BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044114
(431 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 114/427 (26%), Positives = 202/427 (47%), Gaps = 49/427 (11%)
Query: 38 CSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTKVRIASF 97
C I+RVPE+ +P + P++VSIGP+H+G++ L+ +++HK R L+ FL K +
Sbjct: 46 CCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEE 105
Query: 98 VGFIKAR---EAELRNCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPIL 154
+KA E ++R Y+E + G D MVL D F++ +FL N+ +EDPI
Sbjct: 106 NVLVKAVVDLEDKIRKSYSEELKTGHDLMFMMVL-DGCFILMVFL-IMSGNIELSEDPIF 163
Query: 155 GKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEANLYEEISFMTITCFWFRDDI- 213
+L + + ++LLLENQ+P F+L L+ +K ++ I+F +F++ I
Sbjct: 164 SIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGV--SSDLNRIAF-----HFFKNPID 216
Query: 214 --VGYLPIQENLLEINFSKAKHFVDLLILCLQPSQSRAVFAL-----------KDLNIPS 260
Y N KAKH +DL+ P+ S + A K N+PS
Sbjct: 217 KEGSYWEKHRNY------KAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPS 270
Query: 261 V-----------MELHQAGVKFKRGSSKD--LLDIKFNEGILEIPFLTVYDPTERLYRNV 307
V L G+KF+ SK+ +L+++ + L+IP L + N
Sbjct: 271 VDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFFLNC 330
Query: 308 LAFEMMHS-YTKYLNDYIIMMNYLVSTSKDAELLLQNEII---GLGNTEAVPTVFRNLDK 363
+AFE ++ + + YI+ M L++ +D L +++I G+ V F+ + K
Sbjct: 331 VAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISK 390
Query: 364 GCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQ 423
+ V + Y K ++ A + +F +PW +S A + ++LLT +Q
Sbjct: 391 DVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQ 450
Query: 424 TVCSLIA 430
+ ++++
Sbjct: 451 STVAILS 457
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 123/247 (49%), Gaps = 20/247 (8%)
Query: 3 TRKHEHEGYGVSIDMEKLADSLSGELESLHPLARECSIYRVPEATRCSHPSHFTPRMVSI 62
T +H + I+++K SL ELE SI+ VP+A CSHP +TP VSI
Sbjct: 11 TEQHRFDETRWVINVQK---SLDAELEEHDLEEVTVSIFNVPKALMCSHPDSYTPHRVSI 67
Query: 63 GPFHHGKEELKAMEEHK---KRYLKCFLQRTKVRIASFVGFIKAREAELRNCYAETIHLG 119
GP+H K EL ME +K R ++ Q R V +++ E ++R CY + I
Sbjct: 68 GPYHCLKPELHEMERYKLMIARKIRN--QYNSFRFHDLVEKLQSMEIKIRACYHKYIGFN 125
Query: 120 SDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLPLFIL 179
+ + ++ VD+ FLIE FLK Y + R E L +N++ +I+++ENQ+PLF+L
Sbjct: 126 GETLLWIMAVDSSFLIE-FLKIY--SFRKVE--TLINRVGHNEILRDIMMIENQIPLFVL 180
Query: 180 NGL--FNLAKTETFEANLYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDL 237
F L TE+ + L +S +T C ++ + + +L+ F + H +D
Sbjct: 181 RKTLEFQLESTESADDLL---LSVLTGLCKDLSPLVIKF--DDDQILKAQFQECNHILDF 235
Query: 238 LILCLQP 244
L + P
Sbjct: 236 LYQMIVP 242
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 6/158 (3%)
Query: 253 LKDLNIPSVMELHQAGVKFKRGSSKDLLDIKF--NEGILEIPFLTVYDPTERLYRNVLAF 310
+++L IPSV +LH+AGV+FK + ++ + F N G +P + + TE + RN++A+
Sbjct: 340 VEELTIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAY 399
Query: 311 EMMHSYTKYL-NDYIIMMNYLVSTSKDAELLLQNEII--GLGNTEAVPTVFRNLDKGCAI 367
E ++ + Y ++N ++ + +D LL + ++ L + + ++ + K +
Sbjct: 400 EATNTSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRL 459
Query: 368 SYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPW 405
+ F + D+ Y W L + Y W
Sbjct: 460 TKVGF-LDKTIEDVNRYYTGRWKVKIGRLVEVYVYGSW 496
>sp|Q5FGP1|SYT_EHRRG Threonine--tRNA ligase OS=Ehrlichia ruminantium (strain Gardel)
GN=thrS PE=3 SV=1
Length = 633
Score = 35.8 bits (81), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 110 NCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILL 169
+C E I L SDE + ++ D ++ +K P ++T P + F Y D + + +
Sbjct: 54 DCKFEVITLDSDEGLDIIRHDTAHIMAQAIKEMFPEVKTVVGPTIKDGFYY-DFSTDHIF 112
Query: 170 LENQLPLFILNGLFNLAKTETFEANLY---EEISFMTITCFWFRDDIVGYLPIQENLLEI 226
N+L + K E+F ++ E I F + ++ I+ +PI EN I
Sbjct: 113 SSNELEKIEEKMREIIKKNESFIREVWTREEAIRFFSNKGEDYKVKIIAKIPIHEN---I 169
Query: 227 NFSKAKHFVDLLILCLQP 244
K F+D LC P
Sbjct: 170 TVYKQGSFID---LCRGP 184
>sp|Q5H9Z4|SYT_EHRRW Threonine--tRNA ligase OS=Ehrlichia ruminantium (strain
Welgevonden) GN=thrS PE=3 SV=1
Length = 633
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 10/138 (7%)
Query: 110 NCYAETIHLGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILL 169
+C E I L SDE + ++ D ++ +K P ++T P + F Y D + + +
Sbjct: 54 DCKFEVITLDSDEGLDIIRHDTAHIMAQAIKEMFPEVKTVVGPTIKDGFYY-DFSTDHIF 112
Query: 170 LENQLPLFILNGLFNLAKTETFEANLY---EEISFMTITCFWFRDDIVGYLPIQENLLEI 226
N+L + K E+F ++ E I F + ++ I+ +PI EN I
Sbjct: 113 SSNELEKIEEKMREIIKKNESFIREVWTREEAIRFFSNKGEDYKVKIIAKIPIHEN---I 169
Query: 227 NFSKAKHFVDLLILCLQP 244
K F+D LC P
Sbjct: 170 TVYKQGSFID---LCRGP 184
>sp|P54302|LUXQ_VIBHA Autoinducer 2 sensor kinase/phosphatase LuxQ OS=Vibrio harveyi
GN=luxQ PE=1 SV=1
Length = 859
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 121 DEFIKMVLVDA----VFLIELFLKYYQPNLRTNEDPILGKLFLYNDVTHEILLLENQLP 175
DE +K++LV+ F+++ F K Y+ + +D L + L +D T++++L++NQLP
Sbjct: 732 DESLKVLLVEDNHTNAFILQAFCKKYKMQVDWAKDG-LDAMELLSDTTYDLILMDNQLP 789
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,215,012
Number of Sequences: 539616
Number of extensions: 6446371
Number of successful extensions: 18566
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 18552
Number of HSP's gapped (non-prelim): 12
length of query: 431
length of database: 191,569,459
effective HSP length: 120
effective length of query: 311
effective length of database: 126,815,539
effective search space: 39439632629
effective search space used: 39439632629
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)