Query 044114
Match_columns 431
No_of_seqs 129 out of 678
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 11:36:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 2E-108 4E-113 843.5 32.2 371 40-420 1-391 (391)
2 COG4575 ElaB Uncharacterized c 66.2 5.4 0.00012 33.4 2.6 20 402-422 81-100 (104)
3 PRK10404 hypothetical protein; 62.2 7.7 0.00017 32.4 2.9 20 402-422 78-97 (101)
4 PF12911 OppC_N: N-terminal TM 60.8 12 0.00026 27.2 3.4 33 397-429 9-41 (56)
5 PF09069 EF-hand_3: EF-hand; 55.6 30 0.00065 28.3 5.2 54 77-130 2-76 (90)
6 PF07438 DUF1514: Protein of u 55.5 13 0.00029 28.3 2.8 22 405-426 2-23 (66)
7 PHA02103 hypothetical protein 55.3 15 0.00032 30.9 3.3 72 272-346 12-101 (135)
8 PRK10132 hypothetical protein; 54.3 13 0.00027 31.6 2.9 20 402-422 84-103 (108)
9 PF14770 TMEM18: Transmembrane 50.6 16 0.00034 31.7 3.0 48 378-428 55-102 (123)
10 PF11293 DUF3094: Protein of u 41.6 62 0.0013 23.9 4.4 33 379-416 10-42 (55)
11 PF05957 DUF883: Bacterial pro 40.6 27 0.00059 28.4 2.8 21 401-422 70-90 (94)
12 cd00948 FBP_aldolase_I_a Fruct 36.7 52 0.0011 33.2 4.5 81 337-423 82-166 (330)
13 PF15103 G0-G1_switch_2: G0/G1 36.3 36 0.00077 28.4 2.8 24 407-430 28-51 (102)
14 PF04971 Lysis_S: Lysis protei 34.7 59 0.0013 25.2 3.5 33 391-423 19-51 (68)
15 KOG3110 Riboflavin kinase [Coe 34.5 26 0.00056 30.8 1.8 59 55-113 65-138 (153)
16 KOG4134 DNA-dependent RNA poly 33.6 37 0.0008 32.4 2.8 38 33-81 20-57 (253)
17 PHA02680 ORF090 IMV phosphoryl 32.7 65 0.0014 26.1 3.6 29 403-431 43-71 (91)
18 PF05421 DUF751: Protein of un 32.2 78 0.0017 24.0 3.8 30 400-429 30-59 (61)
19 PF14579 HHH_6: Helix-hairpin- 31.5 1.2E+02 0.0025 24.4 5.1 79 268-350 1-84 (90)
20 PF10961 DUF2763: Protein of u 31.1 62 0.0013 26.5 3.4 26 403-428 14-42 (91)
21 cd00344 FBP_aldolase_I Fructos 26.1 96 0.0021 31.4 4.4 58 337-399 83-143 (328)
22 PF11446 DUF2897: Protein of u 25.6 81 0.0018 23.4 2.9 21 403-423 4-24 (55)
23 PF08181 DegQ: DegQ (SacQ) fam 23.9 1.8E+02 0.0039 20.2 4.0 30 75-104 1-30 (46)
24 PTZ00019 fructose-bisphosphate 23.8 1.2E+02 0.0025 31.0 4.5 58 337-399 85-145 (355)
25 PF05767 Pox_A14: Poxvirus vir 22.4 1.2E+02 0.0025 24.9 3.4 27 403-429 42-68 (92)
26 cd00925 Cyt_c_Oxidase_VIa Cyto 21.3 94 0.002 25.2 2.7 26 402-427 13-38 (86)
27 PF04531 Phage_holin_1: Bacter 20.8 1.2E+02 0.0026 24.4 3.2 23 401-423 8-30 (84)
28 PF09820 AAA-ATPase_like: Pred 20.6 84 0.0018 31.0 2.9 57 350-411 226-282 (284)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=1.8e-108 Score=843.46 Aligned_cols=371 Identities=42% Similarity=0.730 Sum_probs=335.0
Q ss_pred eeecCCccccCCCCCCccceeeeccccCChhhhhHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHhcccccc
Q 044114 40 IYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKRYLKCFLQRTK---VRIASFVGFIKAREAELRNCYAETI 116 (431)
Q Consensus 40 I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~~~~~~l~r~~---~~l~~~~~~i~~~e~~~R~~Y~~~~ 116 (431)
|||||+++|++|+++|+|++|||||||||+++|+.||++||+|++.|++|++ .++++++++|+++|++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 8999999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred C-CChHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-cccccchhhHHHHHHHhhccCchHHHHHHHHhhhhccccccc
Q 044114 117 H-LGSDEFIKMVLVDAVFLIELFLKYYQPNLRTNEDP-ILGKLFLYNDVTHEILLLENQLPLFILNGLFNLAKTETFEAN 194 (431)
Q Consensus 117 ~-~~~~ef~~MmllDGCFiLe~l~~~~~~~~~~~~d~-~~~~~~~~~~i~~DllLLENQiPffVL~~L~~~~~~~~~~~~ 194 (431)
+ +++++|++||++|||||||+|+++.. ..+.+|| +++.+|....|++||+|||||||||||++||++..+ ..
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~----~~ 154 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFG----SK 154 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcc----cc
Confidence 7 99999999999999999999999876 2346788 889999999999999999999999999999999884 33
Q ss_pred ccccccHHHHHHhhccccccCCCCCcchhhccccCcCCChHHHHHHHhCCCC--Cc-cc--c-c-----cccccCCCHHH
Q 044114 195 LYEEISFMTITCFWFRDDIVGYLPIQENLLEINFSKAKHFVDLLILCLQPSQ--SR-AV--F-A-----LKDLNIPSVME 263 (431)
Q Consensus 195 ~~~~~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~--~~-~~--~-~-----~~~~~~~sAte 263 (431)
.....++.+++.+||....+.. .+. ......+++|||||+|.+++|++ .. .+ + . .....||||||
T Consensus 155 ~~~~~~l~~l~~~~~~~~~~~~-~~~---~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~e 230 (391)
T PF03140_consen 155 SDVDESLIDLVLKFFYKHWPSW-PPD---EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATE 230 (391)
T ss_pred cCccchHHHHHHhHhccccccc-ccc---ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHH
Confidence 3446789999999994332222 111 12234578999999999999932 11 11 1 1 13468999999
Q ss_pred HHHcCcEEEeCCCC-CccceEEccceeecceEEeecCcchhcccHHHHhhhccC-CcchhhHHHHHHhhcCChHhHHHHH
Q 044114 264 LHQAGVKFKRGSSK-DLLDIKFNEGILEIPFLTVYDPTERLYRNVLAFEMMHSY-TKYLNDYIIMMNYLVSTSKDAELLL 341 (431)
Q Consensus 264 L~~aGVkfk~~~~~-~llDI~F~~G~L~IP~l~id~~T~~llrNLiA~Eq~~~~-~~~vtsY~~fM~~Li~t~eDV~lL~ 341 (431)
|++|||+||++++. +++||+|++|+|+||+|.||++|+++||||||||||+.. +.+|||||.||++||+|++||++|+
T Consensus 231 L~~aGV~fk~~~~~~~~lDv~F~~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~ 310 (391)
T PF03140_consen 231 LREAGVKFKPSETDRSLLDVKFKKGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLR 310 (391)
T ss_pred HHhCCcEEeeccCccccccceecCCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHH
Confidence 99999999998876 599999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HcCee--ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCchhHhHhhhcccccccchHHHHHHHHHHHHHH
Q 044114 342 QNEII--GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLL 419 (431)
Q Consensus 342 ~~gIi--~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~ill~l 419 (431)
++||| ++|||+||+++||+||+++..+.+++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|+|
T Consensus 311 ~kgIi~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~l 390 (391)
T PF03140_consen 311 RKGIIVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLL 390 (391)
T ss_pred hCCeEecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHh
Confidence 99999 8999999999999999999988778899999999999999999999999999999999999999999999999
Q ss_pred H
Q 044114 420 T 420 (431)
Q Consensus 420 t 420 (431)
|
T Consensus 391 T 391 (391)
T PF03140_consen 391 T 391 (391)
T ss_pred C
Confidence 7
No 2
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=66.25 E-value=5.4 Score=33.37 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=14.8
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 044114 402 NTPWASISVIAAVILLLLTSI 422 (431)
Q Consensus 402 ~npW~~is~~aA~ill~lt~~ 422 (431)
-|||..|++.|| ++|+++++
T Consensus 81 e~PWq~VGvaAa-VGlllGlL 100 (104)
T COG4575 81 ENPWQGVGVAAA-VGLLLGLL 100 (104)
T ss_pred cCCchHHHHHHH-HHHHHHHH
Confidence 579999998776 56666554
No 3
>PRK10404 hypothetical protein; Provisional
Probab=62.19 E-value=7.7 Score=32.42 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=15.4
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 044114 402 NTPWASISVIAAVILLLLTSI 422 (431)
Q Consensus 402 ~npW~~is~~aA~ill~lt~~ 422 (431)
.|||..+++.|+ ++|+++++
T Consensus 78 e~Pw~avGiaag-vGlllG~L 97 (101)
T PRK10404 78 EKPWQGIGVGAA-VGLVLGLL 97 (101)
T ss_pred hCcHHHHHHHHH-HHHHHHHH
Confidence 389999997555 77787765
No 4
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=60.78 E-value=12 Score=27.16 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred cccccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 044114 397 KQNYFNTPWASISVIAAVILLLLTSIQTVCSLI 429 (431)
Q Consensus 397 ~~~yf~npW~~is~~aA~ill~lt~~Qt~~sv~ 429 (431)
.+.+++|+.+++|++.-+++++++++..+++-+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 477888999999999988888888888776543
No 5
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=55.55 E-value=30 Score=28.31 Aligned_cols=54 Identities=17% Similarity=0.458 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhh-----hhHHHHHHHHHH-------------HHHHHHhcccc---ccCCChHHHHHHHHHH
Q 044114 77 EHKKRYLKCFLQRTK-----VRIASFVGFIKA-------------REAELRNCYAE---TIHLGSDEFIKMVLVD 130 (431)
Q Consensus 77 ~~K~~~~~~~l~r~~-----~~l~~~~~~i~~-------------~e~~~R~~Y~~---~~~~~~~ef~~MmllD 130 (431)
+.|.||+=+++...+ ..++.++..+.. .|..+|+|+.. .-+++.++|+..|..|
T Consensus 2 ~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 358899888887643 134444433222 67889999977 4578889998888655
No 6
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=55.47 E-value=13 Score=28.28 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 044114 405 WASISVIAAVILLLLTSIQTVC 426 (431)
Q Consensus 405 W~~is~~aA~ill~lt~~Qt~~ 426 (431)
|.++|.+.|+++|++-.+|+-.
T Consensus 2 WIiiSIvLai~lLI~l~~ns~l 23 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSEL 23 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHHH
Confidence 8999999999999999888753
No 7
>PHA02103 hypothetical protein
Probab=55.29 E-value=15 Score=30.92 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=50.4
Q ss_pred EeCCCCCccc--eEEc----cce--eecceEEeecCcchhcccHHHHhhhccC-------C---cchhhHHHHHHhhcCC
Q 044114 272 KRGSSKDLLD--IKFN----EGI--LEIPFLTVYDPTERLYRNVLAFEMMHSY-------T---KYLNDYIIMMNYLVST 333 (431)
Q Consensus 272 k~~~~~~llD--I~F~----~G~--L~IP~l~id~~T~~llrNLiA~Eq~~~~-------~---~~vtsY~~fM~~Li~t 333 (431)
|+...+..+- |.|+ +.+ -+||.+..|....-+-|=.+-+|.|... . .++-+|-.. .-..
T Consensus 12 k~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyry---f~ee 88 (135)
T PHA02103 12 KPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRY---FGEE 88 (135)
T ss_pred CCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHH---hccc
Confidence 3344444443 4454 455 4899999999999999999999999753 1 345555443 4467
Q ss_pred hHhHHHHHHcCee
Q 044114 334 SKDAELLLQNEII 346 (431)
Q Consensus 334 ~eDV~lL~~~gIi 346 (431)
+|-|++-.+.||=
T Consensus 89 ~e~ie~we~ygve 101 (135)
T PHA02103 89 AEGVELWEEYGVE 101 (135)
T ss_pred chhhhHHHHhCcc
Confidence 7888888888886
No 8
>PRK10132 hypothetical protein; Provisional
Probab=54.28 E-value=13 Score=31.57 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 044114 402 NTPWASISVIAAVILLLLTSI 422 (431)
Q Consensus 402 ~npW~~is~~aA~ill~lt~~ 422 (431)
.|||..+++.|+ ++|+++++
T Consensus 84 ~~Pw~svgiaag-vG~llG~L 103 (108)
T PRK10132 84 ERPWCSVGTAAA-VGIFIGAL 103 (108)
T ss_pred hCcHHHHHHHHH-HHHHHHHH
Confidence 579999997655 77777765
No 9
>PF14770 TMEM18: Transmembrane protein 18
Probab=50.57 E-value=16 Score=31.70 Aligned_cols=48 Identities=33% Similarity=0.434 Sum_probs=35.6
Q ss_pred HHHHHhhhcCchhHhHhhhcccccccchHHHHHHHHHHHHHHHHHHHhhhh
Q 044114 378 VADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVILLLLTSIQTVCSL 428 (431)
Q Consensus 378 ~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~ill~lt~~Qt~~sv 428 (431)
.+.+|++..+.|+.. -+++||..-=.+||++-++=+|+.+++..+..+
T Consensus 55 aE~iN~~~a~nW~~F---s~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l 102 (123)
T PF14770_consen 55 AEYINEYAARNWRSF---SKQNYFDSSGVFISVVFSAPLLLNCLIILVNWL 102 (123)
T ss_pred HHHHHHHHHHHHHHH---hhccCcCCCCeeehHHHHHhHHHHHHHHHHHHH
Confidence 378999888877443 357999999999999988766666666555443
No 10
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=41.64 E-value=62 Score=23.87 Aligned_cols=33 Identities=18% Similarity=0.479 Sum_probs=26.1
Q ss_pred HHHHhhhcCchhHhHhhhcccccccchHHHHHHHHHHH
Q 044114 379 ADLQAYCKLPWHKWKATLKQNYFNTPWASISVIAAVIL 416 (431)
Q Consensus 379 ~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~aA~il 416 (431)
+++++|-++.|+.- -|+-|+ ||..+.++.|+++
T Consensus 10 ~~Vd~yL~a~~~~V----ER~PFr-P~~Ll~~li~Vv~ 42 (55)
T PF11293_consen 10 QRVDEYLQAGVNQV----ERKPFR-PWRLLIVLIVVVI 42 (55)
T ss_pred HHHHHHHhCCCCcc----ccCCcc-hHHHHHHHHHHHH
Confidence 78999999998743 466775 9999988887655
No 11
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=40.60 E-value=27 Score=28.36 Aligned_cols=21 Identities=29% Similarity=0.619 Sum_probs=15.2
Q ss_pred cccchHHHHHHHHHHHHHHHHH
Q 044114 401 FNTPWASISVIAAVILLLLTSI 422 (431)
Q Consensus 401 f~npW~~is~~aA~ill~lt~~ 422 (431)
=.|||..+++.++ ++++++++
T Consensus 70 ~e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 70 RENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HHChHHHHHHHHH-HHHHHHHH
Confidence 3679999887776 66666654
No 12
>cd00948 FBP_aldolase_I_a Fructose-1,6-bisphosphate aldolase. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). This family includes proteins found in vertebrates, plants, and bacterial plant pathogens. Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates.
Probab=36.70 E-value=52 Score=33.21 Aligned_cols=81 Identities=21% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHHHHHcCee-ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhc--CchhHhHhhhcccccccc-hHHHHHHH
Q 044114 337 AELLLQNEII-GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCK--LPWHKWKATLKQNYFNTP-WASISVIA 412 (431)
Q Consensus 337 V~lL~~~gIi-~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~--~r~~~w~a~l~~~yf~np-W~~is~~a 412 (431)
|++|+++||| .+.=|+-+..+.++ .+-. .... +.++.+...+||. -|+.+|++.++-.-- .| ...|.-.|
T Consensus 82 ~~~L~~~GIvPgIKVDkGl~~l~g~--~~e~--~t~G-LD~L~~R~~~y~~~GarFAKwRsVi~i~~~-~PS~~~I~~na 155 (330)
T cd00948 82 VDILKEKGIVPGIKVDKGLVPLAGT--DGET--TTQG-LDGLAERCAKYYKQGARFAKWRAVLKIGNG-TPSELAIKENA 155 (330)
T ss_pred HHHHHHCCCeeeEEeCCCccccCCC--CCCc--cCcC-hHHHHHHHHHHhhcCCcceeeheeeeccCC-CCcHHHHHHHH
Confidence 8889999999 88878777777654 2211 1333 8899999999986 457789988765422 23 23344444
Q ss_pred HHHHHHHHHHH
Q 044114 413 AVILLLLTSIQ 423 (431)
Q Consensus 413 A~ill~lt~~Q 423 (431)
..+.=...+.|
T Consensus 156 ~~LaryA~icq 166 (330)
T cd00948 156 HGLARYAAICQ 166 (330)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 13
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=36.26 E-value=36 Score=28.40 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 044114 407 SISVIAAVILLLLTSIQTVCSLIA 430 (431)
Q Consensus 407 ~is~~aA~ill~lt~~Qt~~sv~~ 430 (431)
+++-+.|+++.++++++|+|+-++
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs 51 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFS 51 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccc
Confidence 467777899999999999998654
No 14
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=34.74 E-value=59 Score=25.19 Aligned_cols=33 Identities=30% Similarity=0.592 Sum_probs=25.0
Q ss_pred HhHhhhcccccccchHHHHHHHHHHHHHHHHHH
Q 044114 391 KWKATLKQNYFNTPWASISVIAAVILLLLTSIQ 423 (431)
Q Consensus 391 ~w~a~l~~~yf~npW~~is~~aA~ill~lt~~Q 423 (431)
-|...+...+-+.-|.+|++++.+++-++|.+-
T Consensus 19 ~wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 19 YWLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 355555566667789999999998888887653
No 15
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=34.46 E-value=26 Score=30.84 Aligned_cols=59 Identities=17% Similarity=0.252 Sum_probs=38.8
Q ss_pred Cccceeeec--cccCChh---hhhHHHHHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHhccc
Q 044114 55 FTPRMVSIG--PFHHGKE---ELKAMEEHKKRYLKCFLQRT----------KVRIASFVGFIKAREAELRNCYA 113 (431)
Q Consensus 55 Y~P~~VSIG--PyHhg~~---~L~~mE~~K~~~~~~~l~r~----------~~~l~~~~~~i~~~e~~~R~~Y~ 113 (431)
--|.++||| ||..++. ++..++..|.-+-...++-. =.++++++++|..-.+.|+..-+
T Consensus 65 v~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred ceeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 358899999 7877652 34445555555444443221 13689999999999888887554
No 16
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=33.56 E-value=37 Score=32.43 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=28.1
Q ss_pred CCCCCceeeecCCccccCCCCCCccceeeeccccCChhhhhHHHHHHHH
Q 044114 33 PLARECSIYRVPEATRCSHPSHFTPRMVSIGPFHHGKEELKAMEEHKKR 81 (431)
Q Consensus 33 ~~~~~~~I~rVP~~lr~~n~~aY~P~~VSIGPyHhg~~~L~~mE~~K~~ 81 (431)
..+...|++++|-.+ .+|+||||-.++.-..||+|=-.
T Consensus 20 ~nsp~sclv~~t~dl-----------hlalaP~yl~npl~~~i~ehld~ 57 (253)
T KOG4134|consen 20 ANSPESCLVCITTDL-----------HLALAPYYLANPLHALIEEHLDT 57 (253)
T ss_pred hcCCcceEEEeeehe-----------eeeecchhhcchhHHHHHHHhhH
Confidence 345677999999875 78999999887655566666433
No 17
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=32.66 E-value=65 Score=26.14 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhccC
Q 044114 403 TPWASISVIAAVILLLLTSIQTVCSLIAL 431 (431)
Q Consensus 403 npW~~is~~aA~ill~lt~~Qt~~sv~~y 431 (431)
++|.++|.++-+++.++++-=-+||.+.|
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47888888877777777666666776653
No 18
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=32.16 E-value=78 Score=24.00 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=25.4
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHHhhhhc
Q 044114 400 YFNTPWASISVIAAVILLLLTSIQTVCSLI 429 (431)
Q Consensus 400 yf~npW~~is~~aA~ill~lt~~Qt~~sv~ 429 (431)
-++||-+.++++++++..+..+.+|+-++.
T Consensus 30 llk~p~tai~~i~~~~~~~~~l~~tL~aMl 59 (61)
T PF05421_consen 30 LLKNPVTAIALIGILIGGFIFLYFTLRAML 59 (61)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 357899999999999999999988887664
No 19
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=31.54 E-value=1.2e+02 Score=24.41 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=53.9
Q ss_pred CcEEEeCC-CCCccceEEcc--ceeecceEEeecCcchhcccHHHHhhhccCCcchhhHHHHHHhh-cCChHhHHHHHHc
Q 044114 268 GVKFKRGS-SKDLLDIKFNE--GILEIPFLTVYDPTERLYRNVLAFEMMHSYTKYLNDYIIMMNYL-VSTSKDAELLLQN 343 (431)
Q Consensus 268 GVkfk~~~-~~~llDI~F~~--G~L~IP~l~id~~T~~llrNLiA~Eq~~~~~~~vtsY~~fM~~L-i~t~eDV~lL~~~ 343 (431)
||++.+.. ..|-.+-+..+ +.+.+|--.|..-.+.....+++-=+ ...++|+..|...+ --+..+++.|.+.
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~----~g~f~s~~df~~R~~~i~~~~le~Li~a 76 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE----NGPFKSLEDFIQRLPKINKRQLEALIKA 76 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH----CSS-SSHHHHHHHS-TS-HHHHHHHHHT
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh----cCCCCCHHHHHHHHhcCCHHHHHHHHHC
Confidence 78887743 23444555555 79999999999988887777665444 34578999999999 8889999999999
Q ss_pred Cee-ccCC
Q 044114 344 EII-GLGN 350 (431)
Q Consensus 344 gIi-~lgs 350 (431)
|.+ .++.
T Consensus 77 Gafd~~~~ 84 (90)
T PF14579_consen 77 GAFDSFGK 84 (90)
T ss_dssp TTTTTCSS
T ss_pred CCccccCh
Confidence 999 7765
No 20
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=31.09 E-value=62 Score=26.49 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=18.0
Q ss_pred cch---HHHHHHHHHHHHHHHHHHHhhhh
Q 044114 403 TPW---ASISVIAAVILLLLTSIQTVCSL 428 (431)
Q Consensus 403 npW---~~is~~aA~ill~lt~~Qt~~sv 428 (431)
+|| .++-++-+++-++..++||+++.
T Consensus 14 spWrls~I~d~Fwgi~~fI~lFF~Tl~~p 42 (91)
T PF10961_consen 14 SPWRLSRITDFFWGIINFIVLFFQTLFSP 42 (91)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 466 35566667777777788888774
No 21
>cd00344 FBP_aldolase_I Fructose-bisphosphate aldolase class I. Fructose-1,6-bisphosphate aldolase is an enzyme of the glycolytic and gluconeogenic pathways found in vertebrates, plants, and bacteria. The enzyme catalyzes the cleavage of fructose 1,6-bisphosphate to glyceraldehyde 3-phosphate and dihydroxyacetone phosphate (DHAP). Mutations in the aldolase genes in humans cause hemolytic anemia and hereditary fructose intolerance. The enzyme is a member of the class I aldolase family, which utilizes covalent catalysis through a Schiff base formed between a lysine residue of the enzyme and ketose substrates. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=26.11 E-value=96 Score=31.43 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=41.6
Q ss_pred HHHHHHcCee-ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhc--CchhHhHhhhccc
Q 044114 337 AELLLQNEII-GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCK--LPWHKWKATLKQN 399 (431)
Q Consensus 337 V~lL~~~gIi-~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~--~r~~~w~a~l~~~ 399 (431)
+++|+++||| ++.=|+-+..+.+ ..+-. .... +.++.+...+||. -|..+|++.++-.
T Consensus 83 ~~ll~~~GIvPgIKVDkGl~~l~g--~~~ek--~t~G-LD~L~~R~~~y~~~GarfaKwRsVi~i~ 143 (328)
T cd00344 83 PQVIKSKGGVVGIKVDKGVVPLAG--TNGET--TTQG-LDGLSERCAQYKKDGADFAKWRCVLKIG 143 (328)
T ss_pred HHHHHhCCCeeeEEecCCcccCCC--CCCCc--cCCC-hHHHHHHHHHHhhcCCceeeeeeeeecC
Confidence 7899999999 8877776666653 22221 2334 8999999999985 4567899877553
No 22
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=25.64 E-value=81 Score=23.37 Aligned_cols=21 Identities=24% Similarity=0.626 Sum_probs=16.9
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 044114 403 TPWASISVIAAVILLLLTSIQ 423 (431)
Q Consensus 403 npW~~is~~aA~ill~lt~~Q 423 (431)
+||.+|.++.|+|+--++++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 699999999998877666654
No 23
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=23.89 E-value=1.8e+02 Score=20.15 Aligned_cols=30 Identities=27% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 044114 75 MEEHKKRYLKCFLQRTKVRIASFVGFIKAR 104 (431)
Q Consensus 75 mE~~K~~~~~~~l~r~~~~l~~~~~~i~~~ 104 (431)
||+.|..-+++++-|....+.+-.+.++..
T Consensus 1 mek~~ieelkqll~rle~eirett~sl~ni 30 (46)
T PF08181_consen 1 MEKKKIEELKQLLWRLENEIRETTDSLRNI 30 (46)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888898888766665554444443
No 24
>PTZ00019 fructose-bisphosphate aldolase; Provisional
Probab=23.84 E-value=1.2e+02 Score=31.04 Aligned_cols=58 Identities=26% Similarity=0.435 Sum_probs=41.5
Q ss_pred HHHHHHcCee-ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcC--chhHhHhhhccc
Q 044114 337 AELLLQNEII-GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKL--PWHKWKATLKQN 399 (431)
Q Consensus 337 V~lL~~~gIi-~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~--r~~~w~a~l~~~ 399 (431)
|++|+++||| .+.=|+-+..+ .+.-.. ..... +.++.+...+||.- |+.+|++.++-.
T Consensus 85 ~~~L~~~GIvPgIKVDkGl~~l-~G~~~e---~~t~G-LD~L~~R~~~y~~~GarFAKwRsVi~i~ 145 (355)
T PTZ00019 85 VELLKEKGIVPGIKVDKGLVTL-PGTDGE---TSTQG-LDGLAERAKKYYKAGARFAKWRAVLKID 145 (355)
T ss_pred HHHHHHCCCeeeEEcCCCccCC-CCCCCC---ccCcC-hHHHHHHHHHHHhcCCceeeeeeeeeec
Confidence 8899999999 88777777766 332111 11333 89999999999864 577899887653
No 25
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=22.41 E-value=1.2e+02 Score=24.92 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhc
Q 044114 403 TPWASISVIAAVILLLLTSIQTVCSLI 429 (431)
Q Consensus 403 npW~~is~~aA~ill~lt~~Qt~~sv~ 429 (431)
.+|+++|.++-+++.++++-=-+||.+
T Consensus 42 ~~wRalSii~FI~giil~lG~~i~s~y 68 (92)
T PF05767_consen 42 YTWRALSIICFILGIILTLGIVIFSMY 68 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888877777777766667665
No 26
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=21.27 E-value=94 Score=25.24 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=21.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhh
Q 044114 402 NTPWASISVIAAVILLLLTSIQTVCS 427 (431)
Q Consensus 402 ~npW~~is~~aA~ill~lt~~Qt~~s 427 (431)
++-|+-||+++|+-+++++++.|+..
T Consensus 13 ~~~WkkiS~~va~P~v~l~~~n~y~~ 38 (86)
T cd00925 13 SELWKKISFYVALPAVALCMLNAYLK 38 (86)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 34688899999998889999888754
No 27
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.79 E-value=1.2e+02 Score=24.37 Aligned_cols=23 Identities=22% Similarity=0.285 Sum_probs=14.6
Q ss_pred cccchHHHHHHHHHHHHHHHHHH
Q 044114 401 FNTPWASISVIAAVILLLLTSIQ 423 (431)
Q Consensus 401 f~npW~~is~~aA~ill~lt~~Q 423 (431)
|.||-..+|+++|+++++.++..
T Consensus 8 ~kN~~~w~ali~~i~l~vq~~~~ 30 (84)
T PF04531_consen 8 FKNKAFWVALISAILLLVQQVGG 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH
Confidence 36776677777776666555544
No 28
>PF09820 AAA-ATPase_like: Predicted AAA-ATPase; InterPro: IPR018631 This entry is predicted to be an AAA-ATPase domain []. It is usually found together with IPR012547 from INTERPRO.
Probab=20.62 E-value=84 Score=30.97 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=39.5
Q ss_pred CCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCchhHhHhhhcccccccchHHHHHH
Q 044114 350 NTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWHKWKATLKQNYFNTPWASISVI 411 (431)
Q Consensus 350 sdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~~w~a~l~~~yf~npW~~is~~ 411 (431)
+++||.++|+...+...... -.....++|.++|+.-.-.+... ..--.|||.++..+
T Consensus 226 T~~Ev~~ll~~~~~~~~~~~---~~~~~~~~lk~wYdGY~F~~~~~--~~~iYNP~Svl~~l 282 (284)
T PF09820_consen 226 TEEEVETLLKYYIENLAEEQ---DREELLEELKEWYDGYHFGESSE--GERIYNPWSVLNYL 282 (284)
T ss_pred CHHHHHHHHHHHHHHhhhcc---chHHHHHHHHHHcCCcccCCCCC--CCCEEChHHHHHHh
Confidence 77899999998876654322 26778899999998764322111 24567999988765
Done!