Query 044112
Match_columns 610
No_of_seqs 398 out of 2436
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:11:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2.4E-51 8.3E-56 433.6 29.1 225 16-262 22-252 (366)
2 3rlf_A Maltose/maltodextrin im 100.0 9.6E-51 3.3E-55 431.6 30.0 219 18-262 3-222 (381)
3 3fvq_A Fe(3+) IONS import ATP- 100.0 4.6E-51 1.6E-55 431.3 27.3 219 18-262 4-227 (359)
4 2olj_A Amino acid ABC transpor 100.0 2E-50 6.8E-55 411.4 29.5 218 18-262 24-247 (263)
5 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-50 4.5E-55 415.1 27.6 221 17-262 6-232 (275)
6 1b0u_A Histidine permease; ABC 100.0 2.2E-50 7.4E-55 411.4 28.4 218 18-262 6-241 (262)
7 3tif_A Uncharacterized ABC tra 100.0 2.2E-50 7.4E-55 405.0 27.3 222 18-261 1-232 (235)
8 4g1u_C Hemin import ATP-bindin 100.0 2.4E-50 8.2E-55 411.8 26.2 218 17-262 10-236 (266)
9 1g6h_A High-affinity branched- 100.0 2.4E-50 8.1E-55 410.1 25.4 218 17-260 6-239 (257)
10 2pcj_A ABC transporter, lipopr 100.0 8.8E-50 3E-54 397.8 27.2 212 18-257 4-222 (224)
11 1z47_A CYSA, putative ABC-tran 100.0 1.1E-49 3.9E-54 420.7 29.4 222 16-262 12-234 (355)
12 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-49 3.8E-54 404.5 28.1 220 17-263 14-235 (256)
13 2it1_A 362AA long hypothetical 100.0 1.1E-49 3.8E-54 422.2 28.3 219 18-262 3-222 (362)
14 2yyz_A Sugar ABC transporter, 100.0 8.6E-50 2.9E-54 422.6 27.0 219 18-262 3-222 (359)
15 1g29_1 MALK, maltose transport 100.0 2.2E-49 7.4E-54 422.0 29.8 219 18-262 3-228 (372)
16 1oxx_K GLCV, glucose, ABC tran 100.0 1E-49 3.5E-54 421.9 25.3 219 18-262 3-229 (353)
17 1v43_A Sugar-binding transport 100.0 2E-49 6.9E-54 421.7 26.2 219 18-262 11-230 (372)
18 1ji0_A ABC transporter; ATP bi 100.0 2.9E-49 1E-53 398.1 25.5 217 18-262 6-227 (240)
19 3d31_A Sulfate/molybdate ABC t 100.0 5.8E-49 2E-53 414.9 26.2 215 18-262 1-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 5E-49 1.7E-53 396.1 23.3 214 18-262 1-215 (240)
21 2yz2_A Putative ABC transporte 100.0 1.1E-48 3.9E-53 399.6 25.3 223 18-263 2-227 (266)
22 2ihy_A ABC transporter, ATP-bi 100.0 1.1E-48 3.9E-53 401.9 22.3 221 15-261 18-250 (279)
23 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-47 4.1E-52 388.6 24.3 217 18-260 3-230 (250)
24 2nq2_C Hypothetical ABC transp 100.0 3.3E-47 1.1E-51 385.9 27.3 208 18-261 4-215 (253)
25 2zu0_C Probable ATP-dependent 100.0 6.3E-47 2.1E-51 386.9 25.5 222 18-262 20-253 (267)
26 2ixe_A Antigen peptide transpo 100.0 2.8E-47 9.7E-52 390.2 21.7 220 17-262 15-244 (271)
27 3nh6_A ATP-binding cassette SU 100.0 1.2E-46 4.1E-51 390.8 24.2 216 17-263 52-277 (306)
28 2ff7_A Alpha-hemolysin translo 100.0 1.5E-46 5.1E-51 379.8 22.7 218 16-262 5-231 (247)
29 2qi9_C Vitamin B12 import ATP- 100.0 2.4E-46 8.3E-51 378.4 23.2 207 18-261 4-220 (249)
30 1mv5_A LMRA, multidrug resista 100.0 9.5E-47 3.2E-51 380.5 17.4 216 18-262 1-225 (243)
31 2pjz_A Hypothetical protein ST 100.0 9.9E-46 3.4E-50 376.8 22.2 211 18-262 1-214 (263)
32 1sgw_A Putative ABC transporte 100.0 3.6E-46 1.2E-50 368.7 18.4 203 16-252 8-210 (214)
33 2ghi_A Transport protein; mult 100.0 4.5E-45 1.5E-49 371.7 22.4 216 17-262 16-241 (260)
34 2pze_A Cystic fibrosis transme 100.0 5.3E-44 1.8E-48 357.3 21.1 204 18-262 6-217 (229)
35 3gd7_A Fusion complex of cysti 100.0 1.1E-44 3.9E-49 387.4 17.0 216 17-263 18-242 (390)
36 2cbz_A Multidrug resistance-as 100.0 8.2E-44 2.8E-48 357.7 20.4 207 18-262 3-216 (237)
37 2yl4_A ATP-binding cassette SU 100.0 3.5E-43 1.2E-47 397.8 21.9 218 19-262 342-569 (595)
38 3b5x_A Lipid A export ATP-bind 100.0 6.8E-43 2.3E-47 394.4 24.2 217 17-262 340-566 (582)
39 3b60_A Lipid A export ATP-bind 100.0 7.8E-43 2.7E-47 393.9 24.4 218 17-263 340-567 (582)
40 4a82_A Cystic fibrosis transme 100.0 6.5E-43 2.2E-47 394.2 22.3 217 17-263 338-564 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 6.6E-43 2.3E-47 394.6 21.8 217 17-263 340-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 9.2E-43 3.2E-47 394.3 18.9 216 17-263 353-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 2.1E-41 7.1E-46 349.5 17.4 200 17-262 39-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 2E-41 6.8E-46 412.8 19.0 219 18-263 1076-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 5.3E-40 1.8E-44 400.3 23.1 217 17-262 414-640 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 4E-39 1.4E-43 391.6 23.8 218 17-263 386-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 7.4E-39 2.5E-43 389.3 21.7 220 17-263 1029-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 2.2E-38 7.6E-43 357.3 22.4 207 16-263 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.3E-38 1.1E-42 352.1 20.5 207 16-263 285-493 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-37 3.7E-42 347.3 20.2 208 16-262 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 1.7E-36 5.7E-41 341.5 17.9 192 49-263 361-559 (608)
52 3bk7_A ABC transporter ATP-bin 100.0 3.2E-36 1.1E-40 339.7 11.6 183 49-251 106-305 (607)
53 2iw3_A Elongation factor 3A; a 100.0 9.4E-35 3.2E-39 338.7 24.0 203 13-263 430-635 (986)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 5.6E-36 1.9E-40 334.1 11.6 200 16-251 18-235 (538)
55 3ux8_A Excinuclease ABC, A sub 100.0 3.6E-35 1.2E-39 336.6 17.7 205 49-262 32-297 (670)
56 2iw3_A Elongation factor 3A; a 100.0 6.5E-35 2.2E-39 340.1 14.4 207 16-257 669-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 2.7E-33 9.3E-38 321.0 18.3 196 49-262 336-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 5.1E-33 1.7E-37 313.2 11.0 188 49-254 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 3.9E-33 1.3E-37 310.6 8.7 174 59-253 23-216 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 1.6E-30 5.5E-35 300.6 20.1 199 49-262 511-826 (842)
61 3pih_A Uvrabc system protein A 100.0 6.8E-30 2.3E-34 297.7 22.8 199 49-262 598-901 (916)
62 2r6f_A Excinuclease ABC subuni 100.0 2E-30 6.7E-35 300.3 16.7 199 49-262 638-941 (972)
63 2ygr_A Uvrabc system protein A 100.0 6.6E-30 2.3E-34 296.9 16.7 199 49-262 656-959 (993)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 1.6E-32 5.6E-37 299.9 -8.4 186 51-261 128-336 (460)
65 4aby_A DNA repair protein RECN 100.0 8.9E-29 3.1E-33 267.4 18.9 202 49-256 49-381 (415)
66 3b85_A Phosphate starvation-in 99.9 6.6E-30 2.3E-34 251.3 -11.7 139 49-234 14-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 7.1E-26 2.4E-30 241.2 17.7 83 169-254 276-364 (365)
68 1e69_A Chromosome segregation 99.9 1.3E-25 4.4E-30 235.2 13.5 199 52-261 16-311 (322)
69 1tq4_A IIGP1, interferon-induc 99.9 5.4E-28 1.8E-32 260.1 -10.0 177 49-251 37-255 (413)
70 4gp7_A Metallophosphoesterase; 99.9 6.7E-26 2.3E-30 215.7 3.4 143 53-234 1-160 (171)
71 1znw_A Guanylate kinase, GMP k 99.9 1.6E-28 5.6E-33 240.8 -16.6 179 49-249 10-203 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 1.2E-24 4E-29 208.8 3.7 145 63-254 2-159 (178)
73 2v9p_A Replication protein E1; 99.9 7.4E-28 2.5E-32 249.1 -20.8 169 18-267 101-270 (305)
74 3b9q_A Chloroplast SRP recepto 99.9 4.3E-25 1.5E-29 229.0 -1.5 175 51-252 90-284 (302)
75 3sop_A Neuronal-specific septi 99.9 9.3E-25 3.2E-29 223.1 -3.8 148 63-234 4-151 (270)
76 2dpy_A FLII, flagellum-specifi 99.9 7.2E-25 2.5E-29 238.2 -6.4 177 49-261 146-342 (438)
77 2og2_A Putative signal recogni 99.9 6.5E-24 2.2E-28 224.5 -0.3 174 52-252 148-341 (359)
78 2vf7_A UVRA2, excinuclease ABC 99.9 1.5E-21 5.2E-26 225.8 16.3 110 144-262 356-474 (842)
79 1cr0_A DNA primase/helicase; R 99.9 8.7E-23 3E-27 210.7 4.8 185 49-252 23-237 (296)
80 2o5v_A DNA replication and rep 99.9 3.6E-21 1.2E-25 203.8 14.6 85 168-261 260-354 (359)
81 1z6g_A Guanylate kinase; struc 99.8 5.8E-26 2E-30 224.8 -21.0 175 49-244 11-204 (218)
82 2pt7_A CAG-ALFA; ATPase, prote 99.8 9.9E-23 3.4E-27 213.9 2.3 132 50-252 160-292 (330)
83 2obl_A ESCN; ATPase, hydrolase 99.8 1.2E-22 4.2E-27 214.4 -1.4 194 17-261 44-253 (347)
84 3aez_A Pantothenate kinase; tr 99.8 7.5E-24 2.6E-28 220.7 -11.2 159 58-250 87-245 (312)
85 3qkt_A DNA double-strand break 99.8 3.2E-20 1.1E-24 195.6 15.6 77 169-248 245-327 (339)
86 2jeo_A Uridine-cytidine kinase 99.8 6.8E-22 2.3E-26 198.7 1.8 178 45-265 10-189 (245)
87 3pih_A Uvrabc system protein A 99.8 7.3E-21 2.5E-25 221.9 10.0 160 77-262 384-559 (916)
88 4ad8_A DNA repair protein RECN 99.8 2.2E-20 7.5E-25 207.7 13.0 78 169-250 393-473 (517)
89 1tf7_A KAIC; homohexamer, hexa 99.8 3.4E-23 1.2E-27 230.8 -11.1 167 49-250 26-210 (525)
90 2o8b_B DNA mismatch repair pro 99.8 4.1E-21 1.4E-25 227.4 2.8 176 17-260 749-939 (1022)
91 1tf7_A KAIC; homohexamer, hexa 99.8 3.9E-20 1.3E-24 206.1 9.0 155 55-251 275-444 (525)
92 3thx_A DNA mismatch repair pro 99.8 1.3E-19 4.5E-24 212.2 12.1 150 49-260 650-810 (934)
93 2ehv_A Hypothetical protein PH 99.8 8.4E-21 2.9E-25 189.7 0.5 169 50-248 18-206 (251)
94 2r6f_A Excinuclease ABC subuni 99.8 5.6E-19 1.9E-23 204.9 15.0 133 121-262 450-599 (972)
95 2qnr_A Septin-2, protein NEDD5 99.8 1.6E-21 5.4E-26 202.3 -6.4 158 45-234 9-168 (301)
96 4a74_A DNA repair and recombin 99.8 1.5E-20 5.2E-25 185.4 0.7 154 56-251 20-201 (231)
97 2ygr_A Uvrabc system protein A 99.8 9.7E-19 3.3E-23 203.6 13.0 135 120-263 466-617 (993)
98 3thx_B DNA mismatch repair pro 99.8 6.1E-20 2.1E-24 214.4 0.6 154 49-254 661-816 (918)
99 3asz_A Uridine kinase; cytidin 99.8 2.9E-21 9.8E-26 189.0 -9.1 147 58-234 3-162 (211)
100 2eyu_A Twitching motility prot 99.8 2.6E-19 8.9E-24 181.8 4.2 133 49-249 15-147 (261)
101 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 3.7E-18 1.3E-22 158.4 10.2 80 169-251 54-141 (148)
102 1rj9_A FTSY, signal recognitio 99.7 8.4E-20 2.9E-24 189.4 -2.6 150 60-234 101-259 (304)
103 1w1w_A Structural maintenance 99.7 1E-17 3.5E-22 182.0 12.9 76 171-249 332-411 (430)
104 3szr_A Interferon-induced GTP- 99.7 4.7E-20 1.6E-24 208.6 -6.1 193 18-262 10-236 (608)
105 1ewq_A DNA mismatch repair pro 99.7 6E-19 2E-23 203.1 2.1 131 49-241 567-704 (765)
106 1pzn_A RAD51, DNA repair and r 99.7 1.5E-19 5E-24 191.3 -2.9 165 50-256 119-308 (349)
107 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.4E-18 4.6E-23 171.3 3.6 168 49-250 10-192 (235)
108 1wb9_A DNA mismatch repair pro 99.7 1.2E-18 4E-23 201.8 2.6 156 49-257 596-752 (800)
109 1nlf_A Regulatory protein REPA 99.7 2.4E-17 8.2E-22 168.6 10.6 152 57-234 26-182 (279)
110 2i3b_A HCR-ntpase, human cance 99.7 2.3E-19 7.7E-24 173.5 -7.7 156 61-255 1-168 (189)
111 1pui_A ENGB, probable GTP-bind 99.7 1.8E-18 6.1E-23 168.1 -4.8 174 18-224 3-201 (210)
112 3jvv_A Twitching mobility prot 99.6 4.1E-17 1.4E-21 172.7 4.8 128 57-250 119-246 (356)
113 2qag_C Septin-7; cell cycle, c 99.6 4.8E-18 1.6E-22 183.2 -2.7 165 17-234 10-178 (418)
114 1s96_A Guanylate kinase, GMP k 99.6 4.5E-18 1.5E-22 168.2 -4.4 150 55-266 10-163 (219)
115 2cvh_A DNA repair and recombin 99.6 5.3E-16 1.8E-20 151.7 6.8 155 49-250 7-185 (220)
116 2bdt_A BH3686; alpha-beta prot 99.6 1.2E-19 4.1E-24 174.4 -19.3 173 61-262 2-183 (189)
117 1lw7_A Transcriptional regulat 99.6 1.7E-18 5.9E-23 184.1 -16.4 165 50-249 157-343 (365)
118 3kta_B Chromosome segregation 99.6 8.8E-15 3E-19 139.2 10.4 88 170-261 62-156 (173)
119 1zp6_A Hypothetical protein AT 99.5 1.2E-17 4.2E-22 160.2 -10.2 152 57-231 5-159 (191)
120 2qag_B Septin-6, protein NEDD5 99.5 1.1E-16 3.6E-21 172.2 -4.3 172 49-232 29-218 (427)
121 1nij_A Hypothetical protein YJ 99.5 2.7E-18 9.4E-23 179.3 -18.4 160 61-242 4-197 (318)
122 2bbw_A Adenylate kinase 4, AK4 99.5 3.8E-17 1.3E-21 164.0 -9.6 145 60-221 26-199 (246)
123 1n0w_A DNA repair protein RAD5 99.5 1.4E-14 4.7E-19 143.8 8.9 154 50-250 12-209 (243)
124 2gza_A Type IV secretion syste 99.5 3.3E-15 1.1E-19 158.6 4.0 138 50-251 164-303 (361)
125 1htw_A HI0065; nucleotide-bind 99.5 1.4E-16 4.8E-21 149.5 -6.7 77 49-131 21-97 (158)
126 2ewv_A Twitching motility prot 99.5 3.4E-15 1.1E-19 159.1 3.0 132 49-248 126-257 (372)
127 2rcn_A Probable GTPase ENGC; Y 99.5 1.2E-14 4.2E-19 153.2 5.5 139 50-219 205-345 (358)
128 3e70_C DPA, signal recognition 99.5 2.1E-15 7.2E-20 157.8 -1.6 144 59-233 127-279 (328)
129 2yhs_A FTSY, cell division pro 99.5 1.3E-15 4.5E-20 165.8 -3.3 153 52-231 284-447 (503)
130 2qm8_A GTPase/ATPase; G protei 99.5 2.7E-17 9.3E-22 173.1 -17.5 161 49-220 43-260 (337)
131 2f1r_A Molybdopterin-guanine d 99.4 8.4E-16 2.9E-20 146.1 -7.3 139 62-223 3-164 (171)
132 3auy_A DNA double-strand break 99.4 3.7E-13 1.2E-17 143.3 11.5 77 169-249 277-360 (371)
133 2yv5_A YJEQ protein; hydrolase 99.4 9.3E-15 3.2E-19 151.4 -1.2 120 58-186 162-301 (302)
134 3ec2_A DNA replication protein 99.4 4E-14 1.4E-18 134.7 2.1 113 55-235 32-145 (180)
135 1udx_A The GTP-binding protein 99.4 6.9E-15 2.4E-19 158.5 -5.3 169 51-244 147-319 (416)
136 3lda_A DNA repair protein RAD5 99.4 1.8E-13 6E-18 146.9 5.1 151 55-251 172-364 (400)
137 2kjq_A DNAA-related protein; s 99.4 2.2E-13 7.5E-18 126.4 4.3 95 49-234 29-126 (149)
138 1odf_A YGR205W, hypothetical 3 99.4 4.1E-14 1.4E-18 145.6 -1.6 130 59-207 29-169 (290)
139 1p9r_A General secretion pathw 99.4 9.2E-16 3.1E-20 165.5 -14.8 133 49-195 157-314 (418)
140 2oap_1 GSPE-2, type II secreti 99.3 1.4E-15 4.8E-20 168.2 -15.0 175 49-242 248-458 (511)
141 1sxj_E Activator 1 40 kDa subu 99.3 1.2E-12 4.3E-17 137.4 7.3 136 64-235 39-176 (354)
142 1in4_A RUVB, holliday junction 99.3 2.2E-14 7.5E-19 150.6 -10.2 165 49-243 32-211 (334)
143 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 4E-15 1.4E-19 159.0 -16.6 171 57-260 16-210 (392)
144 3c8u_A Fructokinase; YP_612366 99.2 3.5E-14 1.2E-18 138.6 -10.3 164 58-265 19-183 (208)
145 2r6a_A DNAB helicase, replicat 99.2 5.2E-12 1.8E-16 138.0 5.4 181 49-252 191-401 (454)
146 1lvg_A Guanylate kinase, GMP k 99.2 5.8E-15 2E-19 143.4 -17.7 153 59-249 2-173 (198)
147 1u0l_A Probable GTPase ENGC; p 99.2 5.7E-13 2E-17 137.8 -3.7 107 57-175 165-294 (301)
148 1t9h_A YLOQ, probable GTPase E 99.2 7.7E-13 2.6E-17 136.9 -3.0 117 56-180 168-303 (307)
149 2dr3_A UPF0273 protein PH0284; 99.2 1.9E-12 6.3E-17 128.5 -0.7 61 189-249 127-196 (247)
150 2x8a_A Nuclear valosin-contain 99.2 2.5E-14 8.4E-19 146.2 -15.8 141 49-215 34-190 (274)
151 1sq5_A Pantothenate kinase; P- 99.1 8.6E-13 2.9E-17 136.9 -5.2 127 49-205 49-199 (308)
152 1vma_A Cell division protein F 99.1 8.1E-11 2.8E-15 121.8 5.3 113 54-219 97-212 (306)
153 3lnc_A Guanylate kinase, GMP k 99.0 5.6E-14 1.9E-18 139.3 -20.2 38 49-86 15-53 (231)
154 2zr9_A Protein RECA, recombina 99.0 5.1E-10 1.7E-14 118.0 9.0 155 50-257 48-237 (349)
155 1ls1_A Signal recognition part 99.0 1.1E-09 3.6E-14 112.9 10.7 118 52-218 91-209 (295)
156 2ius_A DNA translocase FTSK; n 99.0 2.1E-11 7.2E-16 134.1 -2.5 164 53-234 159-343 (512)
157 2px0_A Flagellar biosynthesis 98.9 9.1E-10 3.1E-14 113.5 6.8 142 59-255 103-247 (296)
158 3k1j_A LON protease, ATP-depen 98.9 3.2E-11 1.1E-15 136.4 -6.1 158 49-217 48-227 (604)
159 3euj_A Chromosome partition pr 98.9 4.8E-10 1.6E-14 122.4 3.3 51 49-102 18-68 (483)
160 1oix_A RAS-related protein RAB 98.9 3.2E-10 1.1E-14 108.6 1.2 140 63-217 31-188 (191)
161 1iy2_A ATP-dependent metallopr 98.9 2E-12 6.9E-17 131.8 -15.1 121 49-193 63-190 (278)
162 3hr8_A Protein RECA; alpha and 98.8 1.6E-09 5.4E-14 114.2 5.6 161 50-250 48-230 (356)
163 3tr0_A Guanylate kinase, GMP k 98.8 1.1E-10 3.7E-15 112.7 -3.1 69 55-129 1-72 (205)
164 1ixz_A ATP-dependent metallopr 98.8 3.2E-12 1.1E-16 128.2 -15.2 126 49-200 39-171 (254)
165 1qhl_A Protein (cell division 98.7 4.6E-10 1.6E-14 111.1 -4.0 59 55-116 22-91 (227)
166 3kta_A Chromosome segregation 98.6 2.3E-09 7.8E-14 101.6 -2.6 121 50-182 14-152 (182)
167 4a1f_A DNAB helicase, replicat 98.6 5.7E-08 2E-12 101.6 6.6 130 49-231 34-164 (338)
168 2f9l_A RAB11B, member RAS onco 98.5 4.5E-08 1.6E-12 93.8 5.2 38 180-219 129-166 (199)
169 2qtf_A Protein HFLX, GTP-bindi 98.5 1.9E-07 6.4E-12 98.9 8.6 150 60-221 177-354 (364)
170 4eun_A Thermoresistant glucoki 98.5 4.6E-09 1.6E-13 101.4 -3.7 71 51-127 19-91 (200)
171 2ce7_A Cell division protein F 98.5 1.6E-07 5.5E-12 102.6 7.7 114 49-234 39-165 (476)
172 1svm_A Large T antigen; AAA+ f 98.5 4.3E-10 1.5E-14 119.6 -12.4 142 49-201 157-312 (377)
173 2xau_A PRE-mRNA-splicing facto 98.3 5.4E-07 1.8E-11 104.5 7.4 75 170-246 188-264 (773)
174 3nwj_A ATSK2; P loop, shikimat 98.3 5.8E-08 2E-12 97.5 -1.2 52 18-85 17-72 (250)
175 2j41_A Guanylate kinase; GMP, 98.3 1.7E-07 5.7E-12 90.1 2.1 33 56-88 1-33 (207)
176 1zu4_A FTSY; GTPase, signal re 98.3 1.2E-07 4.2E-12 98.6 0.8 79 51-131 95-186 (320)
177 3cr8_A Sulfate adenylyltranfer 98.3 2.1E-08 7.3E-13 111.5 -5.8 43 57-101 365-409 (552)
178 2dhr_A FTSH; AAA+ protein, hex 98.2 6E-09 2E-13 114.6 -10.9 127 49-201 54-187 (499)
179 4e22_A Cytidylate kinase; P-lo 98.2 7.7E-08 2.6E-12 96.5 -2.1 64 49-117 18-96 (252)
180 3a00_A Guanylate kinase, GMP k 98.2 2.3E-07 7.8E-12 88.4 0.9 27 61-87 1-27 (186)
181 2e87_A Hypothetical protein PH 98.2 1.3E-06 4.6E-11 92.0 6.8 61 171-234 230-293 (357)
182 3uie_A Adenylyl-sulfate kinase 98.2 8.3E-08 2.8E-12 92.5 -2.7 50 49-101 13-64 (200)
183 1jjv_A Dephospho-COA kinase; P 98.2 2.8E-07 9.7E-12 88.9 0.7 137 63-265 4-141 (206)
184 3t34_A Dynamin-related protein 98.2 5.3E-06 1.8E-10 87.4 10.5 158 49-231 25-212 (360)
185 3bh0_A DNAB-like replicative h 98.1 1.8E-06 6.3E-11 89.4 6.1 132 49-231 56-189 (315)
186 3tqc_A Pantothenate kinase; bi 98.1 5.2E-08 1.8E-12 101.3 -6.8 39 49-87 74-118 (321)
187 1v5w_A DMC1, meiotic recombina 98.1 1.4E-05 4.8E-10 83.7 11.4 141 56-234 117-275 (343)
188 2z43_A DNA repair and recombin 98.1 2.1E-05 7E-10 81.7 12.2 146 51-233 96-258 (324)
189 2dy1_A Elongation factor G; tr 98.0 1.4E-06 4.7E-11 99.4 3.2 133 55-235 3-138 (665)
190 3vaa_A Shikimate kinase, SK; s 98.0 2E-06 6.7E-11 82.7 3.3 37 49-85 13-49 (199)
191 1fnn_A CDC6P, cell division co 98.0 3.4E-05 1.1E-09 81.1 12.1 45 189-234 124-170 (389)
192 1kgd_A CASK, peripheral plasma 98.0 3.1E-06 1.1E-10 80.1 3.2 36 60-96 4-39 (180)
193 3b9p_A CG5977-PA, isoform A; A 97.9 4.6E-05 1.6E-09 77.5 12.0 74 174-247 97-186 (297)
194 2z4s_A Chromosomal replication 97.9 2.1E-06 7.2E-11 93.1 2.0 70 189-259 193-264 (440)
195 2vp4_A Deoxynucleoside kinase; 97.9 2.1E-06 7.1E-11 84.6 1.6 41 55-101 14-54 (230)
196 1ega_A Protein (GTP-binding pr 97.9 1.4E-05 4.8E-10 82.1 7.9 65 173-245 101-170 (301)
197 1knq_A Gluconate kinase; ALFA/ 97.9 3.9E-07 1.3E-11 85.4 -3.6 37 59-101 6-42 (175)
198 2q6t_A DNAB replication FORK h 97.9 3.5E-05 1.2E-09 83.5 9.8 171 49-249 188-397 (444)
199 3tau_A Guanylate kinase, GMP k 97.8 8.2E-06 2.8E-10 79.1 3.8 29 59-87 6-34 (208)
200 1rz3_A Hypothetical protein rb 97.8 3.4E-06 1.2E-10 81.3 0.3 42 57-100 18-59 (201)
201 3ney_A 55 kDa erythrocyte memb 97.8 6.7E-06 2.3E-10 79.3 2.3 29 58-86 16-44 (197)
202 2qt1_A Nicotinamide riboside k 97.8 1.5E-05 5.2E-10 76.7 4.4 30 56-85 16-45 (207)
203 2wjg_A FEOB, ferrous iron tran 97.7 1.1E-05 3.9E-10 75.6 2.5 70 189-261 111-183 (188)
204 3kl4_A SRP54, signal recogniti 97.7 8E-05 2.7E-09 80.2 9.0 125 60-232 96-223 (433)
205 3cf0_A Transitional endoplasmi 97.7 4.9E-05 1.7E-09 77.9 6.9 30 56-85 44-73 (301)
206 2qby_A CDC6 homolog 1, cell di 97.7 5.8E-06 2E-10 86.6 -0.1 28 59-86 43-70 (386)
207 1u94_A RECA protein, recombina 97.6 0.00016 5.6E-09 76.0 9.6 35 50-84 50-86 (356)
208 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 4E-05 1.4E-09 70.4 4.3 30 52-82 15-44 (149)
209 1cke_A CK, MSSA, protein (cyti 97.6 3.1E-06 1.1E-10 82.6 -3.7 57 61-117 5-74 (227)
210 1kag_A SKI, shikimate kinase I 97.6 2.5E-05 8.6E-10 72.6 2.6 27 60-86 3-29 (173)
211 1ypw_A Transitional endoplasmi 97.5 6.4E-05 2.2E-09 87.5 5.8 31 56-86 233-263 (806)
212 3bgw_A DNAB-like replicative h 97.5 0.00013 4.4E-09 79.1 7.8 180 49-249 185-394 (444)
213 2p67_A LAO/AO transport system 97.5 1.2E-05 4E-10 84.2 -1.4 50 49-100 44-93 (341)
214 2i1q_A DNA repair and recombin 97.4 0.0006 2.1E-08 70.3 11.5 171 50-249 86-290 (322)
215 3lxx_A GTPase IMAP family memb 97.4 0.00095 3.2E-08 65.5 11.5 43 189-231 111-154 (239)
216 3m6a_A ATP-dependent protease 97.4 3.1E-05 1E-09 86.2 0.6 48 49-99 97-144 (543)
217 1mky_A Probable GTP-binding pr 97.4 0.00014 4.9E-09 78.5 5.8 69 63-131 182-263 (439)
218 2qag_A Septin-2, protein NEDD5 97.3 7.3E-06 2.5E-10 86.5 -4.7 43 49-99 31-73 (361)
219 2www_A Methylmalonic aciduria 97.3 4.9E-05 1.7E-09 79.8 1.0 41 59-101 72-112 (349)
220 2w58_A DNAI, primosome compone 97.2 0.00029 9.8E-09 67.2 5.8 24 62-85 55-78 (202)
221 2gj8_A MNME, tRNA modification 97.2 0.00031 1.1E-08 65.3 5.8 27 59-85 2-28 (172)
222 3qks_A DNA double-strand break 97.2 0.0002 6.7E-09 69.2 4.3 30 52-82 15-44 (203)
223 3ice_A Transcription terminati 97.2 4.3E-05 1.5E-09 80.6 -0.6 33 53-85 166-198 (422)
224 3llm_A ATP-dependent RNA helic 97.2 8.8E-05 3E-09 73.0 1.4 67 174-243 162-229 (235)
225 3h4m_A Proteasome-activating n 97.1 0.00071 2.4E-08 68.0 7.8 28 58-85 48-75 (285)
226 4eaq_A DTMP kinase, thymidylat 97.1 0.00021 7.1E-09 70.4 3.6 37 50-86 12-51 (229)
227 1f6b_A SAR1; gtpases, N-termin 97.1 0.00016 5.4E-09 69.0 1.9 35 49-84 14-48 (198)
228 3cmw_A Protein RECA, recombina 97.1 0.0013 4.4E-08 81.3 10.2 29 57-85 728-756 (1706)
229 1m7g_A Adenylylsulfate kinase; 97.0 0.0001 3.5E-09 71.3 0.4 42 56-99 20-63 (211)
230 2pez_A Bifunctional 3'-phospho 97.0 0.0003 1E-08 65.9 3.5 39 59-100 3-43 (179)
231 1m2o_B GTP-binding protein SAR 97.0 0.00055 1.9E-08 64.6 5.3 35 49-84 12-46 (190)
232 1q57_A DNA primase/helicase; d 97.0 0.0041 1.4E-07 68.2 13.0 69 180-249 342-441 (503)
233 1l8q_A Chromosomal replication 97.0 0.00092 3.2E-08 68.8 6.8 45 188-233 96-141 (324)
234 4fcw_A Chaperone protein CLPB; 97.0 0.0009 3.1E-08 68.0 6.5 26 62-87 48-73 (311)
235 1y63_A LMAJ004144AAA protein; 96.9 0.00038 1.3E-08 65.7 3.1 32 53-84 2-33 (184)
236 2qor_A Guanylate kinase; phosp 96.9 0.00038 1.3E-08 66.8 3.1 29 58-86 9-37 (204)
237 2b8t_A Thymidine kinase; deoxy 96.9 0.00053 1.8E-08 67.3 4.1 53 190-248 89-150 (223)
238 2wji_A Ferrous iron transport 96.9 0.0011 3.9E-08 60.7 6.0 23 63-85 5-27 (165)
239 3bos_A Putative DNA replicatio 96.9 0.00051 1.7E-08 66.6 3.7 26 60-85 51-76 (242)
240 2ffh_A Protein (FFH); SRP54, s 96.9 0.00023 7.9E-09 76.5 1.3 47 52-102 91-137 (425)
241 3auy_A DNA double-strand break 96.8 0.0012 4.3E-08 69.5 6.4 31 51-82 16-46 (371)
242 2zts_A Putative uncharacterize 96.8 0.0042 1.4E-07 60.6 9.6 61 188-248 133-206 (251)
243 2yvu_A Probable adenylyl-sulfa 96.8 0.00035 1.2E-08 65.8 1.5 29 59-87 11-39 (186)
244 3lxw_A GTPase IMAP family memb 96.8 0.0068 2.3E-07 60.0 10.9 24 63-86 23-46 (247)
245 2if2_A Dephospho-COA kinase; a 96.7 0.00057 1.9E-08 65.2 2.8 21 63-83 3-23 (204)
246 3d8b_A Fidgetin-like protein 1 96.7 0.0056 1.9E-07 64.0 10.5 27 59-85 115-141 (357)
247 3cmu_A Protein RECA, recombina 96.7 0.0043 1.5E-07 77.7 10.8 73 180-252 449-554 (2050)
248 3io5_A Recombination and repai 96.7 0.0013 4.5E-08 67.7 5.2 27 56-83 24-51 (333)
249 2v1u_A Cell division control p 96.7 0.00077 2.6E-08 70.3 3.6 27 59-85 42-68 (387)
250 1j8m_F SRP54, signal recogniti 96.7 0.00018 6.1E-09 73.8 -1.3 47 52-101 89-136 (297)
251 1xp8_A RECA protein, recombina 96.7 0.0031 1E-07 66.5 7.9 29 56-84 69-97 (366)
252 2ga8_A Hypothetical 39.9 kDa p 96.6 0.00026 8.7E-09 74.1 -0.5 37 49-85 10-48 (359)
253 2ohf_A Protein OLA1, GTP-bindi 96.6 0.0009 3.1E-08 71.1 3.5 45 55-99 16-69 (396)
254 1np6_A Molybdopterin-guanine d 96.6 0.00078 2.7E-08 63.4 2.5 39 62-100 7-46 (174)
255 2p5t_B PEZT; postsegregational 96.6 0.00059 2E-08 67.9 1.6 46 50-100 22-67 (253)
256 3cmw_A Protein RECA, recombina 96.5 0.0064 2.2E-07 75.2 10.6 149 50-251 370-553 (1706)
257 3cm0_A Adenylate kinase; ATP-b 96.5 0.0014 4.6E-08 61.4 3.6 26 59-84 2-27 (186)
258 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.007 2.4E-07 59.6 8.8 27 59-85 37-63 (262)
259 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.027 9.1E-07 58.0 13.6 28 58-85 42-69 (322)
260 3t61_A Gluconokinase; PSI-biol 96.5 0.001 3.6E-08 63.4 2.6 25 61-85 18-42 (202)
261 1sxj_C Activator 1 40 kDa subu 96.4 0.0004 1.4E-08 72.2 -0.7 39 49-87 32-72 (340)
262 3kb2_A SPBC2 prophage-derived 96.3 0.0018 6.2E-08 59.5 3.4 23 63-85 3-25 (173)
263 1qhx_A CPT, protein (chloramph 96.3 0.0021 7E-08 59.7 3.7 26 61-86 3-28 (178)
264 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0043 1.5E-07 64.0 6.1 29 56-84 118-146 (331)
265 1q3t_A Cytidylate kinase; nucl 96.3 0.0019 6.4E-08 63.4 3.2 27 58-84 13-39 (236)
266 2zej_A Dardarin, leucine-rich 96.3 0.0019 6.6E-08 60.3 3.0 23 63-85 4-26 (184)
267 1lv7_A FTSH; alpha/beta domain 96.3 0.0015 5.2E-08 64.7 2.5 35 50-86 36-70 (257)
268 1kht_A Adenylate kinase; phosp 96.1 0.0029 9.8E-08 59.1 3.6 25 61-85 3-27 (192)
269 3r20_A Cytidylate kinase; stru 96.1 0.0029 9.8E-08 62.4 3.5 25 61-85 9-33 (233)
270 2rhm_A Putative kinase; P-loop 96.1 0.0027 9.2E-08 59.6 3.2 27 59-85 3-29 (193)
271 2r8r_A Sensor protein; KDPD, P 96.1 0.0037 1.3E-07 61.2 4.1 48 183-231 77-125 (228)
272 2ze6_A Isopentenyl transferase 96.0 0.0031 1.1E-07 62.8 3.3 24 62-85 2-25 (253)
273 1vht_A Dephospho-COA kinase; s 95.9 0.0043 1.5E-07 59.8 3.8 24 60-83 3-26 (218)
274 3lw7_A Adenylate kinase relate 95.9 0.0041 1.4E-07 56.9 3.3 19 63-81 3-21 (179)
275 1ex7_A Guanylate kinase; subst 95.9 0.004 1.4E-07 59.2 3.2 23 63-85 3-25 (186)
276 3trf_A Shikimate kinase, SK; a 95.9 0.0045 1.6E-07 57.8 3.5 26 60-85 4-29 (185)
277 2plr_A DTMP kinase, probable t 95.8 0.0051 1.7E-07 58.4 3.9 27 60-86 3-29 (213)
278 2v54_A DTMP kinase, thymidylat 95.8 0.0049 1.7E-07 58.4 3.6 26 60-85 3-28 (204)
279 2jaq_A Deoxyguanosine kinase; 95.8 0.0047 1.6E-07 58.3 3.5 23 63-85 2-24 (205)
280 3iij_A Coilin-interacting nucl 95.8 0.0043 1.5E-07 57.8 3.1 25 60-84 10-34 (180)
281 3ihw_A Centg3; RAS, centaurin, 95.7 0.0091 3.1E-07 55.8 5.2 22 63-84 22-43 (184)
282 1ly1_A Polynucleotide kinase; 95.7 0.0057 2E-07 56.5 3.6 22 62-83 3-24 (181)
283 2wwf_A Thymidilate kinase, put 95.7 0.0055 1.9E-07 58.4 3.4 27 59-85 8-34 (212)
284 3hu3_A Transitional endoplasmi 95.7 0.0089 3.1E-07 65.4 5.5 28 58-85 235-262 (489)
285 1gvn_B Zeta; postsegregational 95.7 0.0053 1.8E-07 62.3 3.4 36 59-98 31-66 (287)
286 1via_A Shikimate kinase; struc 95.7 0.0055 1.9E-07 56.9 3.2 23 63-85 6-28 (175)
287 1xx6_A Thymidine kinase; NESG, 95.6 0.012 4.1E-07 56.1 5.5 53 190-248 81-142 (191)
288 3k53_A Ferrous iron transport 95.6 0.0051 1.7E-07 61.7 3.0 45 199-244 144-188 (271)
289 1uf9_A TT1252 protein; P-loop, 95.6 0.006 2.1E-07 57.6 3.3 24 61-84 8-31 (203)
290 2c95_A Adenylate kinase 1; tra 95.6 0.0059 2E-07 57.3 3.1 27 59-85 7-33 (196)
291 1gtv_A TMK, thymidylate kinase 95.6 0.003 1E-07 60.3 1.1 24 63-86 2-25 (214)
292 1nn5_A Similar to deoxythymidy 95.5 0.0064 2.2E-07 58.0 3.3 27 59-85 7-33 (215)
293 1tev_A UMP-CMP kinase; ploop, 95.5 0.0077 2.6E-07 56.3 3.7 25 60-84 2-26 (196)
294 3cmu_A Protein RECA, recombina 95.5 0.021 7.2E-07 71.6 8.2 36 50-85 719-756 (2050)
295 1xjc_A MOBB protein homolog; s 95.5 0.007 2.4E-07 56.6 3.1 25 62-86 5-29 (169)
296 1nks_A Adenylate kinase; therm 95.5 0.007 2.4E-07 56.5 3.2 23 63-85 3-25 (194)
297 2bwj_A Adenylate kinase 5; pho 95.4 0.0026 8.9E-08 60.0 0.1 27 59-85 10-36 (199)
298 2nzj_A GTP-binding protein REM 95.3 0.0089 3.1E-07 54.5 3.3 23 63-85 6-28 (175)
299 2ged_A SR-beta, signal recogni 95.3 0.0075 2.6E-07 56.3 2.9 24 62-85 49-72 (193)
300 2erx_A GTP-binding protein DI- 95.3 0.0091 3.1E-07 54.1 3.3 23 63-85 5-27 (172)
301 1jal_A YCHF protein; nucleotid 95.3 0.012 4.1E-07 61.8 4.6 38 61-98 2-48 (363)
302 1z2a_A RAS-related protein RAB 95.3 0.008 2.7E-07 54.3 2.8 23 63-85 7-29 (168)
303 2qp9_X Vacuolar protein sortin 95.3 0.053 1.8E-06 56.5 9.5 27 59-85 82-108 (355)
304 1aky_A Adenylate kinase; ATP:A 95.3 0.01 3.5E-07 57.3 3.7 27 59-85 2-28 (220)
305 3q72_A GTP-binding protein RAD 95.2 0.0074 2.5E-07 54.6 2.5 22 64-85 5-26 (166)
306 2z0h_A DTMP kinase, thymidylat 95.2 0.01 3.5E-07 55.7 3.4 23 63-85 2-24 (197)
307 1kao_A RAP2A; GTP-binding prot 95.2 0.009 3.1E-07 53.7 2.9 23 63-85 5-27 (167)
308 3q85_A GTP-binding protein REM 95.2 0.01 3.5E-07 53.8 3.3 22 64-85 5-26 (169)
309 2dyk_A GTP-binding protein; GT 95.2 0.0092 3.2E-07 53.5 2.9 23 63-85 3-25 (161)
310 3ake_A Cytidylate kinase; CMP 95.2 0.0094 3.2E-07 56.5 3.1 23 63-85 4-26 (208)
311 2vli_A Antibiotic resistance p 95.1 0.0076 2.6E-07 56.0 2.3 26 60-85 4-29 (183)
312 1u8z_A RAS-related protein RAL 95.1 0.0093 3.2E-07 53.7 2.8 23 63-85 6-28 (168)
313 2ce2_X GTPase HRAS; signaling 95.1 0.0087 3E-07 53.7 2.5 23 63-85 5-27 (166)
314 3b1v_A Ferrous iron uptake tra 95.1 0.01 3.6E-07 59.7 3.3 23 63-85 5-27 (272)
315 2j9r_A Thymidine kinase; TK1, 95.1 0.062 2.1E-06 52.0 8.6 53 190-248 101-162 (214)
316 3tw8_B RAS-related protein RAB 95.1 0.0098 3.3E-07 54.4 2.8 23 63-85 11-33 (181)
317 1z0j_A RAB-22, RAS-related pro 95.1 0.01 3.5E-07 53.7 2.9 23 63-85 8-30 (170)
318 1zd8_A GTP:AMP phosphotransfer 95.1 0.011 3.8E-07 57.3 3.3 27 59-85 5-31 (227)
319 1fzq_A ADP-ribosylation factor 95.1 0.0088 3E-07 55.6 2.5 22 63-84 18-39 (181)
320 1z08_A RAS-related protein RAB 95.1 0.01 3.5E-07 53.8 2.9 23 63-85 8-30 (170)
321 1ek0_A Protein (GTP-binding pr 95.0 0.01 3.5E-07 53.6 2.8 22 64-85 6-27 (170)
322 3vfd_A Spastin; ATPase, microt 95.0 0.1 3.5E-06 54.9 10.9 27 59-85 146-172 (389)
323 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.011 3.7E-07 54.1 2.9 23 63-85 9-31 (177)
324 4ag6_A VIRB4 ATPase, type IV s 95.0 0.0066 2.3E-07 64.2 1.6 45 190-235 262-309 (392)
325 1svi_A GTP-binding protein YSX 95.0 0.01 3.5E-07 55.3 2.8 23 63-85 25-47 (195)
326 1c1y_A RAS-related protein RAP 95.0 0.011 3.7E-07 53.4 2.8 23 63-85 5-27 (167)
327 1g16_A RAS-related protein SEC 95.0 0.0098 3.4E-07 53.8 2.5 22 64-85 6-27 (170)
328 1ko7_A HPR kinase/phosphatase; 95.0 0.016 5.5E-07 59.5 4.4 35 49-84 133-167 (314)
329 2cdn_A Adenylate kinase; phosp 95.0 0.014 4.7E-07 55.4 3.7 26 60-85 19-44 (201)
330 1ky3_A GTP-binding protein YPT 95.0 0.011 3.8E-07 54.1 2.9 23 63-85 10-32 (182)
331 3fb4_A Adenylate kinase; psych 94.9 0.013 4.6E-07 56.0 3.4 22 63-84 2-23 (216)
332 2pbr_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 54.5 3.4 23 63-85 2-24 (195)
333 2lkc_A Translation initiation 94.9 0.016 5.4E-07 53.0 3.7 25 61-85 8-32 (178)
334 3pqc_A Probable GTP-binding pr 94.9 0.011 3.9E-07 54.8 2.8 23 63-85 25-47 (195)
335 2cxx_A Probable GTP-binding pr 94.9 0.012 4E-07 54.5 2.8 22 64-85 4-25 (190)
336 2fn4_A P23, RAS-related protei 94.9 0.011 3.8E-07 54.0 2.6 23 63-85 11-33 (181)
337 1zuh_A Shikimate kinase; alpha 94.9 0.015 5.2E-07 53.3 3.5 24 62-85 8-31 (168)
338 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.016 5.4E-07 57.7 3.9 27 59-85 2-28 (260)
339 1ukz_A Uridylate kinase; trans 94.8 0.015 5.2E-07 55.0 3.5 24 61-84 15-38 (203)
340 2hxs_A RAB-26, RAS-related pro 94.8 0.014 4.9E-07 53.3 3.2 23 63-85 8-30 (178)
341 1e6c_A Shikimate kinase; phosp 94.8 0.013 4.4E-07 53.8 2.9 24 62-85 3-26 (173)
342 4dsu_A GTPase KRAS, isoform 2B 94.8 0.013 4.3E-07 54.2 2.9 23 63-85 6-28 (189)
343 1r2q_A RAS-related protein RAB 94.8 0.013 4.4E-07 52.9 2.8 23 63-85 8-30 (170)
344 3clv_A RAB5 protein, putative; 94.8 0.013 4.4E-07 54.6 2.9 23 63-85 9-31 (208)
345 1zak_A Adenylate kinase; ATP:A 94.8 0.012 4.1E-07 56.8 2.7 26 60-85 4-29 (222)
346 1upt_A ARL1, ADP-ribosylation 94.8 0.013 4.5E-07 53.1 2.8 23 63-85 9-31 (171)
347 3dl0_A Adenylate kinase; phosp 94.7 0.016 5.4E-07 55.6 3.4 23 63-85 2-24 (216)
348 2pt5_A Shikimate kinase, SK; a 94.7 0.017 5.8E-07 52.8 3.5 22 63-84 2-23 (168)
349 3co5_A Putative two-component 94.7 0.055 1.9E-06 48.5 6.8 42 190-233 75-116 (143)
350 3dm5_A SRP54, signal recogniti 94.7 0.31 1.1E-05 52.3 13.8 27 60-86 99-125 (443)
351 1qf9_A UMP/CMP kinase, protein 94.7 0.016 5.6E-07 53.9 3.4 24 61-84 6-29 (194)
352 2oil_A CATX-8, RAS-related pro 94.7 0.014 4.7E-07 54.5 2.9 23 63-85 27-49 (193)
353 3bc1_A RAS-related protein RAB 94.7 0.014 4.7E-07 54.0 2.8 23 63-85 13-35 (195)
354 1r8s_A ADP-ribosylation factor 94.7 0.014 4.8E-07 52.6 2.8 21 64-84 3-23 (164)
355 2iyv_A Shikimate kinase, SK; t 94.7 0.014 4.6E-07 54.5 2.7 24 62-85 3-26 (184)
356 1moz_A ARL1, ADP-ribosylation 94.7 0.0091 3.1E-07 55.0 1.5 23 61-83 18-40 (183)
357 1wf3_A GTP-binding protein; GT 94.6 0.017 5.8E-07 59.0 3.5 26 59-85 6-31 (301)
358 3tlx_A Adenylate kinase 2; str 94.6 0.019 6.5E-07 56.6 3.7 25 60-84 28-52 (243)
359 3t1o_A Gliding protein MGLA; G 94.6 0.017 5.8E-07 53.6 3.2 25 63-87 16-40 (198)
360 2g6b_A RAS-related protein RAB 94.6 0.015 5.3E-07 53.2 2.8 23 63-85 12-34 (180)
361 2y8e_A RAB-protein 6, GH09086P 94.6 0.014 4.8E-07 53.2 2.5 23 63-85 16-38 (179)
362 2a9k_A RAS-related protein RAL 94.6 0.016 5.3E-07 53.4 2.8 23 63-85 20-42 (187)
363 2qmh_A HPR kinase/phosphorylas 94.6 0.03 1E-06 53.7 4.8 36 49-85 23-58 (205)
364 1z0f_A RAB14, member RAS oncog 94.6 0.016 5.4E-07 52.9 2.8 23 63-85 17-39 (179)
365 3con_A GTPase NRAS; structural 94.5 0.016 5.5E-07 53.8 2.8 23 63-85 23-45 (190)
366 2efe_B Small GTP-binding prote 94.5 0.017 5.8E-07 53.0 2.9 23 63-85 14-36 (181)
367 3t5d_A Septin-7; GTP-binding p 94.5 0.015 5E-07 58.4 2.6 22 64-85 11-32 (274)
368 3iev_A GTP-binding protein ERA 94.5 0.019 6.6E-07 58.7 3.5 23 63-85 12-34 (308)
369 3iby_A Ferrous iron transport 94.5 0.017 5.8E-07 57.6 3.0 23 63-85 3-25 (256)
370 1nrj_B SR-beta, signal recogni 94.4 0.017 5.8E-07 55.1 2.8 23 63-85 14-36 (218)
371 1uj2_A Uridine-cytidine kinase 94.4 0.02 6.9E-07 56.6 3.4 24 62-85 23-46 (252)
372 1ksh_A ARF-like protein 2; sma 94.4 0.018 6.3E-07 53.2 3.0 25 61-85 18-42 (186)
373 2bov_A RAla, RAS-related prote 94.4 0.018 6E-07 54.1 2.8 23 63-85 16-38 (206)
374 1vg8_A RAS-related protein RAB 94.4 0.018 6.1E-07 54.2 2.9 23 63-85 10-32 (207)
375 2grj_A Dephospho-COA kinase; T 94.4 0.022 7.4E-07 54.3 3.4 24 61-84 12-35 (192)
376 2bme_A RAB4A, RAS-related prot 94.4 0.016 5.6E-07 53.4 2.5 23 63-85 12-34 (186)
377 3cbq_A GTP-binding protein REM 94.4 0.015 5.1E-07 54.9 2.3 22 63-84 25-46 (195)
378 2gf9_A RAS-related protein RAB 94.4 0.018 6.3E-07 53.5 2.8 23 63-85 24-46 (189)
379 2xtp_A GTPase IMAP family memb 94.4 0.019 6.5E-07 56.8 3.0 23 63-85 24-46 (260)
380 3tkl_A RAS-related protein RAB 94.3 0.019 6.5E-07 53.4 2.8 23 63-85 18-40 (196)
381 2gf0_A GTP-binding protein DI- 94.3 0.018 6E-07 53.8 2.6 23 63-85 10-32 (199)
382 1zbd_A Rabphilin-3A; G protein 94.3 0.022 7.6E-07 53.5 3.3 23 63-85 10-32 (203)
383 2dby_A GTP-binding protein; GD 94.3 0.018 6.1E-07 60.6 2.8 21 64-84 4-24 (368)
384 1m7b_A RND3/RHOE small GTP-bin 94.3 0.018 6.1E-07 53.4 2.5 23 63-85 9-31 (184)
385 2fg5_A RAB-22B, RAS-related pr 94.3 0.018 6.3E-07 53.8 2.6 23 63-85 25-47 (192)
386 3kkq_A RAS-related protein M-R 94.3 0.02 6.9E-07 52.7 2.8 23 63-85 20-42 (183)
387 3a1s_A Iron(II) transport prot 94.3 0.023 7.7E-07 56.7 3.3 23 63-85 7-29 (258)
388 1mh1_A RAC1; GTP-binding, GTPa 94.2 0.021 7.1E-07 52.5 2.8 22 63-84 7-28 (186)
389 3llu_A RAS-related GTP-binding 94.2 0.022 7.5E-07 53.5 3.1 25 63-87 22-46 (196)
390 1jbk_A CLPB protein; beta barr 94.2 0.027 9.2E-07 51.7 3.6 27 59-85 41-67 (195)
391 2cjw_A GTP-binding protein GEM 94.2 0.021 7.1E-07 53.8 2.8 22 63-84 8-29 (192)
392 2xb4_A Adenylate kinase; ATP-b 94.2 0.025 8.6E-07 54.8 3.5 22 63-84 2-23 (223)
393 2il1_A RAB12; G-protein, GDP, 94.2 0.021 7.1E-07 53.5 2.8 23 63-85 28-50 (192)
394 1z06_A RAS-related protein RAB 94.2 0.022 7.5E-07 53.0 2.9 23 63-85 22-44 (189)
395 1jwy_B Dynamin A GTPase domain 94.2 0.021 7.3E-07 58.0 3.0 23 63-85 26-48 (315)
396 3i8s_A Ferrous iron transport 94.2 0.022 7.6E-07 57.2 3.0 23 63-85 5-27 (274)
397 1zj6_A ADP-ribosylation factor 94.1 0.024 8E-07 52.7 3.0 22 63-84 18-39 (187)
398 3v9p_A DTMP kinase, thymidylat 94.1 0.021 7.3E-07 55.9 2.8 28 58-85 22-49 (227)
399 2o52_A RAS-related protein RAB 94.1 0.024 8E-07 53.6 3.0 23 63-85 27-49 (200)
400 3oes_A GTPase rhebl1; small GT 94.1 0.02 7E-07 53.9 2.5 23 63-85 26-48 (201)
401 3be4_A Adenylate kinase; malar 94.1 0.025 8.6E-07 54.4 3.2 25 61-85 5-29 (217)
402 2wsm_A Hydrogenase expression/ 94.1 0.022 7.6E-07 54.4 2.8 24 62-85 31-54 (221)
403 4edh_A DTMP kinase, thymidylat 94.1 0.031 1.1E-06 54.1 3.8 28 59-86 4-31 (213)
404 2f6r_A COA synthase, bifunctio 94.1 0.024 8.3E-07 57.2 3.2 23 61-83 75-97 (281)
405 2a5j_A RAS-related protein RAB 94.1 0.023 8E-07 53.0 2.9 23 63-85 23-45 (191)
406 3bwd_D RAC-like GTP-binding pr 94.1 0.024 8.1E-07 52.0 2.8 23 63-85 10-32 (182)
407 1a7j_A Phosphoribulokinase; tr 94.1 0.014 4.7E-07 59.4 1.3 25 60-84 4-28 (290)
408 3t5g_A GTP-binding protein RHE 94.0 0.022 7.4E-07 52.4 2.5 22 63-84 8-29 (181)
409 2h57_A ADP-ribosylation factor 94.0 0.018 6.3E-07 53.6 2.1 23 63-85 23-45 (190)
410 2qu8_A Putative nucleolar GTP- 94.0 0.024 8.2E-07 54.8 3.0 22 63-84 31-52 (228)
411 3umf_A Adenylate kinase; rossm 94.0 0.03 1E-06 54.5 3.6 28 58-85 26-53 (217)
412 1zd9_A ADP-ribosylation factor 94.0 0.024 8.2E-07 52.8 2.8 23 63-85 24-46 (188)
413 4dhe_A Probable GTP-binding pr 94.0 0.013 4.4E-07 56.1 1.0 23 63-85 31-53 (223)
414 3dz8_A RAS-related protein RAB 94.0 0.022 7.4E-07 53.2 2.5 23 63-85 25-47 (191)
415 2f7s_A C25KG, RAS-related prot 94.0 0.028 9.7E-07 53.5 3.4 24 63-86 27-50 (217)
416 2bcg_Y Protein YP2, GTP-bindin 94.0 0.022 7.5E-07 53.8 2.5 23 63-85 10-32 (206)
417 2h17_A ADP-ribosylation factor 94.0 0.022 7.6E-07 52.6 2.5 23 63-85 23-45 (181)
418 1x3s_A RAS-related protein RAB 94.0 0.024 8.4E-07 52.5 2.8 23 63-85 17-39 (195)
419 4bas_A ADP-ribosylation factor 94.0 0.025 8.5E-07 52.8 2.9 23 63-85 19-41 (199)
420 2atv_A RERG, RAS-like estrogen 94.0 0.025 8.6E-07 53.0 2.9 23 63-85 30-52 (196)
421 3reg_A RHO-like small GTPase; 94.0 0.025 8.5E-07 52.9 2.8 23 63-85 25-47 (194)
422 3cph_A RAS-related protein SEC 93.9 0.025 8.6E-07 53.5 2.8 23 63-85 22-44 (213)
423 2p5s_A RAS and EF-hand domain 93.9 0.026 8.8E-07 53.1 2.9 23 63-85 30-52 (199)
424 2orv_A Thymidine kinase; TP4A 93.9 0.23 7.7E-06 48.7 9.6 54 188-248 88-150 (234)
425 1ltq_A Polynucleotide kinase; 93.9 0.032 1.1E-06 56.4 3.6 23 62-84 3-25 (301)
426 2ew1_A RAS-related protein RAB 93.9 0.024 8.1E-07 53.9 2.5 23 63-85 28-50 (201)
427 3a8t_A Adenylate isopentenyltr 93.9 0.039 1.3E-06 57.2 4.2 26 60-85 39-64 (339)
428 2aka_B Dynamin-1; fusion prote 93.8 0.025 8.6E-07 56.9 2.8 23 63-85 28-50 (299)
429 2q3h_A RAS homolog gene family 93.8 0.031 1.1E-06 52.4 3.3 23 63-85 22-44 (201)
430 2iwr_A Centaurin gamma 1; ANK 93.8 0.021 7.3E-07 52.3 2.0 23 63-85 9-31 (178)
431 1e4v_A Adenylate kinase; trans 93.8 0.03 1E-06 53.7 3.1 22 63-84 2-23 (214)
432 1njg_A DNA polymerase III subu 93.8 0.0099 3.4E-07 56.8 -0.3 42 190-234 126-167 (250)
433 1ak2_A Adenylate kinase isoenz 93.8 0.035 1.2E-06 54.0 3.6 26 60-85 15-40 (233)
434 2fv8_A H6, RHO-related GTP-bin 93.7 0.026 9E-07 53.5 2.6 23 63-85 27-49 (207)
435 2j1l_A RHO-related GTP-binding 93.7 0.031 1E-06 53.4 3.1 23 63-85 36-58 (214)
436 3c5c_A RAS-like protein 12; GD 93.7 0.03 1E-06 52.2 2.9 23 63-85 23-45 (187)
437 3lv8_A DTMP kinase, thymidylat 93.7 0.035 1.2E-06 54.7 3.3 27 60-86 26-52 (236)
438 1gwn_A RHO-related GTP-binding 93.6 0.028 9.5E-07 53.6 2.5 23 63-85 30-52 (205)
439 2fu5_C RAS-related protein RAB 93.6 0.021 7.2E-07 52.6 1.6 23 63-85 10-32 (183)
440 2fh5_B SR-beta, signal recogni 93.6 0.031 1.1E-06 53.0 2.8 23 63-85 9-31 (214)
441 2b6h_A ADP-ribosylation factor 93.6 0.029 9.9E-07 52.6 2.5 22 63-84 31-52 (192)
442 3zvl_A Bifunctional polynucleo 93.6 0.034 1.2E-06 59.4 3.3 27 58-84 255-281 (416)
443 3cnl_A YLQF, putative uncharac 93.5 0.038 1.3E-06 55.2 3.4 25 62-86 100-124 (262)
444 2p65_A Hypothetical protein PF 93.5 0.034 1.2E-06 51.0 2.8 27 59-85 41-67 (187)
445 2g3y_A GTP-binding protein GEM 93.5 0.039 1.3E-06 53.1 3.3 22 63-84 39-60 (211)
446 3def_A T7I23.11 protein; chlor 93.5 0.035 1.2E-06 55.2 3.0 23 63-85 38-60 (262)
447 2gco_A H9, RHO-related GTP-bin 93.5 0.031 1.1E-06 52.7 2.5 23 63-85 27-49 (201)
448 1sky_E F1-ATPase, F1-ATP synth 93.5 0.041 1.4E-06 59.6 3.7 35 50-85 141-175 (473)
449 3d3q_A TRNA delta(2)-isopenten 93.4 0.039 1.3E-06 57.3 3.4 24 62-85 8-31 (340)
450 3tmk_A Thymidylate kinase; pho 93.4 0.041 1.4E-06 53.4 3.3 29 59-87 3-31 (216)
451 4tmk_A Protein (thymidylate ki 93.4 0.043 1.5E-06 53.1 3.4 27 60-86 2-28 (213)
452 1h65_A Chloroplast outer envel 93.3 0.037 1.3E-06 55.2 3.0 23 63-85 41-63 (270)
453 3ld9_A DTMP kinase, thymidylat 93.3 0.049 1.7E-06 53.2 3.8 28 59-86 19-46 (223)
454 3tqf_A HPR(Ser) kinase; transf 93.3 0.064 2.2E-06 50.2 4.3 35 49-84 5-39 (181)
455 3exa_A TRNA delta(2)-isopenten 93.3 0.049 1.7E-06 55.9 3.9 25 61-85 3-27 (322)
456 2ocp_A DGK, deoxyguanosine kin 93.3 0.046 1.6E-06 53.4 3.6 26 61-86 2-27 (241)
457 2atx_A Small GTP binding prote 93.3 0.036 1.2E-06 51.7 2.6 23 63-85 20-42 (194)
458 3sr0_A Adenylate kinase; phosp 93.3 0.047 1.6E-06 52.6 3.4 23 63-85 2-24 (206)
459 1p5z_B DCK, deoxycytidine kina 93.2 0.031 1.1E-06 55.5 2.1 27 59-85 22-48 (263)
460 2h92_A Cytidylate kinase; ross 93.2 0.042 1.4E-06 52.6 3.0 25 61-85 3-27 (219)
461 4djt_A GTP-binding nuclear pro 93.1 0.02 6.9E-07 54.6 0.7 23 63-85 13-35 (218)
462 3cpj_B GTP-binding protein YPT 93.1 0.043 1.5E-06 52.7 2.9 23 63-85 15-37 (223)
463 1qvr_A CLPB protein; coiled co 93.1 0.1 3.4E-06 61.0 6.5 25 62-86 589-613 (854)
464 2hup_A RAS-related protein RAB 93.0 0.041 1.4E-06 52.0 2.6 23 63-85 31-53 (201)
465 2x77_A ADP-ribosylation factor 93.0 0.029 1E-06 52.1 1.5 22 63-84 24-45 (189)
466 2yc2_C IFT27, small RAB-relate 93.0 0.021 7.3E-07 53.6 0.5 22 63-84 22-43 (208)
467 2hf9_A Probable hydrogenase ni 93.0 0.044 1.5E-06 52.5 2.8 24 62-85 39-62 (226)
468 3crm_A TRNA delta(2)-isopenten 93.0 0.055 1.9E-06 55.8 3.6 24 62-85 6-29 (323)
469 1sxj_D Activator 1 41 kDa subu 92.8 0.02 6.7E-07 59.0 0.1 42 190-234 133-174 (353)
470 2r62_A Cell division protease 92.8 0.017 5.8E-07 57.3 -0.5 29 55-85 40-68 (268)
471 4gzl_A RAS-related C3 botulinu 92.7 0.047 1.6E-06 51.7 2.5 22 63-84 32-53 (204)
472 3q3j_B RHO-related GTP-binding 92.6 0.053 1.8E-06 51.8 2.8 23 63-85 29-51 (214)
473 2j0v_A RAC-like GTP-binding pr 92.6 0.049 1.7E-06 51.6 2.5 23 63-85 11-33 (212)
474 4dcu_A GTP-binding protein ENG 92.6 0.047 1.6E-06 59.0 2.6 54 176-234 88-142 (456)
475 3foz_A TRNA delta(2)-isopenten 92.5 0.076 2.6E-06 54.4 3.8 25 61-85 10-34 (316)
476 2orw_A Thymidine kinase; TMTK, 92.4 0.07 2.4E-06 50.2 3.4 53 190-248 76-137 (184)
477 3eph_A TRNA isopentenyltransfe 92.1 0.077 2.6E-06 56.3 3.5 25 61-85 2-26 (409)
478 1mky_A Probable GTP-binding pr 92.1 0.13 4.5E-06 55.1 5.5 23 63-85 3-25 (439)
479 3n70_A Transport activator; si 92.0 0.084 2.9E-06 47.3 3.2 41 190-233 76-116 (145)
480 1ypw_A Transitional endoplasmi 92.0 0.026 8.9E-07 65.5 -0.3 32 54-85 504-535 (806)
481 4a9a_A Ribosome-interacting GT 92.0 0.093 3.2E-06 55.3 3.9 39 63-101 74-121 (376)
482 1wxq_A GTP-binding protein; st 91.8 0.076 2.6E-06 56.4 3.1 80 146-242 180-262 (397)
483 3gmt_A Adenylate kinase; ssgci 91.8 0.089 3E-06 51.6 3.2 23 63-85 10-32 (230)
484 2chg_A Replication factor C sm 91.7 0.09 3.1E-06 49.3 3.2 42 190-234 102-143 (226)
485 1puj_A YLQF, conserved hypothe 91.7 0.097 3.3E-06 52.8 3.6 26 61-86 120-145 (282)
486 3euj_A Chromosome partition pr 91.7 0.22 7.7E-06 54.1 6.6 71 170-248 377-464 (483)
487 3p32_A Probable GTPase RV1496/ 91.6 0.093 3.2E-06 54.7 3.5 27 59-85 77-103 (355)
488 2x2e_A Dynamin-1; nitration, h 91.5 0.06 2E-06 56.1 1.8 23 63-85 33-55 (353)
489 3th5_A RAS-related C3 botulinu 90.8 0.035 1.2E-06 52.3 0.0 22 63-84 32-53 (204)
490 3syl_A Protein CBBX; photosynt 91.5 0.098 3.3E-06 52.7 3.4 27 59-85 65-91 (309)
491 3r7w_A Gtpase1, GTP-binding pr 91.4 0.13 4.6E-06 52.3 4.3 25 61-85 3-27 (307)
492 3pxi_A Negative regulator of g 91.4 0.38 1.3E-05 55.2 8.6 23 63-85 523-545 (758)
493 2hjg_A GTP-binding protein ENG 91.3 0.08 2.7E-06 56.8 2.7 22 63-84 5-26 (436)
494 1g5t_A COB(I)alamin adenosyltr 91.3 0.17 5.7E-06 48.3 4.5 72 178-251 106-181 (196)
495 1d2n_A N-ethylmaleimide-sensit 91.2 0.12 4E-06 51.4 3.5 26 59-84 62-87 (272)
496 2qgz_A Helicase loader, putati 91.0 0.13 4.3E-06 52.6 3.7 25 61-85 152-176 (308)
497 3l0i_B RAS-related protein RAB 91.0 0.024 8.2E-07 53.3 -1.7 23 63-85 35-57 (199)
498 3gj0_A GTP-binding nuclear pro 91.0 0.07 2.4E-06 51.0 1.6 22 63-84 17-39 (221)
499 4hlc_A DTMP kinase, thymidylat 90.9 0.14 4.9E-06 49.0 3.7 26 61-86 2-27 (205)
500 1f5n_A Interferon-induced guan 90.9 0.094 3.2E-06 58.5 2.7 34 49-85 29-62 (592)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.4e-51 Score=433.61 Aligned_cols=225 Identities=30% Similarity=0.419 Sum_probs=200.8
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++||+++|..+ ++.. .+|+|||+++++||++||+||||||||||+|+|+|+++|+ +|+|.
T Consensus 22 ~~mi~v~~ls~~y~~~------------~~~~-~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~--~G~I~ 86 (366)
T 3tui_C 22 KHMIKLSNITKVFHQG------------TRTI-QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT--EGSVL 86 (366)
T ss_dssp -CCEEEEEEEEEEECS------------SSEE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEE
T ss_pred CceEEEEeEEEEeCCC------------CCCe-EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC--ceEEE
Confidence 3469999999999421 1223 6999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh---h---cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 96 VNEQPMNI---T---QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 96 ~~g~~~~~---~---~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
++|+++.. . ..|+.+|||+|++.+++.+||+||+.++...+ ..+.++.+++++++|+.+||.+.+++++
T Consensus 87 i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~-~~~~~~~~~~v~~lL~~vgL~~~~~~~~---- 161 (366)
T 3tui_C 87 VDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD-NTPKDEVKRRVTELLSLVGLGDKHDSYP---- 161 (366)
T ss_dssp ETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHTCGGGTTCCT----
T ss_pred ECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhcCCh----
Confidence 99999853 1 24678999999999999999999999987764 3356667789999999999999888776
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
.+|||||||||+|||||+.+|++|||||||||||+.++..++++|++++++.|+|||++|||++ .+.++|||+++|++
T Consensus 162 -~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~ 239 (366)
T 3tui_C 162 -SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN 239 (366)
T ss_dssp -TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999998777999999999998 58899999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|++++.|+++++.
T Consensus 240 G~iv~~g~~~ev~ 252 (366)
T 3tui_C 240 GELIEQDTVSEVF 252 (366)
T ss_dssp TEEEECCBHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998764
No 2
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.6e-51 Score=431.62 Aligned_cols=219 Identities=31% Similarity=0.513 Sum_probs=200.8
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++| +.. .+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 3 ~l~~~~l~~~y----------------g~~-~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~ 63 (381)
T 3rlf_A 3 SVQLQNVTKAW----------------GEV-VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT--SGDLFIG 63 (381)
T ss_dssp CEEEEEEEEEE----------------TTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEET
T ss_pred EEEEEeEEEEE----------------CCE-EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC--CeEEEEC
Confidence 58999999999 445 7999999999999999999999999999999999999987 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.+|||+|++.++|.+||+||+.|+.+.+ +.++++.+++++++++.+||.+..++++ .+||||
T Consensus 64 G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGG 137 (381)
T 3rlf_A 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA-GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGG 137 (381)
T ss_dssp TEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT-TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHH
T ss_pred CEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHH
Confidence 999854 334567999999999999999999999998764 3356667789999999999999888776 699999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++.|+|+|++|||++ ++..++||+++|++|+++..|
T Consensus 138 qrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999998767999999999998 589999999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
+++++.
T Consensus 217 ~~~~l~ 222 (381)
T 3rlf_A 217 KPLELY 222 (381)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999875
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=4.6e-51 Score=431.26 Aligned_cols=219 Identities=28% Similarity=0.435 Sum_probs=198.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 4 ~l~i~~ls~~y----------------~~~-~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~--~G~I~i~ 64 (359)
T 3fvq_A 4 ALHIGHLSKSF----------------QNT-PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLS 64 (359)
T ss_dssp CEEEEEEEEEE----------------TTE-EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS--EEEEEET
T ss_pred EEEEEeEEEEE----------------CCE-EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC--CcEEEEC
Confidence 58999999999 445 7999999999999999999999999999999999999987 9999999
Q ss_pred CEeC----Ch-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCc
Q 044112 98 EQPM----NI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRG 172 (610)
Q Consensus 98 g~~~----~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 172 (610)
|+++ .. ...++.+|||+|+..++|.+||+||+.|+.+.+. .+.++.+++++++++.+||++.+++++ .+
T Consensus 65 G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~-~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 138 (359)
T 3fvq_A 65 GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-GRTAQERQRIEAMLELTGISELAGRYP-----HE 138 (359)
T ss_dssp TEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS-CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GG
T ss_pred CEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 9987 22 2345789999999999999999999999865432 244566788999999999999988877 59
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++.|+|||++|||++ ++..+|||+++|++|++
T Consensus 139 LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i 217 (359)
T 3fvq_A 139 LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRI 217 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999998887777999999999998 58899999999999999
Q ss_pred EEEcChhHHH
Q 044112 253 VHHGSLDLLE 262 (610)
Q Consensus 253 v~~g~~~~~~ 262 (610)
+..|+++++.
T Consensus 218 ~~~g~~~el~ 227 (359)
T 3fvq_A 218 LQTASPHELY 227 (359)
T ss_dssp EEEECHHHHH
T ss_pred EEEeCHHHHH
Confidence 9999999874
No 4
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2e-50 Score=411.39 Aligned_cols=218 Identities=31% Similarity=0.493 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 24 ~l~i~~l~~~y----------------~~~-~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~--~G~I~~~ 84 (263)
T 2olj_A 24 MIDVHQLKKSF----------------GSL-EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD--EGEIIID 84 (263)
T ss_dssp SEEEEEEEEEE----------------TTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEET
T ss_pred eEEEEeEEEEE----------------CCE-EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC--CcEEEEC
Confidence 59999999999 344 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCC--h---hcccceEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 044112 98 EQPMN--I---TQFRRISGYVTQDEVLFPLLTVKETLMYSA-RLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSR 171 (610)
Q Consensus 98 g~~~~--~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 171 (610)
|+++. . ..+++.+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||.+..++++ .
T Consensus 85 g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 158 (263)
T 2olj_A 85 GINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR-KWPREKAEAKAMELLDKVGLKDKAHAYP-----D 158 (263)
T ss_dssp TEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----G
T ss_pred CEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCCh-----h
Confidence 99874 1 234567999999999999999999999965 332 2234455678999999999998888776 5
Q ss_pred ccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 172 GISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 172 ~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ ++.++||++++|++|+
T Consensus 159 ~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~~~d~v~~l~~G~ 236 (263)
T 2olj_A 159 SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE-GMTMVVVTHEMG-FAREVGDRVLFMDGGY 236 (263)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999765 999999999997 4788999999999999
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|+++++.
T Consensus 237 i~~~g~~~~~~ 247 (263)
T 2olj_A 237 IIEEGKPEDLF 247 (263)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999998764
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-50 Score=415.15 Aligned_cols=221 Identities=29% Similarity=0.478 Sum_probs=195.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++|. +.. .+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 6 ~~l~i~~ls~~y~---------------~~~-~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~--~G~I~~ 67 (275)
T 3gfo_A 6 YILKVEELNYNYS---------------DGT-HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS--SGRILF 67 (275)
T ss_dssp EEEEEEEEEEECT---------------TSC-EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEE
T ss_pred cEEEEEEEEEEEC---------------CCC-eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC--CeEEEE
Confidence 3699999999992 223 5999999999999999999999999999999999999887 999999
Q ss_pred CCEeCC--h---hcccceEEEEccCCC-CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 97 NEQPMN--I---TQFRRISGYVTQDEV-LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 97 ~g~~~~--~---~~~~~~~~yv~Q~~~-l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
+|+++. . ..+++.+|||+|++. .+..+||+||+.++.... ..+.++.+++++++++.+||.+.+++++
T Consensus 68 ~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (275)
T 3gfo_A 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM-KLPEDEIRKRVDNALKRTGIEHLKDKPT----- 141 (275)
T ss_dssp TTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS-CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----
T ss_pred CCEECCcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCCc-----
Confidence 999983 2 245678999999963 444789999999987653 3355666788999999999999888877
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
.+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++.|+|||++||+++. +.++||++++|++|
T Consensus 142 ~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G 220 (275)
T 3gfo_A 142 HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEG 220 (275)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999999973349999999999984 78899999999999
Q ss_pred eEEEEcChhHHH
Q 044112 251 TVVHHGSLDLLE 262 (610)
Q Consensus 251 ~iv~~g~~~~~~ 262 (610)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (275)
T 3gfo_A 221 RVILQGNPKEVF 232 (275)
T ss_dssp EEEEEECHHHHT
T ss_pred EEEEECCHHHHh
Confidence 999999998864
No 6
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.2e-50 Score=411.40 Aligned_cols=218 Identities=29% Similarity=0.450 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 6 ~l~i~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~--~G~i~~~ 66 (262)
T 1b0u_A 6 KLHVIDLHKRY----------------GGH-EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS--EGAIIVN 66 (262)
T ss_dssp CEEEEEEEEEE----------------TTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEET
T ss_pred eEEEeeEEEEE----------------CCE-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEC
Confidence 59999999999 444 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh----------------hcccceEEEEccCCCCCCCCCHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHcCCccc
Q 044112 98 EQPMNI----------------TQFRRISGYVTQDEVLFPLLTVKETLMYSA-RLRLHVGLNRAKARVSELLKELGLEHV 160 (610)
Q Consensus 98 g~~~~~----------------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~ 160 (610)
|+++.. ..+++.+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||.+.
T Consensus 67 g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~ 145 (262)
T 1b0u_A 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-GLSKHDARERALKYLAKVGIDER 145 (262)
T ss_dssp TEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCCHH
T ss_pred CEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc-CCCHHHHHHHHHHHHHHcCCCch
Confidence 998751 134567999999999999999999999964 332 22344556789999999999988
Q ss_pred -ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH
Q 044112 161 -ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE 239 (610)
Q Consensus 161 -~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~ 239 (610)
+++++ .+|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+
T Consensus 146 ~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~-~~~~ 218 (262)
T 1b0u_A 146 AQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMG-FARH 218 (262)
T ss_dssp HHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEECSCHH-HHHH
T ss_pred hhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHH
Confidence 88776 599999999999999999999999999999999999999999999999765 899999999997 4788
Q ss_pred hcceEEEeeCCeEEEEcChhHHH
Q 044112 240 LFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 240 ~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
+||++++|++|+++..|+++++.
T Consensus 219 ~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 219 VSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HCSEEEEEETTEEEEEECHHHHH
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988764
No 7
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.2e-50 Score=405.01 Aligned_cols=222 Identities=31% Similarity=0.458 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|..+ +..+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 1 ~l~~~~l~~~y~~~------------~~~~-~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~ 65 (235)
T 3tif_A 1 MVKLKNVTKTYKMG------------EEII-YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT--EGEVYID 65 (235)
T ss_dssp CEEEEEEEEEEEET------------TEEE-EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEET
T ss_pred CEEEEEEEEEeCCC------------Ccce-eeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--ceEEEEC
Confidence 47899999999411 1123 6999999999999999999999999999999999999987 9999999
Q ss_pred CEeCCh---hc----ccceEEEEccCCCCCCCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCccc-ccccccC
Q 044112 98 EQPMNI---TQ----FRRISGYVTQDEVLFPLLTVKETLMYSARLRL--HVGLNRAKARVSELLKELGLEHV-ANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~----~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~ 167 (610)
|+++.. .. .++.+|||+|++.+++.+||+||+.++...+. ..+.++..+++.++++.+||.+. +++++
T Consensus 66 g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-- 143 (235)
T 3tif_A 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-- 143 (235)
T ss_dssp TEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG--
T ss_pred CEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh--
Confidence 998743 11 23469999999999999999999999876532 22455667789999999999875 36665
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
.+|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++.|+|||++||+++ +.++||++++|
T Consensus 144 ---~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l 218 (235)
T 3tif_A 144 ---NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYL 218 (235)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEE
Confidence 6999999999999999999999999999999999999999999999997656899999999996 45899999999
Q ss_pred eCCeEEEEcChhHH
Q 044112 248 SKGTVVHHGSLDLL 261 (610)
Q Consensus 248 ~~G~iv~~g~~~~~ 261 (610)
++|+++..++++++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 219 KDGEVEREEKLRGF 232 (235)
T ss_dssp ETTEEEEEEECC--
T ss_pred ECCEEEEEcChhhh
Confidence 99999999988764
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.4e-50 Score=411.76 Aligned_cols=218 Identities=25% Similarity=0.394 Sum_probs=196.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||++.| +.+ .+|+|||+++++||++||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 10 ~~l~~~~l~~~~----------------~~~-~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~ 70 (266)
T 4g1u_C 10 ALLEASHLHYHV----------------QQQ-ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--HGECHL 70 (266)
T ss_dssp CEEEEEEEEEEE----------------TTE-EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS--SCEEEE
T ss_pred ceEEEEeEEEEe----------------CCe-eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEE
Confidence 479999999999 445 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
+|+++.. ...++.++|++|++.+++.+||+||+.++.... ..++.+++++++++.+||.+..++.+ .+|
T Consensus 71 ~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (266)
T 4g1u_C 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY---GGSQDRQALQQVMAQTDCLALAQRDY-----RVL 142 (266)
T ss_dssp TTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS---CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGC
T ss_pred CCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc---CcHHHHHHHHHHHHHcCChhHhcCCc-----ccC
Confidence 9999753 345677999999999888899999999876433 22334578899999999999888877 589
Q ss_pred CHHHhhHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 174 SGGEKRRVSIGVDLVH------DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 174 SgGerqRv~ia~aL~~------~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
||||||||+|||||+. +|++|||||||+|||+.++.++++.|++++++.|+|||++|||++ ++.++||++++|
T Consensus 143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl 221 (266)
T 4g1u_C 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLL 221 (266)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 9999999999999999 999999999999999999999999999998776789999999998 478899999999
Q ss_pred eCCeEEEEcChhHHH
Q 044112 248 SKGTVVHHGSLDLLE 262 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~ 262 (610)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 222 AQGKLVACGTPEEVL 236 (266)
T ss_dssp ETTEEEEEECHHHHC
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999998763
No 9
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.4e-50 Score=410.10 Aligned_cols=218 Identities=21% Similarity=0.354 Sum_probs=193.2
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++| +.+ .+|+|||+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 6 ~~l~i~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~--~G~i~~ 66 (257)
T 1g6h_A 6 EILRTENIVKYF----------------GEF-KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYF 66 (257)
T ss_dssp EEEEEEEEEEEE----------------TTE-EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEE
T ss_pred cEEEEeeeEEEE----------------CCE-eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEEE
Confidence 469999999999 344 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh----hcccceEEEEccCCCCCCCCCHHHHHHHHHHh-cCC-----------CCHHHHHHHHHHHHHHcCCccc
Q 044112 97 NEQPMNI----TQFRRISGYVTQDEVLFPLLTVKETLMYSARL-RLH-----------VGLNRAKARVSELLKELGLEHV 160 (610)
Q Consensus 97 ~g~~~~~----~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~-~~~-----------~~~~~~~~~v~~~l~~lgL~~~ 160 (610)
+|+++.. ...++.+|||+|++.+++.+||+||+.++... +.. ...++.+++++++++.+||++.
T Consensus 67 ~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 146 (257)
T 1g6h_A 67 ENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL 146 (257)
T ss_dssp TTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG
T ss_pred CCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh
Confidence 9998743 12356799999999999999999999987543 111 1223456788999999999988
Q ss_pred ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh
Q 044112 161 ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL 240 (610)
Q Consensus 161 ~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~ 240 (610)
.++++ .+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.++
T Consensus 147 ~~~~~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tvi~vtHd~~-~~~~~ 219 (257)
T 1g6h_A 147 YDRKA-----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK-GITFLIIEHRLD-IVLNY 219 (257)
T ss_dssp TTSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCS-TTGGG
T ss_pred hCCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCHH-HHHHh
Confidence 88877 599999999999999999999999999999999999999999999999754 899999999998 47889
Q ss_pred cceEEEeeCCeEEEEcChhH
Q 044112 241 FDQILLLSKGTVVHHGSLDL 260 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~~~ 260 (610)
||++++|++|++++.|++++
T Consensus 220 ~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 220 IDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CSEEEEEETTEEEEEEESHH
T ss_pred CCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999887
No 10
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=8.8e-50 Score=397.81 Aligned_cols=212 Identities=32% Similarity=0.438 Sum_probs=189.0
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 4 ~l~~~~l~~~y----------------~~~-~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 64 (224)
T 2pcj_A 4 ILRAENIKKVI----------------RGY-EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT--EGKVFLE 64 (224)
T ss_dssp EEEEEEEEEEE----------------TTE-EEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS--EEEEEET
T ss_pred EEEEEeEEEEE----------------CCE-eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEEC
Confidence 59999999999 334 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---h---ccc-ceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 98 EQPMNI---T---QFR-RISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~---~---~~~-~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
|+++.. . .++ +.++||+|++.+++.+||+||+.++...+ ..+.++.+++++++++.+||.+..++++
T Consensus 65 g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 138 (224)
T 2pcj_A 65 GKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM-GKPKKEAKERGEYLLSELGLGDKLSRKP----- 138 (224)
T ss_dssp TEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----
T ss_pred CEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCchhhhCCh-----
Confidence 998743 1 123 67999999999999999999999987543 2234455678999999999998888776
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
.+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++. + ++||++++|++|
T Consensus 139 ~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~-~-~~~d~v~~l~~G 215 (224)
T 2pcj_A 139 YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-GTSIVMVTHEREL-A-ELTHRTLEMKDG 215 (224)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHHH-H-TTSSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEcCCHHH-H-HhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999999999765 8999999999863 5 899999999999
Q ss_pred eEEEEcC
Q 044112 251 TVVHHGS 257 (610)
Q Consensus 251 ~iv~~g~ 257 (610)
++++.|+
T Consensus 216 ~i~~~g~ 222 (224)
T 2pcj_A 216 KVVGEIT 222 (224)
T ss_dssp EEEEEEE
T ss_pred EEEEEee
Confidence 9999886
No 11
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-49 Score=420.72 Aligned_cols=222 Identities=29% Similarity=0.444 Sum_probs=199.7
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++||+++|. +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.
T Consensus 12 ~~~l~~~~l~~~y~---------------g~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~ 73 (355)
T 1z47_A 12 SMTIEFVGVEKIYP---------------GGA-RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT--KGDVW 73 (355)
T ss_dssp CEEEEEEEEEECCT---------------TST-TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEE
T ss_pred CceEEEEEEEEEEc---------------CCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ccEEE
Confidence 45799999999881 223 6999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 96 VNEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 96 ~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
++|+++.. ...++.+|||+|+..++|.+||+||+.|+.+.+ ..+.++.+++++++++.+||++.+++++ .+||
T Consensus 74 i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 147 (355)
T 1z47_A 74 IGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK-RVPKDEMDARVRELLRFMRLESYANRFP-----HELS 147 (355)
T ss_dssp ETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSC
T ss_pred ECCEECCcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCC
Confidence 99999853 334678999999999999999999999987653 2245556788999999999999888876 5999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|+|||++|||++ ++..++|++++|++|+++.
T Consensus 148 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~ 226 (355)
T 1z47_A 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQ 226 (355)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999997666899999999997 5889999999999999999
Q ss_pred EcChhHHH
Q 044112 255 HGSLDLLE 262 (610)
Q Consensus 255 ~g~~~~~~ 262 (610)
.|+++++.
T Consensus 227 ~g~~~~l~ 234 (355)
T 1z47_A 227 FGTPEEVY 234 (355)
T ss_dssp EECHHHHH
T ss_pred EcCHHHHH
Confidence 99998874
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-49 Score=404.48 Aligned_cols=220 Identities=30% Similarity=0.415 Sum_probs=196.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.+
T Consensus 14 ~~l~i~~l~~~y----------------~~~-~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~ 74 (256)
T 1vpl_A 14 GAVVVKDLRKRI----------------GKK-EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS--SGIVTV 74 (256)
T ss_dssp CCEEEEEEEEEE----------------TTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEE
T ss_pred CeEEEEEEEEEE----------------CCE-EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEEE
Confidence 369999999999 344 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh--hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 97 NEQPMNI--TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 97 ~g~~~~~--~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
+|+++.. ...++.+|||+|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++++ .+||
T Consensus 75 ~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 148 (256)
T 1vpl_A 75 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY-ASSSSEIEEMVERATEIAGLGEKIKDRV-----STYS 148 (256)
T ss_dssp TTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCC
T ss_pred CCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHCCCchHhcCCh-----hhCC
Confidence 9998753 345678999999999999999999999976543 2234444577899999999999888876 5999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++||+++ ++..+||++++|++|++++
T Consensus 149 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~ 226 (256)
T 1vpl_A 149 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNML-EVEFLCDRIALIHNGTIVE 226 (256)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCHH-HHTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 5899999999997 4778899999999999999
Q ss_pred EcChhHHHH
Q 044112 255 HGSLDLLEH 263 (610)
Q Consensus 255 ~g~~~~~~~ 263 (610)
.|+++++.+
T Consensus 227 ~g~~~~~~~ 235 (256)
T 1vpl_A 227 TGTVEELKE 235 (256)
T ss_dssp EEEHHHHHH
T ss_pred ecCHHHHHH
Confidence 999887654
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-49 Score=422.17 Aligned_cols=219 Identities=32% Similarity=0.494 Sum_probs=198.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 3 ~l~~~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~ 63 (362)
T 2it1_A 3 EIKLENIVKKF----------------GNF-TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT--SGKIYFD 63 (362)
T ss_dssp CEEEEEEEEES----------------SSS-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEET
T ss_pred EEEEEeEEEEE----------------CCE-EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC--ceEEEEC
Confidence 48999999998 344 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.+|||+|+..++|.+||+||+.|+.+.+ ..+.++.+++++++++.+||.+..++++ .+||||
T Consensus 64 g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGG 137 (362)
T 2it1_A 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR-KAPREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGG 137 (362)
T ss_dssp TEECTTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHH
T ss_pred CEECCcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHH
Confidence 999853 233567999999999999999999999987653 2245556778999999999999888876 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++.|+|+|++|||++ ++..++|++++|++|+++..|
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g 216 (362)
T 2it1_A 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVG 216 (362)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999999999999997666899999999997 588999999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
+++++.
T Consensus 217 ~~~~~~ 222 (362)
T 2it1_A 217 TPDEVY 222 (362)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998875
No 14
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=8.6e-50 Score=422.61 Aligned_cols=219 Identities=30% Similarity=0.466 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 3 ~l~~~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~ 63 (359)
T 2yyz_A 3 SIRVVNLKKYF----------------GKV-KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT--SGEIYFD 63 (359)
T ss_dssp CEEEEEEEEEE----------------TTE-EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEET
T ss_pred EEEEEEEEEEE----------------CCE-EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC--ccEEEEC
Confidence 48999999999 444 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.+|||+|+..++|.+||+||+.|+.+.+ ..++++.+++++++++.+||++..++++ .+||||
T Consensus 64 g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgG 137 (359)
T 2yyz_A 64 DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGG 137 (359)
T ss_dssp TEECTTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHH
T ss_pred CEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHH
Confidence 999853 234577999999999999999999999976532 1223344578999999999999888876 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++.|+|+|++|||++ ++..++|++++|++|+++..|
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g 216 (359)
T 2yyz_A 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYG 216 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999997666899999999997 588999999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
+++++.
T Consensus 217 ~~~~l~ 222 (359)
T 2yyz_A 217 TPDEVY 222 (359)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999875
No 15
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.2e-49 Score=422.02 Aligned_cols=219 Identities=28% Similarity=0.461 Sum_probs=197.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 3 ~l~~~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~ 63 (372)
T 1g29_1 3 GVRLVDVWKVF----------------GEV-TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS--RGQIYIG 63 (372)
T ss_dssp EEEEEEEEEEE----------------TTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS--EEEEEET
T ss_pred EEEEEeEEEEE----------------CCE-EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC--ccEEEEC
Confidence 58999999999 344 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh-------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 044112 98 EQPMNI-------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESS 170 (610)
Q Consensus 98 g~~~~~-------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 170 (610)
|+++.. ...++.+|||+|+..++|.+||+||+.|+.+.+ ..+.++.+++++++++.+||++..++++
T Consensus 64 g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~----- 137 (372)
T 1g29_1 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR-KVPRQEIDQRVREVAELLGLTELLNRKP----- 137 (372)
T ss_dssp TEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----
T ss_pred CEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchHhcCCc-----
Confidence 998632 223567999999999999999999999987654 2245556778999999999999888876
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
.+|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++.|+|+|++|||++ ++..++|++++|++|
T Consensus 138 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G 216 (372)
T 1g29_1 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRG 216 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 5999999999999999999999999999999999999999999999997666899999999997 588999999999999
Q ss_pred eEEEEcChhHHH
Q 044112 251 TVVHHGSLDLLE 262 (610)
Q Consensus 251 ~iv~~g~~~~~~ 262 (610)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~l~ 228 (372)
T 1g29_1 217 VLQQVGSPDEVY 228 (372)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEeCCHHHHH
Confidence 999999999875
No 16
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1e-49 Score=421.93 Aligned_cols=219 Identities=32% Similarity=0.472 Sum_probs=197.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccc--cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVC--ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
+|+++||+++| +.+ . +|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.
T Consensus 3 ~l~i~~l~~~y----------------~~~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~ 63 (353)
T 1oxx_K 3 RIIVKNVSKVF----------------KKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS--TGELY 63 (353)
T ss_dssp CEEEEEEEEEE----------------GGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS--EEEEE
T ss_pred EEEEEeEEEEE----------------CCE-eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC--ceEEE
Confidence 58999999999 334 6 999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 044112 96 VNEQPMNI------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGES 169 (610)
Q Consensus 96 ~~g~~~~~------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 169 (610)
++|+++.. ...++.+|||+|+..++|.+||+||+.|+.+.+ ..+.++.+++++++++.+||++.+++++
T Consensus 64 i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-KMSKEEIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp ETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS-SCCHHHHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred ECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchHhcCCh----
Confidence 99998632 234678999999999999999999999986543 2245556778999999999999888876
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++..++|++++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999997666899999999997 58899999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2e-49 Score=421.67 Aligned_cols=219 Identities=25% Similarity=0.411 Sum_probs=191.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 11 ~l~~~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~i~ 71 (372)
T 1v43_A 11 EVKLENLTKRF----------------GNF-TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT--EGRIYFG 71 (372)
T ss_dssp CEEEEEEEEEE----------------TTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEET
T ss_pred eEEEEEEEEEE----------------CCE-EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC--ceEEEEC
Confidence 59999999999 344 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.+|||+|+..++|.+||+||+.|+.+.+ ..++++.+++++++++.+||.+.+++++ .+||||
T Consensus 72 g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGG 145 (372)
T 1v43_A 72 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK-KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGG 145 (372)
T ss_dssp TEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSS
T ss_pred CEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHH
Confidence 999853 233567999999999999999999999975432 2245556778999999999999888776 699999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||||+|||||+.+|++|||||||||||+..+.++.+.|+++.++.|+|+|++|||++ ++..++|++++|++|+++..|
T Consensus 146 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g 224 (372)
T 1v43_A 146 QRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIG 224 (372)
T ss_dssp CHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999997666899999999997 588999999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
+++++.
T Consensus 225 ~~~~l~ 230 (372)
T 1v43_A 225 SPTEVY 230 (372)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999875
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-49 Score=398.06 Aligned_cols=217 Identities=26% Similarity=0.372 Sum_probs=190.9
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 6 ~l~~~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 66 (240)
T 1ji0_A 6 VLEVQSLHVYY----------------GAI-HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ--KGKIIFN 66 (240)
T ss_dssp EEEEEEEEEEE----------------TTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEET
T ss_pred eEEEEeEEEEE----------------CCe-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CceEEEC
Confidence 69999999999 334 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCc
Q 044112 98 EQPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELG-LEHVANVRIGGESSRG 172 (610)
Q Consensus 98 g~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~ 172 (610)
|+++.. .. .++.+||++|++.+++.+||+||+.++.... ...++.+++++++++.++ |.+..++++ .+
T Consensus 67 g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~ 139 (240)
T 1ji0_A 67 GQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GT 139 (240)
T ss_dssp TEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SS
T ss_pred CEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hh
Confidence 998753 22 2456999999999999999999999864211 123345567889999995 988777766 69
Q ss_pred cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 173 ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 173 LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.++||++++|++|++
T Consensus 140 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i 217 (240)
T 1ji0_A 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNAL-GALKVAHYGYVLETGQI 217 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCHH-HHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999975 5899999999997 47899999999999999
Q ss_pred EEEcChhHHH
Q 044112 253 VHHGSLDLLE 262 (610)
Q Consensus 253 v~~g~~~~~~ 262 (610)
++.|+++++.
T Consensus 218 ~~~g~~~~~~ 227 (240)
T 1ji0_A 218 VLEGKASELL 227 (240)
T ss_dssp EEEEEHHHHH
T ss_pred EEEcCHHHHh
Confidence 9999988753
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.8e-49 Score=414.88 Aligned_cols=215 Identities=28% Similarity=0.454 Sum_probs=193.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ +|+|+|+++++||+++|+||||||||||||+|+|+.+|+ +|+|.++
T Consensus 1 ml~~~~l~~~y----------------~~~--~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~--~G~I~~~ 60 (348)
T 3d31_A 1 MIEIESLSRKW----------------KNF--SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD--SGRILLD 60 (348)
T ss_dssp CEEEEEEEEEC----------------SSC--EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS--EEEEEET
T ss_pred CEEEEEEEEEE----------------CCE--EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC--CcEEEEC
Confidence 47899999998 322 899999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.+|||+|+..++|.+||+||+.|+.+.+.. +++ ++++++++.+||++..++++ .+||||
T Consensus 61 g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~-~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgG 131 (348)
T 3d31_A 61 GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI-KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGG 131 (348)
T ss_dssp TEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC-CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHH
T ss_pred CEECCCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC-CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHH
Confidence 999853 23456799999999999999999999998765321 121 67899999999999888876 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||||+|||||+.+|++|+|||||+|||+..+.++.+.|+++.++.|+|+|++|||++ ++.+++|++++|++|+++..|
T Consensus 132 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g 210 (348)
T 3d31_A 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVG 210 (348)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999998777999999999997 588999999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
+++++.
T Consensus 211 ~~~~~~ 216 (348)
T 3d31_A 211 KPEEIF 216 (348)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998764
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5e-49 Score=396.06 Aligned_cols=214 Identities=29% Similarity=0.439 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| + .+|+|+|+++++ |+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 1 ml~~~~l~~~y----------------~---~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 58 (240)
T 2onk_A 1 MFLKVRAEKRL----------------G---NFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD--RGEVRLN 58 (240)
T ss_dssp CCEEEEEEEEE----------------T---TEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS--EEEEEET
T ss_pred CEEEEEEEEEe----------------C---CEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEC
Confidence 37899999998 2 249999999999 999999999999999999999999887 9999999
Q ss_pred CEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
|+++.. ...++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++++ .+||||
T Consensus 59 g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 130 (240)
T 2onk_A 59 GADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV---ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGG 130 (240)
T ss_dssp TEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHH
T ss_pred CEECCcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc---CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHH
Confidence 998753 234567999999999999999999999865322 12223577899999999998888776 599999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++.|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 131 qkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g 209 (240)
T 2onk_A 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKG 209 (240)
T ss_dssp HHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999997655899999999997 478999999999999999999
Q ss_pred ChhHHH
Q 044112 257 SLDLLE 262 (610)
Q Consensus 257 ~~~~~~ 262 (610)
+++++.
T Consensus 210 ~~~~~~ 215 (240)
T 2onk_A 210 KLKELF 215 (240)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 988764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-48 Score=399.61 Aligned_cols=223 Identities=28% Similarity=0.385 Sum_probs=191.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|.. .....+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 2 ~l~~~~l~~~y~~-----------~~~~~~-~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~--~G~I~~~ 67 (266)
T 2yz2_A 2 RIEVVNVSHIFHR-----------GTPLEK-KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT--SGDVLYD 67 (266)
T ss_dssp CEEEEEEEEEEST-----------TSTTCE-EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEET
T ss_pred EEEEEEEEEEecC-----------CCcccc-ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CcEEEEC
Confidence 5899999999920 000004 6999999999999999999999999999999999999877 9999999
Q ss_pred CEeCChhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCccC
Q 044112 98 EQPMNITQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE--HVANVRIGGESSRGIS 174 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LS 174 (610)
|+++....+++.+|||+|++ .+++.+||+||+.++.... .+.++.+++++++++.+||. +..++++ .+||
T Consensus 68 g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LS 140 (266)
T 2yz2_A 68 GERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF--YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLS 140 (266)
T ss_dssp TEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT--CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSC
T ss_pred CEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc--CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCC
Confidence 99886434567899999995 5667799999999875332 12223346789999999999 8888776 5999
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. +..+||++++|++|++++
T Consensus 141 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~ 218 (266)
T 2yz2_A 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL-GKTVILISHDIET-VINHVDRVVVLEKGKKVF 218 (266)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCCTT-TGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHH-HHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999765 8999999999984 778899999999999999
Q ss_pred EcChhHHHH
Q 044112 255 HGSLDLLEH 263 (610)
Q Consensus 255 ~g~~~~~~~ 263 (610)
.|+++++.+
T Consensus 219 ~g~~~~~~~ 227 (266)
T 2yz2_A 219 DGTRMEFLE 227 (266)
T ss_dssp EEEHHHHHH
T ss_pred eCCHHHHhc
Confidence 999887653
No 22
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.1e-48 Score=401.92 Aligned_cols=221 Identities=27% Similarity=0.361 Sum_probs=189.4
Q ss_pred CceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 15 NQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 15 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
...+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|
T Consensus 18 ~~~~l~~~~l~~~y----------------~~~-~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~--~G~I 78 (279)
T 2ihy_A 18 SHMLIQLDQIGRMK----------------QGK-TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT--SGTV 78 (279)
T ss_dssp -CEEEEEEEEEEEE----------------TTE-EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEE
T ss_pred CCceEEEEeEEEEE----------------CCE-EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--CeEE
Confidence 34479999999999 334 7999999999999999999999999999999999999887 9999
Q ss_pred EECCEeCC--h---hcccceEEEEccCCCC--CCCCCHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCccccccc
Q 044112 95 LVNEQPMN--I---TQFRRISGYVTQDEVL--FPLLTVKETLMYSARLR---LHVGLNRAKARVSELLKELGLEHVANVR 164 (610)
Q Consensus 95 ~~~g~~~~--~---~~~~~~~~yv~Q~~~l--~~~lTv~E~l~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 164 (610)
.++|+++. . ..+++.+|||+|++.+ .+.+||+||+.++.... .....++.+++++++++.+||.+.++++
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 158 (279)
T 2ihy_A 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY 158 (279)
T ss_dssp EETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred EECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC
Confidence 99999875 2 3456789999999764 34579999998853211 0112234457789999999999888887
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE--EEEecCCcHHHHHhcc
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTI--VLTIHQPGFRILELFD 242 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tv--i~~~H~~~~~i~~~~D 242 (610)
+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|| |++|||++ ++.++||
T Consensus 159 ~-----~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~-~~~~~~d 231 (279)
T 2ihy_A 159 I-----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIE-EITANFS 231 (279)
T ss_dssp G-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGG-GCCTTCC
T ss_pred h-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHH-HHHHhCC
Confidence 7 599999999999999999999999999999999999999999999999765 8999 99999997 4778999
Q ss_pred eEEEeeCCeEEEEcChhHH
Q 044112 243 QILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 243 ~v~~L~~G~iv~~g~~~~~ 261 (610)
++++|++|++++.|+++++
T Consensus 232 ~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 232 KILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEEEEETTEEEEEEEHHHH
T ss_pred EEEEEECCEEEEECCHHHH
Confidence 9999999999999998765
No 23
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-47 Score=388.64 Aligned_cols=217 Identities=28% Similarity=0.334 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC--CCCCCceeEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM--IPLRRVSGSVL 95 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~--~~~~~~~G~I~ 95 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+ ++|+ +|+|.
T Consensus 3 ~l~~~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~--~G~I~ 63 (250)
T 2d2e_A 3 QLEIRDLWASI----------------DGE-TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE--RGEIL 63 (250)
T ss_dssp EEEEEEEEEEE----------------TTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE--EEEEE
T ss_pred eEEEEeEEEEE----------------CCE-EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC--ceEEE
Confidence 58999999999 334 799999999999999999999999999999999998 5554 99999
Q ss_pred ECCEeCCh---hc-ccceEEEEccCCCCCCCCCHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHHcCC-cccccccccCC
Q 044112 96 VNEQPMNI---TQ-FRRISGYVTQDEVLFPLLTVKETLMYSARL-R-LHVGLNRAKARVSELLKELGL-EHVANVRIGGE 168 (610)
Q Consensus 96 ~~g~~~~~---~~-~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~-~-~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~ 168 (610)
++|+++.. .. .++.++|++|++.+++.+||+||+.++... . .....++..++++++++.+|| .+..++++
T Consensus 64 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 140 (250)
T 2d2e_A 64 LDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL--- 140 (250)
T ss_dssp ETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT---
T ss_pred ECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc---
Confidence 99998743 22 234589999999999999999999987532 1 111233445678999999999 57788776
Q ss_pred CCCc-cCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cceEEE
Q 044112 169 SSRG-ISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL-FDQILL 246 (610)
Q Consensus 169 ~~~~-LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~-~D~v~~ 246 (610)
.+ |||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .|+|||++||+++. +..+ +|++++
T Consensus 141 --~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~~~-~~~~~~d~v~~ 216 (250)
T 2d2e_A 141 --NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQRI-LNYIQPDKVHV 216 (250)
T ss_dssp --TCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSSGG-GGTSCCSEEEE
T ss_pred --ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCHHH-HHHhcCCEEEE
Confidence 46 999999999999999999999999999999999999999999999864 58999999999974 6667 599999
Q ss_pred eeCCeEEEEcChhH
Q 044112 247 LSKGTVVHHGSLDL 260 (610)
Q Consensus 247 L~~G~iv~~g~~~~ 260 (610)
|++|++++.|+++.
T Consensus 217 l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 217 MMDGRVVATGGPEL 230 (250)
T ss_dssp EETTEEEEEESHHH
T ss_pred EECCEEEEEeCHHH
Confidence 99999999999873
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.3e-47 Score=385.87 Aligned_cols=208 Identities=26% Similarity=0.404 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEecccccccccccccccc-cccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKP-PAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~-~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
+|+++||+++| + .+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.
T Consensus 4 ~l~i~~l~~~y----------------~~~~-~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~--~G~I~- 63 (253)
T 2nq2_C 4 ALSVENLGFYY----------------QAEN-FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI--QGKIE- 63 (253)
T ss_dssp EEEEEEEEEEE----------------TTTT-EEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS--EEEEE-
T ss_pred eEEEeeEEEEe----------------CCCC-eEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEE-
Confidence 59999999999 3 44 7999999999999999999999999999999999999887 99998
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCCcc
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGESSRGI 173 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 173 (610)
.++.++||+|++.+++.+||+||+.++...... ...++.+++++++++.+||.+..++.+ .+|
T Consensus 64 ---------~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (253)
T 2nq2_C 64 ---------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSL 129 (253)
T ss_dssp ---------ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred ---------EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhC
Confidence 246799999999999999999999987532211 112344577899999999999888776 599
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++.|+|||++|||++ ++.++||++++|++|+ +
T Consensus 130 SgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~ 207 (253)
T 2nq2_C 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-F 207 (253)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-E
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-E
Confidence 9999999999999999999999999999999999999999999997655899999999997 4778999999999999 9
Q ss_pred EEcChhHH
Q 044112 254 HHGSLDLL 261 (610)
Q Consensus 254 ~~g~~~~~ 261 (610)
+.|+++++
T Consensus 208 ~~g~~~~~ 215 (253)
T 2nq2_C 208 KFGETRNI 215 (253)
T ss_dssp EEEEHHHH
T ss_pred ecCCHHHH
Confidence 99998765
No 25
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.3e-47 Score=386.88 Aligned_cols=222 Identities=23% Similarity=0.306 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+....+.+|+|.++
T Consensus 20 ~l~~~~l~~~y----------------~~~-~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 20 MLSIKDLHVSV----------------EDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp CEEEEEEEEEE----------------TTE-EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred eEEEEeEEEEE----------------CCE-EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 69999999999 344 7999999999999999999999999999999999995212349999999
Q ss_pred CEeCCh---hcc-cceEEEEccCCCCCCCCCHHHHHHHHHH-h----cCC-CCHHHHHHHHHHHHHHcCCc-cccccccc
Q 044112 98 EQPMNI---TQF-RRISGYVTQDEVLFPLLTVKETLMYSAR-L----RLH-VGLNRAKARVSELLKELGLE-HVANVRIG 166 (610)
Q Consensus 98 g~~~~~---~~~-~~~~~yv~Q~~~l~~~lTv~E~l~~~~~-~----~~~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 166 (610)
|+++.. ... ++.++|++|++.+++.+||+||+.+... . ... .+.++.+++++++++.+||. +..+++++
T Consensus 83 g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 83 GKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred CEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 998742 222 3459999999999999999999987642 1 111 13344457899999999996 56776652
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHh-cceEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILEL-FDQIL 245 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~-~D~v~ 245 (610)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++. +..+ ||+++
T Consensus 163 ----~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~~~-~~~~~~d~v~ 236 (267)
T 2zu0_C 163 ----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQRI-LDYIKPDYVH 236 (267)
T ss_dssp ----TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSGGG-GGTSCCSEEE
T ss_pred ----cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCHHH-HHhhcCCEEE
Confidence 25999999999999999999999999999999999999999999999864 58999999999974 5565 89999
Q ss_pred EeeCCeEEEEcChhHHH
Q 044112 246 LLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 246 ~L~~G~iv~~g~~~~~~ 262 (610)
+|++|++++.|+++++.
T Consensus 237 ~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp EEETTEEEEEECTTHHH
T ss_pred EEECCEEEEEcCHHHHh
Confidence 99999999999998764
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2.8e-47 Score=390.16 Aligned_cols=220 Identities=23% Similarity=0.423 Sum_probs=184.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++|. ..+.+ .+|+|||+++++||+++|+||||||||||||+|+|+++|+ +|+|.+
T Consensus 15 ~~l~~~~l~~~y~-------------~~~~~-~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~--~G~I~~ 78 (271)
T 2ixe_A 15 GLVKFQDVSFAYP-------------NHPNV-QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT--GGKVLL 78 (271)
T ss_dssp CCEEEEEEEECCT-------------TCTTS-CCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEEE
T ss_pred ceEEEEEEEEEeC-------------CCCCc-eeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCEEEE
Confidence 3699999999982 00124 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHHHc--CCccccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNR-----AKARVSELLKEL--GLEHVANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~-----~~~~v~~~l~~l--gL~~~~~~~vg 166 (610)
+|+++.. ..+++.++||+|++.+++ .||+||+.++.... . ..++ ....++++++.+ ||.+..++.+
T Consensus 79 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~- 154 (271)
T 2ixe_A 79 DGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT-P-TMEEITAVAMESGAHDFISGFPQGYDTEVGETG- 154 (271)
T ss_dssp TTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC-C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-
T ss_pred CCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC-C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-
Confidence 9998743 345677999999998887 59999999864211 1 1011 122356778888 7777766665
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++.|+|||++||+++. + ..||++++
T Consensus 155 ----~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~ 228 (271)
T 2ixe_A 155 ----NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILF 228 (271)
T ss_dssp ----TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEE
T ss_pred ----CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEE
Confidence 69999999999999999999999999999999999999999999999865558999999999873 4 46999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|+++..|+++++.
T Consensus 229 l~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 229 LKEGSVCEQGTHLQLM 244 (271)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999998764
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.2e-46 Score=390.85 Aligned_cols=216 Identities=29% Similarity=0.502 Sum_probs=183.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++||+++|+ +.+ .+|+|||+++++||++||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 52 ~~i~~~~vs~~y~---------------~~~-~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~--~G~I~i 113 (306)
T 3nh6_A 52 GRIEFENVHFSYA---------------DGR-ETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS--SGCIRI 113 (306)
T ss_dssp CCEEEEEEEEESS---------------TTC-EEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS--EEEEEE
T ss_pred CeEEEEEEEEEcC---------------CCC-ceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC--CcEEEE
Confidence 3699999999983 234 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg 166 (610)
+|+++.. ..+++.+|||+|++.+|+ .||+||+.++... .. .++++++++..++.+. .++.+|
T Consensus 114 ~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~---~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~ 185 (306)
T 3nh6_A 114 DGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT---AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVG 185 (306)
T ss_dssp TTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT---CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEES
T ss_pred CCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc---CC----HHHHHHHHHHhCcHHHHHhccchhhhHhc
Confidence 9999853 456788999999999886 5999999986421 12 2345556666666543 344453
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+.+|||||||||+|||||+.+|+||||||||||||+.++..+++.|+++. .++|||+++|+++. +. .||+|++
T Consensus 186 -~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~Tvi~itH~l~~-~~-~aD~i~v 260 (306)
T 3nh6_A 186 -ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANRTTIVVAHRLST-VV-NADQILV 260 (306)
T ss_dssp -TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTSEEEEECCSHHH-HH-TCSEEEE
T ss_pred -CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEEcChHH-HH-cCCEEEE
Confidence 5567999999999999999999999999999999999999999999999985 36899999999974 54 5999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|+++..|+++++.+
T Consensus 261 l~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 261 IKDGCIVERGRHEALLS 277 (306)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998754
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.5e-46 Score=379.81 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=184.2
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...++++||+++|. .+.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.
T Consensus 5 ~~~~~~~~l~~~y~--------------~~~~-~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~I~ 67 (247)
T 2ff7_A 5 HHDITFRNIRFRYK--------------PDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE--NGQVL 67 (247)
T ss_dssp CEEEEEEEEEEESS--------------TTSC-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS--EEEEE
T ss_pred cCceeEEEEEEEeC--------------CCCc-ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEE
Confidence 35689999999982 0124 7999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc------
Q 044112 96 VNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG------ 166 (610)
Q Consensus 96 ~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------ 166 (610)
++|+++.. ..+++.+|||+|++.+++ .||+||+.++.. ... +++++++++.+++.+..++...
T Consensus 68 i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 139 (247)
T 2ff7_A 68 IDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP---GMS----VEKVIYAAKLAGAHDFISELREGYNTIV 139 (247)
T ss_dssp ETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT---TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBC
T ss_pred ECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC---CCC----HHHHHHHHHHhChHHHHHhCcchhhhhh
Confidence 99998753 345678999999998887 599999987521 111 3456778888888766554321
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+..+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ + |+|||++||+++. + +.||++++
T Consensus 140 ~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~tviivtH~~~~-~-~~~d~v~~ 215 (247)
T 2ff7_A 140 GEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GRTVIIIAHRLST-V-KNADRIIV 215 (247)
T ss_dssp STTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TSEEEEECSSGGG-G-TTSSEEEE
T ss_pred hCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CCEEEEEeCCHHH-H-HhCCEEEE
Confidence 23457999999999999999999999999999999999999999999999984 4 8999999999974 4 56999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+++++.
T Consensus 216 l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 216 MEKGKIVEQGKHKELL 231 (247)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999988763
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.4e-46 Score=378.41 Aligned_cols=207 Identities=26% Similarity=0.390 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++ .+|+|+|+++++||+++|+||||||||||||+|+|+++| . |+|.++
T Consensus 4 ~l~~~~l~~~---------------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~ 59 (249)
T 2qi9_C 4 VMQLQDVAES---------------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFA 59 (249)
T ss_dssp EEEEEEEEET---------------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEET
T ss_pred EEEEEceEEE---------------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEEC
Confidence 5888988752 479999999999999999999999999999999999875 4 999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGIS 174 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 174 (610)
|+++.. ..+++.++|++|++.+++.+||+||+.++.. ... . +++++++++.+||.+..++.+ .+||
T Consensus 60 g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS 128 (249)
T 2qi9_C 60 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DKT-R--TELLNDVAGALALDDKLGRST-----NQLS 128 (249)
T ss_dssp TEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---STT-C--HHHHHHHHHHTTCGGGTTSBG-----GGCC
T ss_pred CEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cCC-c--HHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 998742 3456779999999999999999999987521 111 1 567889999999998888776 5999
Q ss_pred HHHhhHHHHHHHHHhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 175 GGEKRRVSIGVDLVHDPA-------VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~-------llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
|||||||+||+||+.+|+ +|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+.+++|++++|
T Consensus 129 gGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~-g~tviivtHd~~-~~~~~~d~v~~l 206 (249)
T 2qi9_C 129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ-GLAIVMSSHDLN-HTLRHAHRAWLL 206 (249)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 999999999999999999 99999999999999999999999999755 899999999997 477899999999
Q ss_pred eCCeEEEEcChhHH
Q 044112 248 SKGTVVHHGSLDLL 261 (610)
Q Consensus 248 ~~G~iv~~g~~~~~ 261 (610)
++|++++.|+++++
T Consensus 207 ~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 207 KGGKMLASGRREEV 220 (249)
T ss_dssp ETTEEEEEEEHHHH
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=9.5e-47 Score=380.50 Aligned_cols=216 Identities=27% Similarity=0.467 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|. +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 1 ml~~~~l~~~y~---------------~~~-~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 62 (243)
T 1mv5_A 1 MLSARHVDFAYD---------------DSE-QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT--AGEITID 62 (243)
T ss_dssp CEEEEEEEECSS---------------SSS-CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS--BSCEEET
T ss_pred CEEEEEEEEEeC---------------CCC-ceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CcEEEEC
Confidence 378999999882 224 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc------CC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG------GE 168 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~ 168 (610)
|+++.. ..+++.++||+|++.+++ .||+||+.++... ... +++++++++.+++.+..++... +.
T Consensus 63 g~~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~--~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~ 135 (243)
T 1mv5_A 63 GQPIDNISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG--DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE 135 (243)
T ss_dssp TEESTTTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS--CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST
T ss_pred CEEhhhCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC--CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc
Confidence 998753 345678999999999887 5999999875211 111 3457888999999877654421 23
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ + |+|||++||+++ .+ +.||++++|+
T Consensus 136 ~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~~tvi~vtH~~~-~~-~~~d~v~~l~ 211 (243)
T 1mv5_A 136 RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-GRTTLVIAHRLS-TI-VDADKIYFIE 211 (243)
T ss_dssp TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-TSEEEEECCSHH-HH-HHCSEEEEEE
T ss_pred CcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-CCEEEEEeCChH-HH-HhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999986 4 899999999986 34 5699999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|+++..|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 212 KGQITGSGKHNELV 225 (243)
T ss_dssp TTEECCCSCHHHHH
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=9.9e-46 Score=376.75 Aligned_cols=211 Identities=22% Similarity=0.284 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|..+ .+.+ .+|+|+|++++ ||+++|+||||||||||||+|+|++ |+ +|+|.++
T Consensus 1 ml~~~~l~~~y~~~------------~~~~-~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~--~G~I~~~ 63 (263)
T 2pjz_A 1 MIQLKNVGITLSGK------------GYER-FSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY--SGNIFIN 63 (263)
T ss_dssp CEEEEEEEEEEEEE------------TTEE-EEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC--EEEEEET
T ss_pred CEEEEEEEEEeCCC------------Cccc-eeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC--CcEEEEC
Confidence 47899999999310 0114 79999999999 9999999999999999999999999 87 9999999
Q ss_pred CEeCChhcccceEE-EEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCccCH
Q 044112 98 EQPMNITQFRRISG-YVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSRGISG 175 (610)
Q Consensus 98 g~~~~~~~~~~~~~-yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 175 (610)
|+++.....++.++ |++|++.+ .+||+||+.+....+ . ..+++++++++.+||. +..++++ .+|||
T Consensus 64 g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~-~----~~~~~~~~~l~~~gl~~~~~~~~~-----~~LSg 131 (263)
T 2pjz_A 64 GMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK-G----LDRDLFLEMLKALKLGEEILRRKL-----YKLSA 131 (263)
T ss_dssp TEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT-C----CCHHHHHHHHHHTTCCGGGGGSBG-----GGSCH
T ss_pred CEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc-c----hHHHHHHHHHHHcCCChhHhcCCh-----hhCCH
Confidence 99874311256799 99999887 789999999976543 1 1245688999999998 8888776 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc-eEEEeeCCeEEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD-QILLLSKGTVVH 254 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D-~v~~L~~G~iv~ 254 (610)
||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++ . |||++||+++ ++.++|| ++++|++|++++
T Consensus 132 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~-tviivtHd~~-~~~~~~d~~i~~l~~G~i~~ 206 (263)
T 2pjz_A 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K-EGILVTHELD-MLNLYKEYKAYFLVGNRLQG 206 (263)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S-EEEEEESCGG-GGGGCTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C-cEEEEEcCHH-HHHHhcCceEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999874 2 9999999997 4778999 999999999999
Q ss_pred EcChhHHH
Q 044112 255 HGSLDLLE 262 (610)
Q Consensus 255 ~g~~~~~~ 262 (610)
.|+++++.
T Consensus 207 ~g~~~~l~ 214 (263)
T 2pjz_A 207 PISVSELL 214 (263)
T ss_dssp EEEHHHHH
T ss_pred ecCHHHHH
Confidence 99988764
No 32
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-46 Score=368.69 Aligned_cols=203 Identities=16% Similarity=0.296 Sum_probs=176.1
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...|+++||+++| +. .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.
T Consensus 8 ~~~l~~~~ls~~y----------------~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~--~G~I~ 67 (214)
T 1sgw_A 8 GSKLEIRDLSVGY----------------DK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL--KGEII 67 (214)
T ss_dssp -CEEEEEEEEEES----------------SS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS--EEEEE
T ss_pred CceEEEEEEEEEe----------------CC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CeEEE
Confidence 3579999999998 22 4899999999999999999999999999999999999887 99999
Q ss_pred ECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 96 VNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
++|+++. ..++.++||+|++.+++.+||+||+.++...+.. . .+ +++++++++.+||++. ++++ .+|||
T Consensus 68 ~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~-~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSg 136 (214)
T 1sgw_A 68 YNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K-VN-KNEIMDALESVEVLDL-KKKL-----GELSQ 136 (214)
T ss_dssp ETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C-CC-HHHHHHHHHHTTCCCT-TSBG-----GGSCH
T ss_pred ECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c-hH-HHHHHHHHHHcCCCcC-CCCh-----hhCCH
Confidence 9999875 4567899999999999999999999998654321 1 12 4678899999999887 7665 69999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++..++|+++++ +|+|
T Consensus 137 Gqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999999754 899999999998 477888888755 4554
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.5e-45 Score=371.71 Aligned_cols=216 Identities=27% Similarity=0.433 Sum_probs=180.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
.+|+++||+++|.. +..+ .+|+|+|+++++||+++|+||||||||||||+|+|++++ +|+|.+
T Consensus 16 ~~l~i~~l~~~y~~-------------~~~~-~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~G~I~i 78 (260)
T 2ghi_A 16 VNIEFSDVNFSYPK-------------QTNH-RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKI 78 (260)
T ss_dssp CCEEEEEEEECCTT-------------CCSS-CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC---EEEEEE
T ss_pred CeEEEEEEEEEeCC-------------CCcC-ceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC---CeEEEE
Confidence 46999999999821 1123 699999999999999999999999999999999999863 799999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg 166 (610)
+|+++.. ..+++.++||+|++.+++ .||+||+.++.. ... ++++.++++.+++.+. .++.++
T Consensus 79 ~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~---~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~ 150 (260)
T 2ghi_A 79 GGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL---DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVG 150 (260)
T ss_dssp TTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEES
T ss_pred CCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC---CCC----HHHHHHHHHHhCCHHHHHhcccccccccc
Confidence 9998742 345678999999999886 599999987521 111 2345677777776543 333332
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
..+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ + |+|||++||+++. + +.||++++
T Consensus 151 -~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~-~-~~tviivtH~~~~-~-~~~d~i~~ 225 (260)
T 2ghi_A 151 -NKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR-K-NRTLIIIAHRLST-I-SSAESIIL 225 (260)
T ss_dssp -SSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT-T-TSEEEEECSSGGG-S-TTCSEEEE
T ss_pred -CCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc-C-CCEEEEEcCCHHH-H-HhCCEEEE
Confidence 4567999999999999999999999999999999999999999999999985 4 7999999999974 4 56999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|+++..|+++++.
T Consensus 226 l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 226 LNKGKIVEKGTHKDLL 241 (260)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999998764
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.3e-44 Score=357.27 Aligned_cols=204 Identities=24% Similarity=0.386 Sum_probs=168.5
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|. .+.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 6 ~l~~~~l~~~y~--------------~~~~-~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~ 68 (229)
T 2pze_A 6 EVVMENVTAFWE--------------EGGT-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHS 68 (229)
T ss_dssp EEEEEEEEECSS--------------TTSC-CSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEEC
T ss_pred eEEEEEEEEEeC--------------CCCc-eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--ccEEEEC
Confidence 689999999982 1234 7999999999999999999999999999999999999887 9999999
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCCC
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN-------VRIGGESS 170 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~ 170 (610)
| .++|++|++.+++. ||+||+.++... .. .+++++++.+++.+..+ +.++ +.+
T Consensus 69 g----------~i~~v~q~~~~~~~-tv~enl~~~~~~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~ 128 (229)
T 2pze_A 69 G----------RISFCSQFSWIMPG-TIKENIIFGVSY----DE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGG 128 (229)
T ss_dssp S----------CEEEECSSCCCCSB-CHHHHHHTTSCC----CH----HHHHHHHHHTTCHHHHTTSTTGGGSCBC-TTC
T ss_pred C----------EEEEEecCCcccCC-CHHHHhhccCCc----Ch----HHHHHHHHHhCcHHHHHhCccccccccc-CCC
Confidence 8 38999999998885 999999875311 11 12344555555544332 2232 345
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASL-LKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~-L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
..|||||||||+|||||+.+|++++|||||+|||+.++..+++. ++++. .|+|||++||+++. + ..||++++|++
T Consensus 129 ~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~~~-~-~~~d~v~~l~~ 204 (229)
T 2pze_A 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILILHE 204 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHCSEEEEEET
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCChHH-H-HhCCEEEEEEC
Confidence 79999999999999999999999999999999999999999997 45553 37899999999863 4 56999999999
Q ss_pred CeEEEEcChhHHH
Q 044112 250 GTVVHHGSLDLLE 262 (610)
Q Consensus 250 G~iv~~g~~~~~~ 262 (610)
|++++.|+++++.
T Consensus 205 G~i~~~g~~~~~~ 217 (229)
T 2pze_A 205 GSSYFYGTFSELQ 217 (229)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999988764
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=387.38 Aligned_cols=216 Identities=23% Similarity=0.354 Sum_probs=184.4
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++||+++|.. +.+ .+|+|||+++++||+++|+||||||||||||+|+|+++ + +|+|.+
T Consensus 18 ~~i~~~~l~~~y~~--------------~~~-~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~--~G~I~i 79 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE--------------GGN-AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T--EGEIQI 79 (390)
T ss_dssp CCEEEEEEEEESSS--------------SSC-CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E--EEEEEE
T ss_pred CeEEEEEEEEEecC--------------CCe-EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C--CeEEEE
Confidence 46999999999831 234 79999999999999999999999999999999999986 4 899999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccC------
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGG------ 167 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------ 167 (610)
+|++++. ..+++.+|||+|++.+++ +||+||+.+.. . ..+++++++++.++|.+..+++...
T Consensus 80 ~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~----~----~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~ 150 (390)
T 3gd7_A 80 DGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA----A----HSDQEIWKVADEVGLRSVIEQFPGKLDFVLV 150 (390)
T ss_dssp SSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC----C----SCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC
T ss_pred CCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc----c----cCHHHHHHHHHHhCCHHHHhhcccccccccc
Confidence 9998753 345678999999999997 69999996421 1 1235678899999999887776531
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+....|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++. .++|+|+++||++ ....+||+++|
T Consensus 151 ~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~e--~~~~aDri~vl 226 (390)
T 3gd7_A 151 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARIE--AMLECDQFLVI 226 (390)
T ss_dssp TTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSSG--GGTTCSEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCHH--HHHhCCEEEEE
Confidence 1223499999999999999999999999999999999999999999999863 4799999999985 35679999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|+++..|+++++.+
T Consensus 227 ~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 227 EENKVRQYDSILELYH 242 (390)
T ss_dssp ETTEEEEESSHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999998753
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=8.2e-44 Score=357.65 Aligned_cols=207 Identities=25% Similarity=0.402 Sum_probs=165.7
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
+|+++||+++|.. +.+ .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.++
T Consensus 3 ~l~~~~l~~~y~~--------------~~~-~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~ 65 (237)
T 2cbz_A 3 SITVRNATFTWAR--------------SDP-PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV--EGHVAIK 65 (237)
T ss_dssp CEEEEEEEEESCT--------------TSC-CSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE--EEEEEEC
T ss_pred eEEEEEEEEEeCC--------------CCC-ceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEEC
Confidence 5899999999820 134 7999999999999999999999999999999999999876 9999999
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHH---HHHHcCCccc-ccccccCCCCCcc
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSE---LLKELGLEHV-ANVRIGGESSRGI 173 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~-~~~~vg~~~~~~L 173 (610)
| .++||+|++.+ +.+||+||+.++... ..+. .+++.+ +.+.+++.+. .++.+ +..+.+|
T Consensus 66 g----------~i~~v~Q~~~~-~~~tv~enl~~~~~~----~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~L 128 (237)
T 2cbz_A 66 G----------SVAYVPQQAWI-QNDSLRENILFGCQL----EEPY-YRSVIQACALLPDLEILPSGDRTEI-GEKGVNL 128 (237)
T ss_dssp S----------CEEEECSSCCC-CSEEHHHHHHTTSCC----CTTH-HHHHHHHTTCHHHHTTSTTGGGSEE-STTSBCC
T ss_pred C----------EEEEEcCCCcC-CCcCHHHHhhCcccc----CHHH-HHHHHHHHhhHHHHHhccccccccc-cCCCCCC
Confidence 8 38999999865 578999999885321 1111 111111 2223333211 11222 2345799
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLK---YMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~---~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+ +++ .|+|||++||+++. + ..||++++|++|
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~~-~-~~~d~v~~l~~G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMSY-L-PQVDVIIVMSGG 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCSTT-G-GGSSEEEEEETT
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChHH-H-HhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999995 443 38999999999974 4 579999999999
Q ss_pred eEEEEcChhHHH
Q 044112 251 TVVHHGSLDLLE 262 (610)
Q Consensus 251 ~iv~~g~~~~~~ 262 (610)
+++..|+++++.
T Consensus 205 ~i~~~g~~~~~~ 216 (237)
T 2cbz_A 205 KISEMGSYQELL 216 (237)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEeCCHHHHh
Confidence 999999998764
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.5e-43 Score=397.78 Aligned_cols=218 Identities=25% Similarity=0.440 Sum_probs=184.9
Q ss_pred EEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 19 IRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 19 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
|+++||+++|+. ++++ .+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.+||
T Consensus 342 i~~~~v~~~y~~-------------~~~~-~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~--~G~i~~~g 405 (595)
T 2yl4_A 342 LEFKNVHFAYPA-------------RPEV-PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA--SGTISLDG 405 (595)
T ss_dssp EEEEEEEEECSS-------------CTTS-EEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS--EEEEEETT
T ss_pred EEEEEEEEEeCC-------------CCCC-ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CcEEEECC
Confidence 999999999931 1123 6999999999999999999999999999999999999887 99999999
Q ss_pred EeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 044112 99 QPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIGGE 168 (610)
Q Consensus 99 ~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~ 168 (610)
+++.. ..+++.++||+|++.+++. ||+||+.++...+ .+..+++++++++.+++.+. .|+.+| +
T Consensus 406 ~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~-~ 479 (595)
T 2yl4_A 406 HDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP----SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG-E 479 (595)
T ss_dssp EETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST----TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCS-S
T ss_pred EEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc----cccCHHHHHHHHHHcCCHHHHHhCccccccccc-C
Confidence 99753 4567789999999999875 9999999864211 01123567888888887643 466664 4
Q ss_pred CCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 169 SSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.+.+||||||||++|||||+.+|++++|||||||||+.++..+.+.|+++. + |+|+|+++|+++. + +.||++++|+
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~-~-~~~d~i~~l~ 555 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM-D-GRTVLVIAHRLST-I-KNANMVAVLD 555 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH-T-TSEEEEECCCHHH-H-HHSSEEEEEE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHh-c-CCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 568999999999999999999999999999999999999999999999986 3 7999999999873 4 5699999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|+++..|+++++.
T Consensus 556 ~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 556 QGKITEYGKHEELL 569 (595)
T ss_dssp TTEEEEEECSCC--
T ss_pred CCEEEEECCHHHHH
Confidence 99999999998764
No 38
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.8e-43 Score=394.43 Aligned_cols=217 Identities=27% Similarity=0.440 Sum_probs=186.1
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++||+++|+. +++ .+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 340 ~~i~~~~v~~~y~~--------------~~~-~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~ 402 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG--------------KEK-PALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD--SGSICL 402 (582)
T ss_pred CeEEEEEEEEEcCC--------------CCc-cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CCEEEE
Confidence 46999999999931 124 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc-------ccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA-------NVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg 166 (610)
||+++.. ..+++.++||+|++.+++. ||+||+.++.. +. ..+++++++++.+|+.+.. |+.+|
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~ 475 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---GE---YTREQIEQAARQAHAMEFIENMPQGLDTVIG 475 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---CC---CCHHHHHHHHHHCCCHHHHHhCcccccchhc
Confidence 9998743 4567889999999999875 99999998631 11 1135577888888887544 34454
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+.+||||||||++|||||+.+|++++|||||||||+.++..+.+.|+++. + |+|+|+++|+++. + +.||++++
T Consensus 476 -~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~-~-~~~d~i~~ 550 (582)
T 3b5x_A 476 -ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-K-NKTVLVIAHRLST-I-EQADEILV 550 (582)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-C-CCEEEEEecCHHH-H-HhCCEEEE
Confidence 4568999999999999999999999999999999999999999999999985 3 8999999999973 4 57999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+++++.
T Consensus 551 l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 551 VDEGEIIERGRHADLL 566 (582)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999998864
No 39
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.8e-43 Score=393.93 Aligned_cols=218 Identities=25% Similarity=0.414 Sum_probs=186.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|++++|+. +++ .+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 340 ~~i~~~~v~~~y~~--------------~~~-~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~--~G~i~~ 402 (582)
T 3b60_A 340 GDLEFRNVTFTYPG--------------REV-PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID--EGHILM 402 (582)
T ss_dssp CCEEEEEEEECSSS--------------SSC-CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS--EEEEEE
T ss_pred CcEEEEEEEEEcCC--------------CCC-ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC--CCeEEE
Confidence 35999999999820 114 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc-------ccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA-------NVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg 166 (610)
||+++.. ..+++.++||+|++.+++. ||+||+.++.. ...+ +++++++++.+++.+.. ++.+|
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~--~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~ 475 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART--EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIG 475 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT--SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC--CCCC----HHHHHHHHHHcCCHHHHHhcccccccccc
Confidence 9999753 4567789999999999885 99999998631 1111 34577788888886543 45554
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+.+||||||||++|||||+.+|++++|||||||||+.++..+.+.|+++. + |+|+|+++|+++. + +.||++++
T Consensus 476 -~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~-~-~~~d~i~~ 550 (582)
T 3b60_A 476 -ENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-K-NRTSLVIAHRLST-I-EQADEIVV 550 (582)
T ss_dssp -TTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-T-TSEEEEECSCGGG-T-TTCSEEEE
T ss_pred -CCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-C-CCEEEEEeccHHH-H-HhCCEEEE
Confidence 4568999999999999999999999999999999999999999999999985 3 8999999999974 4 67999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|++++.|+++++.+
T Consensus 551 l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 551 VEDGIIVERGTHSELLA 567 (582)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEecCHHHHHH
Confidence 99999999999988753
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=6.5e-43 Score=394.18 Aligned_cols=217 Identities=29% Similarity=0.462 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|++++|+. +.+ .+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 338 ~~i~~~~v~~~y~~--------------~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~ 400 (578)
T 4a82_A 338 GRIDIDHVSFQYND--------------NEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT--SGQILI 400 (578)
T ss_dssp CCEEEEEEEECSCS--------------SSC-CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS--EEEEEE
T ss_pred CeEEEEEEEEEcCC--------------CCC-cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC--CcEEEE
Confidence 46999999999831 223 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||+++.. ..+|+.+|||+|++.+++. ||+||+.++.. ..+ ++++.++++..++.+ -.++.+|
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~---~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP---TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS---SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC---CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhc
Confidence 9998753 4567889999999999986 99999987521 112 234556666666543 3455554
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+.+||||||||++|||||+.+|++++|||||||||+.++..+.+.|+++. .++|+|+++|+++. + +.||++++
T Consensus 473 -~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~i~~ 547 (578)
T 4a82_A 473 -ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRLST-I-THADKIVV 547 (578)
T ss_dssp -GGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSGGG-T-TTCSEEEE
T ss_pred -cCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEE
Confidence 5567999999999999999999999999999999999999999999999884 37899999999984 4 66999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|++++.|+++++.+
T Consensus 548 l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 548 IENGHIVETGTHRELIA 564 (578)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998753
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-43 Score=394.55 Aligned_cols=217 Identities=29% Similarity=0.440 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|++++|+. +.+ .+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 340 ~~i~~~~v~~~y~~--------------~~~-~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~--~G~i~i 402 (587)
T 3qf4_A 340 GSVSFENVEFRYFE--------------NTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE--RGRVEV 402 (587)
T ss_dssp CCEEEEEEEECSSS--------------SSC-CSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS--EEEEEE
T ss_pred CcEEEEEEEEEcCC--------------CCC-cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC--CcEEEE
Confidence 36999999999831 233 7999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-------ccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-------VANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg 166 (610)
||+++.. .++|+.++||+|++.+++. ||+||+.++.. ..+. +++.+.++..++.+ -.++.+|
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE---DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS---SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC---CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 9998753 4567889999999999976 99999987532 1122 23344444444432 3455554
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+.+||||||||++|||||+.+|++|+||||||+||+.++.++.+.|+++. .|+|+|+++|+++. ...||++++
T Consensus 475 -~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~--~~~~d~i~v 549 (587)
T 3qf4_A 475 -RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKIPT--ALLADKILV 549 (587)
T ss_dssp -SSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCHHH--HTTSSEEEE
T ss_pred -CCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecChHH--HHhCCEEEE
Confidence 5678999999999999999999999999999999999999999999999974 48999999999973 468999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|++++.|+++++.+
T Consensus 550 l~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 550 LHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998754
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.2e-43 Score=394.30 Aligned_cols=216 Identities=27% Similarity=0.449 Sum_probs=181.7
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++||+++|+ +.+ .+|+|+|+++++||++||+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 353 ~~i~~~~v~~~y~---------------~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~--~G~i~~ 414 (598)
T 3qf4_B 353 GEIEFKNVWFSYD---------------KKK-PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD--RGQILV 414 (598)
T ss_dssp CCEEEEEEECCSS---------------SSS-CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS--EEEEEE
T ss_pred CeEEEEEEEEECC---------------CCC-ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC--CeEEEE
Confidence 3699999999982 233 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-------ANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg 166 (610)
||+++.. ..+|+.++||+|++.+++. ||+||+.++.. ..++ ++++++++..++.+. .++.+|
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 486 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNP---GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLT 486 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSST---TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCH
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCC---CCCH----HHHHHHHHHhCCHHHHHhccccccchhc
Confidence 9998743 4577889999999999875 99999987521 1122 234555555555433 344443
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+.+||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++. .|+|+|+++|+++. + +.||++++
T Consensus 487 -~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-~-~~~d~i~~ 561 (598)
T 3qf4_B 487 -DNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLNT-I-KNADLIIV 561 (598)
T ss_dssp -HHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTTH-H-HHCSEEEE
T ss_pred -CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEE
Confidence 4457899999999999999999999999999999999999999999999985 38999999999984 5 56999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|++++.|+++++.+
T Consensus 562 l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 562 LRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp ECSSSEEECSCHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998753
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.1e-41 Score=349.47 Aligned_cols=200 Identities=24% Similarity=0.403 Sum_probs=155.0
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++||++.. + .+|+|+|+++++||+++|+||||||||||||+|+|+++|+ +|+|.+
T Consensus 39 ~~l~~~~l~~~~------------------~-~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~ 97 (290)
T 2bbs_A 39 DSLSFSNFSLLG------------------T-PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKH 97 (290)
T ss_dssp -----------C------------------C-CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE--EEEEEC
T ss_pred ceEEEEEEEEcC------------------c-eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEE
Confidence 358888888742 2 6899999999999999999999999999999999999876 999999
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccc-------ccccCCC
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVAN-------VRIGGES 169 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~ 169 (610)
+| .++|++|++.+++. ||+||+. +. .. .. .+++++++.+++.+..+ +.++ ..
T Consensus 98 ~g----------~i~~v~Q~~~l~~~-tv~enl~-~~--~~--~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~ 156 (290)
T 2bbs_A 98 SG----------RISFCSQNSWIMPG-TIKENII-GV--SY--DE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EG 156 (290)
T ss_dssp CS----------CEEEECSSCCCCSS-BHHHHHH-TT--CC--CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC----
T ss_pred CC----------EEEEEeCCCccCcc-cHHHHhh-Cc--cc--ch----HHHHHHHHHhChHHHHHhccccccchhc-Cc
Confidence 98 38999999998885 9999997 32 11 11 12344556666654322 2222 23
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLL-KYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L-~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.+ ++++ .|+|||++||+++. + ..||++++|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~~~-~-~~~d~i~~l~ 232 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKMEH-L-KKADKILILH 232 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCHHH-H-HHSSEEEEEE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCHHH-H-HcCCEEEEEE
Confidence 5799999999999999999999999999999999999999999974 5553 38999999999863 4 5699999999
Q ss_pred CCeEEEEcChhHHH
Q 044112 249 KGTVVHHGSLDLLE 262 (610)
Q Consensus 249 ~G~iv~~g~~~~~~ 262 (610)
+|+++..|+++++.
T Consensus 233 ~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 233 EGSSYFYGTFSELQ 246 (290)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999998764
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-41 Score=412.84 Aligned_cols=219 Identities=27% Similarity=0.476 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||+++|+. +++. ++|+|+|++|+|||.+||+||||||||||+++|.|+++|. +|+|.+|
T Consensus 1076 ~I~f~nVsf~Y~~-------------~~~~-~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~--~G~I~iD 1139 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPE-------------RPEI-EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL--GGEIFID 1139 (1321)
T ss_dssp CEEEEEEEECCTT-------------SCSS-CSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS--SSEEEET
T ss_pred eEEEEEEEEeCCC-------------CCCC-ccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC--CCEEEEC
Confidence 6999999999942 1233 6999999999999999999999999999999999999887 9999999
Q ss_pred CEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------ccccccccC
Q 044112 98 EQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-------HVANVRIGG 167 (610)
Q Consensus 98 g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~ 167 (610)
|.++.. +.+|++++|||||+.+|+. |++|||.|+.. + .+..++++.++++..++. +-.|+.||
T Consensus 1140 G~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~--~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg- 1212 (1321)
T 4f4c_A 1140 GSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---P--SSVTMAQVEEAARLANIHNFIAELPEGFETRVG- 1212 (1321)
T ss_dssp TEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---T--TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET-
T ss_pred CEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---C--CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec-
Confidence 999853 6789999999999999987 99999987632 1 111234577777777764 34678886
Q ss_pred CCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe
Q 044112 168 ESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL 247 (610)
Q Consensus 168 ~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L 247 (610)
+.+..||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. .|+|+|+++|.++. ...||+|++|
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLsT--i~~aD~I~Vl 1288 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLNT--VMNADCIAVV 1288 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSST--TTTCSEEEEE
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHHH--HHhCCEEEEE
Confidence 5678999999999999999999999999999999999999999999999864 48999999999984 5789999999
Q ss_pred eCCeEEEEcChhHHHH
Q 044112 248 SKGTVVHHGSLDLLEH 263 (610)
Q Consensus 248 ~~G~iv~~g~~~~~~~ 263 (610)
++|+++++|+++++.+
T Consensus 1289 d~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1289 SNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSSEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999874
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=5.3e-40 Score=400.31 Aligned_cols=217 Identities=27% Similarity=0.419 Sum_probs=188.5
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|++++|+. .+++ .+|+|+|+++++||.+||+||||||||||+++|.|.++|. +|+|.+
T Consensus 414 g~I~~~nvsF~Y~~-------------~~~~-~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~--~G~I~i 477 (1321)
T 4f4c_A 414 GDITVENVHFTYPS-------------RPDV-PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL--KGKITI 477 (1321)
T ss_dssp CCEEEEEEEECCSS-------------STTS-CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS--EEEEEE
T ss_pred CcEEEEEeeeeCCC-------------CCCC-ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccc--cCcccC
Confidence 36999999999942 1234 7999999999999999999999999999999999999877 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-------cccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-------HVANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg 166 (610)
||+++.. +.+|+.+|||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++. +-.||.||
T Consensus 478 dG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~---~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vG 549 (1321)
T 4f4c_A 478 DGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKE---GIT----REEMVAACKMANAEKFIKTLPNGYNTLVG 549 (1321)
T ss_dssp TTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT---TCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEES
T ss_pred CCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhcc---cch----HHHHHHHHHHccchhHHHcCCCCCccEec
Confidence 9999753 5688899999999999986 99999998731 112 34566666666543 45678886
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..||||||||++||||++++|+||+||||||+||+.+.+.+.+.|+++. +|+|+|+++|+++. .+.||+|++
T Consensus 550 -e~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrls~--i~~aD~Iiv 624 (1321)
T 4f4c_A 550 -DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRLST--IRNADLIIS 624 (1321)
T ss_dssp -SSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCTTT--TTTCSEEEE
T ss_pred -CCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh--CCCEEEEEcccHHH--HHhCCEEEE
Confidence 5678999999999999999999999999999999999999999999999986 48999999999974 688999999
Q ss_pred eeCCeEEEEcChhHHH
Q 044112 247 LSKGTVVHHGSLDLLE 262 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~ 262 (610)
|++|++++.|+.+++.
T Consensus 625 l~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 625 CKNGQVVEVGDHRALM 640 (1321)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred eeCCeeeccCCHHHHH
Confidence 9999999999999875
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=4e-39 Score=391.63 Aligned_cols=218 Identities=29% Similarity=0.480 Sum_probs=182.8
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++|++++|+. ++.. .+|+|+|+++++||.+||+||||||||||+++|+|+++|+ +|+|.+
T Consensus 386 g~i~~~~v~~~y~~-------------~~~~-~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~--~G~i~i 449 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPS-------------RKEV-QILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL--DGMVSI 449 (1284)
T ss_dssp CCEEEEEEEECCSS-------------TTSC-CSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS--EEEEEE
T ss_pred CeEEEEEEEEEcCC-------------CCCC-cceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEEE
Confidence 36999999999941 1223 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------ccccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGL-------EHVANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg 166 (610)
+|+++.. ..+|+.+|||+|++.+++. ||+||+.++.. ..+.+ ++++.++..++ .+-.++.+|
T Consensus 450 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~~ 521 (1284)
T 3g5u_A 450 DGQDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE---DVTMD----EIEKAVKEANAYDFIMKLPHQFDTLVG 521 (1284)
T ss_dssp TTEEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS---SCCHH----HHHHHHHHTTCHHHHHHSTTGGGCCCS
T ss_pred CCEEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC---CCCHH----HHHHHHHHhCcHHHHHhcccccccccc
Confidence 9998743 5677889999999999986 99999999742 11222 23334444333 234566675
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+.+||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. .|+|+|+++|+++. + ..+|+|++
T Consensus 522 -~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~~-i-~~~d~i~v 596 (1284)
T 3g5u_A 522 -ERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRLST-V-RNADVIAG 596 (1284)
T ss_dssp -SSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCHHH-H-TTCSEEEE
T ss_pred -CCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHHH-H-HcCCEEEE
Confidence 5678999999999999999999999999999999999999999999998874 48999999999973 4 56999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|++++.|+++++.+
T Consensus 597 l~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 597 FDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp CSSSCCCCEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998753
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.4e-39 Score=389.35 Aligned_cols=220 Identities=28% Similarity=0.485 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
-.|+++||+++|+. ++.. .+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+
T Consensus 1029 g~i~~~~v~~~y~~-------------~~~~-~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~--~G~I~i 1092 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPT-------------RPSI-PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM--AGSVFL 1092 (1284)
T ss_dssp CCEEEEEEEBCCSC-------------GGGC-CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS--EEEEES
T ss_pred CcEEEEEEEEECCC-------------CCCC-eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC--CCEEEE
Confidence 35999999999941 1223 6999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-------ccccccccc
Q 044112 97 NEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGL-------EHVANVRIG 166 (610)
Q Consensus 97 ~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg 166 (610)
||+++.. ..+|+.++|||||+.+++ .||+||+.++...+ ..+. +.+.+.++..++ .+-.|+.+|
T Consensus 1093 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~-~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSR-VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp SSSCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSC-CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred CCEEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCC-CCCH----HHHHHHHHHhCcHHHHHhCccccccccC
Confidence 9998753 457888999999998876 59999998753211 1122 233444444444 344567775
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
+.+..|||||||||+|||||+.+|+||+|||||+|||+.+...+.+.|++.. .|+|||+++|+++. + ..||||++
T Consensus 1167 -e~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l~~-i-~~~dri~v 1241 (1284)
T 3g5u_A 1167 -DKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRLST-I-QNADLIVV 1241 (1284)
T ss_dssp -TTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCTTG-G-GSCSEEEE
T ss_pred -CCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCHHH-H-HcCCEEEE
Confidence 5678999999999999999999999999999999999999999999998853 48999999999984 5 66999999
Q ss_pred eeCCeEEEEcChhHHHH
Q 044112 247 LSKGTVVHHGSLDLLEH 263 (610)
Q Consensus 247 L~~G~iv~~g~~~~~~~ 263 (610)
|++|++++.|+++++.+
T Consensus 1242 l~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1242 IQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EETBEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998753
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.2e-38 Score=357.27 Aligned_cols=207 Identities=27% Similarity=0.310 Sum_probs=180.3
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...++++|+++.+ +. ..|+++|+++++||++||+||||||||||||+|+|+++|+ +|+|.
T Consensus 355 ~~~l~~~~l~~~~----------------~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~ 414 (607)
T 3bk7_A 355 ETLVEYPRLVKDY----------------GS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKVE 414 (607)
T ss_dssp CEEEEECCEEEEC----------------SS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BSCCC
T ss_pred ceEEEEeceEEEe----------------cc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC--ceEEE
Confidence 4679999999887 22 3689999999999999999999999999999999999887 89987
Q ss_pred ECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 96 VNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+ .+.++|++|+....+.+||.|++....... ....++++++++.+||.+.+++.+ .+|||
T Consensus 415 ~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-----~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 474 (607)
T 3bk7_A 415 W----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-----LNSNFYKTELLKPLGIIDLYDRNV-----EDLSG 474 (607)
T ss_dssp C----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-----HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCH
T ss_pred E----------eeEEEEEecCccCCCCCcHHHHHHhhhccC-----CCHHHHHHHHHHHcCCchHhcCCh-----hhCCH
Confidence 5 245899999988878899999987641111 112356889999999998888877 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC--CeEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK--GTVV 253 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv 253 (610)
||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++.|+|||++|||++ .+..+||++++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999997667899999999998 48889999999986 8888
Q ss_pred EEcChhHHHH
Q 044112 254 HHGSLDLLEH 263 (610)
Q Consensus 254 ~~g~~~~~~~ 263 (610)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988764
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.3e-38 Score=352.13 Aligned_cols=207 Identities=27% Similarity=0.315 Sum_probs=179.2
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...++++|+++.+ +. ..|+++|+++++||++||+||||||||||+|+|+|+++|+ +|+|.
T Consensus 285 ~~~l~~~~l~~~~----------------~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~i~ 344 (538)
T 1yqt_A 285 ETLVTYPRLVKDY----------------GS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT--EGKIE 344 (538)
T ss_dssp CEEEEECCEEEEE----------------TT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS--BCCCC
T ss_pred CeEEEEeeEEEEE----------------CC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CeEEE
Confidence 4579999999988 22 3689999999999999999999999999999999999876 89987
Q ss_pred ECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 96 VNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
+ ...++|++|+....+.+||.|++........ ..+++++++++.+|+.+..++++ ..|||
T Consensus 345 ~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 404 (538)
T 1yqt_A 345 W----------DLTVAYKPQYIKADYEGTVYELLSKIDASKL-----NSNFYKTELLKPLGIIDLYDREV-----NELSG 404 (538)
T ss_dssp C----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-----TCHHHHHHTTTTTTCGGGTTSBG-----GGCCH
T ss_pred E----------CceEEEEecCCcCCCCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCChhhhcCCh-----hhCCH
Confidence 5 2358999999887788999998875411110 11356788999999988888777 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC--CeEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK--GTVV 253 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv 253 (610)
||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++.|.|||++|||++ ++..+||++++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEe
Confidence 99999999999999999999999999999999999999999997656899999999998 58899999999996 7888
Q ss_pred EEcChhHHHH
Q 044112 254 HHGSLDLLEH 263 (610)
Q Consensus 254 ~~g~~~~~~~ 263 (610)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988654
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-37 Score=347.29 Aligned_cols=208 Identities=25% Similarity=0.305 Sum_probs=177.0
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
...++++|+++.+ +. ..|+++|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.
T Consensus 267 ~~~l~~~~l~~~~----------------~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~ 326 (538)
T 3ozx_A 267 KTKMKWTKIIKKL----------------GD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD--EGSVT 326 (538)
T ss_dssp CEEEEECCEEEEE----------------TT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--BCCEE
T ss_pred cceEEEcceEEEE----------------CC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CcEEE
Confidence 4568999999888 22 3578889999999999999999999999999999999987 99998
Q ss_pred ECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH
Q 044112 96 VNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG 175 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg 175 (610)
++| +.++|++|+......+||+||+.+...... . .....++++++.+||.+.+++.+ .+|||
T Consensus 327 ~~~---------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~--~~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 388 (538)
T 3ozx_A 327 PEK---------QILSYKPQRIFPNYDGTVQQYLENASKDAL--S--TSSWFFEEVTKRLNLHRLLESNV-----NDLSG 388 (538)
T ss_dssp SSC---------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT--C--TTSHHHHHTTTTTTGGGCTTSBG-----GGCCH
T ss_pred ECC---------eeeEeechhcccccCCCHHHHHHHhhhhcc--c--hhHHHHHHHHHHcCCHHHhcCCh-----hhCCH
Confidence 764 347999999777778899999987422111 1 12345788999999998888877 59999
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC--CeEE
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK--GTVV 253 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv 253 (610)
||||||+||+||+.+|++|||||||+|||+.++.++++.|++++++.|+|||++|||++ ++..+||||++|++ |...
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999998777999999999998 58899999999986 5666
Q ss_pred EEcChhHHH
Q 044112 254 HHGSLDLLE 262 (610)
Q Consensus 254 ~~g~~~~~~ 262 (610)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 677765543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-36 Score=341.53 Aligned_cols=192 Identities=22% Similarity=0.302 Sum_probs=164.9
Q ss_pred ccccceeEEEeCc-----eEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCC
Q 044112 49 CILKNVNCEARPG-----EIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLL 123 (610)
Q Consensus 49 ~iL~~vs~~i~~G-----e~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~l 123 (610)
.+++|+|+++++| |+++|+||||||||||+|+|+|+++|+ +|+. +. +..++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC--CCcC------cc----CCcEEEecccccccCCc
Confidence 5789999999999 789999999999999999999999887 7752 21 34589999997766678
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCC
Q 044112 124 TVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGL 203 (610)
Q Consensus 124 Tv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgL 203 (610)
||+|++.... +... ...+.++++++.++|.+.+++.+ .+|||||||||+||++|+.+|++|+|||||+||
T Consensus 429 tv~e~~~~~~--~~~~---~~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gL 498 (608)
T 3j16_B 429 TVRQLFFKKI--RGQF---LNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498 (608)
T ss_dssp BHHHHHHHHC--SSTT---TSHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTC
T ss_pred cHHHHHHHHh--hccc---ccHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 9999875432 2111 11345778999999999888877 599999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC--CeEEEEcChhHHHH
Q 044112 204 DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK--GTVVHHGSLDLLEH 263 (610)
Q Consensus 204 D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~--G~iv~~g~~~~~~~ 263 (610)
|+.++..++++|++++++.|+|||++|||++ ++..++||+++|++ |+++..|+++++..
T Consensus 499 D~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 499 DSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLT 559 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhh
Confidence 9999999999999987666999999999998 58899999999996 89999999988754
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.2e-36 Score=339.67 Aligned_cols=183 Identities=28% Similarity=0.369 Sum_probs=152.7
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE---------EECCEeCCh---h--cccceEEEEc
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV---------LVNEQPMNI---T--QFRRISGYVT 114 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I---------~~~g~~~~~---~--~~~~~~~yv~ 114 (610)
.+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++ .++|.++.. . ..+..+++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~--~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~ 182 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN--LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKP 182 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC--TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC--CCccccccchhhheeCCEehhhhhhhhhhhhcceEEee
Confidence 4899999 99999999999999999999999999999887 7885 456665421 1 1223578999
Q ss_pred cCCCCCC---CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCC
Q 044112 115 QDEVLFP---LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDP 191 (610)
Q Consensus 115 Q~~~l~~---~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p 191 (610)
|.....+ ..||+|++... . .+++++++++.+||++..++.+ .+|||||||||+||+||+.+|
T Consensus 183 q~~~~~~~~~~~tv~e~l~~~-----~-----~~~~~~~~L~~lgL~~~~~~~~-----~~LSGGekQRvaIAraL~~~P 247 (607)
T 3bk7_A 183 QYVDLLPKAVKGKVRELLKKV-----D-----EVGKFEEVVKELELENVLDREL-----HQLSGGELQRVAIAAALLRKA 247 (607)
T ss_dssp SCGGGGGGTCCSBHHHHHHHT-----C-----CSSCHHHHHHHTTCTTGGGSBG-----GGCCHHHHHHHHHHHHHHSCC
T ss_pred chhhhchhhccccHHHHhhhh-----H-----HHHHHHHHHHHcCCCchhCCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 8743322 23999998631 0 1245788999999999888887 599999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 192 AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 192 ~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
++|||||||+|||+.++..+++.|+++++ .|+|||++|||++ .+..++|++++|+++.
T Consensus 248 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 248 HFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 99999999999999999999999999975 5899999999997 4788999999998653
No 53
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.4e-35 Score=338.74 Aligned_cols=203 Identities=20% Similarity=0.289 Sum_probs=169.7
Q ss_pred CCCceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee
Q 044112 13 RKNQYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG 92 (610)
Q Consensus 13 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G 92 (610)
+.....|...|++++| +.+ .+|+|+|+++++||+++|+||||||||||||+|+| |
T Consensus 430 ~~~~~~L~~~~ls~~y----------------g~~-~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G 484 (986)
T 2iw3_A 430 EDEGEDLCNCEFSLAY----------------GAK-ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------G 484 (986)
T ss_dssp CSSSCEEEEEEEEEEE----------------TTE-EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------T
T ss_pred ccccceeEEeeEEEEE----------------CCE-EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------C
Confidence 3445568888999999 445 79999999999999999999999999999999995 2
Q ss_pred EEEECCEeCChhcccceEEEEccCC-CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 044112 93 SVLVNEQPMNITQFRRISGYVTQDE-VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESS 170 (610)
Q Consensus 93 ~I~~~g~~~~~~~~~~~~~yv~Q~~-~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 170 (610)
+| +|.+.. .. ..++|++|+. .+++.+||.|++.+ ... . . +++++++++.+||. +..++++
T Consensus 485 ~i--~g~~~~-~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~~~-~-~----~~~v~~~L~~lgL~~~~~~~~~----- 546 (986)
T 2iw3_A 485 QV--DGFPTQ-EE--CRTVYVEHDIDGTHSDTSVLDFVFE--SGV-G-T----KEAIKDKLIEFGFTDEMIAMPI----- 546 (986)
T ss_dssp CS--TTCCCT-TT--SCEEETTCCCCCCCTTSBHHHHHHT--TCS-S-C----HHHHHHHHHHTTCCHHHHHSBG-----
T ss_pred Cc--CCCccc-cc--eeEEEEcccccccccCCcHHHHHHH--hhc-C-H----HHHHHHHHHHcCCChhhhcCCc-----
Confidence 22 344331 11 2368999984 67889999999976 111 1 1 56788999999995 6778777
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
.+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|+|||++|||++ .+.++||++++|++|
T Consensus 547 ~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl~-~l~~~adrii~L~~G 621 (986)
T 2iw3_A 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDSV-FLDNVCEYIINYEGL 621 (986)
T ss_dssp GGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCHH-HHHHHCSEEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999987 3889999999997 488999999999999
Q ss_pred eEE-EEcChhHHHH
Q 044112 251 TVV-HHGSLDLLEH 263 (610)
Q Consensus 251 ~iv-~~g~~~~~~~ 263 (610)
+++ +.|+++++.+
T Consensus 622 ~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 622 KLRKYKGNFTEFVK 635 (986)
T ss_dssp EEEEEESCHHHHHH
T ss_pred eeecCCCCHHHHHh
Confidence 997 7899987654
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.6e-36 Score=334.11 Aligned_cols=200 Identities=26% Similarity=0.316 Sum_probs=159.7
Q ss_pred ceeEEE-EeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE
Q 044112 16 QYRIRT-KKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV 94 (610)
Q Consensus 16 ~~~l~~-~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I 94 (610)
++..+. +||+++| +.+..+|+|+| ++++||+++|+||||||||||||+|+|+++|+ +|++
T Consensus 18 ~~~~~~~~~ls~~y----------------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~--~G~~ 78 (538)
T 1yqt_A 18 SHMEQLEEDCVHRY----------------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN--LCGD 78 (538)
T ss_dssp ------CCCEEEEC----------------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTT
T ss_pred cCChhHhcCcEEEE----------------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCcc
Confidence 334555 6899888 22214899999 99999999999999999999999999999887 7875
Q ss_pred ---------EECCEeCCh---h--cccceEEEEccCCCCCCC---CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Q 044112 95 ---------LVNEQPMNI---T--QFRRISGYVTQDEVLFPL---LTVKETLMYSARLRLHVGLNRAKARVSELLKELGL 157 (610)
Q Consensus 95 ---------~~~g~~~~~---~--~~~~~~~yv~Q~~~l~~~---lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL 157 (610)
.++|.++.. . ..+..+++++|+....+. .|+.|++... +..++++++++.+||
T Consensus 79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~----------~~~~~~~~~l~~lgl 148 (538)
T 1yqt_A 79 NDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA----------DETGKLEEVVKALEL 148 (538)
T ss_dssp CCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH----------CSSSCHHHHHHHTTC
T ss_pred CcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh----------hHHHHHHHHHHHcCC
Confidence 356655421 1 112357899997544332 3899987531 012457889999999
Q ss_pred cccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHH
Q 044112 158 EHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRI 237 (610)
Q Consensus 158 ~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i 237 (610)
.+..++++ .+|||||||||+||+||+.+|++|+|||||++||+.++..+++.|+++++ .|+|||++||+++ .+
T Consensus 149 ~~~~~~~~-----~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~~-~~ 221 (538)
T 1yqt_A 149 ENVLEREI-----QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLA-VL 221 (538)
T ss_dssp TTTTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCHH-HH
T ss_pred ChhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HH
Confidence 98888877 59999999999999999999999999999999999999999999999976 5899999999997 58
Q ss_pred HHhcceEEEeeCCe
Q 044112 238 LELFDQILLLSKGT 251 (610)
Q Consensus 238 ~~~~D~v~~L~~G~ 251 (610)
.++||++++|++|.
T Consensus 222 ~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 222 DYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHCSEEEEEEEET
T ss_pred HHhCCEEEEEcCcc
Confidence 88999999998653
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.6e-35 Score=336.63 Aligned_cols=205 Identities=23% Similarity=0.348 Sum_probs=139.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHH---------------------HHHHCCCCCC-----CceeEEEECCEeCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLL---------------------DILAGMIPLR-----RVSGSVLVNEQPMN 102 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL---------------------~~L~g~~~~~-----~~~G~I~~~g~~~~ 102 (610)
.+|+|||+++++||++||+||||||||||+ ++++|+..|+ ...|.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 699999999999999999999999999998 8888887765 12467777776543
Q ss_pred hhcccceEEEEccCCC-------------------CCCCCCHHHHHHHHHHhcCCCC-HHHHH------HHHHHHHHHcC
Q 044112 103 ITQFRRISGYVTQDEV-------------------LFPLLTVKETLMYSARLRLHVG-LNRAK------ARVSELLKELG 156 (610)
Q Consensus 103 ~~~~~~~~~yv~Q~~~-------------------l~~~lTv~E~l~~~~~~~~~~~-~~~~~------~~v~~~l~~lg 156 (610)
. ..++.+++|+|... .++.+||+||+.+......... ....+ ....++++.+|
T Consensus 112 ~-~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 112 R-NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHTT
T ss_pred c-cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 2 12233455554332 3467899999988543321110 00001 11124588899
Q ss_pred Cccc-ccccccCCCCCccCHHHhhHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 157 LEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDPA--VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 157 L~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
|.+. +++++ .+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|+++++ .|.|||++|||+
T Consensus 191 L~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~ 264 (670)
T 3ux8_A 191 LDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE 264 (670)
T ss_dssp CTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHH-TTCEEEEECCCH
T ss_pred CchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH
Confidence 9865 57766 5999999999999999999998 9999999999999999999999999975 599999999998
Q ss_pred cHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 234 GFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 234 ~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
+ ....||++++| ++|++++.|+++++.
T Consensus 265 ~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 D--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp H--HHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred H--HHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 6 34679999999 899999999998764
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.5e-35 Score=340.09 Aligned_cols=207 Identities=22% Similarity=0.368 Sum_probs=162.7
Q ss_pred ceeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE
Q 044112 16 QYRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL 95 (610)
Q Consensus 16 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~ 95 (610)
..+|+++|++++|.. +.+ .+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.
T Consensus 669 ~~mL~v~nLs~~Y~g--------------~~~-~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~--sG~I~ 731 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPG--------------TSK-PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT--SGEVY 731 (986)
T ss_dssp SEEEEEEEEEECCTT--------------CSS-CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS--EEEEE
T ss_pred CceEEEEeeEEEeCC--------------CCc-eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEE
Confidence 356999999998820 124 7999999999999999999999999999999999999887 99999
Q ss_pred ECCEeCChhcccceEEEEccCCCC----CCCCCHHHHHHHHHHhc-----------------------------------
Q 044112 96 VNEQPMNITQFRRISGYVTQDEVL----FPLLTVKETLMYSARLR----------------------------------- 136 (610)
Q Consensus 96 ~~g~~~~~~~~~~~~~yv~Q~~~l----~~~lTv~E~l~~~~~~~----------------------------------- 136 (610)
++|. ..++|++|+... ....|++|++.+.....
T Consensus 732 ~~~~--------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~ 803 (986)
T 2iw3_A 732 THEN--------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIA 803 (986)
T ss_dssp ECTT--------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEE
T ss_pred EcCc--------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhh
Confidence 9863 137888886521 12357777765431100
Q ss_pred -----------------------------------------------------------------CCCCHHHHHHHHHHH
Q 044112 137 -----------------------------------------------------------------LHVGLNRAKARVSEL 151 (610)
Q Consensus 137 -----------------------------------------------------------------~~~~~~~~~~~v~~~ 151 (610)
.+......+++++++
T Consensus 804 ~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~ 883 (986)
T 2iw3_A 804 GIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEH 883 (986)
T ss_dssp EEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHH
Confidence 000000113568899
Q ss_pred HHHcCCcc-c-ccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEE
Q 044112 152 LKELGLEH-V-ANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLT 229 (610)
Q Consensus 152 l~~lgL~~-~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~ 229 (610)
++.+||.+ . .++++ ++|||||||||+||++|+.+|++|+|||||+|||+.+...+++.|+++ |.|||++
T Consensus 884 Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiI 954 (986)
T 2iw3_A 884 CSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIII 954 (986)
T ss_dssp HHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEE
T ss_pred HHHcCCCchhhcCCCc-----cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEE
Confidence 99999975 3 46665 599999999999999999999999999999999999999999988653 5699999
Q ss_pred ecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 230 IHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 230 ~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
|||++ .+.++||++++|++|+++..|+
T Consensus 955 SHD~e-~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 955 THSAE-FTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CSCHH-HHTTTCCEEECCBTTBCCC---
T ss_pred ECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99987 4778999999999999987764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.7e-33 Score=321.02 Aligned_cols=196 Identities=26% Similarity=0.407 Sum_probs=150.3
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHH----------------------CCCCCCCceeEEEECCEeCChhc-
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILA----------------------GMIPLRRVSGSVLVNEQPMNITQ- 105 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~----------------------g~~~~~~~~G~I~~~g~~~~~~~- 105 (610)
.+|+|||++|++||++||+||||||||||+++|. |+.. ..|.|.++|.++....
T Consensus 336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~---~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH---LDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG---CSEEEECCSSCSCSSTT
T ss_pred cccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc---cCceeEeccccCCCCCC
Confidence 6899999999999999999999999999998764 2222 2478888887763100
Q ss_pred --c-----------------------------------------cceEEEEccCCCCCC---------------------
Q 044112 106 --F-----------------------------------------RRISGYVTQDEVLFP--------------------- 121 (610)
Q Consensus 106 --~-----------------------------------------~~~~~yv~Q~~~l~~--------------------- 121 (610)
. .+..|++.|+..+++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 0 001234444333322
Q ss_pred -----------CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHHHHHHHHHh
Q 044112 122 -----------LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRVSIGVDLVH 189 (610)
Q Consensus 122 -----------~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~ 189 (610)
.+||+||+.+.... ...+++.+.++.+||.. ..++++ .+|||||||||+|||||+.
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFASI-------PKIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTTC-------HHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHHS
T ss_pred eecCCCHHHHhhCCHHHHHHHHHHh-------hhHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHHHhh
Confidence 47999999875321 12345667888999964 345554 6999999999999999999
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhH
Q 044112 190 DP---AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDL 260 (610)
Q Consensus 190 ~p---~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~ 260 (610)
+| ++|+|||||+|||+.++..++++|+++++ .|+|||++|||++. .+.||++++| ++|++++.|++++
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~~~--~~~~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH--HTTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCHHH--HHhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence 87 49999999999999999999999999975 49999999999963 4779999999 8999999999988
Q ss_pred HH
Q 044112 261 LE 262 (610)
Q Consensus 261 ~~ 262 (610)
+.
T Consensus 638 ~~ 639 (670)
T 3ux8_A 638 VA 639 (670)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.1e-33 Score=313.17 Aligned_cols=188 Identities=27% Similarity=0.358 Sum_probs=145.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE-----------EECCEeCCh---hcccce--EEE
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV-----------LVNEQPMNI---TQFRRI--SGY 112 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I-----------~~~g~~~~~---~~~~~~--~~y 112 (610)
..|++++ .+++||++||+||||||||||||+|+|+++|+ +|+| .+.|.++.. ....+. ..+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~--~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 168 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPN--LGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAII 168 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC--TTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEE
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCC--CceEecccchhhhhheecChhhhhhhhHHHHHhhhhhh
Confidence 4577777 58999999999999999999999999999987 8987 233332211 011111 223
Q ss_pred EccCCCC------CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHH
Q 044112 113 VTQDEVL------FPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVD 186 (610)
Q Consensus 113 v~Q~~~l------~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 186 (610)
.+|.... -+..++.+++.... ++..++++++++.+||.+..++.+ .+|||||||||+||+|
T Consensus 169 ~~~~~~~~~~~~~~~~~~v~~~l~~~~--------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 169 KPQYVDNIPRAIKGPVQKVGELLKLRM--------EKSPEDVKRYIKILQLENVLKRDI-----EKLSGGELQRFAIGMS 235 (608)
T ss_dssp ECCCTTTHHHHCSSSSSHHHHHHHHHC--------CSCHHHHHHHHHHHTCTGGGGSCT-----TTCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhcchhhHHHHHHhhhh--------hhHHHHHHHHHHHcCCcchhCCCh-----HHCCHHHHHHHHHHHH
Confidence 3443211 12235666554321 112357889999999999988887 5999999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEE
Q 044112 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 187 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++..++|++++|++|..++
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 9999999999999999999999999999999975 5899999999998 5889999999999876554
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=3.9e-33 Score=310.57 Aligned_cols=174 Identities=24% Similarity=0.309 Sum_probs=140.6
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE-----------EECCEeCCh---hcc--cceEEEEccC----CC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV-----------LVNEQPMNI---TQF--RRISGYVTQD----EV 118 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I-----------~~~g~~~~~---~~~--~~~~~yv~Q~----~~ 118 (610)
++||++||+||||||||||||+|+|+++|+ +|+| .++|+++.. ... ...+....|. +.
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~--~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPN--FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCCC--TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 589999999999999999999999999887 8988 577776531 111 1123444443 23
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeC
Q 044112 119 LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDE 198 (610)
Q Consensus 119 l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDE 198 (610)
++. .||+|++... +.+++++++++.+|+.+..++.+ .+|||||||||+||+||+.+|++|+|||
T Consensus 101 ~~~-~~v~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~Qrv~iA~aL~~~p~illlDE 164 (538)
T 3ozx_A 101 FLK-GTVNEILTKI----------DERGKKDEVKELLNMTNLWNKDA-----NILSGGGLQRLLVAASLLREADVYIFDQ 164 (538)
T ss_dssp TCC-SBHHHHHHHH----------CCSSCHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred hcc-CcHHHHhhcc----------hhHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 333 4888865421 11235778999999999888887 5999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEE
Q 044112 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVV 253 (610)
Q Consensus 199 PtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv 253 (610)
||+|||+.++..+.+.|++++ + |+|||+++|+++ ++..+||++++|++|...
T Consensus 165 Pts~LD~~~~~~l~~~l~~l~-~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 165 PSSYLDVRERMNMAKAIRELL-K-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHHC-T-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred CcccCCHHHHHHHHHHHHHHh-C-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 999999999999999999995 4 899999999997 588999999999876543
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=1.6e-30 Score=300.61 Aligned_cols=199 Identities=28% Similarity=0.437 Sum_probs=150.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHH-HHCCC-------CC----------------CCcee-------EEEEC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDI-LAGMI-------PL----------------RRVSG-------SVLVN 97 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~-L~g~~-------~~----------------~~~~G-------~I~~~ 97 (610)
..|+|||++|++||++||+|+||||||||++. |+|.+ ++ .+.+| .|.++
T Consensus 511 ~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vd 590 (842)
T 2vf7_A 511 NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVD 590 (842)
T ss_dssp TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEEC
T ss_pred cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEEC
Confidence 36999999999999999999999999999996 76543 22 12367 78999
Q ss_pred CEeCChh-------------ccc---------ceEEEEcc----------------------CCCCCC------------
Q 044112 98 EQPMNIT-------------QFR---------RISGYVTQ----------------------DEVLFP------------ 121 (610)
Q Consensus 98 g~~~~~~-------------~~~---------~~~~yv~Q----------------------~~~l~~------------ 121 (610)
|+++... ..+ +..||.++ +-.+++
T Consensus 591 q~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~ 670 (842)
T 2vf7_A 591 QKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGT 670 (842)
T ss_dssp SSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTC
T ss_pred CeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCc
Confidence 9876311 011 11122221 111222
Q ss_pred --------------------CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhH
Q 044112 122 --------------------LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRR 180 (610)
Q Consensus 122 --------------------~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqR 180 (610)
.+|+.|++.|... ....+++.++|+.+||... .++.+ ..||||||||
T Consensus 671 r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~-------~~~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQR 738 (842)
T 2vf7_A 671 RYNAETLEVEYRGKNIADVLALTVDEAHDFFAD-------ESAIFRALDTLREVGLGYLRLGQPA-----TELSGGEAQR 738 (842)
T ss_dssp CBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT-------SHHHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHH
T ss_pred ccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc-------chHHHHHHHHHHHcCCCcccccCCc-----ccCCHHHHHH
Confidence 2355555444211 1123468899999999873 45555 6999999999
Q ss_pred HHHHHHHHhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCe
Q 044112 181 VSIGVDLVHD---PAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGT 251 (610)
Q Consensus 181 v~ia~aL~~~---p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~ 251 (610)
|+||++|+.+ |++|+|||||+|||+.+...+++.|+++++ .|.|||+++|+++ .+ +.||++++| ++|+
T Consensus 739 v~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~ 815 (842)
T 2vf7_A 739 IKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-AGNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGR 815 (842)
T ss_dssp HHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCS
T ss_pred HHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCE
Confidence 9999999996 699999999999999999999999999975 5899999999997 35 889999999 6899
Q ss_pred EEEEcChhHHH
Q 044112 252 VVHHGSLDLLE 262 (610)
Q Consensus 252 iv~~g~~~~~~ 262 (610)
+++.|+++++.
T Consensus 816 Iv~~g~~~el~ 826 (842)
T 2vf7_A 816 LVAQGTPAEVA 826 (842)
T ss_dssp EEEEECHHHHT
T ss_pred EEEEcCHHHHH
Confidence 99999998753
No 61
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=6.8e-30 Score=297.68 Aligned_cols=199 Identities=25% Similarity=0.447 Sum_probs=154.1
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHH---------HHHHCCCCCC----Cce------eEEEECCEeCChh-----
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLL---------DILAGMIPLR----RVS------GSVLVNEQPMNIT----- 104 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL---------~~L~g~~~~~----~~~------G~I~~~g~~~~~~----- 104 (610)
..|+|||+++++||+++|+||||||||||+ +.+.+...+. ..+ +.+.+++.++...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 579999999999999999999999999997 4555543221 112 3456665554210
Q ss_pred --------c-------------------------------ccceEEEEccCCCCCC------------------------
Q 044112 105 --------Q-------------------------------FRRISGYVTQDEVLFP------------------------ 121 (610)
Q Consensus 105 --------~-------------------------------~~~~~~yv~Q~~~l~~------------------------ 121 (610)
. ..+..|++.++..++|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 0022477877776655
Q ss_pred --------CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhCC-
Q 044112 122 --------LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDP- 191 (610)
Q Consensus 122 --------~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p- 191 (610)
.+||.|++.|.... ...+++.++|+.+||... .+.+ +.+|||||||||+||+||+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~-------~~~~~~~~~L~~vGL~~~~lgq~-----~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI-------PSIKRTLQVLHDVGLGYVKLGQP-----ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC-------HHHHHHHHHHHHTTGGGSBTTCC-----STTCCHHHHHHHHHHHHHTSCCC
T ss_pred cCCHHHHhhCCHHHHHHHHhcc-------hhHHHHHHHHHHcCCchhhccCC-----ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36888888875321 223567889999999753 2333 4699999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 192 --AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 192 --~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
++|||||||+|||+.+...+++.|+++++ .|.|||+++|+++ ..+.||+|++| ++|++++.|+++++.
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 79999999999999999999999999975 5899999999996 34679999999 899999999999875
No 62
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=2e-30 Score=300.28 Aligned_cols=199 Identities=25% Similarity=0.414 Sum_probs=154.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHH-CCC---------CCC---Ccee------EEEECCEeCCh--h---
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILA-GMI---------PLR---RVSG------SVLVNEQPMNI--T--- 104 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~-g~~---------~~~---~~~G------~I~~~g~~~~~--~--- 104 (610)
..|+|||++|++||+++|+|+||||||||+++|. |.+ .++ ...| .|.++|.++.. .
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccc
Confidence 4699999999999999999999999999999853 211 122 1234 58899887631 0
Q ss_pred --------cc---------cceEEEEccCCCCC----------------------C------------------------
Q 044112 105 --------QF---------RRISGYVTQDEVLF----------------------P------------------------ 121 (610)
Q Consensus 105 --------~~---------~~~~~yv~Q~~~l~----------------------~------------------------ 121 (610)
.. .+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhcc
Confidence 00 12357777743221 1
Q ss_pred --------CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHHHHHHHHHhCC-
Q 044112 122 --------LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRVSIGVDLVHDP- 191 (610)
Q Consensus 122 --------~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p- 191 (610)
.+||.|++.|.... . ..+++.++++.+||.. ..++.+ ..|||||||||+||++|+.+|
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~~-----~--~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~ 865 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFASI-----P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRSN 865 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCSC-----H--HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCCC
T ss_pred CCCHHHhhhcCHHHHHHHHhcc-----h--hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 46788888764221 1 1234578999999987 566665 599999999999999999875
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 192 --AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 192 --~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
++|||||||+|||+.++..+++.|+++++ .|.|||+++|+++. .+.||++++| ++|++++.|+++++.
T Consensus 866 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~--i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 866 GRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNLDV--IKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp SCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH--HTTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH--HHhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999975 58999999999863 4789999999 689999999998764
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.96 E-value=6.6e-30 Score=296.87 Aligned_cols=199 Identities=24% Similarity=0.396 Sum_probs=151.3
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHH-C----CCC-----CCC---cee------EEEECCEeCCh--h---
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILA-G----MIP-----LRR---VSG------SVLVNEQPMNI--T--- 104 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~-g----~~~-----~~~---~~G------~I~~~g~~~~~--~--- 104 (610)
..|+|||++|++||++||+|+||||||||+++|. | .+. ++. ..| .|.+++.++.. .
T Consensus 656 ~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~p 735 (993)
T 2ygr_A 656 HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNP 735 (993)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCH
T ss_pred ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccch
Confidence 4699999999999999999999999999999853 2 221 110 113 35666666521 0
Q ss_pred --------c---------ccceEEEEccCCCCC----------------------C------------------------
Q 044112 105 --------Q---------FRRISGYVTQDEVLF----------------------P------------------------ 121 (610)
Q Consensus 105 --------~---------~~~~~~yv~Q~~~l~----------------------~------------------------ 121 (610)
. ..+..||++|...+. +
T Consensus 736 aty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 815 (993)
T 2ygr_A 736 ATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYK 815 (993)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBT
T ss_pred hhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhcc
Confidence 0 012346776643221 1
Q ss_pred --------CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHHHHHHHHHhCC-
Q 044112 122 --------LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRVSIGVDLVHDP- 191 (610)
Q Consensus 122 --------~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p- 191 (610)
.+||.|++.|.... . ..+++.++++.+||.. ..++.+ ..|||||||||+||++|+.+|
T Consensus 816 g~si~dvl~ltv~e~l~~~~~~-----~--~~~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~ 883 (993)
T 2ygr_A 816 GKTVSEVLDMSIEEAAEFFEPI-----A--GVHRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRST 883 (993)
T ss_dssp TBCHHHHHSSBHHHHHHHSTTC-----H--HHHHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCCC
T ss_pred CCCHHHHhhccHHHHHHHhhcc-----h--HHHHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCCC
Confidence 35777887764321 1 1234578999999986 556655 699999999999999999875
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 192 --AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 192 --~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
++|||||||+|||+.+...+++.|+++++ .|.|||+++|+++. + +.||++++| ++|++++.|+++++.
T Consensus 884 ~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl~~-i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~ 959 (993)
T 2ygr_A 884 GRTVYILDEPTTGLHFDDIRKLLNVINGLVD-KGNTVIVIEHNLDV-I-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVA 959 (993)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCHHH-H-TTCSEEEEEESSSTTSCSEEEEEECHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCHHH-H-HhCCEEEEECCCcCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999999975 58999999999873 4 789999999 689999999998764
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-32 Score=299.91 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=150.3
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee-E-EEECCEeCChhcccceEEEEccCCC---CCCCCCH
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG-S-VLVNEQPMNITQFRRISGYVTQDEV---LFPLLTV 125 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G-~-I~~~g~~~~~~~~~~~~~yv~Q~~~---l~~~lTv 125 (610)
++++|+++++||+++|+||||||||||+|+|+|+.+++ +| + |.+||. .++.++|++|+.. +.+.+||
T Consensus 128 y~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~--~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF--NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH--HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hhcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc--CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 35789999999999999999999999999999998765 89 9 999982 2567899999984 4556799
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHH--HHhCCCE----EEEeC-
Q 044112 126 KETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVD--LVHDPAV----LLIDE- 198 (610)
Q Consensus 126 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a--L~~~p~l----lllDE- 198 (610)
+||+ |+.....+.. .++++.++++.+|+.+..+ . .+|||||||||+||++ |+.+|++ |||||
T Consensus 200 ~eni-~~~~~~~~~~---~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 200 QLPT-WGQSLTSGAT---LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TCTT-CSCBCBSSCC---SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hhhh-cccccccCcc---hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 9998 6543211111 1234566788889987665 2 5899999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc--H---HHHHhcce-----EEEee-CCeEEEEcChhHH
Q 044112 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG--F---RILELFDQ-----ILLLS-KGTVVHHGSLDLL 261 (610)
Q Consensus 199 PtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~--~---~i~~~~D~-----v~~L~-~G~iv~~g~~~~~ 261 (610)
||+|||+. ...+.++++ +.++|+|+++|+.+ . ++.+++|+ +++|+ +|+++ .|+++++
T Consensus 269 Pts~LD~~-~~~l~~l~~----~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIE----KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp CGGGSCSS-CHHHHHHHH----HTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccccChh-HHHHHHHHH----HhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 99999998 444444443 44789999999987 2 35689999 99999 99999 9998765
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.96 E-value=8.9e-29 Score=267.45 Aligned_cols=202 Identities=21% Similarity=0.288 Sum_probs=148.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC------------------------------------Ccee
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR------------------------------------RVSG 92 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~------------------------------------~~~G 92 (610)
.+++++|+++++| +++|+|||||||||||++|+++.... +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5799999999999 99999999999999999997776420 1268
Q ss_pred EEEECCEeCCh---hccc-ceEEEEccCCCCCCCCCHHHHHHHHHHhcC-----------------------CCC-----
Q 044112 93 SVLVNEQPMNI---TQFR-RISGYVTQDEVLFPLLTVKETLMYSARLRL-----------------------HVG----- 140 (610)
Q Consensus 93 ~I~~~g~~~~~---~~~~-~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~-----------------------~~~----- 140 (610)
++.+||++++. .++. ..+++++|++.++.. +..+...|.-.... ...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 99999999864 2233 348999999876543 55544443211100 000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCcccc----------------cc---cccC---
Q 044112 141 -------------------------------LNRAKARVSELLKELGLEHVA----------------NV---RIGG--- 167 (610)
Q Consensus 141 -------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~--- 167 (610)
.+...+.+++.++.+++.+.. +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123455666667664310 00 1110
Q ss_pred ---CCCCc-cCHHHhhHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 168 ---ESSRG-ISGGEKRRVSIGVDLVHDP--AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 168 ---~~~~~-LSgGerqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
...+. ||||||||++||++|+.+| ++|+|||||+|||+.++..+.+.|++++ + |+|||++||+++ +.+.|
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~-~~~vi~itH~~~--~~~~~ 362 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-D-TRQVLVVTHLAQ--IAARA 362 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-T-TSEEEEECSCHH--HHTTC
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-C-CCEEEEEeCcHH--HHhhc
Confidence 11122 6999999999999999999 9999999999999999999999999996 3 899999999984 56899
Q ss_pred ceEEEe----eCCeEEEEc
Q 044112 242 DQILLL----SKGTVVHHG 256 (610)
Q Consensus 242 D~v~~L----~~G~iv~~g 256 (610)
|++++| ++|+++...
T Consensus 363 d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 363 HHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SEEEEEEEEEETTEEEEEE
T ss_pred CeEEEEEEeccCCceEEEE
Confidence 999999 999987653
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.93 E-value=6.6e-30 Score=251.30 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=101.2
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCC--hhcccceEEEEccCCCCCCCCCHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN--ITQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~--~~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
.+|+|+ ++||+++|+||||||||||||+|+|+ +|+ +|+|. +.++. ....++.+||++|++ +
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~--~G~I~--~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ--SKQVS--RIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH--TTSCS--EEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc--CCeee--eEEecCCchhhhcceEEecCCH--------H
Confidence 799996 89999999999999999999999999 765 88884 22221 123567799999976 4
Q ss_pred HHH-HHHH----HhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC
Q 044112 127 ETL-MYSA----RLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS 201 (610)
Q Consensus 127 E~l-~~~~----~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 201 (610)
||+ .+.. .+.... ..++++++++. |+ ||||||+|||||+.+|++|+|||||+
T Consensus 77 enl~~~~~~~~~~~~~~~----~~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMV----EPEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ---CTTTHHHHHHHTTTS----CTTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHhc----cHHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 555 2311 111000 12345555543 32 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 202 GLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 202 gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
| ++..+++.|+++ + .|+||| +|||++
T Consensus 134 ~----~~~~l~~~l~~l-~-~g~tii-vtHd~~ 159 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-G-FGSKMV-VTGDIT 159 (208)
T ss_dssp C----CHHHHHHHHTTB-C-TTCEEE-EEEC--
T ss_pred c----cHHHHHHHHHHh-c-CCCEEE-EECCHH
Confidence 9 889999999988 4 489999 999986
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=7.1e-26 Score=241.18 Aligned_cols=83 Identities=35% Similarity=0.520 Sum_probs=76.1
Q ss_pred CCCccCHHHhhHHHHHHHHH------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 169 SSRGISGGEKRRVSIGVDLV------HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia~aL~------~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++ ..+.+|
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCHH--HHTTCS
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCC
Confidence 45689999999999999999 69999999999999999999999999999974 5999999999986 368899
Q ss_pred eEEEeeCCeEEE
Q 044112 243 QILLLSKGTVVH 254 (610)
Q Consensus 243 ~v~~L~~G~iv~ 254 (610)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999864
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.3e-25 Score=235.24 Aligned_cols=199 Identities=19% Similarity=0.246 Sum_probs=127.4
Q ss_pred cceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC--------------------------------------------
Q 044112 52 KNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL-------------------------------------------- 87 (610)
Q Consensus 52 ~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~-------------------------------------------- 87 (610)
+++++++.+| +++|+|||||||||||++|..++..
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678999999 9999999999999999999954300
Q ss_pred ----CCceeEEEECCEeCChh---cccceEEEEccCCCCCCCCCHHHHHHHHHHhc-----------CCC-CHHHHHHH-
Q 044112 88 ----RRVSGSVLVNEQPMNIT---QFRRISGYVTQDEVLFPLLTVKETLMYSARLR-----------LHV-GLNRAKAR- 147 (610)
Q Consensus 88 ----~~~~G~I~~~g~~~~~~---~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~-----------~~~-~~~~~~~~- 147 (610)
.+.+|++.+||++.... ...+.+++.+|+..+++.-++.+++.....-+ .+. ..+...+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 01147889999887532 22334555555544433323444332211100 000 00001111
Q ss_pred --------------------HHHHHHHcCCc------ccccccccCCCCCccCHHHhhHHHHHHHHH----hCCCEEEEe
Q 044112 148 --------------------VSELLKELGLE------HVANVRIGGESSRGISGGEKRRVSIGVDLV----HDPAVLLID 197 (610)
Q Consensus 148 --------------------v~~~l~~lgL~------~~~~~~vg~~~~~~LSgGerqRv~ia~aL~----~~p~llllD 197 (610)
+.++++. |+. +..+. .+..||||||||++||++|+ .+|++++||
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-g~~~~~~~~~~~~~-----~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllD 248 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDA-GFEISIRKPGRRDQ-----KLSLLSGGEKALVGLALLFALMEIKPSPFYVLD 248 (322)
T ss_dssp HHHHHHHHTSCEEEC---------------CCEEECTTSCCC-----BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEE
T ss_pred HHHHHHhcCCceEEEEeeccccccccC-CeEEEEecCccccC-----chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEe
Confidence 1122221 221 11222 34699999999999999997 578999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE--EEeeCCeE-EEEcChhHH
Q 044112 198 EPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI--LLLSKGTV-VHHGSLDLL 261 (610)
Q Consensus 198 EPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v--~~L~~G~i-v~~g~~~~~ 261 (610)
|||++||+..+..+.+.|++++ .|++||++||+++ +.+.+|++ ++|.+|+. +.....++.
T Consensus 249 Ep~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 249 EVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp SCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999999999984 3789999999974 57899987 78888754 455555543
No 69
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.92 E-value=5.4e-28 Score=260.09 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=143.0
Q ss_pred ccccceeEEEeCce--------------------EEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccc
Q 044112 49 CILKNVNCEARPGE--------------------IMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRR 108 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge--------------------~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~ 108 (610)
.+|+|||+++++|| ++||+||||||||||+|+|+|+.+++ +|+|.++|.+.+ +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~--~GsI~~~g~~~t----~- 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE--EGAAKTGVVEVT----M- 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS--TTSCCCCC--------C-
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc--CceEEECCeecc----e-
Confidence 68999999999999 99999999999999999999999876 899999997653 1
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH--HhhHHHHHHH
Q 044112 109 ISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG--EKRRVSIGVD 186 (610)
Q Consensus 109 ~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG--erqRv~ia~a 186 (610)
.+|++|++ .++.+|+.|++.++. + +.+++++++.+++.+.. ..+ .|||| ||||+.||++
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~------~~~~~~~L~~~~L~~~~-~~~------~lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T------NFPPDTYLEKMKFYEYD-FFI------IISATRFKKNDIDIAKA 170 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S------SCCHHHHHHHTTGGGCS-EEE------EEESSCCCHHHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h------HHHHHHHHHHcCCCccC-CeE------EeCCCCccHHHHHHHHH
Confidence 27899985 577889999875531 1 23477889999987653 222 39999 9999999999
Q ss_pred HHh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH----hC----CcEEEEEecCCcH-HHHHhcceEE-E
Q 044112 187 LVH----------DPAVLLIDEPTSGLDSASALNVASLLKYMAV----KQ----GKTIVLTIHQPGF-RILELFDQIL-L 246 (610)
Q Consensus 187 L~~----------~p~llllDEPtsgLD~~~~~~i~~~L~~la~----~~----g~tvi~~~H~~~~-~i~~~~D~v~-~ 246 (610)
|+. +|++++|||||+|||+.++.++++.|+++.+ +. ..+|++++|+.+. .+.+++|++. .
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~ 250 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 250 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHh
Confidence 999 9999999999999999999999999999852 22 3678999998862 2778888875 4
Q ss_pred eeCCe
Q 044112 247 LSKGT 251 (610)
Q Consensus 247 L~~G~ 251 (610)
|.+|+
T Consensus 251 Lpeg~ 255 (413)
T 1tq4_A 251 LPIYK 255 (413)
T ss_dssp SCGGG
T ss_pred Cccch
Confidence 44443
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=6.7e-26 Score=215.70 Aligned_cols=143 Identities=16% Similarity=0.167 Sum_probs=101.3
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCC-CCCCCHHHHHHH
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVL-FPLLTVKETLMY 131 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l-~~~lTv~E~l~~ 131 (610)
|||+++++||+++|+||||||||||+|++.+-. ..++ .... .++++|++.- ...-++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~--------~~~~-----~d~~---~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT--------EVIS-----SDFC---RGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG--------GEEE-----HHHH---HHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC--------eEEc-----cHHH---HHHhcCcccchhhHHHHHHHHH-
Confidence 689999999999999999999999999965321 1111 1112 2566676421 00001111111
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHH-----
Q 044112 132 SARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSA----- 206 (610)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~----- 206 (610)
.... .....|.....+.. ...|||||||++||++++.+|++++|||||+|||+.
T Consensus 64 --------------~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 --------------YIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp --------------HHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred --------------HHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1111 22234554444432 356999999999999999999999999999999999
Q ss_pred -----------HHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 207 -----------SALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 207 -----------~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
...++.+.|++++++ |.|+|++||+++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~-g~tvi~vtH~~~ 160 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQRE-GFRYVYILNSPE 160 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHH-TCSEEEEECSHH
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhc-CCcEEEEeCCHH
Confidence 558999999998766 999999999986
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=1.6e-28 Score=240.78 Aligned_cols=179 Identities=15% Similarity=0.100 Sum_probs=125.3
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+++| .++++||+++|+||||||||||+|+|+|+++. +.+.+.+.+.+.. ...++.++|++|++.+++.+|+.|+
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~-~~~~~~i~~~~q~~~~~~~~~~~~~ 84 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPR-PGEVDGVDYHFIDPTRFQQLIDQGE 84 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCC-TTCCBTTTBEECCHHHHHHHHHTTC
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCc-ccccCCCeeEecCHHHHHHHHhcCC
Confidence 78898 79999999999999999999999999999852 2333322222211 1234668999999888888888887
Q ss_pred HHHHHHh----c-CCCCHHHHHHHHHHH------HHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEe
Q 044112 129 LMYSARL----R-LHVGLNRAKARVSEL------LKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLID 197 (610)
Q Consensus 129 l~~~~~~----~-~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllD 197 (610)
+...... . .+.+.++.++++++. ++.+|+.+.++... +.|| +|+.+|++++||
T Consensus 85 l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 85 LLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp EEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHHH
T ss_pred ceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHHH
Confidence 6422111 0 111334445566665 66667666666554 4677 899999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 198 EPTSGL----DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 198 EPtsgL----D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|||+|+ |+..+.++.+.+++++++.|.|+|+++||++ ++.++||++++|.+
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 999998 7889999999999997666899999999998 58999999999853
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=1.2e-24 Score=208.76 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=101.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV 139 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~ 139 (610)
.++|+||||||||||+|+|+|++. |.++|.+... ...++.+||++|+. ++.+++ + +.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~--~~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSK--FF 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EET--TC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhh--cC
Confidence 589999999999999999999974 2334433211 13456789999975 222332 1 010 00
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHH-----HHhCCCEEEEeC--CCCCCCHHHHHHHH
Q 044112 140 GLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVD-----LVHDPAVLLIDE--PTSGLDSASALNVA 212 (610)
Q Consensus 140 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a-----L~~~p~llllDE--PtsgLD~~~~~~i~ 212 (610)
. -.+..+++ +..||||||||++||++ ++.+|++++||| ||++||+.....+.
T Consensus 65 ~----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 T----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp C----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred C----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0 00223333 36899999999999996 999999999999 99999999999999
Q ss_pred HHHHHHHHhCCcEEEEEec---CCcHHHHHhcceEEEeeCCeEEE
Q 044112 213 SLLKYMAVKQGKTIVLTIH---QPGFRILELFDQILLLSKGTVVH 254 (610)
Q Consensus 213 ~~L~~la~~~g~tvi~~~H---~~~~~i~~~~D~v~~L~~G~iv~ 254 (610)
+.+++ .+.|+|+++| +.+ .+..++|+ .+|+++.
T Consensus 124 ~~l~~----~~~~~i~~~H~~h~~~-~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD----PNVNVVATIPIRDVHP-LVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC----TTSEEEEECCSSCCSH-HHHHHHTC----TTCEEEE
T ss_pred HHHhc----CCCeEEEEEccCCCch-HHHHHHhc----CCcEEEE
Confidence 88864 4677888886 554 47778887 4566654
No 73
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=7.4e-28 Score=249.12 Aligned_cols=169 Identities=13% Similarity=0.123 Sum_probs=129.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEEC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVN 97 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~ 97 (610)
.|+++||++.| + + .+|+|+|+++++||+++|+||||||||||+++|+|++ +|+|
T Consensus 101 ~i~~~~vs~~y----------------~-~-~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I--- 154 (305)
T 2v9p_A 101 FFNYQNIELIT----------------F-I-NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV--- 154 (305)
T ss_dssp HHHHTTCCHHH----------------H-H-HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE---
T ss_pred eEEEEEEEEEc----------------C-h-hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE---
Confidence 36777887776 2 3 6999999999999999999999999999999999997 5887
Q ss_pred CEeCChhcccceEEEEccCCCCCCCCCHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 98 EQPMNITQFRRISGYVTQDEVLFPLLTVKE-TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 98 g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E-~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
++|++|++.+++. |++| |+.+... .+ +.+.+.++.+ |.+..+ | ..||||
T Consensus 155 ------------~~~v~q~~~lf~~-ti~~~ni~~~~~----~~-----~~~~~~i~~~-L~~gld---g----~~LSgG 204 (305)
T 2v9p_A 155 ------------LSFANHKSHFWLA-SLADTRAALVDD----AT-----HACWRYFDTY-LRNALD---G----YPVSID 204 (305)
T ss_dssp ------------ECGGGTTSGGGGG-GGTTCSCEEEEE----EC-----HHHHHHHHHT-TTGGGG---T----CCEECC
T ss_pred ------------EEEecCccccccc-cHHHHhhccCcc----cc-----HHHHHHHHHH-hHccCC---c----cCcCHH
Confidence 3567788777764 7776 7765311 01 1344555553 444333 2 689999
Q ss_pred HhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 177 EKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 177 erqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
|||| ||||+.+|+||| ||+||+.+...+.. .+|+++ ..+.+|++ +|++|++++.|
T Consensus 205 qkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~g 259 (305)
T 2v9p_A 205 RKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFNI 259 (305)
T ss_dssp CSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCCC
T ss_pred HHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEeC
Confidence 9999 999999999999 99999999888752 188886 35889999 99999999999
Q ss_pred ChhHHHHHHHH
Q 044112 257 SLDLLEHRLRI 267 (610)
Q Consensus 257 ~~~~~~~~~~~ 267 (610)
+++++...+..
T Consensus 260 ~~~el~~~y~~ 270 (305)
T 2v9p_A 260 TDADWKSFFVR 270 (305)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99988555543
No 74
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=4.3e-25 Score=229.01 Aligned_cols=175 Identities=18% Similarity=0.167 Sum_probs=136.8
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChh-------cc--cceEEEEccCCC-CC
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNIT-------QF--RRISGYVTQDEV-LF 120 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~-------~~--~~~~~yv~Q~~~-l~ 120 (610)
++++|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.+.... .+ ++.++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 35789999999999999999999999999999998876 89999999886421 22 346899999998 89
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCC--EEEEeC
Q 044112 121 PLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPA--VLLIDE 198 (610)
Q Consensus 121 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llllDE 198 (610)
|.+|++|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+||
T Consensus 168 ~~~~v~e~l~~~~~~~--~d--------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 228 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 228 (302)
T ss_dssp HHHHHHHHHHHHHHTT--CS--------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE-
T ss_pred HHHHHHHHHHHHHHcC--Cc--------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe-
Confidence 9999999999864311 00 13566778877776666 5899 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc--------HHHHHhcceEEEeeCCeE
Q 044112 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG--------FRILELFDQILLLSKGTV 252 (610)
Q Consensus 199 PtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i 252 (610)
||+|||+.++ ++++.++.|.|+|++||... ..+....+.|..+..|+.
T Consensus 229 ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999999854 34555456899999999322 113345678888888864
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.88 E-value=9.3e-25 Score=223.07 Aligned_cols=148 Identities=18% Similarity=0.179 Sum_probs=100.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHH
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLN 142 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~ 142 (610)
.++|+||||||||||+|+|+|+..++ +|+|.++|+++.....++.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~--~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~-- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR--KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC-- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH--
Confidence 47999999999999999999999876 99999999987655556789999999999999999999998764332111
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 044112 143 RAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQ 222 (610)
Q Consensus 143 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~ 222 (610)
.+.+.+.++ .+..+... ..||||||||+++||+++. ++++|||++|||+.. .+.++++.+ .
T Consensus 80 --~~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~-~ 140 (270)
T 3sop_A 80 --WEPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK-V 140 (270)
T ss_dssp --SHHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT-T
T ss_pred --HHHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh-c
Confidence 122333333 33444444 5899999999999999876 999999999999987 556666653 3
Q ss_pred CcEEEEEecCCc
Q 044112 223 GKTIVLTIHQPG 234 (610)
Q Consensus 223 g~tvi~~~H~~~ 234 (610)
++||+++|..+
T Consensus 141 -~~vI~Vi~K~D 151 (270)
T 3sop_A 141 -VNIIPVIAKAD 151 (270)
T ss_dssp -SEEEEEETTGG
T ss_pred -CcEEEEEeccc
Confidence 79999998754
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.87 E-value=7.2e-25 Score=238.22 Aligned_cols=177 Identities=13% Similarity=0.094 Sum_probs=143.5
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCE---eCCh--------hcccceEEEEccC-
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ---PMNI--------TQFRRISGYVTQD- 116 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~---~~~~--------~~~~~~~~yv~Q~- 116 (610)
.+|+++ +.+.+||+++|+|||||||||||++|+|+.+++ +|.|.++|+ ++.. ...++.++|++|+
T Consensus 146 ~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~--~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~ 222 (438)
T 2dpy_A 146 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD--VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPAD 222 (438)
T ss_dssp HHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTT
T ss_pred eEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC--eEEEEEeceecHHHHHHHHhhccccccCceEEEEECCC
Confidence 699999 999999999999999999999999999999876 999999998 4421 2356789999995
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEE
Q 044112 117 EVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLI 196 (610)
Q Consensus 117 ~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llll 196 (610)
+.+++.+||.||+.+.+..... ..+ ......+. ...+|+|| ||++|| +.+|++
T Consensus 223 ~~~~~~~~v~~~~~~~ae~~~~-----~~~---------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~--- 275 (438)
T 2dpy_A 223 VSPLLRMQGAAYATRIAEDFRD-----RGQ---------HVLLIMDS------LTRYAMAQ-REIALA---IGEPPA--- 275 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHT-----TTC---------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-----CCC---------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc---
Confidence 5567888999999887643200 000 01111222 35799999 999999 889988
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHH---hCCc-----EEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHH
Q 044112 197 DEPTSGLDSASALNVASLLKYMAV---KQGK-----TIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 197 DEPtsgLD~~~~~~i~~~L~~la~---~~g~-----tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
|+|||+.....+.+.++++.+ +.|+ ||++++||++ ...+|++++|.+|+++..|++++.
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeCcEEEEeCCHHHc
Confidence 999999999999999999865 2375 9999999997 368999999999999999887654
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=6.5e-24 Score=224.53 Aligned_cols=174 Identities=18% Similarity=0.172 Sum_probs=137.3
Q ss_pred cceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChh-------cc--cceEEEEccCCC-CCC
Q 044112 52 KNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNIT-------QF--RRISGYVTQDEV-LFP 121 (610)
Q Consensus 52 ~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~-------~~--~~~~~yv~Q~~~-l~~ 121 (610)
+++|+++++|++++|+||||||||||++.|+|++++. +|+|.++|.++... .+ ++.++|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 4688999999999999999999999999999998875 89999999887421 12 346899999988 889
Q ss_pred CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCC--EEEEeCC
Q 044112 122 LLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPA--VLLIDEP 199 (610)
Q Consensus 122 ~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llllDEP 199 (610)
.+|++|++.++.... .. ..+++.+|+.+..+..+ .+|| |||++||++|+.+|+ +|+|| |
T Consensus 226 ~~tv~e~l~~~~~~~--~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD-p 286 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG--YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHHHTT--CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred hhhHHHHHHHHHhCC--CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence 999999999864311 00 13456778877766665 5899 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc--------HHHHHhcceEEEeeCCeE
Q 044112 200 TSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG--------FRILELFDQILLLSKGTV 252 (610)
Q Consensus 200 tsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~--------~~i~~~~D~v~~L~~G~i 252 (610)
|+|||+.++. +++.++.|.|+|++||... .-.....+.|..+..|+.
T Consensus 287 ttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 287 NTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998653 4454456899999999321 113345678888888864
No 78
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=1.5e-21 Score=225.84 Aligned_cols=110 Identities=23% Similarity=0.393 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 044112 144 AKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDP--AVLLIDEPTSGLDSASALNVASLLKYMAV 220 (610)
Q Consensus 144 ~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~L~~la~ 220 (610)
..++++ .++.+||.+. .++.+ ..|||||||||.||++|..+| ++|+|||||+|||+.....+.++|+++.
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~-----~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~- 428 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRST-----PTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLK- 428 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBG-----GGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-
T ss_pred HHHHHH-HHHhCCCCcCCccCCc-----CcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHH-
Confidence 344555 6889999865 67766 599999999999999999999 5999999999999999999999999996
Q ss_pred hCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 221 KQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 221 ~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
+.|.|||+++|+++ +.+.+|+|++| ++|++++.|+++++.
T Consensus 429 ~~G~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 429 RGGNSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HcCCEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 46999999999985 46789999999 789999999998753
No 79
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.86 E-value=8.7e-23 Score=210.72 Aligned_cols=185 Identities=17% Similarity=0.132 Sum_probs=126.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee-EEEECCEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG-SVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G-~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
.+|+++++.+++|++++|+||||||||||++.|+|...+. +| .|.+.+.+.+..++++.+..+.|+.. +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 6899999999999999999999999999999999998654 57 67665544444344433333343322 12334
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH-hhHHHHHHHHHhCCCEEEEeCCCC---C-
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE-KRRVSIGVDLVHDPAVLLIDEPTS---G- 202 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~aL~~~p~llllDEPts---g- 202 (610)
++.... + +.++.++.++++++..++. ..+ .+..+|.+| +||+. |+++..+|+++++||||+ +
T Consensus 97 ~l~~~~-~----~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 97 SLKREI-I----ENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp HHHHHH-H----HHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred ccccCC-C----CHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 444321 1 1223334455554433331 111 123688898 66676 999999999999999999 5
Q ss_pred --CCH-HHHHHHHHHHHHHHHhCCcEEEEEecCC--cH-------------------HHHHhcceEEEeeCCeE
Q 044112 203 --LDS-ASALNVASLLKYMAVKQGKTIVLTIHQP--GF-------------------RILELFDQILLLSKGTV 252 (610)
Q Consensus 203 --LD~-~~~~~i~~~L~~la~~~g~tvi~~~H~~--~~-------------------~i~~~~D~v~~L~~G~i 252 (610)
+|. ....++++.|++++++.|+|||+++|+. +. .+.+.||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 565 6778899999999887799999999996 31 47789999999998874
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.85 E-value=3.6e-21 Score=203.78 Aligned_cols=85 Identities=20% Similarity=0.178 Sum_probs=76.1
Q ss_pred CCCC-ccCHHHhhHHHHHHHHH---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHH
Q 044112 168 ESSR-GISGGEKRRVSIGVDLV---------HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRI 237 (610)
Q Consensus 168 ~~~~-~LSgGerqRv~ia~aL~---------~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i 237 (610)
..++ .||||||||++||++|+ .+|+||+|||||++||+..+..+++.|+++. .|+|++|| ++ +
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th-~~-~- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTE-LA-P- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESS-CC-T-
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEe-cc-c-
Confidence 3455 79999999999999999 8999999999999999999999999998752 69999999 44 2
Q ss_pred HHhcceEEEeeCCeEEEEcChhHH
Q 044112 238 LELFDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 238 ~~~~D~v~~L~~G~iv~~g~~~~~ 261 (610)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999998764
No 81
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.85 E-value=5.8e-26 Score=224.78 Aligned_cols=175 Identities=11% Similarity=0.080 Sum_probs=111.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh----hcccceEEEEccCCCCCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI----TQFRRISGYVTQDEVLFPLLT 124 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~----~~~~~~~~yv~Q~~~l~~~lT 124 (610)
.-|+|||+++++|++++|+||||||||||+++|+|+. | |+|.+ |.+.+. ...++.++|++|++.+++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 5799999999999999999999999999999999987 3 78888 766432 123467899999877665433
Q ss_pred H-HHHHH---HHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHH-----HHHHHhCCCEEE
Q 044112 125 V-KETLM---YSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSI-----GVDLVHDPAVLL 195 (610)
Q Consensus 125 v-~E~l~---~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i-----a~aL~~~p~lll 195 (610)
. .+++. +....+ +.+ ++.++++++...+. ..+ ..+|||||||++| +++++.+|++++
T Consensus 85 ~~~~~l~~~~~~~~~~-g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~ 150 (218)
T 1z6g_A 85 KNEDFLEYDNYANNFY-GTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDV 150 (218)
T ss_dssp HTTCEEEEEEETTEEE-EEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHH
T ss_pred hccchhhhhhcccccC-CCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHH
Confidence 1 11111 111110 111 23466666654321 111 4799999999999 899999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHh------CCcEEEEEecCCcHHHHHhcceE
Q 044112 196 IDEPTSGLDSASALNVASLLKYMAVK------QGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 196 lDEPtsgLD~~~~~~i~~~L~~la~~------~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
|||||+++|..+...+.+.|++..++ .+...|+++|+++ ++++.+|++
T Consensus 151 Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 151 LLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 99999999999999999998876543 2334444555443 344444443
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=9.9e-23 Score=213.94 Aligned_cols=132 Identities=16% Similarity=0.236 Sum_probs=109.3
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCC-hhcccceEEEEccCCCCCCCCCHHHH
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN-ITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~-~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
+++++|+.+++|++++|+||||||||||+|+|+|+++++ +|.|.++|.+.. ....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeeccccccchhEEEEEe--------------
Confidence 799999999999999999999999999999999999876 999999986421 111333444442
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
+ |||+||++||++|..+|+++++||||+
T Consensus 224 -------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~------- 251 (330)
T 2pt7_A 224 -------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS------- 251 (330)
T ss_dssp -------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------
T ss_pred -------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------
Confidence 1 799999999999999999999999998
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE
Q 044112 209 LNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV 252 (610)
Q Consensus 209 ~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i 252 (610)
.++.+.|+.+. ..+.|+|+|+|+++ ..+.+||+++|.+|+.
T Consensus 252 ~e~~~~l~~~~-~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 SEAYDFYNVLC-SGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp THHHHHHHHHH-TTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHh-cCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 24567787775 33458999999997 5789999999998863
No 83
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.83 E-value=1.2e-22 Score=214.36 Aligned_cols=194 Identities=15% Similarity=0.188 Sum_probs=139.6
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..++.+|+++.+. ... .+|+++ +.+.+||+++|+||||||||||+++|+|+.+++ .|.|.+
T Consensus 44 ~~i~~~~l~~~~~---------------tg~-~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~ 104 (347)
T 2obl_A 44 DPLLRQVIDQPFI---------------LGV-RAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLAL 104 (347)
T ss_dssp CSTTCCCCCSEEC---------------CSC-HHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEE
T ss_pred CCeeecccceecC---------------CCC-EEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEE
Confidence 3466677777662 133 699999 999999999999999999999999999999876 899999
Q ss_pred CCEeCCh----------hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccccc
Q 044112 97 NEQPMNI----------TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIG 166 (610)
Q Consensus 97 ~g~~~~~----------~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 166 (610)
.|++... ..+++.+.++.|.+. +..+.+.-... ...+.+.....+ .+... ..
T Consensus 105 ~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~----------~~~~ae~~~~~~-~~vl~-~l- 166 (347)
T 2obl_A 105 IGERGREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT----------ATTIAEYFRDQG-KNVLL-MM- 166 (347)
T ss_dssp ESCCHHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH----------HHHHHHHHHTTT-CEEEE-EE-
T ss_pred ecccHHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH----------HHHHHHHHHhcc-ccHHH-HH-
Confidence 9975211 123456788887542 23333221110 000111111111 11100 00
Q ss_pred CCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCc-----EEEEEecCCcHHHHHh
Q 044112 167 GESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAV-KQGK-----TIVLTIHQPGFRILEL 240 (610)
Q Consensus 167 ~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~-~~g~-----tvi~~~H~~~~~i~~~ 240 (610)
+.+..+|+|| ||+++| +.+|++ |+|||+....++.++++++.+ +.|. ||++++||++ ..+
T Consensus 167 -d~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i 232 (347)
T 2obl_A 167 -DSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPI 232 (347)
T ss_dssp -ETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHH
T ss_pred -hhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chh
Confidence 1246899999 899999 688887 999999999999999999864 4587 9999999997 367
Q ss_pred cceEEEeeCCeEEEEcChhHH
Q 044112 241 FDQILLLSKGTVVHHGSLDLL 261 (610)
Q Consensus 241 ~D~v~~L~~G~iv~~g~~~~~ 261 (610)
+|+++++.+|+++.+++.++.
T Consensus 233 ~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 233 GDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHCSEEEEBCHHHHTT
T ss_pred hhheEEeeCcEEEEeCCHHHc
Confidence 999999999999999887654
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.83 E-value=7.5e-24 Score=220.66 Aligned_cols=159 Identities=11% Similarity=0.037 Sum_probs=115.0
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL 137 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~ 137 (610)
+++|+++||+||||||||||+++|+|++++. .|+ +.+++|+|++.+++. |++||+.+... .
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--~G~--------------~~v~~v~qd~~~~~~-t~~e~~~~~~~--~ 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--DHH--------------PRVDLVTTDGFLYPN-AELQRRNLMHR--K 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--TTC--------------CCEEEEEGGGGBCCH-HHHHHTTCTTC--T
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--CCC--------------CeEEEEecCccCCcc-cHHHHHHHHHh--c
Confidence 7999999999999999999999999998764 342 458999999999988 99999865321 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044112 138 HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKY 217 (610)
Q Consensus 138 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~ 217 (610)
+.+.....+.+.++++.++ .+..+..+ ..|||||+||+++|++++.+|+|||+|||+..+|+.. ..
T Consensus 148 g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~ 213 (312)
T 3aez_A 148 GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LM 213 (312)
T ss_dssp TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CC
T ss_pred CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HH
Confidence 1222233456778888888 55555555 5899999999999999999999999999999998621 11
Q ss_pred HHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 218 MAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 218 la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
+.+..+. +|+++|+.+.....+.+|.+.+.+|
T Consensus 214 l~~~~D~-~I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 214 VSDLFDF-SLYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp GGGGCSE-EEEEEECHHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCc-EEEEECCHHHHHHHHHHHHHHHHhc
Confidence 2222333 3445555443334455555555444
No 85
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.83 E-value=3.2e-20 Score=195.60 Aligned_cols=77 Identities=22% Similarity=0.393 Sum_probs=68.9
Q ss_pred CCCccCHHHhh------HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 169 SSRGISGGEKR------RVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 169 ~~~~LSgGerq------Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.+ .|+|||++||+++ +.+.||
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~~--~~~~~d 321 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE--LKDAAD 321 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG--GGGGCS
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChHH--HHHhCC
Confidence 45789999999 66777888889999999999999999999999999999865 4789999999964 678999
Q ss_pred eEEEee
Q 044112 243 QILLLS 248 (610)
Q Consensus 243 ~v~~L~ 248 (610)
+++.|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.83 E-value=6.8e-22 Score=198.70 Aligned_cols=178 Identities=13% Similarity=0.140 Sum_probs=112.3
Q ss_pred ccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCC
Q 044112 45 PPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLT 124 (610)
Q Consensus 45 ~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lT 124 (610)
+.+ .+|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~-~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVD-LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCc-eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 444 7999999999999999999999999999999999974 333333 2466799999995 677899
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCC
Q 044112 125 VKETLMYSARLRLHV-GLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGL 203 (610)
Q Consensus 125 v~E~l~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgL 203 (610)
+.|++.+........ +.....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|+++++|||....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred HhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999998754322111 1111223444555543 34444444 5899999999988 5788899999999999888
Q ss_pred CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHH-hcceEEEeeCCeEEEEcChhHHHHHH
Q 044112 204 DSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILE-LFDQILLLSKGTVVHHGSLDLLEHRL 265 (610)
Q Consensus 204 D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~-~~D~v~~L~~G~iv~~g~~~~~~~~~ 265 (610)
|.. +.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+
T Consensus 147 ~~~--------l~~~---~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~ 189 (245)
T 2jeo_A 147 SQE--------IRDM---FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQY 189 (245)
T ss_dssp SHH--------HHTT---CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHH
T ss_pred cHH--------HHHh---cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHH
Confidence 863 2222 3789999999743 3433 34444 5664 455555433
No 87
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=7.3e-21 Score=221.87 Aligned_cols=160 Identities=24% Similarity=0.338 Sum_probs=124.7
Q ss_pred HHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCH-------HHHHHHHH
Q 044112 77 LLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGL-------NRAKARVS 149 (610)
Q Consensus 77 LL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~-------~~~~~~v~ 149 (610)
...|..+++++. .|+|.++|+++.. +..+|+.|++.|...+...... .+..++..
T Consensus 384 C~~C~g~rl~~~--~~~V~i~G~~i~~----------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 445 (916)
T 3pih_A 384 CSVCGGRRLNRE--ALSVKINGLNIHE----------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRL 445 (916)
T ss_dssp CTTTCSCCBCTT--GGGEEETTEEHHH----------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHH
T ss_pred chhcccccCChH--hcCcEECCccHHH----------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHH
Confidence 345555666655 8999999988632 2346788888775443322110 01113345
Q ss_pred HHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEE
Q 044112 150 ELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDPA--VLLIDEPTSGLDSASALNVASLLKYMAVKQGKTI 226 (610)
Q Consensus 150 ~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tv 226 (610)
+.|..+||... .++.+ .+|||||||||.||++|+++|+ +|+|||||+|||+.....++++|+++++ .|.||
T Consensus 446 ~~L~~vgL~~l~l~r~~-----~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~-~G~Tv 519 (916)
T 3pih_A 446 EFLVDVGLEYLTLSRSA-----TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD-LGNTV 519 (916)
T ss_dssp HHHHTTTCTTCBTTSBG-----GGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-TTCEE
T ss_pred HHHHHcCCccccccCCc-----ccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-cCCEE
Confidence 67888999764 56666 5999999999999999999887 9999999999999999999999999974 59999
Q ss_pred EEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 227 VLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 227 i~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
|+++||++ ....+|++++| ++|++++.|+++++.
T Consensus 520 ivVtHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 520 IVVEHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp EEECCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred EEEeCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 99999985 34669999999 899999999998864
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=2.2e-20 Score=207.74 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=70.8
Q ss_pred CCCcc-CHHHhhHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 169 SSRGI-SGGEKRRVSIGVDLVHDP--AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 169 ~~~~L-SgGerqRv~ia~aL~~~p--~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
.+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ +...+|+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~~--~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLAQ--IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCHH--HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCHH--HHHhCCEEE
Confidence 34567 999999999999999999 99999999999999999999999999974 789999999985 456899999
Q ss_pred EeeCC
Q 044112 246 LLSKG 250 (610)
Q Consensus 246 ~L~~G 250 (610)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99654
No 89
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=3.4e-23 Score=230.79 Aligned_cols=167 Identities=19% Similarity=0.115 Sum_probs=122.2
Q ss_pred ccccceeE-EEeCceEEEEECCCCCcHHHHHHH--HHCCCCCCCceeEEEECCEeCCh--hcccceEEEEccCCCCCCCC
Q 044112 49 CILKNVNC-EARPGEIMAIVGPSGAGKTTLLDI--LAGMIPLRRVSGSVLVNEQPMNI--TQFRRISGYVTQDEVLFPLL 123 (610)
Q Consensus 49 ~iL~~vs~-~i~~Ge~~ailG~nGaGKSTLL~~--L~g~~~~~~~~G~I~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~l 123 (610)
.+|+++|+ .+++||+++|+||||||||||+++ ++|+.+++ +|.|+++|++... ...++.+||++|+....+.
T Consensus 26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~--~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~- 102 (525)
T 1tf7_A 26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--EPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK- 102 (525)
T ss_dssp TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS-
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc-
Confidence 79999999 999999999999999999999999 78998766 8999999987422 2334568999997542211
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC--
Q 044112 124 TVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS-- 201 (610)
Q Consensus 124 Tv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts-- 201 (610)
+.+ .... .. ++..++++.++|.+..++.+ +.||||| |+++++||||+
T Consensus 103 -----l~~---~~~~-~~----~~~~~~l~~~~l~~~~~~~~-----~~LS~g~-------------~~~lilDe~t~~~ 151 (525)
T 1tf7_A 103 -----LFI---LDAS-PD----PEGQEVVGGFDLSALIERIN-----YAIQKYR-------------ARRVSIDSVTSVF 151 (525)
T ss_dssp -----EEE---EECC-CC----SSCCSCCSSHHHHHHHHHHH-----HHHHHHT-------------CSEEEEECSTTTS
T ss_pred -----EEE---EecC-cc----cchhhhhcccCHHHHHHHHH-----HHHHHcC-------------CCEEEECCHHHHH
Confidence 100 0000 00 00112333444444444443 4677765 77899999998
Q ss_pred ---CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH--------HHHhcceEEEeeCC
Q 044112 202 ---GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFR--------ILELFDQILLLSKG 250 (610)
Q Consensus 202 ---gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~--------i~~~~D~v~~L~~G 250 (610)
+||+..+..+.++++++++ .|+|||+++|+++.. ...+||+|++|++|
T Consensus 152 ~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 152 QQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 5699999999999999976 599999999999741 34569999999983
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.81 E-value=4.1e-21 Score=227.44 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=121.6
Q ss_pred eeEEEEe-----EEEEEecccccccccccccccccccccccceeEEEeC-------ceEEEEECCCCCcHHHHHHHHHCC
Q 044112 17 YRIRTKK-----LTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARP-------GEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 17 ~~l~~~~-----ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
..|+++| |++.+. +.+ .+++|+++.+++ |++++|+||||||||||||+| |+
T Consensus 749 ~~l~i~~~rHP~l~~~~~---------------~~~-~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF---------------GDD-FIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEEECCCC---------------------CCC-CCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred ceEEEEeccccEEEEEec---------------CCc-eEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 3589999 887762 234 799999999987 999999999999999999999 88
Q ss_pred CCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccccccc
Q 044112 85 IPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVR 164 (610)
Q Consensus 85 ~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 164 (610)
+.+ .++..+||||+.. .+||.|++. .+ +|+.+..+..
T Consensus 812 ~~~------------------~aqiG~~Vpq~~~---~l~v~d~I~----~r------------------ig~~d~~~~~ 848 (1022)
T 2o8b_B 812 LAV------------------MAQMGCYVPAEVC---RLTPIDRVF----TR------------------LGASDRIMSG 848 (1022)
T ss_dssp HHH------------------HHTTTCCEESSEE---EECCCSBEE----EE------------------CC--------
T ss_pred HHH------------------HhheeEEeccCcC---CCCHHHHHH----HH------------------cCCHHHHhhc
Confidence 642 1222349999763 456655441 01 2222221111
Q ss_pred ccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 165 IGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA-LNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 165 vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~-~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
...+|++++ ++++|++++++|+++||||||+|+|+... ..++.+|+.++++.|+++|++||+++. +..++|+
T Consensus 849 -----~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~ 921 (1022)
T 2o8b_B 849 -----ESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQN 921 (1022)
T ss_dssp ------CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSC
T ss_pred -----hhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCc
Confidence 135777666 49999999999999999999999999985 557899999976558999999999874 6778999
Q ss_pred EEEeeCCeEE--EEcChhH
Q 044112 244 ILLLSKGTVV--HHGSLDL 260 (610)
Q Consensus 244 v~~L~~G~iv--~~g~~~~ 260 (610)
+.++ +|++. +.|++++
T Consensus 922 ~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 922 VAVR-LGHMACMVENECED 939 (1022)
T ss_dssp SSEE-EEEEEEC-------
T ss_pred ceee-cCeEEEEEecCccc
Confidence 9887 58887 5565543
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=3.9e-20 Score=206.15 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=119.5
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR 134 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~ 134 (610)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.+++|++. .++.++. .
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~---G~--------------~vi~~~~ee~~----~~l~~~~---~- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN---KE--------------RAILFAYEESR----AQLLRNA---Y- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT---TC--------------CEEEEESSSCH----HHHHHHH---H-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC---CC--------------CEEEEEEeCCH----HHHHHHH---H-
Confidence 5689999999999999999999999999987542 32 12456666541 1222222 1
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHH-----HHH
Q 044112 135 LRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSA-----SAL 209 (610)
Q Consensus 135 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~-----~~~ 209 (610)
+.+.+ +++ +...|+.+..+... ..|||||+||+.+|+++..+|+++++| ||+|||.. .+.
T Consensus 330 -~~g~~-------~~~-~~~~g~~~~~~~~p-----~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 330 -SWGMD-------FEE-MERQNLLKIVCAYP-----ESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp -TTSCC-------HHH-HHHTTSEEECCCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred -HcCCC-------HHH-HHhCCCEEEEEecc-----ccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 11212 112 23456666555443 689999999999999999999999999 99999999 999
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCC----------cHHHHHhcceEEEeeCCe
Q 044112 210 NVASLLKYMAVKQGKTIVLTIHQP----------GFRILELFDQILLLSKGT 251 (610)
Q Consensus 210 ~i~~~L~~la~~~g~tvi~~~H~~----------~~~i~~~~D~v~~L~~G~ 251 (610)
.+.++++.++ +.|+|||+++|+. . .+..++|++++|++|+
T Consensus 395 ~i~~ll~~l~-~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAK-QEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHH-HTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHH-hCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEEE
Confidence 9999999886 4699999999998 4 4678999999999886
No 92
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.79 E-value=1.3e-19 Score=212.17 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=111.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHH--------HCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDIL--------AGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLF 120 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L--------~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~ 120 (610)
.+++|+++.+++|++++|+||||||||||||++ .|...|. ++.. ++.+ +.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa--~~~~---------------~~~~---d~-- 707 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPC--ESAE---------------VSIV---DC-- 707 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSE--EEEE---------------EECC---SE--
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccc--cccc---------------chHH---HH--
Confidence 689999999999999999999999999999999 4433221 1110 1100 00
Q ss_pred CCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHH--HhCCCEEEEeC
Q 044112 121 PLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDL--VHDPAVLLIDE 198 (610)
Q Consensus 121 ~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL--~~~p~llllDE 198 (610)
++..+|+.+.. .+++|+|++++..+|+++ +++|+++||||
T Consensus 708 ------------------------------i~~~ig~~d~l--------~~~lStf~~e~~~~a~il~~a~~~sLlLLDE 749 (934)
T 3thx_A 708 ------------------------------ILARVGAGDSQ--------LKGVSTFMAEMLETASILRSATKDSLIIIDE 749 (934)
T ss_dssp ------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEES
T ss_pred ------------------------------HHHhcCchhhH--------HHhHhhhHHHHHHHHHHHHhccCCcEEEEeC
Confidence 11112222111 147888888888888888 99999999999
Q ss_pred CCCCCCHHHHHHH-HHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhH
Q 044112 199 PTSGLDSASALNV-ASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDL 260 (610)
Q Consensus 199 PtsgLD~~~~~~i-~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~ 260 (610)
||+|||+.....+ ..+++.++++.|+++|++||+.+ +.+++|++..+.+|++...++.++
T Consensus 750 p~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 750 LGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp CSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCc
Confidence 9999999999888 67778887556899999999964 678999999999999998877654
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.79 E-value=8.4e-21 Score=189.66 Aligned_cols=169 Identities=16% Similarity=0.084 Sum_probs=108.3
Q ss_pred cccce-eEEEeCceEEEEECCCCCcHHHHHHHHH--CCCCCCCceeEEEECCEeCCh--hcccceEEEEccCCCCCCCCC
Q 044112 50 ILKNV-NCEARPGEIMAIVGPSGAGKTTLLDILA--GMIPLRRVSGSVLVNEQPMNI--TQFRRISGYVTQDEVLFPLLT 124 (610)
Q Consensus 50 iL~~v-s~~i~~Ge~~ailG~nGaGKSTLL~~L~--g~~~~~~~~G~I~~~g~~~~~--~~~~~~~~yv~Q~~~l~~~lT 124 (610)
.|+++ .+.+++||+++|+||||||||||+++|+ |..+++ +|.+.+++..... ....+.+++++|+....+.++
T Consensus 18 ~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 95 (251)
T 2ehv_A 18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIA 95 (251)
T ss_dssp TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEE
T ss_pred hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEE
Confidence 34443 2489999999999999999999999999 663333 6777777765322 122345677777655555555
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044112 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLD 204 (610)
Q Consensus 125 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD 204 (610)
+.++....... ........+ ...+.++..+...+..-..+|+++++||||++||
T Consensus 96 ~~~~~~~~~~~--------~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld 149 (251)
T 2ehv_A 96 IVDGVSSVVGL--------PSEEKFVLE------------------DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp EEC---------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHH
T ss_pred EEEcccccccc--------ccccceecc------------------CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHh
Confidence 55543221110 000000000 1233444444444444468999999999999998
Q ss_pred -----HHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHH---------HHhc-ceEEEee
Q 044112 205 -----SASALNVASLLKYMAVKQGKTIVLTIHQPGFRI---------LELF-DQILLLS 248 (610)
Q Consensus 205 -----~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i---------~~~~-D~v~~L~ 248 (610)
+..+..+.++++.+++ .|+|||+++|+.+. + ..+| |++++|+
T Consensus 150 ~~~d~~~~~~~l~~l~~~l~~-~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 150 RLEEERKIREVLLKLNTILLE-MGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HSSSGGGHHHHHHHHHHHHHH-HCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHH-CCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 6777779999998865 59999999999874 5 5788 9999996
No 94
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.78 E-value=5.6e-19 Score=204.88 Aligned_cols=133 Identities=23% Similarity=0.385 Sum_probs=111.1
Q ss_pred CCCCHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhCC
Q 044112 121 PLLTVKETLMYSARLRLHVGL--------NRAKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHDP 191 (610)
Q Consensus 121 ~~lTv~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p 191 (610)
..+||.|++.|...+.++... ++..+++ +.|+.+||... .++.+ .+|||||||||.||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~-----~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBG-----GGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcc-----ccCCHHHHHHHHHHHHHhhCC
Confidence 358999999997766543210 2334455 45899999865 67776 599999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 192 --AVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 192 --~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
++|+|||||+|||+.....++++|+++. +.|.|||+++|+++ ..+.+|+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl~--~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMR-DLGNTLIVVEHDED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHH-TTTCEEEEECCCHH--HHHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCHH--HHHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 9999999999999999999999999996 56999999999986 35689999999 789999999998753
No 95
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=1.6e-21 Score=202.28 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=88.7
Q ss_pred ccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC-CCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCC
Q 044112 45 PPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM-IPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLL 123 (610)
Q Consensus 45 ~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~-~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~l 123 (610)
+.+ .+++++++++ +|+||||||||||++.|+|. ..+. +| |.++|.++......+.+++++|++.....+
T Consensus 9 ~~~-~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~--~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~l 78 (301)
T 2qnr_A 9 HRK-SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE--RV-ISGAAEKIERTVQIEASTVEIEERGVKLRL 78 (301)
T ss_dssp ----------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEE
T ss_pred CCE-EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC--CC-cccCCcccCCcceEeeEEEEecCCCcccCc
Confidence 444 7999999998 99999999999999999997 6554 78 888888764322235679999998888889
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC-C
Q 044112 124 TVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS-G 202 (610)
Q Consensus 124 Tv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts-g 202 (610)
|+.|+..++.... ..+..+..++.+ .+..+..+ +++|||||||+.+|++++ ++++||||+ |
T Consensus 79 tv~Dt~g~~~~~~---~~e~~~~l~~~l------~~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 79 TVVDTPGYGDAIN---CRDCFKTIISYI------DEQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EEEEEC--------------CTTHHHHH------HHHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred chhhhhhhhhhcC---cHHHHHHHHHHH------HHHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 9999988764321 001111112221 12233444 589999999999888875 999999998 5
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 203 LDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
||+... +.++++.++.+.++|++.||..
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999873 5666665545789999999974
No 96
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.78 E-value=1.5e-20 Score=185.44 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=99.8
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCC-----ceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRR-----VSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLM 130 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~-----~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~ 130 (610)
+-+++||+++|+||||||||||+++|+|...+.+ ..|.+++++.+... ++.+++++|+..+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654421 13466666653210 1123344444333332 3333322
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH-hhHHHHHHHHHh-------CCCEEEEeCCCCC
Q 044112 131 YSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE-KRRVSIGVDLVH-------DPAVLLIDEPTSG 202 (610)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~aL~~-------~p~llllDEPtsg 202 (610)
+. ...++++ ++++..+.+++. +|+++++||||++
T Consensus 96 ~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 137 (231)
T 4a74_A 96 VA--------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 137 (231)
T ss_dssp EE--------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHH
T ss_pred EE--------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHH
Confidence 11 1223333 233555555555 8999999999999
Q ss_pred CCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEecCCcH---HHHHhcceEEEeeCCe
Q 044112 203 LDSA-------S-----ALNVASLLKYMAVKQGKTIVLTIHQPGF---RILELFDQILLLSKGT 251 (610)
Q Consensus 203 LD~~-------~-----~~~i~~~L~~la~~~g~tvi~~~H~~~~---~i~~~~D~v~~L~~G~ 251 (610)
+|+. . ..++++.|++++++.|+|||+++|..+. .+...+|+++.|++|+
T Consensus 138 l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 138 FRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 9984 2 2378888888887779999999995431 2678899999998753
No 97
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=9.7e-19 Score=203.57 Aligned_cols=135 Identities=23% Similarity=0.383 Sum_probs=110.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCCH--------HHHHHHHHHHHHHcCCccc-ccccccCCCCCccCHHHhhHHHHHHHHHhC
Q 044112 120 FPLLTVKETLMYSARLRLHVGL--------NRAKARVSELLKELGLEHV-ANVRIGGESSRGISGGEKRRVSIGVDLVHD 190 (610)
Q Consensus 120 ~~~lTv~E~l~~~~~~~~~~~~--------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSgGerqRv~ia~aL~~~ 190 (610)
+..+||.|.+.|...+.++... ++..+++ +.|+.+||... .++.+ .+|||||||||.||++|..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~-----~tLSGGEkQRV~LA~aL~~~ 539 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAA-----ATLSGGEAQRIRLATQIGSG 539 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBG-----GGCCHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCc-----ccCCHHHHHHHHHHHHHhhC
Confidence 4568999999995444332100 2334455 35888999865 67766 59999999999999999999
Q ss_pred --CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEe------eCCeEEEEcChhHHH
Q 044112 191 --PAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLL------SKGTVVHHGSLDLLE 262 (610)
Q Consensus 191 --p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L------~~G~iv~~g~~~~~~ 262 (610)
|++|+|||||+|||+.....+.+.|+++. +.|.|||+++|+++ ..+.+|+|++| ++|++++.|+++++.
T Consensus 540 ~~~~llILDEPTagLdp~~~~~L~~~L~~Lr-~~G~TVIvVeHdl~--~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~ 616 (993)
T 2ygr_A 540 LVGVLYVLDEPSIGLHQRDNRRLIETLTRLR-DLGNTLIVVEHDED--TIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616 (993)
T ss_dssp CCSCEEEEECTTTTCCHHHHHHHHHHHHHHH-HTTCEEEEECCCHH--HHHTCSEEEEECSSSGGGCCSCCEEECHHHHH
T ss_pred CCCcEEEEeCcccCCCHHHHHHHHHHHHHHH-HcCCEEEEECCCHH--HHHhCCEEEEecCccccCCCEEEEeeCHHHhh
Confidence 58999999999999999999999999996 46999999999986 35689999999 689999999998865
Q ss_pred H
Q 044112 263 H 263 (610)
Q Consensus 263 ~ 263 (610)
+
T Consensus 617 ~ 617 (993)
T 2ygr_A 617 R 617 (993)
T ss_dssp H
T ss_pred h
Confidence 3
No 98
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.76 E-value=6.1e-20 Score=214.41 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=105.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.|++|+|+++++|++++|+||||||||||||++++..... ..| ..+... ...++ .-+.++..+.+.|+
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~g------~~vpa~--~~~i~---~~d~i~~~ig~~d~ 728 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QIG------SYVPAE--EATIG---IVDGIFTRMGAADN 728 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HHT------CCBSSS--EEEEE---CCSEEEEEC-----
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hcC------ccccch--hhhhh---HHHHHHHhCChHHH
Confidence 7999999999999999999999999999999998652110 011 011000 00111 11222222222221
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
.... ...+|+|++|++.|+++ +++|+++||||||+|||+...
T Consensus 729 --------------------------------l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~ 770 (918)
T 3thx_B 729 --------------------------------IYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDG 770 (918)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHH
T ss_pred --------------------------------HHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHH
Confidence 1111 14789999999999998 899999999999999999999
Q ss_pred HHHH-HHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE-eeCCeEEE
Q 044112 209 LNVA-SLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL-LSKGTVVH 254 (610)
Q Consensus 209 ~~i~-~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~ 254 (610)
..+. .+++.++++.|.|||++||+++ +.+++|+.-- +.++++.+
T Consensus 771 ~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 771 IAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 9997 7888887656999999999975 4577776532 44455544
No 99
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.76 E-value=2.9e-21 Score=188.98 Aligned_cols=147 Identities=16% Similarity=0.094 Sum_probs=117.2
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCC--CCCCHHHHHHHHHHh
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLF--PLLTVKETLMYSARL 135 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~--~~lTv~E~l~~~~~~ 135 (610)
.++|++++|+||||||||||+++|+|++.+ .++|++|++.++ +.+|++|+..+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 578999999999999999999999998532 479999998876 5689998865532
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHh----hHHHHHHHHHhCCCEEEEeCCCCC-------CC
Q 044112 136 RLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEK----RRVSIGVDLVHDPAVLLIDEPTSG-------LD 204 (610)
Q Consensus 136 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer----qRv~ia~aL~~~p~llllDEPtsg-------LD 204 (610)
..+.....+++.+.++.+++.+..+.++ ..+|+||| ||+++|++++.+|+++++||||++ ||
T Consensus 60 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld 132 (211)
T 3asz_A 60 --DHPDAFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVD 132 (211)
T ss_dssp --TSGGGBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEE
T ss_pred --CChhhhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEe
Confidence 1111222456777888888877666554 58999964 788999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 205 SASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 205 ~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
+.....+.+.+++..++.|+|++.++|+..
T Consensus 133 ~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 133 ADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998865556899999999743
No 100
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.75 E-value=2.6e-19 Score=181.82 Aligned_cols=133 Identities=20% Similarity=0.339 Sum_probs=99.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+|+++| +++|++++|+||||||||||+++|+|++++. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~-~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV-FKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-CCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-cCCcceeeeHH------------
Confidence 5899999 8999999999999999999999999998641 279999998765210 11111222221
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
.+|++. ..+ |++||++|..+|+++++|||| |+.+.
T Consensus 79 -------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 79 -------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 122211 122 899999999999999999999 99886
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 209 LNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 209 ~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
..++ +. ++ .|.+|++++|+.+ +.+.+|+++.|..
T Consensus 114 ~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 33 5899999999986 4688999988864
No 101
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=3.7e-18 Score=158.40 Aligned_cols=80 Identities=21% Similarity=0.392 Sum_probs=71.7
Q ss_pred CCCccCHHHhhHHHHH------HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 169 SSRGISGGEKRRVSIG------VDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 169 ~~~~LSgGerqRv~ia------~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
.+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||++||++. +.+.+|
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~~--~~~~~d 130 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDEE--LKDAAD 130 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCGG--GGGGCS
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChHH--HHHhCC
Confidence 4579999999999886 899999999999999999999999999999999865 4899999999983 578999
Q ss_pred eEEEee--CCe
Q 044112 243 QILLLS--KGT 251 (610)
Q Consensus 243 ~v~~L~--~G~ 251 (610)
++++|+ +|.
T Consensus 131 ~ii~l~~~~g~ 141 (148)
T 1f2t_B 131 HVIRISLENGS 141 (148)
T ss_dssp EEEEEEEETTE
T ss_pred EEEEEEcCCCe
Confidence 999994 564
No 102
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.73 E-value=8.4e-20 Score=189.35 Aligned_cols=150 Identities=17% Similarity=0.114 Sum_probs=110.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChh-------cc--cceEEEEccCCCCCCCCCHHHHHH
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNIT-------QF--RRISGYVTQDEVLFPLLTVKETLM 130 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~-------~~--~~~~~yv~Q~~~l~~~lTv~E~l~ 130 (610)
+|++++|+||||||||||+++|+|+++++ +|+|.++|.++... .+ ++.++|++|++.+.|.+|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 79999999999999999999999999876 89999999986321 11 346899999999999999999998
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044112 131 YSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALN 210 (610)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 210 (610)
++..-.. . ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+..+
T Consensus 179 ~~~~~~~--------d--~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~ 235 (304)
T 1rj9_A 179 AMKARGY--------D--LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQN 235 (304)
T ss_dssp HHHHHTC--------S--EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTH
T ss_pred HHHhCCC--------C--EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHH
Confidence 7532110 0 012233344332222 3455568999999999999994444 455555556
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCc
Q 044112 211 VASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 211 i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
+++.++++.++.|.|+|++||+..
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHcCCcEEEEECCcc
Confidence 777777776656899999999854
No 103
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.73 E-value=1e-17 Score=181.99 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=68.3
Q ss_pred CccCHHHhhHHHHHHHHH----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE
Q 044112 171 RGISGGEKRRVSIGVDLV----HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL 246 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~----~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~ 246 (610)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.+ .+.++|++||++ +....+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~--~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCH--HHHHhCCEEEE
Confidence 459999999999999999 57999999999999999999999999999853 478999999995 46789999999
Q ss_pred eeC
Q 044112 247 LSK 249 (610)
Q Consensus 247 L~~ 249 (610)
+..
T Consensus 409 ~~~ 411 (430)
T 1w1w_A 409 VYR 411 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 963
No 104
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.73 E-value=4.7e-20 Score=208.60 Aligned_cols=193 Identities=17% Similarity=0.236 Sum_probs=119.6
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccce----------eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNV----------NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
.++.+||+..+..+ .+ .+|+.+ +++++. +||+|||||||||||++|+|+..|
T Consensus 10 ~i~~~~l~~~~~~~--------------~r-~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 10 SVAENNLCSQYEEK--------------VR-PCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp ----------CHHH--------------HH-HHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--
T ss_pred hhhhhhhhHHHHHH--------------HH-HHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC
Confidence 57889999888321 11 333333 355554 999999999999999999999866
Q ss_pred CCceeEEEECCEeCC------hhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccc
Q 044112 88 RRVSGSVLVNEQPMN------ITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVA 161 (610)
Q Consensus 88 ~~~~G~I~~~g~~~~------~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 161 (610)
+.+|.|+++|.++. ...+++.++|++|+..+++.+||+|++.++........ -++
T Consensus 72 -~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~--------------~~~---- 132 (608)
T 3szr_A 72 -RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG--------------MGI---- 132 (608)
T ss_dssp ------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS--------------SCC----
T ss_pred -CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc--------------ccc----
Confidence 13899999998852 13567889999999999999999999988643211000 011
Q ss_pred cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHH-HhCCcEEEEEecCCc
Q 044112 162 NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEP------TSGLDSASALNVASLLKYMA-VKQGKTIVLTIHQPG 234 (610)
Q Consensus 162 ~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP------tsgLD~~~~~~i~~~L~~la-~~~g~tvi~~~H~~~ 234 (610)
| ++++.++.+...+|+++++||| |+|||+..+.++.++++++. +..+.++++++|+.+
T Consensus 133 ------------s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 133 ------------S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp ------------C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred ------------c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 1 1112222223358999999999 99999999999999999964 345788899999976
Q ss_pred H------HHHHhc-----ceEEEeeCCeEEEEcChhHHH
Q 044112 235 F------RILELF-----DQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 235 ~------~i~~~~-----D~v~~L~~G~iv~~g~~~~~~ 262 (610)
. .+.+.. ..|.++.++.++..|+.+++.
T Consensus 198 ~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 198 IATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp TTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred hccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 2 222222 357888888888777665443
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=6e-19 Score=203.15 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=100.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC-CCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP-LRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~-~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
.+++|+|++ |++++|+||||||||||||+|+|+.. +. .|.+. . ..+..+++++| +++.+++.|
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~--~G~~v------p--a~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ--VGSFV------P--AEEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT--TTCCB------S--SSEEEECCCSE---EEEECCC--
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc--cCcee------e--hhccceeeHHH---hhccCCHHH
Confidence 799999999 99999999999999999999999863 22 45431 1 12345777766 556666666
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHH--HhCCCEEEEeCC---CCC
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDL--VHDPAVLLIDEP---TSG 202 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL--~~~p~llllDEP---tsg 202 (610)
|+. .++|+|+++++.+++++ +++|++++|||| |++
T Consensus 631 ~l~----------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~ 670 (765)
T 1ewq_A 631 DLA----------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSS 670 (765)
T ss_dssp --------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCH
T ss_pred HHH----------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCC
Confidence 542 25799999999999999 999999999999 999
Q ss_pred CCHHHH-HHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 203 LDSASA-LNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 203 LD~~~~-~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
||..+. ..+++.|++ .|.|+|++||+.+ +.+++
T Consensus 671 lD~~~~~~~i~~~L~~----~g~~vl~~TH~~~--l~~~~ 704 (765)
T 1ewq_A 671 LDGVAIATAVAEALHE----RRAYTLFATHYFE--LTALG 704 (765)
T ss_dssp HHHHHHHHHHHHHHHH----HTCEEEEECCCHH--HHTCC
T ss_pred cCHHHHHHHHHHHHHh----CCCEEEEEeCCHH--HHHhh
Confidence 998875 578887765 3789999999974 45554
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.72 E-value=1.5e-19 Score=191.27 Aligned_cols=165 Identities=20% Similarity=0.169 Sum_probs=105.7
Q ss_pred cccce-eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCce----eE-EEECCEeCChhcccceEEEEccCCCCCCCC
Q 044112 50 ILKNV-NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVS----GS-VLVNEQPMNITQFRRISGYVTQDEVLFPLL 123 (610)
Q Consensus 50 iL~~v-s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~----G~-I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~l 123 (610)
.|+++ ++.+++|++++|+||||||||||++.|++.....+.+ |+ |++++++.. .++++++++|+..+++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-
Confidence 46665 6899999999999999999999999999987321224 67 888886541 12345667776554443
Q ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH-------hCCCEEEE
Q 044112 124 TVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV-------HDPAVLLI 196 (610)
Q Consensus 124 Tv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~-------~~p~llll 196 (610)
++.||+.+... .-|.+++|++.++++++ .+|+++++
T Consensus 195 ~v~~ni~~~~~-------------------------------------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIl 237 (349)
T 1pzn_A 195 EVLKHIYVARA-------------------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 237 (349)
T ss_dssp HHGGGEEEEEC-------------------------------------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEE
T ss_pred HHhhCEEEEec-------------------------------------CChHHHHHHHHHHHHHHHHhccccCCCCEEEE
Confidence 44444432110 01344555555555555 68999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEc
Q 044112 197 DEPTSGLDSAS------------ALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHG 256 (610)
Q Consensus 197 DEPtsgLD~~~------------~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g 256 (610)
||||+++|+.. ..++++.|++++++.|+|||+++|... +....++.......|+++.++
T Consensus 238 Ds~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 238 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp ETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTT
T ss_pred eCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeec
Confidence 99999999852 467788888888878999999999876 344445555556666655443
No 107
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.72 E-value=1.4e-18 Score=171.26 Aligned_cols=168 Identities=17% Similarity=0.096 Sum_probs=113.3
Q ss_pred ccccceeE-EEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccc---eEEEEccCCCCCCCCC
Q 044112 49 CILKNVNC-EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRR---ISGYVTQDEVLFPLLT 124 (610)
Q Consensus 49 ~iL~~vs~-~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~---~~~yv~Q~~~l~~~lT 124 (610)
..|+++.+ .+++|++++|+||||||||||++.|++...+. +|.|.+.+.+.......+ ..++.+|+.... .++
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 86 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLI 86 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEE
Confidence 57888885 89999999999999999999999999876543 566666554432211111 112211110000 000
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCC--EEEEeCCCCC
Q 044112 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPA--VLLIDEPTSG 202 (610)
Q Consensus 125 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~--llllDEPtsg 202 (610)
+ ++.....++ ...+ ....|.+|+++...+.....+|+ ++++||||++
T Consensus 87 ~----------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 87 I----------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp E----------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred E----------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 0 000000001 0001 12459999998888888888999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHHHhCCcEEEEEecCCc-------HHHHHhcceEEEeeCC
Q 044112 203 L--DSASALNVASLLKYMAVKQGKTIVLTIHQPG-------FRILELFDQILLLSKG 250 (610)
Q Consensus 203 L--D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~-------~~i~~~~D~v~~L~~G 250 (610)
+ |+....++++.|++++++.|.|||+++|+.+ ..+.+++|++++|++.
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 7 9999999999999998778999999999983 2378899999999864
No 108
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.71 E-value=1.2e-18 Score=201.76 Aligned_cols=156 Identities=14% Similarity=0.142 Sum_probs=109.7
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+++|+|++ ++|++++|+||||||||||||+|+|+.... ..| ..+... +..++++.| +++.+++.|+
T Consensus 596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~G------~~vpa~--~~~i~~~~~---i~~~~~~~d~ 662 (800)
T 1wb9_A 596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YIG------SYVPAQ--KVEIGPIDR---IFTRVGAADD 662 (800)
T ss_dssp CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TTT------CCBSSS--EEEECCCCE---EEEEEC----
T ss_pred eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hcC------cccchh--cccceeHHH---HHhhCCHHHH
Confidence 699999999 999999999999999999999999974221 112 222111 234566554 5566666665
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
+..+. +.+|+|++ +++.+...+++|++++||||++|+|+...
T Consensus 663 l~~~~-------------------------------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~~d~ 704 (800)
T 1wb9_A 663 LASGR-------------------------------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTSTYDG 704 (800)
T ss_dssp --------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSSSHH
T ss_pred HHhhh-------------------------------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCChhHH
Confidence 53210 23566665 45555567899999999999999999887
Q ss_pred HHH-HHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcC
Q 044112 209 LNV-ASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGS 257 (610)
Q Consensus 209 ~~i-~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~ 257 (610)
..+ ..+++.++++.|.++|++||+++ +..++|++..+.+|++.+...
T Consensus 705 ~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 705 LSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 776 78888887545899999999985 457899888888888766543
No 109
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.70 E-value=2.4e-17 Score=168.60 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=108.1
Q ss_pred EEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 044112 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLR 136 (610)
Q Consensus 57 ~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~ 136 (610)
.+++|++++|+||||||||||++.+++... +|++ +.|.+.. ....+.|+..++.. ..+.+.+ ..+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~---~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRL---HALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHH---HHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHH---HHHH
Confidence 489999999999999999999999998653 3555 3354331 12457788766532 0111111 1111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC--CCCHHH---HHHH
Q 044112 137 LHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS--GLDSAS---ALNV 211 (610)
Q Consensus 137 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts--gLD~~~---~~~i 211 (610)
.... ....+++++.+++.+..+..+ ..||+||+|++ ++++.+|+++++||||+ ++|... ..++
T Consensus 92 ~~~~----~~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 92 AHLS----AEERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp TTSC----HHHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred hhcC----hhhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 1111 234567788888877665544 68999998875 68889999999999999 999754 4889
Q ss_pred HHHHHHHHHhCCcEEEEEecCCc
Q 044112 212 ASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 212 ~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
++.|++++++.|+|||+++|+..
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHcCCEEEEEecCCC
Confidence 99999998777999999999975
No 110
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=2.3e-19 Score=173.54 Aligned_cols=156 Identities=22% Similarity=0.198 Sum_probs=105.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV 139 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~ 139 (610)
||+++|+||||||||||+++|+|+++ + +| |.++|.+... ...++.+||++|+. ... ++++ +++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---hcccc--
Confidence 78999999999999999999999987 5 79 9999987643 34577899999975 111 1111 01100
Q ss_pred CHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHH-HHHH---HHHhCCCEEEEeC--CCCCCCHHHHHHHH
Q 044112 140 GLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRV-SIGV---DLVHDPAVLLIDE--PTSGLDSASALNVA 212 (610)
Q Consensus 140 ~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv-~ia~---aL~~~p~llllDE--PtsgLD~~~~~~i~ 212 (610)
+..+ ..+..+| .....+|+|||+++ ++++ |+..+|+++++|| |+..+|......+.
T Consensus 67 ----------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~ 129 (189)
T 2i3b_A 67 ----------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVR 129 (189)
T ss_dssp ----------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHH
T ss_pred ----------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHH
Confidence 1111 0112333 23457999999998 4444 5789999999999 89999987655555
Q ss_pred HHHHHHHHhCCcEEEE----EecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 213 SLLKYMAVKQGKTIVL----TIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 213 ~~L~~la~~~g~tvi~----~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
++++ . ..++|+ ++|+.+ ..+.|++..+.+|+++.-
T Consensus 130 ~~l~----~-~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 130 QTLS----T-PGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp HHHH----C-SSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEEC
T ss_pred HHHh----C-CCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEe
Confidence 5543 3 334443 238864 246788888888888754
No 111
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.65 E-value=1.8e-18 Score=168.14 Aligned_cols=174 Identities=12% Similarity=0.044 Sum_probs=99.3
Q ss_pred eEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC-----CCCCcee
Q 044112 18 RIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI-----PLRRVSG 92 (610)
Q Consensus 18 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~-----~~~~~~G 92 (610)
.|+++|+++.| + . .++++ +.+++|+.++|+|+||||||||+|.|+|.. .+ ..|
T Consensus 3 ~l~~~~~~~~~----------------~-~-~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~--~~G 60 (210)
T 1pui_A 3 NLNYQQTHFVM----------------S-A-PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSK--TPG 60 (210)
T ss_dssp --------CEE----------------E-E-SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------
T ss_pred chhhhhhhhee----------------e-c-CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccC--CCc
Confidence 47899999998 2 2 57888 889999999999999999999999999987 33 356
Q ss_pred EEEECCEeCChhcccceEEEEccCCCCC----CCCC---HHHHHHHHHHh-cC----------CCCHHHHHHHHHHHHHH
Q 044112 93 SVLVNEQPMNITQFRRISGYVTQDEVLF----PLLT---VKETLMYSARL-RL----------HVGLNRAKARVSELLKE 154 (610)
Q Consensus 93 ~I~~~g~~~~~~~~~~~~~yv~Q~~~l~----~~lT---v~E~l~~~~~~-~~----------~~~~~~~~~~v~~~l~~ 154 (610)
.+.+.+.-. .....-+ .+.+.+. +.-. .+..+....+. +. ........+.+.++++.
T Consensus 61 ~~~~~~~~~----~~~~~~l-~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 61 RTQLINLFE----VADGKRL-VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp --CCEEEEE----EETTEEE-EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH
T ss_pred cceeeEEEE----ecCCEEE-EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH
Confidence 554322100 0000011 1111110 0000 11122221110 00 00111223345566777
Q ss_pred cCCccc-ccccccCCCCCccCHHHhhH-HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCc
Q 044112 155 LGLEHV-ANVRIGGESSRGISGGEKRR-VSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGK 224 (610)
Q Consensus 155 lgL~~~-~~~~vg~~~~~~LSgGerqR-v~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~ 224 (610)
.++... ..+++ ..+|+||||| +..+++++.+|+++++|||||++|..+..++++.|.++.++ |.
T Consensus 136 ~~~~~~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~-~~ 201 (210)
T 1pui_A 136 SNIAVLVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE-MQ 201 (210)
T ss_dssp TTCCEEEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred cCCCeEEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh-cc
Confidence 777643 23333 4799999999 89999999999999999999999999999999999988643 53
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.65 E-value=4.1e-17 Score=172.66 Aligned_cols=128 Identities=23% Similarity=0.317 Sum_probs=89.9
Q ss_pred EEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 044112 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLR 136 (610)
Q Consensus 57 ~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~ 136 (610)
...+|++++|+|||||||||||++|+|.+++. .+|.|...+.++. ...+...+++.|.......+|.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~~~~~~----------- 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIE-FVHESKKCLVNQREVHRDTLGF----------- 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCC-SCCCCSSSEEEEEEBTTTBSCH-----------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHH-hhhhccccceeeeeeccccCCH-----------
Confidence 67899999999999999999999999998653 1466654443332 1122233455554322211121
Q ss_pred CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044112 137 LHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLK 216 (610)
Q Consensus 137 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~ 216 (610)
.+ +||++|..+|+++++|||| |..+ ++.+.
T Consensus 186 ---------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~----~~~~~ 215 (356)
T 3jvv_A 186 ---------------------------------------SE----ALRSALREDPDIILVGEMR---DLET----IRLAL 215 (356)
T ss_dssp ---------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHH----HHHHH
T ss_pred ---------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHH----HHHHH
Confidence 11 8999999999999999999 6555 34444
Q ss_pred HHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCC
Q 044112 217 YMAVKQGKTIVLTIHQPGFRILELFDQILLLSKG 250 (610)
Q Consensus 217 ~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G 250 (610)
+.+. .|++|++|+|+.+. + +.+||++.|..|
T Consensus 216 ~~~~-~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 216 TAAE-TGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHH-TTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHh-cCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 4453 59999999999984 4 889999998654
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=4.8e-18 Score=183.21 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=99.3
Q ss_pred eeEEEEeEEEEEecccccccccccccccccccccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 17 YRIRTKKLTYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 17 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
..|+++||+++| +.+ .+++|+|+++ +|+||||||||||+|+|+|...+.+..|.+.+
T Consensus 10 ~~l~~~~l~~~y----------------~~~-~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~ 66 (418)
T 2qag_C 10 GYVGFANLPNQV----------------YRK-SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSH 66 (418)
T ss_dssp -----CCCCCCT----------------TTT-TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-
T ss_pred CcEEEEecceeE----------------CCE-EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCccc
Confidence 358889988877 344 7999999998 99999999999999999999864311222222
Q ss_pred CCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH
Q 044112 97 NEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG 176 (610)
Q Consensus 97 ~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG 176 (610)
++.+ ....+.+++++|++.+++.+||.||+.++.... .......+.+.++ ..++.+
T Consensus 67 ~~~~---t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~----~~~~~~~i~~~i~-----------------~~~~~~ 122 (418)
T 2qag_C 67 RIKK---TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD----NSNCWQPVIDYID-----------------SKFEDY 122 (418)
T ss_dssp -------CCEEEEEECC------CEEEEEEECC---------------CHHHHHHHH-----------------HHHHHH
T ss_pred CCcc---ceeeeeEEEEEecCCcccceeeeechhhhhhcc----chhhHHHHHHHHH-----------------HHHHHH
Confidence 2111 112356899999998888999999998865321 0111111111121 246778
Q ss_pred HhhHHHHHHHHHhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 177 EKRRVSIGVDLVHDPA---VLLIDEPT-SGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 177 erqRv~ia~aL~~~p~---llllDEPt-sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
++||++||++++.+|+ ++++|||| .|||+... ++++++. . +.+||+++|..+
T Consensus 123 l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~-~v~iIlVinK~D 178 (418)
T 2qag_C 123 LNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-E-KVNIIPLIAKAD 178 (418)
T ss_dssp TTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-T-TSEEEEEEESTT
T ss_pred HHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-c-cCcEEEEEEccc
Confidence 8899999999999999 99999999 69999873 4455554 3 678888888654
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.63 E-value=4.5e-18 Score=168.25 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=102.4
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCH----HHHHH
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTV----KETLM 130 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv----~E~l~ 130 (610)
.-..++|++++|+||||||||||+++|+|+.+|++.+|.|.+.+++... ..++.++|++|++..|+.+|+ .|++.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~-~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP-GEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc-ccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 4467899999999999999999999999998753358999998876543 234568999997665554444 22221
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044112 131 YSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALN 210 (610)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~ 210 (610)
+.... .+.| +++ +.+++..+++++|| ||+.++.+
T Consensus 89 ~~~~~-----------------------------------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 89 VFGNY-----------------------------------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp ETTEE-----------------------------------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHhcc-----------------------------------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 11000 0111 121 34455668999999 99999999
Q ss_pred HHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHHHH
Q 044112 211 VASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRLR 266 (610)
Q Consensus 211 i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~~~ 266 (610)
+.+.+. .++||++++|+++. +.+ |+ +.+| .++++++...+.
T Consensus 123 i~~~l~-----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 123 IRQKMP-----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHCT-----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHcc-----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHH
Confidence 999875 37999999999863 443 43 6777 577777766554
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.60 E-value=5.3e-16 Score=151.69 Aligned_cols=155 Identities=18% Similarity=0.109 Sum_probs=103.0
Q ss_pred cccccee-EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 49 CILKNVN-CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs-~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
..|+++. +-+++|++++|.||||||||||++.|++ ..+ .+.+++ ..++. .+..
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~--~~v~~i-----------------~~~~~----~~~~- 60 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG--KKVAYV-----------------DTEGG----FSPE- 60 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC--SEEEEE-----------------ESSCC----CCHH-
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC--CcEEEE-----------------ECCCC----CCHH-
Confidence 4677776 4899999999999999999999999999 222 233333 22221 1111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH--hhHHHHHHHHHhC-CCEEEEeCCCCCCC
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE--KRRVSIGVDLVHD-PAVLLIDEPTSGLD 204 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe--rqRv~ia~aL~~~-p~llllDEPtsgLD 204 (610)
.+.-... ...... +++++.+. + ...|+++ ++++..+++++.+ |+++++||||+++|
T Consensus 61 ~~~~~~~-~~~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 61 RLVQMAE-TRGLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHHHH-TTTCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHHHHH-hcCCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 1111011 011111 11222221 1 2345554 5688888899986 99999999999999
Q ss_pred HH--------HHHHHHHHHHHHHHhCCcEEEEEecCCcH------------HHHHhcceEEEeeCC
Q 044112 205 SA--------SALNVASLLKYMAVKQGKTIVLTIHQPGF------------RILELFDQILLLSKG 250 (610)
Q Consensus 205 ~~--------~~~~i~~~L~~la~~~g~tvi~~~H~~~~------------~i~~~~D~v~~L~~G 250 (610)
+. ...++++.|++++++.|.|||+++|.... .+...+|.+++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 73 33557777888887779999999998651 367899999999864
No 116
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.60 E-value=1.2e-19 Score=174.44 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=114.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVG 140 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~ 140 (610)
|++++|+||||||||||+++|++. . +|++.++|.++... ...++++|.....+..|++|++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~---~--~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ---L--DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH---S--SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc---c--CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 789999999999999999999972 2 68899988654211 234677776654555688888876543211000
Q ss_pred HHHHHHHHHHHHHHcCCcccccccccCCCCCcc--CHHHhhHHHHHH------HHHhCCCEEEEeCCCCCCCHHHHHHHH
Q 044112 141 LNRAKARVSELLKELGLEHVANVRIGGESSRGI--SGGEKRRVSIGV------DLVHDPAVLLIDEPTSGLDSASALNVA 212 (610)
Q Consensus 141 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L--SgGerqRv~ia~------aL~~~p~llllDEPtsgLD~~~~~~i~ 212 (610)
...+++.+. ....... .+.+ |+|++|++.++. +++.+|+...+|| |||+..... .
T Consensus 74 -------~~~ild~~~-~~~~~~~-----~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 74 -------NDVVLDYIA-FPDEAEA-----LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp -------CEEEEESCC-CHHHHHH-----HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred -------CcEEEeecc-CHHHHHH-----HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 000111110 0000000 1235 899999988888 9999999888884 899988888 8
Q ss_pred HHHHHHHHhCCcEEEEEecC-CcHHHHHhcceEEEeeCCeEEEEcChhHHH
Q 044112 213 SLLKYMAVKQGKTIVLTIHQ-PGFRILELFDQILLLSKGTVVHHGSLDLLE 262 (610)
Q Consensus 213 ~~L~~la~~~g~tvi~~~H~-~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~ 262 (610)
+.++.+. +.+.+||.++|+ ++ ++.+.+|+|+ ++|+++..|+++.+.
T Consensus 137 ~~~~~~~-~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 137 EEFESKG-IDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHHTT-CCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHhhcC-CCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCchh
Confidence 8888875 457899999998 87 5889999999 999999999887543
No 117
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.56 E-value=1.7e-18 Score=184.15 Aligned_cols=165 Identities=16% Similarity=0.124 Sum_probs=104.9
Q ss_pred cccceeEEEeC--ceEEEEECCCCCcHHHHHHHHHCCCCCCCce----eEEEEC----CEeCC--hhcccceEEEEccCC
Q 044112 50 ILKNVNCEARP--GEIMAIVGPSGAGKTTLLDILAGMIPLRRVS----GSVLVN----EQPMN--ITQFRRISGYVTQDE 117 (610)
Q Consensus 50 iL~~vs~~i~~--Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~----G~I~~~----g~~~~--~~~~~~~~~yv~Q~~ 117 (610)
+.+.|++.+++ |+.++|+||||||||||+++|+|++++. + |++.++ |.+.. ..++ +.+++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~--~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT--SAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE--EECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC--cchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 56789999999 9999999999999999999999999875 6 666553 22110 0111 1123332221
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH-hCCCEEEE
Q 044112 118 VLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV-HDPAVLLI 196 (610)
Q Consensus 118 ~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~-~~p~llll 196 (610)
.++. .|+.||+.+ ++ .+..++.+ ..+|+|++||..+++++. .+|++++|
T Consensus 234 ~~~~-~t~~~nl~~-----------------------~~-~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 234 IDYA-VRHSHKIAF-----------------------ID-TDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp HHHH-HHHCSSEEE-----------------------ES-SCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred HHHH-HhccCCEEE-----------------------Ee-CCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 1100 111111110 00 11111111 356778888888888775 59999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 197 DE---PT------SGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 197 DE---Pt------sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|| |+ .++|+..+..+.+.|+++.++.|.+|++++|. + +..+++|++.++++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 99 65 58999999999999998866568899999975 3 35677777766643
No 118
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.56 E-value=8.8e-15 Score=139.17 Aligned_cols=88 Identities=25% Similarity=0.289 Sum_probs=72.0
Q ss_pred CCccCHHHhhHHHHHHHHHh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEE
Q 044112 170 SRGISGGEKRRVSIGVDLVH----DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~----~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~ 245 (610)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++++ +.++|+++|+.. +.+.+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~~--~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRDV--MMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCHH--HHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecHH--HHHhCCEEE
Confidence 46899999999999999975 4699999999999999999999999999863 468999999963 678999998
Q ss_pred Eee--CCeE-EEEcChhHH
Q 044112 246 LLS--KGTV-VHHGSLDLL 261 (610)
Q Consensus 246 ~L~--~G~i-v~~g~~~~~ 261 (610)
.+. +|.. +...+.++.
T Consensus 138 ~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEETTEEEEEECCHHHH
T ss_pred EEEecCCEEEEEEEEcHHH
Confidence 664 5643 334444443
No 119
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.55 E-value=1.2e-17 Score=160.18 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=98.6
Q ss_pred EEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChh-cccceEEEEccCCCCCCCCCHHHHHHHHHHh
Q 044112 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNIT-QFRRISGYVTQDEVLFPLLTVKETLMYSARL 135 (610)
Q Consensus 57 ~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~-~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~ 135 (610)
.+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++... ..++.++|++|+.. +.+||.|++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~--~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG--VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS--SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC--CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 3679999999999999999999999998 34 79999998764221 12234677777654 457899998775432
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCcccc--cccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHH
Q 044112 136 RLHVGLNRAKARVSELLKELGLEHVA--NVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVAS 213 (610)
Q Consensus 136 ~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~ 213 (610)
...... ...++.+++..++.... +.. +..+|+|++||+.++|++..+|+++ +|+.....+.+
T Consensus 79 ~~~~~~---~~~~~~~~~~~~l~~~~~~~~~-----~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGY---FVILDGVVRPDWLPAFTALARP-----LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSC---EEEECSCCCTTTTHHHHTTCSC-----EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCC---eEEEeccCcHHHHHHHHhcCCC-----eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 100000 00011111112222221 212 2479999999999999999999877 68888888888
Q ss_pred HHHHHHHhCCcEEEEEec
Q 044112 214 LLKYMAVKQGKTIVLTIH 231 (610)
Q Consensus 214 ~L~~la~~~g~tvi~~~H 231 (610)
.++.+.. .+..+|.++|
T Consensus 143 ~~~~l~~-~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGA-FEHHVLPVSG 159 (191)
T ss_dssp HTTCCGG-GGGGEEECTT
T ss_pred HHhccCc-ccccEEECCC
Confidence 7776643 2333444443
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.1e-16 Score=172.24 Aligned_cols=172 Identities=15% Similarity=0.135 Sum_probs=113.1
Q ss_pred ccccceeEEEeCceE--EEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHH
Q 044112 49 CILKNVNCEARPGEI--MAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~--~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
+ |+++|+++++|++ ++|+||||||||||+|+|+|..- .|.-.- . ......++.++|++|++.+++.+||.
T Consensus 29 ~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~~-~--~~~~~~~~~i~~v~Q~~~l~~~ltv~ 100 (427)
T 2qag_B 29 P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPAT-H--TQPGVQLQSNTYDLQESNVRLKLTIV 100 (427)
T ss_dssp C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC--------------CCSSCEEEEEEEEEEC--CEEEEEEE
T ss_pred e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcCC-C--CCccceEeeEEEEeecCccccccchh
Confidence 5 9999999999999 99999999999999999999842 222110 0 11122345799999999988899999
Q ss_pred HHHHHHHHhcCCCC----HHHHHHHHHHHHHHc-CCcc----ccccc----cc--CCCCCccCHHHhhHHHHHHHHHhCC
Q 044112 127 ETLMYSARLRLHVG----LNRAKARVSELLKEL-GLEH----VANVR----IG--GESSRGISGGEKRRVSIGVDLVHDP 191 (610)
Q Consensus 127 E~l~~~~~~~~~~~----~~~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSgGerqRv~ia~aL~~~p 191 (610)
||+.++........ .+..++..++.++.. ++.. ..+.+ +. .+...+++-.+ +.|+++|..++
T Consensus 101 D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~ 177 (427)
T 2qag_B 101 STVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKV 177 (427)
T ss_dssp EEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCS
T ss_pred hhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCC
Confidence 99877532110000 011233455666655 5432 12222 10 11124677666 78999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH-HHHhCCcEEEEEecC
Q 044112 192 AVLLIDEPTSGLDSASALNVASLLKY-MAVKQGKTIVLTIHQ 232 (610)
Q Consensus 192 ~llllDEPtsgLD~~~~~~i~~~L~~-la~~~g~tvi~~~H~ 232 (610)
+++++|||+..|.+.....+.+.+++ +. ..|..|+.++.+
T Consensus 178 ~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~-~~gi~I~~is~~ 218 (427)
T 2qag_B 178 NIIPIIAKADAISKSELTKFKIKITSELV-SNGVQIYQFPTD 218 (427)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHHB-TTBCCCCCCC--
T ss_pred CEEEEEcchhccchHHHHHHHHHHHHHHH-HcCCcEEecCCC
Confidence 99999999999999999999999987 65 568899888764
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.53 E-value=2.7e-18 Score=179.26 Aligned_cols=160 Identities=14% Similarity=0.052 Sum_probs=108.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC--------CCCCceeEEEECCEeCChh------------------cccceEEEE-
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI--------PLRRVSGSVLVNEQPMNIT------------------QFRRISGYV- 113 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~--------~~~~~~G~I~~~g~~~~~~------------------~~~~~~~yv- 113 (610)
=++++|+|+||||||||||.|.|.. .++ .|+|.++|.++... ++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d--~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~ 81 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE--FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLL 81 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS--CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec--CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHH
Confidence 3689999999999999999999986 344 89999999886421 233456776
Q ss_pred --ccCCCCCCCCCHHHHHHHHH--Hh--cC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHH
Q 044112 114 --TQDEVLFPLLTVKETLMYSA--RL--RL-HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVD 186 (610)
Q Consensus 114 --~Q~~~l~~~lTv~E~l~~~~--~~--~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 186 (610)
+|+..+++..+|.||..++. .+ +. ..+......+++.++..+++.+..+... ++|+||+||+..+++
T Consensus 82 ~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 82 DNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEE
T ss_pred hHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEE
Confidence 57766666778888765431 00 00 0000000111222334445555444433 689999999998899
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcc
Q 044112 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 187 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D 242 (610)
++.+|+++ ||| .++.+.|++++ .+.+|++++|++. ++..++|
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~~ 197 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLFN 197 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHhC
Confidence 99999987 999 78888888874 4789999999865 3444444
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.52 E-value=3.8e-17 Score=163.97 Aligned_cols=145 Identities=26% Similarity=0.300 Sum_probs=101.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHH---CCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhc
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILA---GMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLR 136 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~---g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~ 136 (610)
++++++|+||||||||||+++|+ |+..++ +|+|.++|.+.. ....+.+.+++|+..+++..|+.|++.......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~--~G~i~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS--SGHFLRENIKAS-TEVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE--HHHHHHHHHHTT-CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec--HHHHHHHHHhcC-ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 998765 888888775432 122334556678888888889999998754210
Q ss_pred ------C-CCCHHHHHHHHHHHHH--HcC------------CcccccccccCCCCCccCHHHhhHHHHHHHH-HhCCCEE
Q 044112 137 ------L-HVGLNRAKARVSELLK--ELG------------LEHVANVRIGGESSRGISGGEKRRVSIGVDL-VHDPAVL 194 (610)
Q Consensus 137 ------~-~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~vg~~~~~~LSgGerqRv~ia~aL-~~~p~ll 194 (610)
. +.+... ..++.+.+ ..+ ++...++.+ ..||| |+ +++ +.+|+++
T Consensus 103 ~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~l 168 (246)
T 2bbw_A 103 RGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVH 168 (246)
T ss_dssp TTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSST
T ss_pred CCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCccc
Confidence 0 111111 12222221 122 222333333 57999 55 677 9999999
Q ss_pred EEe----CCCCCCCHHHHHHHHHHHHHHHHh
Q 044112 195 LID----EPTSGLDSASALNVASLLKYMAVK 221 (610)
Q Consensus 195 llD----EPtsgLD~~~~~~i~~~L~~la~~ 221 (610)
+|| |||+|||..+...+.+.|+++.++
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999 999999999999999999988643
No 123
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.52 E-value=1.4e-14 Score=143.83 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=91.5
Q ss_pred ccccee-EEEeCceEEEEECCCCCcHHHHHHHHHC--CCCCC---CceeEEEECCEeC-Chhc---ccceEEEEccCCCC
Q 044112 50 ILKNVN-CEARPGEIMAIVGPSGAGKTTLLDILAG--MIPLR---RVSGSVLVNEQPM-NITQ---FRRISGYVTQDEVL 119 (610)
Q Consensus 50 iL~~vs-~~i~~Ge~~ailG~nGaGKSTLL~~L~g--~~~~~---~~~G~I~~~g~~~-~~~~---~~~~~~yv~Q~~~l 119 (610)
-|+.+= +-+++|++++|+||||||||||++.|++ ..++. ...|.+++++.+. .... ..+.+++.+|
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~---- 87 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS---- 87 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH----
Confidence 344432 6799999999999999999999999999 44331 1256677766542 1110 1111111111
Q ss_pred CCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhH-HHHHHHHH--hCCCEEEE
Q 044112 120 FPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRR-VSIGVDLV--HDPAVLLI 196 (610)
Q Consensus 120 ~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR-v~ia~aL~--~~p~llll 196 (610)
++++.+.+ ....+..+... +.-+.+++ .+|+++++
T Consensus 88 ------------------------------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~llii 125 (243)
T 1n0w_A 88 ------------------------------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIV 125 (243)
T ss_dssp ------------------------------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred ------------------------------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 11111100 01334444332 23233333 48999999
Q ss_pred eCCCCCCCHH-------H-----HHHHHHHHHHHHHhCCcEEEEEecCCcHHHH-------------------HhcceEE
Q 044112 197 DEPTSGLDSA-------S-----ALNVASLLKYMAVKQGKTIVLTIHQPGFRIL-------------------ELFDQIL 245 (610)
Q Consensus 197 DEPtsgLD~~-------~-----~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~-------------------~~~D~v~ 245 (610)
|||++.+|+. . ..++++.|++++++.|+|||+++|.... .. ..+|.++
T Consensus 126 D~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~-~~~~~~~~~~~~~~~g~~~~~~~~d~vi 204 (243)
T 1n0w_A 126 DSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQ-VDGAAMFAADPKKPIGGNIIAHASTTRL 204 (243)
T ss_dssp ETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEE
T ss_pred eCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeec-CCCccccCCCcccCCccChhhhcCcEEE
Confidence 9999999985 3 4567777888887779999999996542 22 2789999
Q ss_pred EeeCC
Q 044112 246 LLSKG 250 (610)
Q Consensus 246 ~L~~G 250 (610)
+|++|
T Consensus 205 ~l~~~ 209 (243)
T 1n0w_A 205 YLRKG 209 (243)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99865
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.52 E-value=3.3e-15 Score=158.57 Aligned_cols=138 Identities=14% Similarity=0.195 Sum_probs=102.4
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe-CChhcccceEEEEc-cCCCCCCCCCHHH
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP-MNITQFRRISGYVT-QDEVLFPLLTVKE 127 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~-~~~~~~~~~~~yv~-Q~~~l~~~lTv~E 127 (610)
+++++|+.+++|++++|+||||||||||+|+|+|+++++ +|.|.++|.. +.....++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 349999999999999999999999999999999999876 9999999853 22223567789998 65431
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSAS 207 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 207 (610)
+++++..+|-.|+.++..+|+.+++|||..
T Consensus 234 --------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~------ 263 (361)
T 2gza_A 234 --------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG------ 263 (361)
T ss_dssp -------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS------
T ss_pred --------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH------
Confidence 012233455666666777899999999985
Q ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 208 ALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 208 ~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
.++.+.|+.+. ....|++.++|..+ ....+||+..+..|.
T Consensus 264 -~~~~~~l~~l~-~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 -GEAYDFINVAA-SGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp -THHHHHHHHHH-TTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHh-cCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 34566777764 34567899999976 578899999998764
No 125
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.51 E-value=1.4e-16 Score=149.46 Aligned_cols=77 Identities=21% Similarity=0.119 Sum_probs=65.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+++++|+++++|++++|+||||||||||+|+|+|.+ |. +|+|.++|.++......+ .+++|+..++ .+||.|+
T Consensus 21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~--~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH--QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC--CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTTH
T ss_pred HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC--CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHHH
Confidence 6899999999999999999999999999999999998 65 899999998774211111 2799998888 8999999
Q ss_pred HHH
Q 044112 129 LMY 131 (610)
Q Consensus 129 l~~ 131 (610)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 965
No 126
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.51 E-value=3.4e-15 Score=159.13 Aligned_cols=132 Identities=21% Similarity=0.354 Sum_probs=98.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.+|++++ +++|++++|+||||||||||+++|+|.+++. .+|+|.+.|.++. ...++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 3677776 7899999999999999999999999998642 1699988776653 23455678888841
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
+|++. ..+ +.+|+++|..+|+++++|||+ |+.+.
T Consensus 191 --------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 --------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp --------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred --------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 22211 234 469999999999999999999 77664
Q ss_pred HHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEee
Q 044112 209 LNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLS 248 (610)
Q Consensus 209 ~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~ 248 (610)
.. .++. + ..|.+|+.|+|+.+ +.+.+||++.|.
T Consensus 225 ~~---~l~~-~-~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 225 ET---ALRA-A-ETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HH---HHHH-H-TTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HH---HHHH-H-hcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 43 3443 3 35889999999975 578888887664
No 127
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.49 E-value=1.2e-14 Score=153.16 Aligned_cols=139 Identities=20% Similarity=0.162 Sum_probs=97.9
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC-CCCceeEEEEC-CEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP-LRRVSGSVLVN-EQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~-~~~~~G~I~~~-g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |+... ...++.+++++|+..++++.||+|
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~--~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL--TNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC--CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc--cCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHH
Confidence 35666664 4899999999999999999999999987 76 8999987 76542 234567899999999999999998
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHH
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSAS 207 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~ 207 (610)
+. +. ..+.++..+++.++++.+|+.+..+... .++| ||+||++||+++ +++.-
T Consensus 281 ~~-----l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl---------------i~~~R 333 (358)
T 2rcn_A 281 FG-----LW-HLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA---------------IAETR 333 (358)
T ss_dssp CC-----CC-CCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS---------------SCHHH
T ss_pred hh-----hc-CCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC---------------CCHHH
Confidence 41 11 2244555677888999999988887765 5899 999999999764 34444
Q ss_pred HHHHHHHHHHHH
Q 044112 208 ALNVASLLKYMA 219 (610)
Q Consensus 208 ~~~i~~~L~~la 219 (610)
.....+++++++
T Consensus 334 ~~~y~~l~~e~~ 345 (358)
T 2rcn_A 334 FENYHRILESMA 345 (358)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 445556666654
No 128
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.47 E-value=2.1e-15 Score=157.79 Aligned_cols=144 Identities=11% Similarity=0.068 Sum_probs=101.7
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-------hcccc--eEEEEccCCCCCCCCCHHHHH
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-------TQFRR--ISGYVTQDEVLFPLLTVKETL 129 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-------~~~~~--~~~yv~Q~~~l~~~lTv~E~l 129 (610)
++|++++|+||||||||||++.|+|++++. +|+|.++|.++.. ..+++ .+.+++|+..+.|.+||+||+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 689999999999999999999999998876 8999999998742 11222 356999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Q 044112 130 MYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASAL 209 (610)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~ 209 (610)
.++...... . .+++..|+.+..+... ..|| .+++++..++.+++||.+|. .
T Consensus 205 ~~~~~~~~d--------~--vliDtaG~~~~~~~l~-----~eL~-------~i~ral~~de~llvLDa~t~-------~ 255 (328)
T 3e70_C 205 QHAKARGID--------V--VLIDTAGRSETNRNLM-----DEMK-------KIARVTKPNLVIFVGDALAG-------N 255 (328)
T ss_dssp HHHHHHTCS--------E--EEEEECCSCCTTTCHH-----HHHH-------HHHHHHCCSEEEEEEEGGGT-------T
T ss_pred HHHHhccch--------h--hHHhhccchhHHHHHH-----HHHH-------HHHHHhcCCCCEEEEecHHH-------H
Confidence 876432100 0 0122233332222221 2333 38888887777888885543 4
Q ss_pred HHHHHHHHHHHhCCcEEEEEecCC
Q 044112 210 NVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 210 ~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
++++.++.+.++.+.|+|++||..
T Consensus 256 ~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 666677777666789999999954
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=1.3e-15 Score=165.83 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=106.3
Q ss_pred cceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-------hc--ccceEEEEccCCCCCCC
Q 044112 52 KNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-------TQ--FRRISGYVTQDEVLFPL 122 (610)
Q Consensus 52 ~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-------~~--~~~~~~yv~Q~~~l~~~ 122 (610)
+++|+++++|++++|+||||||||||+++|+|++++. +|+|.++|.+... .. .++.++|++|+..+++.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 6899999999999999999999999999999998765 8999998776532 11 24568999999888888
Q ss_pred CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH-hCCC-EEEEeCCC
Q 044112 123 LTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV-HDPA-VLLIDEPT 200 (610)
Q Consensus 123 lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~-~~p~-llllDEPt 200 (610)
+||++++.++..-... .+ +++..|..+... .+-.--+|++.+++++. ..|. ++|..+||
T Consensus 362 ~tV~e~l~~a~~~~~D--------vV--LIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 362 SVIFDAIQAAKARNID--------VL--IADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHHTTCS--------EE--EECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHHHhcCCC--------EE--EEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 9999999987532100 00 122222221111 11122347788888663 4574 66666688
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCcEEEEEec
Q 044112 201 SGLDSASALNVASLLKYMAVKQGKTIVLTIH 231 (610)
Q Consensus 201 sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H 231 (610)
+|.|.. +.++.+.+..|.|.++.||
T Consensus 423 tGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred ccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 886554 3344454456889999999
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.46 E-value=2.7e-17 Score=173.05 Aligned_cols=161 Identities=17% Similarity=0.168 Sum_probs=109.1
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChh-------cccceEEEEccCCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNIT-------QFRRISGYVTQDEVLFP 121 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~-------~~~~~~~yv~Q~~~l~~ 121 (610)
.+|+++|+++++|++++|+||||||||||+|+|+|++.+. +|+|.+.|.+.... ..++.+++++|++.+++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~--~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA--GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC--CCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 6899999999999999999999999999999999998765 89999999876321 24567899999988775
Q ss_pred CC------------CHHHHHHHHHH-----------------------------hcCCCCHHHHH---HHHHHHHHHcCC
Q 044112 122 LL------------TVKETLMYSAR-----------------------------LRLHVGLNRAK---ARVSELLKELGL 157 (610)
Q Consensus 122 ~l------------Tv~E~l~~~~~-----------------------------~~~~~~~~~~~---~~v~~~l~~lgL 157 (610)
.. +++|.+...-. +..+...++.+ +.+.+....+.+
T Consensus 121 ~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivvl 200 (337)
T 2qm8_A 121 RPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAV 200 (337)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEE
T ss_pred ccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEEE
Confidence 32 23333311100 00000000000 001111111111
Q ss_pred cccccccccCCCCCccCHHHhhHHHHHHHHHh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 044112 158 EHVANVRIGGESSRGISGGEKRRVSIGVDLVH------DPAVLLIDEPTSGLDSASALNVASLLKYMAV 220 (610)
Q Consensus 158 ~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~------~p~llllDEPtsgLD~~~~~~i~~~L~~la~ 220 (610)
+..|.. ....+|+|++|++..+++++. +|++++ ||++|.....++.+.|.++..
T Consensus 201 -NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 201 -NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred -Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 122210 124689999999999999887 688887 999999999999999988653
No 131
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.43 E-value=8.4e-16 Score=146.05 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=90.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEEECCEeCC------hhccc-ceEE----EEccCCCCCCCCCHHHHH
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVLVNEQPMN------ITQFR-RISG----YVTQDEVLFPLLTVKETL 129 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~~~g~~~~------~~~~~-~~~~----yv~Q~~~l~~~lTv~E~l 129 (610)
++++|+|+||||||||++.|+|++++. -..|.|.++|.++. ...+| +.+| +++|+..++ ++|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 589999999999999999999998753 12699999998742 12344 3466 889987655 111
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH-cCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEE-------EEeCCCC
Q 044112 130 MYSARLRLHVGLNRAKARVSELLKE-LGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVL-------LIDEPTS 201 (610)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~ll-------llDEPts 201 (610)
. . ++....++++++. +. -.|+.++ .+||||||||++|||+++.+|++. .-|.|..
T Consensus 77 --------~-~-~~~~a~l~~~i~~~l~---g~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~ 139 (171)
T 2f1r_A 77 --------V-S-EEEGNDLDWIYERYLS---DYDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVD 139 (171)
T ss_dssp --------C-C-HHHHTCHHHHHHHHTT---TCSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCS
T ss_pred --------C-C-hhhhhCHHHHHHhhCC---CCCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcc
Confidence 0 0 1111234556665 43 3577786 469999999999999999999873 2355532
Q ss_pred C---CCHHHHHHHHHHHHHHHHhCC
Q 044112 202 G---LDSASALNVASLLKYMAVKQG 223 (610)
Q Consensus 202 g---LD~~~~~~i~~~L~~la~~~g 223 (610)
+ +|......+.+.+.+..++.|
T Consensus 140 ~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 140 GHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp SSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cCcccCcccHHHHHHHHHHHHhccC
Confidence 2 344556778888876666544
No 132
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.43 E-value=3.7e-13 Score=143.34 Aligned_cols=77 Identities=23% Similarity=0.412 Sum_probs=67.8
Q ss_pred CCCccCHHHhhHH------HHHHHHHhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhc
Q 044112 169 SSRGISGGEKRRV------SIGVDLVHD-PAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELF 241 (610)
Q Consensus 169 ~~~~LSgGerqRv------~ia~aL~~~-p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~ 241 (610)
.+..||||||||+ ++|++|+.+ |++++|||||+|||+..+..+.+.|+++. + +.+||++||++. +...+
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~-~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-S-IPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-S-CSEEEEEESCGG--GGGGC
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-c-CCeEEEEEChHH--HHhhC
Confidence 3468999999988 567888999 99999999999999999999999999874 3 469999999985 57899
Q ss_pred ceEEEeeC
Q 044112 242 DQILLLSK 249 (610)
Q Consensus 242 D~v~~L~~ 249 (610)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999983
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.42 E-value=9.3e-15 Score=151.38 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=84.8
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE---CCEeCChh--ccc-ceEEEEccCCCCC-----CCCCHH
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV---NEQPMNIT--QFR-RISGYVTQDEVLF-----PLLTVK 126 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~---~g~~~~~~--~~~-~~~~yv~Q~~~l~-----~~lTv~ 126 (610)
+.+|++++|+||||||||||+|+|+ ..++. +|+|.+ +|++.+.. ..+ +.+||++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~--~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR--TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC--CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc--ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 3469999999999999999999999 88776 899999 99887532 222 3589999998653 78999
Q ss_pred HHH--HHH------HHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCccCHHHhhHHHHHHH
Q 044112 127 ETL--MYS------ARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESSRGISGGEKRRVSIGVD 186 (610)
Q Consensus 127 E~l--~~~------~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSgGerqRv~ia~a 186 (610)
|++ .|+ .+.+.....++...+++++++.++|.+ ..+.+. +.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 888 453 122211122233467899999999986 666665 5899999999999873
No 134
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.40 E-value=4e-14 Score=134.69 Aligned_cols=113 Identities=21% Similarity=0.267 Sum_probs=76.7
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR 134 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~ 134 (610)
++.+++|+.++|.||||+|||||+++|++...+. +|. . +.| +++.|.+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--~g~------~---------~~~----------~~~~~~~~~~~- 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK--KGI------R---------GYF----------FDTKDLIFRLK- 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH--SCC------C---------CCE----------EEHHHHHHHHH-
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH--cCC------e---------EEE----------EEHHHHHHHHH-
Confidence 4567789999999999999999999999987432 331 0 111 23333222110
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 044112 135 LRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS-GLDSASALNVAS 213 (610)
Q Consensus 135 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~ 213 (610)
..... ++.+ -....+.+|++|++|||++ ++|+..+..+.+
T Consensus 84 ---------------~~~~~---------------------~~~~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ 124 (180)
T 3ec2_A 84 ---------------HLMDE---------------------GKDT---KFLKTVLNSPVLVLDDLGSERLSDWQRELISY 124 (180)
T ss_dssp ---------------HHHHH---------------------TCCS---HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHH
T ss_pred ---------------HHhcC---------------------chHH---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHH
Confidence 01110 0000 1223355999999999995 999999999999
Q ss_pred HHHHHHHhCCcEEEEEecCCcH
Q 044112 214 LLKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 214 ~L~~la~~~g~tvi~~~H~~~~ 235 (610)
++++..+ .|+++|++||.+..
T Consensus 125 ll~~~~~-~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 125 IITYRYN-NLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHH-TTCEEEEECCCCSC
T ss_pred HHHHHHH-cCCCEEEEcCCChh
Confidence 9988754 58999999998764
No 135
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.38 E-value=6.9e-15 Score=158.47 Aligned_cols=169 Identities=18% Similarity=0.183 Sum_probs=99.6
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLM 130 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~ 130 (610)
-++++++++.|+.++|+|+|||||||||++|+|..+ .+.+.+.+ .....++++.+++. ..+++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEeccc
Confidence 379999999999999999999999999999999842 12333321 12233455554430 0011111100
Q ss_pred HH--HHhcCCCCHHH--HHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 044112 131 YS--ARLRLHVGLNR--AKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSA 206 (610)
Q Consensus 131 ~~--~~~~~~~~~~~--~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 206 (610)
+. +.......... ..++++.++..+++. +.. ...+|+|++||+.+|++|+.+|.++++ +++|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00 00000001110 011222233334443 222 358999999999999999999999999 999998
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 207 SALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 207 ~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
.+ ..++.+++..++.|.+++.+|..-...+.++++.+
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 77 55555555544557666655543333466666544
No 136
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.38 E-value=1.8e-13 Score=146.86 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=91.2
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHH--HCCCCCC---CceeEEEECCEeC-Chhc---ccceEEEEccCCCCCCCCCH
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDIL--AGMIPLR---RVSGSVLVNEQPM-NITQ---FRRISGYVTQDEVLFPLLTV 125 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L--~g~~~~~---~~~G~I~~~g~~~-~~~~---~~~~~~yv~Q~~~l~~~lTv 125 (610)
.+-+++|++++|+||||||||||++.| ++..++. ...+.++++++.. .... +.+.+++.+|
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~---------- 241 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD---------- 241 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH----------
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH----------
Confidence 367999999999999999999999954 5666542 1134666666532 1100 0111111111
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCH-HHhhHHHHHHHHH--hCCCEEEEeCCCCC
Q 044112 126 KETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISG-GEKRRVSIGVDLV--HDPAVLLIDEPTSG 202 (610)
Q Consensus 126 ~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSg-GerqRv~ia~aL~--~~p~llllDEPtsg 202 (610)
.+++.+ .+. +..++ .+.+.+.-+.+++ .+|+++++|||++.
T Consensus 242 ------------------------~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 242 ------------------------DALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp ------------------------HHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred ------------------------hHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 111111 110 11222 1223333333333 46999999999999
Q ss_pred CCHHHH------------HHHHHHHHHHHHhCCcEEEEEecCCc------------------HHHHHhcceEEEeeCCe
Q 044112 203 LDSASA------------LNVASLLKYMAVKQGKTIVLTIHQPG------------------FRILELFDQILLLSKGT 251 (610)
Q Consensus 203 LD~~~~------------~~i~~~L~~la~~~g~tvi~~~H~~~------------------~~i~~~~D~v~~L~~G~ 251 (610)
+|+... .++++.|++++++.|.|||+++|... ..+...+|.++.|++++
T Consensus 286 ~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 286 YRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp CC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 997543 67889999999888999999999821 12466789999998764
No 137
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.37 E-value=2.2e-13 Score=126.35 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=70.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee--EEEECCEeCChhcccceEEEEccCCCCCCCCCHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG--SVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G--~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| .+++++.++. ..
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~-----------------~~----- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMP-----------------LT----- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSC-----------------CC-----
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhh-----------------HH-----
Confidence 466776 8999999999999999999999998754 35 3433332211 00
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHH
Q 044112 127 ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSA 206 (610)
Q Consensus 127 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~ 206 (610)
+++.+|++|++|||++ +|..
T Consensus 79 -----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~ 98 (149)
T 2kjq_A 79 -----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNE 98 (149)
T ss_dssp -----------------------------------------------------------GGGGGCSEEEEESTTC-CCSH
T ss_pred -----------------------------------------------------------HHHhCCCEEEEeCccc-cChH
Confidence 1245799999999998 6655
Q ss_pred HHHHHHHHHHHHHHhCCcE-EEEEecCCc
Q 044112 207 SALNVASLLKYMAVKQGKT-IVLTIHQPG 234 (610)
Q Consensus 207 ~~~~i~~~L~~la~~~g~t-vi~~~H~~~ 234 (610)
.+..+.++++++.+ .|++ +|+++|.+.
T Consensus 99 ~~~~l~~li~~~~~-~g~~~iiits~~~p 126 (149)
T 2kjq_A 99 EQALLFSIFNRFRN-SGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHHHHH-HTCCEEEEEESSCT
T ss_pred HHHHHHHHHHHHHH-cCCcEEEEECCCCH
Confidence 58899999998865 4777 888998643
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.35 E-value=4.1e-14 Score=145.63 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=88.9
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH----
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR---- 134 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~---- 134 (610)
+++.+++|.||||||||||.+.|++.+.+ .| .. ++.+.+|+||+.+++. ++++|+.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g-----------~~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY-----------GG-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH-----------GG-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC-----------CC-CceEEEeccccccCCh-HHHHHHhccccccch
Confidence 57899999999999999999999998754 22 01 3456677999998875 88999987631
Q ss_pred hcC-CCCHHHHHHHHHHHHHHcCCc--cc--ccccccCCCCCccCHHHhhHHHHH--HHHHhCCCEEEEeCCCCCCCHHH
Q 044112 135 LRL-HVGLNRAKARVSELLKELGLE--HV--ANVRIGGESSRGISGGEKRRVSIG--VDLVHDPAVLLIDEPTSGLDSAS 207 (610)
Q Consensus 135 ~~~-~~~~~~~~~~v~~~l~~lgL~--~~--~~~~vg~~~~~~LSgGerqRv~ia--~aL~~~p~llllDEPtsgLD~~~ 207 (610)
+.. +.+.....+...+.++.+.-. .. ....+ ..+...+||||+||+.+| +++ +|+|+|+|||++++|+..
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 110 111111234455666666432 00 11111 123478999999999987 555 999999999999999853
No 139
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.35 E-value=9.2e-16 Score=165.50 Aligned_cols=133 Identities=23% Similarity=0.232 Sum_probs=94.5
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-------hcccceEEEEc-------
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-------TQFRRISGYVT------- 114 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-------~~~~~~~~yv~------- 114 (610)
.+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++.. ...++.+++.+
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~ 232 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI 232 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccchhccCCcceEEEccccCcCHHHHHHHH
Confidence 478887 4 3899999999999999999999999998775 8999999887631 12334455655
Q ss_pred --cCCCC--CCC----CCHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHH
Q 044112 115 --QDEVL--FPL----LTVKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSI 183 (610)
Q Consensus 115 --Q~~~l--~~~----lTv~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~i 183 (610)
|++.. ++. .|+++++.++..-+.. .......+.+ +.|..+|+.+.. .. ..|||||+|| |
T Consensus 233 Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~~-----~~LSgg~~QR--L 302 (418)
T 1p9r_A 233 LRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--IS-----SSLLGVLAQR--L 302 (418)
T ss_dssp GGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--HH-----HHEEEEEEEE--E
T ss_pred hccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--HH-----HHHHHHHHHH--h
Confidence 88754 344 6899998876421110 0001112223 356778887653 22 5899999999 9
Q ss_pred HHHHHhCCCEEE
Q 044112 184 GVDLVHDPAVLL 195 (610)
Q Consensus 184 a~aL~~~p~lll 195 (610)
|++|+.+|++..
T Consensus 303 araL~~~p~~~~ 314 (418)
T 1p9r_A 303 VRTLCPDCKEPY 314 (418)
T ss_dssp EEEECTTTCEEE
T ss_pred hhhhcCCCCccC
Confidence 999999999876
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.33 E-value=1.4e-15 Score=168.16 Aligned_cols=175 Identities=12% Similarity=0.142 Sum_probs=110.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe-CChhcccceEEEEccCCC---------
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP-MNITQFRRISGYVTQDEV--------- 118 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~-~~~~~~~~~~~yv~Q~~~--------- 118 (610)
.+++++++.+++|+.++|+|||||||||||++|+|+++++ +|.|.++|.+ +... -.+.++++.|...
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~--~giitied~~E~~~~-~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD--AKVVSIEDTREIKLY-HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCCCC-CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC--CCEEEEcCcccccCC-CCCeEEEEeecccccCCcCHHH
Confidence 5789999999999999999999999999999999999876 8999999865 2211 1334555555433
Q ss_pred -------------CCCCCCHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHcCC-----cc----cccccccCCCCCccC
Q 044112 119 -------------LFPLLTVKETLMYSARLRLHVGL--NRAKARVSELLKELGL-----EH----VANVRIGGESSRGIS 174 (610)
Q Consensus 119 -------------l~~~lTv~E~l~~~~~~~~~~~~--~~~~~~v~~~l~~lgL-----~~----~~~~~vg~~~~~~LS 174 (610)
+++.++..|++.+......+... ......+.++++++.. .. ..+..+ .....+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEEe
Confidence 22345555555443322211000 0000112333343332 11 111100 1124689
Q ss_pred HHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEE--EecCCcHHHHHhcc
Q 044112 175 GGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVL--TIHQPGFRILELFD 242 (610)
Q Consensus 175 gGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~--~~H~~~~~i~~~~D 242 (610)
||||||..++. + | |+|||+.....+++.|.++.+ .|+|+++ ++|+++ ++.+.++
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHHH-HHHHHcC
Confidence 99999977652 1 7 999999888777777777753 4788875 899987 4666654
No 141
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.2e-12 Score=137.40 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=76.5
Q ss_pred EEEECCCCCcHHHHHHHHHC-CCCCCCceeEEEECCEeCCh-hcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCH
Q 044112 64 MAIVGPSGAGKTTLLDILAG-MIPLRRVSGSVLVNEQPMNI-TQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGL 141 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g-~~~~~~~~G~I~~~g~~~~~-~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~ 141 (610)
+.|.||||+|||||+++|++ +..++ .|++.++|.+... ...+..+++++|.+.+.-..+ + .. ....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~--~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~-~~~~ 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG--VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------MG-NNDR 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT--CCC------------------CCEECSSEEEECCC--------------CCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC--CCeEEecceeecccccccceeeeecccceEEecHh--h-------cC-Ccch
Confidence 89999999999999999999 66665 8999999987642 222456788888765421111 0 00 0011
Q ss_pred HHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 044112 142 NRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVK 221 (610)
Q Consensus 142 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~ 221 (610)
..+.+.++.+......+... .+|| +..+|+++++|||++ ||+.++..+.+.|++..
T Consensus 107 ----~~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-- 162 (354)
T 1sxj_E 107 ----IVIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-- 162 (354)
T ss_dssp ----HHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--
T ss_pred ----HHHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--
Confidence 12333333332111111111 3566 788999999999999 99999999999999864
Q ss_pred CCcEEEEEecCCcH
Q 044112 222 QGKTIVLTIHQPGF 235 (610)
Q Consensus 222 ~g~tvi~~~H~~~~ 235 (610)
.+.++|+++|+++.
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 36899999999864
No 142
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=2.2e-14 Score=150.58 Aligned_cols=165 Identities=21% Similarity=0.194 Sum_probs=109.4
Q ss_pred ccccceeEEEeCc-------eEEEEECCCCCcHHHHHHHHHCCCCCC--CceeEEEECCEeCCh--hc-ccceEEEEccC
Q 044112 49 CILKNVNCEARPG-------EIMAIVGPSGAGKTTLLDILAGMIPLR--RVSGSVLVNEQPMNI--TQ-FRRISGYVTQD 116 (610)
Q Consensus 49 ~iL~~vs~~i~~G-------e~~ailG~nGaGKSTLL~~L~g~~~~~--~~~G~I~~~g~~~~~--~~-~~~~~~yv~Q~ 116 (610)
.+++++++.+++| +.++|.||||+|||||+++|+|.+... +.+|.+..++.++.. .. .++.+.++.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 6899999999887 899999999999999999999986321 236766665554321 11 24579999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcC-CC--CHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCE
Q 044112 117 EVLFPLLTVKETLMYSARLRL-HV--GLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAV 193 (610)
Q Consensus 117 ~~l~~~lTv~E~l~~~~~~~~-~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~l 193 (610)
+.+.+ ++.|++........ .. ......+.++..++.++|.. +++.. ..||+|+|||+.++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~-----~~Ls~~l~sR~~l~--------- 174 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRS-----GLLSSPLRSRFGII--------- 174 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCG-----GGSCHHHHTTCSEE---------
T ss_pred hhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCc-----ccCCHHHHHhcCce---------
Confidence 87765 78888865433211 00 01222344555566666654 55554 48999999998655
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 194 LLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 194 lllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
.+||+.+..++.++|++.++..+ +.|+++ .+..++++
T Consensus 175 -------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 -------LELDFYTVKELKEIIKRAASLMD-----VEIEDA-AAEMIAKR 211 (334)
T ss_dssp -------EECCCCCHHHHHHHHHHHHHHTT-----CCBCHH-HHHHHHHT
T ss_pred -------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCHH-HHHHHHHh
Confidence 78888899999999999876655 357664 35555554
No 143
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.25 E-value=4e-15 Score=158.95 Aligned_cols=171 Identities=13% Similarity=0.125 Sum_probs=120.1
Q ss_pred EEeCceEEEEECCCCCcHHHHHHHHHCCCC----------CCCceeEEEECCEeCCh----hcccce---EEEEccCCCC
Q 044112 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIP----------LRRVSGSVLVNEQPMNI----TQFRRI---SGYVTQDEVL 119 (610)
Q Consensus 57 ~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~----------~~~~~G~I~~~g~~~~~----~~~~~~---~~yv~Q~~~l 119 (610)
.+++|+.++|+|+||||||||+|+|+|... ..+.+|.|.++|..++. ..-++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999321 11458999999854321 011222 3577888888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCC--CEEE
Q 044112 120 FPLLTVKETL--MYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDP--AVLL 195 (610)
Q Consensus 120 ~~~lTv~E~l--~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p--~lll 195 (610)
.+..+..|++ .|...++. ++.++..++..+ +. ....+||+. +| ++++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~----------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA----------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT----------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH----------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhhhh
Confidence 8888877766 44433321 111111111111 11 223466653 89 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHH-HHhCCcEEEEEecCCcHHHHHhcceEE-EeeCC-eEEEEcChhH
Q 044112 196 IDEPTSGLDSASALNVASLLKYM-AVKQGKTIVLTIHQPGFRILELFDQIL-LLSKG-TVVHHGSLDL 260 (610)
Q Consensus 196 lDEPtsgLD~~~~~~i~~~L~~l-a~~~g~tvi~~~H~~~~~i~~~~D~v~-~L~~G-~iv~~g~~~~ 260 (610)
+|||+.++|+....+.++.+++. ++ .|.||+ +|+.. ++.++||++. +|.+| ++++.|+.++
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 99999999999999999999987 54 577764 99987 5899999999 99999 8887776543
No 144
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.22 E-value=3.5e-14 Score=138.64 Aligned_cols=164 Identities=18% Similarity=0.095 Sum_probs=89.7
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRL 137 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~ 137 (610)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..+.. +..+++....+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~---g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ---G---------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT---T---------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---C---------------CceEEEecCCCcCCH-HHHHHhcccccCCC
Confidence 5789999999999999999999999998642 2 123444444433321 11111100000000
Q ss_pred CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHH-HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 044112 138 HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIG-VDLVHDPAVLLIDEPTSGLDSASALNVASLLK 216 (610)
Q Consensus 138 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia-~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~ 216 (610)
+ .........+.+..+...+..+.++. +....+|+||+||++++ ++++.++.++++|||.- ..+.
T Consensus 80 ~--~~~~~~~~~~~l~~l~~~~~i~~p~~-d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~ 145 (208)
T 3c8u_A 80 P--ETFDFEGFQRLCHALKHQERVIYPLF-DRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLT 145 (208)
T ss_dssp G--GGBCHHHHHHHHHHHHHCSCEEEEEE-ETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGG
T ss_pred C--chhhHHHHHHHHHHHhcCCceecccC-CccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHH
Confidence 0 00011122233333322222222222 22346899999999998 77888888888888731 1111
Q ss_pred HHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeEEEEcChhHHHHHH
Q 044112 217 YMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTVVHHGSLDLLEHRL 265 (610)
Q Consensus 217 ~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~iv~~g~~~~~~~~~ 265 (610)
.. --.+|.+.++.+..+.+...|. +..|. +.+++.+..
T Consensus 146 ---~~-~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 146 ---AI-WDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp ---GT-CSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred ---Hh-cCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 12 2367777777665566677662 34454 455555443
No 145
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.22 E-value=5.2e-12 Score=137.99 Aligned_cols=181 Identities=13% Similarity=0.084 Sum_probs=116.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee-EEEECCEeCChhcccce-EEEEccCCCCCCCCCHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG-SVLVNEQPMNITQFRRI-SGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G-~I~~~g~~~~~~~~~~~-~~yv~Q~~~l~~~lTv~ 126 (610)
..|+++.+-+++|+++.|.|+||+|||||+..+++...+. .| .|.+.+.+.+..++.++ .+.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 4788898889999999999999999999999999865331 23 44444433332221111 000000 000
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH--hCCCEEEEeCCCCCCC
Q 044112 127 ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV--HDPAVLLIDEPTSGLD 204 (610)
Q Consensus 127 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~llllDEPtsgLD 204 (610)
+.+ +.+.-..+..+++.+.++.++..+..-.. ..++|.+|.+ +.++.++ .+|+++++|+++...+
T Consensus 261 ~~l------~~g~l~~~~~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 261 QNL------RTGKLTPEDWGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHH------HTSCCCHHHHHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHH------hcCCCCHHHHHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhcc
Confidence 011 11111122334556666666543322111 2479999987 5667776 6899999999998774
Q ss_pred --------HHHHHHHHHHHHHHHHhCCcEEEEEec---------C--Cc-------HHHHHhcceEEEeeCCeE
Q 044112 205 --------SASALNVASLLKYMAVKQGKTIVLTIH---------Q--PG-------FRILELFDQILLLSKGTV 252 (610)
Q Consensus 205 --------~~~~~~i~~~L~~la~~~g~tvi~~~H---------~--~~-------~~i~~~~D~v~~L~~G~i 252 (610)
.....++.+.|+++|++.|++||+++| + |. ..+.+.+|.|++|.+++.
T Consensus 328 ~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 328 SGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 334478888999999888999999999 2 43 136788999999987764
No 146
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.19 E-value=5.8e-15 Score=143.38 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=84.0
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCC-----------CceeEEEECCEeC---ChhcccceEEEEccCCCCCCCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLR-----------RVSGSVLVNEQPM---NITQFRRISGYVTQDEVLFPLLT 124 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~-----------~~~G~I~~~g~~~---~~~~~~~~~~yv~Q~~~l~~~lT 124 (610)
++|++++|+||||||||||+++|+|+++.. +..|+ ++|.++ +...+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 589999999999999999999999986410 12454 355432 222333322 3333221 123
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHh----hHHHHHH-HHHhCCCEEEEeCC
Q 044112 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEK----RRVSIGV-DLVHDPAVLLIDEP 199 (610)
Q Consensus 125 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGer----qRv~ia~-aL~~~p~llllDEP 199 (610)
+.+|+ ++ .+ ++.++++++.-. ....+.. + .|-+ +++ .++ +++.+|++++||||
T Consensus 76 ~~~n~-~g------~~----~~~i~~~~~~~~-~~~~~~~--------~-~g~~~~~~~~~-~~~~~~l~~p~~~ilde~ 133 (198)
T 1lvg_A 76 FSGNL-YG------TS----KEAVRAVQAMNR-ICVLDVD--------L-QGVRSIKKTDL-CPIYIFVQPPSLDVLEQR 133 (198)
T ss_dssp ETTEE-EE------EE----HHHHHHHHHTTC-EEEEECC--------H-HHHHHHTTSSC-CCEEEEEECSCHHHHHHH
T ss_pred ecCcc-CC------CC----HHHHHHHHHcCC-cEEEECC--------H-HHHHHHHhcCC-CcEEEEEeCCCHHHHHHH
Confidence 33332 11 11 122344443211 0011100 0 0111 112 445 67778888889999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeC
Q 044112 200 TSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSK 249 (610)
Q Consensus 200 tsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~ 249 (610)
|+++|..+...+.+.|.+..++ +...|.+ ..+|+++++++
T Consensus 134 ~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 134 LRLRNTETEESLAKRLAAARTD-----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHH-----TTGGGST-----TTCSEEEECSS
T ss_pred HHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc-----CCceEEEECCC
Confidence 9999999999999999887543 1234521 56899888764
No 147
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.19 E-value=5.7e-13 Score=137.82 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=72.4
Q ss_pred EEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE---CCEeCChh--ccc-ceEEEEccCCC------------
Q 044112 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV---NEQPMNIT--QFR-RISGYVTQDEV------------ 118 (610)
Q Consensus 57 ~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~---~g~~~~~~--~~~-~~~~yv~Q~~~------------ 118 (610)
++.+|++++|+||||||||||||+|+|+.+++ +|+|.+ +|++++.. ..+ +.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~--~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLR--VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC---------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhccccccc--ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 34579999999999999999999999999876 999999 89887531 121 35899999974
Q ss_pred ----CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCccCH
Q 044112 119 ----LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLE-HVANVRIGGESSRGISG 175 (610)
Q Consensus 119 ----l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSg 175 (610)
++|.+|+ ||+.|+. +.. ..+...++.++|+.+||. +..+.+. +.||+
T Consensus 243 ~~~~l~~~~~~-~n~~~~~-~~~---~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~lse 294 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFSD-CNH---VDEPECGVKEAVENGEIAESRYENYV-----KMFYE 294 (301)
T ss_dssp HHGGGSTTSSS-CCCSSTT-CCS---SSCSSCHHHHHHHHTSSCHHHHHHHH-----HHHHH
T ss_pred HHHHHHHhccc-ccCcCCC-CcC---CCCCCcHHHHHHHcCCCCHHHHHHHH-----HHHHH
Confidence 5889999 9998753 211 122346789999999995 6666554 46764
No 148
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.18 E-value=7.7e-13 Score=136.85 Aligned_cols=117 Identities=17% Similarity=0.223 Sum_probs=69.4
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE---CCEeCCh-hcccc-eEEEEccCCCCCC----CCCHH
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV---NEQPMNI-TQFRR-ISGYVTQDEVLFP----LLTVK 126 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~---~g~~~~~-~~~~~-~~~yv~Q~~~l~~----~lTv~ 126 (610)
+++.+|++++|+||||+|||||+|+|+|..++. +|+|.+ +|+..+. ....+ ..+|++|++.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~--~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR--TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc--ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 556789999999999999999999999998876 899999 8877643 22222 2799999987665 6899
Q ss_pred HHHH--HHH-H-----hcCC--CCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhH
Q 044112 127 ETLM--YSA-R-----LRLH--VGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRR 180 (610)
Q Consensus 127 E~l~--~~~-~-----~~~~--~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqR 180 (610)
|++. |.. . ++.. ...++...+++++++.++|.+.+.... ..++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 8883 331 0 1111 111223457899999999987443332 3677787763
No 149
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.17 E-value=1.9e-12 Score=128.54 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=48.6
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH-------HHHhcceEEEeeC
Q 044112 189 HDPAVLLIDEPTSGL--DSASALNVASLLKYMAVKQGKTIVLTIHQPGFR-------ILELFDQILLLSK 249 (610)
Q Consensus 189 ~~p~llllDEPtsgL--D~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~-------i~~~~D~v~~L~~ 249 (610)
.+|+++++|||++.+ |+....+.+..|.+++++.|+|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 665667777778777777899999999987631 4678899999974
No 150
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.15 E-value=2.5e-14 Score=146.16 Aligned_cols=141 Identities=18% Similarity=0.178 Sum_probs=97.7
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCC-CCCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDE-VLFPLLT 124 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~-~l~~~lT 124 (610)
.+++++++.+++| ++|.||||+|||||+++|+|...+ |.|.++|.++.. .+..+.+++++|+. ...|.++
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 6899999999999 999999999999999999998653 789999987632 22344567778764 4556667
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC---
Q 044112 125 VKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS--- 201 (610)
Q Consensus 125 v~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts--- 201 (610)
+.|++......+ .. ...+ .+.+..++.+ ..|||||+||+.|++++..+|++| |||+.
T Consensus 108 ~~Deid~~~~~r-----~~--~~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~g 167 (274)
T 2x8a_A 108 FFDEVDALCPRR-----SD--RETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAILRPG 167 (274)
T ss_dssp EEETCTTTCC----------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTT
T ss_pred eeehhhhhhccc-----CC--Ccch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhcCcc
Confidence 777665432111 00 0000 1223334333 589999999999999999999986 99864
Q ss_pred ---------CCCHHHHHHHHHHH
Q 044112 202 ---------GLDSASALNVASLL 215 (610)
Q Consensus 202 ---------gLD~~~~~~i~~~L 215 (610)
-.|...+.++++.+
T Consensus 168 Rfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 168 RLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHHHH
Confidence 22565666555543
No 151
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.14 E-value=8.6e-13 Score=136.92 Aligned_cols=127 Identities=13% Similarity=0.120 Sum_probs=89.5
Q ss_pred ccccceeEEE-------------------eCceEEEEECCCCCcHHHHHHHHHCCCC--CCCceeEEEE---CCEeCChh
Q 044112 49 CILKNVNCEA-------------------RPGEIMAIVGPSGAGKTTLLDILAGMIP--LRRVSGSVLV---NEQPMNIT 104 (610)
Q Consensus 49 ~iL~~vs~~i-------------------~~Ge~~ailG~nGaGKSTLL~~L~g~~~--~~~~~G~I~~---~g~~~~~~ 104 (610)
++++++++.+ ++|+++||+||||||||||+++|+|++. |+ +|+|.+ +|......
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~--~G~i~vi~~d~~~~~~~ 126 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE--HRRVELITTDGFLHPNQ 126 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT--CCCEEEEEGGGGBCCHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC--CCeEEEEecCCccCcHH
Confidence 5788999887 8999999999999999999999999876 65 899999 88775432
Q ss_pred cccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHH
Q 044112 105 QFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIG 184 (610)
Q Consensus 105 ~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia 184 (610)
.++.++++ |+..+++.+|+.+++.+...++.... .+ ..-.+ ..+.+ +|+..+
T Consensus 127 -~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~---------------~i---~~P~~------~~~~~--~~~~~~ 178 (308)
T 1sq5_A 127 -VLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVP---------------NV---TAPVY------SHLIY--DVIPDG 178 (308)
T ss_dssp -HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCS---------------CE---EECCE------ETTTT--EECTTC
T ss_pred -HHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCC---------------ce---ecccc------ccccc--Cccccc
Confidence 34557888 87778888999999998766542110 00 00000 11111 222222
Q ss_pred HHHHhCCCEEEEeCCCCCCCH
Q 044112 185 VDLVHDPAVLLIDEPTSGLDS 205 (610)
Q Consensus 185 ~aL~~~p~llllDEPtsgLD~ 205 (610)
.+.+.+|+++++|.|....|.
T Consensus 179 ~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 179 DKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CEEEC-CCEEEEECTTTTCCG
T ss_pred ceecCCCCEEEECchhhCCCc
Confidence 234467899999999988874
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.06 E-value=8.1e-11 Score=121.84 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=82.1
Q ss_pred eeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHH
Q 044112 54 VNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSA 133 (610)
Q Consensus 54 vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~ 133 (610)
+++..++|++++|+|||||||||+++.|++.+.+. .|+|.+.+.+..... ..|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~-------------------a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAA-------------------AIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHH-------------------HHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHH-------------------HHH------
Confidence 45567899999999999999999999999998754 678888766531100 011
Q ss_pred HhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHH---HHHHHHHhCCCEEEEeCCCCCCCHHHHHH
Q 044112 134 RLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRV---SIGVDLVHDPAVLLIDEPTSGLDSASALN 210 (610)
Q Consensus 134 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv---~ia~aL~~~p~llllDEPtsgLD~~~~~~ 210 (610)
....+.+.+|+... ...|||+.+++ ++++++..+|+++++|||.. ......
T Consensus 150 -------------qL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 150 -------------QLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp -------------HHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred -------------HHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 12234455566431 25689999999 89999999999999999974 345556
Q ss_pred HHHHHHHHH
Q 044112 211 VASLLKYMA 219 (610)
Q Consensus 211 i~~~L~~la 219 (610)
+++.|+++.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 153
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.01 E-value=5.6e-14 Score=139.34 Aligned_cols=38 Identities=26% Similarity=0.254 Sum_probs=23.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHH-CCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILA-GMIP 86 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~-g~~~ 86 (610)
+..+++|+++++|++++|+||||||||||+++|+ |+.+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999 9974
No 154
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.01 E-value=5.1e-10 Score=118.00 Aligned_cols=155 Identities=20% Similarity=0.279 Sum_probs=90.2
Q ss_pred ccccee--EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 50 ILKNVN--CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 50 iL~~vs--~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
-|+.+- +-+++|+++.|.||||+|||||+..++...... .| .+.|+.-+...-+
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~----------------~vlyi~~E~~~~~------ 103 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA--GG----------------IAAFIDAEHALDP------ 103 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT--TC----------------CEEEEESSCCCCH------
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CC----------------eEEEEECCCCcCH------
Confidence 344433 478999999999999999999988887543211 12 2344443321100
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhC--CCEEEEeCCCCCC--
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHD--PAVLLIDEPTSGL-- 203 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~--p~llllDEPtsgL-- 203 (610)
. .+. .+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 104 ~--~a~--------------------~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~ 154 (349)
T 2zr9_A 104 E--YAK--------------------KLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPR 154 (349)
T ss_dssp H--HHH--------------------HTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCH
T ss_pred H--HHH--------------------HcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcch
Confidence 0 111 122210 000110 11222 2345678888765 9999999999998
Q ss_pred --------CH---HHHHHHHHHHHHH---HHhCCcEEEEEecCCcH---------------HHHHhcceEEEeeCCeEEE
Q 044112 204 --------DS---ASALNVASLLKYM---AVKQGKTIVLTIHQPGF---------------RILELFDQILLLSKGTVVH 254 (610)
Q Consensus 204 --------D~---~~~~~i~~~L~~l---a~~~g~tvi~~~H~~~~---------------~i~~~~D~v~~L~~G~iv~ 254 (610)
|+ ..++.+.+.++++ +++.|+|||+++|..+. .+..++|.++.+++++++.
T Consensus 155 ~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 155 AEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp HHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeee
Confidence 33 2222344444444 46779999999996431 2457889989888876654
Q ss_pred EcC
Q 044112 255 HGS 257 (610)
Q Consensus 255 ~g~ 257 (610)
.|+
T Consensus 235 ~g~ 237 (349)
T 2zr9_A 235 DGT 237 (349)
T ss_dssp SSS
T ss_pred cCc
Confidence 443
No 155
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.00 E-value=1.1e-09 Score=112.93 Aligned_cols=118 Identities=20% Similarity=0.161 Sum_probs=84.5
Q ss_pred cceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 044112 52 KNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMY 131 (610)
Q Consensus 52 ~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~ 131 (610)
++++++ +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+....... +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~-------------------~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAR-------------------EQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHH-------------------HHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHH-------------------HHH--
Confidence 678887 99999999999999999999999998754 78888877665321100 000
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCC-CCCCCHHHHHH
Q 044112 132 SARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEP-TSGLDSASALN 210 (610)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP-tsgLD~~~~~~ 210 (610)
..+.+..|+..... + ..-+-.+.+|.+++.+...+++++++||| ++|+|.....+
T Consensus 146 -----------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~ 201 (295)
T 1ls1_A 146 -----------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGE 201 (295)
T ss_dssp -----------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHH
T ss_pred -----------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHH
Confidence 01123345543211 0 11234456788999888899999999999 99999988888
Q ss_pred HHHHHHHH
Q 044112 211 VASLLKYM 218 (610)
Q Consensus 211 i~~~L~~l 218 (610)
+.+..+.+
T Consensus 202 l~~~~~~~ 209 (295)
T 1ls1_A 202 LARLKEVL 209 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhhc
Confidence 88877765
No 156
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.99 E-value=2.1e-11 Score=134.06 Aligned_cols=164 Identities=19% Similarity=0.216 Sum_probs=100.7
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHHC--CCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCC--CHHHH
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILAG--MIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLL--TVKET 128 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g--~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~l--Tv~E~ 128 (610)
.+++++.++..++|.|++||||||+++.|.. +.... .|++.+.+.+....++.. ...+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~--------~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSV--------YEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGG--------GTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhh--------hccCCcccceeecC
Confidence 4788889999999999999999999999875 33333 466666665543211111 0011111 12222
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHHHcCCcccccc--cccCCCCCccCHHHhhHH----------HHHHHHHhCCC-EE
Q 044112 129 LMYSAR-LRLHVGLNRAKARVSELLKELGLEHVANV--RIGGESSRGISGGEKRRV----------SIGVDLVHDPA-VL 194 (610)
Q Consensus 129 l~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~vg~~~~~~LSgGerqRv----------~ia~aL~~~p~-ll 194 (610)
...+.. ++ ...++.++| .++++..|+.+..+. .+. ..+||||+||. .+++++...|. ++
T Consensus 229 ~~~a~~~L~--~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 229 MKDAANALR--WCVNEMERR-YKLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHHHH--HHHHHHHHH-HHHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHHHH--HHHHHHHHH-HHHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 222111 11 012445555 378888998765432 221 36899998763 34556677888 79
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHH---HHhCCcEEEEEecCCc
Q 044112 195 LIDEPTSGLDSASALNVASLLKYM---AVKQGKTIVLTIHQPG 234 (610)
Q Consensus 195 llDEPtsgLD~~~~~~i~~~L~~l---a~~~g~tvi~~~H~~~ 234 (610)
++||+++-+|.. ...+.+.|.++ .+..|.++|++||.|+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 999999988843 34455555544 4445789999999997
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.92 E-value=9.1e-10 Score=113.47 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=89.3
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLH 138 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~ 138 (610)
++|++++++||||+||||+++.|++.+.+. +| +.+.++.+|.. ..+..|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~---- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE--KH---------------KKIAFITTDTY---RIAAVEQLKTYAE---- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT--TC---------------CCEEEEECCCS---STTHHHHHHHHHT----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh--cC---------------CEEEEEecCcc---cchHHHHHHHHHH----
Confidence 579999999999999999999999987643 45 23566666652 2355565544321
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 044112 139 VGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYM 218 (610)
Q Consensus 139 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~l 218 (610)
..|+.... ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+
T Consensus 159 ---------------~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l 208 (296)
T 2px0_A 159 ---------------LLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETI 208 (296)
T ss_dssp ---------------TTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHS
T ss_pred ---------------hcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHH
Confidence 12332110 1122 22344555 45999999999 9999987665444433322
Q ss_pred H--HhCCcEEEE-EecCCcHHHHHhcceEEEeeCCeEEEE
Q 044112 219 A--VKQGKTIVL-TIHQPGFRILELFDQILLLSKGTVVHH 255 (610)
Q Consensus 219 a--~~~g~tvi~-~~H~~~~~i~~~~D~v~~L~~G~iv~~ 255 (610)
. ...+.++++ ++|+.+ ++.+.+|++..+..+.++..
T Consensus 209 ~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 209 PFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEE
T ss_pred hhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEe
Confidence 1 122334444 478765 57888888776777777764
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.89 E-value=3.2e-11 Score=136.39 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=100.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCC----------
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEV---------- 118 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~---------- 118 (610)
.+++++++.+++|+.++|+||||+|||||+++|++..++. ..|.+.+++.+.+ .....++++++...
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~--~~~p~i~~~p~g~~~~~~e~~~~~ 124 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPED--ENMPRIKTVPACQGRRIVEKYREK 124 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTC--TTSCEEEEEETTHHHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCccc--ccCCcEEEEecchHHHHHHHHHHh
Confidence 6899999999999999999999999999999999998764 2488999887764 23456888887531
Q ss_pred ------------CCCCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHH
Q 044112 119 ------------LFPLLTVKETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVD 186 (610)
Q Consensus 119 ------------l~~~lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~a 186 (610)
.+..+++.+|+.....-..+.+.- .+.....-+.+|..+..... ..++|+|++|++..++.
T Consensus 125 ~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v--~~~~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~~g~~ 197 (604)
T 3k1j_A 125 AKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFI--DATGAHAGALLGDVRHDPFQ-----SGGLGTPAHERVEPGMI 197 (604)
T ss_dssp HHHHTCC-----------CCCEEEECCTTCSSCCEE--ECTTCCHHHHHCEECCCCC---------CCCCGGGGEECCHH
T ss_pred hccchhhhhhcccccccccccceeeccccCCCCCEE--EcCCCCHHhcCceEEechhh-----cCCccccccccccCcee
Confidence 111111111111000000000000 00000011122221111111 14799999999999999
Q ss_pred HHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 044112 187 LVHDPAVLLIDEPTSGLDSASALNVASLLKY 217 (610)
Q Consensus 187 L~~~p~llllDEPtsgLD~~~~~~i~~~L~~ 217 (610)
...++.+||+||... |++.....+.+.|++
T Consensus 198 ~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 198 HRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999988 899988888888864
No 159
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.89 E-value=4.8e-10 Score=122.42 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=48.2
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN 102 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~ 102 (610)
.+|+|+|+++++ |+++|+|||||||||||++|+|+++|+ +|+|.++|+++.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~~~~ 68 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD--LTLLNFRNTTEA 68 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC--TTTCCCCCTTSC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC--CCEEEECCEEcc
Confidence 689999999999 999999999999999999999999887 999999998764
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.87 E-value=3.2e-10 Score=108.61 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=77.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCC---C------ceeEEEECCEeCCh-----hcccceEEEEccCCCC-CCCCCHHH
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPLR---R------VSGSVLVNEQPMNI-----TQFRRISGYVTQDEVL-FPLLTVKE 127 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~~---~------~~G~I~~~g~~~~~-----~~~~~~~~yv~Q~~~l-~~~lTv~E 127 (610)
.++|+|+||||||||++.++|...+. + .+|+|.++|+++.. ....+..++++|.... ...++|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 68999999999999999999986541 1 47999999976421 1111112222221000 00011111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH---HcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCC
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLK---ELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLD 204 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD 204 (610)
... ....+.+..+++ .....+..-..+++. .+|..-..+++.+|++++.+|+++++| ||++|
T Consensus 111 ~~~-----------~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald 175 (191)
T 1oix_A 111 IAK-----------HLTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALD 175 (191)
T ss_dssp TTC-----------HHHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTT
T ss_pred CcC-----------HHHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeCCC
Confidence 100 000011111111 111011000112211 133333344578999999999999999 99999
Q ss_pred HHHHHHHHHHHHH
Q 044112 205 SASALNVASLLKY 217 (610)
Q Consensus 205 ~~~~~~i~~~L~~ 217 (610)
..+..++++.|.+
T Consensus 176 ~~~v~~l~~~l~~ 188 (191)
T 1oix_A 176 STNVEAAFQTILT 188 (191)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999999998865
No 161
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.87 E-value=2e-12 Score=131.76 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=84.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCC-CCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEV-LFPLLT 124 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lT 124 (610)
.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...++.+++++|+.. ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 5789999999999 89999999999999999999864 6899998876421 122344667777753 566778
Q ss_pred HHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCE
Q 044112 125 VKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAV 193 (610)
Q Consensus 125 v~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~l 193 (610)
+.|++......+.. ...++.++.+.+++ ..|||||+||+.+++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 88888543221110 01112222333332 36899999999999999999976
No 162
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.85 E-value=1.6e-09 Score=114.22 Aligned_cols=161 Identities=13% Similarity=0.079 Sum_probs=96.3
Q ss_pred ccccee--EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE-EECCEeCChhcccceEEEEccCCCCCCCCCHH
Q 044112 50 ILKNVN--CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV-LVNEQPMNITQFRRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 50 iL~~vs--~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I-~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~ 126 (610)
-|+.+- +-+++|+++.|.||||+|||||+..+++...+. .|.| ++++.......+.+.+|+.+|+..+....++.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e 125 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHH
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHH
Confidence 455543 478999999999999999999999999876433 4544 66665432223334556666655444445665
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC-CccCH--HHhhHHHHHHHHHhCCCEEEEeCCCCC
Q 044112 127 ETLMYSARLRLHVGLNRAKARVSELLKELGLEH-VANVRIGGESS-RGISG--GEKRRVSIGVDLVHDPAVLLIDEPTSG 202 (610)
Q Consensus 127 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~-~~LSg--GerqRv~ia~aL~~~p~llllDEPtsg 202 (610)
+.+.... .+++.-+..- ..|..- .-.+ ..++| ||+|+...|+++.
T Consensus 126 ~~l~~~~----------------~l~~~~~~dlvVIDSi~-~l~~~~el~g~~G~~q~~~qar~la-------------- 174 (356)
T 3hr8_A 126 QALEIVD----------------ELVRSGVVDLIVVDSVA-ALVPRAEIEGAMGDMQVGLQARLMS-------------- 174 (356)
T ss_dssp HHHHHHH----------------HHHHTSCCSEEEEECTT-TCCCHHHHTTCCCSSCSSHHHHHHH--------------
T ss_pred HHHHHHH----------------HHhhhcCCCeEEehHhh-hhcChhhhcccchhhHHHHHHHHHH--------------
Confidence 5543321 1111111110 011100 0011 12333 6677777777665
Q ss_pred CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc---------------HHHHHhcceEEEeeCC
Q 044112 203 LDSASALNVASLLKYMAVKQGKTIVLTIHQPG---------------FRILELFDQILLLSKG 250 (610)
Q Consensus 203 LD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~---------------~~i~~~~D~v~~L~~G 250 (610)
++++.|++++++.|.+||++.|-.+ ..+..++|-++.+.++
T Consensus 175 -------~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k~ 230 (356)
T 3hr8_A 175 -------QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRRG 230 (356)
T ss_dssp -------HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEEE
T ss_pred -------HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEec
Confidence 6677888888888999999888621 1134678988888864
No 163
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.85 E-value=1.1e-10 Score=112.69 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=48.3
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHH
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETL 129 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l 129 (610)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ...++.++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56788999999999999999999999999863 35566655432 12345678999987666655555443
No 164
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.83 E-value=3.2e-12 Score=128.24 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=86.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCC-CCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEV-LFPLLT 124 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~lT 124 (610)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.++.. ...++.+++++|+.. ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 5789999999999 99999999999999999999864 6889998876421 122334567777643 556777
Q ss_pred HHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCC
Q 044112 125 VKETLMYSARLRLH---VGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPT 200 (610)
Q Consensus 125 v~E~l~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt 200 (610)
+.|++......+.. ...++..+.+.+++ ..|||||+||+.+++++..+|++ +|++.
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 88888443221110 01122223333332 36899999999999999999986 45543
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.70 E-value=4.6e-10 Score=111.11 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=41.5
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-----------hcccceEEEEccC
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-----------TQFRRISGYVTQD 116 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-----------~~~~~~~~yv~Q~ 116 (610)
++++++ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.. ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD--LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC--TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC--CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455556 899999999999999999999999876 8999999987621 1235678999984
No 166
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.59 E-value=2.3e-09 Score=101.57 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred cc--cceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE---------ECCEeCChhcccceEEEEccCCC
Q 044112 50 IL--KNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL---------VNEQPMNITQFRRISGYVTQDEV 118 (610)
Q Consensus 50 iL--~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~---------~~g~~~~~~~~~~~~~yv~Q~~~ 118 (610)
.+ +++++.+.+| +++|+||||||||||+++|.+.+.+. .|... .+|...........+..++|++.
T Consensus 14 ~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 14 SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL--SAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC--CTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC--cccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 46 7899999999 99999999999999999999987653 23211 11111100123346788888753
Q ss_pred --CCC---CCCHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHH
Q 044112 119 --LFP---LLTVKETLMYS--ARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVS 182 (610)
Q Consensus 119 --l~~---~lTv~E~l~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ 182 (610)
+.+ .+++...+.-. ...+.. ......+.+.++++.+++....- .-++.||.+++.
T Consensus 91 ~~~~~~~~~~~i~r~~~~~~~~~~~i~-g~~~~~~~~~~~l~~~~l~~~~~--------~~~~qg~~~~l~ 152 (182)
T 3kta_A 91 RGFPIDEDEVVIRRRVYPDGRSSYWLN-GRRATRSEILDILTAAMISPDGY--------NIVLQGDITKFI 152 (182)
T ss_dssp CCSSSSSSEEEEEEEECTTSCEEEEET-TEEECHHHHHHHHHHTTCCTTCT--------TEECTTCTTHHH
T ss_pred cccccCCcEEEEEEEEEeCCcEEEEEC-CeEcCHHHHHHHHHHcCCCCCCC--------EEEEcccHHHHH
Confidence 111 12332211000 000111 11112456788999999875321 236667766654
No 167
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.56 E-value=5.7e-08 Score=101.61 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=87.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++..... .| ..+.|+.= .++..+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---------~g---------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---------DD---------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---------TT---------CEEEEEES------SSCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---------cC---------CeEEEEeC------CCCHHHH
Confidence 467777778999999999999999999999888765321 11 12344332 2333332
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
. .|.......+++.+..+ ..||.+|.+|+..|...+.++++++.|+|... .
T Consensus 90 ~----------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i 140 (338)
T 4a1f_A 90 A----------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----I 140 (338)
T ss_dssp H----------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----H
T ss_pred H----------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----H
Confidence 2 22222222233333222 26999999999999999999999999998654 3
Q ss_pred HHHHHHHHHHHHhC-CcEEEEEec
Q 044112 209 LNVASLLKYMAVKQ-GKTIVLTIH 231 (610)
Q Consensus 209 ~~i~~~L~~la~~~-g~tvi~~~H 231 (610)
.++...++++.++. |..+|++-|
T Consensus 141 ~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEec
Confidence 36667777776666 778888765
No 168
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.55 E-value=4.5e-08 Score=93.82 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=33.2
Q ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 044112 180 RVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMA 219 (610)
Q Consensus 180 Rv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la 219 (610)
....|++++.+|++.++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356689999999999999 99999999999998887654
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.49 E-value=1.9e-07 Score=98.93 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=88.4
Q ss_pred CceE-EEEECCCCCcHHHHHHHHHCCCCC---------CCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHH--
Q 044112 60 PGEI-MAIVGPSGAGKTTLLDILAGMIPL---------RRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKE-- 127 (610)
Q Consensus 60 ~Ge~-~ailG~nGaGKSTLL~~L~g~~~~---------~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E-- 127 (610)
+|-. ++|+|++|||||||+|.|+|.... ++.+|.|.++|.++. +....|++.|.+. ..|..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~ 249 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFF 249 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHH
Confidence 3444 999999999999999999998642 134799999987542 2223455444221 11211
Q ss_pred -HHHHHHH--h--c---CCCCH---HHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHH----HHH-HhCC
Q 044112 128 -TLMYSAR--L--R---LHVGL---NRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIG----VDL-VHDP 191 (610)
Q Consensus 128 -~l~~~~~--~--~---~~~~~---~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia----~aL-~~~p 191 (610)
++..... + . ..... .+..+.+.++++.+++.+..--.|+| +...+|+|+++|+.++ +++ ..+|
T Consensus 250 ~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 250 VTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 1111000 0 0 00111 22233467788888876543112221 2346788888988887 444 3344
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 044112 192 AVLLIDEPTSGLDSASALNVASLLKYMAVK 221 (610)
Q Consensus 192 ~llllDEPtsgLD~~~~~~i~~~L~~la~~ 221 (610)
++ +|+|++|......+.+.|.+....
T Consensus 329 ~~----~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 329 DV----IPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EE----EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cE----EEEECCCCcCHHHHHHHHHHHhcc
Confidence 44 899999999999999999886543
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.49 E-value=4.6e-09 Score=101.43 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=44.0
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChh--cccceEEEEccCCCCCCCCCHHH
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNIT--QFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~--~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
..+-.+..++|++++|+||||||||||+++|++.+ |.+.++|.++... ..+...++++|+....+.+++.|
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 91 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLA 91 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHH
Confidence 33334667899999999999999999999999974 7888988776421 11223567777644333333333
No 171
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.47 E-value=1.6e-07 Score=102.64 Aligned_cols=114 Identities=23% Similarity=0.397 Sum_probs=75.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
..++++++.+++| +.|.||||+|||||+++|++..... -+.+++.+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----f~~is~~~~--------------------------- 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----FFHISGSDF--------------------------- 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----EEEEEGGGT---------------------------
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----eeeCCHHHH---------------------------
Confidence 3566777778888 7899999999999999999853210 011111000
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCC---------
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEP--------- 199 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEP--------- 199 (610)
.+..+| .|++++|-.++.+....|.+||+||+
T Consensus 86 --------------------------------~~~~~g-------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~ 126 (476)
T 2ce7_A 86 --------------------------------VELFVG-------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGA 126 (476)
T ss_dssp --------------------------------TTCCTT-------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---
T ss_pred --------------------------------HHHHhc-------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccc
Confidence 000111 25778888899999999999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHHH---HhCCcEEEEEecCCc
Q 044112 200 -TSGLDSASALNVASLLKYMA---VKQGKTIVLTIHQPG 234 (610)
Q Consensus 200 -tsgLD~~~~~~i~~~L~~la---~~~g~tvi~~~H~~~ 234 (610)
++|.|......+.++|..+- ...+..||.+||+|+
T Consensus 127 ~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 127 GLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred ccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 34677776666777776663 234789999999985
No 172
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.47 E-value=4.3e-10 Score=119.58 Aligned_cols=142 Identities=16% Similarity=0.157 Sum_probs=82.5
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCC-CCCCCCHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEV-LFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~-l~~~lTv~E 127 (610)
.+++++|+.+++|++++|.||||||||||+++|+|.. +|++..-+.+- ...+..+++++|... ++...+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 6899999999999999999999999999999999853 57776522111 111223566666653 233333221
Q ss_pred HHHHHHHhcCCCCHH-HHHHHHHHHHHH---cCCcc-cc---ccc--cc--CCCCCccCHHHhhHHHHHHHHHhCCCEEE
Q 044112 128 TLMYSARLRLHVGLN-RAKARVSELLKE---LGLEH-VA---NVR--IG--GESSRGISGGEKRRVSIGVDLVHDPAVLL 195 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~-~~~~~v~~~l~~---lgL~~-~~---~~~--vg--~~~~~~LSgGerqRv~ia~aL~~~p~lll 195 (610)
.+ .-+...... .....+...++- ..+.. .. +.. .| +.....+++|+++|+..+.+++.+|++++
T Consensus 230 ~~----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLli 305 (377)
T 1svm_A 230 GE----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKH 305 (377)
T ss_dssp TT----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHH
T ss_pred HH----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEE
Confidence 11 000000000 011222333321 00110 00 000 00 12335789999999998888888999877
Q ss_pred -EeCCCC
Q 044112 196 -IDEPTS 201 (610)
Q Consensus 196 -lDEPts 201 (610)
||+|+.
T Consensus 306 yLd~~~~ 312 (377)
T 1svm_A 306 CLERSEF 312 (377)
T ss_dssp HHHTCTH
T ss_pred EEeCCHH
Confidence 999987
No 173
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.32 E-value=5.4e-07 Score=104.46 Aligned_cols=75 Identities=12% Similarity=0.164 Sum_probs=59.5
Q ss_pred CCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEE-ecCCcHHHHHhcceEEE
Q 044112 170 SRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS-GLDSASALNVASLLKYMAVKQGKTIVLT-IHQPGFRILELFDQILL 246 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~~L~~la~~~g~tvi~~-~H~~~~~i~~~~D~v~~ 246 (610)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+.. ...++|++| ||+++ .+.+++++..+
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~-~l~~~~~~~~v 264 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE-KFQRYFNDAPL 264 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH-HHHHHTTSCCE
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH-HHHHHhcCCCc
Confidence 35689999999999999999999999999996 999888777777776553 235677775 89876 57778875433
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.30 E-value=5.8e-08 Score=97.46 Aligned_cols=52 Identities=35% Similarity=0.385 Sum_probs=35.9
Q ss_pred eEEEEeE-EEEEecccccccccccccccccccccccceeEEEeC---ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 18 RIRTKKL-TYRSFRGVDEFNWFCSWKEKPPAVCILKNVNCEARP---GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 18 ~l~~~~l-s~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.|+++|+ +++|. +.. .+|+|+|+++++ |+.++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~---------------~~~-~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD---------------EEQ-QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------------------C-HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec---------------Ccc-hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6899999 98872 233 799999999999 9999999999999999999999864
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.29 E-value=1.7e-07 Score=90.11 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=27.9
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCC
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLR 88 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~ 88 (610)
+++++|++++|+||||||||||+++|++...++
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 367899999999999999999999999998553
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.28 E-value=1.2e-07 Score=98.56 Aligned_cols=79 Identities=19% Similarity=0.171 Sum_probs=59.4
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh-------hcc-----cceEEEE-ccCC
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI-------TQF-----RRISGYV-TQDE 117 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~-------~~~-----~~~~~yv-~Q~~ 117 (610)
++++++..++|++++|+|+||+||||++..|++.+.+. .|+|.+.+.+... ..+ +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 37899999999999999999999999999999998754 7899998877632 122 4568888 6765
Q ss_pred CCCCCCCHHHHHHH
Q 044112 118 VLFPLLTVKETLMY 131 (610)
Q Consensus 118 ~l~~~lTv~E~l~~ 131 (610)
...|..++++++..
T Consensus 173 ~~~p~~~~~~~l~~ 186 (320)
T 1zu4_A 173 NADPASVVFDAIKK 186 (320)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 44444444555443
No 177
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.26 E-value=2.1e-08 Score=111.53 Aligned_cols=43 Identities=33% Similarity=0.402 Sum_probs=37.0
Q ss_pred EEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee-EEE-ECCEeC
Q 044112 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG-SVL-VNEQPM 101 (610)
Q Consensus 57 ~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G-~I~-~~g~~~ 101 (610)
.+++|++++|+|+||||||||+++|+|++.+. +| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~--~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM--GGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT--CSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc--CCceEEEECCcHH
Confidence 57899999999999999999999999998765 55 674 888654
No 178
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.23 E-value=6e-09 Score=114.63 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=84.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChh---cccceEEEEccCCC-CCCCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNIT---QFRRISGYVTQDEV-LFPLLT 124 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~---~~~~~~~yv~Q~~~-l~~~lT 124 (610)
.+++++++.+++| +.|.||||+|||||+++|++... .+.+.++|.++... ...+.+..++|+.. ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 5788999999999 89999999999999999999863 57899998765321 11223445566542 344555
Q ss_pred HHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCC
Q 044112 125 VKETLMYSARLRL---HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTS 201 (610)
Q Consensus 125 v~E~l~~~~~~~~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPts 201 (610)
+.|++......+. ....++..+.+.+++. .+||||+|+..|+++...+|++ |||+..
T Consensus 128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 5555532211111 0112233334444443 4788999999999999999987 888874
No 179
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.23 E-value=7.7e-08 Score=96.53 Aligned_cols=64 Identities=22% Similarity=0.259 Sum_probs=48.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHH---CCCCCCCceeEEE--------ECCEeCCh----hcccceEEEE
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILA---GMIPLRRVSGSVL--------VNEQPMNI----TQFRRISGYV 113 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~---g~~~~~~~~G~I~--------~~g~~~~~----~~~~~~~~yv 113 (610)
.++++++ ++|++++|+|||||||||++++|+ |+..++ +|.+. .+|.++.. ..+++.++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d--~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD--SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE--HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC--CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 3555544 789999999999999999999999 987665 89998 88887632 3456678898
Q ss_pred ccCC
Q 044112 114 TQDE 117 (610)
Q Consensus 114 ~Q~~ 117 (610)
+|++
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8754
No 180
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.21 E-value=2.3e-07 Score=88.43 Aligned_cols=27 Identities=44% Similarity=0.626 Sum_probs=25.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 678999999999999999999999864
No 181
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.20 E-value=1.3e-06 Score=91.97 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=48.6
Q ss_pred CccCHHHhhHHHHHHHHHhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEe--cCCc
Q 044112 171 RGISGGEKRRVSIGVDLVHDPAVLLID-EPTSGLDSASALNVASLLKYMAVKQGKTIVLTI--HQPG 234 (610)
Q Consensus 171 ~~LSgGerqRv~ia~aL~~~p~llllD-EPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~--H~~~ 234 (610)
..+|+||+|++. +.+...++-++++| +|.+|+|......+++.+++... ++.+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 468999998876 55555677789999 99999999998888888876542 67788888 7764
No 182
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.19 E-value=8.3e-08 Score=92.54 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=42.7
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEE--EECCEeC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSV--LVNEQPM 101 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I--~~~g~~~ 101 (610)
...+..++..++|++++|+||||||||||++.|++.+. . .|.+ .++|.++
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~--~G~~~~~~d~d~~ 64 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q--KGKLCYILDGDNV 64 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H--TTCCEEEEEHHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h--cCceEEEecCchh
Confidence 56777888889999999999999999999999999875 2 5777 8887654
No 183
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.17 E-value=2.8e-07 Score=88.88 Aligned_cols=137 Identities=19% Similarity=0.193 Sum_probs=77.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCCCHH
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHVGLN 142 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~~~~ 142 (610)
+++|+|||||||||+.++|+++ |...+++-. +.+.+. + +.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-------g~~~id~d~-----~~~~~~---~-----~~-------------------- 43 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-------GVPLVDADV-----VAREVV---A-----KD-------------------- 43 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-------TCCEEEHHH-----HHHHTT---C-----SS--------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC-------CCcccchHH-----HHHHHc---c-----CC--------------------
Confidence 6899999999999999999983 222333211 110000 0 00
Q ss_pred HHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 044112 143 RAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQ 222 (610)
Q Consensus 143 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~ 222 (610)
...+.++.+.+|... -.+.|+.+|..++.....+|+.+..+ ++.++|.....+.+.+++. .
T Consensus 44 --~~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~ 104 (206)
T 1jjv_A 44 --SPLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---T 104 (206)
T ss_dssp --CHHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---C
T ss_pred --hHHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---C
Confidence 012344555555431 13678899999998888888654333 3455666666665555432 2
Q ss_pred CcEEEEEecCCcHH-HHHhcceEEEeeCCeEEEEcChhHHHHHH
Q 044112 223 GKTIVLTIHQPGFR-ILELFDQILLLSKGTVVHHGSLDLLEHRL 265 (610)
Q Consensus 223 g~tvi~~~H~~~~~-i~~~~D~v~~L~~G~iv~~g~~~~~~~~~ 265 (610)
+.++|+.+|..... ....+|.+++++ .+++...+..
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~-------~~~e~~~~Rl 141 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD-------VSPQTQLARS 141 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE-------CCHHHHHHHH
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE-------CCHHHHHHHH
Confidence 55888888876531 246788877774 4555555544
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.17 E-value=5.3e-06 Score=87.40 Aligned_cols=158 Identities=15% Similarity=0.177 Sum_probs=82.1
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC--CCCCCceeEEEECCEeCCh---hcccceEEEEccCCC-CCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM--IPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEV-LFPL 122 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~--~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~-l~~~ 122 (610)
.+|++++++++ .++|+|++|||||||++.|+|. ++.+ +|.++-....+.. ..-.+..+...+.+. .+..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~--~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRG--SGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTD 99 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCC--SSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCC--CCcccCcceEEEEecCCCcccceeeeecCCCcccCC
Confidence 58999999998 8999999999999999999994 3443 4544322222110 001122333333221 1111
Q ss_pred -CCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----c----------------ccccccccCCC---CCccCHHHh
Q 044112 123 -LTVKETLMYSARLRLHVGLNRAKARVSELLKELGL----E----------------HVANVRIGGES---SRGISGGEK 178 (610)
Q Consensus 123 -lTv~E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~~~vg~~~---~~~LSgGer 178 (610)
-.+.+.+. ++.....|- . ...|++ |-.. ...-++.++
T Consensus 100 ~~~v~~~i~------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~~ 160 (360)
T 3t34_A 100 FAAVRKEIQ------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIVK 160 (360)
T ss_dssp HHHHHHHHH------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHHH
T ss_pred HHHHHHHHH------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHHH
Confidence 01111111 111111110 0 112222 1000 123567889
Q ss_pred hHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec
Q 044112 179 RRVSIGVDLVHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIH 231 (610)
Q Consensus 179 qRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H 231 (610)
++..+++..+.+|+++++.-..+..|..+ ....++++.+......+|++.+.
T Consensus 161 ~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 161 DIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 99999999999999777774334445433 45566677665433467777775
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.14 E-value=1.8e-06 Score=89.40 Aligned_cols=132 Identities=13% Similarity=0.156 Sum_probs=86.1
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.=+ ++..+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~---~g---------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD---ND---------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT---TT---------------CEEEEEESS------SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cC---------------CeEEEEECC------CCHHHH
Confidence 468888888999999999999999999999888753211 11 124454332 344332
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Q 044112 129 LMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASA 208 (610)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~ 208 (610)
.. +.......+++.+..+.. ..||++|++|+..|...+.++++++.|+|... .
T Consensus 112 ~~----------------R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~ 164 (315)
T 3bh0_A 112 IK----------------RLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----V 164 (315)
T ss_dssp HH----------------HHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----H
T ss_pred HH----------------HHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----H
Confidence 22 221111122222222100 13999999999999999999999999998643 4
Q ss_pred HHHHHHHHHHHHhCCcE--EEEEec
Q 044112 209 LNVASLLKYMAVKQGKT--IVLTIH 231 (610)
Q Consensus 209 ~~i~~~L~~la~~~g~t--vi~~~H 231 (610)
.++...++++.++.|.. +|++-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 45666677776666767 777765
No 186
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.09 E-value=5.2e-08 Score=101.26 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=34.1
Q ss_pred ccccceeEEEeCce------EEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 49 CILKNVNCEARPGE------IMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge------~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
..|++++..+..++ ++||+||||||||||+++|++++..
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 56778888887776 9999999999999999999998753
No 187
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.08 E-value=1.4e-05 Score=83.72 Aligned_cols=141 Identities=12% Similarity=0.048 Sum_probs=81.1
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCC-CCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHH
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMI-PLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSAR 134 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~-~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~ 134 (610)
+-+++|+++.|.||+|+|||||+..++... .+....| . ...+.|+.-+..+ ...+-.....+
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg------~-------~~~vlyi~~E~~~----~~~~l~~~~~~ 179 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY------P-------GGKIIFIDTENTF----RPDRLRDIADR 179 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB------C-------CCEEEEEESSSCC----CHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC------C-------CCeEEEEECCCCC----CHHHHHHHHHH
Confidence 579999999999999999999999998752 1110000 0 1234555444321 22222222222
Q ss_pred hcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH-hhHHHHHHHHH----hCCCEEEEeCCCCCCCHH---
Q 044112 135 LRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE-KRRVSIGVDLV----HDPAVLLIDEPTSGLDSA--- 206 (610)
Q Consensus 135 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~aL~----~~p~llllDEPtsgLD~~--- 206 (610)
+ +... +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-.+..
T Consensus 180 ~--g~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~ 238 (343)
T 1v5w_A 180 F--NVDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG 238 (343)
T ss_dssp T--TCCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCG
T ss_pred c--CCCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcc
Confidence 2 1111 1233322111 1223332 24455566666 568999999999865432
Q ss_pred ---------HHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 207 ---------SALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 207 ---------~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
...++++.|++++++.|.+||++.|-..
T Consensus 239 ~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 239 RGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeecee
Confidence 1356777788888888999998888643
No 188
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.06 E-value=2.1e-05 Score=81.72 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=83.1
Q ss_pred cccee-EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHH
Q 044112 51 LKNVN-CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETL 129 (610)
Q Consensus 51 L~~vs-~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l 129 (610)
|+.+- +-+++|+++.|.||+|+|||||+..++.........| |. ...+.|+.-+..+ ...+-.
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~-------~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL-------SGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC-------SCEEEEEESSSCC----CHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC-------CCeEEEEECCCCC----CHHHHH
Confidence 44432 5799999999999999999999998886432110011 00 1234555444321 122222
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHH-HhhHHHHHHHHH---hCCCEEEEeCCCCCCCH
Q 044112 130 MYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGG-EKRRVSIGVDLV---HDPAVLLIDEPTSGLDS 205 (610)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgG-erqRv~ia~aL~---~~p~llllDEPtsgLD~ 205 (610)
....++ +... +++++.+ .+. +..++. +.+.+..+++++ .+|+++++|+.++-.+.
T Consensus 160 ~~~~~~--g~~~-------~~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 160 NMAKAL--GLDI-------DNVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHT--TCCH-------HHHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHh--CCCH-------HHHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 222222 1111 1122211 110 122333 235677777787 57999999999975432
Q ss_pred --------H----HHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 206 --------A----SALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 206 --------~----~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
. ...++++.|++++++.+.+||++.|-.
T Consensus 219 ~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 219 EYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred hhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 1 235667778888888899999987753
No 189
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.05 E-value=1.4e-06 Score=99.40 Aligned_cols=133 Identities=15% Similarity=0.095 Sum_probs=76.8
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCCh---hcccceEEEEccCCCCCCCCCHHHHHHH
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNI---TQFRRISGYVTQDEVLFPLLTVKETLMY 131 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~---~~~~~~~~yv~Q~~~l~~~lTv~E~l~~ 131 (610)
|+.+++|+.++|+|++|+|||||++.|++...+....|+| .+|..+.. .+.++.+++..|...+... +++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 3567889999999999999999999999765432336777 56655422 2234445555554333221 1000
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHH
Q 044112 132 SARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSASALNV 211 (610)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPtsgLD~~~~~~i 211 (610)
...|+. |. ..+ ........-..+..++++| |+.|+|+.+. .+
T Consensus 77 ---------------------------nliDTp-G~---~~f-----~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~-~~ 118 (665)
T 2dy1_A 77 ---------------------------FLLDAP-GY---GDF-----VGEIRGALEAADAALVAVS-AEAGVQVGTE-RA 118 (665)
T ss_dssp ---------------------------EEEECC-CS---GGG-----HHHHHHHHHHCSEEEEEEE-TTTCSCHHHH-HH
T ss_pred ---------------------------EEEeCC-Cc---cch-----HHHHHHHHhhcCcEEEEEc-CCcccchhHH-HH
Confidence 112221 10 011 1112222335677889999 9999998766 33
Q ss_pred HHHHHHHHHhCCcEEEEEecCCcH
Q 044112 212 ASLLKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 212 ~~~L~~la~~~g~tvi~~~H~~~~ 235 (610)
+ +.+. +.+..+|++.|..+.
T Consensus 119 ~---~~~~-~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 119 W---TVAE-RLGLPRMVVVTKLDK 138 (665)
T ss_dssp H---HHHH-HTTCCEEEEEECGGG
T ss_pred H---HHHH-HccCCEEEEecCCch
Confidence 3 3332 347888888998763
No 190
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.03 E-value=2e-06 Score=82.72 Aligned_cols=37 Identities=27% Similarity=0.235 Sum_probs=24.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+++|||+++++|++++|+||+||||||+.+.|++.+
T Consensus 13 ~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 13 LGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999865
No 191
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.98 E-value=3.4e-05 Score=81.09 Aligned_cols=45 Identities=11% Similarity=-0.019 Sum_probs=35.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh--CCcEEEEEecCCc
Q 044112 189 HDPAVLLIDEPTSGLDSASALNVASLLKYMAVK--QGKTIVLTIHQPG 234 (610)
Q Consensus 189 ~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~--~g~tvi~~~H~~~ 234 (610)
.+|.++++||+... |......+.+.+.+.... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 888888888888766431 4789999999985
No 192
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.95 E-value=3.1e-06 Score=80.09 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=29.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEE
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLV 96 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~ 96 (610)
+|++++|+||||||||||++.|++..++ ...|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeec
Confidence 6899999999999999999999998753 23565544
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.95 E-value=4.6e-05 Score=77.48 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHHh---CCcEEEEEecCCc---HHH
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTSGLDSA----------SALNVASLLKYMAVK---QGKTIVLTIHQPG---FRI 237 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPtsgLD~~----------~~~~i~~~L~~la~~---~g~tvi~~~H~~~---~~i 237 (610)
+++++.|..++.+...+|.++++||+.+-++.. ....++..+...... .+..||.+++++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356677777777778899999999998766532 223344444433211 2456788888753 344
Q ss_pred HHhcceEEEe
Q 044112 238 LELFDQILLL 247 (610)
Q Consensus 238 ~~~~D~v~~L 247 (610)
.+-|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 5556665444
No 194
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.94 E-value=2.1e-06 Score=93.13 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=48.8
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEE-eeCCeEEEEcChh
Q 044112 189 HDPAVLLIDEPTSGLDS-ASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILL-LSKGTVVHHGSLD 259 (610)
Q Consensus 189 ~~p~llllDEPtsgLD~-~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~-L~~G~iv~~g~~~ 259 (610)
.+|++|++||+..-.+. .++..+.+.+.++. +.|+.||+++|.+..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 67888999998875 46889999999864332223333332 4457666666654
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.93 E-value=2.1e-06 Score=84.65 Aligned_cols=41 Identities=24% Similarity=0.347 Sum_probs=35.3
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeC
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM 101 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~ 101 (610)
+...++|++++|.|+||||||||+++|+|. .|+|.+.++|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344578999999999999999999999997 47888888764
No 196
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.93 E-value=1.4e-05 Score=82.14 Aligned_cols=65 Identities=9% Similarity=0.173 Sum_probs=47.7
Q ss_pred cCHHHhhHHHHHHHHH--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHhCCc--EEEEEecCCcHHHHHhcceEE
Q 044112 173 ISGGEKRRVSIGVDLV--HDPAVLLIDEPTSGLDSAS-ALNVASLLKYMAVKQGK--TIVLTIHQPGFRILELFDQIL 245 (610)
Q Consensus 173 LSgGerqRv~ia~aL~--~~p~llllDEPtsgLD~~~-~~~i~~~L~~la~~~g~--tvi~~~H~~~~~i~~~~D~v~ 245 (610)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++..|. .+.++.|+-. .+..++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 898886 4566666 67889998 7899876 67788888888755453 6667777765 4777777654
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.93 E-value=3.9e-07 Score=85.43 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=31.7
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM 101 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~ 101 (610)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999999863 6777877654
No 198
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.86 E-value=3.5e-05 Score=83.53 Aligned_cols=171 Identities=17% Similarity=0.180 Sum_probs=97.1
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKET 128 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~ 128 (610)
.-|+.+.+-+++|+++.|.|++|+|||||...++...... .| ..+.|+.=+ ++..+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g---------------~~vl~~slE------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EG---------------VGVGIYSLE------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TC---------------CCEEEEESS------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CC---------------CeEEEEECC------CCHHHH
Confidence 3577777779999999999999999999998888653211 11 012222111 122221
Q ss_pred HHH--HHHhcC-------CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH--hCCCEEEEe
Q 044112 129 LMY--SARLRL-------HVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV--HDPAVLLID 197 (610)
Q Consensus 129 l~~--~~~~~~-------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~llllD 197 (610)
..- +..... +.-..+..+++.+.++.+.-.+.. +- ...++|..+.+ +.++.+. .+|+++++|
T Consensus 245 ~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~---i~--d~~~~s~~~l~--~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 245 TLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIY---ID--DTPDLTLMEVR--ARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEE---EE--CCTTCBHHHHH--HHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEE---EE--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEc
Confidence 110 000000 000112223344444443222111 10 11356776653 4555555 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHHhCCcEEEEEecCCcH------------------HHHHhcceEEEeeC
Q 044112 198 EPTSGLDS----------ASALNVASLLKYMAVKQGKTIVLTIHQPGF------------------RILELFDQILLLSK 249 (610)
Q Consensus 198 EPtsgLD~----------~~~~~i~~~L~~la~~~g~tvi~~~H~~~~------------------~i~~~~D~v~~L~~ 249 (610)
..+.=.+. ....++.+.|+.+|++.+.+||+++|-... .+.+.+|.|+.|..
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98753322 223578888999999999999999883210 24567888888864
No 199
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.83 E-value=8.2e-06 Score=79.06 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=27.2
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999865
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.79 E-value=3.4e-06 Score=81.30 Aligned_cols=42 Identities=29% Similarity=0.247 Sum_probs=35.1
Q ss_pred EEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe
Q 044112 57 EARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100 (610)
Q Consensus 57 ~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~ 100 (610)
..++|++++|+|+||||||||++.|++.+++. .|+|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~--~~~v~~~~~d 59 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ--GISVCVFHMD 59 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCeEEEeccC
Confidence 35789999999999999999999999987654 6777776544
No 201
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.78 E-value=6.7e-06 Score=79.30 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=26.4
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999999998865
No 202
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.75 E-value=1.5e-05 Score=76.70 Aligned_cols=30 Identities=30% Similarity=0.327 Sum_probs=27.2
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-.+++|++++|+|+||||||||.+.|++.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 356789999999999999999999999975
No 203
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.71 E-value=1.1e-05 Score=75.62 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=33.9
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCeE---EEEcChhHH
Q 044112 189 HDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGTV---VHHGSLDLL 261 (610)
Q Consensus 189 ~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~i---v~~g~~~~~ 261 (610)
.+++++++ .+-.|......+.+.+++++++.|..++.+++.-...+.++++.+.-.-.++. .|.++.+++
T Consensus 111 ~~~piilv---~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~~ 183 (188)
T 2wjg_A 111 MGANLLLA---LNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTAEIKYPNFEPY 183 (188)
T ss_dssp TTCCEEEE---EECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC-------------
T ss_pred cCCCEEEE---EEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhccCccCCCHHHHHH
Confidence 45556555 35556554443333445555555667777776554457777777665555544 455555443
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.68 E-value=8e-05 Score=80.24 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=70.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHHHHHHHHHhcCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKETLMYSARLRLHV 139 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E~l~~~~~~~~~~ 139 (610)
++.+++++||+|+||||++..|++.+... .++|.+-+.+... ....|.+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D~~r-------------------~~a~eqL~--------- 145 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAADVYR-------------------PAAYDQLL--------- 145 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCSC-------------------HHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecCccc-------------------hhHHHHHH---------
Confidence 58899999999999999999999887543 4556554433210 01122222
Q ss_pred CHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEEeCCC-CC--CCHHHHHHHHHHHH
Q 044112 140 GLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLIDEPT-SG--LDSASALNVASLLK 216 (610)
Q Consensus 140 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llllDEPt-sg--LD~~~~~~i~~~L~ 216 (610)
.+-+..|+.-.... .+..--+-.+-+++.+...+++++++|+|- .+ .|+....++.++++
T Consensus 146 ----------~~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~ 208 (433)
T 3kl4_A 146 ----------QLGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208 (433)
T ss_dssp ----------HHHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHH
T ss_pred ----------HHHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHH
Confidence 12222333211100 011111112223444445689999999997 34 78877777777666
Q ss_pred HHHHhCCcEEEEEecC
Q 044112 217 YMAVKQGKTIVLTIHQ 232 (610)
Q Consensus 217 ~la~~~g~tvi~~~H~ 232 (610)
.+. .....+++..|.
T Consensus 209 ~~~-pd~vlLVlDa~~ 223 (433)
T 3kl4_A 209 VLK-PDDVILVIDASI 223 (433)
T ss_dssp HHC-CSEEEEEEEGGG
T ss_pred hhC-CcceEEEEeCcc
Confidence 553 334455555554
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.67 E-value=4.9e-05 Score=77.90 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=26.9
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346789999999999999999999999875
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=5.8e-06 Score=86.56 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=25.0
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
+++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999998753
No 207
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.59 E-value=0.00016 Score=76.01 Aligned_cols=35 Identities=31% Similarity=0.321 Sum_probs=28.7
Q ss_pred ccccee--EEEeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 50 ILKNVN--CEARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 50 iL~~vs--~~i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-|+.+- +-+++|+++.|.||+|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 45899999999999999999999888754
No 208
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.59 E-value=4e-05 Score=70.40 Aligned_cols=30 Identities=37% Similarity=0.658 Sum_probs=25.5
Q ss_pred cceeEEEeCceEEEEECCCCCcHHHHHHHHH
Q 044112 52 KNVNCEARPGEIMAIVGPSGAGKTTLLDILA 82 (610)
Q Consensus 52 ~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~ 82 (610)
++.++++.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4456666666 99999999999999999987
No 209
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.57 E-value=3.1e-06 Score=82.56 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=41.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCCC-CCceeEEEE--------CCEeCCh----hcccceEEEEccCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIPL-RRVSGSVLV--------NEQPMNI----TQFRRISGYVTQDE 117 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~~-~~~~G~I~~--------~g~~~~~----~~~~~~~~yv~Q~~ 117 (610)
+.+++|+|||||||||+.+.|++.+.. ...+|++.. +|.+++. ..+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 568999999999999999999986521 123687776 6666542 23556678888764
No 210
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.56 E-value=2.5e-05 Score=72.62 Aligned_cols=27 Identities=37% Similarity=0.501 Sum_probs=24.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999863
No 211
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.52 E-value=6.4e-05 Score=87.52 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=28.4
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
+.+++|+-++|.||||+|||||+++|++...
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3678999999999999999999999999864
No 212
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.52 E-value=0.00013 Score=79.13 Aligned_cols=180 Identities=13% Similarity=0.062 Sum_probs=90.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhccc-ceEEEEccCCCCCCCCCHHH
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFR-RISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~-~~~~yv~Q~~~l~~~lTv~E 127 (610)
.-|+.+.+-+++|+++.|.|++|+|||||.--++...... ...|.+-.-+.+..++. |..+.. ......
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~~~~~-------~~i~~~- 254 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLIVTA-------GSINAQ- 254 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHHHHHH-------SCCCHH-
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHHH-------cCCCHH-
Confidence 3566666678999999999999999999987777542111 11222222112111111 100000 001111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH--hCCC--EEEEeCCCC--
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV--HDPA--VLLIDEPTS-- 201 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~--llllDEPts-- 201 (610)
.+.-+ .-.+.. + ...++.+....+.-.+ -.+-+ ..++|-.+-+. .++.+. .+|+ ++++|--..
T Consensus 255 ~l~~g-~~~l~~--~-~~~~l~~a~~~l~~~~---l~i~d--~~~~s~~~i~~--~ir~l~~~~~~~~~lIVID~Lq~~~ 323 (444)
T 3bgw_A 255 KIKAA-RRDFAS--E-DWGKLSMAIGEISNSN---INIFD--KAGQSVNYIWS--KTRQTKRKNPGKRVIVMIDYLQLLE 323 (444)
T ss_dssp HHHHT-GGGTCC--S-CHHHHHHHHHHHHTSC---EEEEC--CSSCBHHHHHH--HHHHHHHHSCSSCEEEEEECSTTSB
T ss_pred HHhcc-cCCCCH--H-HHHHHHHHHHHHhcCC---EEEEC--CCCCCHHHHHH--HHHHHHHHhCCCCeEEEEecHHhcc
Confidence 11100 000110 1 1122333333331111 11110 12455555332 334443 3789 999996432
Q ss_pred --C--CC-HHHHHHHHHHHHHHHHhCCcEEEEEecCCcH------------------HHHHhcceEEEeeC
Q 044112 202 --G--LD-SASALNVASLLKYMAVKQGKTIVLTIHQPGF------------------RILELFDQILLLSK 249 (610)
Q Consensus 202 --g--LD-~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~------------------~i~~~~D~v~~L~~ 249 (610)
+ -+ .....++.+.|+.+|++.|.+||+++|-... .+.+.+|-|+.|..
T Consensus 324 ~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq~aD~Vi~L~r 394 (444)
T 3bgw_A 324 PAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYR 394 (444)
T ss_dssp CSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHHHCSEEEECCB
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHhhCCEEEEEec
Confidence 1 11 2234577888999999999999999983321 26677888888764
No 213
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.45 E-value=1.2e-05 Score=84.24 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=42.3
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~ 100 (610)
.+++++++..++|.+++|+|++|+|||||++.|++.+.+. .|+|.+-+.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~--~~~v~v~~~d 93 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE--GLKVAVIAVD 93 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEeec
Confidence 6889999999999999999999999999999999987543 5666655444
No 214
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.44 E-value=0.0006 Score=70.32 Aligned_cols=171 Identities=12% Similarity=0.070 Sum_probs=89.3
Q ss_pred ccccee-EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEE-ECCEeCChhcc-cceEEEEccCCCCCCCCCHH
Q 044112 50 ILKNVN-CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVL-VNEQPMNITQF-RRISGYVTQDEVLFPLLTVK 126 (610)
Q Consensus 50 iL~~vs-~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~-~~g~~~~~~~~-~~~~~yv~Q~~~l~~~lTv~ 126 (610)
-|+.+- +-+++|+++.|.||+|+|||||...++...... .|... .+|.. ..-. ...+.|+.-+..+ ...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~--~~~~~~~~~~~--~gg~~~~~v~yi~~e~~~----~~~ 157 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP--EFLFYDEEAVS--KGEVAQPKAVYIDTEGTF----RPE 157 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG--GGEECCTTTSC--TTTTSSEEEEEEESSSCC----CHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhcc--ccccccccccc--cCCCCCceEEEEECCCCC----CHH
Confidence 344433 578999999999999999999998887531110 11100 00100 0000 1345666554432 122
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHH-hhHHHHHHHHHh---CCCEEEEeCCCCC
Q 044112 127 ETLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGE-KRRVSIGVDLVH---DPAVLLIDEPTSG 202 (610)
Q Consensus 127 E~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGe-rqRv~ia~aL~~---~p~llllDEPtsg 202 (610)
+-.....++.. .. +++++.+-+. +..+..+ .+-+..++.++. +++++++|.-++=
T Consensus 158 ~l~~~~~~~g~--~~-------~~~~~~l~~~------------~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 216 (322)
T 2i1q_A 158 RIMQMAEHAGI--DG-------QTVLDNTFVA------------RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTST 216 (322)
T ss_dssp HHHHHHHHHTC--CH-------HHHHHTEEEE------------ECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHH
T ss_pred HHHHHHHHcCC--CH-------HHHhcCEEEE------------eCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHH
Confidence 22222222211 11 1122211110 1122222 233444555663 5899999998753
Q ss_pred CC--------HH----HHHHHHHHHHHHHHhCCcEEEEEecCCc---------------HHHHHhcceEEEeeC
Q 044112 203 LD--------SA----SALNVASLLKYMAVKQGKTIVLTIHQPG---------------FRILELFDQILLLSK 249 (610)
Q Consensus 203 LD--------~~----~~~~i~~~L~~la~~~g~tvi~~~H~~~---------------~~i~~~~D~v~~L~~ 249 (610)
.. .. ...++++.|++++++.+.+||++.|-.. ..+...+|.++.|++
T Consensus 217 ~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 217 FRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp HHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 21 11 2356677788888888999998877321 124456777777764
No 215
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.38 E-value=0.00095 Score=65.53 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=29.0
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCcEEEEEec
Q 044112 189 HDPAVLLIDEPTSGLDSASALNVASLLKYMAVK-QGKTIVLTIH 231 (610)
Q Consensus 189 ~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~-~g~tvi~~~H 231 (610)
.+|+++++..+.+.++......+..+++..... ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 368999999998888886655555554433221 1258888888
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.37 E-value=3.1e-05 Score=86.23 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=40.8
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCE
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ 99 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~ 99 (610)
.+++++++.+ +|+.++|+||||+|||||+++|++...+. .|+|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK--FVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE--EEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC--eEEEEeccc
Confidence 4678888888 89999999999999999999999998654 788877764
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.37 E-value=0.00014 Score=78.54 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=39.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCC----------CCceeEEEECCEeC---ChhcccceEEEEccCCCCCCCCCHHHHH
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPL----------RRVSGSVLVNEQPM---NITQFRRISGYVTQDEVLFPLLTVKETL 129 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~----------~~~~G~I~~~g~~~---~~~~~~~~~~yv~Q~~~l~~~lTv~E~l 129 (610)
-++|+|+||+|||||+|.|+|.... ++..|.+.++|+++ +..-.++..++.+|....+..+++.+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 7999999999999999999998531 13479999999864 2222333344444544444444444444
Q ss_pred HH
Q 044112 130 MY 131 (610)
Q Consensus 130 ~~ 131 (610)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 218
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.34 E-value=7.3e-06 Score=86.55 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=28.7
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCE
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQ 99 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~ 99 (610)
.+++++++.+ +|+|+||+|||||++.|.|..... .|.+..++.
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~--~~~~~~~~~ 73 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP--ERVIPGAAE 73 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------------
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC--CCcccCCCc
Confidence 6889999887 999999999999999998875432 444444443
No 219
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.29 E-value=4.9e-05 Score=79.82 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=33.8
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM 101 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~ 101 (610)
+++.+++|+|++|||||||+|.|+|...+. +|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~--~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER--GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc--CCeEEEEeecC
Confidence 468899999999999999999999987654 67777766554
No 220
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.25 E-value=0.00029 Score=67.23 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.-+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999765
No 221
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.23 E-value=0.00031 Score=65.26 Aligned_cols=27 Identities=41% Similarity=0.577 Sum_probs=23.5
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999874
No 222
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.21 E-value=0.0002 Score=69.19 Aligned_cols=30 Identities=37% Similarity=0.658 Sum_probs=25.2
Q ss_pred cceeEEEeCceEEEEECCCCCcHHHHHHHHH
Q 044112 52 KNVNCEARPGEIMAIVGPSGAGKTTLLDILA 82 (610)
Q Consensus 52 ~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~ 82 (610)
++.++.+.+| +++|+|||||||||++++|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3456666665 99999999999999999986
No 223
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.20 E-value=4.3e-05 Score=80.55 Aligned_cols=33 Identities=36% Similarity=0.441 Sum_probs=31.5
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999864
No 224
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.18 E-value=8.8e-05 Score=73.03 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=39.4
Q ss_pred CHHHhhHHHHHHHHHhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcce
Q 044112 174 SGGEKRRVSIGVDLVHDPAVLLIDEPTS-GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQ 243 (610)
Q Consensus 174 SgGerqRv~ia~aL~~~p~llllDEPts-gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~ 243 (610)
+.|...+.. ...+.+-+++++||.-. ++|.......++.+.+... .-+++++|---+...+.+++++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCCHHHHHHHcCC
Confidence 445555542 33578899999999976 7887776555555554332 2345555543333345555553
No 225
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.15 E-value=0.00071 Score=68.03 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.5
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+.++.-+.|.||+|+|||||.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999875
No 226
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.14 E-value=0.00021 Score=70.38 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=27.2
Q ss_pred cccceeEEEe---CceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 50 ILKNVNCEAR---PGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 50 iL~~vs~~i~---~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
=|.++|+++. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4777888877 999999999999999999999999875
No 227
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.06 E-value=0.00016 Score=68.98 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=31.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 68999999988886 689999999999999999874
No 228
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.06 E-value=0.0013 Score=81.29 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=26.6
Q ss_pred EEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 57 EARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 57 ~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999998753
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.05 E-value=0.0001 Score=71.25 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.4
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee--EEEECCE
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG--SVLVNEQ 99 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G--~I~~~g~ 99 (610)
..+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~--~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRD--RRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccc--cCCcEEEECCh
Confidence 345789999999999999999999999987533 56 7777654
No 230
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.0003 Score=65.88 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=30.5
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCcee--EEEECCEe
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSG--SVLVNEQP 100 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G--~I~~~g~~ 100 (610)
++|++++|+|++||||||+.+.|++.+++ .| .+.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChH
Confidence 47999999999999999999999997643 24 55555443
No 231
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.03 E-value=0.00055 Score=64.60 Aligned_cols=35 Identities=31% Similarity=0.433 Sum_probs=20.9
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.+++++|+..++. -++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999998888 5689999999999999999974
No 232
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.02 E-value=0.0041 Score=68.19 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=47.5
Q ss_pred HHHHHHHHH--hCCCEEEEeCCCCCC-------CH-HHHHHHHHHHHHHHHhCCcEEEEEecCCc---------------
Q 044112 180 RVSIGVDLV--HDPAVLLIDEPTSGL-------DS-ASALNVASLLKYMAVKQGKTIVLTIHQPG--------------- 234 (610)
Q Consensus 180 Rv~ia~aL~--~~p~llllDEPtsgL-------D~-~~~~~i~~~L~~la~~~g~tvi~~~H~~~--------------- 234 (610)
-++.++.++ .+|+++++|=-+. + +. ....++++.|+++|++.|.+||+++|-..
T Consensus 342 i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~l 420 (503)
T 1q57_A 342 LLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSI 420 (503)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCCS
T ss_pred HHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCCh
Confidence 334445554 3699999995432 2 21 23456888899999999999999988542
Q ss_pred ------HHHHHhcceEEEeeC
Q 044112 235 ------FRILELFDQILLLSK 249 (610)
Q Consensus 235 ------~~i~~~~D~v~~L~~ 249 (610)
..+.+.+|-|+.|..
T Consensus 421 ~dlr~s~~ie~~aD~vi~l~r 441 (503)
T 1q57_A 421 TDLRGSGALRQLSDTIIALER 441 (503)
T ss_dssp SSCSSSSHHHHHCSEEEEEEE
T ss_pred hhhccchHhhecCcEEEEEEe
Confidence 135677899988864
No 233
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.97 E-value=0.00092 Score=68.78 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=33.0
Q ss_pred HhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 188 VHDPAVLLIDEPTS-GLDSASALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 188 ~~~p~llllDEPts-gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
..+|++|++||+-. .-|...+..+...+..+.. .|+.+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 35799999999865 2344778888999988764 466777777654
No 234
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.96 E-value=0.0009 Score=68.05 Aligned_cols=26 Identities=35% Similarity=0.503 Sum_probs=23.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
..+.|.||+|+|||||.++|++....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 68999999999999999999997643
No 235
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.92 E-value=0.00038 Score=65.71 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=26.5
Q ss_pred ceeEEEeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 53 NVNCEARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 53 ~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999976
No 236
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.91 E-value=0.00038 Score=66.77 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=26.1
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998763
No 237
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.90 E-value=0.00053 Score=67.29 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=42.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcHHHHHhcceEEEee
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIH---------QPGFRILELFDQILLLS 248 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 248 (610)
+|+++++||--. |+. ++++.++.+++ .|.+||++-| .+..++..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 554 36667777776 4899999999 56677889999999875
No 238
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.88 E-value=0.0011 Score=60.72 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 239
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.88 E-value=0.00051 Score=66.61 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=23.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++..+.|.||+|+|||||++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998764
No 240
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.87 E-value=0.00023 Score=76.50 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=40.3
Q ss_pred cceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCC
Q 044112 52 KNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMN 102 (610)
Q Consensus 52 ~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~ 102 (610)
+++++. +|++++++|+||+||||++..|++.+.+. .|+|.+.+.+..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeecccc
Confidence 567777 89999999999999999999999998765 788888777653
No 241
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.82 E-value=0.0012 Score=69.50 Aligned_cols=31 Identities=29% Similarity=0.565 Sum_probs=27.5
Q ss_pred ccceeEEEeCceEEEEECCCCCcHHHHHHHHH
Q 044112 51 LKNVNCEARPGEIMAIVGPSGAGKTTLLDILA 82 (610)
Q Consensus 51 L~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~ 82 (610)
+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 46778888886 99999999999999999986
No 242
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.79 E-value=0.0042 Score=60.61 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=42.7
Q ss_pred HhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHH---------HHHhcceEEEee
Q 044112 188 VHDPAVLLIDEPTS----GLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFR---------ILELFDQILLLS 248 (610)
Q Consensus 188 ~~~p~llllDEPts----gLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~---------i~~~~D~v~~L~ 248 (610)
-.+|+++++|.-+. .-|.....+++..|++++++.|.++++++|..+.. +...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34788899885432 12455667888899999999999999999864321 234688887775
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.77 E-value=0.00035 Score=65.85 Aligned_cols=29 Identities=31% Similarity=0.504 Sum_probs=26.2
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
.+|.++.|.|++||||||+.+.|++.+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999988653
No 244
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.76 E-value=0.0068 Score=59.98 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
-++|+|++|+|||||+|.|.|...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999999753
No 245
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.75 E-value=0.00057 Score=65.22 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHC
Q 044112 63 IMAIVGPSGAGKTTLLDILAG 83 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g 83 (610)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 246
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.72 E-value=0.0056 Score=64.05 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.7
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999764
No 247
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.70 E-value=0.0043 Score=77.68 Aligned_cols=73 Identities=8% Similarity=0.008 Sum_probs=48.0
Q ss_pred HHHHHHHHH--hCCCEEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HHhCCcEEEEEecCCcH------
Q 044112 180 RVSIGVDLV--HDPAVLLIDEPTSGLD-S------------ASALNVASLLKYM---AVKQGKTIVLTIHQPGF------ 235 (610)
Q Consensus 180 Rv~ia~aL~--~~p~llllDEPtsgLD-~------------~~~~~i~~~L~~l---a~~~g~tvi~~~H~~~~------ 235 (610)
-+.+++.++ .+|+++++|.-++=.. + ..++.+.+.|+++ +++.|++||++.|--+.
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 345566554 4799999999876542 1 1233455555555 67889999999884211
Q ss_pred ---------HHHHhcceEEEeeCCeE
Q 044112 236 ---------RILELFDQILLLSKGTV 252 (610)
Q Consensus 236 ---------~i~~~~D~v~~L~~G~i 252 (610)
.+...+|-++.|++...
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEeccc
Confidence 36678899999876543
No 248
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.70 E-value=0.0013 Score=67.66 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=22.2
Q ss_pred EEEeCceEEEEECCCCCcHHHHH-HHHHC
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLL-DILAG 83 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL-~~L~g 83 (610)
+=+++| ++.|-||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 567899 9999999999999994 44444
No 249
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.70 E-value=0.00077 Score=70.35 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=24.0
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 457789999999999999999999765
No 250
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.69 E-value=0.00018 Score=73.81 Aligned_cols=47 Identities=23% Similarity=0.173 Sum_probs=38.0
Q ss_pred cc-eeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeC
Q 044112 52 KN-VNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPM 101 (610)
Q Consensus 52 ~~-vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~ 101 (610)
++ +++..+ |++++++|+||+||||++..|++.+.+. .|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCC
Confidence 35 777766 9999999999999999999999987654 56777766554
No 251
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.65 E-value=0.0031 Score=66.48 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=25.4
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
+-+++|+++.|.||+|+|||||...++..
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 36899999999999999999998777643
No 252
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.64 E-value=0.00026 Score=74.12 Aligned_cols=37 Identities=24% Similarity=0.422 Sum_probs=34.2
Q ss_pred ccccceeEEEeCceE--EEEECCCCCcHHHHHHHHHCCC
Q 044112 49 CILKNVNCEARPGEI--MAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~--~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++++++..+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 588899999999999 9999999999999999999875
No 253
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.62 E-value=0.0009 Score=71.15 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=33.6
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCCC---------CCCceeEEEECCE
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMIP---------LRRVSGSVLVNEQ 99 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~---------~~~~~G~I~~~g~ 99 (610)
-..+..|..++|+|+||+|||||+|.|+|... ..+..|.+.++|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 44567888999999999999999999999721 1134788887764
No 254
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.58 E-value=0.00078 Score=63.45 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=29.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCCCC-CceeEEEECCEe
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMIPLR-RVSGSVLVNEQP 100 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~~~~-~~~G~I~~~g~~ 100 (610)
.+++|.|+||||||||++.|.+.++.. ..-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 589999999999999999999875322 124777776544
No 255
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.56 E-value=0.00059 Score=67.92 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=35.6
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEe
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQP 100 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~ 100 (610)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~ 67 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDS 67 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHH
Confidence 455555 567889999999999999999999998763 2456666643
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.53 E-value=0.0064 Score=75.25 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=83.9
Q ss_pred ccccee--EEEeCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECCEeCChhcccceEEEEccCCCCCCCCCHHH
Q 044112 50 ILKNVN--CEARPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNEQPMNITQFRRISGYVTQDEVLFPLLTVKE 127 (610)
Q Consensus 50 iL~~vs--~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g~~~~~~~~~~~~~yv~Q~~~l~~~lTv~E 127 (610)
-|+.+- +=+++|+++.|.||+|+|||||.-.++..... .| ..+.|+.-+...-+
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G---------------~~vlyis~E~s~~~------ 425 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EG---------------KTCAFIDAEHALDP------ 425 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH---TT---------------CCEEEECTTSCCCH------
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hC---------------CCeEEEEccCchHH------
Confidence 456554 36899999999999999999998777653211 01 12445544332111
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHH--hCCCEEEEeCCCCCCCH
Q 044112 128 TLMYSARLRLHVGLNRAKARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLV--HDPAVLLIDEPTSGLDS 205 (610)
Q Consensus 128 ~l~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~--~~p~llllDEPtsgLD~ 205 (610)
+ .+.+ +|+.. .+-.+- ..-++.| -+.+++.++ .+|+++++|..++=...
T Consensus 426 -~-~a~~--------------------lGvd~-~~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~ 476 (1706)
T 3cmw_A 426 -I-YARK--------------------LGVDI-DNLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPK 476 (1706)
T ss_dssp -H-HHHH--------------------TTCCG-GGCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred -H-HHHH--------------------cCCCH-HHeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhcc
Confidence 0 0111 22210 000010 0112332 234455554 47999999999876541
Q ss_pred -------------HHHHHHHHHH---HHHHHhCCcEEEEEecCCc---------------HHHHHhcceEEEeeCCe
Q 044112 206 -------------ASALNVASLL---KYMAVKQGKTIVLTIHQPG---------------FRILELFDQILLLSKGT 251 (610)
Q Consensus 206 -------------~~~~~i~~~L---~~la~~~g~tvi~~~H~~~---------------~~i~~~~D~v~~L~~G~ 251 (610)
...+.+.+.+ +.++++.|.+||++.|.-. ..+...+|-++.+.+.+
T Consensus 477 ~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 477 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecc
Confidence 1223334444 4446778999999988421 24667899888877644
No 257
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.0014 Score=61.43 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=23.1
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999854
No 258
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.48 E-value=0.007 Score=59.63 Aligned_cols=27 Identities=30% Similarity=0.423 Sum_probs=22.8
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++..-+.|.||+|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999999754
No 259
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.027 Score=58.02 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.3
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
..+..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566778999999999999999999865
No 260
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.47 E-value=0.001 Score=63.39 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 261
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.0004 Score=72.15 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=35.5
Q ss_pred ccccceeEEEeCceE--EEEECCCCCcHHHHHHHHHCCCCC
Q 044112 49 CILKNVNCEARPGEI--MAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~--~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 688899999999999 999999999999999999998643
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.35 E-value=0.0018 Score=59.48 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999764
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.33 E-value=0.0021 Score=59.70 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=23.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998763
No 264
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.29 E-value=0.0043 Score=64.00 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEEeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 56 CEARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 56 ~~i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
+-+.+|.++.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 67899999999999999999999999753
No 265
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.28 E-value=0.0019 Score=63.40 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.2
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999975
No 266
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.25 E-value=0.0019 Score=60.31 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
No 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.25 E-value=0.0015 Score=64.69 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=25.0
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
.+++++...++| +.|.||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555656666 88999999999999999998753
No 268
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.13 E-value=0.0029 Score=59.15 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=22.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 269
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.10 E-value=0.0029 Score=62.44 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999653
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.10 E-value=0.0027 Score=59.56 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.7
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998643
No 271
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.08 E-value=0.0037 Score=61.21 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCcEEEEEec
Q 044112 183 IGVDLVHDPAVLLIDEPTSG-LDSASALNVASLLKYMAVKQGKTIVLTIH 231 (610)
Q Consensus 183 ia~aL~~~p~llllDEPtsg-LD~~~~~~i~~~L~~la~~~g~tvi~~~H 231 (610)
+..++..+|+++++|||-.- .+........+.+...- +.|..|+.++|
T Consensus 77 l~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l-~sgidVitT~N 125 (228)
T 2r8r_A 77 LDALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELL-AAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHH-HTTCEEEEEEE
T ss_pred HHHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHH-cCCCCEEEEcc
Confidence 44445579999999997642 33222222333333333 35889999998
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.00 E-value=0.0031 Score=62.79 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 378999999999999999999764
No 273
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.92 E-value=0.0043 Score=59.78 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=22.0
Q ss_pred CceEEEEECCCCCcHHHHHHHHHC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAG 83 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g 83 (610)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 274
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.89 E-value=0.0041 Score=56.85 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 044112 63 IMAIVGPSGAGKTTLLDIL 81 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L 81 (610)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.87 E-value=0.004 Score=59.22 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36799999999999999997654
No 276
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.85 E-value=0.0045 Score=57.77 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36689999999999999999998653
No 277
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.83 E-value=0.0051 Score=58.44 Aligned_cols=27 Identities=30% Similarity=0.521 Sum_probs=24.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999998654
No 278
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.81 E-value=0.0049 Score=58.37 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=24.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.81 E-value=0.0047 Score=58.31 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999864
No 280
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.79 E-value=0.0043 Score=57.79 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.+..+.|.|++||||||+.+.|+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 281
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.74 E-value=0.0091 Score=55.79 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999876654
No 282
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.73 E-value=0.0057 Score=56.48 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAG 83 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g 83 (610)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999997
No 283
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.68 E-value=0.0055 Score=58.39 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.9
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998653
No 284
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.68 E-value=0.0089 Score=65.39 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=23.8
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3555668999999999999999998764
No 285
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.67 E-value=0.0053 Score=62.33 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=28.6
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCCCCceeEEEECC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPLRRVSGSVLVNE 98 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~~~~~G~I~~~g 98 (610)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 4578999999999999999999987642 24566654
No 286
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.66 E-value=0.0055 Score=56.85 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999764
No 287
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.63 E-value=0.012 Score=56.14 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=40.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcHHHHHhcceEEEee
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIH---------QPGFRILELFDQILLLS 248 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 248 (610)
+.+++++||--- +|+. .++.+++++.. |+.||++-+ .+..++..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999543 5543 36677887764 899999999 55567889999998775
No 288
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.61 E-value=0.0051 Score=61.66 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=30.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceE
Q 044112 199 PTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQI 244 (610)
Q Consensus 199 PtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v 244 (610)
|||+++.....++.+.+.+..++.+.+..+..|..+ ++.+.++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHH
Confidence 899998888888888888876554544455556554 455555554
No 289
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.59 E-value=0.006 Score=57.63 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 290
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.58 E-value=0.0059 Score=57.34 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.6
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998653
No 291
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.56 E-value=0.003 Score=60.33 Aligned_cols=24 Identities=46% Similarity=0.746 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 292
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.53 E-value=0.0064 Score=57.97 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.2
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999653
No 293
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.52 E-value=0.0077 Score=56.27 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.7
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
++.+++|.|++||||||+.+.|+..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999864
No 294
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.46 E-value=0.021 Score=71.58 Aligned_cols=36 Identities=31% Similarity=0.304 Sum_probs=30.9
Q ss_pred cccceeE--EEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 50 ILKNVNC--EARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 50 iL~~vs~--~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-|+.+-+ -+++|+++.|-|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566664 79999999999999999999999988754
No 295
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.46 E-value=0.007 Score=56.61 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
.+++|.|++|||||||++.|+..++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 3789999999999999999998653
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.45 E-value=0.007 Score=56.46 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998764
No 297
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.43 E-value=0.0026 Score=60.00 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=23.7
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999998753
No 298
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.32 E-value=0.0089 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
No 299
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.32 E-value=0.0075 Score=56.29 Aligned_cols=24 Identities=38% Similarity=0.594 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999999864
No 300
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.30 E-value=0.0091 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999853
No 301
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.30 E-value=0.012 Score=61.83 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=28.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCC---------CCCceeEEEECC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIP---------LRRVSGSVLVNE 98 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~---------~~~~~G~I~~~g 98 (610)
|--++|+|.+|+|||||+|.|+|... .++..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34589999999999999999998431 113467777766
No 302
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.27 E-value=0.008 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
No 303
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.27 E-value=0.053 Score=56.54 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.0
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999864
No 304
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.26 E-value=0.01 Score=57.26 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=23.1
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++|..+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998753
No 305
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.23 E-value=0.0074 Score=54.60 Aligned_cols=22 Identities=32% Similarity=0.688 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q 044112 64 MAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999998864
No 306
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.19 E-value=0.01 Score=55.67 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999765
No 307
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.19 E-value=0.009 Score=53.72 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
No 308
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.18 E-value=0.01 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.730 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q 044112 64 MAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998764
No 309
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.16 E-value=0.0092 Score=53.55 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 310
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.16 E-value=0.0094 Score=56.47 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999854
No 311
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.14 E-value=0.0076 Score=55.96 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=18.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.13 E-value=0.0093 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999754
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.11 E-value=0.0087 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998764
No 314
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.11 E-value=0.01 Score=59.72 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++|+|++|+|||||+|.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 315
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.10 E-value=0.062 Score=52.05 Aligned_cols=53 Identities=15% Similarity=0.292 Sum_probs=42.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEec---------CCcHHHHHhcceEEEee
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIH---------QPGFRILELFDQILLLS 248 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H---------~~~~~i~~~~D~v~~L~ 248 (610)
+.+++++||--- +|.. .++.+++++.+ |+.||++-+ .+..++..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6543 34777777654 899999999 77778899999999875
No 316
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.08 E-value=0.0098 Score=54.43 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 317
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.06 E-value=0.01 Score=53.70 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999875
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.06 E-value=0.011 Score=57.33 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.4
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 346789999999999999999998653
No 319
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.06 E-value=0.0088 Score=55.61 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999876
No 320
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.05 E-value=0.01 Score=53.77 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999763
No 321
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.01 Score=53.55 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q 044112 64 MAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 322
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.02 E-value=0.1 Score=54.93 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.6
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++.-+.|.||+|+|||+|.+.|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 346789999999999999999998764
No 323
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.00 E-value=0.011 Score=54.10 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 324
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.00 E-value=0.0066 Score=64.21 Aligned_cols=45 Identities=16% Similarity=0.128 Sum_probs=36.5
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCcEEEEEecCCcH
Q 044112 190 DPAVLLIDEPTSGLD---SASALNVASLLKYMAVKQGKTIVLTIHQPGF 235 (610)
Q Consensus 190 ~p~llllDEPtsgLD---~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~ 235 (610)
.|.++++||-=.=++ +..+..+.+.+++.. +.|..++++||.|+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~R-k~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIR-KYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGG-GGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhh-hhCeEEEEEcCCHHH
Confidence 578999999877774 667777888888764 578999999999873
No 325
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.00 E-value=0.01 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 326
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.99 E-value=0.011 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998753
No 327
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.99 E-value=0.0098 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q 044112 64 MAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999764
No 328
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.99 E-value=0.016 Score=59.52 Aligned_cols=35 Identities=29% Similarity=0.228 Sum_probs=31.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
..+++....+ .|.-++|.|+||+|||||...|.++
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5788887777 7999999999999999999999875
No 329
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.98 E-value=0.014 Score=55.38 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35589999999999999999998653
No 330
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.96 E-value=0.011 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.93 E-value=0.013 Score=56.04 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.++|.||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 332
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.91 E-value=0.014 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 333
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.90 E-value=0.016 Score=53.01 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3468999999999999999999853
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.89 E-value=0.011 Score=54.77 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999999874
No 335
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.89 E-value=0.012 Score=54.55 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q 044112 64 MAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 336
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.87 E-value=0.011 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998763
No 337
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.86 E-value=0.015 Score=53.33 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998753
No 338
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.86 E-value=0.016 Score=57.74 Aligned_cols=27 Identities=26% Similarity=0.402 Sum_probs=23.1
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++.++.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998753
No 339
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.84 E-value=0.015 Score=55.05 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
..+++|.|++||||||+.+.|+..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999865
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.84 E-value=0.014 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37899999999999999999754
No 341
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.83 E-value=0.013 Score=53.84 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 342
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.83 E-value=0.013 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999764
No 343
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.82 E-value=0.013 Score=52.93 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999999753
No 344
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.80 E-value=0.013 Score=54.56 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38899999999999999999864
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.79 E-value=0.012 Score=56.80 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998653
No 346
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.77 E-value=0.013 Score=53.06 Aligned_cols=23 Identities=43% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999997643
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.74 E-value=0.016 Score=55.57 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++|.||+||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998653
No 348
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.74 E-value=0.017 Score=52.79 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 349
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.74 E-value=0.055 Score=48.47 Aligned_cols=42 Identities=5% Similarity=0.104 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
+..++++||.- .|+...+..+.+.+.+.. ..+..+|+++..+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 35689999965 678888888888887653 2345677766644
No 350
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.73 E-value=0.31 Score=52.33 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=24.1
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
++.+++++|++|+||||+...|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999997654
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.73 E-value=0.016 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
..+++|.|++||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.72 E-value=0.014 Score=54.53 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 353
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.72 E-value=0.014 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.71 E-value=0.014 Score=52.55 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHCC
Q 044112 64 MAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g~ 84 (610)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999864
No 355
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.69 E-value=0.014 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998753
No 356
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.69 E-value=0.0091 Score=55.01 Aligned_cols=23 Identities=43% Similarity=0.444 Sum_probs=20.2
Q ss_pred ceEEEEECCCCCcHHHHHHHHHC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAG 83 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g 83 (610)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999875
No 357
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.64 E-value=0.017 Score=59.00 Aligned_cols=26 Identities=46% Similarity=0.700 Sum_probs=22.7
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 445 58999999999999999999864
No 358
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.63 E-value=0.019 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=22.5
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
++-.++|.||+||||||+.+.|+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678999999999999999999854
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.61 E-value=0.017 Score=53.61 Aligned_cols=25 Identities=32% Similarity=0.428 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
-++|+|++|+|||||++.+.|....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 3689999999999999999987643
No 360
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.015 Score=53.18 Aligned_cols=23 Identities=39% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998764
No 361
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.59 E-value=0.014 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 362
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.59 E-value=0.016 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999999754
No 363
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.58 E-value=0.03 Score=53.68 Aligned_cols=36 Identities=25% Similarity=0.139 Sum_probs=29.6
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
..++..-.. ..|..++|+||+|+|||||...|+.+.
T Consensus 23 ~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 466665555 468899999999999999999999763
No 364
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.57 E-value=0.016 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999764
No 365
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.53 E-value=0.016 Score=53.81 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++++|++|+|||||++.|++..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999999764
No 366
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.51 E-value=0.017 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999764
No 367
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.50 E-value=0.015 Score=58.36 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHHCCC
Q 044112 64 MAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8899999999999999998764
No 368
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.49 E-value=0.019 Score=58.71 Aligned_cols=23 Identities=48% Similarity=0.660 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999964
No 369
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.49 E-value=0.017 Score=57.56 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++|+|++|+|||||+|.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999973
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.44 E-value=0.017 Score=55.09 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.44 E-value=0.02 Score=56.55 Aligned_cols=24 Identities=13% Similarity=0.422 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998854
No 372
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.43 E-value=0.018 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.8
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.=-++|+|++|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999764
No 373
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.41 E-value=0.018 Score=54.13 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 374
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.41 E-value=0.018 Score=54.21 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 375
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.41 E-value=0.022 Score=54.30 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=21.6
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
..+++|.|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999864
No 376
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.40 E-value=0.016 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 377
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.40 E-value=0.015 Score=54.94 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5799999999999999999764
No 378
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.38 E-value=0.018 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999764
No 379
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.36 E-value=0.019 Score=56.76 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 380
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.33 E-value=0.019 Score=53.43 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999999754
No 381
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.32 E-value=0.018 Score=53.81 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 48999999999999999998753
No 382
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.31 E-value=0.022 Score=53.52 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999864
No 383
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.30 E-value=0.018 Score=60.63 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHCC
Q 044112 64 MAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 64 ~ailG~nGaGKSTLL~~L~g~ 84 (610)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
No 384
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.29 E-value=0.018 Score=53.42 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999764
No 385
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.018 Score=53.79 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999998764
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.26 E-value=0.02 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999999763
No 387
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.26 E-value=0.023 Score=56.67 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999863
No 388
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.23 E-value=0.021 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 389
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.23 E-value=0.022 Score=53.52 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
-++|+|++|+|||||++.+.+...+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4789999999999999999996543
No 390
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.22 E-value=0.027 Score=51.72 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.2
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999998764
No 391
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.22 E-value=0.021 Score=53.77 Aligned_cols=22 Identities=41% Similarity=0.812 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999973
No 392
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.20 E-value=0.025 Score=54.79 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 393
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.19 E-value=0.021 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
No 394
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.17 E-value=0.022 Score=52.98 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 395
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.16 E-value=0.021 Score=58.00 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++|+|+.|||||||+|.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999974
No 396
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.15 E-value=0.022 Score=57.20 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||+|.|+|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999874
No 397
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.13 E-value=0.024 Score=52.67 Aligned_cols=22 Identities=41% Similarity=0.425 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999965
No 398
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.12 E-value=0.021 Score=55.90 Aligned_cols=28 Identities=32% Similarity=0.501 Sum_probs=21.8
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
..+|.++.+.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999998765
No 399
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.11 E-value=0.024 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999998753
No 400
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.10 E-value=0.02 Score=53.91 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57899999999999999999864
No 401
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.10 E-value=0.025 Score=54.44 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.0
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
|-.+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998753
No 402
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.09 E-value=0.022 Score=54.44 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998753
No 403
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.08 E-value=0.031 Score=54.12 Aligned_cols=28 Identities=39% Similarity=0.573 Sum_probs=24.5
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
-+|.++.+.|++||||||+.+.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999987654
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.07 E-value=0.024 Score=57.16 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.9
Q ss_pred ceEEEEECCCCCcHHHHHHHHHC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAG 83 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g 83 (610)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 405
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.07 E-value=0.023 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 406
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.06 E-value=0.024 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 407
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.06 E-value=0.014 Score=59.41 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=19.2
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
++-+++|.||+||||||+.+.|+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999874
No 408
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.05 E-value=0.022 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999854
No 409
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.05 E-value=0.018 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 410
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.04 E-value=0.024 Score=54.76 Aligned_cols=22 Identities=18% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 411
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.04 E-value=0.03 Score=54.50 Aligned_cols=28 Identities=21% Similarity=0.382 Sum_probs=23.7
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++..++.|+||+||||+|.-+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998653
No 412
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.03 E-value=0.024 Score=52.82 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
No 413
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.02 E-value=0.013 Score=56.07 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999874
No 414
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.022 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 415
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.01 E-value=0.028 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
-++|+|++|+|||||++.+.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 378999999999999999998643
No 416
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.01 E-value=0.022 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 417
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.00 E-value=0.022 Score=52.62 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999863
No 418
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.99 E-value=0.024 Score=52.54 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999998764
No 419
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.99 E-value=0.025 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999864
No 420
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.025 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998763
No 421
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.97 E-value=0.025 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999764
No 422
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.94 E-value=0.025 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 423
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.92 E-value=0.026 Score=53.11 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998764
No 424
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.91 E-value=0.23 Score=48.67 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=43.7
Q ss_pred HhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC---------CcHHHHHhcceEEEee
Q 044112 188 VHDPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQ---------PGFRILELFDQILLLS 248 (610)
Q Consensus 188 ~~~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~---------~~~~i~~~~D~v~~L~ 248 (610)
+.+.+++++||----.| +.+.++.+++ .|+.||++-++ +..++..++|.|.-|+
T Consensus 88 ~~~~dvViIDEaQF~~~------v~el~~~l~~-~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 88 ALGVAVIGIDEGQFFPD------IVEFCEAMAN-AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp HTTCSEEEESSGGGCTT------HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred hccCCEEEEEchhhhhh------HHHHHHHHHh-CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 36789999999876644 5666666654 68999999999 8888999999999875
No 425
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.89 E-value=0.032 Score=56.36 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.++.|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999873
No 426
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.89 E-value=0.024 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999988653
No 427
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.85 E-value=0.039 Score=57.23 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=23.9
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++.++.|+||.|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56799999999999999999999875
No 428
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.84 E-value=0.025 Score=56.86 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999975
No 429
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.84 E-value=0.031 Score=52.37 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999754
No 430
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.83 E-value=0.021 Score=52.28 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++++|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.81 E-value=0.03 Score=53.67 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999999999864
No 432
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.80 E-value=0.0099 Score=56.81 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=31.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
+|.++++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~--~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEP--PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSC--CTTEEEEEEESCGG
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcC--CCceEEEEEeCChH
Confidence 578999999765 7888777777777543 23677888888764
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.78 E-value=0.035 Score=54.01 Aligned_cols=26 Identities=38% Similarity=0.501 Sum_probs=22.6
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998653
No 434
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.75 E-value=0.026 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999864
No 435
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.74 E-value=0.031 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 436
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.72 E-value=0.03 Score=52.20 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47899999999999999998653
No 437
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.66 E-value=0.035 Score=54.68 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=24.4
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
+|.+++|.|++||||||+.+.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
No 438
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.64 E-value=0.028 Score=53.58 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 439
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.64 E-value=0.021 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=9.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998653
No 440
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.60 E-value=0.031 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 441
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.58 E-value=0.029 Score=52.63 Aligned_cols=22 Identities=41% Similarity=0.378 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999764
No 442
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.56 E-value=0.034 Score=59.45 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.8
Q ss_pred EeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 58 ARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 58 i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-.+.+++.|+|++||||||+.+.|+..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 346789999999999999999999864
No 443
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.53 E-value=0.038 Score=55.23 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
..++++|.+|+|||||+|.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 4789999999999999999999764
No 444
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.50 E-value=0.034 Score=51.03 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.1
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998765
No 445
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.50 E-value=0.039 Score=53.14 Aligned_cols=22 Identities=41% Similarity=0.812 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999975
No 446
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.50 E-value=0.035 Score=55.21 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999865
No 447
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.47 E-value=0.031 Score=52.70 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999754
No 448
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.46 E-value=0.041 Score=59.57 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=29.2
Q ss_pred cccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 50 ILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 50 iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++.+ ..+-+|+..+|+||||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 45555 556789999999999999999999998754
No 449
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.43 E-value=0.039 Score=57.27 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+++|.||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 489999999999999999999865
No 450
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.38 E-value=0.041 Score=53.41 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=25.9
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIPL 87 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~~ 87 (610)
.+|.++.+.|++||||||+.+.|+..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999987753
No 451
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.36 E-value=0.043 Score=53.11 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=24.3
Q ss_pred CceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 60 PGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 60 ~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
+|.++.+-|++||||||+.+.|+..+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987764
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.34 E-value=0.037 Score=55.20 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 453
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.33 E-value=0.049 Score=53.16 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.8
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987653
No 454
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.32 E-value=0.064 Score=50.22 Aligned_cols=35 Identities=17% Similarity=-0.014 Sum_probs=27.4
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
..++..-.. -.|.-++|.|+||+|||||...|..+
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 445554444 56889999999999999999988764
No 455
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.32 E-value=0.049 Score=55.92 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=22.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999765
No 456
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.29 E-value=0.046 Score=53.40 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.4
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
|.+++|-|+.||||||+.+.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999998763
No 457
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.27 E-value=0.036 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
No 458
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.26 E-value=0.047 Score=52.58 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999653
No 459
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.17 E-value=0.031 Score=55.53 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=24.1
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999999875
No 460
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.17 E-value=0.042 Score=52.56 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999864
No 461
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.14 E-value=0.02 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998653
No 462
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.06 E-value=0.043 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 463
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.06 E-value=0.1 Score=61.00 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
.-+.|.||+|+|||+|.+.|+....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998753
No 464
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.00 E-value=0.041 Score=51.96 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998753
No 465
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.00 E-value=0.029 Score=52.05 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999654
No 466
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.97 E-value=0.021 Score=53.57 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999876
No 467
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.96 E-value=0.044 Score=52.53 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-.++|+|++|+|||||++-+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998653
No 468
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.95 E-value=0.055 Score=55.78 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHCCC
Q 044112 62 EIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 62 e~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++.|+||+|||||||-+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999875
No 469
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.85 E-value=0.02 Score=58.97 Aligned_cols=42 Identities=7% Similarity=0.140 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
+++++++|| ...|++.....+.+.+++.. ....+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~--~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS--GVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC--CCceEEEEeCchh
Confidence 567999999 78899998888888888753 2445667776664
No 470
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.77 E-value=0.017 Score=57.26 Aligned_cols=29 Identities=38% Similarity=0.648 Sum_probs=23.1
Q ss_pred eEEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 55 NCEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 55 s~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
....+.| +.|.||+|+|||||.++|++..
T Consensus 40 ~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 40 GAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 3344445 7799999999999999999853
No 471
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.71 E-value=0.047 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 472
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.63 E-value=0.053 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 473
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.63 E-value=0.049 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.+.+..
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 474
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.58 E-value=0.047 Score=59.01 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=33.7
Q ss_pred HHhhHHHHHHHHHhCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 176 GEKRRVSIGVDLVHDPAVLLIDEPT-SGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 176 GerqRv~ia~aL~~~p~llllDEPt-sgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
.|.+....+...+.+++++++.... .|+.... ..+.+.|++ .++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~----~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR----TKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT----CCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH----cCCCEEEEEECcc
Confidence 3666667777778888876555444 4565543 456666543 4677877777654
No 475
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.45 E-value=0.076 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.3
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4589999999999999999999764
No 476
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.44 E-value=0.07 Score=50.21 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=37.2
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc---------HHHHHhcceEEEee
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG---------FRILELFDQILLLS 248 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~---------~~i~~~~D~v~~L~ 248 (610)
+++++++||-=. +|+ .+++.|++++++ |..|+++-++.+ ..+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~-~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDR-GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHT-TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHC-CCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999643 443 366777777765 889999888443 34556688776654
No 477
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.14 E-value=0.077 Score=56.30 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-.+++|+||+|||||||.+.|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999764
No 478
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.14 E-value=0.13 Score=55.12 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++|+|.+++|||||+|.|+|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 479
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.04 E-value=0.084 Score=47.33 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCC
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQP 233 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~ 233 (610)
+..+|++||.- .|++..+..+.+.|+.. ..+..+|+++..+
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 44689999984 68888888888888442 2345677777654
No 480
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.00 E-value=0.026 Score=65.53 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=28.8
Q ss_pred eeEEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 54 VNCEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 54 vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.++.+.+|+.++|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 35667899999999999999999999999875
No 481
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.093 Score=55.28 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHHCCCCC---------CCceeEEEECCEeC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMIPL---------RRVSGSVLVNEQPM 101 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~~~---------~~~~G~I~~~g~~~ 101 (610)
-+||+|.+-+|||||+|.|+|.... ++..|.+.++|..+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 5899999999999999999996421 13568888887654
No 482
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=91.81 E-value=0.076 Score=56.38 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCcccccccccCCCCCccCHHHhhHHHHHHHHHhCCCEEEE---eCCCCCCCHHHHHHHHHHHHHHHHhC
Q 044112 146 ARVSELLKELGLEHVANVRIGGESSRGISGGEKRRVSIGVDLVHDPAVLLI---DEPTSGLDSASALNVASLLKYMAVKQ 222 (610)
Q Consensus 146 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSgGerqRv~ia~aL~~~p~llll---DEPtsgLD~~~~~~i~~~L~~la~~~ 222 (610)
+.++++++.++.... . ..+|.+|.+++.-...+...|-++++ |.+ + ...+.++.+.+ .+.
T Consensus 180 ~~~~~~l~~l~~~~~----~-----~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~------~~~l~~l~~~~-~~~ 242 (397)
T 1wxq_A 180 NDVWEAMHKLNLPED----P-----TKWSQDDLLAFASEIRRVNKPMVIAANKADAA-S------DEQIKRLVREE-EKR 242 (397)
T ss_dssp HHHHHHHHHTTCCSC----G-----GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C------HHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHhccCCc----c-----ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c------hHHHHHHHHHH-hhc
Confidence 346677777776543 1 36899998888777777779998887 444 1 12232332333 223
Q ss_pred CcEEEEEecCCcHHHHHhcc
Q 044112 223 GKTIVLTIHQPGFRILELFD 242 (610)
Q Consensus 223 g~tvi~~~H~~~~~i~~~~D 242 (610)
+..+|.++-..+.++.++.+
T Consensus 243 ~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 243 GYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp TCEEEEECHHHHHHHHSCSS
T ss_pred CCcEEEEeccchhhHHHHHh
Confidence 55666666444444444333
No 483
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.75 E-value=0.089 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-+||+|++||||||+.+.|+..+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999998653
No 484
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=91.71 E-value=0.09 Score=49.34 Aligned_cols=42 Identities=10% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecCCc
Q 044112 190 DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQPG 234 (610)
Q Consensus 190 ~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~ 234 (610)
++.++++||. ..++......+.+.+.+. ..+..+|+++..+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~--~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMY--SKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhc--CCCCeEEEEeCChh
Confidence 6789999995 457777777777777663 23566777776653
No 485
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.69 E-value=0.097 Score=52.83 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=22.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
+-.++++|.+|+|||||+|.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34689999999999999999999753
No 486
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.65 E-value=0.22 Score=54.06 Aligned_cols=71 Identities=18% Similarity=0.239 Sum_probs=52.7
Q ss_pred CCccCHHHhhHHHHHH--HHHh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCcEEEEEecC
Q 044112 170 SRGISGGEKRRVSIGV--DLVH---------------DPAVLLIDEPTSGLDSASALNVASLLKYMAVKQGKTIVLTIHQ 232 (610)
Q Consensus 170 ~~~LSgGerqRv~ia~--aL~~---------------~p~llllDEPtsgLD~~~~~~i~~~L~~la~~~g~tvi~~~H~ 232 (610)
.++.||||+|-.-+|. +++. .-+++++||. +-+|...+...+++++++ |--+|+++=.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 4689999999744443 3333 1247999999 999999999999999865 5666666643
Q ss_pred CcHHHHHhcceEEEee
Q 044112 233 PGFRILELFDQILLLS 248 (610)
Q Consensus 233 ~~~~i~~~~D~v~~L~ 248 (610)
.+....|.++.+-
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 3567788888774
No 487
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.63 E-value=0.093 Score=54.68 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.4
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+..-.++|+|++|+|||||++.|++.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998764
No 488
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=91.51 E-value=0.06 Score=56.06 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999974
No 489
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=90.81 E-value=0.035 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 5789999999999999988754
No 490
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.48 E-value=0.098 Score=52.72 Aligned_cols=27 Identities=37% Similarity=0.589 Sum_probs=23.3
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 455679999999999999999998765
No 491
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.39 E-value=0.13 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.5
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+--++|+|++|+|||||++.+.+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3457899999999999999988763
No 492
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.35 E-value=0.38 Score=55.22 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999875
No 493
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.34 E-value=0.08 Score=56.78 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999885
No 494
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=91.33 E-value=0.17 Score=48.32 Aligned_cols=72 Identities=21% Similarity=0.105 Sum_probs=53.9
Q ss_pred hhHHHHHHHHH--hCCCEEEEeCCCCC--CCHHHHHHHHHHHHHHHHhCCcEEEEEecCCcHHHHHhcceEEEeeCCe
Q 044112 178 KRRVSIGVDLV--HDPAVLLIDEPTSG--LDSASALNVASLLKYMAVKQGKTIVLTIHQPGFRILELFDQILLLSKGT 251 (610)
Q Consensus 178 rqRv~ia~aL~--~~p~llllDEPtsg--LD~~~~~~i~~~L~~la~~~g~tvi~~~H~~~~~i~~~~D~v~~L~~G~ 251 (610)
++.+.-++..+ .+.++++|||.+.. ++-....++++.|.+- -.+..||+|...+..++.+++|-|.-|..-+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~vk 181 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRPVK 181 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCCSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeeccee
Confidence 34455566666 45799999999762 3444455688888753 3468999999999999999999999997643
No 495
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.19 E-value=0.12 Score=51.35 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.9
Q ss_pred eCceEEEEECCCCCcHHHHHHHHHCC
Q 044112 59 RPGEIMAIVGPSGAGKTTLLDILAGM 84 (610)
Q Consensus 59 ~~Ge~~ailG~nGaGKSTLL~~L~g~ 84 (610)
.+..-+.|.||+|+|||||.+.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567889999999999999999975
No 496
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.03 E-value=0.13 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.7
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999754
No 497
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=91.02 E-value=0.024 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHCCC
Q 044112 63 IMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
-++|+|++|+|||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 498
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.97 E-value=0.07 Score=50.96 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHCC
Q 044112 63 IMAIVGPSGAGKTTLLDI-LAGM 84 (610)
Q Consensus 63 ~~ailG~nGaGKSTLL~~-L~g~ 84 (610)
-++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5554
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.92 E-value=0.14 Score=49.01 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=23.1
Q ss_pred ceEEEEECCCCCcHHHHHHHHHCCCC
Q 044112 61 GEIMAIVGPSGAGKTTLLDILAGMIP 86 (610)
Q Consensus 61 Ge~~ailG~nGaGKSTLL~~L~g~~~ 86 (610)
|..+++=|+-||||||+.+.|+..+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56889999999999999999998764
No 500
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=90.89 E-value=0.094 Score=58.48 Aligned_cols=34 Identities=38% Similarity=0.536 Sum_probs=27.0
Q ss_pred ccccceeEEEeCceEEEEECCCCCcHHHHHHHHHCCC
Q 044112 49 CILKNVNCEARPGEIMAIVGPSGAGKTTLLDILAGMI 85 (610)
Q Consensus 49 ~iL~~vs~~i~~Ge~~ailG~nGaGKSTLL~~L~g~~ 85 (610)
.+|++++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566653 334578999999999999999999974
Done!