Identities=26% Similarity=0.411 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--CC-CceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--LR-RVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~-~~~G~ 93 (610)
.+|+++|+++.| +.+ .+|+|+|+++++||+++|+|+||||||||+++|+|+++ +. +.+|+
T Consensus 23 ~~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~ 85 (271)
T PRK14238 23 VVFDTQNLNLWY----------------GED-HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGK 85 (271)
T ss_pred eEEEEeeeEEEE----------------CCc-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCcee
Confidence 369999999998 334 69999999999999999999999999999999999986 21 24999
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----cccccc
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVANVR 164 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~ 164 (610)
|.++|+++.. ..+++.++|++|++.+++. ||+||+.++...+.....+..++.+.++++.+++. +..++.
T Consensus 86 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 164 (271)
T PRK14238 86 ILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDN 164 (271)
T ss_pred EEECCEEcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcC
Confidence 9999998731 2456789999999988874 99999998764321112223345577788877543 333443
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||+++|+++ .+.+++|++
T Consensus 165 -----~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiivsH~~~-~i~~~~d~i 236 (271)
T PRK14238 165 -----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELK-K-DYSIIIVTHNMQ-QAARISDKT 236 (271)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-c-CCEEEEEEcCHH-HHHHhCCEE
Confidence 46999999999999999999999999999999999999999999999986 3 689999999997 478899999
Q ss_pred EEeeCCeEEEEcChhHH
Q 044112 245 LLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~ 261 (610)
++|++|+++..|+++++
T Consensus 237 ~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 237 AFFLNGYVNEYDDTDKI 253 (271)
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998765
No 198
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-42 Score=350.69 Aligned_cols=221 Identities=24% Similarity=0.384 Sum_probs=183.1
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--CC-CceeEEE
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--LR-RVSGSVL 95 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~-~~~G~I~ 95 (610)
-+++|+++.+ +.+ .+|+|+||++++||+++|+||||||||||+++|+|+.+ +. +.+|+|.
T Consensus 6 ~~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~ 68 (251)
T PRK14244 6 ASVKNLNLWY----------------GSK-QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELD 68 (251)
T ss_pred EEeeeEEEEE----------------CCe-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEE
Confidence 4678999988 334 79999999999999999999999999999999999976 21 3489999
Q ss_pred ECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 96 VNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH-VGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 96 ~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
++|+++.. ...++.++|++|++.+++. ||+||+.+....+.. ...++.++.++++++.+||.+...+.. +..
T Consensus 69 ~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 146 (251)
T PRK14244 69 IDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDS 146 (251)
T ss_pred ECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcC
Confidence 99998642 1356789999999988886 999999987543311 122334566889999999975221111 123
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++ ++.+++|++++|++
T Consensus 147 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiiiisH~~~-~~~~~~d~i~~l~~ 223 (251)
T PRK14244 147 AFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-K-NFTIIVVTHSMK-QAKKVSDRVAFFQS 223 (251)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHhhcCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999985 4 799999999998 47889999999999
Q ss_pred CeEEEEcChhHH
Q 044112 250 GTVVHHGSLDLL 261 (610)
Q Consensus 250 G~iv~~g~~~~~ 261 (610)
|++++.|+++++
T Consensus 224 G~i~~~~~~~~~ 235 (251)
T PRK14244 224 GRIVEYNTTQEI 235 (251)
T ss_pred CEEEEeCCHHHH
Confidence 999999998765
No 199
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-42 Score=340.23 Aligned_cols=197 Identities=34% Similarity=0.535 Sum_probs=166.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVLV 96 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~~ 96 (610)
.++|+|++|.|+.+ ++.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++. +.+|+|.+
T Consensus 3 ~~~~~~~~~~~~~~------------~~~~-~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i 69 (202)
T cd03233 3 TLSWRNISFTTGKG------------RSKI-PILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHY 69 (202)
T ss_pred eEEEEccEEEeccC------------CCCc-eeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEE
Confidence 58999999999521 1334 7999999999999999999999999999999999999832 34999999
Q ss_pred CCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 97 NEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 97 ~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
+|+++.. ...++.++|++|++.+++.+||+||+.++.... .++. +..||
T Consensus 70 ~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------~~~~-----~~~LS 120 (202)
T cd03233 70 NGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------GNEF-----VRGIS 120 (202)
T ss_pred CCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc------------------------cccc-----hhhCC
Confidence 9998753 345678999999999999999999998764311 2333 36899
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.+.|+|+++|+...++.+.+|++++|++|++++
T Consensus 121 ~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 121 GGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999765467777766654336889999999999999987
Q ss_pred Ec
Q 044112 255 HG 256 (610)
Q Consensus 255 ~g 256 (610)
.|
T Consensus 201 ~g 202 (202)
T cd03233 201 YG 202 (202)
T ss_pred cC
Confidence 64
No 200
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2e-42 Score=386.10 Aligned_cols=213 Identities=27% Similarity=0.435 Sum_probs=189.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 11 ~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~ 71 (510)
T PRK15439 11 LLCARSISKQY----------------SGV-EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIG 71 (510)
T ss_pred eEEEEeEEEEe----------------CCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 69999999999 334 6999999999999999999999999999999999999877 9999999
Q ss_pred CEeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 98 EQPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
|+++.. .. .++.++|++|++.+++.+||+||+.+.... .++.+++++++++.+||.+..++.+ .+|
T Consensus 72 g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (510)
T PRK15439 72 GNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-----RQASMQKMKQLLAALGCQLDLDSSA-----GSL 141 (510)
T ss_pred CEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-----chHHHHHHHHHHHHcCCCccccCCh-----hhC
Confidence 998743 22 234699999999999999999999886421 1234567889999999998888777 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|+++
T Consensus 142 SgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 142 EVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKLP-EIRQLADRISVMRDGTIA 219 (510)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999975 5899999999998 478999999999999999
Q ss_pred EEcChhHH
Q 044112 254 HHGSLDLL 261 (610)
Q Consensus 254 ~~g~~~~~ 261 (610)
+.|++++.
T Consensus 220 ~~g~~~~~ 227 (510)
T PRK15439 220 LSGKTADL 227 (510)
T ss_pred EecChHHc
Confidence 99998765
No 201
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-42 Score=386.59 Aligned_cols=218 Identities=26% Similarity=0.381 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++| +.+ .+|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|.++
T Consensus 5 ~l~~~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~--~G~i~~~ 65 (510)
T PRK09700 5 YISMAGIGKSF----------------GPV-HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITIN 65 (510)
T ss_pred eEEEeeeEEEc----------------CCe-EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC--ccEEEEC
Confidence 58999999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---h-cccceEEEEccCCCCCCCCCHHHHHHHHHHhc---CCC---CHHHHHHHHHHHHHHcCCcccccccccC
Q 044112 98 EQPMNI---T-QFRRISGYVTQDEVLFPLLTVKETLMYSARLR---LHV---GLNRAKARVSELLKELGLEHVANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~-~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~---~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 167 (610)
|+++.. . ..++.++|++|++.+++.+||+||+.++.... .+. +.++.+++++++++.+||.+..++++
T Consensus 66 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 143 (510)
T PRK09700 66 NINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-- 143 (510)
T ss_pred CEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch--
Confidence 998743 1 13457999999999999999999998764211 010 22344567899999999998888777
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++||+++ .+.++||++++|
T Consensus 144 ---~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~~-~~~~~~d~v~~l 218 (510)
T PRK09700 144 ---ANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKLA-EIRRICDRYTVM 218 (510)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 59999999999999999999999999999999999999999999999975 4899999999997 478899999999
Q ss_pred eCCeEEEEcChhHH
Q 044112 248 SKGTVVHHGSLDLL 261 (610)
Q Consensus 248 ~~G~iv~~g~~~~~ 261 (610)
++|++++.|+++++
T Consensus 219 ~~G~i~~~g~~~~~ 232 (510)
T PRK09700 219 KDGSSVCSGMVSDV 232 (510)
T ss_pred ECCEEeeecchhhC
Confidence 99999999998764
No 202
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-43 Score=382.41 Aligned_cols=221 Identities=32% Similarity=0.524 Sum_probs=191.1
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
.-.|+|+||++.|+.+ ++. .||||+||+++|||.+||+||||+||||+.++|-.++.|. +|+|.
T Consensus 463 ~G~IeF~~VsFaYP~R-------------p~~-~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt--sG~Il 526 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR-------------PDV-PVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT--SGRIL 526 (716)
T ss_pred cceEEEEEeeeecCCC-------------CCc-hhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CCeEE
Confidence 3469999999999632 334 7999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHcCCcccccccccC
Q 044112 96 VNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKAR-----VSELLKELGLEHVANVRIGG 167 (610)
Q Consensus 96 ~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~ 167 (610)
+||+|+.. ..+|++||+|.|||.||.. ||+|||.|+.. ..+.++..+. +++.+ .++.+-.||.||
T Consensus 527 lDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~---~~t~e~i~~AAk~ANah~FI--~~~p~gY~T~VG- 599 (716)
T KOG0058|consen 527 LDGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD---NATDEEIEAAAKMANAHEFI--TNFPDGYNTVVG- 599 (716)
T ss_pred ECCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC---CCCHHHHHHHHHHhChHHHH--HhCccccccccC-
Confidence 99999853 5688999999999999987 99999999864 2233333222 22333 356777899997
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+++.+||||||||++|||||++||+||||||.||+||+++...+-+.|.++.+ ++|||++.|.++ ..+.+|+|+++
T Consensus 600 EkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRLS--TV~~Ad~Ivvi 675 (716)
T KOG0058|consen 600 EKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRLS--TVRHADQIVVI 675 (716)
T ss_pred CccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhhh--HhhhccEEEEE
Confidence 77889999999999999999999999999999999999999999999999863 699999999997 46899999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|++++.|..+|+.+
T Consensus 676 ~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 676 DKGRVVEMGTHDELLS 691 (716)
T ss_pred cCCeEEecccHHHHhh
Confidence 9999999999888653
No 203
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.6e-42 Score=345.49 Aligned_cols=210 Identities=30% Similarity=0.455 Sum_probs=178.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++.+ +.+ .+++|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 7 ~i~~~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 67 (225)
T PRK10247 7 LLQLQNVGYLA----------------GDA-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT--SGTLLFE 67 (225)
T ss_pred eEEEeccEEee----------------CCc-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeEEEC
Confidence 69999999998 334 6999999999999999999999999999999999998876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 173 (610)
|+++.. ...++.++|++|++.+++. ||+||+.+....+.. ...+++++++++.+|+. ...++.+ +.|
T Consensus 68 g~~~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 138 (225)
T PRK10247 68 GEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ---QPDPAIFLDDLERFALPDTILTKNI-----AEL 138 (225)
T ss_pred CEEcCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcCC---ChHHHHHHHHHHHcCCChHHhcCCc-----ccC
Confidence 988642 3356789999999988874 999999986544311 11235678999999996 4566665 699
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee-CCeE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS-KGTV 252 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~i 252 (610)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++. + +.+|++++|+ ++..
T Consensus 139 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~ 216 (225)
T PRK10247 139 SGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGE 216 (225)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccch
Confidence 99999999999999999999999999999999999999999999976668999999999974 5 5799999995 4555
Q ss_pred EEEcC
Q 044112 253 VHHGS 257 (610)
Q Consensus 253 v~~g~ 257 (610)
+.+|.
T Consensus 217 ~~~~~ 221 (225)
T PRK10247 217 MQEAR 221 (225)
T ss_pred Hhhhh
Confidence 55554
No 204
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-42 Score=391.55 Aligned_cols=226 Identities=25% Similarity=0.396 Sum_probs=191.5
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++||+++|.. ..+.. .+|+||||++++||++||+||||||||||+|+|+|+++|+ +|+|.
T Consensus 10 ~~~l~v~~l~~~y~~------------~~~~~-~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~--~G~i~ 74 (623)
T PRK10261 10 RDVLAVENLNIAFMQ------------EQQKI-AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA--GGLVQ 74 (623)
T ss_pred CceEEEeceEEEecC------------CCCce-eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CeEEE
Confidence 346999999999931 01223 6999999999999999999999999999999999999876 89999
Q ss_pred ECCEeCC-------------hh---ccc-ceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC
Q 044112 96 VNEQPMN-------------IT---QFR-RISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELG 156 (610)
Q Consensus 96 ~~g~~~~-------------~~---~~~-~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg 156 (610)
++|..++ .. ..+ +.+|||+|++ .+++.+||+||+.++.+.+...+.++.++++.++++.+|
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~g 154 (623)
T PRK10261 75 CDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVR 154 (623)
T ss_pred ECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCC
Confidence 9987431 11 122 4699999997 688899999999998764322344455678999999999
Q ss_pred Ccc---cccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 157 LEH---VANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 157 L~~---~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
|.+ ..++++ .+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++.|+|||++|||+
T Consensus 155 L~~~~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl 229 (623)
T PRK10261 155 IPEAQTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM 229 (623)
T ss_pred CCChhhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 963 455555 699999999999999999999999999999999999999999999999866689999999999
Q ss_pred cHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 234 GFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 234 ~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
+ .+.++||++++|++|+++..|+++++.
T Consensus 230 ~-~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 230 G-VVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred H-HHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 8 488999999999999999999987753
No 205
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.5e-42 Score=339.52 Aligned_cols=199 Identities=30% Similarity=0.480 Sum_probs=172.2
Q ss_pred EEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe
Q 044112 21 TKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100 (610)
Q Consensus 21 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~ 100 (610)
++|+++.+ +++ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|++
T Consensus 1 i~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~ 61 (206)
T TIGR03608 1 LKNISKKF----------------GDK-IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD--SGQVYLNGKE 61 (206)
T ss_pred CcceEEEE----------------CCE-EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEECCEE
Confidence 36888887 334 6999999999999999999999999999999999999876 9999999998
Q ss_pred CC---h----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 101 MN---I----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 101 ~~---~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
+. . ...++.++|++|++.+++.+|++||+.+..... .....+..++++++++.+||++..++.+ ++|
T Consensus 62 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~l 135 (206)
T TIGR03608 62 TPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK-KLSKKEKREKKKEALEKVGLNLKLKQKI-----YEL 135 (206)
T ss_pred ccccchhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhC
Confidence 53 1 124568999999999999999999999876532 2233445667899999999988888776 589
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ..+.+|++++|
T Consensus 136 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 136 SGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999999999875 4899999999996 34789999875
No 206
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.1e-42 Score=394.47 Aligned_cols=218 Identities=30% Similarity=0.516 Sum_probs=186.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.++++|++|+|.. .+. .+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+
T Consensus 470 g~I~~~nvsf~y~~--------------~~~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~--~G~I~~ 532 (709)
T COG2274 470 GEIEFENVSFRYGP--------------DDP-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ--QGRILL 532 (709)
T ss_pred ceEEEEEEEEEeCC--------------CCc-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEE
Confidence 36999999999941 223 6999999999999999999999999999999999999987 999999
Q ss_pred CCEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-------Cccccccccc
Q 044112 97 NEQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELG-------LEHVANVRIG 166 (610)
Q Consensus 97 ~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg 166 (610)
||.+++ ...+|+++|||+||+.+|.. |++||+.++. +... .+.+.++++.-| +..-.++.+|
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p~~~---~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----PEAT---DEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----CCCC---HHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 999974 46789999999999999987 9999998863 2211 123333333333 3344577775
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+.+||||||||++|||||+++|+||+||||||+||+.+.+.+.+.|.++. .|+|+|+++|.++ ..+.|||+++
T Consensus 605 -E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHRl~--ti~~adrIiV 679 (709)
T COG2274 605 -EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHRLS--TIRSADRIIV 679 (709)
T ss_pred -cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEccch--HhhhccEEEE
Confidence 6788999999999999999999999999999999999999999999999985 4799999999996 5799999999
Q ss_pred eeCCeEEEEcChhHHHHH
Q 044112 247 LSKGTVVHHGSLDLLEHR 264 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~~ 264 (610)
|++|+++.+|+.+++.+.
T Consensus 680 l~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 680 LDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred ccCCceeccCCHHHHHHh
Confidence 999999999999988754
No 207
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-42 Score=390.56 Aligned_cols=232 Identities=24% Similarity=0.322 Sum_probs=193.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||++.|..+... + .++.+.+ .+|+||||++++||+++|+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 312 ~~L~~~~l~~~y~~~~~~---~--~~~~~~~-~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~--~G~I~~ 383 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGL---L--NRVTREV-HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ--GGEIIF 383 (623)
T ss_pred ceEEEeeeEEEEcCCCcc---c--cccCCce-EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CcEEEE
Confidence 469999999998311000 0 0000123 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh------hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccC
Q 044112 97 NEQPMNI------TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGG 167 (610)
Q Consensus 97 ~g~~~~~------~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~ 167 (610)
+|+++.. ..+++.++||+|++ .+++.+||.|++.+....+.....++.++++.++++.+||. +..++.+
T Consensus 384 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-- 461 (623)
T PRK10261 384 NGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP-- 461 (623)
T ss_pred CCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc--
Confidence 9998742 12456799999997 58899999999998765431112344557889999999996 5667665
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
++|||||||||+||+||+.+|++|||||||+|||+.++.+++++|++++++.|.|||++|||++ .+.++||++++|
T Consensus 462 ---~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl 537 (623)
T PRK10261 462 ---HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVM 537 (623)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999998766899999999998 488999999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|++++.|+++++.
T Consensus 538 ~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 538 YLGQIVEIGPRRAVF 552 (623)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
No 208
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-42 Score=353.09 Aligned_cols=219 Identities=26% Similarity=0.411 Sum_probs=184.7
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC---CCce
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL---RRVS 91 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~---~~~~ 91 (610)
...+|+++||++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|++++ .+.+
T Consensus 36 ~~~~l~i~~l~~~~----------------~~~-~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~ 98 (285)
T PRK14254 36 GETVIEARDLNVFY----------------GDE-QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVE 98 (285)
T ss_pred CCceEEEEEEEEEE----------------CCE-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCc
Confidence 34469999999998 334 699999999999999999999999999999999999863 1248
Q ss_pred eEEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----ccc
Q 044112 92 GSVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VAN 162 (610)
Q Consensus 92 G~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~ 162 (610)
|+|.++|+++.. ...++.++|++|++.+++. ||+||+.+....+. .. .+.+++++++++.+||.+ ..+
T Consensus 99 G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~i~~~~~ 175 (285)
T PRK14254 99 GELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG-YD-GDIDERVEESLRRAALWDEVKDQLD 175 (285)
T ss_pred eEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC-Cc-HHHHHHHHHHHHHcCCCchhHHHHh
Confidence 999999998632 2456789999999988885 99999998765432 12 234567889999999853 344
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+.+ .+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|
T Consensus 176 ~~~-----~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~--~~tiii~tH~~~-~i~~~~d 247 (285)
T PRK14254 176 SSG-----LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE--EYTVVIVTHNMQ-QAARISD 247 (285)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHhhcC
Confidence 444 69999999999999999999999999999999999999999999999974 379999999997 4788999
Q ss_pred eEE-EeeCCeEEEEcChhHH
Q 044112 243 QIL-LLSKGTVVHHGSLDLL 261 (610)
Q Consensus 243 ~v~-~L~~G~iv~~g~~~~~ 261 (610)
+++ +|++|+++..|+++++
T Consensus 248 ri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 248 KTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred EEEEEeeCCEEEEeCCHHHH
Confidence 975 6799999999988765
No 209
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-42 Score=373.65 Aligned_cols=218 Identities=28% Similarity=0.485 Sum_probs=190.3
Q ss_pred CCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeE
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGS 93 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~ 93 (610)
.+++.++.+|+++.|+ +++ ++++|+|+++++|+.+||+|+||||||||+++|+|+.+|+ +|+
T Consensus 316 ~~~~ei~~~~l~~~y~---------------~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~--~G~ 377 (559)
T COG4988 316 EPPIEISLENLSFRYP---------------DGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT--QGE 377 (559)
T ss_pred CCCceeeecceEEecC---------------CCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC--Cce
Confidence 4566777779999994 334 7999999999999999999999999999999999999876 999
Q ss_pred EEECCEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc------ccc
Q 044112 94 VLVNEQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA------NVR 164 (610)
Q Consensus 94 I~~~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~------~~~ 164 (610)
|.+||.+.. ...++++++||+|++.+++. |++||+.++.. +..++.+.++++..||.+.. |+.
T Consensus 378 I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-------~~s~e~i~~al~~a~l~~~v~~p~GLdt~ 449 (559)
T COG4988 378 IRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-------DASDEEIIAALDQAGLLEFVPKPDGLDTV 449 (559)
T ss_pred EEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-------cCCHHHHHHHHHHhcHHHhhcCCCcccch
Confidence 999998864 46799999999999999997 99999988632 12245677788888776544 455
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+| +.+++|||||+|||++||||+.+++++++||||++||.++.+.+++.|.++++ ++||+++||++. ...-+|+|
T Consensus 450 ig-e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl~--~~~~~D~I 524 (559)
T COG4988 450 IG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRLE--DAADADRI 524 (559)
T ss_pred hc-cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcChH--HHhcCCEE
Confidence 54 67789999999999999999999999999999999999999999999999984 589999999996 46789999
Q ss_pred EEeeCCeEEEEcChhHHH
Q 044112 245 LLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~~ 262 (610)
++|++|+++..|..+++.
T Consensus 525 ~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 525 VVLDNGRLVEQGTHEELS 542 (559)
T ss_pred EEecCCceeccCCHHHHh
Confidence 999999999999999874
No 210
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=350.41 Aligned_cols=224 Identities=24% Similarity=0.353 Sum_probs=186.3
Q ss_pred CCCCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC--
Q 044112 11 TDRKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-- 88 (610)
Q Consensus 11 ~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-- 88 (610)
....+..+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++.
T Consensus 13 ~~~~~~~~l~~~nl~~~~----------------~~~-~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~ 75 (274)
T PRK14265 13 TINPDHSVFEVEGVKVFY----------------GGF-LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG 75 (274)
T ss_pred ccCCCCceEEEeeEEEEe----------------CCe-EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccC
Confidence 334455589999999998 334 6999999999999999999999999999999999998642
Q ss_pred -CceeEEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----
Q 044112 89 -RVSGSVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE---- 158 (610)
Q Consensus 89 -~~~G~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---- 158 (610)
+.+|+|.++|+++.. ..+++.++|++|++.+++. ||.||+.+....+. . ....++.+++.++.+++.
T Consensus 76 ~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~-~-~~~~~~~~~~~l~~~~l~~~l~ 152 (274)
T PRK14265 76 AKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG-Y-KGNLDELVEDSLRRAAIWEEVK 152 (274)
T ss_pred CCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC-c-hHHHHHHHHHHHHHcccchhhH
Confidence 248999999998732 2356789999999988875 99999998754321 1 112334567788888874
Q ss_pred ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHH
Q 044112 159 HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRIL 238 (610)
Q Consensus 159 ~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~ 238 (610)
+..++. +..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++ + ++|||+++|+++ ++.
T Consensus 153 ~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~-~~tiii~sH~~~-~~~ 224 (274)
T PRK14265 153 DKLKEK-----GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK-E-QYTIIMVTHNMQ-QAS 224 (274)
T ss_pred HHhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH-HHH
Confidence 333443 46999999999999999999999999999999999999999999999986 3 689999999998 488
Q ss_pred HhcceEEEee---------CCeEEEEcChhHHH
Q 044112 239 ELFDQILLLS---------KGTVVHHGSLDLLE 262 (610)
Q Consensus 239 ~~~D~v~~L~---------~G~iv~~g~~~~~~ 262 (610)
+++|++++|+ +|++++.|+++++.
T Consensus 225 ~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 225 RVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred HhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 9999999998 79999999998763
No 211
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-42 Score=348.14 Aligned_cols=220 Identities=27% Similarity=0.432 Sum_probs=185.2
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
+-+|+++|+++++ +.+ .+|+|+||++++||+++|+||||||||||+++|+|+.+|+ +|+|.
T Consensus 8 ~~~i~~~~~~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~--~G~v~ 68 (257)
T PRK14246 8 EDVFNISRLYLYI----------------NDK-AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIY--DSKIK 68 (257)
T ss_pred hhheeeeeEEEec----------------CCc-eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--cCcee
Confidence 3469999999998 445 7999999999999999999999999999999999999876 65555
Q ss_pred EC------CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----ccc
Q 044112 96 VN------EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VAN 162 (610)
Q Consensus 96 ~~------g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~ 162 (610)
++ |+++. ....++.++|++|++.+++.+||+||+.++.........++.+++++++++.+++.+ ..+
T Consensus 69 ~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (257)
T PRK14246 69 VDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLN 148 (257)
T ss_pred EcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhc
Confidence 44 45542 234567899999999999999999999987543222223445567899999999964 334
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+. ++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + +.|||++||+++ .+.++||
T Consensus 149 ~~-----~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tiilvsh~~~-~~~~~~d 220 (257)
T PRK14246 149 SP-----ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK-N-EIAIVIVSHNPQ-QVARVAD 220 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CcEEEEEECCHH-HHHHhCC
Confidence 43 46999999999999999999999999999999999999999999999985 3 589999999997 4779999
Q ss_pred eEEEeeCCeEEEEcChhHHH
Q 044112 243 QILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~~~~ 262 (610)
++++|++|+++..|++++..
T Consensus 221 ~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 221 YVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999987654
No 212
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=345.84 Aligned_cols=223 Identities=28% Similarity=0.439 Sum_probs=185.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC--CC-CceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP--LR-RVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~-~~~G~ 93 (610)
+.|+++||++.+ +++ .+|+|+|+++++||+++|+||||||||||+++|+|+.+ +. +.+|+
T Consensus 2 ~~l~~~~v~~~~----------------~~~-~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 64 (250)
T PRK14266 2 YRIEVENLNTYF----------------DDA-HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGH 64 (250)
T ss_pred cEEEEEeEEEEe----------------CCe-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccE
Confidence 568999999998 334 69999999999999999999999999999999999864 21 24899
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 168 (610)
|.+||+++.. ...++.++|++|++.+++. |++||+.+..........+..++++.++++.+|+.+...... +.
T Consensus 65 v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~ 142 (250)
T PRK14266 65 IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKL-DK 142 (250)
T ss_pred EEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHH-hC
Confidence 9999998742 2456789999999998885 999999987543211123344567889999999854221111 23
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++ ++.+.+|++++|+
T Consensus 143 ~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~-~~~~~~~~i~~l~ 219 (250)
T PRK14266 143 SALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLK-E-DYTIVIVTHNMQ-QATRVSKYTSFFL 219 (250)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 346999999999999999999999999999999999999999999999985 3 789999999998 5889999999999
Q ss_pred CCeEEEEcChhHH
Q 044112 249 KGTVVHHGSLDLL 261 (610)
Q Consensus 249 ~G~iv~~g~~~~~ 261 (610)
+|++++.|+++++
T Consensus 220 ~G~i~~~g~~~~~ 232 (250)
T PRK14266 220 NGEIIESGLTDQI 232 (250)
T ss_pred CCeEEEeCCHHHH
Confidence 9999999998875
No 213
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.6e-42 Score=339.55 Aligned_cols=203 Identities=23% Similarity=0.334 Sum_probs=178.6
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++|+++++ +.+ .+++++|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+
T Consensus 10 ~~l~~~~l~~~~----------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~ 70 (214)
T PRK13543 10 PLLAAHALAFSR----------------NEE-PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQI 70 (214)
T ss_pred ceEEEeeEEEec----------------CCc-eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--CeeEEE
Confidence 469999999998 334 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+|+++.....++.++|++|++.+++.+|++||+.+....+. ...+++++++++.++|.+..++.+ ..||||
T Consensus 71 ~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (214)
T PRK13543 71 DGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG----RRAKQMPGSALAIVGLAGYEDTLV-----RQLSAG 141 (214)
T ss_pred CCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC----CcHHHHHHHHHHHcCChhhccCCh-----hhCCHH
Confidence 99987643445679999999999999999999998765421 112356788999999988777776 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++++.
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 142 QKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999999999875 5899999999998 58999999999863
No 214
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.7e-41 Score=345.13 Aligned_cols=222 Identities=24% Similarity=0.327 Sum_probs=184.1
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC--CCCCCcee
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM--IPLRRVSG 92 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~--~~~~~~~G 92 (610)
+..+|+++||++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+ +++. +|
T Consensus 4 ~~~~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~--~G 64 (252)
T CHL00131 4 NKPILEIKNLHASV----------------NEN-EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKIL--EG 64 (252)
T ss_pred CCceEEEEeEEEEe----------------CCE-EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCC--Cc
Confidence 34479999999998 334 699999999999999999999999999999999998 3444 99
Q ss_pred EEEECCEeCCh---hcccc-eEEEEccCCCCCCCCCHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHHcCCc-ccc
Q 044112 93 SVLVNEQPMNI---TQFRR-ISGYVTQDEVLFPLLTVKETLMYSARLRL-----H-VGLNRAKARVSELLKELGLE-HVA 161 (610)
Q Consensus 93 ~I~~~g~~~~~---~~~~~-~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~-----~-~~~~~~~~~v~~~l~~lgL~-~~~ 161 (610)
+|.++|+++.. ...++ .++|++|++.+++.+|++|++.+...... . ....+..+++.++++.+|+. +..
T Consensus 65 ~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 144 (252)
T CHL00131 65 DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL 144 (252)
T ss_pred eEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh
Confidence 99999998743 22233 48899999999999999999987643211 0 01122345778899999997 456
Q ss_pred cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-
Q 044112 162 NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL- 240 (610)
Q Consensus 162 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~- 240 (610)
++.++ .+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +...
T Consensus 145 ~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~~~-~~~~~ 218 (252)
T CHL00131 145 SRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQRL-LDYIK 218 (252)
T ss_pred ccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-HHhhh
Confidence 65552 25999999999999999999999999999999999999999999999874 58999999999874 5565
Q ss_pred cceEEEeeCCeEEEEcChhHH
Q 044112 241 FDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~~~~ 261 (610)
+|++++|++|++++.|+++.+
T Consensus 219 ~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 219 PDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred CCEEEEEeCCEEEEecChhhh
Confidence 899999999999999998743
No 215
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.6e-42 Score=347.95 Aligned_cols=214 Identities=29% Similarity=0.559 Sum_probs=174.2
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
++++|+++.+.. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 1 i~~~~l~~~~~~--------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~g 63 (237)
T cd03252 1 ITFEHVRFRYKP--------------DGP-VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDG 63 (237)
T ss_pred CEEEEEEEecCC--------------CCc-cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEECC
Confidence 468999998821 123 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCC
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAK-----ARVSELLKEL--GLEHVANVRIGGE 168 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~ 168 (610)
+++.. ...++.++|++|++.+++ .||+||+.+... ........ ...+++++.+ ++.+..+..
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---- 135 (237)
T cd03252 64 HDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP---GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ---- 135 (237)
T ss_pred eehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC---CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC----
Confidence 98642 345678999999998775 699999987432 11111111 1223444444 444444444
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ + |+|||++||+++. + ..+|++++|+
T Consensus 136 -~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sH~~~~-~-~~~d~v~~l~ 210 (237)
T cd03252 136 -GAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-A-GRTVIIIAHRLST-V-KNADRIIVME 210 (237)
T ss_pred -CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-H-HhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999986 4 8999999999974 5 5699999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|++++.|+++++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999987754
No 216
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-42 Score=351.52 Aligned_cols=219 Identities=26% Similarity=0.423 Sum_probs=183.2
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|+++++. +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 5 ~~l~~~~l~~~~~---------------~~~-~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~ 66 (272)
T PRK15056 5 AGIVVNDVTVTWR---------------NGH-TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISI 66 (272)
T ss_pred ceEEEEeEEEEec---------------CCc-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEE
Confidence 3699999999982 224 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCC--CCCCHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLF--PLLTVKETLMYSARLRL---HVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTv~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
+|+++.....++.++|++|++.+. ...+++|++.++..... .......+++++++++.+||.+..++.+ .
T Consensus 67 ~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 141 (272)
T PRK15056 67 LGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----G 141 (272)
T ss_pred CCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----c
Confidence 999875332234699999997652 23578999876421100 1112234456788999999998888776 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|+++++ +|+
T Consensus 142 ~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~~-~~~~~~d~v~~~-~G~ 218 (272)
T PRK15056 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNLG-SVTEFCDYTVMV-KGT 218 (272)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEE-CCE
Confidence 8999999999999999999999999999999999999999999999975 4899999999997 488999999877 899
Q ss_pred EEEEcChhHH
Q 044112 252 VVHHGSLDLL 261 (610)
Q Consensus 252 iv~~g~~~~~ 261 (610)
+++.|+++++
T Consensus 219 i~~~g~~~~~ 228 (272)
T PRK15056 219 VLASGPTETT 228 (272)
T ss_pred EEeecCHHhc
Confidence 9999998765
No 217
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-43 Score=323.88 Aligned_cols=219 Identities=28% Similarity=0.468 Sum_probs=196.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++||.++| +.. .+|++||++.+.|+++.|+|.|||||||+|+||.=+.+|. .|.|.+
T Consensus 5 ~~l~v~dlHK~~----------------G~~-eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~--~G~I~v 65 (256)
T COG4598 5 NALEVEDLHKRY----------------GEH-EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS--AGSIRV 65 (256)
T ss_pred cceehhHHHhhc----------------ccc-hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCC--CceEEE
Confidence 468889999988 666 8999999999999999999999999999999999998877 999999
Q ss_pred CCEeCCh----------------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc
Q 044112 97 NEQPMNI----------------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV 160 (610)
Q Consensus 97 ~g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 160 (610)
||+++.. ..+|...|+|+|+.++++.+||.||+.-+..--++.++.+..++++.+|+.+||.+.
T Consensus 66 ~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek 145 (256)
T COG4598 66 NGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK 145 (256)
T ss_pred CCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh
Confidence 9987521 235566899999999999999999998775433455778888999999999999988
Q ss_pred ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 161 ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 161 ~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
++.+ |..|||||+||++|||||+.+|+++++|||||.|||.-.-++++.++++|+ .|+|.+++||.+.. .-+.
T Consensus 146 ~~~Y-----P~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM~F-AR~V 218 (256)
T COG4598 146 ADAY-----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEMGF-ARDV 218 (256)
T ss_pred hhcC-----ccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeehhH-HHhh
Confidence 8765 469999999999999999999999999999999999999999999999996 59999999999986 6788
Q ss_pred cceEEEeeCCeEEEEcChhHH
Q 044112 241 FDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~~~~ 261 (610)
..+|+.|++|.+-.+|+|+++
T Consensus 219 ss~v~fLh~G~iEE~G~P~qv 239 (256)
T COG4598 219 SSHVIFLHQGKIEEEGPPEQV 239 (256)
T ss_pred hhheEEeecceecccCChHHH
Confidence 999999999999999999875
No 218
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-41 Score=346.05 Aligned_cols=223 Identities=26% Similarity=0.344 Sum_probs=187.1
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---Ccee
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSG 92 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G 92 (610)
...+.++++++.+ +++ .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +.+|
T Consensus 6 ~~~~~~~~~~~~~----------------~~~-~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G 68 (261)
T PRK14263 6 PIVMDCKLDKIFY----------------GNF-MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEG 68 (261)
T ss_pred CceEEEEeEEEEe----------------CCE-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCce
Confidence 4568899999988 444 7999999999999999999999999999999999998751 2489
Q ss_pred EEEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccC
Q 044112 93 SVLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGG 167 (610)
Q Consensus 93 ~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 167 (610)
+|.++|+++.. ..+++.++|++|++.++ .+|++||+.++...+. ...+.+++++++++.++|.+..+... +
T Consensus 69 ~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~-~ 144 (261)
T PRK14263 69 HVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR--YKGDLGDRVKHALQGAALWDEVKDKL-K 144 (261)
T ss_pred EEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC--chHHHHHHHHHHHHHcCCchhhhhhh-h
Confidence 99999998732 23567799999999887 5899999998865432 12234567889999999865332222 1
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
..++.||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|++++ + ++|||+++|+++ ++.+++|++++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~-~~tii~isH~~~-~i~~~~d~v~~l 221 (261)
T PRK14263 145 VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-K-DYTIALVTHNMQ-QAIRVADTTAFF 221 (261)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 3457999999999999999999999999999999999999999999999985 3 689999999998 488999999999
Q ss_pred e--------CCeEEEEcChhHHH
Q 044112 248 S--------KGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~--------~G~iv~~g~~~~~~ 262 (610)
+ +|+++..|+++++.
T Consensus 222 ~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 222 SVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred ecccccccCCceEEEeCCHHHHH
Confidence 6 89999999988753
No 219
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.5e-41 Score=332.32 Aligned_cols=191 Identities=53% Similarity=0.850 Sum_probs=166.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC--CCCCceeEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI--PLRRVSGSV 94 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~--~~~~~~G~I 94 (610)
..|+++|+++.|... +....+ .+|+|+|+++++||+++|+||||||||||+++|+|+. +|. +|+|
T Consensus 2 ~~l~~~~ls~~~~~~----------~~~~~~-~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~--~G~i 68 (194)
T cd03213 2 VTLSFRNLTVTVKSS----------PSKSGK-QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV--SGEV 68 (194)
T ss_pred cEEEEEeeEEEEecC----------CCcccc-cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC--ceEE
Confidence 358899999999410 000124 7999999999999999999999999999999999998 766 9999
Q ss_pred EECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 95 LVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 95 ~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
.++|+++.....++.++|++|++.+++.+|++||+.+..+.+ .||
T Consensus 69 ~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-----------------------------------~LS 113 (194)
T cd03213 69 LINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-----------------------------------GLS 113 (194)
T ss_pred EECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-----------------------------------cCC
Confidence 999998865456678999999999999999999997653210 599
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++.++.+.+|++++|++|++++
T Consensus 114 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 114 GGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 9999999999999999999999999999999999999999999875 489999999999745778999999999999987
Q ss_pred Ec
Q 044112 255 HG 256 (610)
Q Consensus 255 ~g 256 (610)
.|
T Consensus 193 ~~ 194 (194)
T cd03213 193 FG 194 (194)
T ss_pred cC
Confidence 64
No 220
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=356.44 Aligned_cols=225 Identities=21% Similarity=0.367 Sum_probs=188.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC---CCceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL---RRVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~---~~~~G~ 93 (610)
..|+++|++++|.. +.+ .+|+|+|+++++||++||+|||||||||||++|+|+.++ .+.+|+
T Consensus 79 ~~i~~~nls~~y~~--------------~~~-~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~ 143 (329)
T PRK14257 79 NVFEIRNFNFWYMN--------------RTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE 143 (329)
T ss_pred ceEEEEeeEEEecC--------------CCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 46999999999931 223 699999999999999999999999999999999999853 134899
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCCcccccccccC
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG-LNRAKARVSELLKELGLEHVANVRIGG 167 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~ 167 (610)
|.++|+++.. ..+++.++||||++.+++ .|++||+.|+.... ... .+..++.++++++.++|.+..++.++
T Consensus 144 I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~- 220 (329)
T PRK14257 144 IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN-GINDRKILEKIVEKSLKSAALWDEVKDDLD- 220 (329)
T ss_pred EEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc-CCChHHHHHHHHHHHHHHcCCcchhhhhhh-
Confidence 9999999852 345778999999999886 79999999875432 112 22234457888999988644344442
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||+++ .+.+.+|++++|
T Consensus 221 ~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l~-~i~~~~Driivl 297 (329)
T PRK14257 221 KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSMA-QAQRISDETVFF 297 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 45689999999999999999999999999999999999999999999999863 689999999998 478889999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+++++.
T Consensus 298 ~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 298 YQGWIEEAGETKTIF 312 (329)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998864
No 221
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.3e-42 Score=389.44 Aligned_cols=214 Identities=27% Similarity=0.415 Sum_probs=183.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++++||++.+. +++ .+|+|+|+++++||.+||+||||||||||+++|+|++ |. +|+|.+
T Consensus 348 ~~i~~~~vsf~~~---------------~~~-~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~--~G~I~i 408 (588)
T PRK11174 348 VTIEAEDLEILSP---------------DGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY--QGSLKI 408 (588)
T ss_pred ceEEEEeeEEecc---------------CCC-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC--CcEEEE
Confidence 3599999997662 234 6999999999999999999999999999999999999 75 899999
Q ss_pred CCEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||+++. .+.+|+.++||+|++.+|+. |++|||.++.. ..+ +++++++++..++.+ -.||.+|
T Consensus 409 ~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~---~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 409 NGIELRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP---DAS----DEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCEecccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC---CCC----HHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 999875 36788999999999999986 99999998621 112 244555566655543 4577886
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. .++|+|+++|+++ ..+.+|+|++
T Consensus 481 -e~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl~--~i~~aD~Iiv 555 (588)
T PRK11174 481 -DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQLE--DLAQWDQIWV 555 (588)
T ss_pred -cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecChH--HHHhCCEEEE
Confidence 4567899999999999999999999999999999999999999999999885 4799999999996 4678999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|+++..|+.+++.
T Consensus 556 l~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 556 MQDGQIVQQGDYAELS 571 (588)
T ss_pred EeCCeEeecCCHHHHH
Confidence 9999999999988865
No 222
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-41 Score=346.53 Aligned_cols=217 Identities=27% Similarity=0.391 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
+|+++||++++ +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+.++. +.+|+|
T Consensus 10 ~l~i~~v~~~~----------------~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 72 (264)
T PRK14243 10 VLRTENLNVYY----------------GSF-LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72 (264)
T ss_pred EEEEeeeEEEE----------------CCE-EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE
Confidence 69999999998 334 6999999999999999999999999999999999997531 248999
Q ss_pred EECCEeCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc----cccccc
Q 044112 95 LVNEQPMN-----ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH----VANVRI 165 (610)
Q Consensus 95 ~~~g~~~~-----~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 165 (610)
.++|+++. ....++.++|++|++.+++. ||+||+.+....+. .. .+.+++++++++.+++.+ ..++
T Consensus 73 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-- 147 (264)
T PRK14243 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARING-YK-GDMDELVERSLRQAALWDEVKDKLKQ-- 147 (264)
T ss_pred EECCEEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcC-cc-hHHHHHHHHHHHHhCchhhHHHHhcC--
Confidence 99999863 13456779999999988884 99999998764321 11 223456777888888743 2333
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
.+..||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++||+++
T Consensus 148 ---~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~~-~~~~~~d~v~ 221 (264)
T PRK14243 148 ---SGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQ-QAARVSDMTA 221 (264)
T ss_pred ---CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCHH-HHHHhCCEEE
Confidence 3469999999999999999999999999999999999999999999999964 479999999998 5899999999
Q ss_pred Eee---------CCeEEEEcChhHHH
Q 044112 246 LLS---------KGTVVHHGSLDLLE 262 (610)
Q Consensus 246 ~L~---------~G~iv~~g~~~~~~ 262 (610)
+|+ +|+++..|+++++.
T Consensus 222 ~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 222 FFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEecccccccccCceEEEeCCHHHHH
Confidence 998 79999999988763
No 223
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-41 Score=335.54 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=174.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 1 ~l~~~~l~~~~----------------~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~--~G~v~~~ 61 (204)
T PRK13538 1 MLEARNLACER----------------DER-ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD--AGEVLWQ 61 (204)
T ss_pred CeEEEEEEEEE----------------CCE-EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEC
Confidence 47899999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 98 EQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|+++.. ...++.++|++|++.+++.+|++||+.+....+. .+.+++++++++.+||.+..++.+ +.|||
T Consensus 62 g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 132 (204)
T PRK13538 62 GEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG----PGDDEALWEALAQVGLAGFEDVPV-----RQLSA 132 (204)
T ss_pred CEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC----ccHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 998743 3456779999999999999999999998765431 123467889999999988777766 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +.+..+|++.+
T Consensus 133 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecChhh-hccCCceEEec
Confidence 999999999999999999999999999999999999999999874 58899999999984 66666777666
No 224
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=331.68 Aligned_cols=189 Identities=44% Similarity=0.726 Sum_probs=164.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|+++.|... .+.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.++.+.+|+|.++
T Consensus 3 ~l~~~~l~~~~~~~------------~~~~-~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~ 69 (192)
T cd03232 3 VLTWKNLNYTVPVK------------GGKR-QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILIN 69 (192)
T ss_pred EEEEeeeEEEecCC------------CCce-EeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEEC
Confidence 58899999999310 0124 6999999999999999999999999999999999986422349999999
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
|+++. ...++.++|++|++.+++.+||+||+.++...+ +|||||
T Consensus 70 g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------~LSgGe 113 (192)
T cd03232 70 GRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-----------------------------------GLSVEQ 113 (192)
T ss_pred CEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-----------------------------------cCCHHH
Confidence 99875 455678999999999999999999998753210 599999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC-CeEEEEc
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK-GTVVHHG 256 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~iv~~g 256 (610)
|||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++.++.+.+|++++|++ |++++.|
T Consensus 114 ~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 114 RKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred hHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999999999999999875 5899999999997446789999999999 9999865
No 225
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.2e-41 Score=379.32 Aligned_cols=218 Identities=24% Similarity=0.403 Sum_probs=187.4
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+.+|++.+|+|.++|
T Consensus 2 l~i~~l~~~~----------------~~~-~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g 64 (500)
T TIGR02633 2 LEMKGIVKTF----------------GGV-KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSG 64 (500)
T ss_pred EEEEeEEEEe----------------CCe-EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 7899999998 334 69999999999999999999999999999999999987622489999999
Q ss_pred EeCChh----cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccc-cccccCCCC
Q 044112 99 QPMNIT----QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVA-NVRIGGESS 170 (610)
Q Consensus 99 ~~~~~~----~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~ 170 (610)
+++... ..++.++||+|++.+++.+||+||+.++...... ...++.+++++++++.+||.+.. ++.+
T Consensus 65 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 139 (500)
T TIGR02633 65 SPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV----- 139 (500)
T ss_pred EECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----
Confidence 987531 1346799999999999999999999987543211 12334456789999999998654 4545
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|
T Consensus 140 ~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~~-~~~~~~d~i~~l~~G 217 (500)
T TIGR02633 140 GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLN-EVKAVCDTICVIRDG 217 (500)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHH-HHHHhCCEEEEEeCC
Confidence 58999999999999999999999999999999999999999999999975 5899999999998 488899999999999
Q ss_pred eEEEEcChhH
Q 044112 251 TVVHHGSLDL 260 (610)
Q Consensus 251 ~iv~~g~~~~ 260 (610)
+++..|++++
T Consensus 218 ~i~~~~~~~~ 227 (500)
T TIGR02633 218 QHVATKDMST 227 (500)
T ss_pred eEeeecCccc
Confidence 9999988764
No 226
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.8e-41 Score=380.19 Aligned_cols=226 Identities=22% Similarity=0.352 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---CceeEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSGSV 94 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G~I 94 (610)
+|+++|++++|.. ..+.+ .+|+|+|+++++||++||+||||||||||+|+|+|+++|. +.+|+|
T Consensus 5 ~l~~~~l~~~~~~------------~~~~~-~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i 71 (529)
T PRK15134 5 LLAIENLSVAFRQ------------QQTVR-TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI 71 (529)
T ss_pred eEEEeceEEEecC------------CCCce-eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE
Confidence 5999999999931 00123 7999999999999999999999999999999999999762 248999
Q ss_pred EECCEeCCh---h---ccc-ceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc---ccc
Q 044112 95 LVNEQPMNI---T---QFR-RISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH---VAN 162 (610)
Q Consensus 95 ~~~g~~~~~---~---~~~-~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~ 162 (610)
.++|+++.. . ..+ +.+||++|++. +++.+|++|++.+........+..+.+++++++++.+||.+ ..+
T Consensus 72 ~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 151 (529)
T PRK15134 72 RFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLT 151 (529)
T ss_pred EECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHh
Confidence 999998742 1 122 57999999974 67778999999875433212234455678999999999975 346
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+++ .+|||||||||+||+||+.+|++|+|||||+|||+.++..++++|++++++.|+|||++||+++ .+.++||
T Consensus 152 ~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d 225 (529)
T PRK15134 152 DYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLAD 225 (529)
T ss_pred hCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcC
Confidence 655 6999999999999999999999999999999999999999999999997655899999999998 4788999
Q ss_pred eEEEeeCCeEEEEcChhHHH
Q 044112 243 QILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~~~~ 262 (610)
++++|++|++++.|+++++.
T Consensus 226 ri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 226 RVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999987653
No 227
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=368.23 Aligned_cols=234 Identities=29% Similarity=0.443 Sum_probs=199.1
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
....++++||++.|..+.. +. .+..+.. .+++||||++++||++||+|+||||||||.|+|+|+.+|. +|+|
T Consensus 277 ~~~ll~V~~l~k~y~~~~~----~~-~~~~~~~-~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~--~G~i 348 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKG----LF-VRERGEV-KAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS--SGSI 348 (539)
T ss_pred cCceeEeeeeeeeeccccc----cc-cccccce-eeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceE
Confidence 3456889999999964321 00 0112233 7999999999999999999999999999999999999986 9999
Q ss_pred EECCEeCC--h---hcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-ccccccc
Q 044112 95 LVNEQPMN--I---TQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIG 166 (610)
Q Consensus 95 ~~~g~~~~--~---~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 166 (610)
.++|.+.+ . ...++.+-+|+||+ .+.|.+||++++......+......+.++++.++++..||.. .+++
T Consensus 349 ~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r--- 425 (539)
T COG1123 349 IFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR--- 425 (539)
T ss_pred EEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc---
Confidence 99998732 1 23556778888886 589999999999998876554445566778999999999985 3454
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+|++||||||||++|||||+.+|+++++|||||.||+..+.+++++|+++.++.|.|.|++|||++. +..+||||++
T Consensus 426 --yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~v 502 (539)
T COG1123 426 --YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAV 502 (539)
T ss_pred --CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEE
Confidence 4589999999999999999999999999999999999999999999999999999999999999985 8999999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++|..|+.+++.
T Consensus 503 m~~G~iVE~G~~~~v~ 518 (539)
T COG1123 503 MYDGRIVEEGPTEKVF 518 (539)
T ss_pred EECCeEEEeCCHHHHh
Confidence 9999999999887653
No 228
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.8e-41 Score=379.51 Aligned_cols=220 Identities=30% Similarity=0.408 Sum_probs=188.3
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC--CCCCceeEEEE
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI--PLRRVSGSVLV 96 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~--~~~~~~G~I~~ 96 (610)
|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+. +|+ +|+|.+
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~--~G~i~~ 61 (520)
T TIGR03269 1 IEVKNLTKKF----------------DGK-EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT--SGRIIY 61 (520)
T ss_pred CEEEEEEEEE----------------CCe-EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC--ceEEEE
Confidence 4789999998 334 7999999999999999999999999999999999997 455 899999
Q ss_pred C-----------------------CEeC----------Ch---hcccceEEEEccC-CCCCCCCCHHHHHHHHHHhcCCC
Q 044112 97 N-----------------------EQPM----------NI---TQFRRISGYVTQD-EVLFPLLTVKETLMYSARLRLHV 139 (610)
Q Consensus 97 ~-----------------------g~~~----------~~---~~~~~~~~yv~Q~-~~l~~~lTv~E~l~~~~~~~~~~ 139 (610)
+ |.++ .. ...++.++|++|+ +.+++.+||+||+.+..... ..
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~ 140 (520)
T TIGR03269 62 HVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GY 140 (520)
T ss_pred eccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CC
Confidence 7 2221 00 1245679999997 67888899999999876532 22
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044112 140 GLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMA 219 (610)
Q Consensus 140 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la 219 (610)
+.++.+++++++++.+||++..++.+ ++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++
T Consensus 141 ~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~ 215 (520)
T TIGR03269 141 EGKEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAV 215 (520)
T ss_pred CHHHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHH
Confidence 34445678999999999988877766 5999999999999999999999999999999999999999999999997
Q ss_pred HhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHH
Q 044112 220 VKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHR 264 (610)
Q Consensus 220 ~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~ 264 (610)
++.|+|||++|||++. +.++||++++|++|++++.|++++..+.
T Consensus 216 ~~~g~tviivtHd~~~-~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 216 KASGISMVLTSHWPEV-IEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HhcCcEEEEEeCCHHH-HHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 6668999999999984 7889999999999999999998876554
No 229
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-41 Score=381.22 Aligned_cols=231 Identities=25% Similarity=0.380 Sum_probs=190.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++|+++.|..+... ..++.+.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++ . +|+|.+
T Consensus 274 ~~l~~~~l~~~~~~~~~~-----~~~~~~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~--~G~i~~ 344 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGI-----LKRTVDHN-VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-S--QGEIWF 344 (529)
T ss_pred CcccccCcEEEeecCccc-----cccccccc-eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-C--CcEEEE
Confidence 369999999998310000 00000124 69999999999999999999999999999999999985 4 899999
Q ss_pred CCEeCCh---h---cccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCc-cccccccc
Q 044112 97 NEQPMNI---T---QFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLH-VGLNRAKARVSELLKELGLE-HVANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~---~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 166 (610)
+|+++.. . .+++.++|++|++ .+++.+||+||+.++...+.. .+..+.+++++++++.+||. +..++.+
T Consensus 345 ~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 423 (529)
T PRK15134 345 DGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYP- 423 (529)
T ss_pred CCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCC-
Confidence 9988642 1 2356799999996 488889999999987543211 12334456789999999997 4677766
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
++|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++.|+|||++||+++ .+.++||++++
T Consensus 424 ----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~ 498 (529)
T PRK15134 424 ----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIV 498 (529)
T ss_pred ----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEE
Confidence 6999999999999999999999999999999999999999999999998656899999999998 48889999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|+++..|+++++.
T Consensus 499 l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 499 LRQGEVVEQGDCERVF 514 (529)
T ss_pred EECCEEEEEcCHHHHh
Confidence 9999999999987763
No 230
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-41 Score=344.38 Aligned_cols=220 Identities=26% Similarity=0.389 Sum_probs=184.3
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCC---cee
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRR---VSG 92 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~---~~G 92 (610)
+..|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|.+ .+|
T Consensus 14 ~~~l~~~~l~~~~----------------~~~-~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG 76 (265)
T PRK14252 14 QQKSEVNKLNFYY----------------GGY-QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG 76 (265)
T ss_pred CceEEEEEEEEEE----------------CCe-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCccc
Confidence 4569999999998 334 69999999999999999999999999999999999987521 489
Q ss_pred EEEECCEeCC-------hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc----ccc
Q 044112 93 SVLVNEQPMN-------ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE----HVA 161 (610)
Q Consensus 93 ~I~~~g~~~~-------~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~ 161 (610)
+|.++|++++ ...+++.++|++|++.+++. ||+||+.+.............+++++++++.+++. +..
T Consensus 77 ~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~ 155 (265)
T PRK14252 77 EIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRL 155 (265)
T ss_pred EEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHH
Confidence 9999998653 12356779999999998886 99999998754321111222345678888888874 233
Q ss_pred cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 162 NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 162 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
++. +..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+++
T Consensus 156 ~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~~-~~~~~~ 227 (265)
T PRK14252 156 GDL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNMQ-QAARVS 227 (265)
T ss_pred hCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCHH-HHHHhC
Confidence 443 469999999999999999999999999999999999999999999999863 589999999997 488899
Q ss_pred ceEEEeeCCeEEEEcChhHH
Q 044112 242 DQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 242 D~v~~L~~G~iv~~g~~~~~ 261 (610)
|++++|++|+++..|+.++.
T Consensus 228 d~i~~l~~G~i~~~g~~~~~ 247 (265)
T PRK14252 228 DYTAYMYMGELIEFGATDTI 247 (265)
T ss_pred CEEEEEECCEEEEeCCHHHH
Confidence 99999999999999998765
No 231
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=8.4e-42 Score=340.37 Aligned_cols=209 Identities=33% Similarity=0.582 Sum_probs=174.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+.. +.+ .+++|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|
T Consensus 3 l~~~~l~~~~~~--------------~~~-~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g 65 (220)
T cd03245 3 IEFRNVSFSYPN--------------QEI-PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDG 65 (220)
T ss_pred EEEEEEEEEcCC--------------CCc-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCeEEECC
Confidence 789999999820 123 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc------CCC
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG------GES 169 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~ 169 (610)
+++.. ...++.++|++|++.+++ .||.||+.+.... . .++++.++++.+++.+..++.+. ...
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 137 (220)
T cd03245 66 TDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL----A---DDERILRAAELAGVTDFVNKHPNGLDLQIGER 137 (220)
T ss_pred EEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC----C---CHHHHHHHHHHcCcHHHHHhccccccceecCC
Confidence 98642 334567999999998887 6999999764211 1 12346678888898876665431 123
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++. + +++|++++|++
T Consensus 138 ~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~~~-~-~~~d~v~~l~~ 213 (220)
T cd03245 138 GRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSL-L-DLVDRIIVMDS 213 (220)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHHH-H-HhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999999864 3899999999973 4 79999999999
Q ss_pred CeEEEEc
Q 044112 250 GTVVHHG 256 (610)
Q Consensus 250 G~iv~~g 256 (610)
|++++.|
T Consensus 214 g~i~~~~ 220 (220)
T cd03245 214 GRIVADG 220 (220)
T ss_pred CeEeecC
Confidence 9998654
No 232
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-41 Score=415.19 Aligned_cols=225 Identities=27% Similarity=0.398 Sum_probs=201.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-+|+++||+++|.. +.+ .+|+|+|+.+++||++||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 1936 ~~L~v~nLsK~Y~~--------------~~~-~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~pt--sG~I~i 1998 (2272)
T TIGR01257 1936 DILRLNELTKVYSG--------------TSS-PAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVT--SGDATV 1998 (2272)
T ss_pred ceEEEEEEEEEECC--------------CCc-eEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEEE
Confidence 36999999999920 124 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 97 NEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 97 ~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
+|+++.. .+.++.+||++|++.+++.+||+|++.+.++++. .+.++.+++++++++.+||.+.+|+++ ++||
T Consensus 1999 ~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g-~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LS 2072 (2272)
T TIGR01257 1999 AGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG-VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYS 2072 (2272)
T ss_pred CCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCC
Confidence 9998742 3456789999999999999999999999877653 234445677899999999999999887 5999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
|||||||+||+||+.+|+|++|||||+|||+.+++.+++.|+++++ .|+|||++||+++ ++.++|||+++|++|+++.
T Consensus 2073 GGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~ 2150 (2272)
T TIGR01257 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAVVLTSHSME-ECEALCTRLAIMVKGAFQC 2150 (2272)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999998 6899999999999999999
Q ss_pred EcChhHHHHHHH
Q 044112 255 HGSLDLLEHRLR 266 (610)
Q Consensus 255 ~g~~~~~~~~~~ 266 (610)
.|+++++.+.+.
T Consensus 2151 ~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2151 LGTIQHLKSKFG 2162 (2272)
T ss_pred ECCHHHHHHHhC
Confidence 999999887664
No 233
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.1e-42 Score=343.65 Aligned_cols=215 Identities=31% Similarity=0.509 Sum_probs=176.5
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++.. .++ .+++|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 1 i~~~~l~~~~~~--------------~~~-~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g 63 (234)
T cd03251 1 VEFKNVTFRYPG--------------DGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD--SGRILIDG 63 (234)
T ss_pred CEEEEEEEEeCC--------------CCc-cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCC--CCEEEECC
Confidence 468999999831 113 6899999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCC
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAK-----ARVSELLKEL--GLEHVANVRIGGE 168 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~ 168 (610)
+++.. ...++.++|++|++.+++ .||+||+.+.... ....+.. ..++++++.+ ++.+..+..+
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--- 136 (234)
T cd03251 64 HDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVIGERG--- 136 (234)
T ss_pred EEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCC---
Confidence 88642 345677999999998887 6999999875321 1111111 1245556665 5665555444
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++. +. .||++++|+
T Consensus 137 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~~-~~d~v~~l~ 210 (234)
T cd03251 137 --VKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM-K-NRTTFVIAHRLST-IE-NADRIVVLE 210 (234)
T ss_pred --CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH-Hh-hCCEEEEec
Confidence 6999999999999999999999999999999999999999999999985 3 7899999999974 65 499999999
Q ss_pred CCeEEEEcChhHHHH
Q 044112 249 KGTVVHHGSLDLLEH 263 (610)
Q Consensus 249 ~G~iv~~g~~~~~~~ 263 (610)
+|+++..|+++++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (234)
T cd03251 211 DGKIVERGTHEELLA 225 (234)
T ss_pred CCeEeeeCCHHHHHH
Confidence 999999999877643
No 234
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.5e-41 Score=378.40 Aligned_cols=226 Identities=27% Similarity=0.429 Sum_probs=189.5
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++||+++|... ..+.+ .+|+|+||++++||+++|+||||||||||+|+|+|+++|+ +|+|.
T Consensus 277 ~~~l~~~~l~~~~~~~-----------~~~~~-~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~--~G~i~ 342 (520)
T TIGR03269 277 EPIIKVRNVSKRYISV-----------DRGVV-KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPT--SGEVN 342 (520)
T ss_pred CceEEEeccEEEeccC-----------CCCCc-eEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEE
Confidence 3469999999998310 01223 6999999999999999999999999999999999999876 99999
Q ss_pred EC-CEe---CCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-----c
Q 044112 96 VN-EQP---MNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-----V 160 (610)
Q Consensus 96 ~~-g~~---~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~ 160 (610)
++ |.+ +.. ...++.++|++|++.+++.+||+||+.+...+. .+.++.+++++++++.+||.+ .
T Consensus 343 ~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~ 420 (520)
T TIGR03269 343 VRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE--LPDELARMKAVITLKMVGFDEEKAEEI 420 (520)
T ss_pred EecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC--CCHHHHHHHHHHHHHhCCCCCccchhh
Confidence 96 642 211 123567999999999999999999999864332 123334567889999999975 4
Q ss_pred ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 161 ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 161 ~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
.++++ .+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++.|.|||++|||++ .+.++
T Consensus 421 ~~~~~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~ 494 (520)
T TIGR03269 421 LDKYP-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDV 494 (520)
T ss_pred hhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHh
Confidence 56655 6999999999999999999999999999999999999999999999997666899999999998 48899
Q ss_pred cceEEEeeCCeEEEEcChhHHHH
Q 044112 241 FDQILLLSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~~~~~~ 263 (610)
||++++|++|+++..|+++++.+
T Consensus 495 ~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 495 CDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999887643
No 235
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.5e-41 Score=391.99 Aligned_cols=212 Identities=33% Similarity=0.476 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|+. ..+ .+|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|.+|
T Consensus 451 ~I~~~nvsf~Y~~--------------~~~-~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~id 513 (686)
T TIGR03797 451 AIEVDRVTFRYRP--------------DGP-LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYD 513 (686)
T ss_pred eEEEEEEEEEcCC--------------CCc-cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEEC
Confidence 5999999999931 223 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 044112 98 EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIGG 167 (610)
Q Consensus 98 g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~ 167 (610)
|+++. ...+|+.+|||+||+.+|+. |++||+.++.. .+ ++++.++++..|+.+. .|+.+|
T Consensus 514 g~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~----~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ig- 583 (686)
T TIGR03797 514 GQDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP----LT----LDEAWEAARMAGLAEDIRAMPMGMHTVIS- 583 (686)
T ss_pred CEEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC----CC----HHHHHHHHHHcCcHHHHHhcccccccccc-
Confidence 99875 36788999999999999986 99999988522 12 3456677777777643 467775
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+++|++|+||||||+||+.+.+++.+.|+++ ++|+|+++|+++ ..+.+|+|++|
T Consensus 584 e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~~--~i~~~D~Iivl 657 (686)
T TIGR03797 584 EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRLS--TIRNADRIYVL 657 (686)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecChH--HHHcCCEEEEE
Confidence 456889999999999999999999999999999999999999999999875 479999999996 46789999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+.+++.
T Consensus 658 ~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 658 DAGRVVQQGTYDELM 672 (686)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998865
No 236
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=377.38 Aligned_cols=214 Identities=23% Similarity=0.356 Sum_probs=186.0
Q ss_pred EeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeC
Q 044112 22 KKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM 101 (610)
Q Consensus 22 ~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~ 101 (610)
+|++++| +++ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|+++
T Consensus 2 ~nl~~~~----------------~~~-~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~ 62 (491)
T PRK10982 2 SNISKSF----------------PGV-KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD--SGSILFQGKEI 62 (491)
T ss_pred CceEEEe----------------CCE-EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECCEEC
Confidence 6888888 334 7999999999999999999999999999999999999876 99999999987
Q ss_pred Ch----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 102 NI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH--VGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 102 ~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
.. ...++.++|++|++.+++.+||+||+.++...... ...++..++++++++.+|+.+..++.+ .+|||
T Consensus 63 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 137 (491)
T PRK10982 63 DFKSSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSV 137 (491)
T ss_pred CCCCHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 42 23456799999999999999999999876421111 123334567899999999988777776 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+++..
T Consensus 138 Gq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 138 SQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKME-EIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999975 5899999999997 58889999999999999999
Q ss_pred cChhHH
Q 044112 256 GSLDLL 261 (610)
Q Consensus 256 g~~~~~ 261 (610)
|++++.
T Consensus 216 ~~~~~~ 221 (491)
T PRK10982 216 QPLAGL 221 (491)
T ss_pred cChhhC
Confidence 987764
No 237
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.3e-41 Score=385.67 Aligned_cols=216 Identities=25% Similarity=0.433 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|++++|+. +.+ .+|+|+|+++++||.+||+||||||||||+|+|+|+++|+ +|+|.+|
T Consensus 341 ~i~~~~vsf~y~~--------------~~~-~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~--~G~I~i~ 403 (582)
T PRK11176 341 DIEFRNVTFTYPG--------------KEV-PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID--EGEILLD 403 (582)
T ss_pred eEEEEEEEEecCC--------------CCC-ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC--CceEEEC
Confidence 5999999999931 223 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-------HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~ 167 (610)
|.+++. ..+++.++||+||+.+|+. |++||+.++.. + +..+++++++++..|+. +-.|+.+|
T Consensus 404 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~---~---~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig- 475 (582)
T PRK11176 404 GHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART---E---QYSREQIEEAARMAYAMDFINKMDNGLDTVIG- 475 (582)
T ss_pred CEEhhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC---C---CCCHHHHHHHHHHhCcHHHHHhcccccCceeC-
Confidence 998753 5678899999999999985 99999987521 1 11234566677776654 33577886
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+....||||||||++|||||+++|++++||||||+||+.++..+++.|+++. .++|+|++||+++ ..+.||+|++|
T Consensus 476 ~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~~--~~~~~D~Ii~l 551 (582)
T PRK11176 476 ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRLS--TIEKADEILVV 551 (582)
T ss_pred CCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEEEEE
Confidence 4467899999999999999999999999999999999999999999999875 3699999999995 56889999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+.+++.
T Consensus 552 ~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 552 EDGEIVERGTHAELL 566 (582)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998764
No 238
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1.2e-41 Score=343.32 Aligned_cols=216 Identities=31% Similarity=0.487 Sum_probs=172.8
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
++++|+++.+.. .+.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 1 l~i~~l~~~~~~-------------~~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g 64 (238)
T cd03249 1 IEFKNVSFRYPS-------------RPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT--SGEILLDG 64 (238)
T ss_pred CeEEEEEEecCC-------------CCCc-cceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC--CCEEEECC
Confidence 468999998831 1123 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCC
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKA-----RVSELLKEL--GLEHVANVRIGGE 168 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~ 168 (610)
.++.. ...++.++|++|++.+++ .||+||+.+....+ ..++..+ .+.++++.+ ++....++.
T Consensus 65 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 136 (238)
T cd03249 65 VDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA---TDEEVEEAAKKANIHDFIMSLPDGYDTLVGER---- 136 (238)
T ss_pred EehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC---CHHHHHHHHHHcChHHHHHhhccccceeeccC----
Confidence 88642 334567999999998876 69999998753211 1111111 122233333 343333333
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ .|+|||++||+++. +. .||++++|+
T Consensus 137 -~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~~~-~~-~~d~v~~l~ 211 (238)
T cd03249 137 -GSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRLST-IR-NADLIAVLQ 211 (238)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCHHH-Hh-hCCEEEEEE
Confidence 47999999999999999999999999999999999999999999999985 48999999999974 54 899999999
Q ss_pred CCeEEEEcChhHHHH
Q 044112 249 KGTVVHHGSLDLLEH 263 (610)
Q Consensus 249 ~G~iv~~g~~~~~~~ 263 (610)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999998876544
No 239
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-41 Score=376.36 Aligned_cols=215 Identities=25% Similarity=0.373 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++| +++ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.++
T Consensus 4 ~l~~~~l~~~~----------------~~~-~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~ 64 (501)
T PRK11288 4 YLSFDGIGKTF----------------PGV-KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILID 64 (501)
T ss_pred eEEEeeeEEEE----------------CCE-EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCEEEEC
Confidence 68999999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLR-LH-VGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~-~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++.. ..+++.++|++|++.+++.+||+||+.++.... .. ...++.+++++++++.+||.+..++.+ .
T Consensus 65 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 139 (501)
T PRK11288 65 GQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----K 139 (501)
T ss_pred CEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----h
Confidence 998742 234567999999999999999999999864211 11 123344567899999999987777766 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.++||++++|++|+
T Consensus 140 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~~-~~~~~~d~i~~l~~G~ 217 (501)
T PRK11288 140 YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRME-EIFALCDAITVFKDGR 217 (501)
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999975 5899999999998 5789999999999999
Q ss_pred EEEEcCh
Q 044112 252 VVHHGSL 258 (610)
Q Consensus 252 iv~~g~~ 258 (610)
++..++.
T Consensus 218 i~~~~~~ 224 (501)
T PRK11288 218 YVATFDD 224 (501)
T ss_pred EEeecCc
Confidence 9876653
No 240
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-41 Score=340.87 Aligned_cols=215 Identities=30% Similarity=0.476 Sum_probs=173.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|+++++. +.+ .+++|+|+++++||+++|+|||||||||||++|+|+.+|. +|+|.++
T Consensus 2 ~l~~~~l~~~~~---------------~~~-~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 63 (229)
T cd03254 2 EIEFENVNFSYD---------------EKK-PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ--KGQILID 63 (229)
T ss_pred eEEEEEEEEecC---------------CCC-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEEC
Confidence 478999999982 223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccc------cCC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRI------GGE 168 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~ 168 (610)
|.++.. ..+++.++|++|++.+++. ||+||+.+.... .. .+++++.++.+++.+..+... -+.
T Consensus 64 g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 135 (229)
T cd03254 64 GIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN---AT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGE 135 (229)
T ss_pred CEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC---CC----HHHHHHHHHHhChHHHHHhCcccccCHhhc
Confidence 988642 3456779999999988876 999999875321 11 122334444444433222210 012
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++ + |+|||++||+++. + ..+|++++|+
T Consensus 136 ~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~-~~~d~i~~l~ 211 (229)
T cd03254 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-K-GRTSIIIAHRLST-I-KNADKILVLD 211 (229)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH-H-hhCCEEEEEe
Confidence 347999999999999999999999999999999999999999999999985 4 8999999999974 5 5699999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|++++.|+.++..
T Consensus 212 ~g~~~~~~~~~~~~ 225 (229)
T cd03254 212 DGKIIEEGTHDELL 225 (229)
T ss_pred CCeEEEeCCHHHHH
Confidence 99999999876653
No 241
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.2e-42 Score=311.21 Aligned_cols=217 Identities=30% Similarity=0.463 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|.++|+++.| +.. ++|-|++++.++||.+.++||||||||||++.|.=+..|+ +|+..+.
T Consensus 2 sirv~~in~~y----------------g~~-q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~--sg~l~ia 62 (242)
T COG4161 2 SIQLNGINCFY----------------GAH-QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIA 62 (242)
T ss_pred ceEEccccccc----------------ccc-hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCC--CCeEEec
Confidence 47889999998 556 8999999999999999999999999999999999888776 9999998
Q ss_pred CEeCCh---------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 044112 98 EQPMNI---------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 98 g~~~~~---------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 168 (610)
|...+. .++|+.+|+|+|+..++|.+||.|||.-+..--.+.++++.+.++.++|+++.|.+.+|+..
T Consensus 63 ~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p--- 139 (242)
T COG4161 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--- 139 (242)
T ss_pred ccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCc---
Confidence 875431 35788899999999999999999999876532234477888899999999999999998754
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
-.|||||+|||+|||||+.+|++|++||||+.|||.-..+++++|++++ +.|.|=+++||..+. ..+.+.+|+.|.
T Consensus 140 --lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~-~tgitqvivthev~v-a~k~as~vvyme 215 (242)
T COG4161 140 --LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA-ETGITQVIVTHEVEV-ARKTASRVVYME 215 (242)
T ss_pred --eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHH-hcCceEEEEEeehhH-HHhhhhheEeee
Confidence 6999999999999999999999999999999999999999999999998 569999999999985 678999999999
Q ss_pred CCeEEEEcChhH
Q 044112 249 KGTVVHHGSLDL 260 (610)
Q Consensus 249 ~G~iv~~g~~~~ 260 (610)
+|+|+..|+.+.
T Consensus 216 ~g~ive~g~a~~ 227 (242)
T COG4161 216 NGHIVEQGDASC 227 (242)
T ss_pred cCeeEeecchhh
Confidence 999999998764
No 242
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=3.1e-41 Score=331.97 Aligned_cols=196 Identities=29% Similarity=0.432 Sum_probs=172.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++||++.+ +.+ .+|+|+|+++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 1 l~i~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 61 (201)
T cd03231 1 LEADELTCER----------------DGR-ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL--AGRVLLNG 61 (201)
T ss_pred CEEEEEEEEe----------------CCc-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 99 QPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 99 ~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+++.. ..+++.++|++|++.+++.+|++||+.+.... ..+++++++++.+|+.+..++++ +.||||
T Consensus 62 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 129 (201)
T cd03231 62 GPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-------HSDEQVEEALARVGLNGFEDRPV-----AQLSAG 129 (201)
T ss_pred EecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc-------ccHHHHHHHHHHcCChhhhcCch-----hhCCHH
Confidence 98642 34567899999999999999999999885321 12456789999999998777766 689999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|+|++||++. ++...+|+++.+
T Consensus 130 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 130 QQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCch-hhhhccceeEec
Confidence 99999999999999999999999999999999999999999864 5899999999997 478899999887
No 243
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=9.5e-41 Score=338.80 Aligned_cols=227 Identities=26% Similarity=0.327 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC--CCCCceeEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI--PLRRVSGSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~--~~~~~~G~I~ 95 (610)
+|+++||++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+. ++. +|+|.
T Consensus 1 ~i~~~nl~~~~----------------~~~-~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~--~G~i~ 61 (248)
T PRK09580 1 MLSIKDLHVSV----------------EDK-AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVT--GGTVE 61 (248)
T ss_pred CeEEEEEEEEe----------------CCe-eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCC--ceEEE
Confidence 37899999998 334 6999999999999999999999999999999999995 454 99999
Q ss_pred ECCEeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHH-hc-CCC----CHHHHHHHHHHHHHHcCCc-cccccc
Q 044112 96 VNEQPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSAR-LR-LHV----GLNRAKARVSELLKELGLE-HVANVR 164 (610)
Q Consensus 96 ~~g~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~-~~-~~~----~~~~~~~~v~~~l~~lgL~-~~~~~~ 164 (610)
++|+++.. .. .++.++|++|++.+++.+|+.+++.+... .+ ... ...+.+++++++++.+++. +..++.
T Consensus 62 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 141 (248)
T PRK09580 62 FKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS 141 (248)
T ss_pred ECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccC
Confidence 99987642 12 23569999999998888888877654321 11 000 1112345678899999995 445554
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cce
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL-FDQ 243 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~-~D~ 243 (610)
+. +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +... +|+
T Consensus 142 ~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~~~-~~~~~~d~ 215 (248)
T PRK09580 142 VN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDY 215 (248)
T ss_pred CC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-HHhhhCCE
Confidence 41 37999999999999999999999999999999999999999999999864 58999999999874 6665 899
Q ss_pred EEEeeCCeEEEEcChhHHHHHHHHcCC
Q 044112 244 ILLLSKGTVVHHGSLDLLEHRLRIAGH 270 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~~~~~~~~g~ 270 (610)
+++|++|++++.|+++.. +.+...++
T Consensus 216 i~~l~~g~i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 216 VHVLYQGRIVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence 999999999999998854 33343333
No 244
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-39 Score=375.08 Aligned_cols=219 Identities=32% Similarity=0.500 Sum_probs=185.3
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...++++||.++|+.+ ++. .||+|+|+.+++||.+||+|||||||||++++|.+++.|. +|+|.
T Consensus 348 ~g~ief~nV~FsYPsR-------------pdv-~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~--~G~V~ 411 (1228)
T KOG0055|consen 348 KGEIEFRNVCFSYPSR-------------PDV-KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT--SGEVL 411 (1228)
T ss_pred ccceEEEEEEecCCCC-------------Ccc-hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CceEE
Confidence 4469999999999532 233 7999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-------cCCcccccccc
Q 044112 96 VNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE-------LGLEHVANVRI 165 (610)
Q Consensus 96 ~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~-------lgL~~~~~~~v 165 (610)
+||.++.. +.+|+++|.|.|+|.+|.. |++||+.|+.. ..+.+ +++++.+. ..|.+-.+|.+
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvlF~~-tI~eNI~~G~~---dat~~----~i~~a~k~ana~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-TIRENIRYGKP---DATRE----EIEEAAKAANAHDFILKLPDGYDTLV 483 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhhhcc-cHHHHHhcCCC---cccHH----HHHHHHHHccHHHHHHhhHHhhcccc
Confidence 99999753 5688899999999988874 99999998631 11222 23333322 24556678888
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
|. ..-+||||||||++|||||+.||+|||||||||+||+.+...+.+.|++.. .|+|.|+++|+++. + +.+|+++
T Consensus 484 ge-~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRLSt-I-rnaD~I~ 558 (1228)
T KOG0055|consen 484 GE-RGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRLST-I-RNADKIA 558 (1228)
T ss_pred cC-CCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeehhh-h-hccCEEE
Confidence 74 445699999999999999999999999999999999999999999999875 48999999999983 5 6699999
Q ss_pred EeeCCeEEEEcChhHHHH
Q 044112 246 LLSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~~~ 263 (610)
+|++|++++.|+++|+.+
T Consensus 559 v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 559 VMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred EEECCEEEEecCHHHHHh
Confidence 999999999999999764
No 245
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.8e-41 Score=381.16 Aligned_cols=214 Identities=25% Similarity=0.423 Sum_probs=186.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++++|++++|+ +++ .+|+|+|+++++||.+||+|+||||||||+|+|+|+++|. +|+|.+
T Consensus 339 ~~i~~~~v~f~y~---------------~~~-~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i 400 (592)
T PRK10790 339 GRIDIDNVSFAYR---------------DDN-LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT--EGEIRL 400 (592)
T ss_pred CeEEEEEEEEEeC---------------CCC-ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CceEEE
Confidence 3599999999993 223 6999999999999999999999999999999999999987 999999
Q ss_pred CCEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||.+++ .+.++++++||+||+.+|+. |++||+.++. +.+ +++++++++..|+.+ -.|+.+|
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~----~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR----DIS----EEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC----CCC----HHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 999875 35788999999999999997 9999998863 112 345777888887664 3466675
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+.+|++++||||||+||+.+.+.+.+.|+++. .++|+|+++|+++ ..+.+|+|++
T Consensus 472 -e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~~--~l~~~D~ii~ 546 (592)
T PRK10790 472 -EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRLS--TIVEADTILV 546 (592)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEEEE
Confidence 3567899999999999999999999999999999999999999999999885 3689999999995 4678999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|+++..|+.+++.
T Consensus 547 l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 547 LHRGQAVEQGTHQQLL 562 (592)
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999874
No 246
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=6.4e-41 Score=340.77 Aligned_cols=203 Identities=25% Similarity=0.454 Sum_probs=176.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 4 ~l~~~~l~~~~----------------~~~-~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~ 64 (251)
T PRK09544 4 LVSLENVSVSF----------------GQR-RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD--EGVIKRN 64 (251)
T ss_pred EEEEeceEEEE----------------CCc-eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 58999999998 334 6999999999999999999999999999999999999876 9999998
Q ss_pred CEeCChhcccceEEEEccCCCCCCC--CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPL--LTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~--lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|. ..++|++|++.+++. .|+.|++.+.. . ..++++.++++.+||.+..++.+ ..|||
T Consensus 65 ~~--------~~i~~v~q~~~~~~~l~~~~~~~~~~~~----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSg 123 (251)
T PRK09544 65 GK--------LRIGYVPQKLYLDTTLPLTVNRFLRLRP----G----TKKEDILPALKRVQAGHLIDAPM-----QKLSG 123 (251)
T ss_pred Cc--------cCEEEeccccccccccChhHHHHHhccc----c----ccHHHHHHHHHHcCChHHHhCCh-----hhCCH
Confidence 72 359999999887775 47888765421 1 11345788999999998888766 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||+++ ++.+.+|++++|++ +++..
T Consensus 124 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~ 201 (251)
T PRK09544 124 GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCS 201 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEee
Confidence 99999999999999999999999999999999999999999987655899999999998 58899999999964 79999
Q ss_pred cChhHHH
Q 044112 256 GSLDLLE 262 (610)
Q Consensus 256 g~~~~~~ 262 (610)
|+++++.
T Consensus 202 g~~~~~~ 208 (251)
T PRK09544 202 GTPEVVS 208 (251)
T ss_pred CCHHHHh
Confidence 9987653
No 247
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-41 Score=322.91 Aligned_cols=171 Identities=36% Similarity=0.620 Sum_probs=155.6
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g 61 (173)
T cd03230 1 IEVRNLSKRY----------------GKK-TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD--SGEIKVLG 61 (173)
T ss_pred CEEEEEEEEE----------------CCe-eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECC
Confidence 4689999988 234 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 99 QPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 99 ~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+++.. ...++.++|++|++.+++.+|++||+. ||||
T Consensus 62 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~------------------------------------------LS~G 99 (173)
T cd03230 62 KDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------------------------------LSGG 99 (173)
T ss_pred EEcccchHhhhccEEEEecCCccccCCcHHHHhh------------------------------------------cCHH
Confidence 98743 345678999999999999999999973 9999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|+|++||+++ ++.+.+|++++|++|++
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999999999999999999765 899999999997 47789999999999974
No 248
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-40 Score=347.39 Aligned_cols=223 Identities=28% Similarity=0.431 Sum_probs=183.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC---CCceeE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL---RRVSGS 93 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~---~~~~G~ 93 (610)
.+|+++||++.+ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|++++ .+.+|+
T Consensus 44 ~~l~i~nl~~~~----------------~~~-~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~ 106 (305)
T PRK14264 44 AKLSVEDLDVYY----------------GDD-HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106 (305)
T ss_pred ceEEEEEEEEEe----------------CCe-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 469999999998 334 699999999999999999999999999999999999863 134999
Q ss_pred EEECCEeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC-----------CCC-HHHHHHHHHHHHHHcC
Q 044112 94 VLVNEQPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL-----------HVG-LNRAKARVSELLKELG 156 (610)
Q Consensus 94 I~~~g~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~-----------~~~-~~~~~~~v~~~l~~lg 156 (610)
|.++|+++.. ...++.++|++|++.+++ .||+||+.++...+. ... .+..+++++++++.++
T Consensus 107 I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 185 (305)
T PRK14264 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA 185 (305)
T ss_pred EEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC
Confidence 9999998642 235678999999998887 499999998754321 011 1223567889999998
Q ss_pred CcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH
Q 044112 157 LEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFR 236 (610)
Q Consensus 157 L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~ 236 (610)
+.+..+... +..++.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .
T Consensus 186 l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~~-~ 261 (305)
T PRK14264 186 LWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNMQ-Q 261 (305)
T ss_pred CchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCHH-H
Confidence 853221111 233479999999999999999999999999999999999999999999999874 489999999998 4
Q ss_pred HHHhcceE-EEeeCCeEEEEcChhHH
Q 044112 237 ILELFDQI-LLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 237 i~~~~D~v-~~L~~G~iv~~g~~~~~ 261 (610)
+.+++|++ ++|++|++++.|+++++
T Consensus 262 i~~~~d~i~~~l~~G~i~~~g~~~~~ 287 (305)
T PRK14264 262 AARISDQTAVFLTGGELVEYDDTDKI 287 (305)
T ss_pred HHHhcCEEEEEecCCEEEEeCCHHHH
Confidence 78899996 57899999999998765
No 249
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.9e-41 Score=331.47 Aligned_cols=199 Identities=26% Similarity=0.427 Sum_probs=172.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+++ +|+|.++
T Consensus 2 ~l~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 62 (207)
T PRK13539 2 MLEGEDLACVR----------------GGR-VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA--AGTIKLD 62 (207)
T ss_pred EEEEEeEEEEE----------------CCe-EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEC
Confidence 58999999998 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
|+++.....++.++|++|++.+++.+||+||+.+....+. . ..++++++++.+||.+..++.+ +.|||||
T Consensus 63 g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~-~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 132 (207)
T PRK13539 63 GGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG-G----EELDIAAALEAVGLAPLAHLPF-----GYLSAGQ 132 (207)
T ss_pred CEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC-C----cHHHHHHHHHHcCCHHHHcCCh-----hhcCHHH
Confidence 9886432356779999999988889999999988654421 1 1245789999999987777666 5899999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.. |+++.+..
T Consensus 133 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~~-~~~~--~~~~~~~~ 200 (207)
T PRK13539 133 KRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIPL-GLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCch-hhcc--CcEEeecC
Confidence 9999999999999999999999999999999999999999875 4899999999997 3554 88887744
No 250
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.6e-41 Score=336.27 Aligned_cols=192 Identities=30% Similarity=0.458 Sum_probs=164.8
Q ss_pred ccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCC
Q 044112 45 PPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLT 124 (610)
Q Consensus 45 ~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lT 124 (610)
+.+ ++|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++... ..+...+.+.+|
T Consensus 33 ~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~--~G~i~~~g~~~~~---------~~~~~~~~~~~t 100 (224)
T cd03220 33 GEF-WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD--SGTVTVRGRVSSL---------LGLGGGFNPELT 100 (224)
T ss_pred CCe-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECCEEchh---------hcccccCCCCCc
Confidence 345 7999999999999999999999999999999999999876 9999999987531 111234557799
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044112 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLD 204 (610)
Q Consensus 125 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD 204 (610)
|+||+.+....+ ....++.+++++++++.+||.+..++.+ ++||||||||++||++|+.+|++++|||||+|||
T Consensus 101 v~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~gLD 174 (224)
T cd03220 101 GRENIYLNGRLL-GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAVGD 174 (224)
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 999999876543 1223444567889999999998888776 5899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 205 SASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 205 ~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
+.++..+.+.|++++++ |+|||++||+++ ++.+++|++++|++|++++.|
T Consensus 175 ~~~~~~~~~~l~~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 175 AAFQEKCQRRLRELLKQ-GKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999998754 899999999997 478899999999999998765
No 251
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-41 Score=359.53 Aligned_cols=214 Identities=33% Similarity=0.531 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+|+||+++| +++++||+++||+|++||-+||+|+|||||||++|+|.+... . +|+|.+|
T Consensus 351 ~I~F~dV~f~y----------------~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~--sG~I~Id 411 (591)
T KOG0057|consen 351 SIEFDDVHFSY----------------GPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y--SGSILID 411 (591)
T ss_pred cEEEEeeEEEe----------------CCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c--CCcEEEC
Confidence 49999999999 334269999999999999999999999999999999999987 4 8999999
Q ss_pred CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 044112 98 EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIGG 167 (610)
Q Consensus 98 g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~ 167 (610)
|+++. .+.+|+.|||||||..||.. ||.+|+.|+.. ..+ .++|-++.++.|+.+. ..|.||
T Consensus 412 G~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~---sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VG- 482 (591)
T KOG0057|consen 412 GQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP---SAS----DEEVVEACKRAGLHDVISRLPDGYQTLVG- 482 (591)
T ss_pred CeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC---CcC----HHHHHHHHHHcCcHHHHHhccccchhhHh-
Confidence 99975 36789999999999999986 99999998732 112 3445666677666543 345565
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..|||||||||+||||++.||+|+++|||||.||..+..++++.+.+. ..|+|+|++.|+.+ ..+-||+|++|
T Consensus 483 erG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~IvH~l~--ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV--MSGRTVIMIVHRLD--LLKDFDKIIVL 558 (591)
T ss_pred hcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh--cCCCeEEEEEecch--hHhcCCEEEEE
Confidence 677899999999999999999999999999999999999999999999984 35899999999986 57899999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|++...|+.+++..
T Consensus 559 ~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 559 DNGTVKEYGTHSELLA 574 (591)
T ss_pred ECCeeEEeccHHHHhh
Confidence 9999999999998775
No 252
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=8.3e-41 Score=339.53 Aligned_cols=200 Identities=30% Similarity=0.497 Sum_probs=175.0
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCCCCCCCCHH
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
+|+|+|+++++||+++|+||||||||||+++|+|+.+ . +|+|.++|+++.. ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~--~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G--SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C--CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 6999999999999999999999999999999999984 3 8999999998742 33456789999999888889999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHh-------CCCEEEEeCC
Q 044112 127 ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVH-------DPAVLLIDEP 199 (610)
Q Consensus 127 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~-------~p~llllDEP 199 (610)
||+.+..... ...++.+++++++++.+||.+..++.+ +.||||||||++||++|+. +|++++||||
T Consensus 88 ~nl~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEP 160 (248)
T PRK03695 88 QYLTLHQPDK--TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEP 160 (248)
T ss_pred HHHHhcCccC--CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCC
Confidence 9998863221 122334567899999999988777766 5999999999999999998 6799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHH
Q 044112 200 TSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 200 tsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
|+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+++|++++|++|+++..|+.+++
T Consensus 161 t~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 161 MNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999975 5899999999997 48899999999999999999988765
No 253
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-41 Score=374.64 Aligned_cols=222 Identities=23% Similarity=0.405 Sum_probs=187.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC-CCceeEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL-RRVSGSVL 95 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~-~~~~G~I~ 95 (610)
.+|+++||++.|.. .+.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++| + +|+|.
T Consensus 258 ~~l~~~~l~~~~~~-------------~~~~-~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~--~G~i~ 321 (506)
T PRK13549 258 VILEVRNLTAWDPV-------------NPHI-KRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW--EGEIF 321 (506)
T ss_pred ceEEEecCcccccc-------------cccc-ccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC--CcEEE
Confidence 36899999988721 0223 699999999999999999999999999999999999874 5 89999
Q ss_pred ECCEeCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHHHHhcC-C---CCHHHHHHHHHHHHHHcCCc-ccccc
Q 044112 96 VNEQPMNI----TQFRRISGYVTQDE---VLFPLLTVKETLMYSARLRL-H---VGLNRAKARVSELLKELGLE-HVANV 163 (610)
Q Consensus 96 ~~g~~~~~----~~~~~~~~yv~Q~~---~l~~~lTv~E~l~~~~~~~~-~---~~~~~~~~~v~~~l~~lgL~-~~~~~ 163 (610)
++|++++. ...++.++|++|++ .+++.+||.||+.++..... . ...++.+++++++++.+|+. +..++
T Consensus 322 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 401 (506)
T PRK13549 322 IDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPEL 401 (506)
T ss_pred ECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccc
Confidence 99998742 22356799999995 47888999999987642111 1 12233456789999999996 56777
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
++ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.++|+++++ .|+|||++|||++ ++.++||+
T Consensus 402 ~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~~-~~~~~~d~ 474 (506)
T PRK13549 402 AI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELP-EVLGLSDR 474 (506)
T ss_pred cc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCHH-HHHHhCCE
Confidence 76 59999999999999999999999999999999999999999999999975 5899999999998 58899999
Q ss_pred EEEeeCCeEEEEcChhHH
Q 044112 244 ILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~ 261 (610)
+++|++|+++..|+++++
T Consensus 475 v~~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 475 VLVMHEGKLKGDLINHNL 492 (506)
T ss_pred EEEEECCEEEEEeccccC
Confidence 999999999999987764
No 254
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.5e-41 Score=379.53 Aligned_cols=216 Identities=33% Similarity=0.574 Sum_probs=187.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|++++|+. +++ .+|+|+|+++++||.+||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 337 ~~i~~~~v~f~y~~--------------~~~-~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~--~G~I~i 399 (574)
T PRK11160 337 VSLTLNNVSFTYPD--------------QPQ-PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ--QGEILL 399 (574)
T ss_pred CeEEEEEEEEECCC--------------CCC-cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEE
Confidence 46999999999931 123 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc------ccccccC
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV------ANVRIGG 167 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~vg~ 167 (610)
||++++. ..+|+.++||+|++.+|+. |++||+.++.. +..++++.++++..++++. .||.+|
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-------~~~~~~i~~al~~~~l~~~i~~p~GldT~vg- 470 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-------NASDEALIEVLQQVGLEKLLEDDKGLNAWLG- 470 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-------ccCHHHHHHHHHHcCCHHHHcCccccCchhc-
Confidence 9998753 5678899999999999886 99999988631 1124567888888888764 356665
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|++++|
T Consensus 471 e~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~~~--~~~~d~i~~l 546 (574)
T PRK11160 471 EGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRLTG--LEQFDRICVM 546 (574)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecChhH--HHhCCEEEEE
Confidence 4578899999999999999999999999999999999999999999999885 47999999999973 4679999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+.+++.
T Consensus 547 ~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 547 DNGQIIEQGTHQELL 561 (574)
T ss_pred eCCeEEEeCCHHHHH
Confidence 999999999988764
No 255
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.8e-41 Score=344.24 Aligned_cols=215 Identities=22% Similarity=0.371 Sum_probs=181.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|++++|+. +.+ .+|+|+|++|++||+++|+||||||||||+++|+|+++ . +|+|.++
T Consensus 2 ~i~~~nls~~~~~--------------~~~-~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~--~G~I~i~ 63 (275)
T cd03289 2 QMTVKDLTAKYTE--------------GGN-AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T--EGDIQID 63 (275)
T ss_pred eEEEEEEEEEeCC--------------CCC-cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C--CcEEEEC
Confidence 3789999999931 223 69999999999999999999999999999999999986 4 8999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccC------C
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGG------E 168 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~ 168 (610)
|.++.. ..+++.++|++|++.+++. ||+||+.... ... .+++.++++.+||.+..+..+++ +
T Consensus 64 g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~----~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~ 134 (275)
T cd03289 64 GVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG----KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVD 134 (275)
T ss_pred CEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc----CCC----HHHHHHHHHHcCCHHHHHhCcccccceecC
Confidence 998742 4567789999999999985 9999996321 111 24567788899998766655431 2
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
....||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++. .++|||+++|+++ .+. .+|++++|+
T Consensus 135 ~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~~-~i~-~~dri~vl~ 210 (275)
T cd03289 135 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRIE-AML-ECQRFLVIE 210 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCHH-HHH-hCCEEEEec
Confidence 345699999999999999999999999999999999999999999999874 4799999999996 354 599999999
Q ss_pred CCeEEEEcChhHHHH
Q 044112 249 KGTVVHHGSLDLLEH 263 (610)
Q Consensus 249 ~G~iv~~g~~~~~~~ 263 (610)
+|++++.|+++++..
T Consensus 211 ~G~i~~~g~~~~l~~ 225 (275)
T cd03289 211 ENKVRQYDSIQKLLN 225 (275)
T ss_pred CCeEeecCCHHHHhh
Confidence 999999999998754
No 256
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-40 Score=337.83 Aligned_cols=226 Identities=20% Similarity=0.252 Sum_probs=187.8
Q ss_pred eeEEEEeEEEEEecccccccc----cccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee
Q 044112 17 YRIRTKKLTYRSFRGVDEFNW----FCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG 92 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~----~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G 92 (610)
+.|+++||++.+......... +.+..+...+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~--~G 79 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTF-FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT--VG 79 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCce-EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC--ce
Confidence 578999999999653211111 1122222334 7999999999999999999999999999999999999876 99
Q ss_pred EEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 93 SVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 93 ~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
+|.++|+ +++++|+..+.+.+|+.||+.+..... ....++..+.++++++.+++.+..++.+ +.
T Consensus 80 ~I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 143 (264)
T PRK13546 80 KVDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM-GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KK 143 (264)
T ss_pred EEEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCCc-----cc
Confidence 9999985 356778777788899999998765432 1233444566788999999988887766 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||+++|+++ ++.+.+|++++|++|++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNLG-QVRQFCTKIAWIEGGKL 221 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHHcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999864 5899999999997 47889999999999999
Q ss_pred EEEcChhHHHH
Q 044112 253 VHHGSLDLLEH 263 (610)
Q Consensus 253 v~~g~~~~~~~ 263 (610)
+..|+.+++.+
T Consensus 222 ~~~g~~~~~~~ 232 (264)
T PRK13546 222 KDYGELDDVLP 232 (264)
T ss_pred EEeCCHHHHHH
Confidence 99999887654
No 257
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=2.9e-41 Score=391.24 Aligned_cols=215 Identities=26% Similarity=0.429 Sum_probs=184.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|++++|+. ..+ .+|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|.+
T Consensus 476 ~~I~~~~vsf~y~~--------------~~~-~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~--~G~I~i 538 (710)
T TIGR03796 476 GYVELRNITFGYSP--------------LEP-PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW--SGEILF 538 (710)
T ss_pred CeEEEEEEEEecCC--------------CCC-CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEE
Confidence 36999999999941 224 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||.+++ ..++|+.++||+|++.+|+. |++||+.++. +. ..++++.++++..|+.+ -.|+.+|
T Consensus 539 dg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 539 DGIPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----PT---IPDADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred CCEeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----CC---CCHHHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 999874 35688999999999999975 9999998742 11 11344566677766654 3466775
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+++|++++||||||+||+.+..++++.|++ .++|+|+++|+++ ..+.+|++++
T Consensus 611 -e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl~--~i~~~D~Iiv 683 (710)
T TIGR03796 611 -EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRLS--TIRDCDEIIV 683 (710)
T ss_pred -cCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCHH--HHHhCCEEEE
Confidence 45689999999999999999999999999999999999999999999975 3799999999996 4577999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|+++..|+.+++.+
T Consensus 684 l~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 684 LERGKVVQRGTHEELWA 700 (710)
T ss_pred EeCCEEEEecCHHHHHH
Confidence 99999999999998754
No 258
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=5e-41 Score=388.35 Aligned_cols=216 Identities=30% Similarity=0.495 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++||+++|+. .+++ .+|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|.+
T Consensus 477 ~~I~~~nVsf~Y~~-------------~~~~-~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i 540 (711)
T TIGR00958 477 GLIEFQDVSFSYPN-------------RPDV-PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT--GGQVLL 540 (711)
T ss_pred CeEEEEEEEEECCC-------------CCCC-ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEE
Confidence 35999999999941 1123 7999999999999999999999999999999999999987 999999
Q ss_pred CCEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||++++ ...+++.++||+||+.+|+. |++|||.++.. ..+ ++++.++++..++.+ -.|+.+|
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~---~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ig 612 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLT---DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVG 612 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCCCccCCccc
Confidence 999974 35678899999999999985 99999987631 112 345667777777654 3567776
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+++|+|++||||||+||+.+.+.+.+ .. . ..++|+|+++|+++ ..+.+|+|++
T Consensus 613 -e~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~-~--~~~~TvIiItHrl~--~i~~aD~Iiv 685 (711)
T TIGR00958 613 -EKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR-S--RASRTVLLIAHRLS--TVERADQILV 685 (711)
T ss_pred -CCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh-c--cCCCeEEEEeccHH--HHHhCCEEEE
Confidence 4567899999999999999999999999999999999999999988 22 2 34799999999996 4578999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|+++..|+.+++.+
T Consensus 686 L~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 686 LKKGSVVEMGTHKQLME 702 (711)
T ss_pred EECCEEEEeeCHHHHHh
Confidence 99999999999988754
No 259
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-41 Score=337.96 Aligned_cols=213 Identities=31% Similarity=0.510 Sum_probs=171.4
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|
T Consensus 1 l~~~~l~~~~~---------------~~~-~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~v~~~g 62 (236)
T cd03253 1 IEFENVTFAYD---------------PGR-PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS--SGSILIDG 62 (236)
T ss_pred CEEEEEEEEeC---------------CCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEEEECC
Confidence 46899999882 223 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHc--CCcccccccccCC
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKA-----RVSELLKEL--GLEHVANVRIGGE 168 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~ 168 (610)
+++.. ..+++.++|++|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ +++...+.
T Consensus 63 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~----- 133 (236)
T cd03253 63 QDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE----- 133 (236)
T ss_pred EEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhc-----
Confidence 98642 345677999999998886 6999999875321 11111111 122233333 33333333
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|++++ + |+|||+++|+++. + ..+|++++|+
T Consensus 134 ~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~sh~~~~-~-~~~d~~~~l~ 209 (236)
T cd03253 134 RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS-K-GRTTIVIAHRLST-I-VNADKIIVLK 209 (236)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-H-HhCCEEEEEE
Confidence 347999999999999999999999999999999999999999999999986 4 8999999999974 5 4599999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|+++..|+.++..
T Consensus 210 ~g~i~~~~~~~~~~ 223 (236)
T cd03253 210 DGRIVERGTHEELL 223 (236)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999877654
No 260
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=361.53 Aligned_cols=216 Identities=32% Similarity=0.507 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.++++|||++|++ ++. ++|+|+|+++++||-+||+|+||||||||++.|+|.++|+ +|+|.+|
T Consensus 336 ~l~~~~vsF~y~~--------------~~~-~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~--~G~i~~~ 398 (573)
T COG4987 336 ALELRNVSFTYPG--------------QQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ--QGSITLN 398 (573)
T ss_pred eeeeccceeecCC--------------Ccc-chhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC--CCeeeEC
Confidence 7999999999952 223 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc-------cccccC
Q 044112 98 EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA-------NVRIGG 167 (610)
Q Consensus 98 g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~ 167 (610)
|.++. ++..++.+++++|...+|.. |+++||.++.. . ..++.+.++++.+||++.. |+.+|
T Consensus 399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~----~---AsDEel~~aL~qvgL~~l~~~~p~gl~t~lg- 469 (573)
T COG4987 399 GVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANP----D---ASDEELWAALQQVGLEKLLESAPDGLNTWLG- 469 (573)
T ss_pred CcChhhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCC----C---CCHHHHHHHHHHcCHHHHHHhChhhhhchhc-
Confidence 99874 34578889999999999987 99999987631 1 1235577888888887644 44564
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.++.||||||||++|||+|++|.++++|||||.|||+.+.+++++.|.+.+ +|||+|++||+... .+.||||++|
T Consensus 470 e~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~vTHrL~~--le~~drIivl 545 (573)
T COG4987 470 EGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRG--LERMDRIIVL 545 (573)
T ss_pred cCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEEEeccccc--HhhcCEEEEE
Confidence 6779999999999999999999999999999999999999999999999876 48999999999974 5889999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|+++.+|.++++..
T Consensus 546 ~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 546 DNGKIIEEGTHAELLA 561 (573)
T ss_pred ECCeeeecCCHHhhhc
Confidence 9999999999988754
No 261
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.2e-41 Score=323.10 Aligned_cols=173 Identities=39% Similarity=0.622 Sum_probs=155.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++ +.+ .+++|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++|
T Consensus 1 i~~~~l~~~~----------------~~~-~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 61 (178)
T cd03229 1 LELKNVSKRY----------------GQK-TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD--SGSILIDG 61 (178)
T ss_pred CEEEEEEEEE----------------CCe-EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEECC
Confidence 4689999988 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 99 QPMNI-----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 99 ~~~~~-----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
+++.. ...++.++|++|++.+++.+|++||+.+. |
T Consensus 62 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~----------------------------------------l 101 (178)
T cd03229 62 EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------------------------------L 101 (178)
T ss_pred EEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec----------------------------------------C
Confidence 98642 34567899999999999889999987542 9
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|+++|+++ ++.+.+|++++|++|+
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999997654799999999997 4777999999999885
No 262
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=7e-41 Score=386.98 Aligned_cols=217 Identities=33% Similarity=0.546 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|++++|+. +.+ .+|+|+|+++++||.+||+||||||||||+|+|+|+++|. +|+|.+|
T Consensus 463 ~I~~~~vsf~Y~~--------------~~~-~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~--~G~I~id 525 (694)
T TIGR03375 463 EIEFRNVSFAYPG--------------QET-PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT--EGSVLLD 525 (694)
T ss_pred eEEEEEEEEEeCC--------------CCc-cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEEC
Confidence 5999999999931 223 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~ 167 (610)
|.+++. ..+|+.++||+|++.+|+. |++||+.++.. ..+ ++++.++++..|+.+ -.||.+|
T Consensus 526 g~~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~- 596 (694)
T TIGR03375 526 GVDIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP---YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIG- 596 (694)
T ss_pred CEEhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC---CCC----HHHHHHHHHHcChHHHHHhCcccccceec-
Confidence 998753 5688999999999999986 99999987521 112 344566666666543 3567776
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+++|++++||||||+||+.+...+.+.|+++. .++|+|+++|+++ ..+.||+|++|
T Consensus 597 e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~iiItHrl~--~~~~~D~iivl 672 (694)
T TIGR03375 597 ERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVLVTHRTS--LLDLVDRIIVM 672 (694)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEecCHH--HHHhCCEEEEE
Confidence 4568899999999999999999999999999999999999999999999885 3799999999996 46889999999
Q ss_pred eCCeEEEEcChhHHHHH
Q 044112 248 SKGTVVHHGSLDLLEHR 264 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~~ 264 (610)
++|++++.|+.+++.+.
T Consensus 673 ~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 673 DNGRIVADGPKDQVLEA 689 (694)
T ss_pred eCCEEEeeCCHHHHHHH
Confidence 99999999999987654
No 263
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=6.7e-41 Score=387.95 Aligned_cols=215 Identities=27% Similarity=0.455 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|++++|+ +.+ .+|+|+|+++++||.+||+||||||||||+|+|+|+++|+ +|+|.+|
T Consensus 473 ~I~~~~vsf~y~---------------~~~-~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~--~G~I~id 534 (708)
T TIGR01193 473 DIVINDVSYSYG---------------YGS-NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLN 534 (708)
T ss_pred cEEEEEEEEEcC---------------CCC-cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC--CcEEEEC
Confidence 599999999993 224 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 044112 98 EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIGG 167 (610)
Q Consensus 98 g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~ 167 (610)
|.+++ ...+|+.+|||+|++.+|+. |++||+.++... ..+ ++++.++++..|+.+ -.|+.+|
T Consensus 535 g~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~--~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~- 606 (708)
T TIGR01193 535 GFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKE--NVS----QDEIWAACEIAEIKDDIENMPLGYQTELS- 606 (708)
T ss_pred CEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCC--CCC----HHHHHHHHHHhCCHHHHHhcccccCcEec-
Confidence 99874 35788999999999999986 999999886321 112 234566666666543 3477775
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++||||++++|++|+||||||+||+.+...+++.|+++ .|+|+|+++|+++ ..+.+|++++|
T Consensus 607 e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~~--~~~~~D~i~~l 681 (708)
T TIGR01193 607 EEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRLS--VAKQSDKIIVL 681 (708)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecchH--HHHcCCEEEEE
Confidence 456889999999999999999999999999999999999999999999874 3789999999996 46889999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|+++..|+.+++.+
T Consensus 682 ~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 682 DHGKIIEQGSHDELLD 697 (708)
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988653
No 264
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.3e-40 Score=326.76 Aligned_cols=195 Identities=27% Similarity=0.374 Sum_probs=168.0
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+ +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 61 (198)
T TIGR01189 1 LAARNLACSR----------------GER-MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD--SGEVRWNG 61 (198)
T ss_pred CEEEEEEEEE----------------CCE-EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECC
Confidence 4689999988 334 7999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 99 QPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 99 ~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+++.. ..+++.++|++|++.+++.+||.||+.+....+. . .+++++++++.+|+.+..++.+ ..||||
T Consensus 62 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 131 (198)
T TIGR01189 62 TALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG---G--AQRTIEDALAAVGLTGFEDLPA-----AQLSAG 131 (198)
T ss_pred EEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC---C--cHHHHHHHHHHcCCHHHhcCCh-----hhcCHH
Confidence 98642 2345679999999989998999999988754431 1 1346788999999998887776 589999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++.. -.+++++.
T Consensus 132 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 132 QQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEccccc---ccceEEee
Confidence 99999999999999999999999999999999999999999865 58899999999863 34576654
No 265
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-40 Score=332.49 Aligned_cols=208 Identities=27% Similarity=0.420 Sum_probs=172.5
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++.. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 3 l~~~~l~~~~~~--------------~~~-~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g 65 (221)
T cd03244 3 IEFKNVSLRYRP--------------NLP-PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELS--SGSILIDG 65 (221)
T ss_pred EEEEEEEEecCC--------------CCc-ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECC
Confidence 789999999831 223 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccc-------cccCC
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANV-------RIGGE 168 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~ 168 (610)
.++.. ..+++.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+..++ .. +.
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~----~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~ 135 (221)
T cd03244 66 VDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE----YS----DEELWQALERVGLKEFVESLPGGLDTVV-EE 135 (221)
T ss_pred EEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC----CC----HHHHHHHHHHhCcHHHHHhccccccccc-cc
Confidence 98642 345678999999998776 599999964321 11 2345666777776654432 11 23
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++. +. .+|++++|+
T Consensus 136 ~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~~-~~d~i~~l~ 211 (221)
T cd03244 136 GGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF-K-DCTVLTIAHRLDT-II-DSDRILVLD 211 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-Hh-hCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999985 3 6899999999974 54 599999999
Q ss_pred CCeEEEEcC
Q 044112 249 KGTVVHHGS 257 (610)
Q Consensus 249 ~G~iv~~g~ 257 (610)
+|++++.|+
T Consensus 212 ~g~~~~~~~ 220 (221)
T cd03244 212 KGRVVEFDS 220 (221)
T ss_pred CCeEEecCC
Confidence 999998875
No 266
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-40 Score=372.66 Aligned_cols=214 Identities=22% Similarity=0.394 Sum_probs=183.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++|+++.+ + .+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.+
T Consensus 264 ~~l~~~~l~~~~------------------~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~--~G~I~~ 322 (510)
T PRK09700 264 TVFEVRNVTSRD------------------R-KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA--GGEIRL 322 (510)
T ss_pred cEEEEeCccccC------------------C-CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEE
Confidence 368999998753 1 4799999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh----hcccceEEEEccC---CCCCCCCCHHHHHHHHHHhc---C----CC-CHHHHHHHHHHHHHHcCCc-cc
Q 044112 97 NEQPMNI----TQFRRISGYVTQD---EVLFPLLTVKETLMYSARLR---L----HV-GLNRAKARVSELLKELGLE-HV 160 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~---~~l~~~lTv~E~l~~~~~~~---~----~~-~~~~~~~~v~~~l~~lgL~-~~ 160 (610)
+|+++.. ...++.++|++|+ ..+++.+||+||+.+....+ . +. ..++.+++++++++.+||. +.
T Consensus 323 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 402 (510)
T PRK09700 323 NGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS 402 (510)
T ss_pred CCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCC
Confidence 9998742 2345679999998 46889999999998764321 0 10 1223345688999999997 67
Q ss_pred ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 161 ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 161 ~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
.++++ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++
T Consensus 403 ~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~~-~~~~~ 475 (510)
T PRK09700 403 VNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSELP-EIITV 475 (510)
T ss_pred ccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHhh
Confidence 78777 59999999999999999999999999999999999999999999999975 5899999999997 58899
Q ss_pred cceEEEeeCCeEEEEcCh
Q 044112 241 FDQILLLSKGTVVHHGSL 258 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~ 258 (610)
||++++|++|+++..++.
T Consensus 476 ~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 476 CDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CCEEEEEECCEEEEEecC
Confidence 999999999999988765
No 267
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.4e-40 Score=330.81 Aligned_cols=211 Identities=29% Similarity=0.385 Sum_probs=172.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++.|..+ ++.+.++.+|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 1 ml~~~~l~~~~~~~----------~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~ 68 (224)
T TIGR02324 1 LLEVEDLSKTFTLH----------QQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD--SGRILVR 68 (224)
T ss_pred CEEEEeeEEEeecc----------cCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEEEe
Confidence 37899999999421 00111126999999999999999999999999999999999999876 8999998
Q ss_pred --CE--eCCh---h---cc-cceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-ccccc
Q 044112 98 --EQ--PMNI---T---QF-RRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-ANVRI 165 (610)
Q Consensus 98 --g~--~~~~---~---~~-~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v 165 (610)
|+ ++.. . .. ++.++|++|++.+++.+||+|++.+..... ....++..+++.++++.+||.+. .+..+
T Consensus 69 ~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (224)
T TIGR02324 69 HEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERLWHLPP 147 (224)
T ss_pred cCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhhCCc
Confidence 43 3321 1 12 356999999999999999999999865432 22233445678899999999763 45554
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+++|+++
T Consensus 148 -----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~~-~~~~~~d~i~ 220 (224)
T TIGR02324 148 -----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDEE-VRELVADRVM 220 (224)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhcceeE
Confidence 69999999999999999999999999999999999999999999999864 5899999999976 4678999998
Q ss_pred Eee
Q 044112 246 LLS 248 (610)
Q Consensus 246 ~L~ 248 (610)
.+.
T Consensus 221 ~~~ 223 (224)
T TIGR02324 221 DVT 223 (224)
T ss_pred ecC
Confidence 763
No 268
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.4e-40 Score=376.13 Aligned_cols=218 Identities=28% Similarity=0.484 Sum_probs=185.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|+++.|+ +++ ++|+|+|+++++||.+||+||||||||||+|.|.|+++|+ +|+|.+
T Consensus 327 ~~I~f~~vsf~y~---------------~~~-~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~--~G~I~i 388 (567)
T COG1132 327 GSIEFENVSFSYP---------------GKK-PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT--SGEILI 388 (567)
T ss_pred CeEEEEEEEEEcC---------------CCC-ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEE
Confidence 4599999999993 234 7999999999999999999999999999999999999886 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHH-----HHHHHHcCCcccccccccCC
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARV-----SELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~ 168 (610)
||.+++. ..+|+.++||+||+.+|. -||+||+.++..- .++++..+.+ ++.+.. +.+..||.+| +
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~---at~eei~~a~k~a~~~d~I~~--lp~g~dt~vg-e 461 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPD---ATDEEIEEALKLANAHEFIAN--LPDGYDTIVG-E 461 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCC---CCHHHHHHHHHHhChHHHHHh--Ccccccceec-C
Confidence 9998753 678899999999999999 5999999987421 1333322222 222333 3445789997 6
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+..||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +++|+|+++|.++. + +.+|+|++|+
T Consensus 462 ~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~iiIaHRlst-i-~~aD~IiVl~ 537 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLIIAHRLST-I-KNADRIIVLD 537 (567)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEEEeccHhH-H-HhCCEEEEEE
Confidence 778999999999999999999999999999999999999999999999875 36899999999973 4 5599999999
Q ss_pred CCeEEEEcChhHHHH
Q 044112 249 KGTVVHHGSLDLLEH 263 (610)
Q Consensus 249 ~G~iv~~g~~~~~~~ 263 (610)
+|++++.|+.+++.+
T Consensus 538 ~G~i~e~G~h~eLl~ 552 (567)
T COG1132 538 NGRIVERGTHEELLA 552 (567)
T ss_pred CCEEEEecCHHHHHH
Confidence 999999999998764
No 269
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-40 Score=370.53 Aligned_cols=210 Identities=25% Similarity=0.362 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 3 ~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~--~G~i~~~ 63 (490)
T PRK10938 3 SLQISQGTFRL----------------SDT-KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL--SGERQSQ 63 (490)
T ss_pred eEEEEeEEEEc----------------CCe-eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CceEEEC
Confidence 69999999999 334 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCC--C------CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVL--F------PLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG 166 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l--~------~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 166 (610)
|.++.. ...++.++|++|++.. + ..+||+|++.+. .+.+++++++++.+||.+..++++
T Consensus 64 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~~l~~~~~~~~- 133 (490)
T PRK10938 64 FSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE---------VKDPARCEQLAQQFGITALLDRRF- 133 (490)
T ss_pred CcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc---------hhHHHHHHHHHHHcCCHhhhhCCc-
Confidence 977532 2345569999998642 1 147888887542 123467889999999998888777
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
.+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++
T Consensus 134 ----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~~-~~~~~~d~v~~ 207 (490)
T PRK10938 134 ----KYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFD-EIPDFVQFAGV 207 (490)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEE
Confidence 59999999999999999999999999999999999999999999999975 4899999999998 48899999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|+++..|++++..
T Consensus 208 l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 208 LADCTLAETGEREEIL 223 (490)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999987653
No 270
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7.6e-41 Score=334.92 Aligned_cols=210 Identities=29% Similarity=0.502 Sum_probs=172.8
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
.-+|+++|+++++.. ++.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.
T Consensus 9 ~~~l~~~~l~~~~~~-------------~~~~-~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~ 72 (226)
T cd03248 9 KGIVKFQNVTFAYPT-------------RPDT-LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ--GGQVL 72 (226)
T ss_pred CceEEEEEEEEEeCC-------------CCCC-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CcEEE
Confidence 346899999999931 1123 6999999999999999999999999999999999999876 99999
Q ss_pred ECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCH-HH--HHHHHHHHHHHc--CCcccccccccC
Q 044112 96 VNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGL-NR--AKARVSELLKEL--GLEHVANVRIGG 167 (610)
Q Consensus 96 ~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~-~~--~~~~v~~~l~~l--gL~~~~~~~vg~ 167 (610)
++|+++.. ...++.++|++|++.+++ .||+||+.++.... .... .+ .+..++++++.+ |+++..+..+
T Consensus 73 ~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-- 148 (226)
T cd03248 73 LDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSC-SFECVKEAAQKAHAHSFISELASGYDTEVGEKG-- 148 (226)
T ss_pred ECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCC-CHHHHHHHHHHcCcHHHHHhccccccchhhcCC--
Confidence 99987642 334567999999998876 59999998754311 1000 01 112356788888 7877666655
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ + ++|||++||+++. +. .+|++++|
T Consensus 149 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~~-~~d~i~~l 221 (226)
T cd03248 149 ---SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP-E-RRTVLVIAHRLST-VE-RADQILVL 221 (226)
T ss_pred ---CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEECCHHH-HH-hCCEEEEe
Confidence 6999999999999999999999999999999999999999999999986 3 5899999999974 64 59999999
Q ss_pred eCCeE
Q 044112 248 SKGTV 252 (610)
Q Consensus 248 ~~G~i 252 (610)
++|++
T Consensus 222 ~~g~i 226 (226)
T cd03248 222 DGGRI 226 (226)
T ss_pred cCCcC
Confidence 99874
No 271
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-40 Score=326.26 Aligned_cols=195 Identities=25% Similarity=0.401 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +++ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 1 ml~~~~l~~~~----------------~~~-~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~ 61 (200)
T PRK13540 1 MLDVIELDFDY----------------HDQ-PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFE 61 (200)
T ss_pred CEEEEEEEEEe----------------CCe-eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeeEEEC
Confidence 37899999998 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 98 EQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|+++.. ..+++.++|++|+..+++.+||+||+.+..... . .+.+++++++.+++.+..++++ ..|||
T Consensus 62 g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~----~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 130 (200)
T PRK13540 62 RQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS----P--GAVGITELCRLFSLEHLIDYPC-----GLLSS 130 (200)
T ss_pred CCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC----c--chHHHHHHHHHcCCchhhhCCh-----hhcCH
Confidence 998742 345678999999999889999999999875321 1 1246889999999987777766 58999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
|||||++||++++.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++.. .+.+|...
T Consensus 131 G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999999999999864 58999999999864 46677544
No 272
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=356.54 Aligned_cols=216 Identities=28% Similarity=0.458 Sum_probs=194.4
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...++.+|++++| +.. ++|+||||++++||++||+|.||||||||+|+|+|.++|+ +|+|.
T Consensus 6 ~~ll~~~~i~K~F----------------ggV-~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~--~G~I~ 66 (500)
T COG1129 6 PPLLELRGISKSF----------------GGV-KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD--SGEIL 66 (500)
T ss_pred cceeeeecceEEc----------------CCc-eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC--CceEE
Confidence 3468999999999 445 7999999999999999999999999999999999999987 99999
Q ss_pred ECCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCC
Q 044112 96 VNEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 96 ~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 168 (610)
+||++... .....-|+.|+||..+.|+|||.||+.++...+.+ ...++.++++.++|+.+|+....+++|+
T Consensus 67 ~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-- 144 (500)
T COG1129 67 IDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-- 144 (500)
T ss_pred ECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh--
Confidence 99998752 23446799999999999999999999988665432 1556778889999999999655788885
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.||+||||.|+||+||..+++|++||||||.|+......+.++++++. ++|.+||.+||.++ |++++|||+.+|+
T Consensus 145 ---~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk-~~Gv~ii~ISHrl~-Ei~~i~DritVlR 219 (500)
T COG1129 145 ---DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK-AQGVAIIYISHRLD-EVFEIADRITVLR 219 (500)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEcCcHH-HHHHhcCEEEEEe
Confidence 899999999999999999999999999999999999999999999996 57999999999998 7999999999999
Q ss_pred CCeEEEEcC
Q 044112 249 KGTVVHHGS 257 (610)
Q Consensus 249 ~G~iv~~g~ 257 (610)
||+.+...+
T Consensus 220 DG~~v~~~~ 228 (500)
T COG1129 220 DGRVVGTRP 228 (500)
T ss_pred CCEEeeecc
Confidence 999998888
No 273
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.7e-40 Score=325.03 Aligned_cols=188 Identities=28% Similarity=0.393 Sum_probs=161.4
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC--CCCCceeEEEE
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI--PLRRVSGSVLV 96 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~--~~~~~~G~I~~ 96 (610)
|+++|+++++ +.+ .+++|+|+++++||+++|+||||||||||+++|+|+. +|+ +|+|.+
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~--~G~i~~ 61 (200)
T cd03217 1 LEIKDLHVSV----------------GGK-EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVT--EGEILF 61 (200)
T ss_pred CeEEEEEEEe----------------CCE-EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC--ccEEEE
Confidence 4689999998 334 6999999999999999999999999999999999995 454 999999
Q ss_pred CCEeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 97 NEQPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 97 ~g~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
+|+++.. .. .++.++|++|++.+++.+|+++++ +.. .+.
T Consensus 62 ~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l--------------------------------~~~-----~~~ 104 (200)
T cd03217 62 KGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL--------------------------------RYV-----NEG 104 (200)
T ss_pred CCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH--------------------------------hhc-----ccc
Confidence 9998753 12 234599999999999988888776 000 147
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH-hcceEEEeeCCe
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE-LFDQILLLSKGT 251 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~ 251 (610)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+ .+|++++|++|+
T Consensus 105 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~ 182 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQR-LLDYIKPDRVHVLYDGR 182 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999975 4899999999997 4666 799999999999
Q ss_pred EEEEcChhHHHHHH
Q 044112 252 VVHHGSLDLLEHRL 265 (610)
Q Consensus 252 iv~~g~~~~~~~~~ 265 (610)
++..|+.+ +.+++
T Consensus 183 i~~~~~~~-~~~~~ 195 (200)
T cd03217 183 IVKSGDKE-LALEI 195 (200)
T ss_pred EEEEccHH-HHhhh
Confidence 99999554 54444
No 274
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-41 Score=333.14 Aligned_cols=195 Identities=32% Similarity=0.517 Sum_probs=177.7
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-------hcccceEEEEccCCCCCCCCCH
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-------TQFRRISGYVTQDEVLFPLLTV 125 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTv 125 (610)
++++..+.-.++||-|+||||||||+|+|+|+.+|+ +|+|.+||+-+.. ...+|++|||+||-.+||++||
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd--eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV 93 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV 93 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc--ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence 578888776799999999999999999999999988 9999999987532 2357889999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044112 126 KETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDS 205 (610)
Q Consensus 126 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 205 (610)
+.||.|+.... .....+++.+.+|++|..+++. ..|||||||||+|+|||+++|++|++|||.+.||.
T Consensus 94 rgNL~YG~~~~-------~~~~fd~iv~lLGI~hLL~R~P-----~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 94 RGNLRYGMWKS-------MRAQFDQLVALLGIEHLLDRYP-----GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred ecchhhhhccc-------chHhHHHHHHHhCcHHHHhhCC-----CccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 99999986531 3455788999999999998775 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 206 ASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 206 ~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
..+.+++-.|++++++.+..|+.+||.++ |+.+++|+|++|++|++...|+.+++.
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~ 217 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVW 217 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHh
Confidence 99999999999999999999999999998 799999999999999999999998865
No 275
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.3e-40 Score=367.70 Aligned_cols=221 Identities=24% Similarity=0.426 Sum_probs=186.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC-CCceeEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL-RRVSGSVL 95 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~-~~~~G~I~ 95 (610)
.+|+++|+++++.. .+.+ .+|+|+|+++++||+++|+||||||||||||+|+|+.+| + +|+|.
T Consensus 256 ~~l~~~~l~~~~~~-------------~~~~-~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~--~G~i~ 319 (500)
T TIGR02633 256 VILEARNLTCWDVI-------------NPHR-KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF--EGNVF 319 (500)
T ss_pred ceEEEeCCcccccc-------------cccc-cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCC--CeEEE
Confidence 46999999987620 0123 699999999999999999999999999999999999974 4 89999
Q ss_pred ECCEeCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHHHH--hcC--CCCHHHHHHHHHHHHHHcCCcc-cccc
Q 044112 96 VNEQPMNI----TQFRRISGYVTQDE---VLFPLLTVKETLMYSAR--LRL--HVGLNRAKARVSELLKELGLEH-VANV 163 (610)
Q Consensus 96 ~~g~~~~~----~~~~~~~~yv~Q~~---~l~~~lTv~E~l~~~~~--~~~--~~~~~~~~~~v~~~l~~lgL~~-~~~~ 163 (610)
++|+++.. ...++.++|++|+. .+++.+||+||+.++.. ... .....+.+++++++++.+++.+ ..++
T Consensus 320 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 399 (500)
T TIGR02633 320 INGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFL 399 (500)
T ss_pred ECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccC
Confidence 99998742 23456799999995 58899999999988642 111 1122334567899999999974 5677
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
++ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|.|||++|||++ ++.++||+
T Consensus 400 ~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~-~~~~~~d~ 472 (500)
T TIGR02633 400 PI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELA-EVLGLSDR 472 (500)
T ss_pred cc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCE
Confidence 76 59999999999999999999999999999999999999999999999975 4899999999998 58899999
Q ss_pred EEEeeCCeEEEEcChhH
Q 044112 244 ILLLSKGTVVHHGSLDL 260 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~ 260 (610)
+++|++|+++..++.++
T Consensus 473 v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 473 VLVIGEGKLKGDFVNHA 489 (500)
T ss_pred EEEEECCEEEEEEcccc
Confidence 99999999998876543
No 276
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3e-40 Score=374.93 Aligned_cols=214 Identities=29% Similarity=0.490 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.++++|++++|+ +.+ .+|+|+|+++++||.++|+|+||||||||+|+|+|+++|. +|+|.+|
T Consensus 334 ~I~~~~vsf~y~---------------~~~-~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~--~G~I~i~ 395 (588)
T PRK13657 334 AVEFDDVSFSYD---------------NSR-QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ--SGRILID 395 (588)
T ss_pred eEEEEEEEEEeC---------------CCC-ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEEC
Confidence 599999999993 223 6999999999999999999999999999999999999987 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~ 167 (610)
|++++. ..+++.++||+|++.+|+. |++||+.++.. ..+ ++++.++++..|+.+ -.|+.+|
T Consensus 396 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~---~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~- 466 (588)
T PRK13657 396 GTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP---DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVG- 466 (588)
T ss_pred CEEhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC---CCC----HHHHHHHHHHhCHHHHHHhCcccccchhc-
Confidence 998753 5678899999999999976 99999987521 112 234555666666543 3466665
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.++.||||||||++|||||+++|++++||||||+||+.++..+++.|+++. .++|+|++||+++ ..+.+|++++|
T Consensus 467 ~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~~--~~~~~D~ii~l 542 (588)
T PRK13657 467 ERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRLS--TVRNADRILVF 542 (588)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecHH--HHHhCCEEEEE
Confidence 3467899999999999999999999999999999999999999999999874 3799999999996 46889999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+.+++.
T Consensus 543 ~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 543 DNGRVVESGSFDELV 557 (588)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
No 277
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=8e-40 Score=335.70 Aligned_cols=240 Identities=25% Similarity=0.381 Sum_probs=207.9
Q ss_pred CCCCCCCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 8 PHSTDRKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 8 ~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
|.+.+......++.+|+.+.++.+... . +.......++++||+++++||.++|+|+||||||||=.+|.+++++
T Consensus 266 ~~p~~~~~~~ll~~~~v~v~f~i~~g~----~--~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s 339 (534)
T COG4172 266 PPPLPEDAPVLLEVEDLRVWFPIKGGF----L--RRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS 339 (534)
T ss_pred CCCCCCCCCceEEecceEEEEecCCcc----c--cccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc
Confidence 334444556789999999999765321 1 1112222699999999999999999999999999999999999976
Q ss_pred CCceeEEEECCEeCCh------hcccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCc
Q 044112 88 RRVSGSVLVNEQPMNI------TQFRRISGYVTQDEV--LFPLLTVKETLMYSARLRLHV-GLNRAKARVSELLKELGLE 158 (610)
Q Consensus 88 ~~~~G~I~~~g~~~~~------~~~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~ 158 (610)
+|+|.++|++++. ...|+.+-.|+||+. +.|.+||.|-+.-+...+.+. +..++.+++.++|++.||+
T Consensus 340 ---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLD 416 (534)
T COG4172 340 ---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLD 416 (534)
T ss_pred ---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5999999999863 246788999999984 899999999999998887654 7788889999999999997
Q ss_pred cc-ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHH
Q 044112 159 HV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRI 237 (610)
Q Consensus 159 ~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i 237 (610)
.. .+ .+|++.|||||||++||||++.+|++++||||||.||-.-+.+++++|+++.++.|.+-++++||+.- +
T Consensus 417 p~~r~-----RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-v 490 (534)
T COG4172 417 PATRN-----RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-V 490 (534)
T ss_pred hhHhh-----cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-H
Confidence 53 34 45689999999999999999999999999999999999999999999999999999999999999984 7
Q ss_pred HHhcceEEEeeCCeEEEEcChhHHH
Q 044112 238 LELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 238 ~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
-.+||+|+||++|++|++|+.+++.
T Consensus 491 rAl~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 491 RALCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred HHhhceEEEEeCCEEeeeCCHHHHh
Confidence 8899999999999999999998764
No 278
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4e-40 Score=321.11 Aligned_cols=177 Identities=33% Similarity=0.525 Sum_probs=153.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-----hcccceEEEEccCCC-CCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-----TQFRRISGYVTQDEV-LFPL 122 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-----~~~~~~~~yv~Q~~~-l~~~ 122 (610)
.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ...++.++|++|++. .+..
T Consensus 6 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 6 EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ--SGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 6999999999999999999999999999999999999876 9999999998741 234567999999973 2334
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCC
Q 044112 123 LTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSG 202 (610)
Q Consensus 123 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsg 202 (610)
.||+||+.+..... ..+.++.+++++++++.+||.+..++.+ +.||||||||++||+||+.+|++++|||||+|
T Consensus 84 ~tv~~nl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~ 157 (190)
T TIGR01166 84 ADVDQDVAFGPLNL-GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157 (190)
T ss_pred ccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 79999999875432 2233444567899999999988877766 59999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 203 LDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
||+.++..+.+.|+++++ .|+|||++||+++
T Consensus 158 LD~~~~~~~~~~l~~~~~-~~~tili~sH~~~ 188 (190)
T TIGR01166 158 LDPAGREQMLAILRRLRA-EGMTVVISTHDVD 188 (190)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCEEEEEeeccc
Confidence 999999999999999975 5899999999986
No 279
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5e-40 Score=318.40 Aligned_cols=172 Identities=31% Similarity=0.551 Sum_probs=154.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++
T Consensus 4 ~l~~~~l~~~~---------------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 60 (182)
T cd03215 4 VLEVRGLSVKG---------------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA--SGEITLD 60 (182)
T ss_pred EEEEeccEEEe---------------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEC
Confidence 58888888763 699999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 98 EQPMNI----TQFRRISGYVTQDE---VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~----~~~~~~~~yv~Q~~---~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
|+++.. ...++.++|++|++ .+++.+|++||+.+...
T Consensus 61 g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------ 104 (182)
T cd03215 61 GKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL------------------------------------ 104 (182)
T ss_pred CEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh------------------------------------
Confidence 998753 23466899999984 57888999999976421
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|+|+++|+++ ++.+++|++++|++|
T Consensus 105 --LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~~~~~~d~v~~l~~G 180 (182)
T cd03215 105 --LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSELD-ELLGLCDRILVMYEG 180 (182)
T ss_pred --cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEecCC
Confidence 999999999999999999999999999999999999999999999875 4899999999997 588999999999999
Q ss_pred eE
Q 044112 251 TV 252 (610)
Q Consensus 251 ~i 252 (610)
++
T Consensus 181 ~i 182 (182)
T cd03215 181 RI 182 (182)
T ss_pred cC
Confidence 74
No 280
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.9e-40 Score=373.90 Aligned_cols=216 Identities=28% Similarity=0.471 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|+. ..+ .+|+|+|+++++||.++|+|+||||||||+|+|+|+++|. +|+|.+|
T Consensus 330 ~i~~~~v~f~y~~--------------~~~-~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~--~G~I~i~ 392 (571)
T TIGR02203 330 DVEFRNVTFRYPG--------------RDR-PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD--SGQILLD 392 (571)
T ss_pred eEEEEEEEEEcCC--------------CCC-ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEEC
Confidence 5999999999931 123 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 044112 98 EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIGG 167 (610)
Q Consensus 98 g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~ 167 (610)
|.+++ ..++++.++|++|++.+|+. |++|||.++.. ++..+++++++++..|+.+ -.|+.+|+
T Consensus 393 g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~------~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 393 GHDLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT------EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred CEeHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC------CCCCHHHHHHHHHHcChHHHHHhCcCcccceecC
Confidence 99874 35678889999999999876 99999987531 0112345677777777653 34667763
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
..+.||||||||++|||+++++|++++||||||+||+.++..+++.|++++ .++|+|++||+++ ..+.||+|++|
T Consensus 466 -~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~~--~~~~~D~ii~l 540 (571)
T TIGR02203 466 -NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRLS--TIEKADRIVVM 540 (571)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhhH--HHHhCCEEEEE
Confidence 467899999999999999999999999999999999999999999999875 3799999999995 57889999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+.+++.
T Consensus 541 ~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 541 DDGRIVERGTHNELL 555 (571)
T ss_pred eCCEEEeeCCHHHHH
Confidence 999999999998764
No 281
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=5.4e-40 Score=335.28 Aligned_cols=214 Identities=23% Similarity=0.365 Sum_probs=172.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|+++++.. ..+ .+|+|+|+++++||+++|+|+||||||||+++|+|++++. +|+|.++
T Consensus 19 ~i~~~~l~~~~~~--------------~~~-~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~i~ 81 (257)
T cd03288 19 EIKIHDLCVRYEN--------------NLK-PVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF--DGKIVID 81 (257)
T ss_pred eEEEEEEEEEeCC--------------CCC-cceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCC--CCeEEEC
Confidence 5899999999831 123 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH-----HHHHHHHHHc--CCcccccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAK-----ARVSELLKEL--GLEHVANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~ 167 (610)
|+++.. ..+++.++|++|++.+++ .|++||+..... ...+... ..+++.++.+ |++...+.
T Consensus 82 g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~---- 152 (257)
T cd03288 82 GIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECK----CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTE---- 152 (257)
T ss_pred CEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCC----CCHHHHHHHHHHhCcHHHHhhcccccCcEecc----
Confidence 998743 345678999999998887 499999854211 0111110 0122333333 34333332
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. .++|||+++|+++. +. .+|++++|
T Consensus 153 -~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~~~-~~-~~dri~~l 227 (257)
T cd03288 153 -GGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRVST-IL-DADLVLVL 227 (257)
T ss_pred -CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecChHH-HH-hCCEEEEE
Confidence 347999999999999999999999999999999999999999999999874 37999999999984 55 49999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (257)
T cd03288 228 SRGILVECDTPENLL 242 (257)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
No 282
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7e-40 Score=368.59 Aligned_cols=217 Identities=29% Similarity=0.505 Sum_probs=180.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++++|++++|+. +++ .+|+|+|+++++||.++|+||||||||||+|+|+|+++|. +|+|.+
T Consensus 315 ~~i~~~~v~~~y~~--------------~~~-~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~ 377 (544)
T TIGR01842 315 GHLSVENVTIVPPG--------------GKK-PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT--SGSVRL 377 (544)
T ss_pred CeEEEEEEEEEcCC--------------CCc-cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEE
Confidence 35999999999931 223 7999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------cccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-------HVANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg 166 (610)
||+++.. ..+++.++||+|++.+++. |++||+.+... ..+.+ ++.++++..+++ +-.|+.+|
T Consensus 378 ~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~l~~gl~t~~~ 449 (544)
T TIGR01842 378 DGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGE---NADPE----KIIEAAKLAGVHELILRLPDGYDTVIG 449 (544)
T ss_pred CCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCC---CCCHH----HHHHHHHHhChHHHHHhCccccccccC
Confidence 9998743 4578899999999999986 99999985421 11222 233333433332 22355564
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+++|++++|||||+|||+.++..+.+.|+++.. .|+|+|+++|+++ ..+.+|++++
T Consensus 450 -~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~ 525 (544)
T TIGR01842 450 -PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILV 525 (544)
T ss_pred -CCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEE
Confidence 45689999999999999999999999999999999999999999999998853 4799999999996 3578999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+.+++.
T Consensus 526 l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 526 LQDGRIARFGERDEVL 541 (544)
T ss_pred EECCEEEeeCCHHHHh
Confidence 9999999999988764
No 283
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1e-39 Score=363.75 Aligned_cols=204 Identities=25% Similarity=0.417 Sum_probs=176.3
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh----hcccceEEEEccCC---CCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI----TQFRRISGYVTQDE---VLFP 121 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~----~~~~~~~~yv~Q~~---~l~~ 121 (610)
.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++.. ...++.+||++|++ .+++
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~--~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~ 343 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRT--SGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVL 343 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCC--ceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcC
Confidence 3699999999999999999999999999999999999876 9999999998742 22456799999996 5788
Q ss_pred CCCHHHHHHHHHHhcC----C-CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEE
Q 044112 122 LLTVKETLMYSARLRL----H-VGLNRAKARVSELLKELGLE-HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLL 195 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~----~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~lll 195 (610)
.+||+||+.+...... + ...++.+++++++++.+||. +..++++ ..|||||||||+||++|+.+|++|+
T Consensus 344 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lll 418 (501)
T PRK10762 344 GMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLI 418 (501)
T ss_pred CCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999999987532110 1 12233456789999999995 6677776 5999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHH
Q 044112 196 IDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 196 lDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 419 LDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 419 LDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 9999999999999999999999975 4899999999998 58899999999999999999988765
No 284
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5.4e-40 Score=315.59 Aligned_cols=170 Identities=30% Similarity=0.582 Sum_probs=151.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
++++|+++++.. +++ .+++|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|
T Consensus 1 i~~~~l~~~~~~--------------~~~-~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g 63 (173)
T cd03246 1 LEVENVSFRYPG--------------AEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT--SGRVRLDG 63 (173)
T ss_pred CEEEEEEEEcCC--------------CCC-cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCeEEECC
Confidence 468999998831 123 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+++.. ..+++.++|++|++.+++. ||+||+ |||
T Consensus 64 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l-------------------------------------------LS~ 99 (173)
T cd03246 64 ADISQWDPNELGDHVGYLPQDDELFSG-SIAENI-------------------------------------------LSG 99 (173)
T ss_pred EEcccCCHHHHHhheEEECCCCccccC-cHHHHC-------------------------------------------cCH
Confidence 98742 3456789999999988874 999987 899
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ .+ +.+|++++|++|++
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999999975 5899999999996 35 68999999999974
No 285
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-39 Score=351.52 Aligned_cols=196 Identities=23% Similarity=0.331 Sum_probs=170.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+|+|+||++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.+. ++.+...+.+.+|++||
T Consensus 38 ~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~--sGeI~I~G~~~----------~i~~~~~l~~~lTV~En 105 (549)
T PRK13545 38 YALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN--KGTVDIKGSAA----------LIAISSGLNGQLTGIEN 105 (549)
T ss_pred eEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCC--ceEEEECCEee----------eEEeccccCCCCcHHHH
Confidence 6999999999999999999999999999999999999876 99999999752 12234456777899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
+.+..... ..+.++..++++++++.+||.+..++.+ +.||||||||++||+||+.+|++|+|||||+|||+.++
T Consensus 106 L~l~~~~~-~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr 179 (549)
T PRK13545 106 IELKGLMM-GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFT 179 (549)
T ss_pred HHhhhhhc-CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 98865432 2233445567889999999998888776 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHH
Q 044112 209 LNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHR 264 (610)
Q Consensus 209 ~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~ 264 (610)
..+++.|+++++ .|+|||++||+++ .+.++||++++|++|+++..|+++++...
T Consensus 180 ~~LlelL~el~~-~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 180 KKCLDKMNEFKE-QGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred HHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999864 5899999999997 58899999999999999999999876543
No 286
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.5e-40 Score=318.88 Aligned_cols=177 Identities=36% Similarity=0.628 Sum_probs=154.5
Q ss_pred EEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCE
Q 044112 20 RTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ 99 (610)
Q Consensus 20 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~ 99 (610)
+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+
T Consensus 1 ~~~~l~~~~----------------~~~-~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~--~G~v~~~g~ 61 (180)
T cd03214 1 EVENLSVGY----------------GGR-TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS--SGEILLDGK 61 (180)
T ss_pred CeeEEEEEE----------------CCe-eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEECCE
Confidence 468999988 234 6999999999999999999999999999999999999876 999999999
Q ss_pred eCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 100 PMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 100 ~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
++.. ..+++.++|++| +++.+|+.+..++.+ +.||||
T Consensus 62 ~~~~~~~~~~~~~i~~~~q-----------------------------------~l~~~gl~~~~~~~~-----~~LS~G 101 (180)
T cd03214 62 DLASLSPKELARKIAYVPQ-----------------------------------ALELLGLAHLADRPF-----NELSGG 101 (180)
T ss_pred ECCcCCHHHHHHHHhHHHH-----------------------------------HHHHcCCHhHhcCCc-----ccCCHH
Confidence 8742 234456788887 566777776666554 689999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|+++|+++ ++.+++|++++|++|++++.|
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999999997544789999999998 477999999999999987653
No 287
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.1e-39 Score=322.19 Aligned_cols=199 Identities=24% Similarity=0.375 Sum_probs=165.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|+++++.. ..+ .+++|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++
T Consensus 6 ~l~~~~l~~~~~~--------------~~~-~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~--~G~i~~~ 68 (207)
T cd03369 6 EIEVENLSVRYAP--------------DLP-PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE--EGKIEID 68 (207)
T ss_pred eEEEEEEEEEeCC--------------CCc-ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCeEEEC
Confidence 4889999999831 123 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
|+++.. ...++.++|++|++.+++ .||+||+.+.. .... +.+.+.++ + +. .+..||
T Consensus 69 g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~----~~~~----~~~~~~l~---~----~~-----~~~~LS 127 (207)
T cd03369 69 GIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD----EYSD----EEIYGALR---V----SE-----GGLNLS 127 (207)
T ss_pred CEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC----CCCH----HHHHHHhh---c----cC-----CCCcCC
Confidence 998632 345678999999998887 49999996531 1111 22333333 2 22 346999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
||||||++|||+|+.+|++++|||||+|||+.++..+++.|+++. + |+|+|++||+++. +.. +|++++|++|+++.
T Consensus 128 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~ 203 (207)
T cd03369 128 QGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-T-NSTILTIAHRLRT-IID-YDKILVMDAGEVKE 203 (207)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999984 3 8999999999974 544 99999999999988
Q ss_pred EcCh
Q 044112 255 HGSL 258 (610)
Q Consensus 255 ~g~~ 258 (610)
.|++
T Consensus 204 ~g~~ 207 (207)
T cd03369 204 YDHP 207 (207)
T ss_pred cCCC
Confidence 8763
No 288
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=7e-40 Score=316.20 Aligned_cols=176 Identities=31% Similarity=0.546 Sum_probs=155.2
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++.. ..+ .+++|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|
T Consensus 1 i~~~~~~~~~~~--------------~~~-~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~g 63 (178)
T cd03247 1 LSINNVSFSYPE--------------QEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDG 63 (178)
T ss_pred CEEEEEEEEeCC--------------CCc-cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCEEEECC
Confidence 468999998831 113 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 99 QPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 99 ~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
+++.. ..+++.++|++|++.+++ .|++||+ +..||||
T Consensus 64 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i----------------------------------------~~~LS~G 102 (178)
T cd03247 64 VPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL----------------------------------------GRRFSGG 102 (178)
T ss_pred EEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh----------------------------------------cccCCHH
Confidence 97642 345677999999998876 6999987 1589999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||++|||+|+.+|++++|||||+|||+.++..+++.|++++ + +.|||+++|+++. + ..+|++++|++|++++.|
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-K-DKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999999985 3 7899999999974 5 579999999999998754
No 289
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1e-39 Score=343.89 Aligned_cols=188 Identities=33% Similarity=0.520 Sum_probs=167.5
Q ss_pred EECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Q 044112 66 IVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRA 144 (610)
Q Consensus 66 ilG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~ 144 (610)
|+||||||||||||+|+|+.+|+ +|+|.++|+++.. ...++.++|++|++.+++.+||+||+.|+.+.+ +.+.++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~--~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCC--ceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHHHH
Confidence 68999999999999999999877 9999999998743 234567999999999999999999999986543 2233445
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 044112 145 KARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGK 224 (610)
Q Consensus 145 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~ 224 (610)
+++++++++.+||.+..++.+ ++|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|++++++.|+
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 (325)
T ss_pred HHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 677899999999998888776 699999999999999999999999999999999999999999999999876689
Q ss_pred EEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 225 TIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 225 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
|||++||+++ ++.+++|++++|++|+++..|+++++.
T Consensus 153 tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 153 TFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999997 588999999999999999999998764
No 290
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=9.2e-40 Score=326.68 Aligned_cols=195 Identities=32% Similarity=0.504 Sum_probs=166.8
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCC--CCCCHHHHHHHHH
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLF--PLLTVKETLMYSA 133 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTv~E~l~~~~ 133 (610)
+++++||+++|+||||||||||+++|+|+.+++ +|+|.++|+++. ..++.++|++|++.++ ..+|+.||+.++.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPA--KGTVKVAGASPG--KGWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECCccch--HhhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 468999999999999999999999999999876 999999998763 3456799999998764 3479999998763
Q ss_pred Hhc---CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044112 134 RLR---LHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALN 210 (610)
Q Consensus 134 ~~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 210 (610)
... .....++.+++++++++.+|+++..++.+ .+||||||||++||++|+.+|+++++||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 211 01112233456889999999988777766 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 211 VASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 211 i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
+.+.|+++++ .|+|||++||+++ ++.+.+|+++++ +|++++.|+++++.
T Consensus 152 l~~~l~~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 152 LTELFIELAG-AGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHH-cCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999875 5899999999998 488999999999 89999999988753
No 291
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=6.4e-40 Score=378.86 Aligned_cols=216 Identities=30% Similarity=0.504 Sum_probs=183.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|++++|+. +.+ .+|+|+|+++++||.+||+|+||||||||+|+|+|+++|+ +|+|.+
T Consensus 454 ~~i~~~~vsf~y~~--------------~~~-~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~--~G~I~i 516 (694)
T TIGR01846 454 GAITFENIRFRYAP--------------DSP-EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLV 516 (694)
T ss_pred CeEEEEEEEEEcCC--------------CCc-cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEE
Confidence 35999999999931 223 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||++++. .++|+.++||+|++.+++. |++||+.++.. ..+ ++++.++++..++.+ -.|+.+|
T Consensus 517 dg~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~gl~t~i~ 588 (694)
T TIGR01846 517 DGVDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP---GAP----FEHVIHAAKLAGAHDFISELPQGYNTEVG 588 (694)
T ss_pred CCEehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC---CCC----HHHHHHHHHHcChHHHHHhCcCccCcEec
Confidence 9998753 5678899999999999885 99999987421 112 234555566655543 3467775
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+++|++++||||||+||+.++..+++.|+++. .++|+|++||+++. .+.+|++++
T Consensus 589 -~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~--~~~~d~ii~ 663 (694)
T TIGR01846 589 -EKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRLST--VRACDRIIV 663 (694)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCChHH--HHhCCEEEE
Confidence 3468999999999999999999999999999999999999999999999984 47999999999963 467999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+.+++.
T Consensus 664 l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 664 LEKGQIAESGRHEELL 679 (694)
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999998764
No 292
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.7e-41 Score=307.77 Aligned_cols=195 Identities=31% Similarity=0.506 Sum_probs=175.7
Q ss_pred ccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCC---hhcccceEEEEccCCCCCC
Q 044112 45 PPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN---ITQFRRISGYVTQDEVLFP 121 (610)
Q Consensus 45 ~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~---~~~~~~~~~yv~Q~~~l~~ 121 (610)
+.. .||+++|+.+++||..+|.||||||||||+|+++.+.+|+ +|++++.|++++ ++.+|+.++|+.|.+.+|+
T Consensus 14 ~~a-~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~--~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 14 GDA-KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT--SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred CCC-eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCC--CceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 344 7999999999999999999999999999999999999987 999999999985 3678999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCC
Q 044112 122 LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPT 200 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt 200 (610)
. ||++|+.|.-++|...+ ..++..++|+++++.+. .++.+ ..||||||||++|+|.|..-|+||+|||||
T Consensus 91 ~-tVeDNlifP~~~r~rr~---dr~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~P~ILLLDE~T 161 (223)
T COG4619 91 D-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFMPKILLLDEIT 161 (223)
T ss_pred c-chhhccccchHHhccCC---ChHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcCCceEEecCch
Confidence 7 99999999988775433 34567789999999764 45554 699999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 201 SGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 201 sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|.||+.+++.|-++|.++-+++++.|+.+|||++ +..+.+||++-+..|++
T Consensus 162 sALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~ 212 (223)
T COG4619 162 SALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212 (223)
T ss_pred hhcChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence 9999999999999999998788999999999998 46899999999999875
No 293
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-40 Score=364.04 Aligned_cols=204 Identities=22% Similarity=0.410 Sum_probs=176.3
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh----hcccceEEEEccCC---CCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI----TQFRRISGYVTQDE---VLFP 121 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~----~~~~~~~~yv~Q~~---~l~~ 121 (610)
.+++|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++.. ...++.++|++|++ .+++
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~--~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 344 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRT--AGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIP 344 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCC--CceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcC
Confidence 5899999999999999999999999999999999999876 9999999998642 23456799999996 4889
Q ss_pred CCCHHHHHHHHHHhcC---C--CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEE
Q 044112 122 LLTVKETLMYSARLRL---H--VGLNRAKARVSELLKELGLE-HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLL 195 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~---~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~lll 195 (610)
.+|+.||+.++..... . ....+.+++++++++.+|+. +..++++ ..|||||||||+||++|+.+|++||
T Consensus 345 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lll 419 (501)
T PRK11288 345 VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVIL 419 (501)
T ss_pred CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEE
Confidence 9999999987542211 0 01223345788999999994 6778777 5999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHH
Q 044112 196 IDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 196 lDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
|||||+|||+.++..+++.|+++++ .|.|||++|||++ ++.++||++++|++|++++.|+++++
T Consensus 420 LDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 420 LDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred EcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999975 5899999999998 58899999999999999999988763
No 294
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-39 Score=310.37 Aligned_cols=232 Identities=27% Similarity=0.356 Sum_probs=203.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||++++. +++ .||++||+++++||+.+||||||||||||.++|+|.-....++|+|.+
T Consensus 2 ~~L~I~dLhv~v~---------------~~k-eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~ 65 (251)
T COG0396 2 MMLEIKDLHVEVE---------------GKK-EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65 (251)
T ss_pred ceeEEeeeEEEec---------------Cch-hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEE
Confidence 5799999999993 224 799999999999999999999999999999999999655567999999
Q ss_pred CCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHcCCcc-cccccccCCC
Q 044112 97 NEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG--LNRAKARVSELLKELGLEH-VANVRIGGES 169 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~--~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 169 (610)
+|+++.. ++.|.-+...+|.|.=+|..|+.+.|..+.+.+.+.. ..+..+++++.++.+++.+ .+++.+.
T Consensus 66 ~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN--- 142 (251)
T COG0396 66 DGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN--- 142 (251)
T ss_pred CCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC---
Confidence 9999853 4456678899999999999999999998876543221 2355678899999999986 7788875
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc--ceEEEe
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF--DQILLL 247 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~--D~v~~L 247 (610)
.++|||||||..|+..++.+|++.+||||-||||..+-+.+.+.++++.. .|.+++++||..+ +.++. |++.+|
T Consensus 143 -~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~r--ll~~i~pD~vhvl 218 (251)
T COG0396 143 -EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQR--LLDYIKPDKVHVL 218 (251)
T ss_pred -CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHHH--HHhhcCCCEEEEE
Confidence 69999999999999999999999999999999999999999999999974 5999999999864 67777 999999
Q ss_pred eCCeEEEEcChhHHHHHHHHcCCCC
Q 044112 248 SKGTVVHHGSLDLLEHRLRIAGHSI 272 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~~~~~~g~~~ 272 (610)
.+|+|+..|.+ ++.++++..||.|
T Consensus 219 ~~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 219 YDGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred ECCEEEecCCH-HHHHHHHHhchHH
Confidence 99999999999 8888999888865
No 295
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.4e-39 Score=368.79 Aligned_cols=217 Identities=29% Similarity=0.476 Sum_probs=183.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|++++|+. ...+ .+|+|+|++++|||.++|+||||||||||+|+|+|+++|. +|+|.+
T Consensus 336 ~~i~~~~v~f~y~~-------------~~~~-~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~--~G~I~i 399 (576)
T TIGR02204 336 GEIEFEQVNFAYPA-------------RPDQ-PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ--SGRILL 399 (576)
T ss_pred ceEEEEEEEEECCC-------------CCCC-ccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC--CCEEEE
Confidence 35999999999941 1123 6999999999999999999999999999999999999886 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg 166 (610)
||.+++. ..+++.++|+||++.+|+. |++||+.++. +.. .+++++++++..|+.+. .|+.+|
T Consensus 400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~~~---~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~ 471 (576)
T TIGR02204 400 DGVDLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGR----PDA---TDEEVEAAARAAHAHEFISALPEGYDTYLG 471 (576)
T ss_pred CCEEHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCC----CCC---CHHHHHHHHHHcCcHHHHHhCCCCCCceeC
Confidence 9998753 5677889999999999876 9999998752 111 13456667777776532 355665
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++||||++.+|++++||||||+||+.+++.+++.|+++. .++|+|++||+++ ..+.+|++++
T Consensus 472 -~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~~--~~~~~d~vi~ 546 (576)
T TIGR02204 472 -ERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRLA--TVLKADRIVV 546 (576)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecchH--HHHhCCEEEE
Confidence 3467899999999999999999999999999999999999999999999985 3799999999995 4678999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|+++..|+.++..
T Consensus 547 l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 547 MDQGRIVAQGTHAELI 562 (576)
T ss_pred EECCEEEeeecHHHHH
Confidence 9999999999988753
No 296
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=362.38 Aligned_cols=220 Identities=28% Similarity=0.410 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++|.. .++.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+.+++ +|+|.+|
T Consensus 4 ~l~~~nl~~~y~~------------~~~~~-~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~--~G~i~~~ 68 (648)
T PRK10535 4 LLELKDIRRSYPS------------GEEQV-EVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPT--SGTYRVA 68 (648)
T ss_pred EEEEeeEEEEeCC------------CCCCe-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEEEC
Confidence 6999999999931 01223 6999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 98 EQPMNI---TQ----FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~---~~----~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
|+++.. ++ .++.++|++|+..+++.+|+.||+.+..... ....++.++++.++++.+||.+..|+.+
T Consensus 69 g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~lgl~~~~~~~~----- 142 (648)
T PRK10535 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRLGLEDRVEYQP----- 142 (648)
T ss_pred CEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhhhcCCc-----
Confidence 998753 22 2467999999999999999999999865432 2233455678899999999998887776
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
..||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.|+++++ .|+|+|++||+++. + +.||++++|++|
T Consensus 143 ~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~~~-~-~~~d~i~~l~~G 219 (648)
T PRK10535 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDPQV-A-AQAERVIEIRDG 219 (648)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCHHH-H-HhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999999864 58999999999873 4 679999999999
Q ss_pred eEEEEcChhHH
Q 044112 251 TVVHHGSLDLL 261 (610)
Q Consensus 251 ~iv~~g~~~~~ 261 (610)
++++.|++++.
T Consensus 220 ~i~~~g~~~~~ 230 (648)
T PRK10535 220 EIVRNPPAQEK 230 (648)
T ss_pred EEEeecCcccc
Confidence 99999988653
No 297
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-39 Score=367.62 Aligned_cols=215 Identities=23% Similarity=0.446 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|++++|+. +.+ .+|+|+|+++++||.++|+||||||||||+++|+|+++|+ +|+|.+|
T Consensus 313 ~I~~~~v~~~y~~--------------~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~--~G~i~~~ 375 (569)
T PRK10789 313 ELDVNIRQFTYPQ--------------TDH-PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS--EGDIRFH 375 (569)
T ss_pred cEEEEEEEEECCC--------------CCC-ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC--CCEEEEC
Confidence 5899999999831 223 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-------HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~ 167 (610)
|+++.. ..+++.++|++|++.+|+. |++||+.++.. ..+ +++++++++..++. +-.|+.+|
T Consensus 376 g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~---~~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~- 446 (569)
T PRK10789 376 DIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRP---DAT----QQEIEHVARLASVHDDILRLPQGYDTEVG- 446 (569)
T ss_pred CEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCcCcccceec-
Confidence 998743 5678889999999999986 99999987521 112 23445556665554 33466675
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+++|++++|||||++||+.+...+.+.|+++. .|+|+|+++|+++ ..+.+|++++|
T Consensus 447 ~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~~--~~~~~d~i~~l 522 (569)
T PRK10789 447 ERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRLS--ALTEASEILVM 522 (569)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecchh--HHHcCCEEEEE
Confidence 3567899999999999999999999999999999999999999999999874 4899999999996 35779999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+.+++.
T Consensus 523 ~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 523 QHGHIAQRGNHDQLA 537 (569)
T ss_pred eCCEEEEecCHHHHH
Confidence 999999999988764
No 298
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.2e-39 Score=367.08 Aligned_cols=214 Identities=26% Similarity=0.436 Sum_probs=178.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.++++|++++|+ +.+ .+|+|+|+++++||.++|+||||||||||+++|+|+++|+ +|+|.+|
T Consensus 334 ~i~~~~v~~~y~---------------~~~-~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~ 395 (585)
T TIGR01192 334 AVEFRHITFEFA---------------NSS-QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT--VGQILID 395 (585)
T ss_pred eEEEEEEEEECC---------------CCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC--CCEEEEC
Confidence 599999999993 223 6899999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~ 167 (610)
|.++.. ..+++.++||+|++.+++ .|++||+.++.. ..+.+ ++.++++..++.+ -.|+.+|
T Consensus 396 g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~---~~~~~----~~~~a~~~~~~~~~i~~l~~g~~t~~~- 466 (585)
T TIGR01192 396 GIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGRE---GATDE----EVYEAAKAAAAHDFILKRSNGYDTLVG- 466 (585)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCC---CCCHH----HHHHHHHHhCcHHHHHhccccccchhc-
Confidence 998743 567889999999999887 599999987521 11222 2333444444332 2355554
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++. .++|+|+++|+++. + +.+|++++|
T Consensus 467 ~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~~~-~-~~~d~i~~l 542 (585)
T TIGR01192 467 ERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRLST-V-RNADLVLFL 542 (585)
T ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcChHH-H-HcCCEEEEE
Confidence 4567899999999999999999999999999999999999999999999874 48999999999963 4 779999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|+++..|+.+++.
T Consensus 543 ~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 543 DQGRLIEKGSFQELI 557 (585)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988764
No 299
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=341.02 Aligned_cols=215 Identities=30% Similarity=0.465 Sum_probs=193.6
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++.+|+++.| +.- .+++|||+++++||+.||+|+||||||||+++|.|.++|+ +|+|.+
T Consensus 3 ~~l~~~~itK~f----------------~~~-~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~--~GeI~v 63 (501)
T COG3845 3 PALEMRGITKRF----------------PGV-VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD--SGEIRV 63 (501)
T ss_pred ceEEEeccEEEc----------------CCE-EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC--cceEEE
Confidence 458899999999 334 7999999999999999999999999999999999999988 999999
Q ss_pred CCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 97 NEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLR-LH-VGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~-~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
+|+++.. ...+..||+|.|+..|+|++||.||+.++..-. .+ .+.++.+++++++.+.+||.-..|.+|+
T Consensus 64 ~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~---- 139 (501)
T COG3845 64 DGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA---- 139 (501)
T ss_pred CCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee----
Confidence 9999742 345677999999999999999999999987532 11 2566778899999999999988888884
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
.||-||||||.|-++|..+|++|+|||||+-|-|....+++++|+++++ .|+|||++||-++ |+.++|||+.+|.+|
T Consensus 140 -dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL~-Ev~~iaDrvTVLR~G 216 (501)
T COG3845 140 -DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKLK-EVMAIADRVTVLRRG 216 (501)
T ss_pred -cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccHH-HHHHhhCeeEEEeCC
Confidence 8999999999999999999999999999999999999999999999985 6999999999998 799999999999999
Q ss_pred eEEEEcC
Q 044112 251 TVVHHGS 257 (610)
Q Consensus 251 ~iv~~g~ 257 (610)
+++..-+
T Consensus 217 kvvgt~~ 223 (501)
T COG3845 217 KVVGTVD 223 (501)
T ss_pred eEEeeec
Confidence 9876554
No 300
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.9e-40 Score=320.99 Aligned_cols=241 Identities=28% Similarity=0.392 Sum_probs=201.6
Q ss_pred eeEEEEeEEEEEeccccccc--c-cc-cccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee
Q 044112 17 YRIRTKKLTYRSFRGVDEFN--W-FC-SWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG 92 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~--~-~~-~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G 92 (610)
.++.++||++.|......+. + .. .++.+.+...+++|+||++++|++++.+|||||||||+||+|+|++.|. +|
T Consensus 2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~--~G 79 (325)
T COG4586 2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT--SG 79 (325)
T ss_pred ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccC--CC
Confidence 35788999988864433321 1 00 1122222226899999999999999999999999999999999999987 99
Q ss_pred EEEECCEeCC--hhcccceEEEEc-cCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 93 SVLVNEQPMN--ITQFRRISGYVT-QDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 93 ~I~~~g~~~~--~~~~~~~~~yv~-Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
+|.++|...- .+++-+.+++|+ |--.+...+.+.|.+.....++ ..+.++.+++.+.+.+.|+|++..+.++
T Consensus 80 ~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy-~Ipd~~F~~r~~~l~eiLdl~~~lk~~v---- 154 (325)
T COG4586 80 KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY-EIPDDEFAERLDFLTEILDLEGFLKWPV---- 154 (325)
T ss_pred eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH-hCCHHHHHHHHHHHHHHhcchhhhhhhh----
Confidence 9999998753 244556778876 4456666777888888766553 3356777889999999999999988887
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+.||-|||.|+.||.+|+++|+||||||||-|||..++.++.+.|++..++.+.||+.+||+.+ ++.++||||++++.
T Consensus 155 -r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~ 232 (325)
T COG4586 155 -RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ 232 (325)
T ss_pred -hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC
Confidence 7999999999999999999999999999999999999999999999999999999999999998 59999999999999
Q ss_pred CeEEEEcChhHHHHHHH
Q 044112 250 GTVVHHGSLDLLEHRLR 266 (610)
Q Consensus 250 G~iv~~g~~~~~~~~~~ 266 (610)
|+++|+|+.+++.+.|.
T Consensus 233 Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 233 GQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CcEeecccHHHHHHHhC
Confidence 99999999998877654
No 301
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.9e-39 Score=359.61 Aligned_cols=203 Identities=24% Similarity=0.419 Sum_probs=173.6
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---h-cccceEEEEccCC---CCCCC
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---T-QFRRISGYVTQDE---VLFPL 122 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~-~~~~~~~yv~Q~~---~l~~~ 122 (610)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|+ +|+|.++|+++.. . ..++.++|++|++ .+++.
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~--~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR--GGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC--CcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCC
Confidence 599999999999999999999999999999999999876 9999999998743 1 2345799999984 48888
Q ss_pred CCHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCC
Q 044112 123 LTVKETLMYSAR--LRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEP 199 (610)
Q Consensus 123 lTv~E~l~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP 199 (610)
+|+.||+..... ..........+++++++++.+||. +..++++ +.|||||||||+||++|+.+|++||||||
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEP 430 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEP 430 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCC
Confidence 999999964311 111111223345788999999997 6778776 59999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHH
Q 044112 200 TSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 200 tsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
|+|||+.++..+.+.|+++++ .|.|||++|||++ ++.++||++++|++|+++..|+++++
T Consensus 431 t~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 431 TRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999976 4899999999998 58899999999999999999887653
No 302
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.7e-39 Score=317.08 Aligned_cols=194 Identities=30% Similarity=0.474 Sum_probs=154.5
Q ss_pred EEEEeEEEEEecccccccccccccccc--cccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKP--PAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~--~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
|+++||++++.. ++ .+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+
T Consensus 1 l~~~~l~~~~~~-------------~~~~~~-~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~--~G~i~~ 64 (204)
T cd03250 1 ISVEDASFTWDS-------------GEQETS-FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL--SGSVSV 64 (204)
T ss_pred CEEeEEEEecCC-------------CCcccc-ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CCeEEE
Confidence 468999999831 11 13 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCC
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN-------VRIGGES 169 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~ 169 (610)
+| .++|++|++.+++ .|++||+.+.... .. +...+.++.+++.+..+ +.. +..
T Consensus 65 ~g----------~i~~~~q~~~l~~-~t~~enl~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 124 (204)
T cd03250 65 PG----------SIAYVSQEPWIQN-GTIRENILFGKPF----DE----ERYEKVIKACALEPDLEILPDGDLTEI-GEK 124 (204)
T ss_pred cC----------EEEEEecCchhcc-CcHHHHhccCCCc----CH----HHHHHHHHHcCcHHHHHhccCccccee-cCC
Confidence 98 5899999998875 6999999875321 11 12223333333322111 111 123
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS-LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+..||||||||++||++|+.+|++++|||||+|||+.++..+.+ +++++++ .|+|||++||+++. +.. +|++++|+
T Consensus 125 ~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~~~-~~~-~d~i~~l~ 201 (204)
T cd03250 125 GINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQLQL-LPH-ADQIVVLD 201 (204)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCHHH-Hhh-CCEEEEEe
Confidence 57899999999999999999999999999999999999999998 5666654 48999999999973 555 99999999
Q ss_pred CCe
Q 044112 249 KGT 251 (610)
Q Consensus 249 ~G~ 251 (610)
+|+
T Consensus 202 ~G~ 204 (204)
T cd03250 202 NGR 204 (204)
T ss_pred CCC
Confidence 985
No 303
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.3e-39 Score=395.55 Aligned_cols=220 Identities=26% Similarity=0.478 Sum_probs=186.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---------
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR--------- 88 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~--------- 88 (610)
.|+++||+++|+. .+.+ .+|+|+|+++++||.+||+||||||||||+++|.|+++|.
T Consensus 1165 ~I~f~nVsF~Y~~-------------~~~~-~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~ 1230 (1466)
T PTZ00265 1165 KIEIMDVNFRYIS-------------RPNV-PIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKN 1230 (1466)
T ss_pred eEEEEEEEEECCC-------------CCCC-ccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccc
Confidence 5999999999942 1223 6999999999999999999999999999999999999872
Q ss_pred -------------------------------------------CceeEEEECCEeCC---hhcccceEEEEccCCCCCCC
Q 044112 89 -------------------------------------------RVSGSVLVNEQPMN---ITQFRRISGYVTQDEVLFPL 122 (610)
Q Consensus 89 -------------------------------------------~~~G~I~~~g~~~~---~~~~~~~~~yv~Q~~~l~~~ 122 (610)
+.+|+|++||.++. .+.+|+.+|||+|++.+|+
T Consensus 1231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~- 1309 (1466)
T PTZ00265 1231 EHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN- 1309 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-
Confidence 14899999999974 3678899999999999997
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------cccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEE
Q 044112 123 LTVKETLMYSARLRLHVGLNRAKARVSELLKELGL-------EHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLL 195 (610)
Q Consensus 123 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~lll 195 (610)
.|++|||.++.. ..+ ++.++++++..++ .+-.||.|| +.+..||||||||++|||||+++|+||+
T Consensus 1310 gTIreNI~~g~~---~at----~eeI~~A~k~A~l~~fI~~LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILL 1381 (1466)
T PTZ00265 1310 MSIYENIKFGKE---DAT----REDVKRACKFAAIDEFIESLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILL 1381 (1466)
T ss_pred ccHHHHHhcCCC---CCC----HHHHHHHHHHcCCHHHHHhCccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 499999998731 112 2345566666554 345688897 6678899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC----CeEE-EEcChhHHH
Q 044112 196 IDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK----GTVV-HHGSLDLLE 262 (610)
Q Consensus 196 lDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~----G~iv-~~g~~~~~~ 262 (610)
||||||+||+.+.+.|.+.|+++.+..++|+|+++|+++ ..+.||+|++|++ |+++ ..|+.+++.
T Consensus 1382 LDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1382 LDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 999999999999999999999885335899999999996 4678999999999 9955 899998875
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-38 Score=312.34 Aligned_cols=193 Identities=18% Similarity=0.291 Sum_probs=163.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|+++++ +.+ .+++ +|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++
T Consensus 1 ~l~~~~l~~~~----------------~~~-~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~ 60 (195)
T PRK13541 1 MLSLHQLQFNI----------------EQK-NLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPS--SGNIYYK 60 (195)
T ss_pred CeEEEEeeEEE----------------CCc-EEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEC
Confidence 37899999998 223 4565 99999999999999999999999999999999876 9999999
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
|.++.... ++.++|++|++.+++.+||+||+.+..... . ..++++++++.+++.+..++.+ +.|||||
T Consensus 61 g~~i~~~~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 128 (195)
T PRK13541 61 NCNINNIA-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGM 128 (195)
T ss_pred CcccChhh-hhhEEeccCCcCCCccCCHHHHHHHHHHhc-c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHH
Confidence 99875322 356899999988888899999998865432 1 2346788899999988777765 5999999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
|||++||++++.+|++++|||||+|||+.++..+.+.|++.. +.|+|||+++|+++. .+.+|.+.
T Consensus 129 ~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~~tiii~sh~~~~--i~~~~~~~ 193 (195)
T PRK13541 129 QKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKA-NSGGIVLLSSHLESS--IKSAQILQ 193 (195)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-hCCCEEEEEeCCccc--cchhheec
Confidence 999999999999999999999999999999999999998765 458999999999973 35566553
No 305
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-38 Score=317.30 Aligned_cols=201 Identities=23% Similarity=0.393 Sum_probs=160.5
Q ss_pred EEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCE
Q 044112 20 RTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ 99 (610)
Q Consensus 20 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~ 99 (610)
.+.|+.+.+. +.+ .+++|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|.++|+
T Consensus 2 ~~~~~~~~~~---------------~~~-~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~--~G~i~~~g~ 63 (218)
T cd03290 2 QVTNGYFSWG---------------SGL-ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTL--EGKVHWSNK 63 (218)
T ss_pred eeeeeEEecC---------------CCC-cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC--CCeEEECCc
Confidence 4577777772 234 7999999999999999999999999999999999999876 999999998
Q ss_pred eCCh-------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccc-------cc
Q 044112 100 PMNI-------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANV-------RI 165 (610)
Q Consensus 100 ~~~~-------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~v 165 (610)
++.. ...++.++|++|++.++ ..|++||+.+.... .. ++..++++.++|.+..+. ..
T Consensus 64 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (218)
T cd03290 64 NESEPSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF----NK----QRYKAVTDACSLQPDIDLLPFGDQTEI 134 (218)
T ss_pred ccccccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC----CH----HHHHHHHHHhCcHHHHHhCcCccccCc
Confidence 7632 12346799999999887 57999999875321 11 223455666666443221 11
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS--LLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~--~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
+..+..||||||||++||++|+.+|++++|||||+|||+.++..+++ +++.+. +.|+|+|++||+++. + ..+|+
T Consensus 135 -~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~-~~~~tii~~sH~~~~-~-~~~d~ 210 (218)
T cd03290 135 -GERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ-DDKRTLVLVTHKLQY-L-PHADW 210 (218)
T ss_pred -ccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh-cCCCEEEEEeCChHH-H-hhCCE
Confidence 12357999999999999999999999999999999999999999998 666664 458999999999974 5 57999
Q ss_pred EEEeeCCe
Q 044112 244 ILLLSKGT 251 (610)
Q Consensus 244 v~~L~~G~ 251 (610)
+++|++|.
T Consensus 211 i~~l~~G~ 218 (218)
T cd03290 211 IIAMKDGS 218 (218)
T ss_pred EEEecCCC
Confidence 99999884
No 306
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-39 Score=306.31 Aligned_cols=168 Identities=36% Similarity=0.636 Sum_probs=148.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++.. +.. .+++|+|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|
T Consensus 1 l~~~~l~~~~~~--------------~~~-~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~--~G~i~~~g 63 (171)
T cd03228 1 IEFKNVSFSYPG--------------RPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT--SGEILIDG 63 (171)
T ss_pred CEEEEEEEEcCC--------------CCc-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CCEEEECC
Confidence 468899998831 113 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+++.. ..+++.++|++|++.+++ .|++||+ |||
T Consensus 64 ~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-------------------------------------------LS~ 99 (171)
T cd03228 64 VDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-------------------------------------------LSG 99 (171)
T ss_pred EEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-------------------------------------------hCH
Confidence 98642 345677999999998776 5998886 999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. + ++|||++||+++. +.. +|++++|++|+
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA-K-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc-C-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999999999985 3 6999999999974 655 99999999885
No 307
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.1e-39 Score=303.16 Aligned_cols=219 Identities=31% Similarity=0.467 Sum_probs=193.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+.+|||+++ +.- .+|+|+||++.+||+-+|+|||||||||+|++|+|..+|+ +|+|++
T Consensus 4 ~iL~~~~vsVsF----------------~GF-~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~--~G~v~f 64 (249)
T COG4674 4 IILYLDGVSVSF----------------GGF-KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ--EGEVLF 64 (249)
T ss_pred ceEEEeceEEEE----------------cce-eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCC--cceEEE
Confidence 568999999999 333 6999999999999999999999999999999999998876 999999
Q ss_pred CC-EeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHcCCccccccc
Q 044112 97 NE-QPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV-------GLNRAKARVSELLKELGLEHVANVR 164 (610)
Q Consensus 97 ~g-~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~-------~~~~~~~~v~~~l~~lgL~~~~~~~ 164 (610)
+| .+++. .-.|..||--+|.+..|+.+||+|||+.+.+...+. ...+.+++++++|...||.+.++..
T Consensus 65 ~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~ 144 (249)
T COG4674 65 DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRL 144 (249)
T ss_pred cCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhh
Confidence 99 66643 224556899999999999999999999986532211 2234567899999999999999988
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
.+ .||.||||++.|++.++++|++|++|||++|+-.+...+..++|+++|. +++|+++.||+.. +-+++|+|
T Consensus 145 A~-----~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM~F-vr~~A~~V 216 (249)
T COG4674 145 AA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDMGF-VREIADKV 216 (249)
T ss_pred hh-----hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccHHH-HHHhhhee
Confidence 75 8999999999999999999999999999999999999999999999984 5899999999996 89999999
Q ss_pred EEeeCCeEEEEcChhHHH
Q 044112 245 LLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~~ 262 (610)
.+|++|.+..+|+.+++.
T Consensus 217 TVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 217 TVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred EEEeccceeecccHHHhh
Confidence 999999999999998764
No 308
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=6.4e-39 Score=359.79 Aligned_cols=188 Identities=30% Similarity=0.481 Sum_probs=162.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++||+++|+ +++ .+|+|+|+++++||.+||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 333 ~~I~~~~vsf~Y~---------------~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~i 394 (529)
T TIGR02868 333 PTLELRDLSFGYP---------------GSP-PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPL--QGEVTL 394 (529)
T ss_pred ceEEEEEEEEecC---------------CCC-ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEE
Confidence 3599999999993 223 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCC--hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 044112 97 NEQPMN--ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIGG 167 (610)
Q Consensus 97 ~g~~~~--~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~ 167 (610)
||.+++ .+++|+.++||+|++.+|+. |++||+.++. +. ..+++++++++..++++ -.||.+|
T Consensus 395 ~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ig- 465 (529)
T TIGR02868 395 DGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----PD---ATDEELWAALERVGLADWLRSLPDGLDTVLG- 465 (529)
T ss_pred CCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----CC---CCHHHHHHHHHHcCCHHHHHhCcccccchhc-
Confidence 998875 35678899999999999987 9999998862 11 12345677777777654 3478886
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
+.+..||||||||++|||||+.+|++++||||||+||+.+...+.+.|+++. .++|+|+++|++
T Consensus 466 e~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 466 EGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred cccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 4567899999999999999999999999999999999999999999999864 479999999985
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.1e-38 Score=301.71 Aligned_cols=158 Identities=30% Similarity=0.494 Sum_probs=143.2
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.| +.+ ++++|+|+++++||+++|+||||||||||+++|+|+.+|. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~--~G~v~~~g 61 (163)
T cd03216 1 LELRGITKRF----------------GGV-KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD--SGEILVDG 61 (163)
T ss_pred CEEEEEEEEE----------------CCe-EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEECC
Confidence 4689999998 334 6999999999999999999999999999999999999876 99999999
Q ss_pred EeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 99 QPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 99 ~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
+++.. ...++.++|++| ||
T Consensus 62 ~~~~~~~~~~~~~~~i~~~~q---------------------------------------------------------LS 84 (163)
T cd03216 62 KEVSFASPRDARRAGIAMVYQ---------------------------------------------------------LS 84 (163)
T ss_pred EECCcCCHHHHHhcCeEEEEe---------------------------------------------------------cC
Confidence 98753 124567899988 99
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++.+.+|++++|++|++++
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999999974 4899999999997 4788999999999999874
No 310
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.1e-38 Score=354.75 Aligned_cols=218 Identities=22% Similarity=0.331 Sum_probs=177.0
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++|+++.| +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+.++ ..+|+|.
T Consensus 258 ~~~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~ 319 (490)
T PRK10938 258 EPRIVLNNGVVSY----------------NDR-PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLT 319 (490)
T ss_pred CceEEEeceEEEE----------------CCe-eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEE
Confidence 3469999999998 334 699999999999999999999999999999999998754 1389999
Q ss_pred ECCEeCCh----hcccceEEEEccCCCCCC--CCCHHHHHHHHHHh--cC-CCCHHHHHHHHHHHHHHcCCcc-cccccc
Q 044112 96 VNEQPMNI----TQFRRISGYVTQDEVLFP--LLTVKETLMYSARL--RL-HVGLNRAKARVSELLKELGLEH-VANVRI 165 (610)
Q Consensus 96 ~~g~~~~~----~~~~~~~~yv~Q~~~l~~--~lTv~E~l~~~~~~--~~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~v 165 (610)
++|+++.. ...++.++|++|++.+++ ..|++|++.++... .. ....++.+++++++++.+||.+ ..++++
T Consensus 320 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 399 (490)
T PRK10938 320 LFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPF 399 (490)
T ss_pred EecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCch
Confidence 99987532 224567999999976544 35777776543211 01 1112233567899999999987 777776
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH-hcceE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE-LFDQI 244 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~-~~D~v 244 (610)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.+.|||++||+++ ++.+ ++|++
T Consensus 400 -----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v 473 (490)
T PRK10938 400 -----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRL 473 (490)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeE
Confidence 5999999999999999999999999999999999999999999999998653457999999997 4666 58999
Q ss_pred EEeeCCeEEEEcC
Q 044112 245 LLLSKGTVVHHGS 257 (610)
Q Consensus 245 ~~L~~G~iv~~g~ 257 (610)
++|++|++++...
T Consensus 474 ~~l~~G~i~~~~~ 486 (490)
T PRK10938 474 EFVPDGDIYRYVQ 486 (490)
T ss_pred EEecCCceEEeec
Confidence 9999999887643
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-38 Score=354.89 Aligned_cols=208 Identities=25% Similarity=0.370 Sum_probs=176.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++|++++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 1 ml~i~~ls~~~----------------~~~-~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~--~G~i~~~ 61 (530)
T PRK15064 1 MLSTANITMQF----------------GAK-PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPS--AGNVSLD 61 (530)
T ss_pred CEEEEEEEEEe----------------CCc-EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEec
Confidence 47899999998 334 7999999999999999999999999999999999999876 9999998
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH-hc-----------CCC---C----------------HHHHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR-LR-----------LHV---G----------------LNRAKA 146 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~-~~-----------~~~---~----------------~~~~~~ 146 (610)
|. +.++|++|++.+++.+||+|++.++.. .+ .+. . ..+.++
T Consensus 62 ~~--------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (530)
T PRK15064 62 PN--------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEA 133 (530)
T ss_pred CC--------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHH
Confidence 73 358999999999999999999987531 00 000 0 012245
Q ss_pred HHHHHHHHcCCcccc-cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcE
Q 044112 147 RVSELLKELGLEHVA-NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKT 225 (610)
Q Consensus 147 ~v~~~l~~lgL~~~~-~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~t 225 (610)
+++++++.+||.+.. +.++ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|
T Consensus 134 ~~~~~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~t 204 (530)
T PRK15064 134 RAGELLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNST 204 (530)
T ss_pred HHHHHHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCe
Confidence 788999999997643 3444 59999999999999999999999999999999999999999999863 4789
Q ss_pred EEEEecCCcHHHHHhcceEEEeeCCeE-EEEcChhHHH
Q 044112 226 IVLTIHQPGFRILELFDQILLLSKGTV-VHHGSLDLLE 262 (610)
Q Consensus 226 vi~~~H~~~~~i~~~~D~v~~L~~G~i-v~~g~~~~~~ 262 (610)
||++||+++ .+.++||++++|++|++ ++.|++++..
T Consensus 205 iiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 205 MIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 999999998 48899999999999999 5889887654
No 312
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=1.9e-38 Score=334.45 Aligned_cols=227 Identities=31% Similarity=0.488 Sum_probs=192.3
Q ss_pred CCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee
Q 044112 13 RKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG 92 (610)
Q Consensus 13 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G 92 (610)
+.++-.|+++++++.-+ +.++++|+|+||.+++||.+||+||||||||||.|+|.|..+|. +|
T Consensus 329 P~P~g~L~Ve~l~~~PP---------------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~--~G 391 (580)
T COG4618 329 PAPQGALSVERLTAAPP---------------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT--SG 391 (580)
T ss_pred CCCCceeeEeeeeecCC---------------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC--CC
Confidence 44556799999998431 33338999999999999999999999999999999999999876 99
Q ss_pred EEEECCEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHHcCCccccccc
Q 044112 93 SVLVNEQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNR-----AKARVSELLKELGLEHVANVR 164 (610)
Q Consensus 93 ~I~~~g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~ 164 (610)
.|.+||.+++ .+++-++|||.|||-.||+. ||.||+.- +....+.++ +...|++++ +.+.+-.||.
T Consensus 392 ~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaR---f~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~ 465 (580)
T COG4618 392 SVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIAR---FGEEADPEKVIEAARLAGVHELI--LRLPQGYDTR 465 (580)
T ss_pred cEEecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHHh---ccccCCHHHHHHHHHHcChHHHH--HhCcCCccCc
Confidence 9999999885 36688999999999999998 99999953 221112211 122355555 3566778999
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+| +....||||||||+++||||-.+|.+++||||-|+||......+.+.|.+.. +.|.|+|+++|.|+ +...+|+|
T Consensus 466 iG-~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvviaHRPs--~L~~~Dki 541 (580)
T COG4618 466 IG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVIAHRPS--ALASVDKI 541 (580)
T ss_pred cC-CCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEEecCHH--HHhhccee
Confidence 97 5678999999999999999999999999999999999999999999999985 56999999999996 68999999
Q ss_pred EEeeCCeEEEEcChhHHHHHHH
Q 044112 245 LLLSKGTVVHHGSLDLLEHRLR 266 (610)
Q Consensus 245 ~~L~~G~iv~~g~~~~~~~~~~ 266 (610)
++|++|++-.+|+.+|+...+.
T Consensus 542 lvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 542 LVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred eeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999887764
No 313
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.8e-38 Score=318.59 Aligned_cols=190 Identities=25% Similarity=0.327 Sum_probs=160.5
Q ss_pred ccccceeEEEe-----CceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCC
Q 044112 49 CILKNVNCEAR-----PGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLL 123 (610)
Q Consensus 49 ~iL~~vs~~i~-----~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~l 123 (610)
..++|++++++ +||+++|+||||||||||+++|+|+++|+ +|+|.++|+ .++|++|+....+.+
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~--~G~i~~~g~---------~i~~~~q~~~~~~~~ 76 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPD--EGDIEIELD---------TVSYKPQYIKADYEG 76 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CCeEEECCc---------eEEEecccccCCCCC
Confidence 36777777776 79999999999999999999999999876 999999985 489999998877789
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCC
Q 044112 124 TVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGL 203 (610)
Q Consensus 124 Tv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgL 203 (610)
||+|++.+...... . ....++++++.+||.+..++.+ ..|||||||||+||++|+.+|++++|||||++|
T Consensus 77 tv~e~l~~~~~~~~--~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~L 146 (246)
T cd03237 77 TVRDLLSSITKDFY--T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYL 146 (246)
T ss_pred CHHHHHHHHhhhcc--c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999976543211 1 1234678899999988887776 589999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE--EEcChhH
Q 044112 204 DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV--HHGSLDL 260 (610)
Q Consensus 204 D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv--~~g~~~~ 260 (610)
|+.++..+.+.|++++++.|+|||++||+++ .+..++|++++|+++..+ ..+++.+
T Consensus 147 D~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 147 DVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 9999999999999998666899999999997 478899999999765433 3445544
No 314
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-38 Score=367.16 Aligned_cols=217 Identities=30% Similarity=0.492 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.|+.+ +.. +||+|+|+++++|+-+||+|||||||||.+.+|-..++|+ +|+|.+|
T Consensus 987 ~I~~~~V~F~YPsR-------------P~~-~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~--~G~V~ID 1050 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR-------------PDV-PVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD--AGKVKID 1050 (1228)
T ss_pred EEEEeeeEeeCCCC-------------CCc-hhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC--CCeEEEC
Confidence 59999999999632 334 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-------cCCcccccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKE-------LGLEHVANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~-------lgL~~~~~~~vg~ 167 (610)
|++++. +.+|+++|.|.|+|.||.. |++||+.|+. .+ .+.++ +.++++. .+|.+-.||.||
T Consensus 1051 g~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~~--vs~~e----Ii~Aak~ANaH~FI~sLP~GyDT~vG- 1121 (1228)
T KOG0055|consen 1051 GVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-EE--VSEEE----IIEAAKLANAHNFISSLPQGYDTRVG- 1121 (1228)
T ss_pred CcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-CC--CCHHH----HHHHHHHhhhHHHHhcCcCcccCccC-
Confidence 999754 6789999999999999986 9999999982 11 23333 2333332 367788899997
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+++.+||||||||++||||+++||+||||||.||+||+++.+-+-+.|.+.. .|+|.|++.|.++ ..+.+|.|.|+
T Consensus 1122 erG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1122 ERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADVIAVL 1197 (1228)
T ss_pred cccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCEEEEE
Confidence 6788999999999999999999999999999999999999999999999874 4899999999997 46899999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|++++.|+.+++.+
T Consensus 1198 ~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1198 KNGKVVEQGTHDELLA 1213 (1228)
T ss_pred ECCEEEecccHHHHHh
Confidence 9999999999998875
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.6e-38 Score=353.60 Aligned_cols=208 Identities=26% Similarity=0.352 Sum_probs=176.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++|. +.+ .+|+|+||++++||+++|+|||||||||||++|+|+++|+ +|+|.+
T Consensus 5 ~~l~i~~l~~~y~---------------~~~-~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~--~G~i~~ 66 (556)
T PRK11819 5 YIYTMNRVSKVVP---------------PKK-QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF--EGEARP 66 (556)
T ss_pred EEEEEeeEEEEeC---------------CCC-eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEe
Confidence 4799999999992 134 7999999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH-hc------------CCCCH----------------------
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR-LR------------LHVGL---------------------- 141 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~-~~------------~~~~~---------------------- 141 (610)
++. ..+|||+|++.+++.+||.||+.++.. .+ .....
T Consensus 67 ~~~--------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (556)
T PRK11819 67 APG--------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADA 138 (556)
T ss_pred cCC--------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 752 458999999999999999999987532 00 00000
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 044112 142 NRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVK 221 (610)
Q Consensus 142 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~ 221 (610)
.+.+++++++++.+||.. .++++ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 139 ~~~~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--- 209 (556)
T PRK11819 139 WDLDSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--- 209 (556)
T ss_pred cchHHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---
Confidence 012456888999999964 56666 599999999999999999999999999999999999999999999876
Q ss_pred CCcEEEEEecCCcHHHHHhcceEEEeeCCeEE-EEcChhHH
Q 044112 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVV-HHGSLDLL 261 (610)
Q Consensus 222 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~ 261 (610)
+.|||++||+++ .+.+++|++++|++|+++ +.|+.++.
T Consensus 210 -~~tviiisHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 210 -PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred -CCeEEEEeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 249999999998 488899999999999986 88987764
No 316
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.8e-38 Score=389.25 Aligned_cols=215 Identities=24% Similarity=0.361 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|+. +.+ .+|+|+|+++++||.+||+||||||||||+++|.|+++|. +|+|.+|
T Consensus 1237 ~I~f~nVsf~Y~~--------------~~~-~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~--~G~I~ID 1299 (1622)
T PLN03130 1237 SIKFEDVVLRYRP--------------ELP-PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELE--RGRILID 1299 (1622)
T ss_pred cEEEEEEEEEeCC--------------CCC-ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCC--CceEEEC
Confidence 5999999999931 223 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-------HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~ 167 (610)
|.++.. .++|+++++||||+.+|.. |++|||.++. ..+ ++++.++++..++. +-.|+.+|
T Consensus 1300 G~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~----~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vg- 1369 (1622)
T PLN03130 1300 GCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN----EHN----DADLWESLERAHLKDVIRRNSLGLDAEVS- 1369 (1622)
T ss_pred CEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC----CCC----HHHHHHHHHHcCcHHHHHhCccccCcccc-
Confidence 999753 6788999999999999987 9999997642 112 34466666666654 34567775
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|||+++|+++. + ..||||++|
T Consensus 1370 e~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL~t-I-~~~DrIlVL 1445 (1622)
T PLN03130 1370 EAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNT-I-IDCDRILVL 1445 (1622)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCChHH-H-HhCCEEEEE
Confidence 4667899999999999999999999999999999999999999999999874 47999999999974 4 569999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|++++.|+++++.+
T Consensus 1446 d~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1446 DAGRVVEFDTPENLLS 1461 (1622)
T ss_pred ECCEEEEeCCHHHHHh
Confidence 9999999999998763
No 317
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-38 Score=351.03 Aligned_cols=214 Identities=22% Similarity=0.387 Sum_probs=178.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|+++.. + .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.+
T Consensus 249 ~~i~~~~l~~~~------------------~-~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~ 307 (491)
T PRK10982 249 VILEVRNLTSLR------------------Q-PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKS--AGTITL 307 (491)
T ss_pred cEEEEeCccccc------------------C-cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCC--ccEEEE
Confidence 468999988753 2 5899999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHH-----HHhcCC-CCHHHHHHHHHHHHHHcCCc-cccc
Q 044112 97 NEQPMNI----TQFRRISGYVTQDE---VLFPLLTVKETLMYS-----ARLRLH-VGLNRAKARVSELLKELGLE-HVAN 162 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~~---~l~~~lTv~E~l~~~-----~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~ 162 (610)
+|+++.. ...++.++|++|+. .+++.+|+.||..+. ... .+ ....+.+++++++++.+++. +..+
T Consensus 308 ~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 386 (491)
T PRK10982 308 HGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNK-VGLLDNSRMKSDTQWVIDSMRVKTPGHR 386 (491)
T ss_pred CCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhccc-ccccCcHHHHHHHHHHHHhcCccCCCcc
Confidence 9988743 12356699999985 478889888774322 111 01 12233456788999999995 4567
Q ss_pred ccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 163 VRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 163 ~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+.+ .+|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++|||++ ++.++||
T Consensus 387 ~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~~-~~~~~~d 459 (491)
T PRK10982 387 TQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMP-ELLGITD 459 (491)
T ss_pred ccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCChH-HHHhhCC
Confidence 666 59999999999999999999999999999999999999999999999975 5899999999998 5889999
Q ss_pred eEEEeeCCeEEEEcChh
Q 044112 243 QILLLSKGTVVHHGSLD 259 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~ 259 (610)
++++|++|+++..++.+
T Consensus 460 ~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 460 RILVMSNGLVAGIVDTK 476 (491)
T ss_pred EEEEEECCEEEEEEccc
Confidence 99999999999877654
No 318
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2.7e-38 Score=355.88 Aligned_cols=206 Identities=23% Similarity=0.358 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|++++|+ +++ .+|+|+|+++++||.+||+||||||||||+++|+|+++|+ +|+|.+|
T Consensus 322 ~i~~~~v~f~y~---------------~~~-~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~--~G~i~~~ 383 (547)
T PRK10522 322 TLELRNVTFAYQ---------------DNG-FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILLD 383 (547)
T ss_pred eEEEEEEEEEeC---------------CCC-eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEEC
Confidence 699999999993 223 6899999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
|+++.. ..+++.++||+||+.+|+. |++|| + + ...++.++++++.+++.+..+..-|...+..||
T Consensus 384 g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LS 451 (547)
T PRK10522 384 GKPVTAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K---PANPALVEKWLERLKMAHKLELEDGRISNLKLS 451 (547)
T ss_pred CEECCCCCHHHHhhheEEEecChhHHHH-hhccc---c-----C---chHHHHHHHHHHHcCCchhhhccccCCCCCCCC
Confidence 999753 4678899999999998875 88877 1 1 123456788899999876543211111246899
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
||||||++||||++.+|++++||||||+||+.++..+.+.|.+..++.++|+|+++|+++ ..+.+|++++|++|+++.
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e 529 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSE 529 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999998765445899999999985 468899999999999986
Q ss_pred E
Q 044112 255 H 255 (610)
Q Consensus 255 ~ 255 (610)
.
T Consensus 530 ~ 530 (547)
T PRK10522 530 L 530 (547)
T ss_pred e
Confidence 6
No 319
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.3e-38 Score=313.28 Aligned_cols=195 Identities=19% Similarity=0.215 Sum_probs=163.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE-ECCEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL-VNEQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~-~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
++|+|||+++++||+++|+||||||||||+|+|+|+.+|+ +|+|. ++|..+. +.+++.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--sG~i~~~~~~~~~----------~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD--EGDFIGLRGDALP----------LGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CCCEEEecCceec----------cccccccCCcCcHHH
Confidence 4799999999999999999999999999999999999876 99997 7775431 234567889999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSAS 207 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 207 (610)
|+.+....+. ...++. .+.+.+.++|++..++.+ +.||||||||++||++|+.+|++++|||||++||+.+
T Consensus 69 nl~~~~~~~~-~~~~~~---~~~~~~~~~l~~~~~~~~-----~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~ 139 (213)
T PRK15177 69 NARMMASLYG-LDGDEF---SHFCYQLTQLEQCYTDRV-----SEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNAT 139 (213)
T ss_pred HHHHHHHHcC-CCHHHH---HHHHHHHhChhHHhhchH-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHH
Confidence 9998766432 222222 233456678887777776 5899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHHHHH
Q 044112 208 ALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLRI 267 (610)
Q Consensus 208 ~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~~~~ 267 (610)
+..+.+.|.+..+ ++|+|++||+++ ++.+++|++++|++|++++.|+.++..+++..
T Consensus 140 ~~~~~~~l~~~~~--~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 140 QLRMQAALACQLQ--QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHhh--CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 9999998866543 468999999998 47889999999999999999999988766543
No 320
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.5e-38 Score=356.91 Aligned_cols=200 Identities=33% Similarity=0.549 Sum_probs=170.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|+. +++ .+|+|+|+++++||.++|+||||||||||+|+|+|+++|+ +|+|.+|
T Consensus 320 ~i~~~~v~f~y~~--------------~~~-~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~--~G~I~~~ 382 (529)
T TIGR02857 320 SLEFSGLSVAYPG--------------RRA-PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVN 382 (529)
T ss_pred eEEEEEEEEECCC--------------CCc-ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEC
Confidence 6999999999941 123 6999999999999999999999999999999999999987 9999999
Q ss_pred CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 044112 98 EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIGG 167 (610)
Q Consensus 98 g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~ 167 (610)
|.++. .+++++.++||+|++.+|+. |++||+.++.. ..+ +++++++++..++.+. .|+.+|
T Consensus 383 g~~i~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~---~~~----~~~i~~a~~~~~l~~~i~~lp~Gldt~v~- 453 (529)
T TIGR02857 383 GVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARP---DAS----DAEIRRALERAGLDEFVAALPQGLDTLIG- 453 (529)
T ss_pred CEehhhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCC---CCC----HHHHHHHHHHcCcHHHHHhCcccccchhc-
Confidence 99874 35678899999999999975 99999987531 111 3456677777776542 466775
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+++|++++||||||+||+.+.+.+.+.|+++. .++|+|+++|+++ ..+.+|++++|
T Consensus 454 e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~--~~~~~d~i~~l 529 (529)
T TIGR02857 454 EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRLA--LAERADRIVVL 529 (529)
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCHH--HHHhCCEEEeC
Confidence 4667899999999999999999999999999999999999999999999874 4799999999996 35789999875
No 321
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-38 Score=389.39 Aligned_cols=214 Identities=22% Similarity=0.350 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|+. +.+ .+|+|+|+++++||.+||+||||||||||+++|.|+++|+ +|+|.+|
T Consensus 1234 ~I~f~nVsf~Y~~--------------~~~-~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~--~G~I~Id 1296 (1495)
T PLN03232 1234 SIKFEDVHLRYRP--------------GLP-PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE--KGRIMID 1296 (1495)
T ss_pred cEEEEEEEEEECC--------------CCC-cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CceEEEC
Confidence 5999999999931 223 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------cccccccC
Q 044112 98 EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIGG 167 (610)
Q Consensus 98 g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~ 167 (610)
|.+++ ..++|++++|||||+.+|+. |++|||.+.. ..+ ++++.++++..++.+ -.|+.+|
T Consensus 1297 G~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~- 1366 (1495)
T PLN03232 1297 DCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS----EHN----DADLWEALERAHIKDVIDRNPFGLDAEVS- 1366 (1495)
T ss_pred CEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC----CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceec-
Confidence 99975 36788999999999999987 9999997542 112 345666777766643 3466775
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|+++. ...||+|++|
T Consensus 1367 e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl~t--i~~~DrIlVL 1442 (1495)
T PLN03232 1367 EGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRLNT--IIDCDKILVL 1442 (1495)
T ss_pred CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCHHH--HHhCCEEEEE
Confidence 4667899999999999999999999999999999999999999999999874 47999999999973 4569999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|++++.|+++++.
T Consensus 1443 ~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1443 SSGQVLEYDSPQELL 1457 (1495)
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999999875
No 322
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8e-38 Score=352.23 Aligned_cols=209 Identities=26% Similarity=0.339 Sum_probs=174.6
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++|. +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.+
T Consensus 3 ~~i~~~nls~~~~---------------~~~-~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~--~G~i~~ 64 (552)
T TIGR03719 3 YIYTMNRVSKVVP---------------PKK-EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF--NGEARP 64 (552)
T ss_pred EEEEEeeEEEecC---------------CCC-eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEe
Confidence 4799999999982 134 7999999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHh-c------------CCCCHHH--------------------
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARL-R------------LHVGLNR-------------------- 143 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~-~------------~~~~~~~-------------------- 143 (610)
++ +..+||++|++.+++.+||+||+.++... + ......+
T Consensus 65 ~~--------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (552)
T TIGR03719 65 AP--------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADA 136 (552)
T ss_pred cC--------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCc
Confidence 75 24699999999999999999999875321 0 0000010
Q ss_pred --HHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 044112 144 --AKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVK 221 (610)
Q Consensus 144 --~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~ 221 (610)
..++++++++.+|+.. .++++ ..|||||||||+||++|+.+|++|+|||||++||+.++..+.+.|+++
T Consensus 137 ~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--- 207 (552)
T TIGR03719 137 WDLDRKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--- 207 (552)
T ss_pred chhHHHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---
Confidence 1245677888888854 45555 699999999999999999999999999999999999999999999875
Q ss_pred CCcEEEEEecCCcHHHHHhcceEEEeeCCeEE-EEcChhHHH
Q 044112 222 QGKTIVLTIHQPGFRILELFDQILLLSKGTVV-HHGSLDLLE 262 (610)
Q Consensus 222 ~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~~ 262 (610)
+.|||++||+++ .+..+||++++|++|+++ +.|+.++..
T Consensus 208 -~~tvIiisHd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~ 247 (552)
T TIGR03719 208 -PGTVVAVTHDRY-FLDNVAGWILELDRGRGIPWEGNYSSWL 247 (552)
T ss_pred -CCeEEEEeCCHH-HHHhhcCeEEEEECCEEEEecCCHHHHH
Confidence 249999999998 488899999999999976 789887644
No 323
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-37 Score=320.12 Aligned_cols=203 Identities=26% Similarity=0.400 Sum_probs=164.6
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
....|+++|+++.. + .+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|
T Consensus 36 ~~~~l~i~nls~~~------------------~-~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~--~G~I 94 (282)
T cd03291 36 DDNNLFFSNLCLVG------------------A-PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS--EGKI 94 (282)
T ss_pred CCCeEEEEEEEEec------------------c-cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEE
Confidence 34468999998741 2 6899999999999999999999999999999999999876 9999
Q ss_pred EECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc-------cccccC
Q 044112 95 LVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA-------NVRIGG 167 (610)
Q Consensus 95 ~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~ 167 (610)
.++| .++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+.. ++.++
T Consensus 95 ~i~g----------~i~yv~q~~~l~~~-tv~enl~~~~~~----~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~- 154 (282)
T cd03291 95 KHSG----------RISFSSQFSWIMPG-TIKENIIFGVSY----DE----YRYKSVVKACQLEEDITKFPEKDNTVLG- 154 (282)
T ss_pred EECC----------EEEEEeCccccccc-CHHHHhhccccc----CH----HHHHHHHHHhCCHHHHHhccccccceec-
Confidence 9988 28999999988875 999999875321 11 1223344444543322 22221
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLL-KYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L-~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.+ ++++ .+.|||++||+++. + ..+|++++
T Consensus 155 ~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~-~-~~~d~i~~ 230 (282)
T cd03291 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILI 230 (282)
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCChHH-H-HhCCEEEE
Confidence 234699999999999999999999999999999999999999999865 5553 37899999999974 4 68999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+++++.
T Consensus 231 l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 231 LHEGSSYFYGTFSELQ 246 (282)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999988754
No 324
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=5.9e-38 Score=299.45 Aligned_cols=164 Identities=33% Similarity=0.527 Sum_probs=144.6
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++++. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+++++ +|+|.++|
T Consensus 1 i~~~~~~~~~~---------------~~~-~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~ 62 (166)
T cd03223 1 IELENLSLATP---------------DGR-VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPE 62 (166)
T ss_pred CEEEEEEEEcC---------------CCC-eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECC
Confidence 46899999882 223 6999999999999999999999999999999999999876 99999987
Q ss_pred EeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHh
Q 044112 99 QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEK 178 (610)
Q Consensus 99 ~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 178 (610)
. +.++|++|++.++ ..|++||+.+. . ++.||||||
T Consensus 63 ~--------~~i~~~~q~~~~~-~~tv~~nl~~~-------------------------------~-----~~~LS~G~~ 97 (166)
T cd03223 63 G--------EDLLFLPQRPYLP-LGTLREQLIYP-------------------------------W-----DDVLSGGEQ 97 (166)
T ss_pred C--------ceEEEECCCCccc-cccHHHHhhcc-------------------------------C-----CCCCCHHHH
Confidence 3 5689999998765 57999998652 1 258999999
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 179 RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 179 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ ..+.+|++++|++|.
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~~--~~~~~d~i~~l~~~~ 164 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRPS--LWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCChh--HHhhCCEEEEEcCCC
Confidence 9999999999999999999999999999999999999875 579999999986 357999999998753
No 325
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-38 Score=350.48 Aligned_cols=203 Identities=28% Similarity=0.360 Sum_probs=175.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.+
T Consensus 318 ~~l~~~~l~~~~----------------~~~-~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~~ 378 (530)
T PRK15064 318 NALEVENLTKGF----------------DNG-PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD--SGTVKW 378 (530)
T ss_pred ceEEEEeeEEee----------------CCc-eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEE
Confidence 479999999998 334 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCcc
Q 044112 97 NEQPMNITQFRRISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSRGI 173 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~L 173 (610)
+|+ +.+||++|++. +++.+||+|++.+... . ...+++++++++.+|+. +..++.+ .+|
T Consensus 379 ~~~--------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~---~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 439 (530)
T PRK15064 379 SEN--------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E---GDDEQAVRGTLGRLLFSQDDIKKSV-----KVL 439 (530)
T ss_pred CCc--------eEEEEEcccccccCCCCCcHHHHHHHhcc---C---CccHHHHHHHHHHcCCChhHhcCcc-----ccc
Confidence 873 45899999864 5667999999864211 1 11245688999999994 6677766 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||++ .+.++||++++|++|+++
T Consensus 440 SgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDRE-FVSSLATRIIEITPDGVV 514 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCHH-HHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999875 349999999998 488899999999999998
Q ss_pred -EEcChhHHH
Q 044112 254 -HHGSLDLLE 262 (610)
Q Consensus 254 -~~g~~~~~~ 262 (610)
+.|++++..
T Consensus 515 ~~~g~~~~~~ 524 (530)
T PRK15064 515 DFSGTYEEYL 524 (530)
T ss_pred EcCCCHHHHH
Confidence 889887653
No 326
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-37 Score=319.98 Aligned_cols=231 Identities=27% Similarity=0.440 Sum_probs=202.1
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC---Ccee
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR---RVSG 92 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~---~~~G 92 (610)
...|+++||++.+... .+.. .++++|||++++||.+||+|+||||||-..+.+.|+++.. ..+|
T Consensus 4 ~~lL~v~nLsV~f~~~------------~~~~-~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg 70 (534)
T COG4172 4 MPLLSIRNLSVAFHQE------------GGTV-EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG 70 (534)
T ss_pred CcceeeeccEEEEecC------------Ccce-EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc
Confidence 3468999999998421 1334 8999999999999999999999999999999999999753 4589
Q ss_pred EEEECCEeCC---hhc---cc-ceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccc
Q 044112 93 SVLVNEQPMN---ITQ---FR-RISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANV 163 (610)
Q Consensus 93 ~I~~~g~~~~---~~~---~~-~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 163 (610)
+|.++|+++- ..+ .| ..|++++|++. |.|-.|+.+.+.-..+++.+.+.++.++++.++|+.+|+.+-..+
T Consensus 71 ~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r 150 (534)
T COG4172 71 SILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR 150 (534)
T ss_pred eeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh
Confidence 9999999862 222 33 47999999984 788889999998888877666778888999999999999875544
Q ss_pred cccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 164 RIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 164 ~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
. +.+|++|||||||||.||+||+++|++|+.||||+.||...+.+|+++|+++.++.|.+++++|||++- +-+++||
T Consensus 151 l--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~i-Vr~~ADr 227 (534)
T COG4172 151 L--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGI-VRKFADR 227 (534)
T ss_pred h--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHH-HHHhhhh
Confidence 3 468899999999999999999999999999999999999999999999999999999999999999985 7889999
Q ss_pred EEEeeCCeEEEEcChhHHH
Q 044112 244 ILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 244 v~~L~~G~iv~~g~~~~~~ 262 (610)
|++|.+|++++.|+++++.
T Consensus 228 V~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 228 VYVMQHGEIVETGTTETLF 246 (534)
T ss_pred EEEEeccEEeecCcHHHHh
Confidence 9999999999999988764
No 327
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.5e-38 Score=307.00 Aligned_cols=217 Identities=33% Similarity=0.467 Sum_probs=188.1
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++|++.++ +++ +||+|+|++|++||-.+|+|||||||||||++++|..+|. +|.+.
T Consensus 29 ~~li~l~~v~v~r----------------~gk-~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps--sg~~~ 89 (257)
T COG1119 29 EPLIELKNVSVRR----------------NGK-KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVT 89 (257)
T ss_pred cceEEecceEEEE----------------CCE-eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCC--CCcee
Confidence 3569999999998 556 8999999999999999999999999999999999999886 99999
Q ss_pred ECCEeCCh----hcccceEEEEccC--CCCCCCCCHHHHHHHHHHhc---CC-CCHHHHHHHHHHHHHHcCCcccccccc
Q 044112 96 VNEQPMNI----TQFRRISGYVTQD--EVLFPLLTVKETLMYSARLR---LH-VGLNRAKARVSELLKELGLEHVANVRI 165 (610)
Q Consensus 96 ~~g~~~~~----~~~~~~~~yv~Q~--~~l~~~lTv~E~l~~~~~~~---~~-~~~~~~~~~v~~~l~~lgL~~~~~~~v 165 (610)
+.|+.... .++|+.||+|.-. ..+.+..+|+|-+.-+..-. .. ...++..+++..+++.+|+.+.+|++.
T Consensus 90 ~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~ 169 (257)
T COG1119 90 LLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF 169 (257)
T ss_pred eeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch
Confidence 99998643 5688999999754 34556778988887443211 11 234556788999999999999999998
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCcEEEEEecCCcHHHHHhcceE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVK-QGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~-~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
+ .||-||||||-|||||+.+|++||||||++|||...++.+.+.|.+++.. .+.++|++||.++ |+-..++++
T Consensus 170 ~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~ 243 (257)
T COG1119 170 G-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHR 243 (257)
T ss_pred h-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceE
Confidence 5 99999999999999999999999999999999999999999999998743 3689999999998 699999999
Q ss_pred EEeeCCeEEEEcC
Q 044112 245 LLLSKGTVVHHGS 257 (610)
Q Consensus 245 ~~L~~G~iv~~g~ 257 (610)
+++++|+++++|.
T Consensus 244 lll~~g~v~~~g~ 256 (257)
T COG1119 244 LLLKEGEVVAQGK 256 (257)
T ss_pred EEeeCCceeeccc
Confidence 9999999999874
No 328
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.4e-37 Score=350.45 Aligned_cols=211 Identities=23% Similarity=0.349 Sum_probs=174.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|++++|+.+ +..++ .+|+|+|+++++||.+||+||||||||||+++|+|+++|+ +|+|.+
T Consensus 336 ~~i~~~~v~f~y~~~-----------~~~~~-~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~--~G~i~~ 401 (555)
T TIGR01194 336 DSIELKDVHMNPKAP-----------EGSEG-FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ--EGEILL 401 (555)
T ss_pred ceEEEEEEEEEeCCC-----------CCCcC-ceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEE
Confidence 469999999999411 00123 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc-CCCCCc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG-GESSRG 172 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~ 172 (610)
||.++.. .++++.++||+||+.+|.. |++||.. + +..+++++++++.+++.+..+...+ -+....
T Consensus 402 ~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~---~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~ 470 (555)
T TIGR01194 402 DGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E---HASLDNAQQYLQRLEIADKVKIEDGGFSTTTA 470 (555)
T ss_pred CCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c---chhHHHHHHHHHHcCCchhhcccccccCCccc
Confidence 9998853 4677889999999998875 8888841 1 1234567889999999876544322 123468
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLK-YMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~-~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
||||||||++||||++.+|++++|||||++||+.+...+.+.+. ++. ..|+|+|+++|+++ ..+.+|++++|++|+
T Consensus 471 LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~-~~~~tiiiisH~~~--~~~~~d~i~~l~~G~ 547 (555)
T TIGR01194 471 LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLK-RQGKTIIIISHDDQ--YFELADQIIKLAAGC 547 (555)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHH--HHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999998664 443 35899999999986 467999999999999
Q ss_pred EEEE
Q 044112 252 VVHH 255 (610)
Q Consensus 252 iv~~ 255 (610)
++..
T Consensus 548 i~~~ 551 (555)
T TIGR01194 548 IVKD 551 (555)
T ss_pred EEEe
Confidence 9754
No 329
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.3e-37 Score=382.84 Aligned_cols=214 Identities=24% Similarity=0.358 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|+. +.. .+|+||||+|++||.+||+|++|||||||+++|.|++++. +|+|.+|
T Consensus 1308 ~I~f~nVsf~Y~~--------------~~~-~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~--~G~I~ID 1370 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE--------------GLP-LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC--GGEIRVN 1370 (1560)
T ss_pred eEEEEEEEEEeCC--------------CCC-ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEEC
Confidence 5999999999941 223 6999999999999999999999999999999999999886 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------ccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~ 167 (610)
|.++.. .++|+.++|||||+.+|+. |++|||.... ..+ ++++.++++..|+.+. .|+.+|
T Consensus 1371 G~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~----~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vg- 1440 (1560)
T PTZ00243 1371 GREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL----EAS----SAEVWAALELVGLRERVASESEGIDSRVL- 1440 (1560)
T ss_pred CEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCccc----CCC----HHHHHHHHHHCCChHHHhhCccccccccc-
Confidence 999753 6788999999999999987 9999996421 112 3557788888877543 477776
Q ss_pred CCCCccCHHHhhHHHHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHD-PAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~-p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+++ |+||+||||||+||+.+...+.+.|++.. .++|||+++|+++ ....||+|++
T Consensus 1441 e~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl~--ti~~~DrIlV 1516 (1560)
T PTZ00243 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRLH--TVAQYDKIIV 1516 (1560)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccHH--HHHhCCEEEE
Confidence 46678999999999999999996 89999999999999999999999999863 4799999999996 4678999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+++++.
T Consensus 1517 Ld~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1517 MDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999999875
No 330
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.6e-37 Score=382.58 Aligned_cols=216 Identities=21% Similarity=0.286 Sum_probs=185.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++||+++|+. +.+ .+|+|+|+++++||.+||+|+||||||||+++|.|++++. +|+|.+
T Consensus 1283 g~I~f~nVsf~Y~~--------------~~~-~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~--~G~I~I 1345 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE--------------DLD-LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA--EGEIII 1345 (1522)
T ss_pred CcEEEEEEEEEeCC--------------CCc-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCC--CCeEEE
Confidence 36999999999941 223 6999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||.++.. ..+|++++|||||+.+|+. |++|||.... ..+ ++.+.++++..++.+ -.|+.+|
T Consensus 1346 dG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~----~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~ 1416 (1522)
T TIGR00957 1346 DGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS----QYS----DEEVWWALELAHLKTFVSALPDKLDHECA 1416 (1522)
T ss_pred CCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc----CCC----HHHHHHHHHHcCcHHHHhhCccCCCceec
Confidence 9999853 6788999999999999987 9999996321 112 344667777777653 3577775
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+++|+||+||||||+||+.+...+.+.|++.. .++|||+++|+++. ...+|||++
T Consensus 1417 -e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl~t--i~~~DrIlV 1491 (1522)
T TIGR00957 1417 -EGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRLNT--IMDYTRVIV 1491 (1522)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH--HHhCCEEEE
Confidence 4567899999999999999999999999999999999999999999999864 47999999999973 567999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|++++.|+++++.+
T Consensus 1492 ld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1492 LDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998764
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.1e-37 Score=380.83 Aligned_cols=213 Identities=24% Similarity=0.431 Sum_probs=175.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|+. .+.+ .+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.++
T Consensus 382 ~I~~~nVsf~Y~~-------------~~~~-~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~--~G~I~i~ 445 (1466)
T PTZ00265 382 KIQFKNVRFHYDT-------------RKDV-EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT--EGDIIIN 445 (1466)
T ss_pred cEEEEEEEEEcCC-------------CCCC-ceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC--CCeEEEe
Confidence 6999999999941 1223 6999999999999999999999999999999999999887 9999994
Q ss_pred -CEeCC---hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC---------CC-------------------------
Q 044112 98 -EQPMN---ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL---------HV------------------------- 139 (610)
Q Consensus 98 -g~~~~---~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~---------~~------------------------- 139 (610)
|+++. ...+|+.+|||+|++.+|+. |++||+.++..... ..
T Consensus 446 ~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1466)
T PTZ00265 446 DSHNLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLND 524 (1466)
T ss_pred CCcchhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhh
Confidence 67763 34577889999999999985 99999998631000 00
Q ss_pred ----------------CHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEE
Q 044112 140 ----------------GLNRAKARVSELLKELGLEHV-------ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLI 196 (610)
Q Consensus 140 ----------------~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llll 196 (610)
.....++++.++++.+++.+. .||.+| +.+..||||||||++|||||+.+|+||+|
T Consensus 525 ~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg-~~g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 525 MSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred cccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 000123567788888877543 466675 45789999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 197 DEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 197 DEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
|||||+||+.++..+.+.|++++++.|+|+|+++|+++. + +.||++++|++|
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999999999999999999865458999999999973 4 799999999986
No 332
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.9e-37 Score=343.88 Aligned_cols=206 Identities=24% Similarity=0.354 Sum_probs=173.3
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++||++.| +.+ .+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.
T Consensus 322 ~~~l~~~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~--~G~i~ 382 (556)
T PRK11819 322 DKVIEAENLSKSF----------------GDR-LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPD--SGTIK 382 (556)
T ss_pred CeEEEEEeEEEEE----------------CCe-eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEE
Confidence 3579999999998 344 7999999999999999999999999999999999999876 99999
Q ss_pred ECCEeCChhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcc
Q 044112 96 VNEQPMNITQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGI 173 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~L 173 (610)
+++ + ..+||++|+. .+++.+||+||+.+....... .. .+.++.++++.+|+.+ ..++.+ .+|
T Consensus 383 ~~~-~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~-~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~L 446 (556)
T PRK11819 383 IGE-T-------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV-GN--REIPSRAYVGRFNFKGGDQQKKV-----GVL 446 (556)
T ss_pred ECC-c-------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc-cc--cHHHHHHHHHhCCCChhHhcCch-----hhC
Confidence 954 2 1489999996 788899999999987532211 11 1223557899999964 567666 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC-CeE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK-GTV 252 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~i 252 (610)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++|||++ .+.++||++++|++ |++
T Consensus 447 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 447 SGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDRW-FLDRIATHILAFEGDSQV 521 (556)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCHH-HHHHhCCEEEEEECCCeE
Confidence 9999999999999999999999999999999999999999999862 4 8999999998 48899999999986 777
Q ss_pred E-EEcChhHH
Q 044112 253 V-HHGSLDLL 261 (610)
Q Consensus 253 v-~~g~~~~~ 261 (610)
. +.|+.++.
T Consensus 522 ~~~~g~~~~~ 531 (556)
T PRK11819 522 EWFEGNFQEY 531 (556)
T ss_pred EEecCCHHHH
Confidence 6 57766543
No 333
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.5e-37 Score=345.64 Aligned_cols=200 Identities=29% Similarity=0.352 Sum_probs=174.5
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++|+++.+ +.. .|+++|+++++||+++|+||||||||||+++|+|+++|+ +|+|.
T Consensus 338 ~~~l~~~~ls~~~----------------~~~--~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~ 397 (590)
T PRK13409 338 ETLVEYPDLTKKL----------------GDF--SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPD--EGEVD 397 (590)
T ss_pred ceEEEEcceEEEE----------------CCE--EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEE
Confidence 3569999999988 223 489999999999999999999999999999999999877 99998
Q ss_pred ECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 96 VNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
++ ..++|++|+..+.+.+||+|++.+..... . ....++++++.+||.+..++.+ ..|||
T Consensus 398 ~~----------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~---~---~~~~~~~~L~~l~l~~~~~~~~-----~~LSG 456 (590)
T PRK13409 398 PE----------LKISYKPQYIKPDYDGTVEDLLRSITDDL---G---SSYYKSEIIKPLQLERLLDKNV-----KDLSG 456 (590)
T ss_pred Ee----------eeEEEecccccCCCCCcHHHHHHHHhhhc---C---hHHHHHHHHHHCCCHHHHhCCc-----ccCCH
Confidence 85 14899999988888999999998753211 1 1235688999999998888777 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++|||+. .+..++|++++|+ |++...
T Consensus 457 Ge~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~ 534 (590)
T PRK13409 457 GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKH 534 (590)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceee
Confidence 99999999999999999999999999999999999999999998766899999999998 4788999999996 477777
Q ss_pred cCh
Q 044112 256 GSL 258 (610)
Q Consensus 256 g~~ 258 (610)
|..
T Consensus 535 g~~ 537 (590)
T PRK13409 535 GHA 537 (590)
T ss_pred eec
Confidence 663
No 334
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-37 Score=305.21 Aligned_cols=195 Identities=26% Similarity=0.395 Sum_probs=169.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++++||++.+..+.. .++ .....+++||||++++||+++|+|+||||||||-|+|.|+.+|+ +|+|.+
T Consensus 3 ~ll~v~~l~k~f~~~~~-------~~~-~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt--~G~i~f 72 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG-------FGK-KRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPT--SGEILF 72 (268)
T ss_pred ceEEEeccEEEEecccc-------cCc-ccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCC--CceEEE
Confidence 46899999999964311 011 11127999999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCH
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISG 175 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 175 (610)
+|+++.... .++..+++.++|+.+||.+ .+++ ++++|||
T Consensus 73 ~g~~i~~~~-----------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPhelSG 112 (268)
T COG4608 73 EGKDITKLS-----------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPHELSG 112 (268)
T ss_pred cCcchhhcc-----------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCcccCc
Confidence 999864221 2445678999999999865 4444 4589999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
|||||+.|||||+.+|+++++|||+|.||...+.+++++|+++.++.|.|.+.++||.+. +..++||+.+|..|+++..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~v-v~~isdri~VMy~G~iVE~ 191 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSV-VRYISDRIAVMYLGKIVEI 191 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHh-hhhhcccEEEEecCceeEe
Confidence 999999999999999999999999999999999999999999999999999999999984 8889999999999999999
Q ss_pred cChhHHH
Q 044112 256 GSLDLLE 262 (610)
Q Consensus 256 g~~~~~~ 262 (610)
|+.+++.
T Consensus 192 g~~~~~~ 198 (268)
T COG4608 192 GPTEEVF 198 (268)
T ss_pred cCHHHHh
Confidence 9998864
No 335
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=324.93 Aligned_cols=223 Identities=29% Similarity=0.479 Sum_probs=189.9
Q ss_pred CCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeE
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGS 93 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~ 93 (610)
.++-.++++|+++.|+ .++ ++|+||||++.||+.+|++|||||||||++++|-...+.. +|.
T Consensus 533 ~~~G~i~fsnvtF~Y~---------------p~k-~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~--sGs 594 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYD---------------PGK-PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN--SGS 594 (790)
T ss_pred ccCCeEEEEEeEEecC---------------CCC-ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc--Cce
Confidence 3455799999999994 344 8999999999999999999999999999999999998766 999
Q ss_pred EEECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHH--HHHH-HHcCCcccccccccC
Q 044112 94 VLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARV--SELL-KELGLEHVANVRIGG 167 (610)
Q Consensus 94 I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v--~~~l-~~lgL~~~~~~~vg~ 167 (610)
|.+||+++.. ..+|+.||.||||..+|.+ |+..|++|+. ...+.++..+.+ .++- +.++..+-.+++||
T Consensus 595 I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak---~~AsneevyaAAkAA~IHdrIl~fPegY~t~VG- 669 (790)
T KOG0056|consen 595 ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK---PSASNEEVYAAAKAAQIHDRILQFPEGYNTRVG- 669 (790)
T ss_pred EEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC---CCCChHHHHHHHHHhhHHHHHhcCchhhhhhhh-
Confidence 9999999853 5789999999999999986 9999998862 222334332222 1121 33677888899997
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+++-.|||||||||+|||+++.+|.+++|||.||+||..+.+.|...|.+++. ++|-|++.|.++. .-.+|.++++
T Consensus 670 ERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLST--ivnAD~ILvi 745 (790)
T KOG0056|consen 670 ERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLST--IVNADLILVI 745 (790)
T ss_pred hcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeehh--eecccEEEEE
Confidence 56678999999999999999999999999999999999999999999999983 7899999999984 4579999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|+|++.|..+++..
T Consensus 746 ~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 746 SNGRIVERGRHEELLK 761 (790)
T ss_pred eCCeEeecCcHHHHHh
Confidence 9999999999988754
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.6e-36 Score=341.73 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=172.2
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++|+++++ +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.
T Consensus 320 ~~~l~~~~l~~~~----------------~~~-~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~G~i~ 380 (552)
T TIGR03719 320 DKVIEAENLSKGF----------------GDK-LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD--SGTIK 380 (552)
T ss_pred CeEEEEeeEEEEE----------------CCe-eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEE
Confidence 3469999999998 334 7999999999999999999999999999999999999876 99999
Q ss_pred ECCEeCChhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCcc
Q 044112 96 VNEQPMNITQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGI 173 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~L 173 (610)
+++. ..+||++|+. .+++.+||.|++.++..... ... .+.+++++++.+|+.+ ..++.+ ..|
T Consensus 381 ~~~~--------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~L 444 (552)
T TIGR03719 381 IGET--------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ-LGK--REVPSRAYVGRFNFKGSDQQKKV-----GQL 444 (552)
T ss_pred ECCc--------eEEEEEeCCccccCCCCcHHHHHHhhccccc-cCc--chHHHHHHHHhCCCChhHhcCch-----hhC
Confidence 8542 1589999996 47888999999998753221 111 1234567899999964 467666 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC-CeE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK-GTV 252 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~-G~i 252 (610)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. + |||++|||++ .+.++||++++|++ |++
T Consensus 445 SgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~~-~~~~~~d~i~~l~~~~~~ 519 (552)
T TIGR03719 445 SGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDRW-FLDRIATHILAFEGDSHV 519 (552)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCHH-HHHHhCCEEEEEECCCeE
Confidence 9999999999999999999999999999999999999999999862 4 8999999997 48889999999987 577
Q ss_pred E-EEcChhH
Q 044112 253 V-HHGSLDL 260 (610)
Q Consensus 253 v-~~g~~~~ 260 (610)
+ +.|+.++
T Consensus 520 ~~~~g~~~~ 528 (552)
T TIGR03719 520 EWFEGNYSE 528 (552)
T ss_pred EEeCCCHHH
Confidence 6 5676654
No 337
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.2e-37 Score=293.16 Aligned_cols=217 Identities=28% Similarity=0.413 Sum_probs=180.6
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
++.+|+++.+.. .....+ ++|+++|+++..|+++-|+|.||||||||+|+|+|.+.++ +|+|.++|
T Consensus 2 i~~~~~~~~f~~-----------g~~~ek-~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t--~G~I~Idg 67 (263)
T COG1101 2 ISLSNATKTFFK-----------GTPLEK-RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT--SGQILIDG 67 (263)
T ss_pred cccccceeeecC-----------CChhHH-HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccC--CceEEECc
Confidence 556777776631 122344 8999999999999999999999999999999999999987 99999999
Q ss_pred EeCChh---cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCC---CCH---HHHHHHHHHHHHHc--CCcccccccc
Q 044112 99 QPMNIT---QFRRISGYVTQDEV--LFPLLTVKETLMYSARLRLH---VGL---NRAKARVSELLKEL--GLEHVANVRI 165 (610)
Q Consensus 99 ~~~~~~---~~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~---~~~---~~~~~~v~~~l~~l--gL~~~~~~~v 165 (610)
.+++.. +....++-|+||+. ..|.||++||+.++.. |.. .+. ...++.-.+-++.+ ||++..++++
T Consensus 68 ~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~-Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~i 146 (263)
T COG1101 68 VDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAES-RGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRI 146 (263)
T ss_pred eecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHh-cCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChh
Confidence 998752 23345788999984 7999999999999764 311 111 22233334445554 6688899988
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
| -|||||||-+++++|-++.|+||+|||-|++|||.++..+|+.-.++-++.+.|.+++||.++. ..++-+|.+
T Consensus 147 g-----lLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~-Al~yG~RlI 220 (263)
T COG1101 147 G-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED-ALDYGNRLI 220 (263)
T ss_pred h-----hccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHH-HHhhCCeEE
Confidence 6 8999999999999999999999999999999999999999999999988889999999999985 789999999
Q ss_pred EeeCCeEEEEc
Q 044112 246 LLSKGTVVHHG 256 (610)
Q Consensus 246 ~L~~G~iv~~g 256 (610)
+|++|+|+.+-
T Consensus 221 mLh~G~IvlDv 231 (263)
T COG1101 221 MLHSGKIVLDV 231 (263)
T ss_pred EEeCCeEEEEc
Confidence 99999999763
No 338
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.2e-36 Score=374.01 Aligned_cols=214 Identities=21% Similarity=0.343 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++||+++|+. +.+ .+|+|+|++|++||.+||+|+||||||||+++|.|+++ . +|+|.+
T Consensus 1216 g~I~f~nVs~~Y~~--------------~~~-~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~--~G~I~I 1277 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE--------------AGR-AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-T--EGEIQI 1277 (1490)
T ss_pred CeEEEEEEEEEeCC--------------CCc-ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C--CcEEEE
Confidence 36999999999941 224 79999999999999999999999999999999999985 3 899999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||.+++. ..+|+.++|||||+.+|+. |+||||.... +..++++.++++..+|.+ -.|+.+|
T Consensus 1278 dG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~--------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1278 DGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE--------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred CCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc--------CCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 9999853 5688999999999999987 9999995421 112456778888888753 3567775
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++|||||+++|+||+||||||+||+.+...+.+.|++.. .++|||+++|.++ ....+|+|++
T Consensus 1349 -e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl~--ti~~~DrIlv 1423 (1490)
T TIGR01271 1349 -DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRVE--ALLECQQFLV 1423 (1490)
T ss_pred -cCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH--HHHhCCEEEE
Confidence 4567899999999999999999999999999999999999999999999864 4799999999996 3566999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|+++..|+++++.
T Consensus 1424 L~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1424 IEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999999875
No 339
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-36 Score=309.75 Aligned_cols=189 Identities=29% Similarity=0.384 Sum_probs=159.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE-----------ECCEeCCh--hc-cc--ceEEE
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL-----------VNEQPMNI--TQ-FR--RISGY 112 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~-----------~~g~~~~~--~~-~~--~~~~y 112 (610)
.+|+|+| .+++||+++|+||||||||||||+|+|+++|+ +|+|. ++|+++.. .. .+ ..++|
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~--~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 91 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPN--LGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIV 91 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCC--CceEeeccccchhhhhccCchhhhhhHHhhhcccceee
Confidence 5899999 59999999999999999999999999999887 99996 78887642 11 11 24789
Q ss_pred EccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCC
Q 044112 113 VTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPA 192 (610)
Q Consensus 113 v~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ 192 (610)
++|+..+++. ++.+++.+... ....++.+.++++.+||.+..++.+ ..||||||||++||++|+.+|+
T Consensus 92 ~~~~~~~~~~-~~~~~i~~~l~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~ 159 (255)
T cd03236 92 KPQYVDLIPK-AVKGKVGELLK------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDAD 159 (255)
T ss_pred ecchhccCch-HHHHHHHHHhc------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCCC
Confidence 9999888884 88888876431 1233467889999999988777665 5999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 193 VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 193 llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
++++||||+|||+.++..+.+.|+++++ .|+|||+++|+++ .+.++||++++|+ |++.+.
T Consensus 160 illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~ 219 (255)
T cd03236 160 FYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAY 219 (255)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcc
Confidence 9999999999999999999999999975 4899999999997 4777999999995 556543
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=342.53 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=173.8
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++||++.| +.+ .+|+|+|++|++||++||+||||||||||||+|+|+.+|+ +|+|.
T Consensus 310 ~~~l~~~~l~~~y----------------~~~-~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i~ 370 (638)
T PRK10636 310 NPLLKMEKVSAGY----------------GDR-IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPV--SGEIG 370 (638)
T ss_pred CceEEEEeeEEEe----------------CCe-eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEE
Confidence 4569999999998 344 7999999999999999999999999999999999999876 99999
Q ss_pred ECCEeCChhcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCc
Q 044112 96 VNEQPMNITQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSRG 172 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 172 (610)
+++. ..+||++|+. .+.+..|+.+++.- .. ....++++.++|+.+++. +..++++ +.
T Consensus 371 ~~~~--------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~ 430 (638)
T PRK10636 371 LAKG--------IKLGYFAQHQLEFLRADESPLQHLAR---LA----PQELEQKLRDYLGGFGFQGDKVTEET-----RR 430 (638)
T ss_pred ECCC--------EEEEEecCcchhhCCccchHHHHHHH---hC----chhhHHHHHHHHHHcCCChhHhcCch-----hh
Confidence 9742 2589999974 35566788887632 11 122345688999999996 4677776 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+.. +.++||++++|++|++
T Consensus 431 LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~~~-~~~~~d~i~~l~~G~i 505 (638)
T PRK10636 431 FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDRHL-LRSTTDDLYLVHDGKV 505 (638)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCHHH-HHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999886 25 99999999974 8899999999999999
Q ss_pred E-EEcChhHHHH
Q 044112 253 V-HHGSLDLLEH 263 (610)
Q Consensus 253 v-~~g~~~~~~~ 263 (610)
+ +.|+.++..+
T Consensus 506 ~~~~g~~~~~~~ 517 (638)
T PRK10636 506 EPFDGDLEDYQQ 517 (638)
T ss_pred EEcCCCHHHHHH
Confidence 7 8899887643
No 341
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7e-36 Score=341.26 Aligned_cols=207 Identities=23% Similarity=0.372 Sum_probs=174.3
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
....|+++||++.| +.+ .+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|
T Consensus 316 ~~~~l~~~~l~~~~----------------~~~-~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~--~G~i 376 (635)
T PRK11147 316 GKIVFEMENVNYQI----------------DGK-QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD--SGRI 376 (635)
T ss_pred CCceEEEeeeEEEE----------------CCe-EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEE
Confidence 34579999999998 344 7999999999999999999999999999999999999876 9999
Q ss_pred EECCEeCChhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCc
Q 044112 95 LVNEQPMNITQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSRG 172 (610)
Q Consensus 95 ~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 172 (610)
.+ |.++ .+||++|+. .+++.+||.|++.+.... ... .....++.++++.+++. +..++++ +.
T Consensus 377 ~~-~~~~-------~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~~~--~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 440 (635)
T PRK11147 377 HC-GTKL-------EVAYFDQHRAELDPEKTVMDNLAEGKQE-VMV--NGRPRHVLGYLQDFLFHPKRAMTPV-----KA 440 (635)
T ss_pred EE-CCCc-------EEEEEeCcccccCCCCCHHHHHHhhccc-ccc--cchHHHHHHHHHhcCCCHHHHhChh-----hh
Confidence 98 5432 489999985 588999999999875421 110 11234678899999996 4567776 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee-CCe
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS-KGT 251 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~-~G~ 251 (610)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+..+||++++++ +|+
T Consensus 441 LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~ 515 (635)
T PRK11147 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDRQ-FVDNTVTECWIFEGNGK 515 (635)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCHH-HHHHhcCEEEEEeCCCe
Confidence 9999999999999999999999999999999999999999999865 349999999997 4788999999998 798
Q ss_pred EE-EEcChhHH
Q 044112 252 VV-HHGSLDLL 261 (610)
Q Consensus 252 iv-~~g~~~~~ 261 (610)
+. |.|+.++.
T Consensus 516 i~~~~g~y~~y 526 (635)
T PRK11147 516 IGRYVGGYHDA 526 (635)
T ss_pred EEEccCCHHHH
Confidence 76 56777654
No 342
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3e-35 Score=287.65 Aligned_cols=231 Identities=23% Similarity=0.285 Sum_probs=195.8
Q ss_pred eeEEEEeEEEEEeccccccc----c----cccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC
Q 044112 17 YRIRTKKLTYRSFRGVDEFN----W----FCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR 88 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~----~----~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~ 88 (610)
..|+++||++.++....... . ..+..+.... .+|+||||++++||.+||+|+||||||||||+|+|.++|+
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt 80 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEF-WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT 80 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceE-EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCC
Confidence 46889999999976542111 1 1122222333 7999999999999999999999999999999999999987
Q ss_pred CceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 044112 89 RVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 89 ~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 168 (610)
+|+|.++|+-...-. =.-.+-|.+|.+||+.+-+.+ ++.+.++.+++++++++.-+|.+..|.+|
T Consensus 81 --~G~v~v~G~v~~li~---------lg~Gf~pelTGreNi~l~~~~-~G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 --SGKVKVTGKVAPLIE---------LGAGFDPELTGRENIYLRGLI-LGLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred --CceEEEcceEehhhh---------cccCCCcccchHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 999999997432111 112355779999999998765 34578889999999999999999999998
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+.+|-||+-|++.|.+...+|++|++||-.+--|+.-+++-.+.++++.+ +++|||+++||++ .+.++||++++|+
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~-~~~tiv~VSHd~~-~I~~~Cd~~i~l~ 221 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE-KNKTIVLVSHDLG-AIKQYCDRAIWLE 221 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHH-HHHHhcCeeEEEe
Confidence 79999999999999999999999999999999999999999999999965 4799999999998 4999999999999
Q ss_pred CCeEEEEcChhHHHHHHHH
Q 044112 249 KGTVVHHGSLDLLEHRLRI 267 (610)
Q Consensus 249 ~G~iv~~g~~~~~~~~~~~ 267 (610)
+|++...|+++++.+++..
T Consensus 222 ~G~i~~~G~~~~vi~~Y~~ 240 (249)
T COG1134 222 HGQIRMEGSPEEVIPAYEE 240 (249)
T ss_pred CCEEEEcCCHHHHHHHHHH
Confidence 9999999999998877654
No 343
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=5.2e-36 Score=351.95 Aligned_cols=224 Identities=29% Similarity=0.456 Sum_probs=201.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..+..+|+++.+. +.+ .+++++|+.+++||+.|++|+|||||||++|+|.|..+++ +|++.+
T Consensus 563 ~~~~~~~L~k~y~---------------~~~-~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t--~G~a~i 624 (885)
T KOG0059|consen 563 SALVLNNLSKVYG---------------GKD-GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPT--SGEALI 624 (885)
T ss_pred ceEEEcceeeeec---------------chh-hhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCC--cceEEE
Confidence 4567788888772 222 2899999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 97 NEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
+|+++.. .+.++.+||+||+|.+++.+|.+|++.+.++++. .+.++.++.++.+++.+||.+.+|+.++ .
T Consensus 625 ~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG-~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ 698 (885)
T KOG0059|consen 625 KGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG-LPRSDIGSAIEKLLRLVGLGPYANKQVR-----T 698 (885)
T ss_pred ecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC-CChhHHHHHHHHHHHHcCChhhhccchh-----h
Confidence 9998753 2377889999999999999999999999999874 3445667779999999999999999984 8
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
+|||+|||+++|.||+.+|++++|||||+|+||.+++.++++++++.+ +|+.||+|||..+ |...+|||+.+|.+|++
T Consensus 699 ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 699 YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSME-EAEALCTRTAIMVIGQL 776 (885)
T ss_pred CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCHH-HHHHHhhhhheeecCee
Confidence 999999999999999999999999999999999999999999999975 5779999999998 68999999999999999
Q ss_pred EEEcChhHHHHHHH
Q 044112 253 VHHGSLDLLEHRLR 266 (610)
Q Consensus 253 v~~g~~~~~~~~~~ 266 (610)
...|+++++...|.
T Consensus 777 ~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 777 RCIGSPQELKSRYG 790 (885)
T ss_pred EEecChHHHHhhcC
Confidence 99999999987765
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.4e-35 Score=276.46 Aligned_cols=144 Identities=33% Similarity=0.497 Sum_probs=132.2
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++|+++.+ +.. .+++++|+++++||+++|+||||||||||+++|+|+.++. +|+|.++|
T Consensus 1 l~~~~l~~~~----------------~~~-~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~--~G~i~~~~ 61 (144)
T cd03221 1 IELENLSKTY----------------GGK-LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD--EGIVTWGS 61 (144)
T ss_pred CEEEEEEEEE----------------CCc-eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--ceEEEECC
Confidence 4688999988 334 6999999999999999999999999999999999999876 99999998
Q ss_pred EeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHh
Q 044112 99 QPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEK 178 (610)
Q Consensus 99 ~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer 178 (610)
+ +.++|++| ||+||+
T Consensus 62 ~--------~~i~~~~~---------------------------------------------------------lS~G~~ 76 (144)
T cd03221 62 T--------VKIGYFEQ---------------------------------------------------------LSGGEK 76 (144)
T ss_pred e--------EEEEEEcc---------------------------------------------------------CCHHHH
Confidence 4 46899998 999999
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 179 RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 179 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
||++|||+|+.+|+++++||||+|||+.++..+.+.|+++ ++||++++|+++ ++.+++|++++|++|+
T Consensus 77 ~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 77 MRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999875 369999999997 4778999999999985
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.7e-35 Score=335.69 Aligned_cols=207 Identities=23% Similarity=0.346 Sum_probs=169.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++|+++.|. +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|. +|+|.+
T Consensus 507 ~~L~~~~ls~~y~---------------~~~-~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~--~G~I~~ 568 (718)
T PLN03073 507 PIISFSDASFGYP---------------GGP-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPS--SGTVFR 568 (718)
T ss_pred ceEEEEeeEEEeC---------------CCC-eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CceEEE
Confidence 5799999999982 223 6999999999999999999999999999999999999876 999998
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCH
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISG 175 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSg 175 (610)
++. ..+||++|+. .+.+++.++..+......+. ..++++.++++.+|+.+ ..++++ ..|||
T Consensus 569 ~~~--------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~~~~~~-----~~LSg 630 (718)
T PLN03073 569 SAK--------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNLALQPM-----YTLSG 630 (718)
T ss_pred CCc--------eeEEEEeccc--cccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHHhcCCc-----cccCH
Confidence 652 3589999985 34556666644322111111 11356788999999974 566665 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE-E
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV-H 254 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~ 254 (610)
||||||+||++|+.+|++|+|||||+|||+.++..+++.|++. .| |||++|||+.. +..+||++++|++|+++ +
T Consensus 631 GqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~~~-i~~~~drv~~l~~G~i~~~ 705 (718)
T PLN03073 631 GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDEHL-ISGSVDELWVVSEGKVTPF 705 (718)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCHHH-HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998888754 24 99999999984 88899999999999998 7
Q ss_pred EcChhHHHHH
Q 044112 255 HGSLDLLEHR 264 (610)
Q Consensus 255 ~g~~~~~~~~ 264 (610)
.|+.++..++
T Consensus 706 ~g~~~~~~~~ 715 (718)
T PLN03073 706 HGTFHDYKKT 715 (718)
T ss_pred CCCHHHHHHH
Confidence 8887765444
No 346
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1e-35 Score=340.59 Aligned_cols=199 Identities=20% Similarity=0.330 Sum_probs=164.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++|+++.++ +++ .+|+|+|+++++||.++|+||||||||||+++|+|+.++. +|+|.++
T Consensus 451 ~i~~~nv~~~~~---------------~~~-~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~--~G~i~~~ 512 (659)
T TIGR00954 451 GIKFENIPLVTP---------------NGD-VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVY--GGRLTKP 512 (659)
T ss_pred eEEEEeeEEECC---------------CCC-eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCeEeec
Confidence 599999999872 233 6999999999999999999999999999999999999876 8999876
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc----CCCCCcc
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG----GESSRGI 173 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~L 173 (610)
+ ++.++||+|++.+++. |++||+.++.........+..+++++++++.+|+++..+++.| .+.+..|
T Consensus 513 ~--------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~L 583 (659)
T TIGR00954 513 A--------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVL 583 (659)
T ss_pred C--------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCC
Confidence 4 4579999999998887 9999998864221000011123567889999999876655432 1235689
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|||||||++|||+|+++|++++|||||+|||+.+...+.+.+++ .|+|+|+++|+++ ..+.+|++++|++
T Consensus 584 SgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~~--~~~~~d~il~l~~ 653 (659)
T TIGR00954 584 SGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRKS--LWKYHEYLLYMDG 653 (659)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCchH--HHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999998865 3789999999997 3588999999974
No 347
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.6e-35 Score=284.58 Aligned_cols=147 Identities=29% Similarity=0.369 Sum_probs=130.3
Q ss_pred ccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCC
Q 044112 45 PPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLT 124 (610)
Q Consensus 45 ~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lT 124 (610)
+.+ .+++++ +++++||+++|+||||||||||+|+|+|+++|+ +|+|.++|++ ++|++|+..
T Consensus 11 ~~~-~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~---------i~~~~q~~~------ 71 (177)
T cd03222 11 GVF-FLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN--GDNDEWDGIT---------PVYKPQYID------ 71 (177)
T ss_pred CCE-EEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--CcEEEECCEE---------EEEEcccCC------
Confidence 344 688884 899999999999999999999999999999887 9999999863 688888532
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044112 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLD 204 (610)
Q Consensus 125 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD 204 (610)
||||||||++||++|+.+|++++|||||+|||
T Consensus 72 ------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 72 ------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEE--cChh
Q 044112 205 SASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHH--GSLD 259 (610)
Q Consensus 205 ~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~--g~~~ 259 (610)
+.++..+.+.|++++++.++|||++||+++ .+.+++|++++|+++..++. |+|.
T Consensus 104 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 104 IEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999999987554489999999997 47789999999998876655 6554
No 348
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=335.79 Aligned_cols=206 Identities=24% Similarity=0.371 Sum_probs=166.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+||+|++||++||+||||||||||||+|+|..+|+ +|+|.++
T Consensus 1 ~i~i~nls~~~----------------g~~-~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd--~G~I~~~ 61 (638)
T PRK10636 1 MIVFSSLQIRR----------------GVR-VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISAD--GGSYTFP 61 (638)
T ss_pred CEEEEEEEEEe----------------CCc-eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEec
Confidence 47899999999 445 7999999999999999999999999999999999998877 9999998
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHH-----------------------HhcC--C-CCHHHHHHHHHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSA-----------------------RLRL--H-VGLNRAKARVSEL 151 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~-----------------------~~~~--~-~~~~~~~~~v~~~ 151 (610)
|.. .++|++|+.... ..|+.+.+.-.. .+.. . ....+.+++++++
T Consensus 62 ~~~--------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (638)
T PRK10636 62 GNW--------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL 132 (638)
T ss_pred CCC--------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 742 378888864333 245555443110 0000 0 0011234578899
Q ss_pred HHHcCCc-ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEe
Q 044112 152 LKELGLE-HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTI 230 (610)
Q Consensus 152 l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~ 230 (610)
++.+|+. +..++++ ..|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|
T Consensus 133 L~~lgl~~~~~~~~~-----~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivs 203 (638)
T PRK10636 133 LHGLGFSNEQLERPV-----SDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILIS 203 (638)
T ss_pred HHhCCCCchhhcCch-----hhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEe
Confidence 9999997 5677777 589999999999999999999999999999999999999999999764 46999999
Q ss_pred cCCcHHHHHhcceEEEeeCCeEE-EEcChhHH
Q 044112 231 HQPGFRILELFDQILLLSKGTVV-HHGSLDLL 261 (610)
Q Consensus 231 H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~ 261 (610)
||... +.++||++++|++|+++ |.|+.+..
T Consensus 204 Hd~~~-l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 204 HDRDF-LDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred CCHHH-HHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 99984 78899999999999986 67877653
No 349
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-35 Score=274.42 Aligned_cols=229 Identities=27% Similarity=0.428 Sum_probs=196.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++++..... + ++ +..- .+++.|||++++|+.+||+|.||||||||.|+|+|..+|+ +|+|.+|
T Consensus 4 LLeV~nLsKtF~~~~~----l--f~-r~~~-~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PT--sG~il~n 73 (267)
T COG4167 4 LLEVRNLSKTFRYRTG----L--FR-RQTV-EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGEILIN 73 (267)
T ss_pred hhhhhhhhhhhhhhhh----h--hh-hhhh-hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCC--CceEEEC
Confidence 4788999988742211 0 11 1122 5899999999999999999999999999999999999987 9999999
Q ss_pred CEeCChh---cccceEEEEccCCC--CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 044112 98 EQPMNIT---QFRRISGYVTQDEV--LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~~~---~~~~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 171 (610)
|+++... ...++|-+++||++ +.|.+.+.+-|....++......+++.+++.+.|+.+||- +.+|-.+ +
T Consensus 74 ~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~-----~ 148 (267)
T COG4167 74 DHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP-----H 148 (267)
T ss_pred CccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccch-----h
Confidence 9998532 23467999999985 7899999999998887765556677788999999999995 4566554 7
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||-||||||++||||+.+|+|++.||..++||...+.++.++.-++.++.|.+-|.++.+... +..++|+|+||++|+
T Consensus 149 ~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~-iKHi~D~viVM~EG~ 227 (267)
T COG4167 149 MLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGM-IKHISDQVLVMHEGE 227 (267)
T ss_pred hcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhH-hhhhcccEEEEecCc
Confidence 9999999999999999999999999999999999999999999999999999999999999984 888999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|++.++.
T Consensus 228 vvE~G~t~~v~ 238 (267)
T COG4167 228 VVERGSTADVL 238 (267)
T ss_pred eeecCChhhhh
Confidence 99999998753
No 350
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-35 Score=360.66 Aligned_cols=206 Identities=31% Similarity=0.446 Sum_probs=172.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.++++|++++++. ++++ .+|+|+|+++++||.++|+||||||||||+++|.|.+++. +|.+.
T Consensus 614 ~I~~~~vsF~y~~-------------~~~~-~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~--~G~i~-- 675 (1495)
T PLN03232 614 AISIKNGYFSWDS-------------KTSK-PTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA--ETSSV-- 675 (1495)
T ss_pred cEEEEeeEEEcCC-------------CCCC-ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCccc--CCCEE--
Confidence 5999999999941 1223 6999999999999999999999999999999999999876 77652
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCC
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 170 (610)
..++.++||+|++.++.. |++|||.|+.. .+ +++.+++++..+|.+ -.+|.|| +.+
T Consensus 676 -------~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~----~~----~e~~~~vl~~~~L~~di~~Lp~Gd~T~IG-e~G 738 (1495)
T PLN03232 676 -------VIRGSVAYVPQVSWIFNA-TVRENILFGSD----FE----SERYWRAIDVTALQHDLDLLPGRDLTEIG-ERG 738 (1495)
T ss_pred -------EecCcEEEEcCccccccc-cHHHHhhcCCc----cC----HHHHHHHHHHhCCHHHHHhCCCCCCceec-CCC
Confidence 346789999999999986 99999998742 11 345566666666543 3467776 457
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASL-LKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~-L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
..||||||||++||||+.++|+|++||||||+||+.++.++++. ++... .++|+|++||+++ ..+.+|+|++|++
T Consensus 739 ~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~~--~l~~aD~Ii~L~~ 814 (1495)
T PLN03232 739 VNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQLH--FLPLMDRIILVSE 814 (1495)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECChh--hHHhCCEEEEEeC
Confidence 78999999999999999999999999999999999999999765 55442 4799999999996 4688999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|+++..|+.+++.
T Consensus 815 G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 815 GMIKEEGTFAELS 827 (1495)
T ss_pred CEEEEecCHHHHH
Confidence 9999999998875
No 351
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-35 Score=276.92 Aligned_cols=189 Identities=28% Similarity=0.453 Sum_probs=167.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.++.+||+++- +.+ .++.++||++.+||++-|.|||||||||||++|+|+.+|+ +|+|.++
T Consensus 2 ~L~a~~L~~~R----------------~e~-~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~--~G~v~~~ 62 (209)
T COG4133 2 MLEAENLSCER----------------GER-TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD--AGEVYWQ 62 (209)
T ss_pred cchhhhhhhcc----------------Ccc-eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCC--CCeEEec
Confidence 35677777765 556 8999999999999999999999999999999999999987 9999999
Q ss_pred CEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 98 EQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|++++. +.+++.+-|+-.++.+-+.|||+|||.|..++... .....+.++++.+||....|.+++ .||-
T Consensus 63 ~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~----~~~~~i~~Al~~vgL~g~~dlp~~-----~LSA 133 (209)
T COG4133 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS----GNAATIWEALAQVGLAGLEDLPVG-----QLSA 133 (209)
T ss_pred CCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC----CchhhHHHHHHHcCcccccccchh-----hcch
Confidence 998864 33567788999999999999999999999876532 124568899999999999999985 9999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcH
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~ 235 (610)
||||||+|||-.++.+++.+||||+++||......+-.++..-+. +|-.||.+||||..
T Consensus 134 GQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l~ 192 (209)
T COG4133 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPLP 192 (209)
T ss_pred hHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCccC
Confidence 999999999999999999999999999999999999999998875 46799999999864
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.2e-35 Score=266.28 Aligned_cols=194 Identities=30% Similarity=0.463 Sum_probs=169.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVLV 96 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~~ 96 (610)
++..+||+... +.+ .+|.++|++|.+||++-|||||||||||||..+.|.+.+. ..+|++.+
T Consensus 2 ~l~l~nvsl~l----------------~g~-cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l 64 (213)
T COG4136 2 MLCLKNVSLRL----------------PGS-CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL 64 (213)
T ss_pred ceeeeeeeecC----------------CCc-eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEE
Confidence 46788888665 445 7999999999999999999999999999999999999876 67999999
Q ss_pred CCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 97 NEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 97 ~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
|++.++. ...+|++|+.+||+.+||.++|.+|+.|+..-.. +-+.+++.++..|++.||....++.. ..|||
T Consensus 65 ~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~~~--KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSG 137 (213)
T COG4136 65 NEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATL--KGNARRNAANAALERSGLDGAFHQDP-----ATLSG 137 (213)
T ss_pred CCeeccccchhhhheeeeecccccccccccccceEEecCccc--ccHHHHhhHHHHHHHhccchhhhcCh-----hhcCc
Confidence 9999874 4567889999999999999999999999753222 22355667899999999998887654 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcH
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~ 235 (610)
|||-||++-|+|+..|+.++||||+|.||..-+.+..+..-.-.++.|..+|.+|||...
T Consensus 138 GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 138 GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 999999999999999999999999999999999999998877667789999999999863
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.7e-34 Score=329.89 Aligned_cols=205 Identities=30% Similarity=0.439 Sum_probs=163.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||++++ +.+ .+|+|+||++++||+++|+||||||||||||+|+|+.+|+ +|+|.++
T Consensus 3 ~l~i~~ls~~~----------------~~~-~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~--~G~I~~~ 63 (635)
T PRK11147 3 LISIHGAWLSF----------------SDA-PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD--DGRIIYE 63 (635)
T ss_pred EEEEeeEEEEe----------------CCc-eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC--CeEEEeC
Confidence 68999999999 345 7999999999999999999999999999999999999877 9999998
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHH------------------------------HHHhc--CC-CCHHHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMY------------------------------SARLR--LH-VGLNRA 144 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~------------------------------~~~~~--~~-~~~~~~ 144 (610)
|.. .++|++|++......+|.+++.. ...+. .. ....+.
T Consensus 64 ~~~--------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 135 (635)
T PRK11147 64 QDL--------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQL 135 (635)
T ss_pred CCC--------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccH
Confidence 632 25677775433333455554321 11100 00 001123
Q ss_pred HHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 044112 145 KARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGK 224 (610)
Q Consensus 145 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~ 224 (610)
+++++++++.+|+.. ++++ ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.
T Consensus 136 ~~~~~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~ 204 (635)
T PRK11147 136 ENRINEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QG 204 (635)
T ss_pred HHHHHHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CC
Confidence 457889999999963 5555 599999999999999999999999999999999999999999999876 24
Q ss_pred EEEEEecCCcHHHHHhcceEEEeeCCeEE-EEcChhHH
Q 044112 225 TIVLTIHQPGFRILELFDQILLLSKGTVV-HHGSLDLL 261 (610)
Q Consensus 225 tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~ 261 (610)
|||++|||+.. +.++||++++|++|+++ +.|+.++.
T Consensus 205 tvlivsHd~~~-l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 205 SIIFISHDRSF-IRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred EEEEEeCCHHH-HHHhcCeEEEEECCEEEEecCCHHHH
Confidence 99999999984 78899999999999997 56887653
No 354
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=7e-35 Score=359.28 Aligned_cols=205 Identities=31% Similarity=0.482 Sum_probs=174.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCce-eEEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVS-GSVLV 96 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~-G~I~~ 96 (610)
.|+++|++++++. ++.+ .+|+|+|+++++||.++|+||||||||||+++|.|.+++. + |+|.+
T Consensus 614 ~I~~~nvsf~y~~-------------~~~~-~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~--~GG~I~l 677 (1622)
T PLN03130 614 AISIKNGYFSWDS-------------KAER-PTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPR--SDASVVI 677 (1622)
T ss_pred ceEEEeeEEEccC-------------CCCC-ceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccC--CCceEEE
Confidence 5999999999941 1223 6899999999999999999999999999999999999876 8 89974
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCCC
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIGGES 169 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~ 169 (610)
++.++||+|++.++.. |++|||.|+... .+++.+++++..+|.+. .+|.+| +.
T Consensus 678 ----------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~--------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IG-e~ 737 (1622)
T PLN03130 678 ----------RGTVAYVPQVSWIFNA-TVRDNILFGSPF--------DPERYERAIDVTALQHDLDLLPGGDLTEIG-ER 737 (1622)
T ss_pred ----------cCeEEEEcCccccCCC-CHHHHHhCCCcc--------cHHHHHHHHHHhCcHHHHHhCCCccccccc-CC
Confidence 4569999999999985 999999987421 24556777777776542 367776 45
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS-LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+..||||||||++||||+.++|+|++||||||+||+.+++++++ .++... .|+|+|++||+++ ..+.+|+|++|+
T Consensus 738 G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l~--~l~~aD~Ii~L~ 813 (1622)
T PLN03130 738 GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQLH--FLSQVDRIILVH 813 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCHh--HHHhCCEEEEEe
Confidence 67899999999999999999999999999999999999998875 556553 4799999999995 468899999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|+++..|+.+++.
T Consensus 814 ~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 814 EGMIKEEGTYEELS 827 (1622)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999998875
No 355
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.5e-34 Score=275.16 Aligned_cols=156 Identities=23% Similarity=0.347 Sum_probs=132.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+|+|+|+++++||+++|+||||||||||||+|.+ + +|+|.++|... ...++.++|++|
T Consensus 9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~--~G~v~~~~~~~--~~~~~~~~~~~q------------- 67 (176)
T cd03238 9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----A--SGKARLISFLP--KFSRNKLIFIDQ------------- 67 (176)
T ss_pred eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----c--CCcEEECCccc--ccccccEEEEhH-------------
Confidence 79999999999999999999999999999999963 3 79999988732 112344788877
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHHHHHHHHHhC--CCEEEEeCCCCCCCH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRVSIGVDLVHD--PAVLLIDEPTSGLDS 205 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~--p~llllDEPtsgLD~ 205 (610)
.++++.++|.. ..++++ +.||||||||++||++|+.+ |++++|||||+|||+
T Consensus 68 --------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred --------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 23577788875 356554 69999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 206 ASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 206 ~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
.++..+.+.|+++++ .|+|||++||+++. + +.+|++++|.+|+..
T Consensus 123 ~~~~~l~~~l~~~~~-~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 123 QDINQLLEVIKGLID-LGNTVILIEHNLDV-L-SSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEECCCCCC
Confidence 999999999999864 68999999999973 4 789999999775543
No 356
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-34 Score=269.35 Aligned_cols=153 Identities=38% Similarity=0.684 Sum_probs=137.9
Q ss_pred EEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe
Q 044112 21 TKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100 (610)
Q Consensus 21 ~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~ 100 (610)
++|+++.+ ..+ .+++++|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.+
T Consensus 2 ~~~~~~~~----------------~~~-~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~--~G~i~~~~~~ 62 (157)
T cd00267 2 IENLSFRY----------------GGR-TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT--SGEILIDGKD 62 (157)
T ss_pred eEEEEEEe----------------CCe-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ccEEEECCEE
Confidence 57888887 233 6999999999999999999999999999999999999876 9999999987
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH
Q 044112 101 MNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE 177 (610)
Q Consensus 101 ~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe 177 (610)
+.. ...++.++|++| |||||
T Consensus 63 ~~~~~~~~~~~~i~~~~q---------------------------------------------------------lS~G~ 85 (157)
T cd00267 63 IAKLPLEELRRRIGYVPQ---------------------------------------------------------LSGGQ 85 (157)
T ss_pred cccCCHHHHHhceEEEee---------------------------------------------------------CCHHH
Confidence 643 345567899998 99999
Q ss_pred hhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 178 KRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 178 rqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+||++||++++.+|++++|||||+|||..++..+.+.|+++.+. ++|+++++|+++ ++...+|+++++++|+
T Consensus 86 ~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 86 RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE-GRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 99999999999999999999999999999999999999998754 799999999998 4778889999999875
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-34 Score=266.47 Aligned_cols=216 Identities=29% Similarity=0.445 Sum_probs=174.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.++++++|+.| +.. .-.+||||++.|||+++|+|+|||||||||++|++++.|+ +|+|.+.
T Consensus 6 LL~V~~lsk~Y----------------g~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~--~G~v~Y~ 66 (258)
T COG4107 6 LLSVSGLSKLY----------------GPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD--AGTVTYR 66 (258)
T ss_pred ceeehhhhhhh----------------CCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCC--CCeEEEE
Confidence 58899999999 444 5789999999999999999999999999999999999987 9999986
Q ss_pred CEe---CC-----hhc----ccceEEEEccCCC--CCC----CCCHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHHcCCc
Q 044112 98 EQP---MN-----ITQ----FRRISGYVTQDEV--LFP----LLTVKETLM-YSARLRLHVGLNRAKARVSELLKELGLE 158 (610)
Q Consensus 98 g~~---~~-----~~~----~~~~~~yv~Q~~~--l~~----~lTv~E~l~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 158 (610)
-.+ .+ ..+ .|..-|+|.|++. +-. .-.+.|-++ .+++- ..+.++...++|+++.++
T Consensus 67 ~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RH-----YG~iR~~a~~WL~~VEI~ 141 (258)
T COG4107 67 MRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-----YGNIRAEAQDWLEEVEID 141 (258)
T ss_pred cCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhh-----hhhHHHHHHHHHHhcccC
Confidence 533 22 111 2345699999974 322 223344333 22221 234566778899999886
Q ss_pred ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHH
Q 044112 159 HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRIL 238 (610)
Q Consensus 159 ~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~ 238 (610)
..+ + ++.|+..|||+|||+.|||.|++.|+++|+||||.|||..-+.+++++++.+.++.|.+++++|||..- +-
T Consensus 142 ~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-ar 216 (258)
T COG4107 142 LDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-AR 216 (258)
T ss_pred ccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HH
Confidence 532 2 345789999999999999999999999999999999999999999999999999999999999999963 45
Q ss_pred HhcceEEEeeCCeEEEEcChhHHH
Q 044112 239 ELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 239 ~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
-++||.++|++|+++..|-++.+.
T Consensus 217 Lla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 217 LLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HhhhcceeecCCCEeccccccccc
Confidence 579999999999999999887654
No 358
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.7e-34 Score=325.40 Aligned_cols=181 Identities=29% Similarity=0.395 Sum_probs=154.5
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE-----------ECCEeCChh--c---ccceEEE
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL-----------VNEQPMNIT--Q---FRRISGY 112 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~-----------~~g~~~~~~--~---~~~~~~y 112 (610)
.+|++++ .+++||++||+||||||||||||+|+|+++|+ +|+|. ++|+++... . .+..+++
T Consensus 88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~--~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~ 164 (590)
T PRK13409 88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPN--LGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVH 164 (590)
T ss_pred eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC--CccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceee
Confidence 5899999 99999999999999999999999999999887 99997 999887421 1 1233566
Q ss_pred EccCCCCCCC---CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHh
Q 044112 113 VTQDEVLFPL---LTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVH 189 (610)
Q Consensus 113 v~Q~~~l~~~---lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 189 (610)
.+|.....|. .||+|++... +..++++++++.+||.+..|+.+ .+|||||||||+||++|+.
T Consensus 165 ~~q~~~~~p~~~~~tv~e~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~ia~al~~ 229 (590)
T PRK13409 165 KPQYVDLIPKVFKGKVRELLKKV----------DERGKLDEVVERLGLENILDRDI-----SELSGGELQRVAIAAALLR 229 (590)
T ss_pred cccchhhhhhhhcchHHHHHHhh----------hHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhc
Confidence 6665443333 2999998631 23457889999999998888887 5999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
+|++|+|||||++||+.++..+.+.|++++ + |+|||+++|+++ .+..++|++++|+++
T Consensus 230 ~p~lllLDEPts~LD~~~~~~l~~~i~~l~-~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 230 DADFYFFDEPTSYLDIRQRLNVARLIRELA-E-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999996 4 899999999998 588999999999864
No 359
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=298.70 Aligned_cols=218 Identities=29% Similarity=0.473 Sum_probs=184.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.+.|.|+++.|. +.+ ++|+++|+++++|+.+|++||||+||||++++|-..+++. +|.|.+
T Consensus 261 g~v~F~~V~F~y~---------------~~r-~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~--sG~I~i 322 (497)
T COG5265 261 GAVAFINVSFAYD---------------PRR-PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN--SGSITI 322 (497)
T ss_pred ceEEEEEEEeecc---------------ccc-hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCc--CceEEE
Confidence 3488999999993 445 8999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHcCCcccccccccCC
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKA-----RVSELLKELGLEHVANVRIGGE 168 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~ 168 (610)
||+++.. +..|+.||.||||..||.. |...|+.++.. ..+.++..+ .+...++ .+.+-.++.|| +
T Consensus 323 d~qdir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~---~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vg-e 395 (497)
T COG5265 323 DGQDIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRP---DATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVG-E 395 (497)
T ss_pred cchhHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCc---cccHHHHHHHHHHhhhhHHHH--hCchhhhcccc-h
Confidence 9999743 5688999999999999886 99999988632 113333222 2222333 34566788887 5
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
..-.|||||||||+|||+++.+|+||++||.||.||..+.+.+...|++.+ .|+|.+++-|.++. + --+|.+++|+
T Consensus 396 rglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrlst-i-~~adeiivl~ 471 (497)
T COG5265 396 RGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLST-I-IDADEIIVLD 471 (497)
T ss_pred heeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhhh-c-cCCceEEEee
Confidence 556799999999999999999999999999999999999999999999987 48999999999984 4 5689999999
Q ss_pred CCeEEEEcChhHHHH
Q 044112 249 KGTVVHHGSLDLLEH 263 (610)
Q Consensus 249 ~G~iv~~g~~~~~~~ 263 (610)
+|+|++.|..+++..
T Consensus 472 ~g~i~erg~h~~ll~ 486 (497)
T COG5265 472 NGRIVERGTHEELLA 486 (497)
T ss_pred CCEEEecCcHHHHHH
Confidence 999999999988764
No 360
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-33 Score=348.77 Aligned_cols=210 Identities=25% Similarity=0.375 Sum_probs=169.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.++++|+++.++. +.+ .+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++
T Consensus 636 ~i~~~~~~~~~~~--------------~~~-~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~--~G~i~~~ 698 (1522)
T TIGR00957 636 SITVHNATFTWAR--------------DLP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV--EGHVHMK 698 (1522)
T ss_pred cEEEEEeEEEcCC--------------CCC-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccC--CcEEEEC
Confidence 6999999999831 123 6999999999999999999999999999999999999876 9999998
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHHcCCc-ccccccccCCCCCccC
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVS--ELLKELGLE-HVANVRIGGESSRGIS 174 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~--~~l~~lgL~-~~~~~~vg~~~~~~LS 174 (610)
| .++||+|++.+++ .|++||+.|+... ..++.++.++ ++.+.++.. +-.++.+| +.+..||
T Consensus 699 g----------~i~yv~Q~~~l~~-~Ti~eNI~~g~~~----~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LS 762 (1522)
T TIGR00957 699 G----------SVAYVPQQAWIQN-DSLRENILFGKAL----NEKYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLS 762 (1522)
T ss_pred C----------EEEEEcCCccccC-CcHHHHhhcCCcc----CHHHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCC
Confidence 7 3899999998875 6999999986421 1111111111 122333332 22345665 4578999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMA-VKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la-~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
||||||++||||++.+|++++||||||+||+.++..+.+.+.+.. ...|+|+|++||+++. ...+|++++|++|+++
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKIS 840 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEE
Confidence 999999999999999999999999999999999999999997531 1247899999999973 4669999999999999
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
..|+.+++.
T Consensus 841 ~~g~~~~l~ 849 (1522)
T TIGR00957 841 EMGSYQELL 849 (1522)
T ss_pred eeCCHHHHH
Confidence 999998875
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.8e-33 Score=343.13 Aligned_cols=188 Identities=24% Similarity=0.441 Sum_probs=156.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+|+|+|+++++||+++|+|||||||||||++|+|..++. +|+|.++| .++||+|++.+++. ||+||
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~--~G~i~~~g----------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS--EGKIKHSG----------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEECC----------EEEEEeCCCccCCc-cHHHH
Confidence 6999999999999999999999999999999999999876 99999988 38999999999885 99999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLE-------HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS 201 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 201 (610)
+.|+... ..+ +.+++++..+|. +-.++.+| +.+..||||||||++||||++.+|++++|||||+
T Consensus 507 I~~g~~~----~~~----~~~~~~~~~~L~~~l~~l~~g~~t~vg-~~g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSY----DEY----RYTSVIKACQLEEDIALFPEKDKTVLG-EGGITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhcccc----chH----HHHHHHHHHhHHHHHHhcccccccccc-CcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9987431 111 122222222222 12245565 4578999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 202 GLDSASALNVASL-LKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 202 gLD~~~~~~i~~~-L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
|||+.++..+++. ++++. .|+|+|++||+++. + ..+|++++|++|+++..|+.+++.
T Consensus 578 aLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM--SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh--cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999985 66664 38999999999974 4 569999999999999999998875
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.1e-32 Score=303.98 Aligned_cols=207 Identities=31% Similarity=0.429 Sum_probs=174.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++|+++++ +.+ .+++|+|+++.+|+.+||+|+||||||||||+|+|...|+ +|+|..
T Consensus 2 ~~i~~~~ls~~~----------------g~~-~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~--~G~i~~ 62 (530)
T COG0488 2 SMITLENLSLAY----------------GDR-PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD--SGEVTR 62 (530)
T ss_pred ceEEEeeeEEee----------------CCc-eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC--CCeEee
Confidence 468999999999 556 8999999999999999999999999999999999999887 999987
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC-----------------------------CHHHHHHH
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV-----------------------------GLNRAKAR 147 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~-----------------------------~~~~~~~~ 147 (610)
.+. -.++|++|+....+..||.|.+.-+..-.... ...+.+.+
T Consensus 63 ~~~--------~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~ 134 (530)
T COG0488 63 PKG--------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEAR 134 (530)
T ss_pred cCC--------ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHH
Confidence 532 24899999999999999999887654210000 00012357
Q ss_pred HHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEE
Q 044112 148 VSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIV 227 (610)
Q Consensus 148 v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi 227 (610)
+..++..+|+.+. ++++ .+||||||.||+||++|+.+|++|+|||||+.||..+..-+-+.|++. .| |+|
T Consensus 135 ~~~~L~gLg~~~~-~~~~-----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tvi 204 (530)
T COG0488 135 AEEALLGLGFPDE-DRPV-----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVI 204 (530)
T ss_pred HHHHHhcCCCCcc-cCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEE
Confidence 7888999999877 7777 599999999999999999999999999999999999999999999864 46 999
Q ss_pred EEecCCcHHHHHhcceEEEeeCCeEE-EEcChhHH
Q 044112 228 LTIHQPGFRILELFDQILLLSKGTVV-HHGSLDLL 261 (610)
Q Consensus 228 ~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~ 261 (610)
++|||-.. +-+.|++|+-++.|++. |.|..+..
T Consensus 205 iVSHDR~F-Ld~V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 205 VVSHDRYF-LDNVATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred EEeCCHHH-HHHHhhheEEecCCceeEecCCHHHH
Confidence 99999875 78899999999999864 77777654
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.1e-32 Score=316.28 Aligned_cols=219 Identities=23% Similarity=0.260 Sum_probs=161.8
Q ss_pred CCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC-CCcee
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL-RRVSG 92 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~-~~~~G 92 (610)
.+..+|+++|++++| +.+ .+|+|+|+++++||.+||+|||||||||||++|+|+... .+.+|
T Consensus 173 ~~~~~I~i~nls~~y----------------~~~-~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g 235 (718)
T PLN03073 173 PAIKDIHMENFSISV----------------GGR-DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNC 235 (718)
T ss_pred CCceeEEEceEEEEe----------------CCC-EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCC
Confidence 455679999999999 344 699999999999999999999999999999999996411 13378
Q ss_pred EEEECCEeC-----Ch------------hcccceEEEEccCCCCCCCCCHHHHHHH-----------------HH-HhcC
Q 044112 93 SVLVNEQPM-----NI------------TQFRRISGYVTQDEVLFPLLTVKETLMY-----------------SA-RLRL 137 (610)
Q Consensus 93 ~I~~~g~~~-----~~------------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~-----------------~~-~~~~ 137 (610)
+|.+.++.. +. ...++.++|++|++.+... ++.++... .. ++..
T Consensus 236 ~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 314 (718)
T PLN03073 236 QILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLEL 314 (718)
T ss_pred EEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHh
Confidence 887655432 11 0012335667765432211 11111100 00 0000
Q ss_pred CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044112 138 HVGLNRAKARVSELLKELGLE-HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLK 216 (610)
Q Consensus 138 ~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~ 216 (610)
......++++.++++.+|+. +..++++ ..|||||||||+||++|+.+|++|+|||||++||+.+...+.+.|+
T Consensus 315 -~~~~~~~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~ 388 (718)
T PLN03073 315 -IDAYTAEARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLL 388 (718)
T ss_pred -cCcchHHHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 00112345677888889986 4456666 5999999999999999999999999999999999999999999998
Q ss_pred HHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE-EEcChhHH
Q 044112 217 YMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV-HHGSLDLL 261 (610)
Q Consensus 217 ~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv-~~g~~~~~ 261 (610)
++ +.|||++||+.. .+...||++++|++|+++ |.|+.++.
T Consensus 389 ~~----~~tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 389 KW----PKTFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred Hc----CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 75 579999999987 478899999999999996 77877653
No 364
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=5.6e-30 Score=302.25 Aligned_cols=211 Identities=30% Similarity=0.497 Sum_probs=178.7
Q ss_pred CCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee
Q 044112 13 RKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG 92 (610)
Q Consensus 13 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G 92 (610)
......++++|.+++.+ +.... ..|+|||+++++|+++||+||-|||||+||.+|.|.++.. +|
T Consensus 513 ~~~~~~i~i~~~sfsW~-------------~~~~~-~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~--sG 576 (1381)
T KOG0054|consen 513 EAGENAIEIKNGSFSWD-------------SESPE-PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL--SG 576 (1381)
T ss_pred CCCCceEEEeeeeEecC-------------CCCCc-ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc--cc
Confidence 34455689999998873 22333 5899999999999999999999999999999999999855 99
Q ss_pred EEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccc-------ccc
Q 044112 93 SVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN-------VRI 165 (610)
Q Consensus 93 ~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~v 165 (610)
+|.++|. ++||+|++.++.. |||||+.|+... .+++-+++++...|++..+ |.|
T Consensus 577 ~v~v~gs----------iaYv~Q~pWI~ng-TvreNILFG~~~--------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeI 637 (1381)
T KOG0054|consen 577 SVAVNGS----------VAYVPQQPWIQNG-TVRENILFGSPY--------DEERYDKVIKACALKKDLEILPFGDLTEI 637 (1381)
T ss_pred eEEEcCe----------EEEeccccHhhCC-cHHHhhhcCccc--------cHHHHHHHHHHccCHhHHhhcCCCCccee
Confidence 9999886 8999999998876 999999998543 3456677777777765443 334
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
| +++-.||||||||+++|||+-+|.+|++||.|.|++|++....+.+..-+.. -.+||+|++|||.+ ..+.+|+|+
T Consensus 638 G-ErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~-L~~KT~ILVTHql~--~L~~ad~Ii 713 (1381)
T KOG0054|consen 638 G-ERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL-LRGKTVILVTHQLQ--FLPHADQII 713 (1381)
T ss_pred c-CCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh-hcCCEEEEEeCchh--hhhhCCEEE
Confidence 3 6788999999999999999999999999999999999999999986655433 34799999999985 589999999
Q ss_pred EeeCCeEEEEcChhHHH
Q 044112 246 LLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~~ 262 (610)
+|++|++...|+.+|+.
T Consensus 714 vl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 714 VLKDGKIVESGTYEELL 730 (1381)
T ss_pred EecCCeEecccCHHHHH
Confidence 99999999999999987
No 365
>PTZ00243 ABC transporter; Provisional
Probab=99.98 E-value=1.1e-31 Score=330.40 Aligned_cols=189 Identities=30% Similarity=0.453 Sum_probs=152.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++ +.++|++|++.+++ .||+||
T Consensus 674 ~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~--~G~i~~~----------~~i~yv~Q~~~l~~-~Tv~en 740 (1560)
T PTZ00243 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS--EGRVWAE----------RSIAYVPQQAWIMN-ATVRGN 740 (1560)
T ss_pred eeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEEC----------CeEEEEeCCCccCC-CcHHHH
Confidence 6999999999999999999999999999999999999876 8999763 46999999998875 699999
Q ss_pred HHHHHHhcCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC
Q 044112 129 LMYSARLRLHVGLNRAK-----ARVSELLKEL--GLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS 201 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 201 (610)
+.|+... ..+..+ ...++.++.+ |+. +.+| +.+..||||||||++|||||+.+|++++|||||+
T Consensus 741 I~~~~~~----~~~~~~~~~~~~~l~~~l~~l~~g~~----t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~s 811 (1560)
T PTZ00243 741 ILFFDEE----DAARLADAVRVSQLEADLAQLGGGLE----TEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLS 811 (1560)
T ss_pred HHcCChh----hHHHHHHHHHHhhhHHHHHHhhccch----HHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9985321 111111 1123334444 433 3333 3457999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 202 GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 202 gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
+||+.++..+++.+..... .|+|+|++||+++. .+.+|++++|++|++++.|+.+++.
T Consensus 812 aLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 812 ALDAHVGERVVEECFLGAL-AGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999875432222 48999999999963 4789999999999999999998764
No 366
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=1.9e-31 Score=314.75 Aligned_cols=216 Identities=23% Similarity=0.338 Sum_probs=184.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|++.+|.. +.. .+|||||++|+|||-+||+|+-|||||||.++|-++..+. +|+|.+
T Consensus 1137 G~I~f~~~~~RYrp--------------~lp-~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~--~G~I~I 1199 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP--------------NLP-LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPA--EGEILI 1199 (1381)
T ss_pred CeEEEEEeEEEeCC--------------CCc-chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCcc--CCeEEE
Confidence 36999999999941 333 7999999999999999999999999999999999999876 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||.++.. .++|++++.+||||.+|.. |||+||.=.- +-.++.+.++|+..+|.+ ..|..|
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~--------e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v- 1269 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD--------EYSDDEIWEALERCQLKDVVSSLPGGLDSEV- 1269 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCCCceecC-ccccccCccc--------ccCHHHHHHHHHHhChHHHHhhCCcCCCcee-
Confidence 9999864 6899999999999999998 9999985221 112344566666665543 344555
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
.+.+..+|-||||.+++||||+++++||+|||.|++.|+.+-..|.++||+-= .++|||.+-|..+. +. -+|||+|
T Consensus 1270 ~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F--~dcTVltIAHRl~T-Vm-d~DrVlV 1345 (1381)
T KOG0054|consen 1270 SEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF--KDCTVLTIAHRLNT-VM-DSDRVLV 1345 (1381)
T ss_pred cCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh--cCCeEEEEeeccch-hh-hcCeEEE
Confidence 35678999999999999999999999999999999999999999999999853 47999999999984 54 4899999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|+++++|+|+++.+
T Consensus 1346 ld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1346 LDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred eeCCeEeecCChHHHHh
Confidence 99999999999998764
No 367
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=5.4e-31 Score=263.87 Aligned_cols=189 Identities=23% Similarity=0.336 Sum_probs=135.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHH-HHHHCCCCCCCceeEEEEC-----------C-E-eCChhccc-ceEEEE
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLL-DILAGMIPLRRVSGSVLVN-----------E-Q-PMNITQFR-RISGYV 113 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL-~~L~g~~~~~~~~G~I~~~-----------g-~-~~~~~~~~-~~~~yv 113 (610)
.+|+|||+++++||+++|+||||||||||+ ..+.. +|++.+. | . .......+ ...++.
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 799999999999999999999999999995 44431 1222110 0 0 00001111 223444
Q ss_pred ccCCC--CCCCCCHH---HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHHHHHHHH
Q 044112 114 TQDEV--LFPLLTVK---ETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRVSIGVDL 187 (610)
Q Consensus 114 ~Q~~~--l~~~lTv~---E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL 187 (610)
.|++. +.|..+|. |...+...+. ..+...++ .+.++.+||.+ ..++.+ .+||||||||++||++|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~laral 152 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF---ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLATQI 152 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh---hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHHHH
Confidence 44432 34445654 3332222111 11222233 56899999976 466655 69999999999999999
Q ss_pred HhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEc
Q 044112 188 VHDP--AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHG 256 (610)
Q Consensus 188 ~~~p--~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g 256 (610)
+.+| ++++|||||+|||+.++..+.+.|+++++ .|.|||++||+++ ++ +.||++++| ++|+++++|
T Consensus 153 ~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 153 GSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 9998 59999999999999999999999999865 5899999999997 34 799999999 999999876
No 368
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=8.8e-32 Score=247.81 Aligned_cols=134 Identities=50% Similarity=0.870 Sum_probs=121.6
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCCCCCCCCHHH
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
|+|+|+++++||+++|+||||||||||+++|+|..++. +|+|.++|+++.. ...++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~--~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPD--SGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHES--EEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999999999999999999999999999876 9999999999865 456788999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS 201 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 201 (610)
| ..+++++++++.+++.+..++.++ .....||||||||++||+||+.+|++++|||||+
T Consensus 79 ~--------------~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N--------------ESDERIEEVLKKLGLEDLLDRKIG-QRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H--------------HHHHHHHHHHHHTTHGGGTGSBGT-SCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c--------------cccccccccccccccccccccccc-cccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 234568899999999988888875 3448999999999999999999999999999996
No 369
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-31 Score=246.58 Aligned_cols=214 Identities=26% Similarity=0.356 Sum_probs=174.9
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|.++|+++++.-. .+.+-+.++++|+|++++.||++++=||||||||||||+|-|.+.++ +|+|.+
T Consensus 3 ~~l~v~~~~KtFtlH----------~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d--~G~I~v 70 (235)
T COG4778 3 TPLNVSNVSKTFTLH----------QQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD--EGQILV 70 (235)
T ss_pred ceeeeecchhheEee----------ecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCC--CceEEE
Confidence 458899999888422 11233347999999999999999999999999999999999999988 999998
Q ss_pred CCEe--CC-----h----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 044112 97 NEQP--MN-----I----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRI 165 (610)
Q Consensus 97 ~g~~--~~-----~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 165 (610)
.-.. ++ + .-.++.+|||.|--...|..+..|.++-.+.-+ +.+.+..++++..++.++++.+..=..
T Consensus 71 ~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~-gv~~~~a~~~a~~Ll~rLnlperLW~L- 148 (235)
T COG4778 71 RHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR-GVPREVARAKAADLLTRLNLPERLWSL- 148 (235)
T ss_pred EeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCCHHHhcC-
Confidence 6432 22 1 123457999999988889988888887765433 446677788899999999997543222
Q ss_pred cCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 166 GGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 166 g~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
.|...||||+|||.|||.++.|-+||+|||||+.||..++.-++++|++- |..|..+|=+-||-+- -...+||++
T Consensus 149 ---aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~-Ka~GaAlvGIFHDeev-re~vadR~~ 223 (235)
T COG4778 149 ---APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA-KARGAALVGIFHDEEV-REAVADRLL 223 (235)
T ss_pred ---CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH-HhcCceEEEeeccHHH-HHHHhhhee
Confidence 24699999999999999999999999999999999999999999999985 5679999999999753 467899999
Q ss_pred EeeC
Q 044112 246 LLSK 249 (610)
Q Consensus 246 ~L~~ 249 (610)
-+..
T Consensus 224 ~~~~ 227 (235)
T COG4778 224 DVSA 227 (235)
T ss_pred eccc
Confidence 8864
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.1e-30 Score=262.18 Aligned_cols=195 Identities=24% Similarity=0.382 Sum_probs=154.2
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHH-----CCC-----CCC---------CceeEEEECCEeCCh------
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILA-----GMI-----PLR---------RVSGSVLVNEQPMNI------ 103 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~-----g~~-----~~~---------~~~G~I~~~g~~~~~------ 103 (610)
.-|+|||..|+.|++++|.|+||||||||++.+. ... .+. ...--|.++..|+..
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 5799999999999999999999999999998552 110 010 111246777776631
Q ss_pred -------hcccc----------------eEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-
Q 044112 104 -------TQFRR----------------ISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH- 159 (610)
Q Consensus 104 -------~~~~~----------------~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~- 159 (610)
..+|+ .+.|..++......+||.|++.|...+. ..+++.++++.+||.+
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~-------~~~~~~~~L~~vgL~~l 161 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP-------KIARKLQTLCDVGLGYI 161 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh-------hHHHHHHHHHHcCCchh
Confidence 11111 1456666666678899999999976542 1245678999999987
Q ss_pred cccccccCCCCCccCHHHhhHHHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH
Q 044112 160 VANVRIGGESSRGISGGEKRRVSIGVDLVHD---PAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFR 236 (610)
Q Consensus 160 ~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~ 236 (610)
..++.+ ..||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|+++.+ .|.|||+++|+++.
T Consensus 162 ~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvIiitH~~~~- 234 (261)
T cd03271 162 KLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD-KGNTVVVIEHNLDV- 234 (261)
T ss_pred hhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-
Confidence 456555 69999999999999999996 799999999999999999999999999974 58999999999973
Q ss_pred HHHhcceEEEe------eCCeEEEEcCh
Q 044112 237 ILELFDQILLL------SKGTVVHHGSL 258 (610)
Q Consensus 237 i~~~~D~v~~L------~~G~iv~~g~~ 258 (610)
+ +.+|+++.| ++|++++.|++
T Consensus 235 i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 I-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 4 689999999 79999999874
No 371
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=2.8e-31 Score=245.42 Aligned_cols=197 Identities=30% Similarity=0.449 Sum_probs=172.2
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCCCCCCCCHH
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
-|-.+|+++..||+.-++|||||||||||-.++|+.+. +|+|.++|+++.. .+..++-+|..|+..-...|.|.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~---sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~ 90 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVW 90 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCCCC---CceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhh
Confidence 37789999999999999999999999999999999854 8999999999853 45667779999988776778899
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHh-----CC--CEEEEeCC
Q 044112 127 ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVH-----DP--AVLLIDEP 199 (610)
Q Consensus 127 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~-----~p--~llllDEP 199 (610)
.++.+. . +.++....++++.+.++|++...+.+ ..|||||-|||-+|...++ || ++|+||||
T Consensus 91 ~YL~L~----q--P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 91 HYLTLH----Q--PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred hhhhhc----C--chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 888653 2 23555667889999999999888776 6999999999999987764 44 69999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 200 TSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 200 tsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
.++||......+-++|.++++ .|.+||++.||.+. ..+.+|++++|++|++...|..+++.
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CcchhHHHHHHHHHHHHHHHh-CCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 999999999999999999996 69999999999995 78999999999999999999998864
No 372
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.4e-29 Score=279.38 Aligned_cols=206 Identities=30% Similarity=0.395 Sum_probs=172.1
Q ss_pred CCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeE
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGS 93 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~ 93 (610)
.....++++|+++.|. +.+ .+++++||.+.+|+.+||+||||+|||||||+|+|...|. +|+
T Consensus 317 ~g~~vl~~~~~~~~y~---------------~~~-~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~ 378 (530)
T COG0488 317 LGKLVLEFENVSKGYD---------------GGR-LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL--SGT 378 (530)
T ss_pred CCCeeEEEeccccccC---------------CCc-eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccC--Cce
Confidence 4567799999999993 224 8999999999999999999999999999999999998876 999
Q ss_pred EEECCEeCChhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 044112 94 VLVNEQPMNITQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSR 171 (610)
Q Consensus 94 I~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 171 (610)
|.+.-. -.+||..|+. .+.+..|+.|++.-... +..+..+...|..+++.. ...++| +
T Consensus 379 v~~g~~--------v~igyf~Q~~~~l~~~~t~~d~l~~~~~-------~~~e~~~r~~L~~f~F~~~~~~~~v-----~ 438 (530)
T COG0488 379 VKVGET--------VKIGYFDQHRDELDPDKTVLEELSEGFP-------DGDEQEVRAYLGRFGFTGEDQEKPV-----G 438 (530)
T ss_pred EEeCCc--------eEEEEEEehhhhcCccCcHHHHHHhhCc-------cccHHHHHHHHHHcCCChHHHhCch-----h
Confidence 987422 2489999986 45588899999865421 111567889999999964 456666 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.||||||.||.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. .| |||++|||... +-+.+++++.+.+ +
T Consensus 439 ~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~G-tvl~VSHDr~F-l~~va~~i~~~~~-~ 512 (530)
T COG0488 439 VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EG-TVLLVSHDRYF-LDRVATRIWLVED-K 512 (530)
T ss_pred hcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CC-eEEEEeCCHHH-HHhhcceEEEEcC-c
Confidence 99999999999999999999999999999999999999999999875 25 99999999986 8899999999998 5
Q ss_pred EE-EEcChhHHHH
Q 044112 252 VV-HHGSLDLLEH 263 (610)
Q Consensus 252 iv-~~g~~~~~~~ 263 (610)
+. +.|..++..+
T Consensus 513 ~~~~~g~y~~y~~ 525 (530)
T COG0488 513 VEEFEGGYEDYLE 525 (530)
T ss_pred eeEcCCCHHHHHH
Confidence 54 4477766443
No 373
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.3e-29 Score=271.42 Aligned_cols=201 Identities=28% Similarity=0.501 Sum_probs=173.7
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh----hcccceEEEEccCC---CCCCC
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI----TQFRRISGYVTQDE---VLFPL 122 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~----~~~~~~~~yv~Q~~---~l~~~ 122 (610)
.++|+||++++||+++|-|-=|||+|-|+++|.|..++. +|+|.+||+++.. ...+..++|||.|. .++..
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~--~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS--SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC--CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCC
Confidence 479999999999999999999999999999999987665 9999999998753 34667899999884 58999
Q ss_pred CCHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEe
Q 044112 123 LTVKETLMYSARLRLH----VGLNRAKARVSELLKELGLE-HVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLID 197 (610)
Q Consensus 123 lTv~E~l~~~~~~~~~----~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllD 197 (610)
++|.||+.++...+.. .+....++.++++.+.+++. ...+..+ ..||||.||||.||+.|.++|++|+||
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilD 426 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILD 426 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEEC
Confidence 9999999998322211 24455567789999999996 3445666 599999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChh
Q 044112 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLD 259 (610)
Q Consensus 198 EPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~ 259 (610)
|||.|.|.-++.+|.++|+++|+ +|++||++|.++. |+..+||||++|++|+++..-+.+
T Consensus 427 EPTRGIDVGAK~eIy~li~~lA~-~G~ail~iSSElp-Ell~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 427 EPTRGIDVGAKAEIYRLIRELAA-EGKAILMISSELP-ELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred CCCcCcccchHHHHHHHHHHHHH-CCCEEEEEeCChH-HHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999999999999996 5999999999997 799999999999999998754444
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=9.5e-30 Score=249.46 Aligned_cols=166 Identities=22% Similarity=0.315 Sum_probs=133.5
Q ss_pred cceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-------CceeEEEECCEeCChhcccceEEEEccCCCCCCCCC
Q 044112 52 KNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-------RVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLT 124 (610)
Q Consensus 52 ~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-------~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lT 124 (610)
+++++++++| +++|+||||||||||+++|+|+.++. +..|++.++|++......++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 99999999999999999999987542 12357888887764334457899999998765
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH----hCCCEEEEeCCC
Q 044112 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV----HDPAVLLIDEPT 200 (610)
Q Consensus 125 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDEPt 200 (610)
|. .. .+++++++++. .+..++.+ ..||||||||++||++|+ .+|++++|||||
T Consensus 89 ------~~--~~-------~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~ 145 (197)
T cd03278 89 ------YS--II-------SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVD 145 (197)
T ss_pred ------ee--EE-------ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCc
Confidence 11 00 12456677776 44455554 699999999999999997 466999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 201 SGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 201 sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+|||+..+..+.+.|+++++ +.|||++||+++. .+.+|+++.+..
T Consensus 146 ~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~~~--~~~~d~v~~~~~ 190 (197)
T cd03278 146 AALDDANVERFARLLKEFSK--ETQFIVITHRKGT--MEAADRLYGVTM 190 (197)
T ss_pred ccCCHHHHHHHHHHHHHhcc--CCEEEEEECCHHH--HhhcceEEEEEe
Confidence 99999999999999999863 6899999999863 578999999975
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.7e-28 Score=248.29 Aligned_cols=181 Identities=17% Similarity=0.306 Sum_probs=132.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC----------------CCCCCcee--------EEEECCEe----
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM----------------IPLRRVSG--------SVLVNEQP---- 100 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~----------------~~~~~~~G--------~I~~~g~~---- 100 (610)
.++++++ |++++|+||||||||||+++|++. +.++ +| +|.+++.+
T Consensus 16 ~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~--~~~~~~~~~v~i~~~~~~~~~~ 88 (243)
T cd03272 16 TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG--SGPSVMSAYVEIIFDNSDNRFP 88 (243)
T ss_pred cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC--CCCCCceEEEEEEEEcCCCccC
Confidence 6788887 789999999999999999999833 3332 34 55665532
Q ss_pred CC--hhcccceEEEEccCCCCCC-CCCHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 101 MN--ITQFRRISGYVTQDEVLFP-LLTVKETLMYSARLRLHVGLN---RAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 101 ~~--~~~~~~~~~yv~Q~~~l~~-~lTv~E~l~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
.. ....++.++|++|+..+++ ..|..|...+........... ..+.++ .+.+++.+..+..+ +.||
T Consensus 89 ~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i---~~l~~l~~~~~~~~-----~~lS 160 (243)
T cd03272 89 IDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKI---NSLTNMKQDEQQEM-----QQLS 160 (243)
T ss_pred CCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCch---HHhhhccccccccc-----cccC
Confidence 11 1245677899999888877 467777666655442221100 001223 33345544445444 6999
Q ss_pred HHHhhHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 175 GGEKRRVSIGVDLVH----DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 175 gGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
||||||++||++|+. +|+++++||||+|||+.++..+++.|++++ + +++||+++|++ ++.+++|++++|.
T Consensus 161 ~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~-~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 161 GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELS-D-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHh-C-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 999999999999974 589999999999999999999999999985 3 78899999986 4789999999986
No 376
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=3.6e-28 Score=249.28 Aligned_cols=207 Identities=24% Similarity=0.368 Sum_probs=173.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|+.|.|+. .. -=+..||+++++||++-|+|.||||||||++.|.|+.+|+ +|+|.+
T Consensus 321 ~~lelrnvrfay~~---------------~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~Pq--sG~I~l 382 (546)
T COG4615 321 KTLELRNVRFAYQD---------------NA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQ--SGEILL 382 (546)
T ss_pred cceeeeeeeeccCc---------------cc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCC--CCceeE
Confidence 36899999999941 11 2478999999999999999999999999999999999987 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
||+|++. +++|+.++-|+-|-.+|+.+--.|+ +...+.++.+|+++.|.+...-.-|+-.+-.|
T Consensus 383 dg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~-------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~kL 449 (546)
T COG4615 383 DGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG-------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLKL 449 (546)
T ss_pred CCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc-------------CCChHHHHHHHHHHHHhhhhcccCCccccccc
Confidence 9999975 5678888888888888875321111 12345688899999888755444343356789
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
|.|||||+++-.|++-+.+|+++||=-+.-||.-++.+.+.+--+-++.||||+.+|||-. -+..+||++.+++|+++
T Consensus 450 StGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~--YF~~ADrll~~~~G~~~ 527 (546)
T COG4615 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH--YFIHADRLLEMRNGQLS 527 (546)
T ss_pred ccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch--hhhhHHHHHHHhcCcee
Confidence 9999999999999999999999999999999999999998887766789999999999965 58999999999999998
Q ss_pred EEc
Q 044112 254 HHG 256 (610)
Q Consensus 254 ~~g 256 (610)
..-
T Consensus 528 e~t 530 (546)
T COG4615 528 ELT 530 (546)
T ss_pred ecc
Confidence 654
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=5.7e-29 Score=246.66 Aligned_cols=177 Identities=18% Similarity=0.213 Sum_probs=135.6
Q ss_pred ccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCC
Q 044112 45 PPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLT 124 (610)
Q Consensus 45 ~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lT 124 (610)
+.+ .+++++++ ++++|+||||||||||+++|.-. +|.+.. ...++.+++++|+..+++.+|
T Consensus 15 ~~~-~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~------------~G~~~~-~~~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 15 AGE-QVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV------------FGFRAS-KMRQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred CCC-eeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH------------hccCHH-HhhhhhHHHHhcCCCCCCCCc
Confidence 344 68999987 89999999999999999999722 233221 111256899999998899999
Q ss_pred HHHHHHHHHHhcC-------CCCHHHHHH--HHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHh----CC
Q 044112 125 VKETLMYSARLRL-------HVGLNRAKA--RVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVH----DP 191 (610)
Q Consensus 125 v~E~l~~~~~~~~-------~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~----~p 191 (610)
+.|++.+...... +...+.... ..+++++.++|.+..++++ +.||+|||||++||++++. +|
T Consensus 76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p 150 (212)
T cd03274 76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPT 150 (212)
T ss_pred eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCC
Confidence 9998776654310 111111111 1256667788887777766 5899999999999999974 57
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 192 AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 192 ~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+++++||||+|||+.++..+.+.|++++ + +.|+|++||++ ++.+.||++++|..
T Consensus 151 ~ililDEPt~gLD~~~~~~l~~~l~~~~-~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 151 PLYVMDEIDAALDFRNVSIVANYIKERT-K-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred CEEEEcCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 9999999999999999999999999985 3 56888888996 47899999999975
No 378
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.94 E-value=3e-26 Score=242.78 Aligned_cols=221 Identities=24% Similarity=0.388 Sum_probs=188.4
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++||+..-. .+. ..+++|||++++||+++|.|-.|-|-+.|+.+|+|+.++. +|+|.
T Consensus 255 ~~vL~V~~L~v~~~---------------~~~-~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~--~G~I~ 316 (501)
T COG3845 255 EVVLEVEDLSVKDR---------------RGV-TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPA--SGRIL 316 (501)
T ss_pred CeEEEEeeeEeecC---------------CCC-ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccC--CceEE
Confidence 56799999998752 123 6799999999999999999999999999999999998765 79999
Q ss_pred ECCEeC----Chhc-ccceEEEEccCC---CCCCCCCHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHHcCCccc-
Q 044112 96 VNEQPM----NITQ-FRRISGYVTQDE---VLFPLLTVKETLMYSARLRL-----H-VGLNRAKARVSELLKELGLEHV- 160 (610)
Q Consensus 96 ~~g~~~----~~~~-~~~~~~yv~Q~~---~l~~~lTv~E~l~~~~~~~~-----~-~~~~~~~~~v~~~l~~lgL~~~- 160 (610)
++|+++ +..+ .+..++|||+|. .+.+.+|+.||+.+...-+. + ....+.++.+.++++++++...
T Consensus 317 l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~ 396 (501)
T COG3845 317 LNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPS 396 (501)
T ss_pred ECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCC
Confidence 999996 3333 345799999986 47889999999998764321 1 1345667788999999998733
Q ss_pred ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 161 ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 161 ~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
.+.+ .+.||||++||+-+||+|..+|++|++.+||.|||..+.+.+.+.|.+.++ .|+.|++++-+++ |++.+
T Consensus 397 ~~~~-----a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dLD-Eil~l 469 (501)
T COG3845 397 PDAP-----ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDLD-EILEL 469 (501)
T ss_pred CCcc-----hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhHH-HHHHh
Confidence 2333 379999999999999999999999999999999999999999999999875 6999999999998 69999
Q ss_pred cceEEEeeCCeEEEEcChhHH
Q 044112 241 FDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~~~~ 261 (610)
+||+.+|.+|+++...+++++
T Consensus 470 sDrIaVi~~Gri~~~~~~~~~ 490 (501)
T COG3845 470 SDRIAVIYEGRIVGIVPPEEA 490 (501)
T ss_pred hheeeeeeCCceecccccccC
Confidence 999999999999988887753
No 379
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=1.4e-27 Score=243.07 Aligned_cols=178 Identities=19% Similarity=0.295 Sum_probs=138.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCE-eCCh-----hcccceEEEEccCC---------CCCCCCCH
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ-PMNI-----TQFRRISGYVTQDE---------VLFPLLTV 125 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~-~~~~-----~~~~~~~~yv~Q~~---------~l~~~lTv 125 (610)
..+++|+||||||||||+++|++.+.+. ..|++...|. ++-. ...+..+++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~-~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGIT-NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhccc-ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 4499999999999999999999998653 2467777766 3211 12234789999985 34678899
Q ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCc--------------------ccccccccCCCCCccCHHHhhHHHHH
Q 044112 126 KETLMYSARLRLH-VGLNRAKARVSELLKELGLE--------------------HVANVRIGGESSRGISGGEKRRVSIG 184 (610)
Q Consensus 126 ~E~l~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~vg~~~~~~LSgGerqRv~ia 184 (610)
.+++......+.. ..++...+++.++++.+|+. +..++ .+..||||||||++||
T Consensus 104 ~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~~la 178 (251)
T cd03273 104 TRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLVALS 178 (251)
T ss_pred EEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHHHHH
Confidence 9988765322110 11223457889999999986 22233 3479999999999999
Q ss_pred HHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 185 VDLV----HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 185 ~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
++|+ .+|+++++||||+|||+.++..+.+.|++++ + |.|||++||++ ++.+.+|+++-+.
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~-g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-K-GSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-C-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9998 5789999999999999999999999999985 3 78999999995 5788999998876
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=3.8e-27 Score=232.32 Aligned_cols=167 Identities=21% Similarity=0.302 Sum_probs=128.2
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHH----CCCCCCCceeEEEECCEeCChhcccceEEEEccCC-----CCCCCC
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILA----GMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDE-----VLFPLL 123 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~----g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~-----~l~~~l 123 (610)
..++++.+| +++|+|||||||||||++|. |..+++ +|.+..+...+.....+..+++++|++ .....+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~--~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPN--SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcc--cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 345667788 99999999999999999995 887665 565542222222334456789999987 445566
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhH------HHHHHHHHhCCCEEEEe
Q 044112 124 TVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRR------VSIGVDLVHDPAVLLID 197 (610)
Q Consensus 124 Tv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR------v~ia~aL~~~p~llllD 197 (610)
|+.|++.+.. .. .+++.+ +.. ++.||+||||| ++||++++.+|+++++|
T Consensus 92 ~~~~~~~~~~-------~~----~~~~~~---------~~~-----~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 92 AILENVIFCH-------QG----ESNWPL---------LDM-----RGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hHhhceeeec-------hH----HHHHHH---------hcC-----ccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 8888886531 11 223333 333 36999999996 78999999999999999
Q ss_pred CCCCCCCHHHHH-HHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 198 EPTSGLDSASAL-NVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 198 EPtsgLD~~~~~-~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|||++||+.++. .+.+.|++++++.|+|||++||+++ ....+|+++.|.+
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 999999999999 9999999987544789999999986 4578999999975
No 381
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.94 E-value=1.5e-26 Score=229.69 Aligned_cols=180 Identities=17% Similarity=0.181 Sum_probs=125.2
Q ss_pred cceeEEEe-CceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC--EeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 52 KNVNCEAR-PGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE--QPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 52 ~~vs~~i~-~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g--~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
++++|... +|++++|+|||||||||||++|++.+.. +..+....+. ..+.....+..+++++|++.... ++.+.
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG-KTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERS 94 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec-CccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEe
Confidence 44555543 5899999999999999999999965421 1123333221 11122334556899999864211 12111
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHh----------CCCEEEEeC
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVH----------DPAVLLIDE 198 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~----------~p~llllDE 198 (610)
. ..+.++..+.+ .++..++.+..++.+ ..||||||||++||++|+. +|++++|||
T Consensus 95 ~--------gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDE 159 (213)
T cd03279 95 R--------GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFIDE 159 (213)
T ss_pred c--------CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeC
Confidence 1 11222111111 234444555555554 6899999999999999985 578999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 199 PtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
||+|||+.+...+.+.|+++++ .|+|||++||+++ .+...+|+++++++|.
T Consensus 160 p~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 160 GFGTLDPEALEAVATALELIRT-ENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 9999999999999999999964 4889999999997 4788899999999875
No 382
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=6.6e-26 Score=249.11 Aligned_cols=198 Identities=30% Similarity=0.423 Sum_probs=164.0
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++||+..-+ ..+ ..|++.++.+++||-+.|.||||||||||+|+|+|+.|.+ +|+|.
T Consensus 390 ~~~i~~~nl~l~~p---------------~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g--~G~I~ 451 (604)
T COG4178 390 DHGITLENLSLRTP---------------DGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SGRIS 451 (604)
T ss_pred cceeEEeeeeEECC---------------CCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC--CCcee
Confidence 56799999998873 334 7899999999999999999999999999999999999887 78885
Q ss_pred ECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc-CCCCCccC
Q 044112 96 VNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG-GESSRGIS 174 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LS 174 (610)
.- -...+-|+||.+.+... |.||-+.|+.... +-.++.+.++|.++||.+..++.=+ ++.-+.||
T Consensus 452 ~P--------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~-----~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS 517 (604)
T COG4178 452 MP--------ADSALLFLPQRPYLPQG-TLREALCYPNAAP-----DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLS 517 (604)
T ss_pred cC--------CCCceEEecCCCCCCCc-cHHHHHhCCCCCC-----CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcC
Confidence 53 12347899999998777 9999998753321 1234567889999999987765432 23557899
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+|||||+++||.|+++|++++|||.|++||+.+...+++.+++-- .+.|||-+.|++. +..+.++.+-+.+
T Consensus 518 ~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~t--l~~~h~~~l~l~~ 588 (604)
T COG4178 518 GGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRPT--LWNFHSRQLELLD 588 (604)
T ss_pred hhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccchh--hHHHHhhheeecc
Confidence 999999999999999999999999999999999999999998743 5899999999986 5677777666543
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=2.3e-25 Score=269.80 Aligned_cols=205 Identities=22% Similarity=0.346 Sum_probs=151.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHH---------HHHCCCCCC-Ccee-----EEEECCEeCCh----------
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLD---------ILAGMIPLR-RVSG-----SVLVNEQPMNI---------- 103 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~---------~L~g~~~~~-~~~G-----~I~~~g~~~~~---------- 103 (610)
..|+|+|+++++||+++|.|+||||||||++ .|.|...+. ..+| -|.++-.++..
T Consensus 609 ~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~ 688 (1809)
T PRK00635 609 HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYI 688 (1809)
T ss_pred CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeeh
Confidence 4699999999999999999999999999999 555543210 1111 12333222210
Q ss_pred ---hccc---------c-----eEEEEccC--------------------------------------CCCCCCCCHHHH
Q 044112 104 ---TQFR---------R-----ISGYVTQD--------------------------------------EVLFPLLTVKET 128 (610)
Q Consensus 104 ---~~~~---------~-----~~~yv~Q~--------------------------------------~~l~~~lTv~E~ 128 (610)
.+.| + ...+.++. ...+...||.|+
T Consensus 689 g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~ev 768 (1809)
T PRK00635 689 KAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADI 768 (1809)
T ss_pred hhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHH
Confidence 0111 0 01112221 124567899999
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHH---hCCCEEEEeCCCCC
Q 044112 129 LMYSARLRL--HVGLNRAKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLV---HDPAVLLIDEPTSG 202 (610)
Q Consensus 129 l~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~---~~p~llllDEPtsg 202 (610)
|.++..-.. ....++..+++ ++++.+||.+. .++.+ ..||||||||++||++|+ .+|++++|||||+|
T Consensus 769 L~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsG 842 (1809)
T PRK00635 769 LEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTG 842 (1809)
T ss_pred HHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCC
Confidence 998765221 11234445566 58899999876 67665 689999999999999998 69999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee------CCeEEEEcChhHHH
Q 044112 203 LDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS------KGTVVHHGSLDLLE 262 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~------~G~iv~~g~~~~~~ 262 (610)
||+.+...+++.|+++++ .|.|||+++|+++. + +.+|++++|. +|++++.|+++++.
T Consensus 843 LD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 843 LHTHDIKALIYVLQSLTH-QGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 999999999999999975 58999999999973 5 8999999996 78999999998864
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=5.2e-25 Score=256.86 Aligned_cols=126 Identities=27% Similarity=0.415 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHHHHHHHHHhCC---CEEEEe
Q 044112 122 LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRVSIGVDLVHDP---AVLLID 197 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p---~llllD 197 (610)
.+||.|++.|...+. . ..+..+.|+.+||.. ..++.+ ..||||||||+.||++|+.+| ++++||
T Consensus 791 ~ltv~E~l~~f~~~~------~-i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llILD 858 (943)
T PRK00349 791 DMTVEEALEFFEAIP------K-IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYILD 858 (943)
T ss_pred cCcHHHHHHHHHhch------h-hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 379999999876542 1 123467899999986 456655 589999999999999999999 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 198 EPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
|||+|||+.+...+++.|+++.+ .|.|||+++|+++. + +.+|+++.| ++|++++.|+++++.
T Consensus 859 EPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~~~-i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 859 EPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNLDV-I-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHHH-H-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 99999999999999999999974 58999999999963 4 689999999 689999999998764
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.93 E-value=4.9e-26 Score=216.15 Aligned_cols=230 Identities=22% Similarity=0.297 Sum_probs=180.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC--CceeEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR--RVSGSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~--~~~G~I~ 95 (610)
.|.++||+..++.. .+..+++++||+++.+||+-+++|+||||||-..|+|+|..+.. -+.-+..
T Consensus 3 LLDIrnL~IE~~Ts-------------qG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~R 69 (330)
T COG4170 3 LLDIRNLTIEFKTS-------------QGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMR 69 (330)
T ss_pred cccccceEEEEecC-------------CCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcc
Confidence 36788999888532 23337999999999999999999999999999999999997653 1233455
Q ss_pred ECCEeC---Chhccc----ceEEEEccCCC--CCCCCCHHHHHHHHHHhcC--CC---CHHHHHHHHHHHHHHcCCcccc
Q 044112 96 VNEQPM---NITQFR----RISGYVTQDEV--LFPLLTVKETLMYSARLRL--HV---GLNRAKARVSELLKELGLEHVA 161 (610)
Q Consensus 96 ~~g~~~---~~~~~~----~~~~yv~Q~~~--l~~~lTv~E~l~~~~~~~~--~~---~~~~~~~~v~~~l~~lgL~~~~ 161 (610)
+++.++ ++++.| +.+++++|++. +-|.-+|...|.-..-.+. +. --.-++.++-++|.++|+.+..
T Consensus 70 f~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHk 149 (330)
T COG4170 70 FDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK 149 (330)
T ss_pred cccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHH
Confidence 566553 233333 45789999985 5565555444432211110 00 0112456788999999998766
Q ss_pred cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 162 NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 162 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
|-. ..++.+|--||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+.+|.||++++||... +.+.|
T Consensus 150 DIM--~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~ 226 (330)
T COG4170 150 DIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWA 226 (330)
T ss_pred HHH--HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHh
Confidence 543 357789999999999999999999999999999999999999999999999998899999999999985 89999
Q ss_pred ceEEEeeCCeEEEEcChhHHHH
Q 044112 242 DQILLLSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 242 D~v~~L~~G~iv~~g~~~~~~~ 263 (610)
|++-||.=|+-++.++.+++.+
T Consensus 227 d~i~VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 227 DKINVLYCGQTVESAPSEELVT 248 (330)
T ss_pred hheEEEEecccccccchhHHhc
Confidence 9999999999999999888753
No 386
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=1.9e-25 Score=237.68 Aligned_cols=206 Identities=26% Similarity=0.345 Sum_probs=163.2
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
+.-.+.++|+++.|+ +.. .++++++|-+..++-+|++||||+|||||||++.|.+.|. .|.|
T Consensus 386 p~pvi~~~nv~F~y~---------------~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~--~G~v 447 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYS---------------DNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPT--IGMV 447 (614)
T ss_pred CCCeEEEeccccCCC---------------Ccc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccc--cccc
Confidence 344578899988883 222 6999999999999999999999999999999999999876 8888
Q ss_pred EECCEeCChhcccceEEEEccC--CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCC
Q 044112 95 LVNEQPMNITQFRRISGYVTQD--EVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSR 171 (610)
Q Consensus 95 ~~~g~~~~~~~~~~~~~yv~Q~--~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 171 (610)
.-.-+. .+++..|+ +.+.-..++.|++.=.. +.+...+.+..+|.++||.. ..+.++ +
T Consensus 448 s~~~H~--------~~~~y~Qh~~e~ldl~~s~le~~~~~~------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~ 508 (614)
T KOG0927|consen 448 SRHSHN--------KLPRYNQHLAEQLDLDKSSLEFMMPKF------PDEKELEEMRSILGRFGLTGDAQVVPM-----S 508 (614)
T ss_pred cccccc--------cchhhhhhhHhhcCcchhHHHHHHHhc------cccchHHHHHHHHHHhCCCccccccch-----h
Confidence 544332 23444444 33444567777765321 11334567889999999984 445555 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+||+|||+||..|+.++..|.+|+|||||+|||..+...+.+.|.+. .| +||+++||... |-++++++.+..+|.
T Consensus 509 ~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~G-gvv~vSHDfrl-I~qVaeEi~~c~~~~ 583 (614)
T KOG0927|consen 509 QLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PG-GVVLVSHDFRL-ISQVAEEIWVCENGT 583 (614)
T ss_pred hcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CC-ceeeeechhhH-HHHHHHHhHhhccCc
Confidence 99999999999999999999999999999999999999999999875 24 89999999985 899999999999976
Q ss_pred E-EEEcChhHHH
Q 044112 252 V-VHHGSLDLLE 262 (610)
Q Consensus 252 i-v~~g~~~~~~ 262 (610)
+ .+.|+...-.
T Consensus 584 ~~~~~G~i~~yk 595 (614)
T KOG0927|consen 584 VTKWDGDIEIYK 595 (614)
T ss_pred eeecCccHHHHH
Confidence 5 4677665433
No 387
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=227.39 Aligned_cols=175 Identities=29% Similarity=0.390 Sum_probs=145.7
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHH
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETL 129 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l 129 (610)
-|+-=.+++..||+++++||||-||||+.++|||.++|+ +|+ .. .-.++|=||--.--...||++.|
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l 422 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLL 422 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHH
Confidence 355556788889999999999999999999999999987 775 11 12478888875555667999988
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 044112 130 MYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASAL 209 (610)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 209 (610)
.-..+-... ......++++-|+|++..++.+ .+|||||.|||+||.+|..++++++||||++-||+..+.
T Consensus 423 ~~~~~~~~~-----~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~ 492 (591)
T COG1245 423 RSAIRSAFG-----SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRI 492 (591)
T ss_pred HHhhhhhcc-----cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHH
Confidence 765432211 1123457888999999999988 599999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 210 NVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 210 ~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+.+.||+.+.+.++|.+++.||.-. +--+.||+++.+
T Consensus 493 ~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 493 IVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 99999999999899999999999874 556789998875
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=9.6e-24 Score=245.89 Aligned_cols=125 Identities=26% Similarity=0.397 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHHHHHHHHHh---CCCEEEEe
Q 044112 122 LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRVSIGVDLVH---DPAVLLID 197 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~---~p~llllD 197 (610)
.+||.|.+.|...+.. ..+..++++.+||.. ..++.+ +.|||||+||+.||++|+. +|++++||
T Consensus 789 ~~tv~e~~~f~~~~~~-------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llILD 856 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS-------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYILD 856 (924)
T ss_pred CCcHHHHHHHHHhccc-------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEEEE
Confidence 4688888888755321 123457889999975 356555 6999999999999999997 59999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHH
Q 044112 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLL 261 (610)
Q Consensus 198 EPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~ 261 (610)
|||+|||+.++..+++.|+++.+ .|.|||+++|+++. + +.+|+++.| ++|++++.|+++++
T Consensus 857 EPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 857 EPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999974 58999999999973 4 689999999 78999999998764
No 389
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=2.4e-24 Score=211.37 Aligned_cols=171 Identities=17% Similarity=0.137 Sum_probs=124.9
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCC----hhcccceEEEEccCCCCCCCCCHH
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN----ITQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~----~~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
++++++++.+| +.+|+|||||||||||.+|....... .. ....|.... ...-...+.+++|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~--~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~---- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGK--AS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN---- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCC--cc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC----
Confidence 47788888888 88999999999999999998543211 00 011122111 11123457888887665541
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHH----HhCCCEEEEeCCCCC
Q 044112 127 ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDL----VHDPAVLLIDEPTSG 202 (610)
Q Consensus 127 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL----~~~p~llllDEPtsg 202 (610)
+ .....+++++++++. .+..++++ +.||+|||||++||+++ +.+|++++|||||+|
T Consensus 84 -----------~-~~~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 84 -----------P-LCVLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred -----------c-CCHHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 1 111224567777776 55566655 69999999999999999 589999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh--CCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 203 LDSASALNVASLLKYMAVK--QGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~--~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
||+.++..+.+.|++++++ .+.|||+++|+++. +.++ |+|-+|..++
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~~-d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LASS-DDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-cccc-cceeEEEecC
Confidence 9999999999999998654 24699999999984 6554 9999998754
No 390
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.91 E-value=2e-24 Score=229.85 Aligned_cols=214 Identities=21% Similarity=0.346 Sum_probs=148.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..+.+.|++.++ .+. .+++|+++++.+|+-+||+|+|||||||+|++|+|...|.+..=.++.
T Consensus 74 ~dvk~~sls~s~----------------~g~-~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ 136 (614)
T KOG0927|consen 74 RDVKIESLSLSF----------------HGV-ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYL 136 (614)
T ss_pred ccceeeeeeecc----------------CCc-eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhh
Confidence 347778888877 344 799999999999999999999999999999999999887643333444
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH------------------hcCC-CCHHHHHHHHHHHHHHcCC
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR------------------LRLH-VGLNRAKARVSELLKELGL 157 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~------------------~~~~-~~~~~~~~~v~~~l~~lgL 157 (610)
-.+++.+... +.+-++.+ +.-..+.-++.-+. .|+. ...+..+.++.++|..+|-
T Consensus 137 ls~e~~ps~~-~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf 210 (614)
T KOG0927|consen 137 LSREIEPSEK-QAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGF 210 (614)
T ss_pred hcccCCCchH-HHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCC
Confidence 3333321110 00000100 00011111111000 0000 0112234455666666665
Q ss_pred -cccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH
Q 044112 158 -EHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFR 236 (610)
Q Consensus 158 -~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~ 236 (610)
.+.+++.+ .++|||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+.- .+ ++|+++|.-+.
T Consensus 211 ~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d--~~-~lVi~sh~QDf- 281 (614)
T KOG0927|consen 211 LSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD--RI-ILVIVSHSQDF- 281 (614)
T ss_pred CHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc--Cc-eEEEEecchhh-
Confidence 45566666 6999999999999999999999999999999999999999999997652 12 89999998775
Q ss_pred HHHhcceEEEeeCCe-EEEEcChhHHH
Q 044112 237 ILELFDQILLLSKGT-VVHHGSLDLLE 262 (610)
Q Consensus 237 i~~~~D~v~~L~~G~-iv~~g~~~~~~ 262 (610)
+=..|.+|+-|.+++ +.|.|+.+...
T Consensus 282 ln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 282 LNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred hhhHhhhhheecccceeeecCCHHHHh
Confidence 788999999999999 56778877643
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.90 E-value=3.3e-24 Score=217.69 Aligned_cols=181 Identities=17% Similarity=0.208 Sum_probs=121.2
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe--CCh--------hcccceEEEEccCCCC-CCCCCHHH
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP--MNI--------TQFRRISGYVTQDEVL-FPLLTVKE 127 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~--~~~--------~~~~~~~~yv~Q~~~l-~~~lTv~E 127 (610)
.++ +++|+|||||||||||++|++.+.+. .|++..++.. +.. ....-.+.|..|++.. .-..++++
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~--~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEK--SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCC--cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 99999999999999999999987653 4655443321 000 1122224444444321 11111111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccc---------ccC--------CCCCccCHHHhhHHHHHHHHHhC
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVR---------IGG--------ESSRGISGGEKRRVSIGVDLVHD 190 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------vg~--------~~~~~LSgGerqRv~ia~aL~~~ 190 (610)
... ..+.. .+....+.++++++.+|+....+.. +.+ ..+..||||||||++||++++.+
T Consensus 98 ~~~---~~~in-gk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 98 GSS---SYRIN-GKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred Cce---EEEEC-CEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 100 00111 1122244567888999986432111 111 12378999999999999999875
Q ss_pred ----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 191 ----PAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 191 ----p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|+++++||||+|||+..+..+.+.|+++++ .|.+||++||+++ +.+.+|++++|.+
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred ccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 899999999999999999999999999874 4899999999964 6789999999974
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=216.73 Aligned_cols=206 Identities=19% Similarity=0.291 Sum_probs=164.8
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
+...+++++|+..-+. .+. .+.+|+|++|++|+-+.|.||||||||+||++|+|+.+.. +|++
T Consensus 430 ~Dn~i~~e~v~l~tPt--------------~g~-~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~--~G~l 492 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPT--------------NGD-LLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPST--GGKL 492 (659)
T ss_pred ccceEEeeeeeecCCC--------------CCc-eeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccC--CCeE
Confidence 3467999999988641 133 6889999999999999999999999999999999999865 8988
Q ss_pred EECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc------CC
Q 044112 95 LVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG------GE 168 (610)
Q Consensus 95 ~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~ 168 (610)
.--...- .+.+-|+||.|.+--. |.||.+.|...--.+.++....+++.+.|+.++|.|..++.=| -+
T Consensus 493 ~k~~~~~-----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~d 566 (659)
T KOG0060|consen 493 TKPTDGG-----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWD 566 (659)
T ss_pred EecccCC-----CCceEEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhcc
Confidence 7543321 1458999999987655 9999998874321121222335678888888888877654322 13
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.-..||+||+||++.||.+.++|++-+|||-||++|......+.+.+++ .|.|.|-+.|..+ +.++-|.++-|+
T Consensus 567 W~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRkS--L~kfHd~~L~~~ 640 (659)
T KOG0060|consen 567 WMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRKS--LWKFHDYVLRMD 640 (659)
T ss_pred HHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHHH--HHhhhhEEEEec
Confidence 4568999999999999999999999999999999999999999988875 4899999999986 578889999887
Q ss_pred C
Q 044112 249 K 249 (610)
Q Consensus 249 ~ 249 (610)
.
T Consensus 641 g 641 (659)
T KOG0060|consen 641 G 641 (659)
T ss_pred C
Confidence 5
No 393
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2e-22 Score=208.73 Aligned_cols=193 Identities=25% Similarity=0.331 Sum_probs=155.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|-++||++.|+ +.+ +++++++|-|.-..-+||+||||.||||||++|.|-+.|. .|+..-
T Consensus 585 PvLGlH~VtFgy~---------------gqk-pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~--~GE~RK 646 (807)
T KOG0066|consen 585 PVLGLHDVTFGYP---------------GQK-PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPN--DGELRK 646 (807)
T ss_pred CeeecccccccCC---------------CCC-chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCC--cchhhc
Confidence 3478899999884 445 8999999999999999999999999999999999999886 776632
Q ss_pred CCEeCChhcccceEEEEccCC--CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 97 NEQPMNITQFRRISGYVTQDE--VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
..|-+||+.-|+. .+-..-|.-|.|.-... ++ .+.+...|-.+||...++|.- +..||
T Consensus 647 --------nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN--lp------yq~ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 647 --------NHRLRIGWFDQHANEALNGEETPVEYLQRKFN--LP------YQEARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred --------cceeeeechhhhhHHhhccccCHHHHHHHhcC--CC------hHHHHHHhhhhhhhhccceEe----eeecC
Confidence 2344689988874 46666788787754332 22 233556788999998888763 57999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|||+-||++|.--+..|+||||||||++||..+...+.+.|++. .-.||+++||-+. +.+---.++|+.+..|
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney----~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY----NGGVIMVSHDERL-IVETDCNLWVVENQGI 779 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc----cCcEEEEecccce-eeecCceEEEEccCCh
Confidence 99999999999999999999999999999999999999999875 2389999999875 5555567777776443
No 394
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.88 E-value=8.1e-22 Score=187.09 Aligned_cols=215 Identities=23% Similarity=0.308 Sum_probs=166.1
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
.+..|+++++.|+|+ ... +++-|+|++++.|.-..++|.||||||||||+|+|---.. .|.|
T Consensus 10 ~~~aievsgl~f~y~---------------~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~--~~~v 71 (291)
T KOG2355|consen 10 SDFAIEVSGLQFKYK---------------VSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVG--GGVV 71 (291)
T ss_pred ccceEEEeccEEecc---------------cCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccccc--CCeE
Confidence 356799999999994 334 7999999999999999999999999999999999975443 5899
Q ss_pred EECCEeCCh--------------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc
Q 044112 95 LVNEQPMNI--------------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV 160 (610)
Q Consensus 95 ~~~g~~~~~--------------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 160 (610)
.++|++.-. .++.+.++.--+- -+-..+++.+ +.|+... .+ -+|-+++++.+++.-.
T Consensus 72 ~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~agev-plq~D~sae~-mifgV~g----~d---p~Rre~LI~iLDIdl~ 142 (291)
T KOG2355|consen 72 QVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAGEV-PLQGDISAEH-MIFGVGG----DD---PERREKLIDILDIDLR 142 (291)
T ss_pred EEcCcCccccccccccCceeEecccccccccccccc-cccccccHHH-HHhhccC----CC---hhHhhhhhhheeccce
Confidence 999986411 1223333322211 1223456544 3344321 11 1455677888877533
Q ss_pred ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 161 ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 161 ~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
.. -+.+|-||||||.|++.|+..-++|+|||-|--||..++.++++.+++-.++.|.|||..||-.+- +...
T Consensus 143 WR-------mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~W 214 (291)
T KOG2355|consen 143 WR-------MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETW 214 (291)
T ss_pred EE-------EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhc
Confidence 22 147999999999999999999999999999999999999999999999998899999999999984 8899
Q ss_pred cceEEEeeCCeEEEEcChhHHHHH
Q 044112 241 FDQILLLSKGTVVHHGSLDLLEHR 264 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~~~~~~~ 264 (610)
..+++.+++|+++..-+.+++.++
T Consensus 215 pthl~yi~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 215 PTHLVYIKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred chhEEEecCCeeeeccccchhhhh
Confidence 999999999999987666655443
No 395
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.87 E-value=8.6e-24 Score=206.90 Aligned_cols=208 Identities=23% Similarity=0.362 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHHHHHHHHHHh-hHHHHHH
Q 044112 332 KEVIILVQRFSSNIRRTKQLF-AARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQIGFFAFSLTFLLSSTTE-GLPIYLE 409 (610)
Q Consensus 332 ~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~-~i~~~~~ 409 (610)
+|++.+++|+++..+|||... ...++..++.++++|.+|.++++. .++. ++.|++++.+...++.... .......
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNS--QDGF-NRPGLIFGSIIFSFFSSISGSSISFER 77 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccc--cccc-ccceeeehhhHHhhhhhcccchhhhhh
Confidence 599999999999999999888 899999999999999999998843 4444 6677777777766644444 4477889
Q ss_pred HhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044112 410 ERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALV 489 (610)
Q Consensus 410 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~ 489 (610)
||..+.||+.++.|++.+|.+|+.+.+++..++.++++..+.|++.|++.+ +++.+++.+++..+++.++|.++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~ 155 (210)
T PF01061_consen 78 ERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALF 155 (210)
T ss_pred hccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccch
Confidence 999999999999999999999999999999999999999999999999887 778888888888899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHh
Q 044112 490 PNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEY 544 (610)
Q Consensus 490 ~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef 544 (610)
++...+..+.+.+..+++++||.++|.+++|+|++|+.|+||++|++|++..++|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 156 PSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999998876
No 396
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.5e-22 Score=210.98 Aligned_cols=206 Identities=21% Similarity=0.263 Sum_probs=147.4
Q ss_pred CCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeE
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGS 93 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~ 93 (610)
.....|...|++..| +.+ .+|++-++++..|.-+||+||||+|||||||+|+. |.
T Consensus 76 ~~~~Di~~~~fdLa~----------------G~k-~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~ 130 (582)
T KOG0062|consen 76 GKSKDIHIDNFDLAY----------------GGK-ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQ 130 (582)
T ss_pred ccccceeeeeeeeee----------------cch-hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cC
Confidence 345567888888888 566 89999999999999999999999999999999997 22
Q ss_pred EEECCEeCChhcccceEEEEccC-CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCC
Q 044112 94 VLVNEQPMNITQFRRISGYVTQD-EVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA-NVRIGGESSR 171 (610)
Q Consensus 94 I~~~g~~~~~~~~~~~~~yv~Q~-~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~ 171 (610)
|. +-+.. .+.+ -.+++-. +.+....++.+-+.--..+.. .....+...++|..+|.++-+ ..++ +
T Consensus 131 v~--~f~ve-qE~~--g~~t~~~~~~l~~D~~~~dfl~~e~~l~~---~~~l~ei~~~~L~glGFt~emq~~pt-----~ 197 (582)
T KOG0062|consen 131 VS--GFHVE-QEVR--GDDTEALQSVLESDTERLDFLAEEKELLA---GLTLEEIYDKILAGLGFTPEMQLQPT-----K 197 (582)
T ss_pred cC--ccCch-hhee--ccchHHHhhhhhccHHHHHHHHhhhhhhc---cchHHHHHHHHHHhCCCCHHHHhccc-----c
Confidence 21 22211 1111 1233322 123333333333322211110 002234445588999997543 4444 6
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+||||=|-|+++||||..+|++|+|||||+.||..+..-+-+.|+.+ +.|+|+++||-+. +-..|..|+-+++-+
T Consensus 198 slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHDr~F-Ln~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 198 SLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHDRNF-LNTVCTDIIHLENLK 272 (582)
T ss_pred ccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEeccHHH-HHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999764 4799999999875 677888888888766
Q ss_pred E-EEEcChhHHH
Q 044112 252 V-VHHGSLDLLE 262 (610)
Q Consensus 252 i-v~~g~~~~~~ 262 (610)
+ .|.|..++..
T Consensus 273 L~~YkGN~~~Fv 284 (582)
T KOG0062|consen 273 LDYYKGNYSQFV 284 (582)
T ss_pred hhhhcCcHHHHH
Confidence 6 4778877654
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.2e-21 Score=203.66 Aligned_cols=213 Identities=26% Similarity=0.364 Sum_probs=165.3
Q ss_pred CCCCCCCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 8 PHSTDRKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 8 ~~~~~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
|........-.+++.++++.|.. +.- +++.+++..++.-+-.+++|+||+||||++|++.|-..|
T Consensus 352 P~~~e~~~~p~l~i~~V~f~y~p--------------~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~ 416 (582)
T KOG0062|consen 352 PTEGEVLSPPNLRISYVAFEYTP--------------SEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP 416 (582)
T ss_pred CCCCCcCCCCeeEEEeeeccCCC--------------cch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc
Confidence 33334445556889999988731 222 689999999999999999999999999999999998776
Q ss_pred CCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-ccccccc
Q 044112 88 RRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIG 166 (610)
Q Consensus 88 ~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 166 (610)
. .|.+.+++ |.+++|-.|...=+-.+.|-+ +.+..+.+-+. .++.+++-+..+||+. .+...+
T Consensus 417 ~--rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~pG~----~~ee~r~hl~~~Gl~g~la~~si- 480 (582)
T KOG0062|consen 417 T--RGIVGRHP--------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSFPGK----TEEEIRRHLGSFGLSGELALQSI- 480 (582)
T ss_pred c--cceeeecc--------cceecchhHhhhhHHHHHhHH-HHHHHHhCCCC----CHHHHHHHHHhcCCCchhhhccc-
Confidence 5 78776543 456899999765444445544 33333333222 2455677899999974 444444
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
.+||||||-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +| .||++|||.+. +..+|+.+++
T Consensus 481 ----~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~G-GVv~VSHd~~f-i~~~c~E~Wv 551 (582)
T KOG0062|consen 481 ----ASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NG-GVVLVSHDEEF-ISSLCKELWV 551 (582)
T ss_pred ----cccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CC-cEEEEECcHHH-HhhcCceeEE
Confidence 689999999999999999999999999999999999999999999876 24 79999999986 8899999999
Q ss_pred eeCCeEE-EEcChhH
Q 044112 247 LSKGTVV-HHGSLDL 260 (610)
Q Consensus 247 L~~G~iv-~~g~~~~ 260 (610)
.++|++. .+|..++
T Consensus 552 ve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 552 VEDGKVTPIEGGIDK 566 (582)
T ss_pred EcCCcEEeeeccHHH
Confidence 9999986 4455544
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=3.6e-21 Score=191.00 Aligned_cols=170 Identities=21% Similarity=0.298 Sum_probs=110.5
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-----------------CceeEEEE--CCEeCChhcccceEE
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-----------------RVSGSVLV--NEQPMNITQFRRISG 111 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-----------------~~~G~I~~--~g~~~~~~~~~~~~~ 111 (610)
++++.+.+.+| +.+|+|||||||||||++|.-.+-.. ..++.|.+ ++.+. ...++....
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~~r~~~~~~~i~~g~~~~~v~~~~~~~~~-~~~~~n~~~ 91 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGCDEGTIEIELYGNPG-NIQVDNLCQ 91 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccccccCHHHHhhCCCCcEEEEEEEEeCCC-ccccCCceE
Confidence 35667777666 88999999999999999987544211 00111111 11000 012222233
Q ss_pred EEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-cccccccccCCCCCccCHHHhhHHHHHHHH--
Q 044112 112 YVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGL-EHVANVRIGGESSRGISGGEKRRVSIGVDL-- 187 (610)
Q Consensus 112 yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~LSgGerqRv~ia~aL-- 187 (610)
+++|+.. -+..+++.|.+ ..++- .+..+ ..+..||||||||+.++.++
T Consensus 92 ~~~q~~~~~~~~~~~~e~l-----------------------~~~~~~~~~~~-----~~~~~LS~G~~q~~~i~~~la~ 143 (213)
T cd03277 92 FLPQDRVGEFAKLSPIELL-----------------------VKFREGEQLQE-----LDPHHQSGGERSVSTMLYLLSL 143 (213)
T ss_pred EEchHHHHHHHhCChHhHh-----------------------eeeecCCCccc-----cchhhccccHHHHHHHHHHHHH
Confidence 5555432 23344444333 11110 11112 23468999999998877554
Q ss_pred --HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEEecCCcHHHHHhcc--eEEEeeCCe
Q 044112 188 --VHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQG-KTIVLTIHQPGFRILELFD--QILLLSKGT 251 (610)
Q Consensus 188 --~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g-~tvi~~~H~~~~~i~~~~D--~v~~L~~G~ 251 (610)
+.+|+++++||||+|||+.++..+++.|++++++.| .|+|++||++.. +.+.+| ++++|++|+
T Consensus 144 ~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 144 QELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCceEEEEEecCc
Confidence 579999999999999999999999999999875424 589999999864 567776 788888886
No 399
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=3.3e-21 Score=201.49 Aligned_cols=170 Identities=32% Similarity=0.484 Sum_probs=126.2
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hccc-------------c--eEEEEccC---
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFR-------------R--ISGYVTQD--- 116 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~-------------~--~~~yv~Q~--- 116 (610)
.++|++++|+||||-||||-+|+|+|.+.|. =|+- ++.|-.. +.+| . ++..=+|-
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PN--LG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPN--LGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccC--CCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 4789999999999999999999999999886 3322 2211000 0010 0 01111221
Q ss_pred -CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEE
Q 044112 117 -EVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLL 195 (610)
Q Consensus 117 -~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~lll 195 (610)
+..+.. ||.|-|.-. ..+-+.+++++.++|++..|+.+ +.|||||.||++||.+++++.++++
T Consensus 173 iPk~~KG-~v~elLk~~----------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdADvY~ 236 (591)
T COG1245 173 IPKVVKG-KVGELLKKV----------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDADVYF 236 (591)
T ss_pred HHHHhcc-hHHHHHHhh----------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCCEEE
Confidence 111222 455544211 11235788999999999999988 5999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 196 IDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 196 lDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+|||||-||...+.+..+.++++++. +++||++.||+.- +--++|-|.++..
T Consensus 237 FDEpsSyLDi~qRl~~ar~Irel~~~-~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 237 FDEPSSYLDIRQRLNAARVIRELAED-GKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EcCCcccccHHHHHHHHHHHHHHhcc-CCeEEEEechHHH-HHHhhheeEEEec
Confidence 99999999999999999999999864 8999999999963 4456788888764
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.84 E-value=1.3e-20 Score=185.43 Aligned_cols=147 Identities=17% Similarity=0.181 Sum_probs=110.1
Q ss_pred cccceeEEEeCc-eEEEEECCCCCcHHHHHHHHH--------CCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCC
Q 044112 50 ILKNVNCEARPG-EIMAIVGPSGAGKTTLLDILA--------GMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLF 120 (610)
Q Consensus 50 iL~~vs~~i~~G-e~~ailG~nGaGKSTLL~~L~--------g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~ 120 (610)
-..++|+++.+| ++++|.||||+|||||||+|+ |...|. .. ...++|..|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~--~~--------------~~~~~~~~~~~~~- 78 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPA--AE--------------GSSLPVFENIFAD- 78 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccc--cc--------------cccCcCccEEEEe-
Confidence 345799999999 489999999999999999998 432221 00 0013333332111
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCC
Q 044112 121 PLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPT 200 (610)
Q Consensus 121 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt 200 (610)
++..+..+..+ ..+|+||||++.|+++ +.+|+++++|||+
T Consensus 79 ----------------------------------lg~~~~l~~~~-----s~fs~g~~~~~~i~~~-~~~p~llllDEp~ 118 (200)
T cd03280 79 ----------------------------------IGDEQSIEQSL-----STFSSHMKNIARILQH-ADPDSLVLLDELG 118 (200)
T ss_pred ----------------------------------cCchhhhhcCc-----chHHHHHHHHHHHHHh-CCCCcEEEEcCCC
Confidence 11111122222 4799999999999977 5899999999999
Q ss_pred CCCCHHHHHHHHH-HHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 201 SGLDSASALNVAS-LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 201 sgLD~~~~~~i~~-~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
+|||+.....+.. .++++.+ .|.++|++||+. ++.+++|+++.|++|++.+.+
T Consensus 119 ~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 119 SGTDPVEGAALAIAILEELLE-RGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999999974 6787764 589999999984 578999999999999998874
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.81 E-value=2.7e-19 Score=172.68 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=68.2
Q ss_pred cCHHHhhHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 173 ISGGEKRRVSIGVDLV----HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 173 LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
||||||||++||++++ .+|+++++|||++|||+..+..+.+.|+++++ .|+++|+++|+++ ..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~~--~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKKE--MFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHhhCCeEEEEE
Confidence 9999999999999996 69999999999999999999999999999875 4799999999985 467899999997
Q ss_pred C
Q 044112 249 K 249 (610)
Q Consensus 249 ~ 249 (610)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 5
No 402
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.81 E-value=4.6e-20 Score=181.14 Aligned_cols=145 Identities=16% Similarity=0.241 Sum_probs=107.5
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+++|+++.. |++++|+||||||||||||+|+|... +...|.++... .+++|.+.+++.+|+.|+
T Consensus 15 ~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a~------~~~~q~~~l~~~~~~~d~ 79 (199)
T cd03283 15 RVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCAS------SFELPPVKIFTSIRVSDD 79 (199)
T ss_pred eecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEecC------ccCcccceEEEeccchhc
Confidence 5788887765 79999999999999999999998642 11244444221 366777889999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
+.++... ...+ .+++.++++.+++ .+|+++++|||++|+|+..+
T Consensus 80 l~~~~s~----~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 80 LRDGISY----FYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred cccccCh----HHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHH
Confidence 9875421 1122 3567777777652 68999999999999999999
Q ss_pred HHHHH-HHHHHHHhCCcEEEEEecCCcHHHHHh--cceEEE
Q 044112 209 LNVAS-LLKYMAVKQGKTIVLTIHQPGFRILEL--FDQILL 246 (610)
Q Consensus 209 ~~i~~-~L~~la~~~g~tvi~~~H~~~~~i~~~--~D~v~~ 246 (610)
..+.. +++++.+ .|.|+|++||+++. +... .+++-.
T Consensus 124 ~~l~~~ll~~l~~-~~~tiiivTH~~~~-~~~~~~~~~v~~ 162 (199)
T cd03283 124 QAASAAVLKFLKN-KNTIGIISTHDLEL-ADLLDLDSAVRN 162 (199)
T ss_pred HHHHHHHHHHHHH-CCCEEEEEcCcHHH-HHhhhcCCCeEE
Confidence 88754 7888864 58999999999863 4333 334443
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.81 E-value=1.4e-19 Score=187.23 Aligned_cols=188 Identities=32% Similarity=0.444 Sum_probs=143.5
Q ss_pred cccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC------CCceeEEEECCEeCChhcccceEEEEccCC
Q 044112 44 KPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL------RRVSGSVLVNEQPMNITQFRRISGYVTQDE 117 (610)
Q Consensus 44 ~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~------~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~ 117 (610)
...+ .+|+|+|++++||++++|+|+|||||||||++|.|.... .+.+|.|.+--.. ..+.+|-+.
T Consensus 393 ~ier-yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt--------~~a~iPge~ 463 (593)
T COG2401 393 VIER-YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT--------VSALIPGEY 463 (593)
T ss_pred eeee-eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc--------hhhccCccc
Confidence 3445 799999999999999999999999999999999996421 1447877653211 234555543
Q ss_pred C-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEE
Q 044112 118 V-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLI 196 (610)
Q Consensus 118 ~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llll 196 (610)
- -+...|+.|++.-- . .+-....++|++.||.+..-.+ ...+.||-|||.|+.||.++...|.+++.
T Consensus 464 Ep~f~~~tilehl~s~-----t----GD~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~i 531 (593)
T COG2401 464 EPEFGEVTILEHLRSK-----T----GDLNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLI 531 (593)
T ss_pred ccccCchhHHHHHhhc-----c----CchhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEh
Confidence 2 23355676665311 1 1123456789999997532111 23479999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cceEEEeeCCeEE
Q 044112 197 DEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL-FDQILLLSKGTVV 253 (610)
Q Consensus 197 DEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv 253 (610)
||=-+.||+.++..+.+-|.+++++.|.|++++||.|+. +-.+ -|+++++.-|+..
T Consensus 532 DEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 532 DEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-HhccCCceeEEeeccccc
Confidence 999999999999999999999999999999999999974 4455 5899888766653
No 404
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.80 E-value=5.6e-20 Score=183.56 Aligned_cols=152 Identities=20% Similarity=0.265 Sum_probs=116.2
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEE-EEccCCCCCCCCCHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISG-YVTQDEVLFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~-yv~Q~~~l~~~lTv~E 127 (610)
.+.+|++++.++|++++|.||||+||||||++++-. .+..++| |||.+...++
T Consensus 18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------------------~~la~~g~~vpa~~~~~~------ 71 (222)
T cd03285 18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------------------VLMAQIGCFVPCDSADIP------ 71 (222)
T ss_pred eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------------------HHHHHhCCCcCcccEEEe------
Confidence 689999999999999999999999999999999821 1111223 5555432211
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHH--HhCCCEEEEeCC---CCC
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDL--VHDPAVLLIDEP---TSG 202 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL--~~~p~llllDEP---tsg 202 (610)
.++++++.+|+.+.. . +++|.|+++++.+++++ +++|++++|||| |++
T Consensus 72 -------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~ 124 (222)
T cd03285 72 -------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTST 124 (222)
T ss_pred -------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCCh
Confidence 123445566665433 1 58999999999999999 899999999999 999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 203 LDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
||+.+.... .++.+.++.|.++|++||+. ++.+++|++..+++|++...++
T Consensus 125 lD~~~~~~~--il~~l~~~~~~~vlisTH~~--el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 125 YDGFGLAWA--IAEYIATQIKCFCLFATHFH--ELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HHHHHHHHH--HHHHHHhcCCCeEEEEechH--HHHHHhhcCCCeEEEEEEEEEe
Confidence 999888543 33455444578999999963 6889999999999999987764
No 405
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.1e-19 Score=187.68 Aligned_cols=75 Identities=24% Similarity=0.373 Sum_probs=68.3
Q ss_pred ccCHHHhhHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 172 GISGGEKRRVSIGVDLVH----DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
.||||||||+++|++++. +|+++++||||+|||+.....+.+.|+++++ +.|+|+++|++. +.+.+|+++.|
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~~--~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLPQ--VAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechHH--HHHhcCcEEEE
Confidence 599999999999987654 9999999999999999999999999999863 689999999986 56899999999
Q ss_pred eCC
Q 044112 248 SKG 250 (610)
Q Consensus 248 ~~G 250 (610)
.+|
T Consensus 246 ~~~ 248 (276)
T cd03241 246 EKE 248 (276)
T ss_pred EEe
Confidence 876
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.79 E-value=2e-18 Score=209.90 Aligned_cols=197 Identities=23% Similarity=0.334 Sum_probs=143.5
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHH----------CCCCCCCceeEEEECCEeCCh-------------hcc
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILA----------GMIPLRRVSGSVLVNEQPMNI-------------TQF 106 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~----------g~~~~~~~~G~I~~~g~~~~~-------------~~~ 106 (610)
=|+||+..|+-|.+++|.|.||||||||++-.. |.. ...--|.+|-.|+.. ..+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~---~~~~vi~vdQspIgrt~RS~paTY~g~fd~I 1581 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPS---VFSEIIFLDSHPQISSQRSDISTYFDIAPSL 1581 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhccccc---ccCcEEEEeCCCCCCCCCCchhhhhhhHHHH
Confidence 489999999999999999999999999997433 221 123346666655421 001
Q ss_pred cce-------------------------------EEEEccCCCCC--------------------------------CCC
Q 044112 107 RRI-------------------------------SGYVTQDEVLF--------------------------------PLL 123 (610)
Q Consensus 107 ~~~-------------------------------~~yv~Q~~~l~--------------------------------~~l 123 (610)
|+. -|++.=+-.++ -.|
T Consensus 1582 R~lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~m 1661 (1809)
T PRK00635 1582 RNFYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQT 1661 (1809)
T ss_pred HHHHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcC
Confidence 100 01111111111 246
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhC---CCEEEEeCCC
Q 044112 124 TVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHD---PAVLLIDEPT 200 (610)
Q Consensus 124 Tv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~---p~llllDEPt 200 (610)
||.|.+.|.... .+-.+.-+.|.++||.... .| +....|||||.||+-||.+|..+ +.+++|||||
T Consensus 1662 tv~ea~~~F~~~-------~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1662 PIEEVAETFPFL-------KKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred CHHHHHHHhhcc-------HHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 777777765321 1223456788889997542 22 34468999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHHH
Q 044112 201 SGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 201 sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 263 (610)
+||++.....+++.|+++.. .|.|||++.|+++ +.+.+|.++-| +.|++++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~-~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVS-LGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999974 6899999999985 67889999999 3579999999998753
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.79 E-value=2.8e-19 Score=170.01 Aligned_cols=75 Identities=28% Similarity=0.463 Sum_probs=68.5
Q ss_pred ccCHHHhhHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 172 GISGGEKRRVSIGVDLVH----DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+||+||+||+++|++|.. +|+++++|||++|+|+.....+.+.+.+..++ |.++|++||+++ +.+.+|+++.|
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~~--~~~~~d~~~~l 153 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLPE--LAELADKLIHI 153 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCHH--HHHhhhhEEEE
Confidence 599999999999999987 78999999999999999999999999988665 889999999986 46789999998
Q ss_pred eC
Q 044112 248 SK 249 (610)
Q Consensus 248 ~~ 249 (610)
+.
T Consensus 154 ~~ 155 (162)
T cd03227 154 KK 155 (162)
T ss_pred EE
Confidence 64
No 408
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.78 E-value=1.3e-19 Score=191.97 Aligned_cols=176 Identities=23% Similarity=0.403 Sum_probs=135.7
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+...++|.+++|--+.|+||||||||+|.++|+|+.|.. .|...+ + .+..+-|+||.|..- .-|.+|.
T Consensus 496 vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy--~g~L~~------P--~~~~mFYIPQRPYms-~gtlRDQ 564 (728)
T KOG0064|consen 496 VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVY--NGLLSI------P--RPNNIFYIPQRPYMS-GGTLRDQ 564 (728)
T ss_pred eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCccc--CCeeec------C--CCcceEeccCCCccC-cCcccce
Confidence 6889999999999999999999999999999999998754 454432 1 234589999998765 3377777
Q ss_pred HHHHHHhcCCCCHHHH------HHHHHHHHHHcCCccccccccc----CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeC
Q 044112 129 LMYSARLRLHVGLNRA------KARVSELLKELGLEHVANVRIG----GESSRGISGGEKRRVSIGVDLVHDPAVLLIDE 198 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~------~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 198 (610)
+-|. .+.++. ++..+.+|+.+.|++.+.+-.| .+...-||||||||+.+||.+-++|+.-+|||
T Consensus 565 IIYP------dS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDE 638 (728)
T KOG0064|consen 565 IIYP------DSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDE 638 (728)
T ss_pred eecC------CcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhh
Confidence 6553 222221 3456778888888776655544 13446799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 199 PtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
-||+..+.....+.+..+ ..|.+.+-++|+|+ +.++-..++-.
T Consensus 639 cTsAvsidvE~~i~~~ak----~~gi~llsithrps--lwk~h~~ll~~ 681 (728)
T KOG0064|consen 639 CTSAVSIDVEGKIFQAAK----DAGISLLSITHRPS--LWKYHTHLLEF 681 (728)
T ss_pred hhcccccchHHHHHHHHH----hcCceEEEeecCcc--HHHHHHHHHhc
Confidence 999998888877777665 46899999999997 46665554443
No 409
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=4.3e-18 Score=189.06 Aligned_cols=128 Identities=26% Similarity=0.468 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCC---CEEEEeC
Q 044112 122 LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDP---AVLLIDE 198 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p---~llllDE 198 (610)
.|||.|...|.... ..-.+.-+.|..+||.-. +.| +....|||||.|||-+|.+|..+. .+++|||
T Consensus 783 ~MTveEA~~FF~~~-------p~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDE 851 (935)
T COG0178 783 DMTVEEALEFFEAI-------PKIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYILDE 851 (935)
T ss_pred hccHHHHHHHHhcc-------hHHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEeCC
Confidence 46888887776532 112344567778888643 222 445799999999999999999887 8999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHHH
Q 044112 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 199 PtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 263 (610)
||+||-.....++++.|.++.+ .|.|||++.|.++ +.+.+|.|+-| ..|++++.|+|+++.+
T Consensus 852 PTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 852 PTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999985 6999999999995 78999999998 4589999999998764
No 410
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.75 E-value=9.2e-18 Score=196.47 Aligned_cols=134 Identities=24% Similarity=0.405 Sum_probs=110.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhC
Q 044112 120 FPLLTVKETLMYSARLRLHVG--------LNRAKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHD 190 (610)
Q Consensus 120 ~~~lTv~E~l~~~~~~~~~~~--------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~ 190 (610)
+..+||.|.+.|.-.+..... .++..++++ .|+.+||.+. .|+.+ ..|||||||||.||++|..+
T Consensus 434 ~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~ 507 (943)
T PRK00349 434 VSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSG 507 (943)
T ss_pred HhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhC
Confidence 457899999999554432211 012334554 6888999876 67776 59999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 191 P--AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 191 p--~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
| ++++|||||+|||+..+..+++.|+++++ .|.|||+++|+++ ++ ..+|++++| ++|++++.|+++++.
T Consensus 508 ~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 508 LTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 7 99999999999999999999999999964 6999999999997 35 579999999 899999999998864
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.74 E-value=2.5e-18 Score=169.33 Aligned_cols=155 Identities=17% Similarity=0.181 Sum_probs=103.9
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHH
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYS 132 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~ 132 (610)
..++++.+|++++|+|||||||||||++|++..-. ...|.. ... .+..+++..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~~~--~~~~i~~~dqi---~~~~~~~d~---- 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------VPA--ESASIPLVDRI---FTRIGAEDS---- 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------ccc--cccccCCcCEE---EEEecCccc----
Confidence 34556668999999999999999999999954311 012211 100 01123332221 111111111
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044112 133 ARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVA 212 (610)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 212 (610)
.+..+ +.++++++ |++.+.+++.+|+++++||||+|||+.....+.
T Consensus 85 ----------------------------i~~~~-----s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 85 ----------------------------ISDGR-----STFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ----------------------------ccCCc-----eeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11111 35665555 577778889999999999999999999988876
Q ss_pred H-HHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhH
Q 044112 213 S-LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDL 260 (610)
Q Consensus 213 ~-~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 260 (610)
. +++.+. +.+.++|++||++ ++.+.+|++..+..|++...++.++
T Consensus 131 ~~ll~~l~-~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 176 (202)
T cd03243 131 YAVLEHLL-EKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGG 176 (202)
T ss_pred HHHHHHHH-hcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCe
Confidence 5 466665 4589999999986 4678899999999999988886543
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=2.6e-17 Score=192.34 Aligned_cols=133 Identities=23% Similarity=0.382 Sum_probs=107.6
Q ss_pred CCCCHHHHHHHHHHhcCCCC-H-------HHHHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhCC
Q 044112 121 PLLTVKETLMYSARLRLHVG-L-------NRAKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDP 191 (610)
Q Consensus 121 ~~lTv~E~l~~~~~~~~~~~-~-------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p 191 (610)
-.|||.|.+.|...+..... . ++..+++ +.+..+||... .++.+ .+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 46899999998876533211 0 1112222 34677888765 56655 699999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 192 --AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 192 --~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
++++|||||+|||+.+...+++.|+++.+ .|.|||+++|+++ .+ ..+|++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 89999999999999999999999999975 5999999999986 34 699999999 899999999998763
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=9.8e-17 Score=165.11 Aligned_cols=77 Identities=21% Similarity=0.270 Sum_probs=63.0
Q ss_pred CCccCHHHhhHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 170 SRGISGGEKRRVSIGVDLV---------HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
..-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++ + .+++++|+.. .+.++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~----~-q~ii~~~~~~-~~~~~ 254 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR----V-QTFVTTTDLA-DFDAL 254 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC----C-CEEEEeCCch-hccch
Confidence 3568999999999999985 799999999999999999999999999764 2 3455555544 35666
Q ss_pred c---ceEEEeeCCeE
Q 044112 241 F---DQILLLSKGTV 252 (610)
Q Consensus 241 ~---D~v~~L~~G~i 252 (610)
+ ++++.+++|++
T Consensus 255 ~~~~~~i~~l~~g~i 269 (270)
T cd03242 255 WLRRAQIFRVDAGTL 269 (270)
T ss_pred hccCccEEEEeCcEE
Confidence 6 78999999985
No 414
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=2.6e-18 Score=178.38 Aligned_cols=219 Identities=26% Similarity=0.336 Sum_probs=154.2
Q ss_pred CCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeE
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGS 93 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~ 93 (610)
++.+.|.++|.+.+. ..+ .++.|-|++|-.|.-++++||||-||||||+.|+.+--.-+..=+
T Consensus 260 Ena~DIKiEnF~ISA----------------~Gk-~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnID 322 (807)
T KOG0066|consen 260 ENAMDIKIENFDISA----------------QGK-LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNID 322 (807)
T ss_pred hhcccceeeeeeeec----------------ccc-eeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCc
Confidence 455678888887776 334 689999999999999999999999999999999987311111234
Q ss_pred EEECCEeCC-------h---hcccceEEEEccCCC-----CCCCCCHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCC
Q 044112 94 VLVNEQPMN-------I---TQFRRISGYVTQDEV-----LFPLLTVKETLMYS-ARLRLHVGLNRAKARVSELLKELGL 157 (610)
Q Consensus 94 I~~~g~~~~-------~---~~~~~~~~yv~Q~~~-----l~~~lTv~E~l~~~-~~~~~~~~~~~~~~~v~~~l~~lgL 157 (610)
|++..+++- . +.-.++...+..++. --...|+.|-+.-. ..+|.- .....+.++..+|.-||.
T Consensus 323 vLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai-GA~sAEarARRILAGLGF 401 (807)
T KOG0066|consen 323 VLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI-GADSAEARARRILAGLGF 401 (807)
T ss_pred eEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh-ccccchhHHHHHHhhcCC
Confidence 444443321 0 000111122222111 12345777666533 233321 112235567788999998
Q ss_pred cccc-cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH
Q 044112 158 EHVA-NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFR 236 (610)
Q Consensus 158 ~~~~-~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~ 236 (610)
+.-+ +++. ...|||=|-||++||||...|-+|.|||||+.||..+..-+-+.|+.+ .+|.++++||-..
T Consensus 402 skEMQ~rPt-----~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW----kKTLLIVSHDQgF- 471 (807)
T KOG0066|consen 402 SKEMQERPT-----TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW----KKTLLIVSHDQGF- 471 (807)
T ss_pred ChhHhcCCc-----cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh----hheeEEEecccch-
Confidence 7544 4433 689999999999999999999999999999999999998888999876 3699999999986
Q ss_pred HHHhcceEEEeeCCeEE-EEcChhH
Q 044112 237 ILELFDQILLLSKGTVV-HHGSLDL 260 (610)
Q Consensus 237 i~~~~D~v~~L~~G~iv-~~g~~~~ 260 (610)
+-+.|..|+-|++.++- |.|...-
T Consensus 472 LD~VCtdIIHLD~qkLhyYrGNY~~ 496 (807)
T KOG0066|consen 472 LDSVCTDIIHLDNQKLHYYRGNYTL 496 (807)
T ss_pred HHHHHHHHhhhhhhhhhhhcchHHH
Confidence 78899999999988775 4566543
No 415
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=3.7e-17 Score=161.03 Aligned_cols=135 Identities=19% Similarity=0.298 Sum_probs=98.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+.+|++++.++|++++|+||||+|||||++++++..- +.+.-.+| +...+.+++.|+
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~d~ 74 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIFNR 74 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccChhh
Confidence 78999999999999999999999999999999998731 11111233 333455666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
+... ++..+..++.. +.+|+|++|+ +.+.+++++|+++++|||++|+|+...
T Consensus 75 I~~~----------------------~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~ 126 (204)
T cd03282 75 LLSR----------------------LSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSSADG 126 (204)
T ss_pred eeEe----------------------cCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHH
Confidence 6322 22222222222 4799999865 566778999999999999999999876
Q ss_pred HHHH-HHHHHHHHhCCcEEEEEecCCc
Q 044112 209 LNVA-SLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 209 ~~i~-~~L~~la~~~g~tvi~~~H~~~ 234 (610)
..+. ..++.+.+ .|.++|++||+.+
T Consensus 127 ~~l~~~il~~l~~-~~~~~i~~TH~~~ 152 (204)
T cd03282 127 FAISLAILECLIK-KESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHh-cCCEEEEECChHH
Confidence 6654 56777764 5899999999975
No 416
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.67 E-value=4.3e-16 Score=162.15 Aligned_cols=209 Identities=24% Similarity=0.317 Sum_probs=150.1
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCc-----eEEEEECCCCCcHHHHHHHHHCCCCCCCc
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPG-----EIMAIVGPSGAGKTTLLDILAGMIPLRRV 90 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G-----e~~ailG~nGaGKSTLL~~L~g~~~~~~~ 90 (610)
...++.+++++.+.+........+..+.++.+ ..+.+..+.++.| |++..+|.||.|||||+++++|+++|+ .
T Consensus 318 n~rfR~~~l~f~~~~~~~~ek~~~~y~Yp~m~-k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd-~ 395 (592)
T KOG0063|consen 318 NLRFRPECLVFLASDLSSEDRRTGRYSYPKMK-KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPD-E 395 (592)
T ss_pred cccccchhheeeeccccchhhhhheeccCcce-eeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCC-c
Confidence 34455566666664332221111112222333 4667788888777 578999999999999999999999886 2
Q ss_pred eeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 91 SGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 91 ~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
.|+|-. -.++|=||.-.--..-||++.+.--.+ +.-...+-+.++++-|.+++..|.-|
T Consensus 396 ~~e~p~-----------lnVSykpqkispK~~~tvR~ll~~kIr-----~ay~~pqF~~dvmkpL~ie~i~dqev----- 454 (592)
T KOG0063|consen 396 GGEIPV-----------LNVSYKPQKISPKREGTVRQLLHTKIR-----DAYMHPQFVNDVMKPLQIENIIDQEV----- 454 (592)
T ss_pred cCcccc-----------cceeccccccCccccchHHHHHHHHhH-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----
Confidence 333321 136777776554445689887653221 11112355778888888888888777
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+|||||+|||++|..|-..+++++.|||.+-||+..+..--+.+++.--+.++|-.++.||.-. .--++||+++..
T Consensus 455 q~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~ 531 (592)
T KOG0063|consen 455 QGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE 531 (592)
T ss_pred hcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence 69999999999999999999999999999999999999999999988755568899999999753 234789988764
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.63 E-value=8.8e-16 Score=157.07 Aligned_cols=139 Identities=23% Similarity=0.286 Sum_probs=98.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL 137 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~ 137 (610)
.-++|+||||||||||+++|+|.++++ +|+|.++|+++.. .++.+.+++++|++ +.+.++|.|+..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------ 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------ 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------
Confidence 578999999999999999999999887 9999999998742 34555678888865 3455566554210
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044112 138 HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKY 217 (610)
Q Consensus 138 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~ 217 (610)
. + | .....+..+|+++++|||++ ...+..+++.
T Consensus 183 ----~---~-----------------------------~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 183 ----A---E-----------------------------G-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred ----H---H-----------------------------H-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 0 0 1 02223336999999999974 3445555555
Q ss_pred HHHhCCcEEEEEecCCcHHHH------------HhcceEEEeeCCeEEEEcChhH
Q 044112 218 MAVKQGKTIVLTIHQPGFRIL------------ELFDQILLLSKGTVVHHGSLDL 260 (610)
Q Consensus 218 la~~~g~tvi~~~H~~~~~i~------------~~~D~v~~L~~G~iv~~g~~~~ 260 (610)
+. .|.++|+++|+++.+-. .+|||+++|++|+ ..|.+++
T Consensus 216 ~~--~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~ 266 (270)
T TIGR02858 216 LH--AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEA 266 (270)
T ss_pred Hh--CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceee
Confidence 43 48999999998653222 5689999999876 5555543
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.63 E-value=8.3e-16 Score=152.94 Aligned_cols=158 Identities=19% Similarity=0.216 Sum_probs=107.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+.+|++++.++ ++++|.||||+|||||||++++..-. |+ .|..+... +..++++.| +++.+++.|+
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~~--~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPAS--KAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeeccc--cceecceee---EeccCCchhh
Confidence 689999999887 99999999999999999999875422 11 12222211 245677754 5677777776
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCC---CCCCCH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEP---TSGLDS 205 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP---tsgLD~ 205 (610)
+..+... . ..|+++++-+...+.+|+++++||| |+++|.
T Consensus 86 ls~g~s~-------------------------------------f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~ 127 (216)
T cd03284 86 LAGGRST-------------------------------------F-MVEMVETANILNNATERSLVLLDEIGRGTSTYDG 127 (216)
T ss_pred hccCcch-------------------------------------H-HHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHH
Confidence 6432100 0 1233334444444679999999999 888887
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHH
Q 044112 206 ASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 206 ~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
... ...+++.+.+..+.++|++||+. ++.+++|++.-+.+|++...++.+++
T Consensus 128 ~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 128 LSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 552 23344444433378999999996 47889999888888998877766554
No 419
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.55 E-value=1.2e-12 Score=131.97 Aligned_cols=228 Identities=12% Similarity=0.107 Sum_probs=161.0
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc-ccchhH----HHHHHHHHHHHHHHHHHhhHHHHH-HHhHH
Q 044112 340 RFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNAYNDPR-RMKLQT----QIGFFAFSLTFLLSSTTEGLPIYL-EERKI 413 (610)
Q Consensus 340 R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~-~~~~~~----~~g~lff~~~~~~~~~~~~i~~~~-~er~v 413 (610)
|+++..+|||..+..-+++.+++.+++|.++-+.-.++. ..+... -.|.+.+.+...+. ..+..... .|+.+
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~--~~~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSF--FSGISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHhCH
Confidence 667888999999999999999999999998754321110 111111 11222222222111 11222211 23333
Q ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH
Q 044112 414 LMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVPNFI 493 (610)
Q Consensus 414 ~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~ 493 (610)
+.|= ...=-++..|+++|.+.+++..++..+++..+.+++.+.+. ..++.+++..++..++..++|.++++..++.+
T Consensus 79 ~~~~-~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEI-LVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHH-HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3333 33334678999999999999999999998988888877553 34555555666667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccccccccCCccccchHHHHhhcC
Q 044112 494 MGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQALEGTCFLYGDGFLAAQG 573 (610)
Q Consensus 494 ~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~~~~c~~~G~~~L~~~g 573 (610)
.++.+.+.+..+++.+||.+.|.+.+|+|++|+.+++|++|+.|++-..-.++..
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~~------------------------- 210 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVSP------------------------- 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCc-------------------------
Confidence 9999999999999999999999999999999999999999999996543332210
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHH
Q 044112 574 LKDSQKWSNIGVMLAFVFGYRFLCFL 599 (610)
Q Consensus 574 ~~~~~~w~~~~il~~~~~~~~~~~~~ 599 (610)
..+.|.++++++++.+.+.+++..
T Consensus 211 --~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 211 --TFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHH
Confidence 113567888999988888777643
No 420
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.55 E-value=3e-15 Score=145.41 Aligned_cols=81 Identities=17% Similarity=0.204 Sum_probs=58.4
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVA-SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~-~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++.+.++|++||+++ +.+++|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceE
Confidence 478888776433332 34599999999999999999888775 5567676434789999999983 6788876444444
Q ss_pred CeEEE
Q 044112 250 GTVVH 254 (610)
Q Consensus 250 G~iv~ 254 (610)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44433
No 421
>PRK00064 recF recombination protein F; Reviewed
Probab=99.54 E-value=2.2e-13 Score=145.84 Aligned_cols=79 Identities=20% Similarity=0.357 Sum_probs=66.6
Q ss_pred CCCccCHHHhhHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH
Q 044112 169 SSRGISGGEKRRVSIGVDLV---------HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE 239 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~ 239 (610)
....+|.||+|++.+|+.|+ .+|+|++||||+++||+..+..+++.|.++ +..+++|+|+++. +..
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~~~-~~~ 344 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDLED-LAD 344 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCChhh-hhh
Confidence 34689999999999999886 699999999999999999999999998753 3588999998763 555
Q ss_pred hc--ceEEEeeCCeE
Q 044112 240 LF--DQILLLSKGTV 252 (610)
Q Consensus 240 ~~--D~v~~L~~G~i 252 (610)
.+ ++++.+++|++
T Consensus 345 ~~~~~~i~~v~~G~i 359 (361)
T PRK00064 345 LLENAKIFHVEQGKI 359 (361)
T ss_pred hhccCcEEEEeCCEE
Confidence 53 57899999986
No 422
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.50 E-value=7.4e-15 Score=146.31 Aligned_cols=88 Identities=30% Similarity=0.488 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 044112 146 ARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV----HDPAVLLIDEPTSGLDSASALNVASLLKYMAVK 221 (610)
Q Consensus 146 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~ 221 (610)
+.+.+.++..++.. ..+|||||.+++||.-|+ .+.++++||||.++||...+..+.++|+++.+
T Consensus 121 ~~~~~~l~~~~i~~-----------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISP-----------EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTT-----------TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred cccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 45556666666543 279999999999997664 46789999999999999999999999999863
Q ss_pred CCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 222 QGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 222 ~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+.-+|++||++. ++..+|+.+.+.
T Consensus 189 -~~Q~ii~Th~~~--~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 -QSQFIITTHNPE--MFEDADKLIGVT 212 (220)
T ss_dssp -TSEEEEE-S-HH--HHTT-SEEEEEE
T ss_pred -cccccccccccc--cccccccccccc
Confidence 478999999974 789999988764
No 423
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=144.46 Aligned_cols=176 Identities=26% Similarity=0.374 Sum_probs=121.4
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEE---------EEc--cCCCCCCCCCHHH
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISG---------YVT--QDEVLFPLLTVKE 127 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~---------yv~--Q~~~l~~~lTv~E 127 (610)
+||++.+++|.||-||||-|++++|.++|. -|.- + ++..+...++ |-. -++.+-......+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpn--lg~~-----~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQy 169 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRY-----D-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY 169 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCC--CCCC-----C-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHH
Confidence 589999999999999999999999999885 2211 0 0111111111 100 0111111111111
Q ss_pred HHHHHHHhcC--CC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCC
Q 044112 128 TLMYSARLRL--HV--GLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGL 203 (610)
Q Consensus 128 ~l~~~~~~~~--~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgL 203 (610)
...+....+. +. .....++..+++++.+.|.+..++-+ ..|||||-||.+||++.+++.++.++|||.+-|
T Consensus 170 vd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyMFDEpSsYL 244 (592)
T KOG0063|consen 170 VDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYMFDEPSSYL 244 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeEecCCcccc
Confidence 1111111110 00 11222345678889999998888877 489999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 204 DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 204 D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|...+.+-...|+.+.. ..+-||++.||++. +--+.|-+..|..
T Consensus 245 DVKQRLkaA~~IRsl~~-p~~YiIVVEHDLsV-LDylSDFiCcLYG 288 (592)
T KOG0063|consen 245 DVKQRLKAAITIRSLIN-PDRYIIVVEHDLSV-LDYLSDFICCLYG 288 (592)
T ss_pred hHHHhhhHHHHHHHhhC-CCCeEEEEEeechH-HHhhhcceeEEec
Confidence 99999999999999974 57899999999974 4446788888764
No 424
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.48 E-value=2.7e-11 Score=123.56 Aligned_cols=238 Identities=11% Similarity=0.066 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHH--HHHHHHH-HhhH-HHHH
Q 044112 334 VIILVQRFSSNIRRT-KQLFAARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQIGFFAFSL--TFLLSST-TEGL-PIYL 408 (610)
Q Consensus 334 ~~~l~~R~~~~~~Rd-~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~~g~lff~~--~~~~~~~-~~~i-~~~~ 408 (610)
...+.+|+++..+|+ |......+++.++.-+++|..+-....+ ..+ .+...++.-.+ +..++.+ .... ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~--~~g-~~y~~f~~pg~l~~~~~~~~~~~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGS--VDG-VSYAAFLAAGMVATSAMTASTFETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccc--cCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445679999999999 9999999999999999999887543221 111 11111111011 1111111 1111 1222
Q ss_pred H--HhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044112 409 E--ERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFS 486 (610)
Q Consensus 409 ~--er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~ 486 (610)
. |+..+.|-+..-. ++..+.+||++.+.-..++..++...+.++ .|..+. ...+..+..+++..++..++|.++|
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3334444444444 788999999999977777776665555443 344333 3344444555566777789999999
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccccccccCCccccchH
Q 044112 487 ALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQALEGTCFLYGD 566 (610)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~~~~c~~~G~ 566 (610)
++.++.+.+..+...+..|++.+||.+.|.+++|.|++|+.+++|+.|+.|++-..-+++.
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~------------------- 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP------------------- 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-------------------
Confidence 9999999999899999999999999999999999999999999999999999644433221
Q ss_pred HHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044112 567 GFLAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRS 605 (610)
Q Consensus 567 ~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~ 605 (610)
..+.|.++++++++.+++..++...+|+|.
T Consensus 222 ---------~~~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 222 ---------GTQVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 012456788999999988888887776543
No 425
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.47 E-value=2.2e-13 Score=135.31 Aligned_cols=132 Identities=20% Similarity=0.268 Sum_probs=88.1
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHC--CCCCCCceeEEEECCEeCChhcccceEEEEccCCCCC-CCCCH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAG--MIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLF-PLLTV 125 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g--~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~-~~lTv 125 (610)
.+=+|+++.=..+..++|.||||+|||||||.++. .+. . .|..... . .-.++|..|....+ ...++
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la-~--~G~~v~a------~--~~~~~~~d~i~~~l~~~~si 85 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLA-H--IGSFVPA------D--SATIGLVDKIFTRMSSRESV 85 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHH-h--CCCeeEc------C--CcEEeeeeeeeeeeCCccCh
Confidence 34455554322237999999999999999999984 331 1 4544321 1 12356776653221 11121
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC--HHHhhHHHHHHHHHhCCCEEEEeCCCCCC
Q 044112 126 KETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS--GGEKRRVSIGVDLVHDPAVLLIDEPTSGL 203 (610)
Q Consensus 126 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~aL~~~p~llllDEPtsgL 203 (610)
.+ ++| .-|.||++++++++.+|+++++|||++|+
T Consensus 86 ~~--------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gt 121 (213)
T cd03281 86 SS--------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGT 121 (213)
T ss_pred hh--------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCC
Confidence 11 122 35779999999999999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHHh--CCcEEEEEecCCcH
Q 044112 204 DSASALNV-ASLLKYMAVK--QGKTIVLTIHQPGF 235 (610)
Q Consensus 204 D~~~~~~i-~~~L~~la~~--~g~tvi~~~H~~~~ 235 (610)
|+.....+ ...++++.++ .+.++|++||+++.
T Consensus 122 d~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 122 DTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 99765555 5688888653 13589999999863
No 426
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.47 E-value=1.8e-11 Score=123.11 Aligned_cols=223 Identities=11% Similarity=0.055 Sum_probs=145.8
Q ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccchhH-HHHHHHHHHHHHHHHHHhhHHHHHHHh--HHHHHHhcCCC
Q 044112 346 RRTKQLFAARILQSVVAGIVLGTIFMNAYNDPRRMKLQT-QIGFFAFSLTFLLSSTTEGLPIYLEER--KILMRETSRGA 422 (610)
Q Consensus 346 ~Rd~~~~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~-~~g~lff~~~~~~~~~~~~i~~~~~er--~v~~rE~~~~~ 422 (610)
+|||.....-+.+.+++-++++.+|-+.. . ....+. ..|.+-+... .++.+..-.....|| ..+.|=+..-.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~er~~G~l~rl~~~P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-T--HNRGATFIPVLMALAAI--STAFTGQAIAVARDRRYGALKRLGATPL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-C--CcchhHhhHHHHHHHHH--HHHHHHHHHHHHHHHHhCHHHHHhcCCC
Confidence 69999999999999998777777764411 1 112211 1122211111 111122112223333 35555555444
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CHHHHHHHH
Q 044112 423 YRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVP---NFIMGNCLI 499 (610)
Q Consensus 423 Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~---~~~~a~~~~ 499 (610)
++..|+++|++..++..++..+++. +++++.|++.....+ ..++...+..+.+.+++.+++++++ +.+.+..+.
T Consensus 77 -~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~ 153 (232)
T TIGR00025 77 -PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVA 153 (232)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7899999999988888877655554 556677887654332 3333444445566677777777764 444557788
Q ss_pred HHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccccccccCCccccchHHHHhhcCCCCCCh
Q 044112 500 AGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQALEGTCFLYGDGFLAAQGLKDSQK 579 (610)
Q Consensus 500 ~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~ 579 (610)
..+..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..-.++. +....
T Consensus 154 ~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~---------------------------~~~~~ 206 (232)
T TIGR00025 154 NLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV---------------------------DTFGA 206 (232)
T ss_pred HHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC---------------------------ChhhH
Confidence 888899999999999999999999999999999999998654332221 11235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 044112 580 WSNIGVMLAFVFGYRFLCFLILCY 603 (610)
Q Consensus 580 w~~~~il~~~~~~~~~~~~~~l~~ 603 (610)
|.++++++++.+++..++...+|+
T Consensus 207 ~~~~~~l~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 207 VRDLVVVLAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888888888887777666553
No 427
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.47 E-value=1.9e-12 Score=127.79 Aligned_cols=151 Identities=17% Similarity=0.101 Sum_probs=124.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 044112 424 RISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFSALVPNFIMGNCLIAGIM 503 (610)
Q Consensus 424 ~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~ 503 (610)
+++.++++|.+..++..++..+++..+.|++.|++.. ++..+++..++..++..+++.++++++++... .+..+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHHH
Confidence 4567899999999999999999999999999999864 56777777888889999999999999987654 3344455
Q ss_pred HHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccccccccCCccccchHHHHhhcCCCCCChHHHH
Q 044112 504 GSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQALEGTCFLYGDGFLAAQGLKDSQKWSNI 583 (610)
Q Consensus 504 ~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~ 583 (610)
.+.++++|.+.|.+.+|.|++|+.|++|++|+.+++-...+++. ..+.|.++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~----------------------------~~~~~~~~ 185 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN----------------------------DGTLWQAV 185 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc----------------------------HHHHHHHH
Confidence 56777899999999999999999999999999999876665432 01357889
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc
Q 044112 584 GVMLAFVFGYRFLCFLILCYRSY 606 (610)
Q Consensus 584 ~il~~~~~~~~~~~~~~l~~~~~ 606 (610)
++++++.+++.++++..+|+|+|
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999998888776543
No 428
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.43 E-value=1.7e-13 Score=120.01 Aligned_cols=73 Identities=16% Similarity=0.069 Sum_probs=62.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCCCCCCCCH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTV 125 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv 125 (610)
.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. .+.++..+|++|+ +++ -|+
T Consensus 3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti 71 (107)
T cd00820 3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRL 71 (107)
T ss_pred eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhH
Confidence 6899999999999999999999999999999986 5889999998743 3456677888887 444 499
Q ss_pred HHHHHHH
Q 044112 126 KETLMYS 132 (610)
Q Consensus 126 ~E~l~~~ 132 (610)
+|||.++
T Consensus 72 ~~Ni~~~ 78 (107)
T cd00820 72 RLNIFLI 78 (107)
T ss_pred Hhhceee
Confidence 9999884
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.42 E-value=3e-13 Score=156.83 Aligned_cols=130 Identities=23% Similarity=0.323 Sum_probs=90.7
Q ss_pred eeEEEeCc-eEEEEECCCCCcHHHHHHHHHCCC-CCCCceeEEEECCEeCChhcccceEEEEccCCC-CCCCCCHHHHHH
Q 044112 54 VNCEARPG-EIMAIVGPSGAGKTTLLDILAGMI-PLRRVSGSVLVNEQPMNITQFRRISGYVTQDEV-LFPLLTVKETLM 130 (610)
Q Consensus 54 vs~~i~~G-e~~ailG~nGaGKSTLL~~L~g~~-~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~-l~~~lTv~E~l~ 130 (610)
+|+.+.+| ++++|.||||+|||||||+|+|.. .+. .| .+||.+.. .++ +.+.+.
T Consensus 314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq--~G------------------~~Vpa~~~~~~~---~~d~i~ 370 (771)
T TIGR01069 314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ--SG------------------IPIPANEHSEIP---YFEEIF 370 (771)
T ss_pred ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHH--hC------------------CCccCCcccccc---chhhee
Confidence 78888887 999999999999999999999872 211 22 13333221 111 111110
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044112 131 YSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALN 210 (610)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 210 (610)
.. .+ .+ +. +.+ ..+.+|+|+++++.|++.+ .+|+++++|||++|+|+.....
T Consensus 371 --~~--i~--~~---~s---i~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 371 --AD--IG--DE---QS---IEQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred --ee--cC--hH---hH---Hhh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 00 00 00 00 110 1247999999999998876 8999999999999999999999
Q ss_pred H-HHHHHHHHHhCCcEEEEEecCCcH
Q 044112 211 V-ASLLKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 211 i-~~~L~~la~~~g~tvi~~~H~~~~ 235 (610)
+ ..+|+.+.+ .|.++|++||+.+.
T Consensus 423 la~aiLe~l~~-~g~~viitTH~~eL 447 (771)
T TIGR01069 423 LAISILEYLLK-QNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHh-cCCEEEEECChHHH
Confidence 9 567888764 68999999999764
No 430
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.41 E-value=1.3e-12 Score=130.37 Aligned_cols=140 Identities=16% Similarity=0.249 Sum_probs=89.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC-CCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM-IPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~-~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
.+.+|+++.+++|++++|.||||+||||+|+++++. +.+. .|..... +.....-+.+...-+..+|.+...++
T Consensus 19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~--~G~~v~a-~~~~~~~~~~i~~~~~~~d~~~~~~S--- 92 (222)
T cd03287 19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQ--IGSFVPA-SSATLSIFDSVLTRMGASDSIQHGMS--- 92 (222)
T ss_pred EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHh--CCCEEEc-CceEEeccceEEEEecCccccccccc---
Confidence 689999999999999999999999999999999994 3332 5654322 11110111111111111111111110
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSAS 207 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 207 (610)
-=..|-+|++-...-+++|+++++|||.+|.|+..
T Consensus 93 ---------------------------------------------tF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d 127 (222)
T cd03287 93 ---------------------------------------------TFMVELSETSHILSNCTSRSLVILDELGRGTSTHD 127 (222)
T ss_pred ---------------------------------------------hHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhh
Confidence 01234444444445567899999999999998777
Q ss_pred HHHH-HHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 208 ALNV-ASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 208 ~~~i-~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
...+ ..+++.+.+..+.++|++||+++ +.++.
T Consensus 128 ~~~i~~~il~~l~~~~~~~~i~~TH~~~--l~~~~ 160 (222)
T cd03287 128 GIAIAYATLHYLLEEKKCLVLFVTHYPS--LGEIL 160 (222)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEcccHH--HHHHH
Confidence 7765 56777776544889999999986 34444
No 431
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.40 E-value=1.7e-10 Score=117.54 Aligned_cols=237 Identities=14% Similarity=0.135 Sum_probs=160.4
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcC-CCC---c-cc-cch--hHHHHHHHHHHHHHHHHHHh
Q 044112 331 FKEVIILVQRFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNA-YND---P-RR-MKL--QTQIGFFAFSLTFLLSSTTE 402 (610)
Q Consensus 331 ~~q~~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~~~---~-~~-~~~--~~~~g~lff~~~~~~~~~~~ 402 (610)
+++++.+++|.++...|||..+...+++.++.-+++|.+|-.. +.+ + +. .+. .--.|.+.+...+ .++.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~---~~~~ 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLF---NGMQ 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHH---HHHH
Confidence 3678999999999999999999999999999999999998543 110 0 00 011 1111222222221 1221
Q ss_pred -hHH-HHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHH
Q 044112 403 -GLP-IYLEERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNS 480 (610)
Q Consensus 403 -~i~-~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~ 480 (610)
+.. ..-+|+..+.+=+.... ++..+.+++++...-..++..+++..+.+. .|.+.....+......+++..+...+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111 11223334444444444 778899999999988887776655555443 36655544444444445556677889
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCc---chhhhhhhccCcchHHHHHHHHHHhCCCCCcccccccc
Q 044112 481 FVACFSALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNI---PKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQAL 557 (610)
Q Consensus 481 ~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~i---p~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~ 557 (610)
+|.++|+++++.+.+..+.++++.+++..||.+.|.+.+ |.|++|+.+++|+.|..|++=..-+ +.
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~-g~---------- 224 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALY-GQ---------- 224 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHh-CC----------
Confidence 999999999999888888889999999999999998766 8899999999999999998632211 10
Q ss_pred CCccccchHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 044112 558 EGTCFLYGDGFLAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCY 603 (610)
Q Consensus 558 ~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~ 603 (610)
..|..+.+++++.+++..++....|+
T Consensus 225 --------------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 --------------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred --------------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 12556677778888877777776654
No 432
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.38 E-value=8e-13 Score=131.22 Aligned_cols=45 Identities=20% Similarity=0.253 Sum_probs=42.8
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPT-----SGLDSASALNVASLLKYMAV 220 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPt-----sgLD~~~~~~i~~~L~~la~ 220 (610)
-|++++.||++++.+|+++++|||| +|||+..++.+.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999864
No 433
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.36 E-value=8e-12 Score=135.93 Aligned_cols=172 Identities=18% Similarity=0.263 Sum_probs=115.3
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeC---C--------hhcccceEEEEccCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM---N--------ITQFRRISGYVTQDE 117 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~---~--------~~~~~~~~~yv~Q~~ 117 (610)
.+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.- . ...+++.+.++.+.+
T Consensus 147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~--~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSAD--LNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 589999 999999999999999999999999999998876 89999965543 2 123567788888654
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCccCHHHhhHHHHH-HHHHhCCCEE
Q 044112 118 VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH--VANVRIGGESSRGISGGEKRRVSIG-VDLVHDPAVL 194 (610)
Q Consensus 118 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSgGerqRv~ia-~aL~~~p~ll 194 (610)
.-. -.+....+.+ -.+.+.+..-|-.- ..| +++ |.+-| |++. +
T Consensus 224 ~~~---~~r~~~~~~a------------~~iAEyfr~~g~~Vll~~D---------slt-----r~A~A~rEis-----l 269 (438)
T PRK07721 224 QPA---LMRIKGAYTA------------TAIAEYFRDQGLNVMLMMD---------SVT-----RVAMAQREIG-----L 269 (438)
T ss_pred CCH---HHHHHHHHHH------------HHHHHHHHHCCCcEEEEEe---------ChH-----HHHHHHHHHH-----H
Confidence 311 0111111111 11222232223210 011 111 00000 1111 1
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhH
Q 044112 195 LIDEP--TSGLDSASALNVASLLKYMAV-KQGK-----TIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDL 260 (610)
Q Consensus 195 llDEP--tsgLD~~~~~~i~~~L~~la~-~~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 260 (610)
.+.|| |+|+|+.....+.++++++.+ +.|. ||++.+||.+. .++|++..+.+|+++..++.++
T Consensus 270 ~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 270 AVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred hcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 23464 679999999999999999864 3575 99999999973 7899999999999999998765
No 434
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.30 E-value=4.4e-12 Score=143.55 Aligned_cols=77 Identities=23% Similarity=0.356 Sum_probs=70.1
Q ss_pred CccCHHHhhHHHHHHHHHhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 171 RGISGGEKRRVSIGVDLVHD----PAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~----p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|++++ + +++||++||+|. +...+|++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~-~-~~~vi~iTH~~~--~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLS-E-RHQVLCVTHLPQ--VAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEEChHH--HHHhcCeEEE
Confidence 57899999999999999985 69999999999999999999999999996 3 799999999986 4579999999
Q ss_pred eeCCe
Q 044112 247 LSKGT 251 (610)
Q Consensus 247 L~~G~ 251 (610)
|++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
No 435
>PRK10869 recombination and repair protein; Provisional
Probab=99.27 E-value=1.1e-11 Score=139.54 Aligned_cols=76 Identities=24% Similarity=0.444 Sum_probs=69.4
Q ss_pred CccCHHHhhHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 171 RGISGGEKRRVSIGVDLVH----DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|++++ + +.+||++||+|. +..++|+.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~-~-~~qvi~iTH~~~--~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLG-E-STQVMCVTHLPQ--VAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHH--HHHhCCEEEE
Confidence 4589999999999999997 589999999999999999999999999996 3 689999999995 5689999999
Q ss_pred eeCC
Q 044112 247 LSKG 250 (610)
Q Consensus 247 L~~G 250 (610)
+.++
T Consensus 505 v~k~ 508 (553)
T PRK10869 505 VSKE 508 (553)
T ss_pred Eecc
Confidence 9874
No 436
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.27 E-value=4.9e-12 Score=147.14 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=63.6
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS-LLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
+.+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. +++.+.+ .|.++|++||+++. ....+|+..+. +
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~el-~~~~~~~~~v~-~ 464 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYKEL-KALMYNREGVE-N 464 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChHHH-HHHHhcCCCeE-E
Confidence 57999999999999988 8999999999999999999988864 6777754 58999999999753 33344544433 4
Q ss_pred CeEEEE
Q 044112 250 GTVVHH 255 (610)
Q Consensus 250 G~iv~~ 255 (610)
+.+.++
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 555553
No 437
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.27 E-value=3.4e-12 Score=129.31 Aligned_cols=174 Identities=22% Similarity=0.268 Sum_probs=105.6
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE--CCE-eCChhcccce---EEEEccCCCCCCCCCHHHHH
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV--NEQ-PMNITQFRRI---SGYVTQDEVLFPLLTVKETL 129 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~--~g~-~~~~~~~~~~---~~yv~Q~~~l~~~lTv~E~l 129 (610)
..+..||.++|+||+|+|||||++.|++.......+..+.+ -++ ..+..++.+. +-.+.+-+. +..+.+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 46789999999999999999999999998754311122221 222 1222222222 222222222 111111
Q ss_pred H-------HHHHhcC-CCC----HHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH--------hhHHHHHHHHHh
Q 044112 130 M-------YSARLRL-HVG----LNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE--------KRRVSIGVDLVH 189 (610)
Q Consensus 130 ~-------~~~~~~~-~~~----~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--------rqRv~ia~aL~~ 189 (610)
. .+..++. +.. -++ -.+..+.. ++. +.+.++.+|||| +||+++|+++..
T Consensus 86 ~~~~~~~~~a~~~~~~G~~vll~iDe-i~r~a~a~---------~ev-~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~ 154 (249)
T cd01128 86 QVAEMVLEKAKRLVEHGKDVVILLDS-ITRLARAY---------NTV-VPPSGKILSGGVDANALHKPKRFFGAARNIEE 154 (249)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEC-HHHhhhhh---------hhc-cccCCCCCCCCcChhhhhhhHHHHHHhcCCCC
Confidence 1 1111100 000 000 01111111 222 234456789999 999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 190 DPAVLLIDEPTSGLDSASALN-VASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~-i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
+++|.+| ||+.+|+.+... ++ +.++. ..+.|.|+.+|+.. ....+|.|.+|+.|++
T Consensus 155 ~gsIt~l--~T~~~d~~~~~~~~i--~~~~~-~~~~~~ivls~~la--~~~~~paI~vl~s~sr 211 (249)
T cd01128 155 GGSLTII--ATALVDTGSRMDDVI--FEEFK-GTGNMELVLDRRLA--ERRIFPAIDILKSGTR 211 (249)
T ss_pred CCceEEe--eeheecCCCcccchH--HHHHh-cCCCcEEEEchHHh--hCCCCCeEEEcCCCCc
Confidence 9999999 999999655544 54 45543 25789999999986 3689999999999987
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.26 E-value=4e-11 Score=120.56 Aligned_cols=151 Identities=19% Similarity=0.250 Sum_probs=92.6
Q ss_pred EEEeCceEEEEECCCCCcHHHH-HHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 044112 56 CEARPGEIMAIVGPSGAGKTTL-LDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR 134 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTL-L~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~ 134 (610)
+-+++|++++|.|||||||||| ++.+++..+++ + .+.|+..+ .|..+.+.....
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~-----------------~~~yi~~e------~~~~~~~~~~~~ 73 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNG--Y-----------------SVSYVSTQ------LTTTEFIKQMMS 73 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCC--C-----------------cEEEEeCC------CCHHHHHHHHHH
Confidence 3589999999999999999999 79999875432 1 13444422 255555555443
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH----hCCCEEEEeCCCCCC----CHH
Q 044112 135 LRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV----HDPAVLLIDEPTSGL----DSA 206 (610)
Q Consensus 135 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgL----D~~ 206 (610)
+... +++.... +.-...+ + ...+|+++.++-.+.+.+- .+|+++++||||+++ |+.
T Consensus 74 ~g~~---------~~~~~~~-~~l~~~~--~----~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 74 LGYD---------INKKLIS-GKLLYIP--V----YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred hCCc---------hHHHhhc-CcEEEEE--e----cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 3211 1111111 1000011 1 0246666655544444333 369999999999999 888
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcHH------HHHhcceEEEee
Q 044112 207 SALNVASLLKYMAVKQGKTIVLTIHQPGFR------ILELFDQILLLS 248 (610)
Q Consensus 207 ~~~~i~~~L~~la~~~g~tvi~~~H~~~~~------i~~~~D~v~~L~ 248 (610)
....+.+.++++++ .|.|+++++|+.... +..++|-++.|+
T Consensus 138 ~~~~l~~~l~~l~~-~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISS-LNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 88899999999875 477777766543210 134567777776
No 439
>PRK15066 inner membrane transport permease; Provisional
Probab=99.26 E-value=6.2e-09 Score=106.39 Aligned_cols=243 Identities=12% Similarity=0.136 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHHHHHHhhcCCCCccccchhHH--HHHHHHHHHHHHHHHHh-hHHH
Q 044112 331 FKEVIILVQRFSSNIRRTKQL-FAARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQ--IGFFAFSLTFLLSSTTE-GLPI 406 (610)
Q Consensus 331 ~~q~~~l~~R~~~~~~Rd~~~-~~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~--~g~lff~~~~~~~~~~~-~i~~ 406 (610)
|+-++.+.+|..+...||+.. +..-+++.++..+++|.++-....+....+...- .|.+.+.. +..++. +...
T Consensus 7 ~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~---~~~~~~~~~~~ 83 (257)
T PRK15066 7 WIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSV---ITNSYSNVASS 83 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 667889999999999999854 4445555556666666654211111001111111 12211111 112222 2222
Q ss_pred HHHHhHH-HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044112 407 YLEERKI-LMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACF 485 (610)
Q Consensus 407 ~~~er~v-~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i 485 (610)
+.++|.. ..++-...--++..+.+++++...-..++..++...+.+...|.+.. ....++...++..+.....+.++
T Consensus 84 i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~ 161 (257)
T PRK15066 84 FFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLIN 161 (257)
T ss_pred HHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333311 01111222347788999999988777666655555555544466533 22223333333333334458888
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccccccccCCccccch
Q 044112 486 SALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQALEGTCFLYG 565 (610)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~~~~c~~~G 565 (610)
|.+.++.+....+.+.++.+++..||.+.|.+++|+|++|+.+++|+.|..|++=..-+++
T Consensus 162 a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~------------------- 222 (257)
T PRK15066 162 AVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGI------------------- 222 (257)
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCC-------------------
Confidence 8888888888888999999999999999999999999999999999999999863322211
Q ss_pred HHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044112 566 DGFLAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRSY 606 (610)
Q Consensus 566 ~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~~ 606 (610)
.....|.++++++++.+++.+++...+|++.+
T Consensus 223 ---------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 223 ---------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11235788999999999999888888775543
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.26 E-value=6.6e-11 Score=132.52 Aligned_cols=136 Identities=21% Similarity=0.380 Sum_probs=103.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCCH-HHHHHHHHH------HHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhCC
Q 044112 120 FPLLTVKETLMYSARLRLHVGL-NRAKARVSE------LLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDP 191 (610)
Q Consensus 120 ~~~lTv~E~l~~~~~~~~~~~~-~~~~~~v~~------~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p 191 (610)
+..|++.|.+.|...+.+.... .-.+..+.+ .|..+||.-. .++.. ..|||||.||+-+|..+=++=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a-----~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSA-----GTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccC-----CCcChhHHHHHHHHHHhcccc
Confidence 3467888888887776543211 111122222 2344577643 33333 589999999999999998774
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHHH
Q 044112 192 --AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 192 --~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~~ 263 (610)
=+++||||+-||-+..-.++++.|+++. +.|-|+|++.||++ ..+.+|+|+-+ +.|+|+++|+++++.+
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LR-DlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLR-DLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHH-hcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 3789999999999999999999999996 56999999999985 68999999998 5689999999998763
No 441
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.24 E-value=1.2e-11 Score=123.02 Aligned_cols=64 Identities=31% Similarity=0.445 Sum_probs=54.5
Q ss_pred CCccCHHHhhHHHHHHHHHhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 170 SRGISGGEKRRVSIGVDLVHDP---AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p---~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
...+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|++.++ .+.-||+|||.|.
T Consensus 234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp~ 300 (303)
T PF13304_consen 234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSPF 300 (303)
T ss_dssp GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-GG
T ss_pred eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccch
Confidence 3567999999999999988877 89999999999999999999999998875 5789999999985
No 442
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.24 E-value=2.3e-11 Score=147.12 Aligned_cols=80 Identities=28% Similarity=0.301 Sum_probs=73.6
Q ss_pred CCCccCHHHhhHHHHHHHHHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHH
Q 044112 169 SSRGISGGEKRRVSIGVDLVH----------DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRIL 238 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~----------~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~ 238 (610)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.. .|++|+++||++.. ..
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~~~-~~ 1024 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVPEF-RE 1024 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcHHH-HH
Confidence 457999999999999999986 7999999999999999999999999999975 69999999999985 78
Q ss_pred HhcceEEEeeCC
Q 044112 239 ELFDQILLLSKG 250 (610)
Q Consensus 239 ~~~D~v~~L~~G 250 (610)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 899999999753
No 443
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.24 E-value=1.5e-11 Score=139.55 Aligned_cols=79 Identities=25% Similarity=0.399 Sum_probs=69.8
Q ss_pred CCCccCHHHhhHHHHHHHHH----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHH
Q 044112 169 SSRGISGGEKRRVSIGVDLV----------HDPAVLLIDEPT-SGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRI 237 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~----------~~p~llllDEPt-sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i 237 (610)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ .|.|||++||++. .
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~---~~~~iiiish~~~--~ 539 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL---KDTNVFVISHKDH--D 539 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC---CCCeEEEEECchh--c
Confidence 44789999999999999887 599999999998 789999999999999987 3789999999975 4
Q ss_pred HHhcceEEEeeC-CeE
Q 044112 238 LELFDQILLLSK-GTV 252 (610)
Q Consensus 238 ~~~~D~v~~L~~-G~i 252 (610)
...+|++++|.+ |+.
T Consensus 540 ~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 540 PQKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhhcEEEEEEECCe
Confidence 678999999986 543
No 444
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.23 E-value=4.4e-11 Score=119.02 Aligned_cols=135 Identities=18% Similarity=0.255 Sum_probs=89.2
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+-+|+++..++|++++|.||||+||||+++++++..--. .. |..+..+. ..++++ +.++..+...|+
T Consensus 18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la-~~------G~~vpa~~--~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMA-QM------GMDVPAKS--MRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHH-Hc------CCccCccc--cEeccc---cEEEEecCcccc
Confidence 6889999999999999999999999999999999863211 01 11111111 011111 222222222222
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC--HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS--GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSA 206 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--gGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 206 (610)
+.. ++| ..|-+|++-....+++|+++++|||.+|+|+.
T Consensus 86 ~~~----------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~ 125 (218)
T cd03286 86 IMK----------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTSTH 125 (218)
T ss_pred ccc----------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCch
Confidence 211 111 12444444444556789999999999999999
Q ss_pred HHHHHHHH-HHHHHHhCCcEEEEEecCCcH
Q 044112 207 SALNVASL-LKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 207 ~~~~i~~~-L~~la~~~g~tvi~~~H~~~~ 235 (610)
....+... ++.+.+..+.++|++||+++.
T Consensus 126 dg~~la~ail~~L~~~~~~~~i~~TH~~el 155 (218)
T cd03286 126 DGYAIAHAVLEYLVKKVKCLTLFSTHYHSL 155 (218)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 99999888 777775448999999999863
No 445
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.16 E-value=2.9e-10 Score=109.87 Aligned_cols=145 Identities=23% Similarity=0.210 Sum_probs=94.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCC-CCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCH
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM-IPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGL 141 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~-~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~ 141 (610)
++.|.||+|+|||||.--++-. .+. | +.+.|+.= ..|..+.+.....+.. ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~----------g---------~~v~~~s~------e~~~~~~~~~~~~~g~--~~ 53 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR----------G---------EPGLYVTL------EESPEELIENAESLGW--DL 53 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC----------C---------CcEEEEEC------CCCHHHHHHHHHHcCC--Ch
Confidence 3679999999999988755432 111 1 11334421 1244444444333211 11
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhh------HHHHHHHHHhCCCEEEEeCCCCCCC---HHHHHHHH
Q 044112 142 NRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKR------RVSIGVDLVHDPAVLLIDEPTSGLD---SASALNVA 212 (610)
Q Consensus 142 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD---~~~~~~i~ 212 (610)
+ -+...|+....+.. +..+|+||+| +.........+|+++++|||++.+| ......+.
T Consensus 54 -------~-~l~~~g~l~~~d~~-----~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~ 120 (187)
T cd01124 54 -------E-RLEDEGLLAIVDAD-----PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIR 120 (187)
T ss_pred -------H-HHHhcCCeEEEecC-----ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHH
Confidence 1 12233443333333 3588999998 4455555667999999999999999 88888888
Q ss_pred HHHHHHHHhCCcEEEEEecCCcH--------HHHHhcceEEEee
Q 044112 213 SLLKYMAVKQGKTIVLTIHQPGF--------RILELFDQILLLS 248 (610)
Q Consensus 213 ~~L~~la~~~g~tvi~~~H~~~~--------~i~~~~D~v~~L~ 248 (610)
+.++.+++ .|.|+|+++|+... .+..++|.++.|+
T Consensus 121 ~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 121 RLLFALKR-FGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHHHH-CCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 99988875 58999999998653 1567899999887
No 446
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.16 E-value=1.2e-10 Score=122.13 Aligned_cols=142 Identities=16% Similarity=0.170 Sum_probs=96.9
Q ss_pred eeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe-CChhcccceEEEEccCCC-CCCCCCHHHHHHH
Q 044112 54 VNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP-MNITQFRRISGYVTQDEV-LFPLLTVKETLMY 131 (610)
Q Consensus 54 vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~-~~~~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~ 131 (610)
+++.+++|+.++|.||+|||||||+++|++.+++. .|.+.++... +... .+..+.++.+... -....|.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~--~~iv~ied~~El~~~-~~~~~~l~~~~~~~~~~~~~~------ 207 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKD--ERIITIEDTREIFLP-HPNYVHLFYSKGGQGLAKVTP------ 207 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCcc--ccEEEEcCccccCCC-CCCEEEEEecCCCCCcCccCH------
Confidence 56778899999999999999999999999999875 6777775321 1101 1122232222100 0001111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 044112 132 SARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV 211 (610)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 211 (610)
.-.+..+|-.+|+++++|||.+ .+.
T Consensus 208 ------------------------------------------------~~~l~~~Lr~~pd~ii~gE~r~-------~e~ 232 (308)
T TIGR02788 208 ------------------------------------------------KDLLQSCLRMRPDRIILGELRG-------DEA 232 (308)
T ss_pred ------------------------------------------------HHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence 1123446677999999999996 355
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 212 ASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 212 ~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
++.++.+. ..+.+++.|+|..+ ..+..||+..|..|++...|.+.+..
T Consensus 233 ~~~l~a~~-~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVN-TGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHh-cCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 67777765 33456799999997 46779999999999988888877654
No 447
>PRK13695 putative NTPase; Provisional
Probab=99.13 E-value=2.8e-11 Score=116.29 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=63.5
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEP--TSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEP--tsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
..+||+|+.+..+++..+.+|+++++||| +.++| ..+.+.+.++. +.|+++|+++|+. .+...+|++..+.
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~-~~~~~~i~v~h~~--~~~~~~~~i~~~~ 149 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVL-DSEKPVIATLHRR--SVHPFVQEIKSRP 149 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHH-hCCCeEEEEECch--hhHHHHHHHhccC
Confidence 46999999999999999999999999995 44444 34566666665 4589999999984 3567899999999
Q ss_pred CCeEEEE
Q 044112 249 KGTVVHH 255 (610)
Q Consensus 249 ~G~iv~~ 255 (610)
+|+++..
T Consensus 150 ~~~i~~~ 156 (174)
T PRK13695 150 GGRVYEL 156 (174)
T ss_pred CcEEEEE
Confidence 9988655
No 448
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.09 E-value=3.1e-10 Score=106.13 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=48.2
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcH
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTS----------GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPts----------gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~ 235 (610)
..+.++.++...+.+...+|+++++|||++ +.|......+.++++.. ++.+.|+|+++|..+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA-RKGGVTVIFTLQVPSG 139 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCceEEEEEecCCc
Confidence 345566677888889999999999999994 55555566666666554 5579999999998864
No 449
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.07 E-value=8.5e-10 Score=129.75 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=59.9
Q ss_pred HhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHH---------HhcceEEEeeCCeEEEEcC
Q 044112 188 VHDPAVLLIDEPTSGL-DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRIL---------ELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 188 ~~~p~llllDEPtsgL-D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~---------~~~D~v~~L~~G~iv~~g~ 257 (610)
..+|+++++|||+.+| |+..+..+.+.++++.+ .|.+++++||+++. +. +.||+.++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~d-~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSISD-AERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHH-HhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 79999999999999865 58899999999974 43 6899999999999876664
Q ss_pred h
Q 044112 258 L 258 (610)
Q Consensus 258 ~ 258 (610)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 3
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.07 E-value=1.9e-09 Score=102.13 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=60.3
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cce
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL-FDQ 243 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~-~D~ 243 (610)
+|+.....-|.||-=---+.+ =.++--+++||||-++|.+.-+.+++..|+++++ .|.-+|+.||.|- +..+ --.
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~-rf~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSPi--LlAiP~A~ 197 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHN-RFNGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSPI--LLAIPGAE 197 (233)
T ss_pred cCCcchhhhccchHHHHHHHH-HhccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecChh--heeCCCcE
Confidence 334444678899864433333 3456789999999999999999999999999986 5899999999984 2222 235
Q ss_pred EEEeeCCe
Q 044112 244 ILLLSKGT 251 (610)
Q Consensus 244 v~~L~~G~ 251 (610)
|+-++.+.
T Consensus 198 I~~~~~~g 205 (233)
T COG3910 198 IYEISESG 205 (233)
T ss_pred EEEEecCC
Confidence 55555543
No 451
>PRK03918 chromosome segregation protein; Provisional
Probab=99.05 E-value=3.8e-10 Score=134.69 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=68.4
Q ss_pred CCCccCHHHhhH------HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 169 SSRGISGGEKRR------VSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 169 ~~~~LSgGerqR------v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
.+..|||||+++ +++|++++.+|+++++||||+|||+..+..+.+.|+.++. .+.+||++||++. +...||
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~~--~~~~~d 861 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDEE--LKDAAD 861 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCHH--HHHhCC
Confidence 567899999995 5555678899999999999999999999999999999864 4789999999974 678999
Q ss_pred eEEEeeC
Q 044112 243 QILLLSK 249 (610)
Q Consensus 243 ~v~~L~~ 249 (610)
++++|..
T Consensus 862 ~~~~l~~ 868 (880)
T PRK03918 862 YVIRVSL 868 (880)
T ss_pred eEEEEEe
Confidence 9999984
No 452
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.02 E-value=7e-10 Score=133.84 Aligned_cols=79 Identities=28% Similarity=0.282 Sum_probs=68.6
Q ss_pred CCCccCHHHhhHHHHHHHHHh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 169 SSRGISGGEKRRVSIGVDLVH--------DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~--------~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
.++.|||||+++++||++|+. +|++||+||||+|||+.+...+++.|+++.+ .|+||+++||.... ..++
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~~l-~~~i 1023 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVEAM-KERI 1023 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHHHH-HHhc
Confidence 457999999999999999996 8999999999999999999999999999975 59999999997653 4556
Q ss_pred cceEEEeeC
Q 044112 241 FDQILLLSK 249 (610)
Q Consensus 241 ~D~v~~L~~ 249 (610)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 666666654
No 453
>PRK01156 chromosome segregation protein; Provisional
Probab=99.02 E-value=8.3e-10 Score=131.98 Aligned_cols=78 Identities=26% Similarity=0.425 Sum_probs=67.7
Q ss_pred CCCccCHHHhhHHHH------HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-C-cEEEEEecCCcHHHHHh
Q 044112 169 SSRGISGGEKRRVSI------GVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQ-G-KTIVLTIHQPGFRILEL 240 (610)
Q Consensus 169 ~~~~LSgGerqRv~i------a~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~-g-~tvi~~~H~~~~~i~~~ 240 (610)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.++++...+.. | .+||++||++. ..+.
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467999999999975 489999999999999999999999999999998644333 3 48999999986 4589
Q ss_pred cceEEEee
Q 044112 241 FDQILLLS 248 (610)
Q Consensus 241 ~D~v~~L~ 248 (610)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 454
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.99 E-value=9.6e-08 Score=97.29 Aligned_cols=169 Identities=17% Similarity=0.256 Sum_probs=123.8
Q ss_pred HhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 044112 410 ERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVACFS-AL 488 (610)
Q Consensus 410 er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~i~-~~ 488 (610)
++..+.|=..+...+ ..+++++.+.......+...+...+..+..|. .....+..+...+.+..+...++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444433 55677777777666666666666666666662 3334456666666666777778888666 36
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccccccccCCccccchHHH
Q 044112 489 VPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQALEGTCFLYGDGF 568 (610)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~~~~c~~~G~~~ 568 (610)
.++.+.+..+...+..++..++|.+.|.+.+|.|++|+.++.|.+|+.+++-.....+...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~~------------------- 254 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWRN------------------- 254 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCch-------------------
Confidence 6667788888888999999999999999999999999999999999999986665544321
Q ss_pred HhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 044112 569 LAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRSYR 607 (610)
Q Consensus 569 L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~~~ 607 (610)
.+.|.++++++++.+++.+++...++++.+.
T Consensus 255 --------~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 255 --------DGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1278899999999999999999998877653
No 455
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.99 E-value=2.4e-09 Score=115.97 Aligned_cols=154 Identities=19% Similarity=0.199 Sum_probs=108.5
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+++++ +.+.+|+.++|+|+||+|||||+++|+|..+++ .|.|.+.|+.. .+|.|.
T Consensus 145 raID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~--~gvI~~iGerg---------------------~ev~e~ 200 (432)
T PRK06793 145 KSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKAD--INVISLVGERG---------------------REVKDF 200 (432)
T ss_pred EEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCC--eEEEEeCCCCc---------------------ccHHHH
Confidence 578885 999999999999999999999999999998765 67666655431 356665
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH-------hCCCEEEEeCCCC
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV-------HDPAVLLIDEPTS 201 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~-------~~p~llllDEPts 201 (610)
+..... .-|+.+. ..+ .....-|.|+|+|+..+.+.+ .++-++++||||+
T Consensus 201 ~~~~l~-------------------~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 201 IRKELG-------------------EEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHhh-------------------hccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 442211 1122110 011 123578999999999998887 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 202 GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 202 gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
..|+. .++-..+.+... .|.+..+.+|-+ .++ +|.-...+|.+...+.
T Consensus 258 ~a~A~--reisl~~~e~p~-~G~~~~~~s~l~--~L~---ERag~~~~GSiT~~~t 305 (432)
T PRK06793 258 FADAR--RSVDIAVKELPI-GGKTLLMESYMK--KLL---ERSGKTQKGSITGIYT 305 (432)
T ss_pred HHHHH--HHHHHHhcCCCC-CCeeeeeeccch--hHH---HHhccCCCcceEEEEE
Confidence 99996 555556666653 488888888843 244 4444457888765544
No 456
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=1.4e-09 Score=134.33 Aligned_cols=71 Identities=21% Similarity=0.328 Sum_probs=62.6
Q ss_pred CCccCHHHhh------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hCCcEEEEEecCCcHHHHH
Q 044112 170 SRGISGGEKR------RVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAV----KQGKTIVLTIHQPGFRILE 239 (610)
Q Consensus 170 ~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~----~~g~tvi~~~H~~~~~i~~ 239 (610)
+..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.+||++||++.. +..
T Consensus 1197 ~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~-~~~ 1275 (1311)
T TIGR00606 1197 RGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF-VEL 1275 (1311)
T ss_pred CCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHH-HHH
Confidence 3589999999 99999999999999999999999999999999999988732 247899999999974 666
Q ss_pred hc
Q 044112 240 LF 241 (610)
Q Consensus 240 ~~ 241 (610)
++
T Consensus 1276 ~~ 1277 (1311)
T TIGR00606 1276 LG 1277 (1311)
T ss_pred Hh
Confidence 64
No 457
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.94 E-value=5.8e-09 Score=105.49 Aligned_cols=138 Identities=23% Similarity=0.342 Sum_probs=89.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG 140 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~ 140 (610)
|++..|.||+|+|||||.-.++=-.. +|.= +.|.... ..-...+-|+.=|+ +
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va----~G~~-~~g~~~~-~~~~~~Vlyi~~Ed----------------------~ 52 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMA----LGKN-LFGGGLK-VTEPGRVVYLSAED----------------------P 52 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHh----cCcc-ccCCccc-cCCCceEEEEECCC----------------------C
Confidence 67899999999999999988863321 1211 1110000 00122345554322 1
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHH----------------HHHhCCCEEEEeCCCC---
Q 044112 141 LNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGV----------------DLVHDPAVLLIDEPTS--- 201 (610)
Q Consensus 141 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~----------------aL~~~p~llllDEPts--- 201 (610)
.++..+|+..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 53 ~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~ 124 (239)
T cd01125 53 REEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFH 124 (239)
T ss_pred HHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhC
Confidence 2234456666777676655444332 2255666665543 335799999999 765
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 202 ---GLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 202 ---gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
.+|+.....+++.|++++++.|.+|++++|...
T Consensus 125 ~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 125 GVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 479999999999999999888999999999874
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.88 E-value=3.9e-08 Score=99.09 Aligned_cols=162 Identities=21% Similarity=0.257 Sum_probs=97.4
Q ss_pred cccce-eEEEeCceEEEEECCCCCcHHHHHHHHH-CCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 50 ILKNV-NCEARPGEIMAIVGPSGAGKTTLLDILA-GMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 50 iL~~v-s~~i~~Ge~~ailG~nGaGKSTLL~~L~-g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
-|+.+ .+-+++|.++.|.|++|+|||||...++ +..+. .+ .+.|+..+. +..+
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~----------------~~~y~~~e~------~~~~ 67 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ---GK----------------KVYVITTEN------TSKS 67 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC---CC----------------EEEEEEcCC------CHHH
Confidence 45554 5679999999999999999999999885 22211 11 234444421 3333
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHh--CCCEEEEeCCCCC---
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVH--DPAVLLIDEPTSG--- 202 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~--~p~llllDEPtsg--- 202 (610)
.+.-...+.. .. ++.+. -|.....+..+. .....|.++++.+.....++. +|+++++||||+.
T Consensus 68 ~~~~~~~~g~--~~-------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 68 YLKQMESVKI--DI-------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred HHHHHHHCCC--Ch-------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 3322222111 10 00000 011111111110 112456788999999999998 9999999999964
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcH------HHHHhcceEEEeeC
Q 044112 203 LDSASALNVASLLKYMAVKQGKTIVLTIHQPGF------RILELFDQILLLSK 249 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~------~i~~~~D~v~~L~~ 249 (610)
.|.....++++.++.+++ .|.|+++++|+... .+..++|-++.|+.
T Consensus 136 ~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 136 AEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred CCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 455555666666776664 58899999998753 14556777777763
No 459
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.87 E-value=2.5e-09 Score=131.03 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=67.3
Q ss_pred CCCccCHHHhhHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 169 SSRGISGGEKRRVSIGVDLV----HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
.+..||||||+|++||++++ .+|++++|||||+|||+.+...+.++|+++++ +.+||++||++. ....||++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~~--~~~~~d~~ 1161 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNKG--TMEVADQL 1161 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcChh--HHHHhhhH
Confidence 55799999999999999985 67799999999999999999999999999863 478999999987 35789999
Q ss_pred EEee
Q 044112 245 LLLS 248 (610)
Q Consensus 245 ~~L~ 248 (610)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 8765
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.87 E-value=1.1e-08 Score=100.53 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=42.4
Q ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 182 SIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 182 ~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+++++|..+|+++++|||. |..+...++ +.+. .|..++.|+|.++. .+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~-~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAE-TGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHH-cCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4678888999999999996 555433333 3443 58899999999873 57789987664
No 461
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.83 E-value=1.1e-08 Score=112.30 Aligned_cols=151 Identities=21% Similarity=0.257 Sum_probs=95.5
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.++++.+..++.|++++++||||+||||++..|++.+... .|. +.++++.+|. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~--~G~--------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMR--HGA--------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHh--cCC--------------CeEEEEeCCc---cchhHHHH
Confidence 3566777778899999999999999999999999986432 231 2478888876 45789999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhh-HHHHHHHHHhCC-----CEEEEeCCCCC
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKR-RVSIGVDLVHDP-----AVLLIDEPTSG 202 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerq-Rv~ia~aL~~~p-----~llllDEPtsg 202 (610)
|.+.++... .+....+...+......++.+.....|. +...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 305 Lr~~AeilG-Vpv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 305 LRIYGKILG-VPVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred HHHHHHHhC-CCeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 999877642 1111122233445556677766555553 33323332 234444555555 68999999887
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEec
Q 044112 203 LDSASALNVASLLKYMAVKQGKTIVLTIH 231 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~~g~tvi~~~H 231 (610)
..+.+.++.... .+.+=++.|+
T Consensus 379 ------~~l~~i~~~f~~-~~~~g~IlTK 400 (484)
T PRK06995 379 ------DTLNEVVQAYRG-PGLAGCILTK 400 (484)
T ss_pred ------HHHHHHHHHhcc-CCCCEEEEeC
Confidence 334445555432 3444444454
No 462
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.83 E-value=2.8e-09 Score=115.23 Aligned_cols=50 Identities=22% Similarity=0.355 Sum_probs=45.2
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee-EEEECCEeCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG-SVLVNEQPMN 102 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G-~I~~~g~~~~ 102 (610)
.+|++||+++++||+++|+|||||||||||+ +|+..+. +| +|.++|+++.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~--sGg~I~ldg~~~~ 70 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFS--EGYEFFLDATHSF 70 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCC--CCCEEEECCEECC
Confidence 6899999999999999999999999999999 6777664 56 8999999874
No 463
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.79 E-value=2e-07 Score=83.82 Aligned_cols=119 Identities=29% Similarity=0.390 Sum_probs=78.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV 139 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~ 139 (610)
++..+.|.||+|+||||+++.|+....... .+-+.++......... ....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~------------------~~~~----------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVL------------------DQLL----------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCH------------------HHHH-----------
Confidence 367899999999999999999999986531 1344444433211000 0000
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH-----H
Q 044112 140 GLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS-----L 214 (610)
Q Consensus 140 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~-----~ 214 (610)
... .........+++..+..++++--.+|+++++||+..-.+......... .
T Consensus 51 ------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 ------------------LII-----VGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred ------------------hhh-----hhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 000 001113567778888778877777789999999999999988887764 1
Q ss_pred HHHHHHhCCcEEEEEec
Q 044112 215 LKYMAVKQGKTIVLTIH 231 (610)
Q Consensus 215 L~~la~~~g~tvi~~~H 231 (610)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22223345789999998
No 464
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.78 E-value=9.2e-09 Score=126.22 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCCccCHHHhhHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 169 SSRGISGGEKRRVSIGVDLVH----DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
.+..||||||++++||++++. +|++++||||++|||+.....+.++|+++++ +..+|++||++. +...||++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~~--~~~~~d~~ 1146 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRSP--MIEYADRA 1146 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcHH--HHHhccee
Confidence 456899999999999999985 6799999999999999999999999999863 478999999985 56899999
Q ss_pred EEeeC
Q 044112 245 LLLSK 249 (610)
Q Consensus 245 ~~L~~ 249 (610)
+.+..
T Consensus 1147 ~~~~~ 1151 (1164)
T TIGR02169 1147 IGVTM 1151 (1164)
T ss_pred EeEEE
Confidence 88764
No 465
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.4e-08 Score=121.43 Aligned_cols=78 Identities=31% Similarity=0.461 Sum_probs=67.2
Q ss_pred CCccCHHHhh------HHHHHHHHHhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEEecCCcHH
Q 044112 170 SRGISGGEKR------RVSIGVDLVHD-----P-AVLLIDEPTSGLDSASALNVASLLKYMAVKQG-KTIVLTIHQPGFR 236 (610)
Q Consensus 170 ~~~LSgGerq------Rv~ia~aL~~~-----p-~llllDEPtsgLD~~~~~~i~~~L~~la~~~g-~tvi~~~H~~~~~ 236 (610)
+..||||||+ |++++++++.+ | +++++||||++||+.....+.++|+++++ .| .+||++||++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~~-- 855 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDDE-- 855 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECChH--
Confidence 5699999999 89999888864 3 67999999999999999999999999874 35 48999999986
Q ss_pred HHHhcceEEEeeCC
Q 044112 237 ILELFDQILLLSKG 250 (610)
Q Consensus 237 i~~~~D~v~~L~~G 250 (610)
....+|+++.+.+.
T Consensus 856 ~~~~ad~~~~~~~~ 869 (880)
T PRK02224 856 LVGAADDLVRVEKD 869 (880)
T ss_pred HHHhcCeeEEeecC
Confidence 35789999999753
No 466
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.76 E-value=1.9e-07 Score=87.81 Aligned_cols=130 Identities=11% Similarity=-0.021 Sum_probs=95.7
Q ss_pred HHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccch--HHHHHHHHHHHHHHHHHHHHHHHH
Q 044112 408 LEERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREM--DGFLYFSFVVWLVVLTSNSFVACF 485 (610)
Q Consensus 408 ~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~--~~f~~f~~~~~l~~~~~~~~~~~i 485 (610)
-+|+..+.|-+..-. +++.|+++|++...-..++..++..++.+++ |.+... ...+.+++...+.......++..+
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~ 92 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMAM 92 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888887777 7889999999999999998887777777543 877653 222333333334444555566666
Q ss_pred HhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHH
Q 044112 486 SALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFM 540 (610)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~ 540 (610)
+...++.+. ......+..|+++.||.+.|.+++|.|++|+.+++|++|+.|++=
T Consensus 93 a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 93 ALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 555565543 334566778888999999999999999999999999999999874
No 467
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.71 E-value=1.4e-07 Score=111.64 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=54.0
Q ss_pred HHHHHHhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH--hcceEEEeeCCeEE
Q 044112 183 IGVDLVHDPAVLLIDEPTSGL-DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE--LFDQILLLSKGTVV 253 (610)
Q Consensus 183 ia~aL~~~p~llllDEPtsgL-D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~--~~D~v~~L~~G~iv 253 (610)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+ .|.+++++||+++. +.+ .++.++-....++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 567788999999999999999 79999999999999875 58899999999974 554 33444333444444
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.67 E-value=5.4e-08 Score=94.64 Aligned_cols=84 Identities=20% Similarity=0.188 Sum_probs=62.1
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCC--CCCCCCCHHH
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDE--VLFPLLTVKE 127 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~--~l~~~lTv~E 127 (610)
..+=+.+.+++|+.++|+||||||||||+++|+|+++++ .|.|.+++..-.....+..++++.|.+ ...+..|+.|
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 445566778999999999999999999999999999876 899999775321112234566666544 3466788888
Q ss_pred HHHHHHHh
Q 044112 128 TLMYSARL 135 (610)
Q Consensus 128 ~l~~~~~~ 135 (610)
.+..+.+.
T Consensus 92 ~l~~~lR~ 99 (186)
T cd01130 92 LLRSALRM 99 (186)
T ss_pred HHHHHhcc
Confidence 88776553
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.67 E-value=5.5e-09 Score=116.28 Aligned_cols=167 Identities=19% Similarity=0.167 Sum_probs=103.3
Q ss_pred ccccce-eEEEeCceEEEEECCCCCcHHHHHHHH--HCCCCCCCceeEEEECCEeCChhccc---ceEEEEccCCCCCCC
Q 044112 49 CILKNV-NCEARPGEIMAIVGPSGAGKTTLLDIL--AGMIPLRRVSGSVLVNEQPMNITQFR---RISGYVTQDEVLFPL 122 (610)
Q Consensus 49 ~iL~~v-s~~i~~Ge~~ailG~nGaGKSTLL~~L--~g~~~~~~~~G~I~~~g~~~~~~~~~---~~~~yv~Q~~~l~~~ 122 (610)
.-|+.+ .+=+++|..+.|.||+|||||||..-. .|..+.+ +.-+++...+- ..+++ +..|+-.++..--..
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g--e~~lyvs~eE~-~~~l~~~~~~~G~~~~~~~~~g~ 84 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD--EPGVFVTFEES-PQDIIKNARSFGWDLQKLVDEGK 84 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEecC-HHHHHHHHHHcCCCHHHHhhcCc
Confidence 346664 668999999999999999999999876 4554323 34455554432 22221 233443332110000
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHH--HHHHhCCCEEEEeCCC
Q 044112 123 LTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIG--VDLVHDPAVLLIDEPT 200 (610)
Q Consensus 123 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia--~aL~~~p~llllDEPt 200 (610)
+-+ +. ..+. .....+++.+++.+..+... +.+|+|++|||.|+ .++..+|+..
T Consensus 85 l~~---------~~-~~~~----~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~------ 139 (484)
T TIGR02655 85 LFI---------LD-ASPD----PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV------ 139 (484)
T ss_pred eEE---------Ee-cCch----hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch------
Confidence 000 00 0000 01112345566666666554 58999999999999 6666665543
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH-------H-HHhcceEEEee
Q 044112 201 SGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFR-------I-LELFDQILLLS 248 (610)
Q Consensus 201 sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~-------i-~~~~D~v~~L~ 248 (610)
...+..+.++++.++ +.|+|+|+++|+++.. + ..++|.|+.|+
T Consensus 140 ----~~~r~~l~~Li~~L~-~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 ----SVVRREIFRLVARLK-QIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred ----HHHHHHHHHHHHHHH-HCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 467788899998886 4699999999987520 1 45789999987
No 470
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.64 E-value=3.1e-08 Score=99.34 Aligned_cols=163 Identities=21% Similarity=0.169 Sum_probs=83.5
Q ss_pred cccce-eEEEeCceEEEEECCCCCcHHHHHHHHH--CCCCCCCceeEEEECCEeCChhc---ccceEEEEccCCCCCCCC
Q 044112 50 ILKNV-NCEARPGEIMAIVGPSGAGKTTLLDILA--GMIPLRRVSGSVLVNEQPMNITQ---FRRISGYVTQDEVLFPLL 123 (610)
Q Consensus 50 iL~~v-s~~i~~Ge~~ailG~nGaGKSTLL~~L~--g~~~~~~~~G~I~~~g~~~~~~~---~~~~~~yv~Q~~~l~~~l 123 (610)
-|+.+ .+-+++|++++|.||+|+|||||...++ +.. .+ ++-+++..... ..+ ..+..++.+|+....+.+
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g--~~~~~is~e~~-~~~i~~~~~~~g~~~~~~~~~~~l 83 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DG--DPVIYVTTEES-RESIIRQAAQFGMDFEKAIEEGKL 83 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh-cC--CeEEEEEccCC-HHHHHHHHHHhCCCHHHHhhcCCE
Confidence 46663 5679999999999999999999988655 433 23 44566655322 111 122344444432211222
Q ss_pred CHHHHHHHHH--Hhc-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCC
Q 044112 124 TVKETLMYSA--RLR-LHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPT 200 (610)
Q Consensus 124 Tv~E~l~~~~--~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt 200 (610)
.+.|.+.... ... ...+.++..+++.++++..|+ +|+++++|.|+
T Consensus 84 ~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------------------~~~~vvIDsl~ 131 (229)
T TIGR03881 84 VIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGY--------------------------------GHARLVIDSMS 131 (229)
T ss_pred EEEEccccccccccccccCCHHHHHHHHHHHHHhhcc--------------------------------CceEEEecCch
Confidence 2211110000 000 001122223333333333322 23444444443
Q ss_pred CCC--CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcH-------HHHHhcceEEEee
Q 044112 201 SGL--DSASALNVASLLKYMAVKQGKTIVLTIHQPGF-------RILELFDQILLLS 248 (610)
Q Consensus 201 sgL--D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~ 248 (610)
.=+ ++....++...|++.+++.|+|+|+++|.... .+..++|.|+.|+
T Consensus 132 ~l~~~~~~~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 132 AFWLDKPAMARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred hhhccChHHHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 321 22334555566666666789999999995431 2445788888887
No 471
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.61 E-value=4.8e-08 Score=105.95 Aligned_cols=169 Identities=17% Similarity=0.180 Sum_probs=109.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEEECCEeCCh---h------cccceEEEEccCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVLVNEQPMNI---T------QFRRISGYVTQDEV 118 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~~~g~~~~~---~------~~~~~~~yv~Q~~~ 118 (610)
.+++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .+-|.|-.+|.++.. . ..+..+++++|++.
T Consensus 144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~s 222 (434)
T PRK07196 144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADES 222 (434)
T ss_pred eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCCC
Confidence 699999 999999999999999999999999999998765 122555555555421 1 12457899999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCE
Q 044112 119 LFPLLTVKETLMYSARLRLHVGLN-----RAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAV 193 (610)
Q Consensus 119 l~~~lTv~E~l~~~~~~~~~~~~~-----~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~l 193 (610)
.+..+++.|++...+.......++ +.-.+..++.+++++
T Consensus 223 ~~~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl------------------------------------ 266 (434)
T PRK07196 223 PLMRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIAL------------------------------------ 266 (434)
T ss_pred hhhhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHH------------------------------------
Confidence 999999999998877643110000 000111112222111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHHhC---CcEEEEEecCCcHHHH-HhcceEEEeeCCeEEEE
Q 044112 194 LLIDEP--TSGLDSASALNVASLLKYMAVKQ---GKTIVLTIHQPGFRIL-ELFDQILLLSKGTVVHH 255 (610)
Q Consensus 194 lllDEP--tsgLD~~~~~~i~~~L~~la~~~---g~tvi~~~H~~~~~i~-~~~D~v~~L~~G~iv~~ 255 (610)
.+.|| +.|-.+..-..+-+++.+..+.. -.|.+-+..-+..++- -.+|.+.-+-+|+++..
T Consensus 267 -~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs 333 (434)
T PRK07196 267 -SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS 333 (434)
T ss_pred -hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence 22344 33777777777888887753222 2466666654433322 35677788889999865
No 472
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.58 E-value=8.3e-08 Score=102.97 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=55.4
Q ss_pred CccCHHHhhHHHHHHHHHh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 171 RGISGGEKRRVSIGVDLVH---------DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~---------~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
..+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |.+|++|+|+++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecChh
Confidence 4789999999999999999 99999999999999999999999999753 679999999875
No 473
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.56 E-value=2.8e-07 Score=98.26 Aligned_cols=125 Identities=26% Similarity=0.441 Sum_probs=77.4
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL 137 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~ 137 (610)
.+++.++.|.||+||||||+|+.|.+.++.. ..|.|...+.++... .......+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~-~~~~i~tiEdp~E~~-~~~~~~~i~q~e-------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKN-AAGHIITIEDPIEYV-HRNKRSLINQRE-------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcC-CCCEEEEEcCChhhh-ccCccceEEccc--------------------
Confidence 3578899999999999999999999876431 245655544332100 000001111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044112 138 HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKY 217 (610)
Q Consensus 138 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~ 217 (610)
.|.. ..+ -.-.++.+|-.+|+++++||+. |+.++...++
T Consensus 177 -----------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---- 215 (343)
T TIGR01420 177 -----------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT---- 215 (343)
T ss_pred -----------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----
Confidence 0000 000 1123566788899999999997 8887765444
Q ss_pred HHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 218 MAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 218 la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+ ..|.+|+.|+|..+ .....+|++-|-
T Consensus 216 aa-~tGh~v~~T~Ha~~--~~~~~~Rl~~~~ 243 (343)
T TIGR01420 216 AA-ETGHLVFGTLHTNS--AAQTIERIIDVF 243 (343)
T ss_pred HH-HcCCcEEEEEcCCC--HHHHHHHHHHhc
Confidence 23 45899999999986 356778876553
No 474
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.54 E-value=1.6e-07 Score=111.01 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=84.2
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.|=+|+++. +.+.++.|.|||++||||+||.++-..- +.+.-+|||-+..- +++.+
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i-------------------lAq~G~~VPa~~a~---i~~~d- 651 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL-------------------LAQIGSFVPAESAR---IGIVD- 651 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH-------------------HHhcCCceeccceE---ecccC-
Confidence 466778877 6778999999999999999999875420 01111233322111 01111
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH--hCCCEEEEeCC---CCCC
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV--HDPAVLLIDEP---TSGL 203 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~llllDEP---tsgL 203 (610)
++..++|-. |. ..++.|-=+.....++..|- ++++++++||| |+.+
T Consensus 652 ---------------------~I~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~ 702 (854)
T PRK05399 652 ---------------------RIFTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTY 702 (854)
T ss_pred ---------------------eeeeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcc
Confidence 111111211 11 11356665555555555554 48999999999 8888
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 204 DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 204 D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
|..+ ....+++.+.+..|.+++++||.. ++.+++++
T Consensus 703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 8544 345566666654468999999995 47777775
No 475
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.52 E-value=2.1e-07 Score=101.13 Aligned_cols=86 Identities=14% Similarity=0.186 Sum_probs=66.1
Q ss_pred CCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeE
Q 044112 14 KNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGS 93 (610)
Q Consensus 14 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~ 93 (610)
.+...++.++++..+. ... .+++.++ .+.+||.++|+||||+||||||++|+++.+++ .|.
T Consensus 135 ~~p~~~~r~~v~~~l~---------------TGi-~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd--~gv 195 (450)
T PRK06002 135 TAPPAMTRARVETGLR---------------TGV-RVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFD--TVV 195 (450)
T ss_pred CCCCCeEeecceEEcC---------------CCc-EEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCC--eee
Confidence 3444577778777773 223 6888886 89999999999999999999999999998876 898
Q ss_pred EEECC---EeCCh-------hcccceEEEEccCCC
Q 044112 94 VLVNE---QPMNI-------TQFRRISGYVTQDEV 118 (610)
Q Consensus 94 I~~~g---~~~~~-------~~~~~~~~yv~Q~~~ 118 (610)
|.+.| +++.. ...++.+++|+|.+.
T Consensus 196 v~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 196 IALVGERGREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred eeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 88864 44421 123467999999875
No 476
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.52 E-value=6.8e-07 Score=97.72 Aligned_cols=174 Identities=17% Similarity=0.218 Sum_probs=108.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-----------hcccceEEEEccCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-----------TQFRRISGYVTQDE 117 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-----------~~~~~~~~yv~Q~~ 117 (610)
.+++++ +.+.+||.++|+|+||+|||||+++|+|..+++ .|.+...|+.-.. ..+++.+.++.+.+
T Consensus 152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~--~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEAD--VNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCC--EEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 689999 999999999999999999999999999998775 6776665554321 11334444444433
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH-HHhhHHHHHHHHHhCCCEEEE
Q 044112 118 VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG-GEKRRVSIGVDLVHDPAVLLI 196 (610)
Q Consensus 118 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~ia~aL~~~p~llll 196 (610)
. ++.+-..-+ . .--.+.+.+...|-.- .+ ...+++- -|-+| ++. +.+
T Consensus 229 ~-----~p~~r~~~~-~---------~a~t~AE~frd~G~~V----ll---~~DslTr~A~A~R-----Eis-----l~~ 276 (440)
T TIGR01026 229 Q-----SPLLRLKGA-Y---------VATAIAEYFRDQGKDV----LL---LMDSVTRFAMAQR-----EIG-----LAA 276 (440)
T ss_pred C-----CHHHHHHHH-H---------HHHHHHHHHHHCCCCE----EE---EEeChHHHHHHHH-----HHH-----Hhc
Confidence 2 121111100 0 0011222222223211 00 0011211 01111 111 345
Q ss_pred eCC--CCCCCHHHHHHHHHHHHHHHHhCCc-------EEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHH
Q 044112 197 DEP--TSGLDSASALNVASLLKYMAVKQGK-------TIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 197 DEP--tsgLD~~~~~~i~~~L~~la~~~g~-------tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
.|| +.|+|+.....+.+++.+... .+. ||++..||.+. ..+|++.-+.+|+++.+...++.
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 675 459999999999999999864 467 89999999853 57899999999999999876653
No 477
>PRK14079 recF recombination protein F; Provisional
Probab=98.47 E-value=2.8e-07 Score=98.48 Aligned_cols=77 Identities=26% Similarity=0.320 Sum_probs=63.5
Q ss_pred CccCHHHhhHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 171 RGISGGEKRRVSIGVDLV---------HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
.-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+++.+ +.+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~----~q~~it~t~~~-----~~~ 332 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL----PQAIVAGTEAP-----PGA 332 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC----CcEEEEcCCCC-----CCC
Confidence 468999999999999999 899999999999999999999999988643 23555555443 468
Q ss_pred ceEEEeeCCeEEEEc
Q 044112 242 DQILLLSKGTVVHHG 256 (610)
Q Consensus 242 D~v~~L~~G~iv~~g 256 (610)
|+++.+.+|++.-..
T Consensus 333 ~~~~~~~~~~~~~~~ 347 (349)
T PRK14079 333 ALTLRIEAGVFTPEA 347 (349)
T ss_pred ceEEEEeccEecCCC
Confidence 999999998875443
No 478
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.44 E-value=5.5e-07 Score=107.83 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=69.1
Q ss_pred CCCccCHHHhhHHHHHHHHH------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 169 SSRGISGGEKRRVSIGVDLV------HD--PAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~------~~--p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
.+..|||||+-.++||.+|+ .+ -+.+||||||..||+.+...+++.|.++.. .+.+|+++||+.. +.+.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~-~~~qiiIISH~ee--l~e~ 888 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS-DGRQIIIISHVEE--LKER 888 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeChHH--HHHh
Confidence 66899999999988887764 35 589999999999999999999999999975 4899999999974 6789
Q ss_pred cceEEEeeC
Q 044112 241 FDQILLLSK 249 (610)
Q Consensus 241 ~D~v~~L~~ 249 (610)
+|.++.++.
T Consensus 889 ~~~~i~V~k 897 (908)
T COG0419 889 ADVRIRVKK 897 (908)
T ss_pred CCeEEEEEe
Confidence 999999875
No 479
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.41 E-value=2.2e-07 Score=91.11 Aligned_cols=113 Identities=17% Similarity=0.155 Sum_probs=66.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHH
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLN 142 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~ 142 (610)
+++|.||||||||||.++|++.+. .|.+ .++++|+.+ ..++..+......... ..+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~~----------------~v~~~D~~~-~~~~~~~~~~~~~~~~-~~~~~ 58 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPKV----------------VIISQDSYY-KDLSHEELEERKNNNY-DHPDA 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCCe----------------EEEEecccc-cccccccHHHhccCCC-CCCCc
Confidence 589999999999999999999872 2323 233333322 1222222222111000 00111
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCH
Q 044112 143 RAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDS 205 (610)
Q Consensus 143 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~ 205 (610)
...+...+.++.+...+..+.++ ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 59 ~~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 59 FDFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ccHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 11223445666666554444443 4678888776555 5678999999999999986
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.35 E-value=2.7e-07 Score=88.97 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=47.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChh-ccc-ceEEEEccCCCCCCCCCHHHHHHHH
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNIT-QFR-RISGYVTQDEVLFPLLTVKETLMYS 132 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~-~~~-~~~~yv~Q~~~l~~~lTv~E~l~~~ 132 (610)
+||+++|+|+||||||||+++|+|++.+ +.++|.++... ..+ ...++.+|+...++..++.++..+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 6999999999999999999999999754 46788765431 122 2356667765555555666655543
No 481
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.29 E-value=1.8e-06 Score=95.24 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=46.4
Q ss_pred hCCCEEEEeCCCCC----C-----CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcH-------HHHHhcceEEEeeCCe
Q 044112 189 HDPAVLLIDEPTSG----L-----DSASALNVASLLKYMAVKQGKTIVLTIHQPGF-------RILELFDQILLLSKGT 251 (610)
Q Consensus 189 ~~p~llllDEPtsg----L-----D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G~ 251 (610)
.+|+++++|.-++= + +....++++..|.+++++.|.|++++.|.... .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47899999976541 1 12345667778888888999999999996442 1567899999998654
No 482
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.29 E-value=4.5e-06 Score=85.84 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=85.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhccc-ceEEEEccCCCCCCCCCHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFR-RISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~-~~~~yv~Q~~~l~~~lTv~E 127 (610)
..|+++.+-+++|+++.|.||+|+|||||+..++...... ....|.+-..+.+..+.. +..+.....+...+. +
T Consensus 18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~~~~~~~r~~~~~~~~~~~~~~-~--- 92 (271)
T cd01122 18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEPVVRTARRLLGQYAGKRLHLPD-T--- 92 (271)
T ss_pred ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccCHHHHHHHHHHHHhCCCcccCC-c---
Confidence 5788888899999999999999999999999887653211 011232222221111111 100000000000000 0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH--hCCCEEEEeCCCCCCCH
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV--HDPAVLLIDEPTSGLDS 205 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~llllDEPtsgLD~ 205 (610)
......++++++++.+.-.+... .+ + .....+ ..+-+..++.++ .+|+++++|..+.-.+.
T Consensus 93 ------------~~~~~~~~~~~~~~~~~~~~~l~-i~-d-~~~~~~--~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 93 ------------VFIYTLEEFDAAFDEFEGTGRLF-MY-D-SFGEYS--MDSVLEKVRYMAVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred ------------cccccHHHHHHHHHHhcCCCcEE-EE-c-CCCccC--HHHHHHHHHHHHhcCCceEEEECCHHHHhcc
Confidence 00011223333443332111000 00 0 001112 233445555555 37999999998764332
Q ss_pred -------H-HHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 206 -------A-SALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 206 -------~-~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
. ...+++..|++++++.+.||++++|-.
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~~ 191 (271)
T cd01122 156 ERASGDERKALDEIMTKLRGFATEHGIHITLVSHLR 191 (271)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 1 245778889999999999999999853
No 483
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=0.00053 Score=70.31 Aligned_cols=209 Identities=17% Similarity=0.146 Sum_probs=130.4
Q ss_pred ChHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHHHHHHHhhcCCCCccccchhHHHHHHHHHH-HHHHHHH--HhhH
Q 044112 329 PPFKEVIILVQRFSSNIRRTKQLF-AARILQSVVAGIVLGTIFMNAYNDPRRMKLQTQIGFFAFSL-TFLLSST--TEGL 404 (610)
Q Consensus 329 ~~~~q~~~l~~R~~~~~~Rd~~~~-~~r~~~~i~~~ll~G~~f~~~~~~~~~~~~~~~~g~lff~~-~~~~~~~--~~~i 404 (610)
..++..+.|.+|..+...|+...= .=.++..+++.++++.+|-.+-..+ .-+..-.++..+ ...+++. ..+.
T Consensus 15 ~~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~----~~~~~~~l~~G~~~w~f~~~~i~~~~ 90 (263)
T COG1682 15 KYRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP----GLNFLAYLLAGLILWFFFSEAISEGA 90 (263)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHHHHHHhHH
Confidence 346678889999999988876422 1234444444555555553332221 111111111111 1112221 2234
Q ss_pred HHHHHHhHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 044112 405 PIYLEERKILMRETSRGAYRISSYVISNTLVFLPFLLIVALLYTIPVYWLTGLRREMDGFLYFSFVVWLVVLTSNSFVAC 484 (610)
Q Consensus 405 ~~~~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~~~~~~ 484 (610)
..+.+...+++|-+ ..+..+.+++++.++-...+..++....+-+.-+.+ ..++......+.+..+.+.+++.+
T Consensus 91 ~s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~ 164 (263)
T COG1682 91 GSVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLI 164 (263)
T ss_pred HHhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554432 278899999999998887776655555554444443 344555555666667777788888
Q ss_pred HHhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCC
Q 044112 485 FSALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGE 547 (610)
Q Consensus 485 i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~ 547 (610)
+|+++.-..--..+.+.++-+++..+|.+-+.+++|+-++|+.++||+.+-.|.+=..-+++.
T Consensus 165 ~a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~ 227 (263)
T COG1682 165 LASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGD 227 (263)
T ss_pred HHhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCC
Confidence 887765544444466667777888999999999999999999999999999999765555544
No 484
>PRK01889 GTPase RsgA; Reviewed
Probab=98.27 E-value=7.8e-07 Score=95.22 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=71.5
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLM 130 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~ 130 (610)
++.+.-.+++|+.++|+|+||+|||||+|.|+|..++. .|+|.+++........++.+++++|+..++++ ....++.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~--~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK--TGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc--eeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhc
Confidence 44455567799999999999999999999999998876 89999987543223345678999998877764 4454544
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCcccccc
Q 044112 131 YSARLRLHVGLNRAKARVSELLKELGLEHVANV 163 (610)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 163 (610)
+.... ......-....++.+.+...+|.+.
T Consensus 262 l~~~~---~~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 262 LWDAE---DGVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred ccCch---hhHHHhHHHHHHHHccCCCCCCCCC
Confidence 32110 0011112345556666666666554
No 485
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.27 E-value=0.00063 Score=68.92 Aligned_cols=222 Identities=14% Similarity=0.108 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhhcC-C-CCccccchhHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Q 044112 335 IILVQRFSSNIRRTKQLFAARILQSVVAGIVLGTIFMNA-Y-NDPRRMKLQTQIGFFAFSLTFLLSSTTEGLPIYLEERK 412 (610)
Q Consensus 335 ~~l~~R~~~~~~Rd~~~~~~r~~~~i~~~ll~G~~f~~~-~-~~~~~~~~~~~~g~lff~~~~~~~~~~~~i~~~~~er~ 412 (610)
+.+.||.++.+.|.|..+..-.+..++.|+.. ..|.+. + .+.+..+.+ +++.+......+ .+|.. --.
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~---~~f~~~~~~~~~----~~p~l--~~~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLT---PFFSLAPWVFLF----LIPAI--TMR 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHH---HHHHHHHHHHHH----HHHHH--HHH
Confidence 46789999999999998887777666666442 222111 1 010011211 111111110000 11111 124
Q ss_pred HHHHHhcCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhhccC--CccchHHHHHHHHHHHHHHHHHH
Q 044112 413 ILMRETSRGAY--------RISSYVISNTLVFLPFLLIVAL---LYTIPVYWLTG--LRREMDGFLYFSFVVWLVVLTSN 479 (610)
Q Consensus 413 v~~rE~~~~~Y--------~~~~y~la~~l~~lp~~~~~~~---~f~~i~Y~~~g--l~~~~~~f~~f~~~~~l~~~~~~ 479 (610)
.+.+||++|.. +++.++++|.++-.-..++..+ ++....++... -..+...++...+..++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 56677777764 5678899999988665443332 22222222211 11244555544455566666778
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCc--chhhhhhhccCcchHHHHHHHHHHhCCCCCcccccccc
Q 044112 480 SFVACFSALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNI--PKYWIFMHYLSLFKYPFECFMINEYGGEKGKQRCLQAL 557 (610)
Q Consensus 480 ~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~i--p~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~C~~~~ 557 (610)
++|.++|++.++...|..+...+. +.++.|+.. ..++ |++.+|+.|+||..|-.+.. .|.
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~--~~l~~~~~~-l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g~---------- 213 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLC--FLFYFGFDG-LASLLWGGSAYTISELGLSYHYESIS-----RGV---------- 213 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHH--HHHHHHHHH-HhhhcchhHHHHHHHcCHHHHHHHHH-----cCc----------
Confidence 999999999998887755443332 223333221 2334 88899999999987754432 110
Q ss_pred CCccccchHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044112 558 EGTCFLYGDGFLAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYR 604 (610)
Q Consensus 558 ~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~ 604 (610)
+ .|.++...+.+.+++..++...++.|
T Consensus 214 ----------------i----~~~~~v~~~~~~~~~l~l~~~~~~~r 240 (240)
T TIGR03518 214 ----------------I----DSRDVIYFLSITVLFLALTKLQLKSR 240 (240)
T ss_pred ----------------c----cHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0 14677788888888888887776643
No 486
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.1e-06 Score=108.62 Aligned_cols=60 Identities=25% Similarity=0.413 Sum_probs=52.7
Q ss_pred CCccCHHHhhHHH----HHHH--------HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 170 SRGISGGEKRRVS----IGVD--------LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 170 ~~~LSgGerqRv~----ia~a--------L~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
..+||||||||+. +|++ +..+|++++|||||+|||+.+...++++++++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 4799999999996 5644 45899999999999999999999999999876 67899999874
No 487
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.25 E-value=2.5e-06 Score=104.80 Aligned_cols=164 Identities=21% Similarity=0.272 Sum_probs=89.7
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHH
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYS 132 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~ 132 (610)
=+++..+.+++++|.|++|+|||||++.+++.... ..+|.+++++..+... .. .+-.++... .+....
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~--~~--~~~~~~~~~-------~~~~~~ 266 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKS--ME--IYSSANPDD-------YNMKLH 266 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccc--hh--hcccccccc-------cchhHH
Confidence 35677788999999999999999999999877644 3478898876332110 00 010010000 000000
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044112 133 ARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVA 212 (610)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~ 212 (610)
..++.+.++++..++. + ..+ ++.|+| |..++-+++||+- |... .+
T Consensus 267 ----------l~~~~l~~il~~~~~~------~-----~~~-~~~~~~------L~~krvLLVLDdv----~~~~---~l 311 (1153)
T PLN03210 267 ----------LQRAFLSEILDKKDIK------I-----YHL-GAMEER------LKHRKVLIFIDDL----DDQD---VL 311 (1153)
T ss_pred ----------HHHHHHHHHhCCCCcc------c-----CCH-HHHHHH------HhCCeEEEEEeCC----CCHH---HH
Confidence 0122334444443331 1 122 566666 3355667889983 4333 34
Q ss_pred HHHHHHHH--hCCcEEEEEecCCcHHHHHh-cceEEEeeCCeEEEEcChhHHHHHHHHcCC
Q 044112 213 SLLKYMAV--KQGKTIVLTIHQPGFRILEL-FDQILLLSKGTVVHHGSLDLLEHRLRIAGH 270 (610)
Q Consensus 213 ~~L~~la~--~~g~tvi~~~H~~~~~i~~~-~D~v~~L~~G~iv~~g~~~~~~~~~~~~g~ 270 (610)
+.|....+ ..|.+||+|||+... +... +|+++-+.. -+.+++.+.|....+
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 44443321 248899999999763 3222 576655531 133556666665544
No 488
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.24 E-value=0.00037 Score=71.35 Aligned_cols=164 Identities=21% Similarity=0.297 Sum_probs=94.0
Q ss_pred HHHHHhcCCC--------CChHHHHHHHHHHHHHHHH---HHHH-HHhh-hhhh-ccCCccchHHHHHHHHHHHHHHH--
Q 044112 413 ILMRETSRGA--------YRISSYVISNTLVFLPFLL---IVAL-LYTI-PVYW-LTGLRREMDGFLYFSFVVWLVVL-- 476 (610)
Q Consensus 413 v~~rE~~~~~--------Y~~~~y~la~~l~~lp~~~---~~~~-~f~~-i~Y~-~~gl~~~~~~f~~f~~~~~l~~~-- 476 (610)
.+.+|+++|. ++...++++|.++.+...+ +... .+.. ..++ ..|.+.+...++...+......+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 5666666653 5778999999999888732 2111 1111 1222 24455566665554444443333
Q ss_pred -HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhcccc-CCCCcchhh-----hhhhccCcchHHHHHHHHHHhCCCCC
Q 044112 477 -TSNSFVACFSALVPNFIMGNCLIAGIMGSYFLFSGYFI-SKDNIPKYW-----IFMHYLSLFKYPFECFMINEYGGEKG 549 (610)
Q Consensus 477 -~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i-~~~~ip~~~-----~Wl~yiSp~~Y~~e~l~~nef~~~~~ 549 (610)
+..+++.++|+++++...|......++........... ..++ +.+. ..+.+++|..+ ++........+..
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~- 245 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIAN-SEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF- 245 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc-
Confidence 45899999999999888887766665544433332222 1111 1122 23466666542 2222222221110
Q ss_pred ccccccccCCccccchHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044112 550 KQRCLQALEGTCFLYGDGFLAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYR 604 (610)
Q Consensus 550 ~~~C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~ 604 (610)
.....|.++++++++.+++..+++..+++|
T Consensus 246 -------------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 246 -------------------------VWLSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred -------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 004578899999999999999999666554
No 489
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.24 E-value=3.1e-05 Score=91.74 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=42.4
Q ss_pred HHhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEEecCCcH
Q 044112 187 LVHDPAVLLIDEPTSGLD-SASALNVASLLKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 187 L~~~p~llllDEPtsgLD-~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~ 235 (610)
+..+|.++++|||...|| +..+..+.+.++.+. +.|..++++||+++.
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~R-K~~~~~i~~TQ~~~d 687 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLR-KLNTFVIFATQSVED 687 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence 456899999999999999 888999999999986 458899999999863
No 490
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.22 E-value=1.9e-06 Score=75.49 Aligned_cols=58 Identities=26% Similarity=0.592 Sum_probs=47.5
Q ss_pred ccccccc--cCCccccchHHHHh-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 044112 550 KQRCLQA--LEGTCFLYGDGFLA-AQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRSYR 607 (610)
Q Consensus 550 ~~~C~~~--~~~~c~~~G~~~L~-~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~~~ 607 (610)
.+.|.-. .+|...++|++||+ .|+++.+|+|||+||+++|+++|.++.++++.+.+..
T Consensus 16 ~q~C~~~Ga~~G~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~ 76 (103)
T PF06422_consen 16 NQVCAVVGAQPGSTYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFE 76 (103)
T ss_pred cCccCCCCCCCCccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567521 23445679999997 7999999999999999999999999999999877544
No 491
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.22 E-value=5.1e-06 Score=89.26 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=45.0
Q ss_pred hCCCEEEEeCCC----CCCC-----HHHHHHHHHHHHHHHHhCCcEEEEEecCCcH-------HHHHhcceEEEeeCC
Q 044112 189 HDPAVLLIDEPT----SGLD-----SASALNVASLLKYMAVKQGKTIVLTIHQPGF-------RILELFDQILLLSKG 250 (610)
Q Consensus 189 ~~p~llllDEPt----sgLD-----~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~-------~i~~~~D~v~~L~~G 250 (610)
.+|+++++|+-. ..+| ....++++..|.+++++.|.|++++.|-... .+..++|.++.++..
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 489999999953 3333 2344567777888888899999999884221 257789999988754
No 492
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.16 E-value=3.3e-05 Score=91.56 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=41.0
Q ss_pred HhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 188 VHDPAVLLIDEPTSGLD-SASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 188 ~~~p~llllDEPtsgLD-~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
-.+|+++++|||+.+|| +..+..+.+.++.+.+ .|.+++++||+++
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRK-KNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEECCHH
Confidence 35899999999999999 7889999999999865 5889999999986
No 493
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.15 E-value=2.6e-06 Score=67.21 Aligned_cols=37 Identities=32% Similarity=0.627 Sum_probs=30.2
Q ss_pred ccceeEEEeC-ceEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 51 LKNVNCEARP-GEIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 51 L~~vs~~i~~-Ge~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
+++.++++.+ |+++.|.|||||||||||++|.=.+-+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4456777776 579999999999999999999866644
No 494
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.12 E-value=5.7e-06 Score=70.72 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=36.7
Q ss_pred CccCHHHhh-HHHHHHHH------Hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044112 171 RGISGGEKR-RVSIGVDL------VH------DPAVLLIDEPTSGLDSASALNVASLLKY 217 (610)
Q Consensus 171 ~~LSgGerq-Rv~ia~aL------~~------~p~llllDEPtsgLD~~~~~~i~~~L~~ 217 (610)
.++|||||| .+.++.++ -. .|++++||||+++||+.....++++|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 589999994 44444433 22 3789999999999999999999999874
No 495
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.12 E-value=0.0012 Score=67.78 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhhccccCCCCcchhhhhhhccCcchHHHHHHHHHHhCCCCCccc
Q 044112 473 LVVLTSNSFVACFSALVPNFIMGNCLIAGIMGSYFLFSGYFISKDNIPKYWIFMHYLSLFKYPFECFMINEYGGEKGKQR 552 (610)
Q Consensus 473 l~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~~lfsGf~i~~~~ip~~~~Wl~yiSp~~Y~~e~l~~nef~~~~~~~~ 552 (610)
+..+.+.++|.++|++..-..-...+.++++.+++..+|.+-+.+.+|++++|+.++||+.+..|+.=..-+++..
T Consensus 157 l~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~~---- 232 (264)
T PRK15176 157 IAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGYH---- 232 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCcC----
Confidence 3445556666666665332222344566677778888999999999999999999999999999987555554321
Q ss_pred cccccCCccccchHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhcccccC
Q 044112 553 CLQALEGTCFLYGDGFLAAQGLKDSQKWSNIGVMLAFVFGYRFLCFLILCYRSYRTQ 609 (610)
Q Consensus 553 C~~~~~~~c~~~G~~~L~~~g~~~~~~w~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 609 (610)
..|.+....+++.++..+++++..|+.+.++|
T Consensus 233 -------------------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~ 264 (264)
T PRK15176 233 -------------------------SLYLEPFYPLAFSATLFLAGLIFHLICDTENH 264 (264)
T ss_pred -------------------------ccccChHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 01223456677777778888888777766543
No 496
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.10 E-value=6.5e-06 Score=89.74 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=71.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC---EeCCh---hcc---cceEEEE-----c
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE---QPMNI---TQF---RRISGYV-----T 114 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g---~~~~~---~~~---~~~~~yv-----~ 114 (610)
.+++++ +.+.+||.++|+|+||+|||||+++|+|..+.. ..|.|.+.| +++.. ..+ ....+++ +
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~-~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEA-DVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccC-CceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 588988 999999999999999999999999999987432 247777755 44421 111 1234445 8
Q ss_pred cCCC--CCCCCCHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHcCCc
Q 044112 115 QDEV--LFPLLTVKETLMYSARLRLHV--GLNRAKARVSELLKELGLE 158 (610)
Q Consensus 115 Q~~~--l~~~lTv~E~l~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~ 158 (610)
|++. +.+.+ +...+.-..+.+... ...+...++.+++++++|.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 8763 44544 555555444333111 2245567888899999884
No 497
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.09 E-value=8.8e-05 Score=74.90 Aligned_cols=53 Identities=25% Similarity=0.516 Sum_probs=37.0
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 188 VHDPAVLLIDEPTSGLDSASALNVA-SLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 188 ~~~p~llllDEPtsgLD~~~~~~i~-~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
+++..++++||+..|=++.....+. ..++.+.++.+..++++||..+ +.+..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~--l~~~~~ 173 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE--LAELLE 173 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG--GGGHHH
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch--hHHHhh
Confidence 3457799999999999999888775 4455666435789999999975 444433
No 498
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.09 E-value=9e-06 Score=93.05 Aligned_cols=112 Identities=21% Similarity=0.208 Sum_probs=72.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCCCC------CceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHH
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIPLR------RVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSA 133 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~~~------~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~ 133 (610)
..+.++|+||||+|||||.+++.+..++. +..+-|.+||..+.. ..+. + ++-.++
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~-d~~~----------------i-~~~llg- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRW-DPRE----------------V-TNPLLG- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccC-CHHH----------------H-hHHhcC-
Confidence 35679999999999999999999886432 012346666544310 0000 0 011111
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 044112 134 RLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS 213 (610)
Q Consensus 134 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~ 213 (610)
...+...+.+.+.++..|+.+..+..+ ..+||| +||+|| +..||+..+..+.+
T Consensus 235 -----~~~~~~~~~a~~~l~~~gl~~~~~g~v-----~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 235 -----SVHDPIYQGARRDLAETGVPEPKTGLV-----TDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----CccHHHHHHHHHHHHHcCCCchhcCch-----hhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 001111233455678888877666655 578888 999999 79999999999999
Q ss_pred HHHH
Q 044112 214 LLKY 217 (610)
Q Consensus 214 ~L~~ 217 (610)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 9864
No 499
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.09 E-value=4.2e-06 Score=84.11 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=51.6
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeE----EEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGS----VLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR 134 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~----I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~ 134 (610)
.+..+++|.||||||||||.+.|++++++. +|. |.+++...+.. .++..+++++.+ ....+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~--~g~~~v~i~~D~~~~~~~-~~~~~g~~~~~~-~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD--GELPAIQVPMDGFHLDNA-VLDAHGLRPRKG-APETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc--cCCceEEEecccccCCHH-HHHhcccccccC-CCCCCCHHHHHHHHHH
Confidence 457899999999999999999999999875 677 55555433322 233457776644 3456777777666555
Q ss_pred hc
Q 044112 135 LR 136 (610)
Q Consensus 135 ~~ 136 (610)
++
T Consensus 107 l~ 108 (229)
T PRK09270 107 LR 108 (229)
T ss_pred HH
Confidence 44
No 500
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.06 E-value=4.3e-06 Score=81.24 Aligned_cols=37 Identities=32% Similarity=0.574 Sum_probs=31.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN 102 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~ 102 (610)
|++++|+||||||||||+++|++...+ .+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~-----~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT-----QLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC-----eEEEcCEECC
Confidence 789999999999999999999998643 4677776654
Done!