Query 044114
Match_columns 431
No_of_seqs 129 out of 678
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 20:14:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hbx_G ETS-domain protein ELK- 15.8 90 0.0031 26.9 2.8 72 325-407 10-92 (157)
2 1bc8_C SAP-1, protein (SAP-1 E 15.7 1.4E+02 0.0049 23.4 3.8 71 325-406 9-90 (93)
3 1v54_G Cytochrome C oxidase po 15.2 1E+02 0.0035 23.8 2.8 24 403-426 14-37 (85)
4 4avp_A ETS translocation varia 14.9 1.2E+02 0.004 24.5 3.2 56 350-410 44-101 (106)
5 2qap_A Fructose-1,6-bisphospha 14.9 32 0.0011 34.1 -0.3 94 325-423 107-208 (391)
6 1awc_A Protein (GA binding pro 14.7 64 0.0022 26.2 1.6 59 350-413 33-93 (110)
7 2kru_A Light-independent proto 14.0 51 0.0018 24.1 0.7 15 172-186 15-29 (63)
8 2l27_B Peptide agonist; CRF, E 13.5 24 0.00081 23.0 -1.1 21 292-313 1-21 (38)
9 3mbd_A Fructose-bisphosphate a 13.0 53 0.0018 31.9 0.7 64 337-407 92-159 (342)
10 3s8f_C Cytochrome C oxidase po 12.5 2E+02 0.0069 18.3 3.1 21 409-429 7-27 (34)
No 1
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=15.79 E-value=90 Score=26.91 Aligned_cols=72 Identities=13% Similarity=0.123 Sum_probs=44.8
Q ss_pred HHHHhhcCChHhHHHHHHcCee-ccC--------CCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCchh-HhH-
Q 044114 325 IMMNYLVSTSKDAELLLQNEII-GLG--------NTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWH-KWK- 393 (431)
Q Consensus 325 ~fM~~Li~t~eDV~lL~~~gIi-~lg--------sdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~-~w~- 393 (431)
.|+-.|...++ ..++| |.+ +.++||+++..--.. +.-+ |.++.+.+.-||++..- +-.
T Consensus 10 qFLleLL~d~~------~~~~I~Wt~~~geFklvdpe~VArLWG~rKnk----p~Mn-YeKLSRALRyYY~k~Ii~KV~G 78 (157)
T 1hbx_G 10 QFLLQLLQKPQ------NKHMICWTSNDGQFKLLQAEEVARLWGIRKNK----PNMN-YDKLSRALRYYYVKNIIKKVNG 78 (157)
T ss_dssp HHTTTSSSCGG------GTTTEEECSSSSCEEETTHHHHHHHHHHGGGC----TTCC-HHHHHHHHHHHHHTTSEEECSS
T ss_pred HHHHHHhcCcc------cCCceEEeCCCCEEEecCcHHHHHHHHhccCC----CCcC-HHHHHHHHHHHHhcCcEEecCC
Confidence 34444555543 25777 544 568999999744322 2334 99999999999986531 111
Q ss_pred hhhcccccccchHH
Q 044114 394 ATLKQNYFNTPWAS 407 (431)
Q Consensus 394 a~l~~~yf~npW~~ 407 (431)
..+..+|..+|+..
T Consensus 79 qrlvYkF~~~p~~l 92 (157)
T 1hbx_G 79 QKFVYKFVSYPEIL 92 (157)
T ss_dssp CTTEEEESSTTGGG
T ss_pred CeEEEeeCCCHHHh
Confidence 34566677778753
No 2
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=15.69 E-value=1.4e+02 Score=23.38 Aligned_cols=71 Identities=13% Similarity=0.134 Sum_probs=42.9
Q ss_pred HHHHhhcCChHhHHHHHHcCee-ccC--------CCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCchh-HhH-
Q 044114 325 IMMNYLVSTSKDAELLLQNEII-GLG--------NTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWH-KWK- 393 (431)
Q Consensus 325 ~fM~~Li~t~eDV~lL~~~gIi-~lg--------sdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~-~w~- 393 (431)
.|+-.|...++ ..++| |.+ +.++||+++..--.. +.-+ |.++...+.-||++.-- +-.
T Consensus 9 ~FL~~LL~d~~------~~~~I~W~~~~g~Fkl~d~~~VArlWG~rKnk----~~Mn-YeklSRaLRyYY~~~il~Kv~g 77 (93)
T 1bc8_C 9 QFLLQLLQKPQ------NKHMICWTSNDGQFKLLQAEEVARLWGIRKNK----PNMN-YDKLSRALRYYYVKNIIKKVNG 77 (93)
T ss_dssp HHHHHHTTCGG------GTTTSEECSSSSEEECTTHHHHHHHHHHHHTC----TTCC-HHHHHHHHHHHHHHTSEEECTT
T ss_pred HHHHHHhcCcc------cCCceEEeCCCCEEEecCHHHHHHHHHhcCCC----CCcC-HHHHHHHHHHHHhcCcEEecCC
Confidence 34445555554 25676 543 568999998744322 2334 99999999999975421 111
Q ss_pred hhhcccccccchH
Q 044114 394 ATLKQNYFNTPWA 406 (431)
Q Consensus 394 a~l~~~yf~npW~ 406 (431)
..+...|...|..
T Consensus 78 ~r~vY~F~~~p~~ 90 (93)
T 1bc8_C 78 QKFVYKFVSYPEI 90 (93)
T ss_dssp STTEEEETTTTGG
T ss_pred CeEEEEeCCChHH
Confidence 2445556666654
No 3
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=15.18 E-value=1e+02 Score=23.84 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=19.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhh
Q 044114 403 TPWASISVIAAVILLLLTSIQTVC 426 (431)
Q Consensus 403 npW~~is~~aA~ill~lt~~Qt~~ 426 (431)
+-|+-||+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999888888888764
No 4
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=14.93 E-value=1.2e+02 Score=24.46 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=36.7
Q ss_pred CCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCch-hHhH-hhhcccccccchHHHHH
Q 044114 350 NTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPW-HKWK-ATLKQNYFNTPWASISV 410 (431)
Q Consensus 350 sdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~-~~w~-a~l~~~yf~npW~~is~ 410 (431)
+.++||+++..--.. +.-+ |.++...|.-||++.- .+-. ..+..++..+|-..+|.
T Consensus 44 dp~~VA~lWG~rKnk----p~M~-YeKlSRaLRyYY~kgii~Kv~G~r~vYkF~~~p~~l~~~ 101 (106)
T 4avp_A 44 EPEEVARRWGIQKNR----PAMN-YDKLSRSLRYYYEKGIMQKVAGERYVYKFVCDPEALFSM 101 (106)
T ss_dssp SHHHHHHHHHHHTTC----TTCC-HHHHHHHHHHHHHHTSEEECTTCSSEEEECCSHHHHHHH
T ss_pred CHHHHHHHHHhccCC----CCcC-HHHHHHHHHHHHhcCeEEecCCCeEEEEecCCHHHHHhc
Confidence 567899998764422 2344 9999999999998552 2222 23455666788766554
No 5
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel, fructose-1,6-bisphosphate teminal tail, lyase; 1.59A {Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A* 2qdh_A* 1epx_A 1f2j_A
Probab=14.86 E-value=32 Score=34.13 Aligned_cols=94 Identities=15% Similarity=0.162 Sum_probs=54.2
Q ss_pred HHHHhhcCChHh----HHHHHHcCee-ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcC--chhHhHhhhc
Q 044114 325 IMMNYLVSTSKD----AELLLQNEII-GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKL--PWHKWKATLK 397 (431)
Q Consensus 325 ~fM~~Li~t~eD----V~lL~~~gIi-~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~--r~~~w~a~l~ 397 (431)
.|=.-|-.+..| |++|+++||| .+.=|+-+..+.++--.+.. ... +.++.+...+||.- |+.+|++.++
T Consensus 107 LFeETl~Qk~~dG~pf~~~L~~kGIvPGIKVDkGl~pl~~G~~~e~~---tqG-LDgL~eR~a~y~~~Ga~FAKWRsVik 182 (391)
T 2qap_A 107 LHDETVGQKASNGQTFPEYLTARGVVPGIKTDMGLCPLLEGAEGEQM---TEG-LDGYVKRASAYYKKGCRFCKWRNVYK 182 (391)
T ss_dssp ECHHHHTCBCTTSSBHHHHHHHTTCEEEEECCCCEEECSSSSTTCEE---ECC-CTTHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred cchHhccCcCcCCcCHHHHHHHCCCeeEEEecCCcccccCCCCCCcc---CCC-hhHHHHHHHHHHhcCCcceeeeeEEe
Confidence 333334343455 8999999999 87777666655533221111 222 77788888888764 5778998876
Q ss_pred cc-ccccchHHHHHHHHHHHHHHHHHH
Q 044114 398 QN-YFNTPWASISVIAAVILLLLTSIQ 423 (431)
Q Consensus 398 ~~-yf~npW~~is~~aA~ill~lt~~Q 423 (431)
-. ...|+-. |.-.|..+.=...+.|
T Consensus 183 i~~~~PS~~a-I~~na~~LArYA~icQ 208 (391)
T 2qap_A 183 IQNGTVSESA-VRFNAETLARYAILSQ 208 (391)
T ss_dssp CBTTBCCHHH-HHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHH-HHHHHHHHHHHHHHHH
Confidence 53 4444443 3333333333344444
No 6
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=14.73 E-value=64 Score=26.24 Aligned_cols=59 Identities=15% Similarity=0.094 Sum_probs=41.1
Q ss_pred CCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCch-hHhH-hhhcccccccchHHHHHHHH
Q 044114 350 NTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPW-HKWK-ATLKQNYFNTPWASISVIAA 413 (431)
Q Consensus 350 sdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~-~~w~-a~l~~~yf~npW~~is~~aA 413 (431)
+.++||+++..-- + .+.-+ |.++...+.-||++.- .+-. ..+...|..+|+..++.-++
T Consensus 33 d~e~VArlWG~rK-n---kp~Mn-YeKlSRaLRyYY~k~ii~Kv~GkrlvY~F~~~~~~l~g~~~~ 93 (110)
T 1awc_A 33 QPELVAQKWGQRK-N---KPTMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAA 93 (110)
T ss_dssp SHHHHHHHHHHHH-T---CTTCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHH
T ss_pred CHHHHHHHHHHcc-C---CCCCC-HHHHHHHHHHHHhcCCEeeccCCeeEEecCCCHHHHhCCCHH
Confidence 6689999997553 2 12345 9999999999999763 1222 34677777889987766554
No 7
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=13.98 E-value=51 Score=24.08 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=11.5
Q ss_pred cCchHHHHHHHHhhh
Q 044114 172 NQLPLFILNGLFNLA 186 (431)
Q Consensus 172 NQiPffVL~~L~~~~ 186 (431)
++|||||=.++=+-+
T Consensus 15 kkIP~FVR~kvrr~t 29 (63)
T 2kru_A 15 GKVPFFVRKKVRKNT 29 (63)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH
Confidence 569999988875544
No 8
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=13.47 E-value=24 Score=23.02 Aligned_cols=21 Identities=29% Similarity=0.312 Sum_probs=15.5
Q ss_pred ceEEeecCcchhcccHHHHhhh
Q 044114 292 PFLTVYDPTERLYRNVLAFEMM 313 (431)
Q Consensus 292 P~l~id~~T~~llrNLiA~Eq~ 313 (431)
||+.+| -|..+|||++-....
T Consensus 1 PPiSlD-LTFhlLR~m~emar~ 21 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIAKA 21 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHHHH
Confidence 666665 688999999876543
No 9
>3mbd_A Fructose-bisphosphate aldolase; glycolysis, lyase, schiff base; 2.00A {Encephalitozoon cuniculi} PDB: 3mbf_A* 3qrh_A
Probab=13.02 E-value=53 Score=31.93 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=42.2
Q ss_pred HHHHHHcCee-ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhc--CchhHhHhhhcc-cccccchHH
Q 044114 337 AELLLQNEII-GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCK--LPWHKWKATLKQ-NYFNTPWAS 407 (431)
Q Consensus 337 V~lL~~~gIi-~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~--~r~~~w~a~l~~-~yf~npW~~ 407 (431)
|++|+++||| .+.=|+-+..+ ..+... ... +.++.+...+||. -++.+|++.++- +...|+-.+
T Consensus 92 ~~~L~~kGIvpGIKVDkG~~pl----~~ge~~--tqG-LDgL~eR~a~y~~~Ga~FAKWR~Vlki~~~~PS~~aI 159 (342)
T 3mbd_A 92 TELLKKKGIEIGIKLDKGLIDY----KEKEKI--SVG-LEDLDLRCKSSAFKDATFAKWRSLFYFYDGIPSEDCI 159 (342)
T ss_dssp HHHHHHTTCEEEEECCCCEEEE----TTTEEE--ECC-GGGHHHHHTCGGGTTCCEEEEEEEECCBTTBSCHHHH
T ss_pred HHHHHHCCCeeEEecCCCCcCC----CCCCcc--ccc-hHHHHHHHHHHHhcCCceeeeeeEEecCCCCCCHHHH
Confidence 6889999999 77767666555 233222 123 7888888888876 457789887754 344454443
No 10
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=12.49 E-value=2e+02 Score=18.29 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhc
Q 044114 409 SVIAAVILLLLTSIQTVCSLI 429 (431)
Q Consensus 409 s~~aA~ill~lt~~Qt~~sv~ 429 (431)
+++++++++-+.++=+++.++
T Consensus 7 GTl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHHHHH
Confidence 566677777777776766654
Done!