Query 044114
Match_columns 431
No_of_seqs 129 out of 678
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 20:14:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044114.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044114hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 28.4 35 0.0025 25.3 4.6 52 77-128 3-77 (97)
2 d1awca_ a.4.5.21 (A:) GA bindi 21.9 26 0.0019 26.6 2.8 66 344-414 27-94 (110)
3 d1duxc_ a.4.5.21 (C:) Elk-1 {H 21.5 40 0.0029 24.4 3.6 41 343-388 27-67 (86)
4 d1v54g_ f.23.2.1 (G:) Mitochon 19.9 32 0.0023 24.8 2.8 23 404-426 15-37 (84)
5 d1yo5c1 a.4.5.21 (C:247-334) S 17.4 44 0.0032 24.2 3.1 41 343-388 30-70 (88)
6 d2i4ra1 c.149.1.1 (A:4-79) V-t 13.3 31 0.0022 24.2 1.2 24 40-63 53-76 (76)
7 d1puee_ a.4.5.21 (E:) Transcri 11.5 86 0.0063 22.5 3.3 42 343-388 28-71 (88)
8 d1wwxa1 a.4.5.21 (A:8-101) E74 11.4 62 0.0046 23.6 2.4 41 343-388 29-69 (94)
9 d2qapa1 c.1.10.1 (A:1-357) Fru 10.6 31 0.0022 31.6 0.5 57 337-397 103-162 (357)
10 d1zaia1 c.1.10.1 (A:1-363) Fru 9.9 27 0.0019 32.1 -0.3 56 337-397 94-152 (363)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.44 E-value=35 Score=25.28 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhh-----hhHHHHHHHHHH---------------HHHHHHhccccc---cCCChHHHHHHHH
Q 044114 77 EHKKRYLKCFLQRTK-----VRIASFVGFIKA---------------REAELRNCYAET---IHLGSDEFIKMVL 128 (431)
Q Consensus 77 ~~K~~~~~~~l~r~~-----~~l~~~~~~i~~---------------~e~~~R~~Y~~~---~~~~~~ef~~Mml 128 (431)
+.|.||+=+.+...+ ..++.++..+.. +|..+|+|+... -+.+.++|+.-|.
T Consensus 3 ~dKyRYlF~qisd~~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCTTSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 358899988887643 235544443322 367778888532 2466677665554
No 2
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.86 E-value=26 Score=26.61 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=44.9
Q ss_pred CeeccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCchh-HhH-hhhcccccccchHHHHHHHHH
Q 044114 344 EIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLPWH-KWK-ATLKQNYFNTPWASISVIAAV 414 (431)
Q Consensus 344 gIi~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r~~-~w~-a~l~~~yf~npW~~is~~aA~ 414 (431)
|+.-+-+.++||+++.. .|+- +.-+ |.++...|.-||++.-- +-. ..+...|..+||..++.-++-
T Consensus 27 geFkl~d~e~VA~lWG~-~Knk---~~M~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~ 94 (110)
T d1awca_ 27 GEFKLNQPELVAQKWGQ-RKNK---PTMN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAE 94 (110)
T ss_dssp SEEECSSHHHHHHHHHH-HHTC---TTCC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHH
T ss_pred CEEEeCCHHHHHHHHHH-hhCC---Cccc-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHH
Confidence 43334466899999964 3332 2345 99999999999988632 222 356788889999987665553
No 3
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.46 E-value=40 Score=24.38 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=29.3
Q ss_pred cCeeccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCc
Q 044114 343 NEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLP 388 (431)
Q Consensus 343 ~gIi~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 388 (431)
+|+.-+-+.++||+++..- |+ .++-+ |.++.+.|.-||++.
T Consensus 27 ~g~Fklv~~~~VA~lWG~~-Kn---k~~Mn-YeklSRaLRyyY~~~ 67 (86)
T d1duxc_ 27 GGEFKLVDAEEVARLWGLR-KN---KTNMN-YDKLSRALRYYYDKN 67 (86)
T ss_dssp TTEEECTTHHHHHHHHHHT-TT---CSCCC-HHHHHHHHHHHHTTT
T ss_pred CCEEEecCHHHHHHHHHhc-cC---CCCCC-HHHHHHHHHHHHhcc
Confidence 4555344668999999643 33 22445 999999999999875
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.89 E-value=32 Score=24.80 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhh
Q 044114 404 PWASISVIAAVILLLLTSIQTVC 426 (431)
Q Consensus 404 pW~~is~~aA~ill~lt~~Qt~~ 426 (431)
-|+-|++++|+-+++++++.++.
T Consensus 15 lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 58889999999888888888763
No 5
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.43 E-value=44 Score=24.21 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=28.2
Q ss_pred cCeeccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCc
Q 044114 343 NEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLP 388 (431)
Q Consensus 343 ~gIi~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 388 (431)
+|+.-+-+.++||+++..--.. ++-+ |.++...|..||++.
T Consensus 30 ~g~Fkl~~~~~VA~lWG~~Knk----~~M~-YeklSRALRyYY~~~ 70 (88)
T d1yo5c1 30 KGIFKIEDSAQVARLWGIRKNR----PAMN-YDKLSRSIRQYYKKG 70 (88)
T ss_dssp TTEEEESCHHHHHHHHHHHHTC----TTCC-HHHHHHHHHHTTTTT
T ss_pred CceEEecCHHHHHHHHHHhhcC----CCCC-HHHHHHHHHHHHhcc
Confidence 3444234568899999654422 2334 999999999999876
No 6
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.27 E-value=31 Score=24.18 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=20.2
Q ss_pred eeecCCccccCCCCCCccceeeec
Q 044114 40 IYRVPEATRCSHPSHFTPRMVSIG 63 (431)
Q Consensus 40 I~rVP~~lr~~n~~aY~P~~VSIG 63 (431)
.-++|+.+++.-.+.-.|.++.||
T Consensus 53 a~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 53 LKKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp STTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHHhhHHHHHHHhcCCCCEEEecC
Confidence 346788888877888999999998
No 7
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.52 E-value=86 Score=22.54 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=28.5
Q ss_pred cCee-ccC-CCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCc
Q 044114 343 NEII-GLG-NTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLP 388 (431)
Q Consensus 343 ~gIi-~lg-sdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 388 (431)
+||. ... +.++||+++..--++- ++-+ |.++...|.-||++.
T Consensus 28 ~g~F~fv~~~~e~VA~lWG~~K~Nr---~~Mn-YeklSRaLRyYY~~~ 71 (88)
T d1puee_ 28 KGTFQFSSKHKEALAHRWGIQKGNR---KKMT-YEKMARALRNYGKTG 71 (88)
T ss_dssp TTEEEECTTTHHHHHHHHHHHHTCS---SCCC-HHHHHHHHHHHHHHS
T ss_pred CceEEEEeCCHHHHHHHHHhhcCCC---CCCc-HHHHHHHHHHHHhcc
Confidence 4555 333 3478999998555331 1334 999999999999865
No 8
>d1wwxa1 a.4.5.21 (A:8-101) E74-like factor 5 ese-2b {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.37 E-value=62 Score=23.64 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=28.9
Q ss_pred cCeeccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcCc
Q 044114 343 NEIIGLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKLP 388 (431)
Q Consensus 343 ~gIi~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 388 (431)
+|+.-+-+.++||+++-.--..- .-+ |.++...|.-||++.
T Consensus 29 ~g~Fkl~d~~~VA~lWG~~K~~~----~M~-YeklSRaLRyYY~~~ 69 (94)
T d1wwxa1 29 QGIFRVVKSEALAKMWGQRKKND----RMT-YEKLSRALRYYYKTG 69 (94)
T ss_dssp TTEEECSCHHHHHHHHHHHHTCT----TCC-HHHHHHHHHHHHHHT
T ss_pred CcEEEEcCHHHHHHHHHhhcCCC----CCc-HHHHHHHHHHHHhcc
Confidence 44443345689999997655432 334 999999999999764
No 9
>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Probab=10.62 E-value=31 Score=31.63 Aligned_cols=57 Identities=19% Similarity=0.331 Sum_probs=38.4
Q ss_pred HHHHHHcCee-ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhc--CchhHhHhhhc
Q 044114 337 AELLLQNEII-GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCK--LPWHKWKATLK 397 (431)
Q Consensus 337 V~lL~~~gIi-~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~--~r~~~w~a~l~ 397 (431)
+++|.++||| ++.=|+-++.+.++....-. ... +.++.+...+||. -+..+|++.+.
T Consensus 103 ~~ll~~kGIVPgIKVDkGl~~~~~G~~~ek~---t~g-LD~L~~R~~ey~~~Ga~faKwRsVi~ 162 (357)
T d2qapa1 103 PEYLTARGVVPGIKTDMGLCPLLEGAEGEQM---TEG-LDGYVKRASAYYKKGCRFCKWRNVYK 162 (357)
T ss_dssp HHHHHHTTCEEEEECCCCEEECSSSSTTCEE---ECC-CTTHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred HHHHHhCCCeeeeecCCcccCCCCCCCcccc---ccc-hHHHHHHHHHhhhcceecccchhccc
Confidence 7899999999 88777665444433322111 223 7888899999984 45678888764
No 10
>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId: 9986]}
Probab=9.90 E-value=27 Score=32.13 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHHcCee-ccCCCchHHHHHHhhccCCcccCCCCchHHHHHHHHhhhcC--chhHhHhhhc
Q 044114 337 AELLLQNEII-GLGNTEAVPTVFRNLDKGCAISYSYFQYSGVVADLQAYCKL--PWHKWKATLK 397 (431)
Q Consensus 337 V~lL~~~gIi-~lgsdeeVa~lF~~L~~~~~~~~~~~y~~~v~~~ln~~~~~--r~~~w~a~l~ 397 (431)
+++|.++||| ++.=|+-+..+...=+..++ . -+.++-+.+.+||.. |..+|++.+.
T Consensus 94 ~~ll~~kGIvPgIKVDkGl~~l~~~~ge~~t----~-gLd~L~~rl~~y~~~Ga~faKwRsVi~ 152 (363)
T d1zaia1 94 PQVIKSKGGVVGIKVDKGVVPLAGTNGETTT----Q-GLDGLSERCAQYKKDGADFAKWRCVLK 152 (363)
T ss_dssp HHHHHHTTCEEEEECCCCEEECTTSSSCEEE----C-CCTTHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred chhhhhcCceeeEecCccccccCCCcccccc----c-ccccHHHHHHHHHhcCccccchhhccc
Confidence 8999999999 77766655544321111111 1 155677888888875 4668888764
Done!