Query 044119
Match_columns 816
No_of_seqs 309 out of 2061
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 8E-146 2E-150 1314.3 83.1 724 69-802 37-797 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 5E-120 1E-124 1074.7 54.0 722 69-802 17-767 (769)
3 PRK03562 glutathione-regulated 100.0 4.3E-46 9.2E-51 438.8 44.2 367 75-466 5-381 (621)
4 PRK10669 putative cation:proto 100.0 2.1E-45 4.6E-50 431.2 43.0 369 76-464 7-388 (558)
5 PRK03659 glutathione-regulated 100.0 3.4E-45 7.3E-50 430.6 44.1 367 75-466 5-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 3E-43 6.4E-48 393.8 41.9 375 73-465 4-385 (397)
7 PRK05326 potassium/proton anti 100.0 1.5E-38 3.3E-43 373.1 39.7 376 73-465 4-388 (562)
8 TIGR00932 2a37 transporter, mo 100.0 1.3E-34 2.8E-39 310.6 31.1 266 85-368 2-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 4.5E-39 9.8E-44 361.4 -3.9 368 82-464 3-378 (380)
10 COG4651 RosB Kef-type K+ trans 100.0 9.9E-32 2.1E-36 273.2 30.4 373 71-465 3-388 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.7E-26 3.7E-31 268.7 39.6 353 75-436 13-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 3E-26 6.5E-31 265.9 38.6 366 81-466 4-410 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 1.7E-23 3.8E-28 236.4 39.2 378 75-466 6-408 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 8.3E-23 1.8E-27 217.8 28.5 361 72-451 4-372 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 7.9E-22 1.7E-26 228.9 35.2 370 83-466 17-418 (559)
16 KOG1965 Sodium/hydrogen exchan 99.7 5.9E-16 1.3E-20 173.5 24.6 380 77-465 37-455 (575)
17 PRK14853 nhaA pH-dependent sod 99.7 6.9E-15 1.5E-19 162.6 32.3 271 135-433 63-363 (423)
18 KOG4505 Na+/H+ antiporter [Ino 99.7 1.4E-14 3E-19 150.3 24.7 345 77-433 16-383 (467)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 7.1E-12 1.5E-16 136.3 25.7 270 135-433 53-344 (373)
20 PRK11175 universal stress prot 99.5 7E-12 1.5E-16 136.7 23.1 272 494-799 5-300 (305)
21 PRK14856 nhaA pH-dependent sod 99.1 1.2E-08 2.6E-13 112.9 26.0 294 134-459 68-425 (438)
22 cd01988 Na_H_Antiporter_C The 99.1 4.6E-10 9.9E-15 106.1 11.9 130 494-639 1-131 (132)
23 PRK09560 nhaA pH-dependent sod 99.1 1.3E-08 2.9E-13 111.0 24.7 269 136-433 61-353 (389)
24 PRK09561 nhaA pH-dependent sod 99.1 1.7E-08 3.6E-13 110.0 23.9 270 135-433 60-351 (388)
25 KOG1966 Sodium/hydrogen exchan 99.1 7.2E-11 1.6E-15 132.2 4.8 367 86-465 53-449 (670)
26 PRK14854 nhaA pH-dependent sod 99.1 7.4E-08 1.6E-12 104.8 26.2 270 135-433 57-348 (383)
27 PRK14855 nhaA pH-dependent sod 99.0 5.5E-08 1.2E-12 107.4 23.9 266 135-434 64-384 (423)
28 PF06965 Na_H_antiport_1: Na+/ 98.8 1.7E-08 3.7E-13 110.0 11.4 273 134-435 55-353 (378)
29 COG3004 NhaA Na+/H+ antiporter 98.8 1.2E-06 2.5E-11 92.0 23.0 262 144-434 72-355 (390)
30 cd01988 Na_H_Antiporter_C The 98.4 6.9E-06 1.5E-10 77.3 14.5 128 656-798 1-132 (132)
31 cd01989 STK_N The N-terminal d 98.3 4.8E-06 1E-10 80.3 11.8 140 494-643 1-146 (146)
32 PF00582 Usp: Universal stress 98.3 9E-06 1.9E-10 76.3 11.7 129 655-798 3-140 (140)
33 cd01987 USP_OKCHK USP domain i 98.2 6.9E-06 1.5E-10 76.8 10.3 120 494-638 1-122 (124)
34 PF00582 Usp: Universal stress 98.2 3.8E-06 8.3E-11 78.8 7.8 135 493-638 3-138 (140)
35 cd01989 STK_N The N-terminal d 98.1 5.9E-05 1.3E-09 72.6 12.9 128 656-799 1-145 (146)
36 PRK15456 universal stress prot 98.0 3.9E-05 8.4E-10 73.8 11.4 133 494-638 4-140 (142)
37 PRK15005 universal stress prot 98.0 9.8E-05 2.1E-09 70.9 13.7 127 655-798 3-144 (144)
38 PRK15005 universal stress prot 97.9 8.3E-05 1.8E-09 71.4 11.2 133 494-638 4-142 (144)
39 cd00293 USP_Like Usp: Universa 97.9 8.4E-05 1.8E-09 68.8 10.6 128 494-638 1-129 (130)
40 PRK09982 universal stress prot 97.9 0.00011 2.3E-09 70.9 10.9 124 655-798 4-138 (142)
41 cd01987 USP_OKCHK USP domain i 97.9 0.00014 2.9E-09 68.0 11.3 123 656-797 1-123 (124)
42 PRK09982 universal stress prot 97.8 0.00018 3.9E-09 69.3 11.1 129 494-638 5-136 (142)
43 cd00293 USP_Like Usp: Universa 97.8 0.00043 9.4E-09 64.0 13.3 125 656-797 1-130 (130)
44 PF05684 DUF819: Protein of un 97.8 0.047 1E-06 61.3 31.5 292 98-438 24-351 (378)
45 PRK12460 2-keto-3-deoxyglucona 97.7 0.0047 1E-07 66.3 21.4 253 143-466 51-306 (312)
46 PRK15118 universal stress glob 97.7 0.00022 4.9E-09 68.5 10.5 132 494-638 5-136 (144)
47 PRK15456 universal stress prot 97.7 0.00061 1.3E-08 65.4 13.2 125 655-798 3-142 (142)
48 PRK15118 universal stress glob 97.7 0.00044 9.5E-09 66.5 12.1 125 654-800 3-140 (144)
49 PRK10116 universal stress prot 97.7 0.00049 1.1E-08 65.9 12.2 125 654-798 3-138 (142)
50 PF03812 KdgT: 2-keto-3-deoxyg 97.6 0.01 2.2E-07 63.4 21.5 88 143-231 51-140 (314)
51 TIGR00698 conserved hypothetic 97.6 0.12 2.6E-06 57.0 30.0 88 94-189 26-115 (335)
52 PRK10116 universal stress prot 97.4 0.0012 2.7E-08 63.1 11.4 134 493-639 4-137 (142)
53 PRK11175 universal stress prot 97.4 0.00061 1.3E-08 74.2 10.3 139 493-644 153-303 (305)
54 COG0786 GltS Na+/glutamate sym 97.3 0.063 1.4E-06 59.1 23.0 157 273-430 170-360 (404)
55 PF03601 Cons_hypoth698: Conse 97.1 0.11 2.5E-06 56.5 22.9 138 96-249 23-162 (305)
56 PF03616 Glt_symporter: Sodium 97.1 0.45 9.6E-06 53.4 27.9 91 319-415 246-342 (368)
57 COG3180 AbrB Putative ammonia 97.0 0.55 1.2E-05 51.5 26.8 300 76-433 7-318 (352)
58 PRK03562 glutathione-regulated 96.8 0.051 1.1E-06 65.3 18.8 132 301-438 10-142 (621)
59 PRK12652 putative monovalent c 96.7 0.017 3.7E-07 64.2 13.2 123 654-787 5-144 (357)
60 TIGR00793 kdgT 2-keto-3-deoxyg 96.7 0.063 1.4E-06 57.2 16.2 88 143-231 51-140 (314)
61 COG0385 Predicted Na+-dependen 96.7 1.1 2.3E-05 48.9 25.5 144 133-290 34-191 (319)
62 PF03390 2HCT: 2-hydroxycarbox 96.6 0.16 3.4E-06 57.0 19.4 318 77-437 31-393 (414)
63 COG3493 CitS Na+/citrate sympo 96.6 0.69 1.5E-05 50.6 23.3 85 351-437 325-412 (438)
64 COG0798 ACR3 Arsenite efflux p 96.5 0.6 1.3E-05 50.7 22.0 175 102-290 20-202 (342)
65 PRK03659 glutathione-regulated 96.5 0.12 2.6E-06 61.9 18.9 115 301-419 10-125 (601)
66 PF13593 DUF4137: SBF-like CPA 96.5 0.96 2.1E-05 49.6 24.4 102 136-249 30-139 (313)
67 TIGR00932 2a37 transporter, mo 96.4 0.13 2.8E-06 55.2 17.3 128 307-440 3-132 (273)
68 PRK10669 putative cation:proto 96.4 0.13 2.9E-06 61.1 18.7 134 302-441 12-146 (558)
69 TIGR00832 acr3 arsenical-resis 96.2 1.2 2.6E-05 49.2 23.2 36 385-420 252-287 (328)
70 COG0475 KefB Kef-type K+ trans 96.1 0.22 4.8E-06 56.5 17.6 147 300-451 10-159 (397)
71 COG0589 UspA Universal stress 96.1 0.11 2.5E-06 49.4 13.1 132 654-800 5-153 (154)
72 COG0589 UspA Universal stress 95.9 0.11 2.3E-06 49.6 12.2 137 493-638 6-149 (154)
73 PF03601 Cons_hypoth698: Conse 95.8 0.3 6.4E-06 53.3 16.1 130 303-434 5-139 (305)
74 TIGR00783 ccs citrate carrier 95.4 1.5 3.3E-05 48.3 19.5 118 319-437 203-326 (347)
75 PRK05326 potassium/proton anti 95.3 0.31 6.8E-06 58.0 15.6 117 303-422 13-132 (562)
76 PF05145 AmoA: Putative ammoni 95.3 5.9 0.00013 43.6 27.3 128 301-435 157-287 (318)
77 PF03956 DUF340: Membrane prot 95.2 0.18 3.9E-06 51.1 11.1 125 103-249 2-131 (191)
78 PRK05274 2-keto-3-deoxyglucona 95.2 0.6 1.3E-05 51.3 15.7 80 145-224 55-136 (326)
79 PF06826 Asp-Al_Ex: Predicted 95.0 0.78 1.7E-05 45.6 14.7 126 83-222 5-136 (169)
80 COG2855 Predicted membrane pro 95.0 0.33 7.2E-06 52.8 12.9 116 313-431 30-145 (334)
81 PF01758 SBF: Sodium Bile acid 94.9 2 4.4E-05 43.3 17.7 28 141-168 2-29 (187)
82 COG2855 Predicted membrane pro 94.8 7.7 0.00017 42.5 24.7 103 94-212 32-135 (334)
83 PLN03159 cation/H(+) antiporte 94.5 0.99 2.1E-05 56.2 17.3 42 651-692 455-498 (832)
84 TIGR00698 conserved hypothetic 94.5 1.3 2.8E-05 49.0 16.2 128 304-433 10-144 (335)
85 TIGR00210 gltS sodium--glutama 94.4 12 0.00025 42.6 31.7 91 319-412 244-337 (398)
86 PRK12652 putative monovalent c 94.2 0.25 5.3E-06 55.1 9.9 128 493-635 6-145 (357)
87 PRK03818 putative transporter; 94.0 1.3 2.9E-05 52.4 16.2 133 73-221 4-141 (552)
88 TIGR00844 c_cpa1 na(+)/h(+) an 93.9 1.1 2.3E-05 54.5 15.1 71 351-423 74-146 (810)
89 TIGR00831 a_cpa1 Na+/H+ antipo 93.4 0.78 1.7E-05 54.1 12.9 118 303-425 5-124 (525)
90 TIGR03802 Asp_Ala_antiprt aspa 93.1 0.99 2.1E-05 53.6 13.2 116 96-223 412-531 (562)
91 TIGR00841 bass bile acid trans 92.9 16 0.00035 39.6 24.9 50 138-188 9-62 (286)
92 TIGR03802 Asp_Ala_antiprt aspa 92.8 0.73 1.6E-05 54.7 11.5 95 80-189 15-113 (562)
93 TIGR03082 Gneg_AbrB_dup membra 92.3 3.8 8.2E-05 40.1 14.0 121 305-432 4-127 (156)
94 PF03616 Glt_symporter: Sodium 92.0 3 6.6E-05 46.8 14.5 105 80-192 226-335 (368)
95 TIGR01625 YidE_YbjL_dupl AspT/ 91.7 2.4 5.1E-05 41.5 11.6 114 98-223 20-138 (154)
96 PRK10490 sensor protein KdpD; 91.3 0.9 2E-05 57.2 10.4 122 490-639 248-372 (895)
97 PRK04972 putative transporter; 91.2 1.6 3.4E-05 51.9 11.8 120 79-221 16-140 (558)
98 TIGR03082 Gneg_AbrB_dup membra 90.1 4.6 0.0001 39.5 12.1 96 82-190 2-99 (156)
99 COG1346 LrgB Putative effector 89.9 22 0.00047 36.9 16.8 112 339-463 60-171 (230)
100 PRK12460 2-keto-3-deoxyglucona 87.8 2.8 6E-05 45.5 9.4 76 102-189 169-244 (312)
101 PRK04288 antiholin-like protei 87.7 39 0.00084 35.4 17.4 110 341-463 65-174 (232)
102 PRK10490 sensor protein KdpD; 86.9 7.4 0.00016 49.1 14.0 123 654-798 250-373 (895)
103 PRK04972 putative transporter; 86.9 7.9 0.00017 46.1 13.4 131 80-222 386-525 (558)
104 COG2985 Predicted permease [Ge 86.8 6.3 0.00014 44.9 11.6 102 140-249 62-172 (544)
105 PF03956 DUF340: Membrane prot 86.7 5.2 0.00011 40.6 10.2 49 381-429 58-106 (191)
106 TIGR00808 malonate_madM malona 86.6 8 0.00017 39.0 10.9 106 81-192 19-134 (254)
107 PF02040 ArsB: Arsenical pump 86.1 70 0.0015 36.7 21.2 38 212-249 116-153 (423)
108 COG5505 Predicted integral mem 85.9 55 0.0012 35.3 27.8 275 133-438 56-357 (384)
109 TIGR00946 2a69 he Auxin Efflux 85.9 18 0.00038 39.8 14.8 135 95-249 178-313 (321)
110 COG0025 NhaP NhaP-type Na+/H+ 85.6 5.8 0.00013 45.6 11.1 122 302-426 12-137 (429)
111 KOG2310 DNA repair exonuclease 85.2 1.8 3.9E-05 49.5 6.4 127 589-715 41-196 (646)
112 COG0786 GltS Na+/glutamate sym 84.5 15 0.00032 41.1 12.9 112 75-192 222-336 (404)
113 PRK10711 hypothetical protein; 83.8 50 0.0011 34.5 15.8 110 341-463 60-169 (231)
114 PF00999 Na_H_Exchanger: Sodiu 83.4 0.42 9.2E-06 53.7 0.6 112 306-421 6-123 (380)
115 TIGR00210 gltS sodium--glutama 83.2 39 0.00084 38.5 16.1 163 78-249 222-390 (398)
116 PF03547 Mem_trans: Membrane t 82.5 10 0.00022 42.7 11.4 135 323-465 9-146 (385)
117 COG1346 LrgB Putative effector 82.1 57 0.0012 33.9 15.1 129 78-224 9-143 (230)
118 COG2205 KdpD Osmosensitive K+ 82.0 6.1 0.00013 47.9 9.3 121 490-636 246-369 (890)
119 PRK03818 putative transporter; 81.2 14 0.00031 43.8 12.3 106 102-219 403-513 (552)
120 TIGR00659 conserved hypothetic 80.9 76 0.0016 33.1 17.0 109 342-463 60-168 (226)
121 COG4651 RosB Kef-type K+ trans 80.7 8.7 0.00019 41.2 8.9 131 301-440 11-145 (408)
122 PRK03359 putative electron tra 80.6 9.5 0.00021 40.6 9.5 86 660-756 31-122 (256)
123 PF03977 OAD_beta: Na+-transpo 79.9 16 0.00036 39.8 10.9 108 351-465 67-175 (360)
124 TIGR03136 malonate_biotin Na+- 79.5 25 0.00054 38.9 12.2 110 350-465 102-212 (399)
125 PRK12342 hypothetical protein; 79.0 6.8 0.00015 41.6 7.8 98 659-769 29-137 (254)
126 TIGR00930 2a30 K-Cl cotranspor 77.8 2.1E+02 0.0046 36.5 54.4 134 487-644 570-710 (953)
127 PF05145 AmoA: Putative ammoni 77.7 46 0.001 36.6 14.1 101 77-190 154-256 (318)
128 COG3263 NhaP-type Na+/H+ and K 77.5 23 0.00049 40.1 11.3 109 312-421 23-132 (574)
129 PF04172 LrgB: LrgB-like famil 76.5 99 0.0021 32.0 15.5 108 342-462 50-157 (215)
130 TIGR02432 lysidine_TilS_N tRNA 73.8 22 0.00048 35.5 9.7 57 656-717 1-57 (189)
131 COG2431 Predicted membrane pro 72.3 58 0.0013 34.7 12.2 77 101-189 108-188 (297)
132 PF01171 ATP_bind_3: PP-loop f 72.2 15 0.00032 36.8 7.9 57 656-717 1-57 (182)
133 COG0679 Predicted permeases [G 70.7 1.7E+02 0.0036 32.0 28.1 137 320-463 167-306 (311)
134 PRK15475 oxaloacetate decarbox 69.4 7.8 0.00017 42.6 5.3 110 350-465 131-246 (433)
135 PRK15477 oxaloacetate decarbox 69.1 7.9 0.00017 42.6 5.2 109 351-465 132-246 (433)
136 PRK15476 oxaloacetate decarbox 69.1 7.9 0.00017 42.6 5.2 110 350-465 131-246 (433)
137 COG2985 Predicted permease [Ge 69.0 23 0.00051 40.5 9.0 108 99-218 395-506 (544)
138 TIGR00783 ccs citrate carrier 68.2 69 0.0015 35.6 12.4 89 98-192 203-294 (347)
139 PRK05253 sulfate adenylyltrans 65.9 22 0.00048 38.8 8.1 37 656-692 29-65 (301)
140 KOG0573 Asparagine synthase [A 64.8 49 0.0011 37.6 10.4 107 621-739 225-335 (520)
141 PRK04288 antiholin-like protei 64.3 1.9E+02 0.0041 30.3 14.9 57 132-190 64-120 (232)
142 PF01889 DUF63: Membrane prote 64.2 2.1E+02 0.0046 30.8 16.4 46 204-249 148-195 (273)
143 PRK09903 putative transporter 64.0 1.1E+02 0.0025 33.3 13.4 109 97-223 171-280 (314)
144 PF01012 ETF: Electron transfe 63.9 21 0.00046 34.9 6.9 81 665-756 15-100 (164)
145 COG3329 Predicted permease [Ge 63.4 1.5E+02 0.0034 32.1 13.2 120 320-445 16-138 (372)
146 PRK04125 murein hydrolase regu 62.6 1.3E+02 0.0027 29.1 11.5 104 75-187 8-115 (141)
147 TIGR01625 YidE_YbjL_dupl AspT/ 62.4 31 0.00067 33.8 7.6 87 323-409 24-116 (154)
148 COG2205 KdpD Osmosensitive K+ 61.7 94 0.002 38.2 12.6 123 654-798 248-373 (890)
149 TIGR02039 CysD sulfate adenyly 60.8 27 0.00059 37.9 7.5 55 656-717 21-75 (294)
150 PF06181 DUF989: Protein of un 59.6 2.3E+02 0.0049 30.6 13.7 40 352-392 229-268 (300)
151 PF04172 LrgB: LrgB-like famil 59.5 1.7E+02 0.0036 30.4 12.6 40 151-190 65-104 (215)
152 cd01992 PP-ATPase N-terminal d 59.5 48 0.001 32.8 8.8 58 656-718 1-58 (185)
153 TIGR00840 b_cpa1 sodium/hydrog 59.1 91 0.002 37.2 12.2 73 352-426 69-150 (559)
154 TIGR01109 Na_pump_decarbB sodi 57.8 39 0.00085 36.8 7.9 175 303-489 4-194 (354)
155 COG1883 OadB Na+-transporting 57.8 3.2 7E-05 43.9 -0.1 105 352-468 83-193 (375)
156 COG0679 Predicted permeases [G 56.4 1.9E+02 0.0041 31.7 13.4 100 322-424 11-112 (311)
157 PF13593 DUF4137: SBF-like CPA 55.9 1.1E+02 0.0024 33.6 11.4 92 322-416 6-98 (313)
158 PF05982 DUF897: Domain of unk 54.6 68 0.0015 35.2 9.1 49 143-192 213-264 (327)
159 COG2086 FixA Electron transfer 54.3 49 0.0011 35.3 8.0 106 664-782 36-149 (260)
160 cd01984 AANH_like Adenine nucl 54.1 15 0.00033 31.5 3.5 47 587-636 35-83 (86)
161 COG3969 Predicted phosphoadeno 53.2 31 0.00067 37.8 6.2 56 655-717 28-84 (407)
162 COG3180 AbrB Putative ammonia 52.5 3.1E+02 0.0068 30.5 13.9 126 300-435 10-139 (352)
163 cd01118 ArsB_permease Anion pe 51.5 4.1E+02 0.0088 30.1 22.4 24 89-112 10-33 (416)
164 PRK04125 murein hydrolase regu 49.9 1.8E+02 0.004 28.0 10.3 44 355-399 68-113 (141)
165 TIGR03136 malonate_biotin Na+- 48.8 4.3E+02 0.0093 29.6 23.6 256 76-379 21-307 (399)
166 COG0385 Predicted Na+-dependen 47.9 2.4E+02 0.0051 31.1 12.0 106 353-464 41-150 (319)
167 PF01032 FecCD: FecCD transpor 46.7 1.8E+02 0.004 31.8 11.3 26 88-113 32-57 (311)
168 PRK12563 sulfate adenylyltrans 46.6 45 0.00098 36.5 6.4 36 656-691 39-74 (312)
169 PF03977 OAD_beta: Na+-transpo 46.4 4.5E+02 0.0097 29.1 25.5 249 79-378 4-269 (360)
170 cd01984 AANH_like Adenine nucl 45.5 24 0.00052 30.2 3.4 33 657-690 1-33 (86)
171 KOG1288 Amino acid transporter 45.4 6.5E+02 0.014 30.7 16.8 99 492-611 560-663 (945)
172 TIGR00659 conserved hypothetic 45.3 3.8E+02 0.0083 28.0 14.2 43 148-190 72-114 (226)
173 COG3493 CitS Na+/citrate sympo 45.0 5E+02 0.011 29.3 15.4 110 91-210 281-393 (438)
174 COG2035 Predicted membrane pro 44.7 4.3E+02 0.0093 28.4 15.0 50 69-120 55-106 (276)
175 PF06826 Asp-Al_Ex: Predicted 44.4 2.4E+02 0.0051 28.1 10.6 87 321-410 24-116 (169)
176 PRK09535 btuC corrinoid ABC tr 43.4 5.3E+02 0.011 29.1 15.9 25 92-116 89-113 (366)
177 TIGR00946 2a69 he Auxin Efflux 43.1 4.8E+02 0.01 28.5 25.7 134 321-463 182-319 (321)
178 PRK01658 holin-like protein; V 42.0 3E+02 0.0065 25.8 11.7 105 75-188 5-113 (122)
179 PRK10577 iron-hydroxamate tran 41.3 6.3E+02 0.014 30.9 15.8 24 93-116 392-415 (668)
180 PF05684 DUF819: Protein of un 40.5 3.6E+02 0.0079 30.5 12.7 96 347-447 52-151 (378)
181 PF11616 EZH2_WD-Binding: WD r 40.3 13 0.00028 25.5 0.6 19 5-23 5-23 (30)
182 PRK01821 hypothetical protein; 40.0 3.4E+02 0.0074 25.9 11.4 104 75-187 10-117 (133)
183 COG1570 XseA Exonuclease VII, 39.1 42 0.00091 38.3 4.8 34 733-773 178-214 (440)
184 PF03390 2HCT: 2-hydroxycarbox 38.8 6.5E+02 0.014 28.8 16.5 70 341-412 80-154 (414)
185 COG3748 Predicted membrane pro 37.4 2.6E+02 0.0057 30.5 10.0 40 352-392 226-265 (407)
186 KOG1650 Predicted K+/H+-antipo 37.3 3.2E+02 0.007 34.0 12.5 65 140-211 313-377 (769)
187 PRK10660 tilS tRNA(Ile)-lysidi 36.5 2.6E+02 0.0056 32.3 11.0 59 655-718 16-75 (436)
188 TIGR00400 mgtE Mg2+ transporte 36.4 4.3E+02 0.0092 30.6 12.8 17 97-113 283-299 (449)
189 PRK14853 nhaA pH-dependent sod 35.4 4.3E+02 0.0094 30.3 12.2 27 344-370 59-85 (423)
190 PF04018 DUF368: Domain of unk 35.0 5.9E+02 0.013 27.2 15.9 44 69-114 54-97 (257)
191 PF03812 KdgT: 2-keto-3-deoxyg 34.7 1.5E+02 0.0032 32.4 7.9 74 103-188 175-248 (314)
192 PF03547 Mem_trans: Membrane t 34.3 6.9E+02 0.015 27.8 23.6 87 321-408 244-335 (385)
193 cd01995 ExsB ExsB is a transcr 32.7 2.1E+02 0.0045 27.9 8.3 85 656-757 1-87 (169)
194 COG0037 MesJ tRNA(Ile)-lysidin 32.4 3.6E+02 0.0079 28.8 10.9 57 655-718 22-78 (298)
195 KOG3826 Na+/H+ antiporter [Ino 31.2 62 0.0013 33.7 4.1 125 80-216 102-232 (252)
196 PRK10711 hypothetical protein; 31.1 6.4E+02 0.014 26.4 13.5 43 148-190 73-115 (231)
197 COG3763 Uncharacterized protei 30.7 2.4E+02 0.0051 23.7 6.6 37 263-302 9-45 (71)
198 TIGR00793 kdgT 2-keto-3-deoxyg 30.5 2.8E+02 0.0062 30.2 9.1 74 103-188 175-248 (314)
199 PRK01821 hypothetical protein; 30.5 4.9E+02 0.011 24.9 10.9 17 356-372 71-89 (133)
200 PF02601 Exonuc_VII_L: Exonucl 29.5 1.1E+02 0.0023 33.6 6.1 25 733-757 57-86 (319)
201 PF08659 KR: KR domain; Inter 29.3 2.6E+02 0.0057 27.6 8.5 86 660-757 4-92 (181)
202 cd01985 ETF The electron trans 28.9 3.5E+02 0.0075 26.7 9.3 80 664-757 18-102 (181)
203 PRK01658 holin-like protein; V 28.7 4.9E+02 0.011 24.4 10.3 18 355-372 65-84 (122)
204 PF03686 UPF0146: Uncharacteri 28.7 74 0.0016 30.0 3.9 37 576-612 71-107 (127)
205 cd01993 Alpha_ANH_like_II This 28.5 1.3E+02 0.0028 29.5 6.1 37 656-692 1-39 (185)
206 PF01507 PAPS_reduct: Phosphoa 28.4 1.4E+02 0.003 28.9 6.2 51 656-717 1-51 (174)
207 cd01713 PAPS_reductase This do 28.2 1.2E+02 0.0025 29.1 5.6 34 656-690 1-34 (173)
208 KOG2575 Glucosyltransferase - 27.1 9.8E+02 0.021 27.3 13.4 148 308-474 199-353 (510)
209 cd01996 Alpha_ANH_like_III Thi 26.9 3.4E+02 0.0074 25.8 8.5 24 655-678 2-25 (154)
210 KOG2718 Na+-bile acid cotransp 26.4 4.9E+02 0.011 29.4 10.4 47 141-188 117-163 (371)
211 PRK00536 speE spermidine synth 25.0 2E+02 0.0044 30.7 7.0 76 654-755 73-148 (262)
212 TIGR02359 thiW thiW protein. L 25.0 6.4E+02 0.014 24.9 9.9 15 101-115 34-48 (160)
213 PRK10441 iron-enterobactin tra 25.0 9.8E+02 0.021 26.6 17.3 56 93-149 55-111 (335)
214 TIGR00832 acr3 arsenical-resis 25.0 9.6E+02 0.021 26.4 13.6 68 362-431 55-127 (328)
215 PRK12933 secD preprotein trans 24.5 1.3E+03 0.028 27.9 14.8 29 261-289 568-596 (604)
216 COG0175 CysH 3'-phosphoadenosi 24.1 2.4E+02 0.0053 30.0 7.5 32 656-691 41-72 (261)
217 PLN02366 spermidine synthase 24.0 2.1E+02 0.0045 31.4 7.0 30 720-755 144-174 (308)
218 COG2431 Predicted membrane pro 23.6 9.5E+02 0.021 25.9 16.0 47 383-429 167-213 (297)
219 PRK04148 hypothetical protein; 23.3 1.1E+02 0.0024 29.2 4.1 38 576-613 78-115 (134)
220 COG1380 Putative effector of m 23.3 6.5E+02 0.014 23.9 11.6 107 74-188 5-114 (128)
221 TIGR02230 ATPase_gene1 F0F1-AT 23.0 1.9E+02 0.0041 26.2 5.3 37 173-209 51-88 (100)
222 PRK14854 nhaA pH-dependent sod 22.8 1.4E+02 0.003 33.7 5.3 27 345-371 54-80 (383)
223 PF03600 CitMHS: Citrate trans 22.8 1E+03 0.022 26.0 14.9 18 213-230 117-134 (351)
224 TIGR02057 PAPS_reductase phosp 22.1 6.2E+02 0.013 26.3 9.9 33 655-690 26-58 (226)
225 PF03672 UPF0154: Uncharacteri 21.7 3.1E+02 0.0067 22.7 5.7 33 265-300 4-36 (64)
226 TIGR00841 bass bile acid trans 21.7 5.3E+02 0.011 27.8 9.6 102 356-464 14-120 (286)
227 COG1380 Putative effector of m 21.5 7E+02 0.015 23.6 9.9 47 355-402 66-114 (128)
228 PF03652 UPF0081: Uncharacteri 21.5 2.1E+02 0.0045 27.3 5.7 58 586-644 37-97 (135)
229 PRK10696 tRNA 2-thiocytidine b 21.5 2.4E+02 0.0051 29.9 6.7 37 655-691 30-68 (258)
230 TIGR02185 Trep_Strep conserved 21.0 8.6E+02 0.019 24.5 15.3 125 274-404 41-184 (189)
231 PF05982 DUF897: Domain of unk 20.9 5.6E+02 0.012 28.3 9.3 69 381-449 57-125 (327)
232 TIGR03248 galactar-dH20 galact 20.6 4.9E+02 0.011 30.6 9.3 107 665-785 173-297 (507)
233 PRK14561 hypothetical protein; 20.6 2.1E+02 0.0045 29.0 5.8 22 656-677 2-23 (194)
234 PRK01844 hypothetical protein; 20.5 4.9E+02 0.011 22.1 6.7 34 265-301 11-44 (72)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=8.1e-146 Score=1314.28 Aligned_cols=724 Identities=37% Similarity=0.674 Sum_probs=660.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccc-cCCcchHHHHHHHHHHHHHHHH
Q 044119 69 GANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNA-IFHPEEMLLVNTMSIMGGIYFI 147 (816)
Q Consensus 69 l~~~l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~-lfp~~~~~~l~~la~iGl~~ll 147 (816)
++|++|++++|+++++++++++++++||+|||++++||++||++||+++|+++.+.+ +||.++.+.+++++++|++++|
T Consensus 37 l~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillm 116 (832)
T PLN03159 37 LDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFL 116 (832)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999988888 9999888899999999999999
Q ss_pred HHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccC
Q 044119 148 FIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLT 227 (816)
Q Consensus 148 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~ 227 (816)
|++|+|+|++.+||++|+++.+|+.++++|+++|++++++++....+......++++|+++|.||+|+++++|+|+|+++
T Consensus 117 FliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~ 196 (832)
T PLN03159 117 FLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLIN 196 (832)
T ss_pred HHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCccc
Confidence 99999999999999999999999999999999999888877432111222356789999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhh-c-c-c-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 044119 228 SELGQLAISCSILSELLSWMNLILAMIF-K-A-N-NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVA 303 (816)
Q Consensus 228 s~~g~l~ls~a~i~Di~~~vll~~~~~~-~-~-~-~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~ 303 (816)
++.||+++++++++|+++|+++++.... . + . ...++.++..+++++++.+++||++.|+.++++++++.++.++.+
T Consensus 197 s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~ 276 (832)
T PLN03159 197 TELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICL 276 (832)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHH
Confidence 9999999999999999999999544333 2 2 1 345677777788888899999999999999999888888999999
Q ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHH
Q 044119 304 MLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQI 383 (816)
Q Consensus 304 vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ 383 (816)
+++++++++++++.+|+|+++|||++|+++|+. ++++.+.+|++++++++|+|+||+++|+++|+..+.+...|..+++
T Consensus 277 il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~ 355 (832)
T PLN03159 277 ILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVL 355 (832)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHH
Confidence 999999999999999999999999999999984 8999999999999999999999999999999988844345666677
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhh
Q 044119 384 IILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMY 463 (816)
Q Consensus 384 ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~l 463 (816)
++++++++|+++++++++++|+|++|++.+|++|++||+++++++++|++.|+++++.|++++++++++|.+++|++.++
T Consensus 356 liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~l 435 (832)
T PLN03159 356 VIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVV 435 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred cCCCccchhhhhhhhhcccccCCCCCCCCcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCcccccc
Q 044119 464 YDPNSTRLQSSCKLEKRTRTVGTTSMDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAP 543 (816)
Q Consensus 464 y~p~~~~~~~~~~~~~~~rti~~~~~~~e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~ 543 (816)
|||+| ||..| + +|++++.++++|+|||+|+|+++|+++|++|++++++++++|+++|++||+||+||++|++++
T Consensus 436 y~p~r-k~~~~----~-~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~ 509 (832)
T PLN03159 436 YRPAR-RLVGY----K-RRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIV 509 (832)
T ss_pred hCHHh-hhccc----c-ccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceee
Confidence 99999 99999 8 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhc-----ccccchhHHHHHHhc-ccccCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcc--
Q 044119 544 YDAQRRR-----LKENSTDRIMRAVTN-QTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQ-- 615 (816)
Q Consensus 544 ~~~~~~~-----~~~~~~~~i~~af~~-~~~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~-- 615 (816)
|+.+++. ....++|++++||+. ++..+.|+ |+++|+||||++||+|||++|+||++++||+||||+|+.|
T Consensus 510 h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~--v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~ 587 (832)
T PLN03159 510 HNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVS--VQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGG 587 (832)
T ss_pred eecccccccccccccccccHHHHHHHHHHhhcCceE--EEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCC
Confidence 9876431 133568999999999 43335799 9999999999999999999999999999999999999977
Q ss_pred -hhhhh-hHHHHHHHhhcCCCcEEEEecCCCCC-CC-CCCCcceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEE
Q 044119 616 -EIETC-LHQLNLNIQAYAQCTIGILVDSGLPR-SL-SSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKID 691 (816)
Q Consensus 616 -~~~~~-~~~~n~~vl~~ApCsVgIlVdrg~~~-~~-~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 691 (816)
++.+. +|.+|+|||++||||||||||||..+ .+ +.....+||+++|+|||||||||+||+|||+||++++||+||+
T Consensus 588 ~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~ 667 (832)
T PLN03159 588 MEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFI 667 (832)
T ss_pred ccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEE
Confidence 44555 99999999999999999999999764 11 2344578999999999999999999999999999999999999
Q ss_pred eCCCCCc--------------------hhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCChHHHHHHHHhhhcCccEEE
Q 044119 692 FKGNQAE--------------------NECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVI 751 (816)
Q Consensus 692 ~~~~~~~--------------------~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLvi 751 (816)
+.++..+ ++.|+++|+++++|||.++..+++|.|+|++|+|++|++.+||+|+++|||+|
T Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l~~~~~~ydL~i 747 (832)
T PLN03159 668 PGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAIRSMDSAHDLFI 747 (832)
T ss_pred cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHHHHHhhccCcEEE
Confidence 7532111 35688999999999999998888999999999999999999999998999999
Q ss_pred EcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEeeecc
Q 044119 752 VGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTEN 802 (816)
Q Consensus 752 VGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq~~~ 802 (816)
|||+|+.+|++|+||+||+||||||+|||+|||+|| .+++||||||||..
T Consensus 748 VGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~-~~~~SVLVvQQ~~~ 797 (832)
T PLN03159 748 VGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDF-AATVSVLVVQQYVG 797 (832)
T ss_pred EecCCCCCcchhccccccccCCccchhhhHHhcCCC-CCceeEEEEEeecc
Confidence 999998779999999999999999999999999999 99999999999974
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-120 Score=1074.68 Aligned_cols=722 Identities=35% Similarity=0.579 Sum_probs=660.2
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccc-cCCcchHHHHHHHHHHHHHHHH
Q 044119 69 GANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNA-IFHPEEMLLVNTMSIMGGIYFI 147 (816)
Q Consensus 69 l~~~l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~-lfp~~~~~~l~~la~iGl~~ll 147 (816)
++|++|++++|++++++++++++.++||+|||++++++++||++||+.+|.++.+.+ +||.++...+++++.+|+.+++
T Consensus 17 ~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~ 96 (769)
T KOG1650|consen 17 LKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFL 96 (769)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CCC----chHHHHHHHHHhccCcHHHHHHHHHh
Q 044119 148 FIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIP-GVN----KGPFLYFFSVTLAKPFFPVIAHAMNE 222 (816)
Q Consensus 148 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~-~~~----~~~~~l~lg~~ls~Ts~~vv~~iL~e 222 (816)
|+.|+|+|.+.++|++|++..+|+.++++|++.|.++...+..... ... ...+..++..+++.|+||+++++|.|
T Consensus 97 Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~e 176 (769)
T KOG1650|consen 97 FLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAE 176 (769)
T ss_pred HHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999988887754433 111 11267788899999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHhh-c-c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCch
Q 044119 223 LNLLTSELGQLAISCSILSELLSWMNLILAMIF-K-A---NNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVK 297 (816)
Q Consensus 223 l~ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~-~-~---~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~ 297 (816)
+|++++++||+++++++++|+++|.+++..... + . +....|.+...+++++++.+++||.+.|+.+|+|++++.+
T Consensus 177 Lkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~ 256 (769)
T KOG1650|consen 177 LKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVS 256 (769)
T ss_pred hhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccc
Confidence 999999999999999999999999988665554 2 1 2445788888888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhC-hhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchh
Q 044119 298 EIYMVAMLLLPGITGALSDATG-LNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWK 376 (816)
Q Consensus 298 e~~~~~vl~~~~~~~~lae~lG-~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~ 376 (816)
+.|...++..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+.+|+++|+..+ ..
T Consensus 257 ~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i-~~- 334 (769)
T KOG1650|consen 257 DAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRI-NK- 334 (769)
T ss_pred cceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHH-HH-
Confidence 9999999999999999999999 89999999999999999999999999999999999999999999999999998 32
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhH
Q 044119 377 AFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIV 456 (816)
Q Consensus 377 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~ 456 (816)
|......+...+++|+++++.++.++|+|+||++.+|++|++||.+++.+++.+++.++++.+.|++++++++++|.++
T Consensus 335 -~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~ 413 (769)
T KOG1650|consen 335 -WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFIT 413 (769)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhH
Confidence 7777788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcCCCccchhhhhhhhhcccccCCCCCCCCcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCC
Q 044119 457 IPLISMYYDPNSTRLQSSCKLEKRTRTVGTTSMDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGR 536 (816)
Q Consensus 457 ~pli~~ly~p~~~~~~~~~~~~~~~rti~~~~~~~e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r 536 (816)
+|+++.+|||.+ +|..| + +|++++.++++++|+|.|+|+++|++++++++|++.+++++|.++|++|++||.+|
T Consensus 414 ~~~l~~~y~p~~-~~~~y----~-~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~~lhlveL~~~ 487 (769)
T KOG1650|consen 414 PPLLMFLYDPTR-KYHGY----K-KRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVYALHLVELVGR 487 (769)
T ss_pred HHHHHHhcchhh-hcCce----E-eehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCcceeeeeeeecccc
Confidence 999999999999 99999 8 99999999999999999999999999999999999998878999999999999999
Q ss_pred Cccccccchhhhh-c--ccccchhHHHHHHhc-cc-ccCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCC
Q 044119 537 AESLSAPYDAQRR-R--LKENSTDRIMRAVTN-QT-KSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKG 611 (816)
Q Consensus 537 ~s~~~~~~~~~~~-~--~~~~~~~~i~~af~~-~~-~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~ 611 (816)
+.|++++|+.+++ . .....+|++.++|+. +. +...|. ++++|++||+++||||||.+|.++++++|++||||+
T Consensus 488 ~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~--v~~~Ta~s~~~~m~edic~la~~~~~~liilpfhk~ 565 (769)
T KOG1650|consen 488 ATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVM--VRTFTALSPEKLMHEDICTLALDKGVSLIILPFHKH 565 (769)
T ss_pred cchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEE--EEeehhhCChhhchhhhhHHHHhhCCcEEEeehhhh
Confidence 9999999987654 2 334456788889988 44 235699 999999999999999999999999999999999999
Q ss_pred CCcc---hhhhh-hHHHHHHHhhcCCCcEEEEecCCCCCC--CCCCCcceEEEEeccCCcchHHHHHHHHHHhcCCCeEE
Q 044119 612 LEFQ---EIETC-LHQLNLNIQAYAQCTIGILVDSGLPRS--LSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTV 685 (816)
Q Consensus 612 ~~~~---~~~~~-~~~~n~~vl~~ApCsVgIlVdrg~~~~--~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~l 685 (816)
|+.| |+.+. +|++|++|+++||||||||||||..+. .+.....++|+++|+||+||||||+|++||++||++++
T Consensus 566 ~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~rm~~~~~v~l 645 (769)
T KOG1650|consen 566 WSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKRMAENPRVTL 645 (769)
T ss_pred ccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHHHHHHHhhCCceEE
Confidence 9844 56566 999999999999999999999982221 12333678999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCc----hhhhhhhHHHHHHHH-HHhcCCCCceEEE-EEEeCChHHHHHHHHhhhcCccEEEEcccCCCC
Q 044119 686 TVFKIDFKGNQAE----NECERQLDEYVMNEF-RERNAGNACVVCR-EMMVNDSTELMSSIRLIENIYDLVIVGKQRGIG 759 (816)
Q Consensus 686 tvvr~~~~~~~~~----~~~~~~~d~~~l~~~-~~~~~~~~~v~y~-e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~ 759 (816)
||+||+.+++..+ +++++.+|++..+++ +...+.+.++.|. |+.++|+.||..++++++++|||++|||+++.+
T Consensus 646 TVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ivGr~~~~~ 725 (769)
T KOG1650|consen 646 TVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLFIVGRSHGML 725 (769)
T ss_pred EEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccceEEEecccccc
Confidence 9999998644322 467889999999998 6555566678888 699999999999999999999999999999999
Q ss_pred CcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEeeecc
Q 044119 760 SPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTEN 802 (816)
Q Consensus 760 s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq~~~ 802 (816)
++.++|++||+||||||+|||.|+|+|| .++.||||+|||..
T Consensus 726 ~~~t~gl~~W~e~pELg~IGd~las~~~-~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 726 SEATGGLSEWSECPELGVIGDLLASSDF-SSKVSVLVVQQQLY 767 (769)
T ss_pred cchhcCchhcccCccccccCcccccccc-CccceEEEEEeeec
Confidence 9999999999999999999999999999 99999999999965
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=4.3e-46 Score=438.82 Aligned_cols=367 Identities=17% Similarity=0.278 Sum_probs=314.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhcc
Q 044119 75 VFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKM 154 (816)
Q Consensus 75 ~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~ 154 (816)
.+++++.+++.++.++..++||+|+|+++|||++|+++||+++|+++. .+.++.++++|++++||.+|+|+
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~---------~~~i~~laelGvv~LlF~iGLEl 75 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD---------VESILHFAEFGVVLMLFVIGLEL 75 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC---------HHHHHHHHHHHHHHHHHHHHhCc
Confidence 589999999999999999999999999999999999999999998754 56789999999999999999999
Q ss_pred ChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHH
Q 044119 155 DKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLA 234 (816)
Q Consensus 155 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ 234 (816)
|++.+++.+|+++.+|..++++++++++.++++++..+ ..++++|.+++.||++++.++|+|+|+++++.||.+
T Consensus 76 ~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~------~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~ 149 (621)
T PRK03562 76 DPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLRW------QVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSA 149 (621)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 99999999999999999999999999988888776544 688999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--c--c-chHH-HHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 044119 235 ISCSILSELLSWMNLILAMIF--K--A-NNHL-LKTEIT----FCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAM 304 (816)
Q Consensus 235 ls~a~i~Di~~~vll~~~~~~--~--~-~~~~-l~~~l~----~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~v 304 (816)
++.++++|+++|+++++.... . + +... +..++. .+++++++.++.+|+++|+.++ +.+|.+..++
T Consensus 150 l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-----~~~e~~~~~~ 224 (621)
T PRK03562 150 FAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-----GLREVFTAVA 224 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHH
Confidence 999999999999888443221 1 1 1111 222222 2222333445566666666554 2467888888
Q ss_pred HHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHH
Q 044119 305 LLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQII 384 (816)
Q Consensus 305 l~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~i 384 (816)
++++++++++++.+|+|+++|||++|+++++. ++++++.+++++| .++|+|+||+++||++|+..+ . ..|+.++.+
T Consensus 225 l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l-~-~~~~~il~~ 300 (621)
T PRK03562 225 LFLVFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTL-L-ENPLRILIL 300 (621)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHH-H-HHHHHHHHH
Confidence 89999999999999999999999999999986 8899999999999 799999999999999999887 2 234445555
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhc
Q 044119 385 ILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYY 464 (816)
Q Consensus 385 i~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly 464 (816)
+++.+++|++++++.++++|+++++++.+|++|+++|+++++++.++.+.|+++++.|+.+++++++ |++++|++..+|
T Consensus 301 ~~~~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l~~~~ 379 (621)
T PRK03562 301 LLGFLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLLLVLL 379 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhh
Confidence 6678899999999999999999999999999999999999999999999999999999999987766 888888887777
Q ss_pred CC
Q 044119 465 DP 466 (816)
Q Consensus 465 ~p 466 (816)
++
T Consensus 380 ~~ 381 (621)
T PRK03562 380 DR 381 (621)
T ss_pred hH
Confidence 54
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=431.20 Aligned_cols=369 Identities=18% Similarity=0.251 Sum_probs=314.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccC
Q 044119 76 FLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMD 155 (816)
Q Consensus 76 ~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d 155 (816)
++..+.++++++.+++.++||+|+|.+++||++|+++||+++|.++. .+.++.++++|++++||.+|+|+|
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~---------~~~~~~la~lGli~llF~~Gle~d 77 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD---------TKLAPELAELGVILLMFGVGLHFS 77 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc---------hHHHHHHHHHHHHHHHHHhHhcCC
Confidence 45677888999999999999999999999999999999999998653 467899999999999999999999
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHH
Q 044119 156 KARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAI 235 (816)
Q Consensus 156 ~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~l 235 (816)
++.+++.++..+..++.++++|+++++++++.++..+ ..++++|++++.||+++++++|+|+|+++++.||+++
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l 151 (558)
T PRK10669 78 LKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWSL------MTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAI 151 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHH
Confidence 9999999888888888899999999888887776433 6788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--hh--ccc----h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHH
Q 044119 236 SCSILSELLSWMNLILAM--IF--KAN----N----HLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVA 303 (816)
Q Consensus 236 s~a~i~Di~~~vll~~~~--~~--~~~----~----~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~ 303 (816)
++++++|+++|+++.+.. .. .++ . ...+.++..++++++..++.|++..|+.++.++.+ .+|.+...
T Consensus 152 ~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~ 230 (558)
T PRK10669 152 GWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLS 230 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHH
Confidence 999999999998884321 11 111 1 12344556666777788889999999999887653 57788887
Q ss_pred HHHHHHHHHHH-HHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHH
Q 044119 304 MLLLPGITGAL-SDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQ 382 (816)
Q Consensus 304 vl~~~~~~~~l-ae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~ 382 (816)
+++.++++++. ++.+|+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+++|+++|+..+. ..+...+
T Consensus 231 ~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~--~~~~~~~ 306 (558)
T PRK10669 231 VLALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILI--QQPLAVL 306 (558)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHH--HHHHHHH
Confidence 88888877765 5999999999999999999986 6788888777777 7899999999999999998772 2333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHh
Q 044119 383 IIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISM 462 (816)
Q Consensus 383 ~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ 462 (816)
.++++.+++|++++++.++++|+++|+++.+|+.|++||+++++++..+++.|+++++.|+++++++++++.++|.+.++
T Consensus 307 ~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 307 ATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999999999999999999999999999999999999999999999999866655555565
Q ss_pred hc
Q 044119 463 YY 464 (816)
Q Consensus 463 ly 464 (816)
..
T Consensus 387 ~~ 388 (558)
T PRK10669 387 LE 388 (558)
T ss_pred hh
Confidence 54
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=3.4e-45 Score=430.60 Aligned_cols=367 Identities=19% Similarity=0.303 Sum_probs=311.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhcc
Q 044119 75 VFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKM 154 (816)
Q Consensus 75 ~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~ 154 (816)
.++.++.+++.++.++..+++|+|+|++++|+++|+++||+++|+++. .+.+..++++|++++||.+|+|+
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~---------~~~i~~laelGvv~LLF~iGLel 75 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD---------VDEILHFSELGVVFLMFIIGLEL 75 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc---------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 367789999999999999999999999999999999999999998754 45688999999999999999999
Q ss_pred ChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHH
Q 044119 155 DKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLA 234 (816)
Q Consensus 155 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ 234 (816)
|++.+++.+|+++.+|..++++|+++++.++++++..+ ..++++|++++.||++++.++|+|+|+++++.||++
T Consensus 76 ~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~~------~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~ 149 (601)
T PRK03659 76 NPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFSW------QAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLG 149 (601)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCH------HHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHH
Confidence 99999999999999999999999988877776654333 778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-cc--ch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHH
Q 044119 235 ISCSILSELLSWMNLILAMIF-KA--NN-HLL---KTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLL 307 (816)
Q Consensus 235 ls~a~i~Di~~~vll~~~~~~-~~--~~-~~l---~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~ 307 (816)
++..+++|+.+++++++.... +. +. .+. +.++..+++++++.++.+|+++|+.+. +.+|.++..++++
T Consensus 150 l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~l~~ 224 (601)
T PRK03659 150 FSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAAS-----GVREVFTAAALLL 224 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHH
Confidence 999999999999888443222 11 11 111 112222222333445556666655443 3467888888999
Q ss_pred HHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHH
Q 044119 308 PGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILA 387 (816)
Q Consensus 308 ~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~ 387 (816)
+++++++++.+|+|+++|||++|+++++. ++++++.++++++ .++|+|+||+++||++|+..+ ...|+.++.++++
T Consensus 225 vl~~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l--~~~~~~il~~~~~ 300 (601)
T PRK03659 225 VLGSALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVL--YTHLLWVLISVVV 300 (601)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHH--HHhHHHHHHHHHH
Confidence 99999999999999999999999999996 7899999999999 799999999999999999887 2345556666677
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhcCC
Q 044119 388 AYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYDP 466 (816)
Q Consensus 388 ~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly~p 466 (816)
.+++|++++++.++++|+++++++.+|+.|+++|+++++++..+.+.|+++++.|+.++.++++ |++++|++..+|+|
T Consensus 301 ~l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~~~~ 378 (601)
T PRK03659 301 LVAVKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKLIDK 378 (601)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhHH
Confidence 8899999999999999999999999999999999999999999999999999999999887777 66788888877765
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3e-43 Score=393.80 Aligned_cols=375 Identities=22% Similarity=0.364 Sum_probs=318.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhh
Q 044119 73 FPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTL 152 (816)
Q Consensus 73 l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gl 152 (816)
....+.|+.++++++.+++.++||+|+|+++||+++|+++||..++... +..+.++.++++|++++||.+|+
T Consensus 4 ~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~--------~~~~~i~~laelGvi~LlF~~GL 75 (397)
T COG0475 4 LSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLII--------ESSEIIELLAELGVVFLLFLIGL 75 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccC--------CchHHHHHHHHHhHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999995554432 34789999999999999999999
Q ss_pred ccChhHHhhhhhh-HHHHHHHHHHHHHHHHHHHHHH-HhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChh
Q 044119 153 KMDKARILKTVRN-GWSVSVTCLVVPFTISSFLTSL-LHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSEL 230 (816)
Q Consensus 153 e~d~~~l~~~~~~-~~~ia~~~~l~p~~lg~~~~~~-l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 230 (816)
|+|++.+||++|+ +...+..++..|++++....+. ++..+ ..++++|.+++.||.++++++++|+|..+++.
T Consensus 76 E~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~------~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~ 149 (397)
T COG0475 76 EFDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLSL------IAALFLGAALALSSTAIVLKILMELGLLKTRE 149 (397)
T ss_pred CcCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 9999999999999 8888899999998888665553 44333 67999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cc-c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 044119 231 GQLAISCSILSELLSWMNLILAMIF-KA-N---NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAML 305 (816)
Q Consensus 231 g~l~ls~a~i~Di~~~vll~~~~~~-~~-~---~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl 305 (816)
|++++++++++|+.+++++.+.... ++ + ..++..++...++.++..+..|++.+++.|+..+. +.+|..+.+++
T Consensus 150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l 228 (397)
T COG0475 150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVL 228 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHH
Confidence 9999999999999999999554443 22 2 22455555666666666666677777777776543 35788999999
Q ss_pred HHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHH
Q 044119 306 LLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIII 385 (816)
Q Consensus 306 ~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii 385 (816)
.+++.+++++|.+|+|+++|||++|+++++....+++++++++++.+++|+|+||+.+|+++|+..+ . ..+..+..++
T Consensus 229 ~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l-~-~~~~~~l~~~ 306 (397)
T COG0475 229 LLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVL-L-ENLLLILLLV 306 (397)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHH-h-ccHHHHHHHH
Confidence 9999999999999999999999999999998433379999999997779999999999999999998 3 3444477778
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhcC
Q 044119 386 LAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYD 465 (816)
Q Consensus 386 ~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly~ 465 (816)
.+..++|++++++.++..|.+.++++..|+.+.++|+++++.++.+.. +.++++.+...+.+++++|.+.+++.+.+++
T Consensus 307 ~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~ 385 (397)
T COG0475 307 ALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLK 385 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999988877 5788888888888877766666656665554
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.5e-38 Score=373.13 Aligned_cols=376 Identities=13% Similarity=0.107 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhh
Q 044119 73 FPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTL 152 (816)
Q Consensus 73 l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gl 152 (816)
+..++++++++++++.+++.+++|+++|.+++++++|+++||+++|.++. ++.+..+.++++|+++++|.+|+
T Consensus 4 ~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~-------~~~~~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 4 INSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQF-------DNYPLAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCccc-------CcHHHHHHHHHHHHHHHHHcCcc
Confidence 44678999999999999999999999999999999999999999997542 23578899999999999999999
Q ss_pred ccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccc-cCChh
Q 044119 153 KMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSL-LHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNL-LTSEL 230 (816)
Q Consensus 153 e~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~-l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l-l~s~~ 230 (816)
|+|++.+|+.+++++.+++.++++|++++...+++ ++.. +..++++|+++++||++++.++++|+|+ +++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~------~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v 150 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGLD------WLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERV 150 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHhhhhccCchHHHHHHHhccCCCcchhH
Confidence 99999999999999999999999999886555544 4433 3789999999999999999999999996 79999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh--ccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q 044119 231 GQLAISCSILSELLSWMNLILAMIF--KAN----NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAM 304 (816)
Q Consensus 231 g~l~ls~a~i~Di~~~vll~~~~~~--~~~----~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~v 304 (816)
++++.+++.+||.++++++.+.... .+. ...+..++..+++.++.+++.++++.|+.+|... ..++.+..++
T Consensus 151 ~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~--~~~~~~~i~~ 228 (562)
T PRK05326 151 ASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL--PAEGLYPILV 228 (562)
T ss_pred HhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhhHHHHHH
Confidence 9999999999999999888433322 111 1223444555566667778888999999998743 1245678888
Q ss_pred HHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHH
Q 044119 305 LLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQII 384 (816)
Q Consensus 305 l~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~i 384 (816)
+.++++++++++.+|.|+++|+|++|++++|.++..+...+++.+...+++.|+||+++|+.+|+..+ ....+...++.
T Consensus 229 l~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l-~~~~~~~l~i~ 307 (562)
T PRK05326 229 LAGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRL-LDIALPALLLA 307 (562)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999999998544444445555555889999999999999999887 32223333334
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccC-cchhhHHHHHHHHHHHhHhHHHHhh
Q 044119 385 ILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVD-DQTVTTIMLSHTAVTAIVIPLISMY 463 (816)
Q Consensus 385 i~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~-~~~f~~lvl~vll~t~i~~pli~~l 463 (816)
+++.+++|+++++++.+.+++++||++.+||. ++||.++++++.++...++.+ +..|+++.+++++++.+.++.+..+
T Consensus 308 ~~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~ 386 (562)
T PRK05326 308 LFLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWA 386 (562)
T ss_pred HHHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHH
Confidence 45677899999999999999999999999996 899999999999999999886 4567887778888777777776665
Q ss_pred cC
Q 044119 464 YD 465 (816)
Q Consensus 464 y~ 465 (816)
.|
T Consensus 387 a~ 388 (562)
T PRK05326 387 AR 388 (562)
T ss_pred HH
Confidence 53
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.3e-34 Score=310.59 Aligned_cols=266 Identities=24% Similarity=0.363 Sum_probs=230.0
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhh
Q 044119 85 LISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVR 164 (816)
Q Consensus 85 ~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~ 164 (816)
+++.+++.++||+|+|++++++++|+++||+++|.+++ .+.++.++++|+.+++|.+|+|+|++.+||++|
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~---------~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~ 72 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISN---------VEGVNHLAEFGVILLMFLIGLELDLERLWKLRK 72 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCC---------hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 46678899999999999999999999999999997654 468999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHHHHHHHHH
Q 044119 165 NGWSVSVTCLVVP-FTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSEL 243 (816)
Q Consensus 165 ~~~~ia~~~~l~p-~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di 243 (816)
+++.+++.++++| ++++..++++++..+ ..++++|++++.||++++.++++|+|+.+++.|+++++++++||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~ 146 (273)
T TIGR00932 73 AAFGVGVLQVLVPGVLLGLLLGHLLGLAL------GAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDI 146 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCH------HHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHH
Confidence 9999999999999 667776776665443 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh-cc--c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 044119 244 LSWMNLILAMIF-KA--N--NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDAT 318 (816)
Q Consensus 244 ~~~vll~~~~~~-~~--~--~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~~~~~~lae~l 318 (816)
++++++.+.... ++ + ....+.+...+++.++.+++.++...|+.++.++.++ .|.+..+++.+++..+++++.+
T Consensus 147 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~ 225 (273)
T TIGR00932 147 AVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLL 225 (273)
T ss_pred HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHh
Confidence 999998444333 21 1 2333444455555566677888899999998776533 5788889999999999999999
Q ss_pred ChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccc
Q 044119 319 GLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFN 368 (816)
Q Consensus 319 G~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~id 368 (816)
|.|+++|||++|+++++. +.++++.++++++. ++|.|+||+++|+++|
T Consensus 226 g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 226 GLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred CCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 999999999999999997 55788999999997 9999999999999986
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=4.5e-39 Score=361.40 Aligned_cols=368 Identities=20% Similarity=0.367 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhh
Q 044119 82 LFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILK 161 (816)
Q Consensus 82 lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~ 161 (816)
++++++.+.+.++||+++|.+++++++|+++||.+++..+. + ...++.++++|+.+++|.+|+|+|.+.+||
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~-------~-~~~~~~l~~i~l~~llF~~G~~~d~~~l~~ 74 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEP-------D-NPSFELLAEIGLAFLLFEAGLELDIKELRR 74 (380)
T ss_dssp -----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccc-------h-hhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 34555666777899999999999999999999998886442 1 378889999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHHH---HhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHHH
Q 044119 162 TVRNGWSVSVTCLVVPFTI-SSFLTSL---LHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISC 237 (816)
Q Consensus 162 ~~~~~~~ia~~~~l~p~~l-g~~~~~~---l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~ 237 (816)
++++++.+++.++++|+++ ++.++++ .+.. +..++++|.+++.||++++.++++|.+..+++.+++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~ 148 (380)
T PF00999_consen 75 NWRRALALGLVGFLLPFILVGFLLSFFLFILGLS------WAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSE 148 (380)
T ss_dssp ---------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTT
T ss_pred ccccccccccceeeehhhHHHHHHHHhhccchhh------hHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhh
Confidence 9999999999999999999 6666643 2222 3778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-cc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCchhHHHHHHHHHHHHHHHH
Q 044119 238 SILSELLSWMNLILAMIF-KA-NNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEG-KAVKEIYMVAMLLLPGITGAL 314 (816)
Q Consensus 238 a~i~Di~~~vll~~~~~~-~~-~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~-~~~~e~~~~~vl~~~~~~~~l 314 (816)
+++||+++++++.+.... +. .....+.....++..+....+.+....|+.++..+. ++.++.+..+++.+++..+++
T Consensus 149 ~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (380)
T PF00999_consen 149 SVINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGL 228 (380)
T ss_dssp TTTTTTTTTTTT--------------------------------------------------------------------
T ss_pred chhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccc
Confidence 999999999888332222 11 111111222222222233333334444444333222 245678888999999999999
Q ss_pred HHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhccccccccc-chhhHHHHHHHHHHHHHHHH
Q 044119 315 SDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSIT-NWKAFAILQIIILAAYFARV 393 (816)
Q Consensus 315 ae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~-~~~~~~~~~~ii~~~~~~K~ 393 (816)
+|.+|.++++|+|++|+++++. +.++++.++++++.++++.|+||+.+|+++|++.+. +...+...+.+++..+++|+
T Consensus 229 a~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~ 307 (380)
T PF00999_consen 229 AEILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKF 307 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhh
Confidence 9999999999999999999965 777789999999977999999999999999988872 24456666667777778999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhc
Q 044119 394 AAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYY 464 (816)
Q Consensus 394 ~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly 464 (816)
+++++.+++.|+++||++.+|+.|++||+++++++..+.+.|.++++.+++++.++++++.+.++.++.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 308 IGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp ---------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred ceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999997666666666554
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.9e-32 Score=273.17 Aligned_cols=373 Identities=19% Similarity=0.281 Sum_probs=303.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHh
Q 044119 71 NAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIV 150 (816)
Q Consensus 71 ~~l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~ 150 (816)
+..|+ +..+..-+.++.+++.+..|+|+|+.+||+++|++.||.--|...+ ......++++|++++||-+
T Consensus 3 h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad---------~~La~~LAelGViLLmFgv 72 (408)
T COG4651 3 HDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVAD---------QTLAPELAELGVILLMFGV 72 (408)
T ss_pred CCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccc---------hhHHHHHHHhhHHHHHHhc
Confidence 33443 4445566778889999999999999999999999999987777653 4556689999999999999
Q ss_pred hhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChh
Q 044119 151 TLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSEL 230 (816)
Q Consensus 151 Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~ 230 (816)
|+++.++++...+.-++--++.++.+...+|.++++.++.++ ...+.+|.++|..|..++.|.|+|.++.+++.
T Consensus 73 GLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~------~~glvfGlaLS~aSTVvllraLqEr~lidt~r 146 (408)
T COG4651 73 GLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF------GTGIVFGLALSVASTVVLLRALEERQLIDTQR 146 (408)
T ss_pred chheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc------ccceeeeehhhhHHHHHHHHHHHHhccccccC
Confidence 999999999876655555667777777777777777776554 45678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--Hhh--c-c--c-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchh
Q 044119 231 GQLAISCSILSELLSWMNLILA--MIF--K-A--N-----NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKE 298 (816)
Q Consensus 231 g~l~ls~a~i~Di~~~vll~~~--~~~--~-~--~-----~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e 298 (816)
||++++--++.|+..++.++.. .+. + . + ....+.+.....|+.++.++.|++..|+..+.... ..+|
T Consensus 147 G~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrE 225 (408)
T COG4651 147 GRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRE 225 (408)
T ss_pred ceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHH
Confidence 9999999999999988777322 221 1 1 1 12234566788899999999999999999886543 3578
Q ss_pred HHHHHHHHHHHHHHHHH-HHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhh
Q 044119 299 IYMVAMLLLPGITGALS-DATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKA 377 (816)
Q Consensus 299 ~~~~~vl~~~~~~~~la-e~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~ 377 (816)
.+...++..+++.++-+ +.+|+++.+|||++|+++.+. .+.++..+..-++ ++.|.-+||+.+||..|...+ -.+.
T Consensus 226 lf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l-~~~p 302 (408)
T COG4651 226 LFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMIL-IQQP 302 (408)
T ss_pred HHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHh-hcch
Confidence 88889999988777665 789999999999999999987 7777887777777 899999999999999998776 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHh
Q 044119 378 FAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVI 457 (816)
Q Consensus 378 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~ 457 (816)
+ .++....+..++|-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++++..-..++...++ +++..
T Consensus 303 l-~vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sIl~n 380 (408)
T COG4651 303 L-AVLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SILLN 380 (408)
T ss_pred H-HHHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HHHHh
Confidence 3 344455566789999999999999999999999999999999999999999999999996655554444444 88889
Q ss_pred HHHHhhcC
Q 044119 458 PLISMYYD 465 (816)
Q Consensus 458 pli~~ly~ 465 (816)
|+.....+
T Consensus 381 Pllf~~~d 388 (408)
T COG4651 381 PLLFALLD 388 (408)
T ss_pred HHHHHHHH
Confidence 98876554
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.96 E-value=1.7e-26 Score=268.68 Aligned_cols=353 Identities=14% Similarity=0.190 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-ccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhc
Q 044119 75 VFLLQISLFSLISQLLHLALK-RLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLK 153 (816)
Q Consensus 75 ~~llqi~lil~~~~l~~~ll~-rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle 153 (816)
+.++-++..+++..++..+++ |+.+|..+.++++|+++||.++++++... +.......++ ++++++.+.+|.+|++
T Consensus 13 l~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~--~g~~d~i~le-IteIvL~I~LFa~Gl~ 89 (810)
T TIGR00844 13 VAYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS--WGNTDSITLE-ISRILLCLQVFAVSVE 89 (810)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh--cccchHHHHH-HHHHHHHHHHHHHHHh
Confidence 344455555555555555555 99999999999999999999988654210 0000123444 9999999999999999
Q ss_pred cChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHh---ccccCChh
Q 044119 154 MDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNE---LNLLTSEL 230 (816)
Q Consensus 154 ~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~e---l~ll~s~~ 230 (816)
++.+.+++.|+..+.+++.++.+++++++++++++...++ +..++++|+++++|++.....+++. .+ ++.++
T Consensus 90 L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~----~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rL 164 (810)
T TIGR00844 90 LPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLN----FPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHL 164 (810)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHH
Confidence 9999999999999999999999999999988887732221 3789999999999998877777762 23 67889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hh-c--cc---hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-chhHH
Q 044119 231 GQLAISCSILSELLSWMNLILAM--IF-K--AN---NHL-LKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKA-VKEIY 300 (816)
Q Consensus 231 g~l~ls~a~i~Di~~~vll~~~~--~~-~--~~---~~~-l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~-~~e~~ 300 (816)
..++.+++.+||.++++++.+++ .. . ++ ..+ +..++..+++.++++++++.+..|+.++..+... ..+.+
T Consensus 165 R~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esf 244 (810)
T TIGR00844 165 RNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESF 244 (810)
T ss_pred HhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 99999999999999998874332 21 1 11 112 2333444444445555555555555544321111 23456
Q ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhH-HHHHhHHHHHHHHHHHHHHHhhcccccccccc----h
Q 044119 301 MVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSA-VVKKSEIIMENIFMPFFYIHIGQLFNVYSITN----W 375 (816)
Q Consensus 301 ~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~-l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~----~ 375 (816)
+.+.++++++++.+++.+|.++++++|++|+++.+...+.+. -...+......++..++|+++|+.+....+.. .
T Consensus 245 la~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~ 324 (810)
T TIGR00844 245 LAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGL 324 (810)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhH
Confidence 677788888889999999999999999999999986433222 12234455577899999999999998766521 1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhHHHHHHHHHHHHhhhccc
Q 044119 376 KAFAILQIIILAAYFARVAAIFLSLIFY--KISIRNAILFGLILNIKGVIELLLLTEWRTHKY 436 (816)
Q Consensus 376 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~ 436 (816)
..|..+++.+++.++.|+.++++...+. ..+|+|++++||. ++||..++.++.++++.+.
T Consensus 325 ~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWF-GpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 325 DVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHF-GPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheee-ccccHHHHHHHHHHHHhhh
Confidence 3455566666777788988888765443 4689999999998 9999999999999987765
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.96 E-value=3e-26 Score=265.86 Aligned_cols=366 Identities=12% Similarity=0.105 Sum_probs=255.7
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHh
Q 044119 81 SLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARIL 160 (816)
Q Consensus 81 ~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~ 160 (816)
..+++.+.....+++|+++|.+++++++|+++||..++.... + + . +.+..+++..++|..|+++|++.++
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~----~--~-~---~~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVP----L--D-R---EIVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCC----C--C-H---HHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 344555566778899999999999999999999864432111 1 1 1 2334589999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHHHHHH
Q 044119 161 KTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSIL 240 (816)
Q Consensus 161 ~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i 240 (816)
|+++.++.+++.++++|++++....+++... .+..++++|+++|+||++++.+++++.+ .++++.+++.+++++
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~~~l-----~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESll 147 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWILGI-----PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLL 147 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhh
Confidence 9999999999999999999877776654221 1478999999999999999999999987 578899999999999
Q ss_pred HHHHHHHHHHHHHhh--ccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHH
Q 044119 241 SELLSWMNLILAMIF--KAN----NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGAL 314 (816)
Q Consensus 241 ~Di~~~vll~~~~~~--~~~----~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~~~~~~l 314 (816)
||..+++++.++... +++ ......++..++..++.++++..+..|+.++..+. +.....+++++.++++++
T Consensus 148 ND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~l 224 (525)
T TIGR00831 148 NDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLL 224 (525)
T ss_pred cchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHH
Confidence 999999999443322 222 22233333333444455555666666676554322 345677888899999999
Q ss_pred HHHhChhHHHHHHHHhhhccCCCCc---hhHH---HHHhHHHHHHHHHHHHHHHhhcccccccccchh----hH---HH-
Q 044119 315 SDATGLNFMSGAVLTGLVVPAGPPL---GSAV---VKKSEIIMENIFMPFFYIHIGQLFNVYSITNWK----AF---AI- 380 (816)
Q Consensus 315 ae~lG~~~ilGaflaGL~i~~~~~~---~~~l---~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~----~~---~~- 380 (816)
+|.+|.|+++++|++|+++++..+. ..+. .+.+......++.+++|+++|+.+.......+. .+ ..
T Consensus 225 Ae~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~ 304 (525)
T TIGR00831 225 AERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILA 304 (525)
T ss_pred HHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence 9999999999999999999986433 1111 223333447889999999999998742110010 01 00
Q ss_pred ----HHHHHHHHHHHHHHHHHHHH--HH-----hCCChHHHHHHHHHHhHHHHHHHHHHHHhh---hcc-------ccCc
Q 044119 381 ----LQIIILAAYFARVAAIFLSL--IF-----YKISIRNAILFGLILNIKGVIELLLLTEWR---THK-------YVDD 439 (816)
Q Consensus 381 ----~~~ii~~~~~~K~~~~~l~~--~~-----~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~---~~~-------~i~~ 439 (816)
.+++.......|++.++... ++ .+++||+.+.++|. +.||.++++++..-- +.+ .+-.
T Consensus 305 ~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~ 383 (525)
T TIGR00831 305 LFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALALSFPNQLLSGMAFPARYELVF 383 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHHHccccccCCCCCchHHHHHH
Confidence 11222223345665443321 11 25789999999998 999999998775321 111 1222
Q ss_pred chhhHHHHHHHHHHHhHhHHHHhhcCC
Q 044119 440 QTVTTIMLSHTAVTAIVIPLISMYYDP 466 (816)
Q Consensus 440 ~~f~~lvl~vll~t~i~~pli~~ly~p 466 (816)
-+|.++++++++++...+|+++++--+
T Consensus 384 ~~~~vVl~TllvqG~tlp~l~r~l~~~ 410 (525)
T TIGR00831 384 LAAGVILFSLLVQGISLPIFVKRKFVS 410 (525)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcCCC
Confidence 346677778888888888888887633
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-23 Score=236.42 Aligned_cols=378 Identities=15% Similarity=0.146 Sum_probs=286.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhcc
Q 044119 75 VFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKM 154 (816)
Q Consensus 75 ~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~ 154 (816)
..++++.+++.+..+...+.+|++.|.+...++.|++.||.+++..+.- ....-+.+..+++..++|..|+++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~-------~~~~~el~~~l~l~ilLf~~g~~l 78 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPD-------LELDPELFLVLFLAILLFAGGLEL 78 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhcccccc-------ccCChHHHHHHHHHHHHHHhHhcC
Confidence 4678888898999999999999999999999999999999888765421 111223333899999999999999
Q ss_pred ChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHH
Q 044119 155 DKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLA 234 (816)
Q Consensus 155 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ 234 (816)
|.+.++|+++..+.+++.+++++.+......+++.+.+ .+..++.+|+++|+|++.++.++.++.+ .+.++.++.
T Consensus 79 ~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i----~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL 153 (429)
T COG0025 79 DLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGI----PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTIL 153 (429)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHH
Confidence 99999999999999999999999998888888774332 2478999999999999999999999966 688999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--ccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CchhHHHHHHHHH
Q 044119 235 ISCSILSELLSWMNLILAMIF--KAN----NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGK-AVKEIYMVAMLLL 307 (816)
Q Consensus 235 ls~a~i~Di~~~vll~~~~~~--~~~----~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~-~~~e~~~~~vl~~ 307 (816)
.+++++||..+++++.++... +++ ......++..++..+.++++.+.+..|+.++....+ ........+.+..
T Consensus 154 ~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~ 233 (429)
T COG0025 154 EGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLL 233 (429)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence 999999999999999444333 222 122233333333333444444444444444432210 1244667889999
Q ss_pred HHHHHHHHHHhChhHHHHHHHHhhhccC-----CCCch-hHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHH
Q 044119 308 PGITGALSDATGLNFMSGAVLTGLVVPA-----GPPLG-SAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAIL 381 (816)
Q Consensus 308 ~~~~~~lae~lG~~~ilGaflaGL~i~~-----~~~~~-~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~ 381 (816)
.+..+.++|.+|.+++++++++|++..+ ..+.. +...+.+......++.-+.|++.|++++.... ....+...
T Consensus 234 ~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~-~~~~~~~~ 312 (429)
T COG0025 234 AFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLL-LALGLLGL 312 (429)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHhhHHHH
Confidence 9999999999999999999999997741 11211 22333344445888999999999999998877 33345667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC------CChHHHHHHHHHHhHHHHHHHHHHHHhhhc------cccCcchhhHHHHHH
Q 044119 382 QIIILAAYFARVAAIFLSLIFYK------ISIRNAILFGLILNIKGVIELLLLTEWRTH------KYVDDQTVTTIMLSH 449 (816)
Q Consensus 382 ~~ii~~~~~~K~~~~~l~~~~~~------~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~------~~i~~~~f~~lvl~v 449 (816)
+++.+..+++|+++++...+..+ .+++|+++++|. ++||.++++++...... ..+..-.+.++++++
T Consensus 313 l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl 391 (429)
T COG0025 313 LVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIPLELPGPARELILFIVFLVILFSL 391 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHH
Confidence 77888888999999999998853 799999999998 99999999988765422 123334566777777
Q ss_pred HHHHHhHhHHHHhhcCC
Q 044119 450 TAVTAIVIPLISMYYDP 466 (816)
Q Consensus 450 ll~t~i~~pli~~ly~p 466 (816)
++.+...+|+.++....
T Consensus 392 ~v~g~t~~~l~~~~~~~ 408 (429)
T COG0025 392 LVQGLTLPPLAKKLEVS 408 (429)
T ss_pred HHHhhhHHHHHHHhccC
Confidence 78777778888776643
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.92 E-value=8.3e-23 Score=217.78 Aligned_cols=361 Identities=13% Similarity=0.121 Sum_probs=297.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhh
Q 044119 72 AFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVT 151 (816)
Q Consensus 72 ~l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~G 151 (816)
+...+++--.++++++.+.+.++.|+|.|..+-.+..|++.|.-++|.++. ++.+.-..++++++++++|-.|
T Consensus 4 t~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~f-------dNy~~Ay~vg~lALaiILfdgG 76 (574)
T COG3263 4 TINLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEF-------DNYPFAYMVGNLALAIILFDGG 76 (574)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCccccccc-------CccHHHHHHHHHHHHHHhhcCc
Confidence 344455556678888999999999999999999999999999999997763 4578889999999999999999
Q ss_pred hccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhH
Q 044119 152 LKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELG 231 (816)
Q Consensus 152 le~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g 231 (816)
+.++++.+|...++++.++..|++++-.+....++++.+.. |.+.+++|+++..|+.+.+..+|.+.+ +|.+++
T Consensus 77 ~~T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~-----wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~ 150 (574)
T COG3263 77 FGTQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNLD-----WLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVA 150 (574)
T ss_pred cCCcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHhhccccHHHHHHHHccCC-hhhhhh
Confidence 99999999999999999999999999888777776664432 389999999999999999999998888 688999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHhh-c-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHH
Q 044119 232 QLAISCSILSELLSWMNLIL--AMIF-K-AN--NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAML 305 (816)
Q Consensus 232 ~l~ls~a~i~Di~~~vll~~--~~~~-~-~~--~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl 305 (816)
.+..-++--||..++++.+. .+.. + ++ ...+..++..+++.++.++....+..|+++|..- .+..|..+++
T Consensus 151 stLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nL---d~GL~pil~l 227 (574)
T COG3263 151 STLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINL---DSGLYPILAL 227 (574)
T ss_pred hhEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcc---ccchhHHHHH
Confidence 99999999999999988732 2222 2 22 2333446677778888888899999999999732 2457888999
Q ss_pred HHHHHHHHHHHHhChhHHHHHHHHhhhccCCCC-chhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHH
Q 044119 306 LLPGITGALSDATGLNFMSGAVLTGLVVPAGPP-LGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQII 384 (816)
Q Consensus 306 ~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~-~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~i 384 (816)
...+..+.+++.+|.|++++.+++|+.+.|.+- -++.+.+..+-+ .++..-+.|...|+....+.+ -.-....+++.
T Consensus 228 a~~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql-~~iavPailL~ 305 (574)
T COG3263 228 AGGLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQL-LPIAIPAILLS 305 (574)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhh-hHhhHHHHHHH
Confidence 999999999999999999999999999999842 345667777777 788888889999999998887 22344456666
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcch-hhHHHHHHHH
Q 044119 385 ILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQT-VTTIMLSHTA 451 (816)
Q Consensus 385 i~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~-f~~lvl~vll 451 (816)
+...+++|.+++|+...-++++++|+++++|. +-||.+.++++....-.|.-+.+. |++..+.+++
T Consensus 306 l~mifvaRP~aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~l~FNvAF~VVLv 372 (574)
T COG3263 306 LWMIFVARPLAVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLV 372 (574)
T ss_pred HHHHHHHhHHHHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccceEEeehhHHHHHH
Confidence 77788999999999999999999999999997 999999999999888777655543 4444444444
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.91 E-value=7.9e-22 Score=228.93 Aligned_cols=370 Identities=9% Similarity=0.093 Sum_probs=255.7
Q ss_pred HHHHHHHHHHHH-hcc-CCChhHHHHHHHHhhccccccccccccc-cCCcchHHHHHHHHHHHHHHHHHHhhhccChhHH
Q 044119 83 FSLISQLLHLAL-KRL-KQPKVVCNVLAGIILGPSVLGHFERWNA-IFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARI 159 (816)
Q Consensus 83 il~~~~l~~~ll-~rl-~~P~iv~~IlaGIilGP~~lg~~~~~~~-lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l 159 (816)
+..++.+...+. |+. ++|..+..++.|+++|+...+.. .... -+. -+.+-.+.+-.++|.+|+++|.+.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~-~~~~~~l~------~~lf~~~~LPpIlFe~g~~l~~~~f 89 (559)
T TIGR00840 17 LASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASP-HIDPPTLD------SSYFFLYLLPPIVLDAGYFMPQRNF 89 (559)
T ss_pred HHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCC-CCccCCcC------HHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 333334444444 344 49999999999999998643321 1111 111 2445556788899999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCC---CCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHH
Q 044119 160 LKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIP---GVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAIS 236 (816)
Q Consensus 160 ~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~---~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls 236 (816)
+++.+..+.+++.|++++.++.....+++..... ..-.+..++++|+++|+|++..+..++++.+ .+.++-.++.+
T Consensus 90 ~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~g 168 (559)
T TIGR00840 90 FENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFG 168 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheeh
Confidence 9999999999999999999887777665432111 0113578999999999999999999999998 58899999999
Q ss_pred HHHHHHHHHHHHHHHHHhh-c--c-c---hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHH
Q 044119 237 CSILSELLSWMNLILAMIF-K--A-N---NHLL---KTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLL 306 (816)
Q Consensus 237 ~a~i~Di~~~vll~~~~~~-~--~-~---~~~l---~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~ 306 (816)
++++||.++++++.++... . + . .... ..+....+..++++++.+.+..++.|+.... +.....++++
T Consensus 169 ESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~ 245 (559)
T TIGR00840 169 ESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFL 245 (559)
T ss_pred hhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHH
Confidence 9999999999999333322 1 1 1 1111 1111112224455566667777777776432 2355677888
Q ss_pred HHHHHHHHHHHhChhHHHHHHHHhhhccCCC--CchhH---HHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHH
Q 044119 307 LPGITGALSDATGLNFMSGAVLTGLVVPAGP--PLGSA---VVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAIL 381 (816)
Q Consensus 307 ~~~~~~~lae~lG~~~ilGaflaGL~i~~~~--~~~~~---l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~ 381 (816)
+.++++.++|.+|.+++++.+++|+++.+.. ...++ -.+.+......++..+.|+++|+.+-...- .+ .|...
T Consensus 246 ~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~-~~-~~~~i 323 (559)
T TIGR00840 246 ISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENH-EW-NWAFV 323 (559)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hH-HHHHH
Confidence 8999999999999999999999999997531 12222 122333334778889999999997632211 22 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccc-----cCcchhhHHHHHHH
Q 044119 382 QIIILAAYFARVAAIFLSLIF------YKISIRNAILFGLILNIKGVIELLLLTEWRTHKY-----VDDQTVTTIMLSHT 450 (816)
Q Consensus 382 ~~ii~~~~~~K~~~~~l~~~~------~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~-----i~~~~f~~lvl~vl 450 (816)
++.+++.+++|+++++..++. .+.+++|.+.++|. +.||.++++++...-+.+. +-..++.+++++++
T Consensus 324 ~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvl 402 (559)
T TIGR00840 324 VATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVI 402 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHH
Confidence 455556678899998877654 35799999999997 9999999988765433222 22234555566777
Q ss_pred HHHHhHhHHHHhhcCC
Q 044119 451 AVTAIVIPLISMYYDP 466 (816)
Q Consensus 451 l~t~i~~pli~~ly~p 466 (816)
++....+|+++++.-+
T Consensus 403 vqG~T~~pl~~~L~l~ 418 (559)
T TIGR00840 403 FQGGTIKPLVEVLKVK 418 (559)
T ss_pred HHHhhHHHHHHHhCCC
Confidence 7777788999887643
No 16
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.9e-16 Score=173.47 Aligned_cols=380 Identities=13% Similarity=0.124 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccC---CChhHHHHHHHHhhccccccc----cccccc--cCCcchHHHHHHHHHHHHHHHH
Q 044119 77 LLQISLFSLISQLLHLALKRLK---QPKVVCNVLAGIILGPSVLGH----FERWNA--IFHPEEMLLVNTMSIMGGIYFI 147 (816)
Q Consensus 77 llqi~lil~~~~l~~~ll~rl~---~P~iv~~IlaGIilGP~~lg~----~~~~~~--lfp~~~~~~l~~la~iGl~~ll 147 (816)
++-+.++++++.+..+++++-| +|.-+.-++.|+++|-..... .....+ .|.++ .+-.+=+--+.
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~------~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPD------LFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEeccc------HHHHHhhchhh
Confidence 4445566777788899999989 999999999999999543211 111111 22111 12223344578
Q ss_pred HHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CCCchHHHHHHHHHhccCcHHHHHHHHHhcccc
Q 044119 148 FIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIP-GVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLL 226 (816)
Q Consensus 148 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~-~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll 226 (816)
|..|.+++.+.+.|+......+++.|..+...+..+..++++.... ....+..++++|+++|.|+|..+..+++|++ .
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-v 189 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-V 189 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-C
Confidence 9999999999999999999999999888776655444444433221 2223589999999999999999999999999 5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhh--cc-c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhH
Q 044119 227 TSELGQLAISCSILSELLSWMNLILAMIF--KA-N----NHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEI 299 (816)
Q Consensus 227 ~s~~g~l~ls~a~i~Di~~~vll~~~~~~--~~-~----~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~ 299 (816)
...+-.++-+++++||.++++++...... .+ . ...+..++..+.....++...+.+-..+.|+..-+ +....
T Consensus 190 d~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~-~~~~l 268 (575)
T KOG1965|consen 190 DPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR-RTPSL 268 (575)
T ss_pred CcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHH
Confidence 66788999999999999999999333222 11 1 11233333333222333333343444444544332 23446
Q ss_pred HHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCC-----CchhHHHHHhHHHHHHHHHHHHHHHhhcc-ccccccc
Q 044119 300 YMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGP-----PLGSAVVKKSEIIMENIFMPFFYIHIGQL-FNVYSIT 373 (816)
Q Consensus 300 ~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~-----~~~~~l~~kle~~~~~~~~PlfF~~~G~~-idl~~l~ 373 (816)
...+.+++....++++|.+|+++++..+++|+.+++.. +..+.-.+++-.+...+..-+-|+++|+. ++....
T Consensus 269 E~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~- 347 (575)
T KOG1965|consen 269 ESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKH- 347 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccce-
Confidence 77888999999999999999999999999999999862 22222233333333677788889999962 333332
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------ChHHHHHHHHHHhHHHHHHHHHHHHhh-hc-----ccc
Q 044119 374 NWKAFAILQIIILAAYFARVAAIFLSLIFYKI----------SIRNAILFGLILNIKGVIELLLLTEWR-TH-----KYV 437 (816)
Q Consensus 374 ~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~----------~~~e~l~lgl~m~~kG~v~l~~~~~~~-~~-----~~i 437 (816)
.+.....+....++.+++|..-.+-.+.+.+. +.++-..+.|.-.-||.++++++.--. +. +.+
T Consensus 348 ~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i 427 (575)
T KOG1965|consen 348 VYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTI 427 (575)
T ss_pred eeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEE
Confidence 22222345555666677887776666665533 333344555553479999998876322 11 334
Q ss_pred CcchhhHHHHHHHHHHHhHhHHHHhhcC
Q 044119 438 DDQTVTTIMLSHTAVTAIVIPLISMYYD 465 (816)
Q Consensus 438 ~~~~f~~lvl~vll~t~i~~pli~~ly~ 465 (816)
-..+..++++++++....+.|+++++-.
T Consensus 428 ~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 428 FTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred EEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 4445556666777778888999998773
No 17
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.72 E-value=6.9e-15 Score=162.57 Aligned_cols=271 Identities=14% Similarity=0.150 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHHHHHhhhccChhHHh---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHh
Q 044119 135 VNTMSIMGGIYFIFIVTLKMDKARIL---KTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTL 208 (816)
Q Consensus 135 l~~la~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~l 208 (816)
.+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.+ .. ....---.+-
T Consensus 63 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~n~----~~------~~~~~GW~Ip 132 (423)
T PRK14853 63 GTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAVNL----AG------GGALRGWAIP 132 (423)
T ss_pred HHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhC----Cc------hhhhhhhhhh
Confidence 34444555667889999999654331 222222 46788899999876544322 11 1111111234
Q ss_pred ccCcHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 209 AKPFFPVIAHAMNELNL-LTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWII 287 (816)
Q Consensus 209 s~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~ 287 (816)
+.|+.+....+|..+|. .+++++..+++.|++||+.++++++++. +++.+..+.......+ ++. |+.
T Consensus 133 ~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY--t~~i~~~~L~~a~~~~--~~l--------~~l 200 (423)
T PRK14853 133 TATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY--TSELNLEALLLALVPL--ALF--------WLL 200 (423)
T ss_pred hhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc--CCCCCHHHHHHHHHHH--HHH--------HHH
Confidence 56889999999999875 4889999999999999999998885543 2222222322222211 111 222
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCC-----------CchhHHHHHhHHHHHHHHH
Q 044119 288 RTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGP-----------PLGSAVVKKSEIIMENIFM 356 (816)
Q Consensus 288 ~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~-----------~~~~~l~~kle~~~~~~~~ 356 (816)
++. ++++.+.+++++ +++.+..+..|+|+.+|+|++|+++|..+ +..+++++++++++..+++
T Consensus 201 ~~~----~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~IL 274 (423)
T PRK14853 201 VQK----RVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAV 274 (423)
T ss_pred HHc----CCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 332 234455555553 36677889999999999999999999521 2246899999999999999
Q ss_pred HHH-HHHhhccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHH
Q 044119 357 PFF-YIHIGQLFNV-YSITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIE 424 (816)
Q Consensus 357 Plf-F~~~G~~idl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~ 424 (816)
|+| |+..|.++|. ..+.+...-.....+++..+++|.+|.+..++.. +++|++-+.+|++-+..=+++
T Consensus 275 PLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTmS 354 (423)
T PRK14853 275 PVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVS 354 (423)
T ss_pred HHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999 9999999986 3330111112456677788899999988887764 568899888888766677789
Q ss_pred HHHHHHhhh
Q 044119 425 LLLLTEWRT 433 (816)
Q Consensus 425 l~~~~~~~~ 433 (816)
+-+.+.+++
T Consensus 355 lFI~~LAf~ 363 (423)
T PRK14853 355 LLIGELAFG 363 (423)
T ss_pred HHHHHhhcC
Confidence 999999984
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.4e-14 Score=150.34 Aligned_cols=345 Identities=14% Similarity=0.183 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccCh
Q 044119 77 LLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDK 156 (816)
Q Consensus 77 llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~ 156 (816)
...-+.+.+++...-.+-+++-+...+--.+.|+++||.++++.+... -.+......-++.+-+..-.|.++.|+.-
T Consensus 16 ~~~g~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~---wgn~d~it~ei~RvvLcvqvfava~eLPr 92 (467)
T KOG4505|consen 16 AASGGFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS---WGNKDYITYEISRVVLCVQVFAVAMELPR 92 (467)
T ss_pred HHHhhHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc---ccCcchhhhhhhhhhHhHHHHHHHHhccH
Confidence 333344555555555666777777777778999999999988754311 01122344557778888889999999999
Q ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccc---cCChhHHH
Q 044119 157 ARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNL---LTSELGQL 233 (816)
Q Consensus 157 ~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~l---l~s~~g~l 233 (816)
..+.++|+..+.+-+.-++.-+.+.+...|.+.+..+ ...++.+++.+++|++.....+..+.+. .+.++..+
T Consensus 93 ~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~ln----f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~l 168 (467)
T KOG4505|consen 93 AYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNLN----FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNL 168 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHH
Confidence 9999999999988887777778887777777754332 2678899999999997776667665543 45667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cc-----ch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHH
Q 044119 234 AISCSILSELLSWMNLILAMIF--KA-----NN-----HLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYM 301 (816)
Q Consensus 234 ~ls~a~i~Di~~~vll~~~~~~--~~-----~~-----~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~ 301 (816)
..+++..||..++.++.+++.. .. +. ..++.....+++..+++++.|..+++-.++.-- ..|+++
T Consensus 169 L~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrli---d~eSfl 245 (467)
T KOG4505|consen 169 LAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLI---DRESFL 245 (467)
T ss_pred HHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHH
Confidence 9999999999999998666543 11 11 222333333445556666666666665555332 367899
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHH-HHHhHHHHHHHHHHHHHHHhhcccccccccch-----
Q 044119 302 VAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAV-VKKSEIIMENIFMPFFYIHIGQLFNVYSITNW----- 375 (816)
Q Consensus 302 ~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l-~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~----- 375 (816)
.+-+.+++.++.+.+.+|++-.+-.|.||.+++...-+..+. ..++..+...++.-.||++.|..++.+.+ ++
T Consensus 246 ~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqF-n~s~~gl 324 (467)
T KOG4505|consen 246 IFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQF-NLSVEGL 324 (467)
T ss_pred HHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhc-CCcccCc
Confidence 999999999999999999999999999999999886554433 33566676778889999999999998877 32
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 044119 376 KAFAILQIIILAAYFARVAAIFLSLIFY--KISIRNAILFGLILNIKGVIELLLLTEWRT 433 (816)
Q Consensus 376 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~ 433 (816)
..|-.+++-+.+.+.-|+-.+++.-.+- =.+|||+++.|.. +|.|.-++..+..+..
T Consensus 325 ~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGhF-GPIGVgAly~allar~ 383 (467)
T KOG4505|consen 325 PVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGHF-GPIGVGALYYALLARK 383 (467)
T ss_pred hHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhccC-CCccHHHHHHHHHHHh
Confidence 2454444444444455666555543322 1379999999997 9999988888877653
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.49 E-value=7.1e-12 Score=136.28 Aligned_cols=270 Identities=13% Similarity=0.144 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHhhhccChhHHh---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHh
Q 044119 135 VNTMSIMGGIYFIFIVTLKMDKARIL---KTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTL 208 (816)
Q Consensus 135 l~~la~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~l 208 (816)
.+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.. +.... .--+|+-
T Consensus 53 ~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~-------~~GW~IP- 122 (373)
T TIGR00773 53 LHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPIT-------REGWAIP- 122 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcc-------cCccccc-
Confidence 34444555667888999999877653 333443 56678889999876444332 11100 0001111
Q ss_pred ccCcHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 209 AKPFFPVIAHAMNELN-LLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWII 287 (816)
Q Consensus 209 s~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~ 287 (816)
..|+.+....++.=+| ..+..+....++-|++||+.+++++.++. +++.+..+...+..++.+ .++.
T Consensus 123 ~ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY--t~~i~~~~L~~a~~~~~~----------l~~~ 190 (373)
T TIGR00773 123 AATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY--TNDLSMAALLVAAVAIAV----------LAVL 190 (373)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec--CCCCCHHHHHHHHHHHHH----------HHHH
Confidence 1234444444443332 35667788999999999999987774432 233233333333222211 1233
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCch----hHHHHHhHHHHHHHHHHHH-HHH
Q 044119 288 RTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLG----SAVVKKSEIIMENIFMPFF-YIH 362 (816)
Q Consensus 288 ~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~----~~l~~kle~~~~~~~~Plf-F~~ 362 (816)
+|.. +++...+..+..++ .+++ ...|+|+.+|+|++|+++|...+.. +++++.+++.+..+++|+| |+.
T Consensus 191 ~~~~----v~~~~~y~~lgvll-W~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFan 264 (373)
T TIGR00773 191 NRCG----VRRLGPYMLVGVIL-WFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFAN 264 (373)
T ss_pred HHcC----CchhhHHHHHHHHH-HHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4432 33344444433333 3333 7999999999999999999864433 4556666666889999999 999
Q ss_pred hhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHHHHHHHHhh
Q 044119 363 IGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIELLLLTEWR 432 (816)
Q Consensus 363 ~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~l~~~~~~~ 432 (816)
.|.++|...+ +.........+++..+++|.+|++..++.. +++|++-..+|++-+.-=++++-+.+.++
T Consensus 265 AGv~l~~~~~-~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf 343 (373)
T TIGR00773 265 AGVSLQGVSL-NGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAF 343 (373)
T ss_pred cCeeeecCcc-hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999987555 322233466777888899999999988764 56889988888876666678888888888
Q ss_pred h
Q 044119 433 T 433 (816)
Q Consensus 433 ~ 433 (816)
+
T Consensus 344 ~ 344 (373)
T TIGR00773 344 G 344 (373)
T ss_pred C
Confidence 4
No 20
>PRK11175 universal stress protein UspE; Provisional
Probab=99.46 E-value=7e-12 Score=136.68 Aligned_cols=272 Identities=10% Similarity=0.011 Sum_probs=162.6
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhh--cccccchhHHHH-HHhcccccC
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRR--RLKENSTDRIMR-AVTNQTKSS 570 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~--~~~~~~~~~i~~-af~~~~~~~ 570 (816)
|||+|+...++....++.+..++... ..+++++|.++-.....+........+. .......++.++ +.+. ....
T Consensus 5 ~ILv~~D~s~~~~~al~~a~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 81 (305)
T PRK11175 5 NILVVIDPNQDDQPALRRAVYLAQRN--GGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKP-YLDA 81 (305)
T ss_pred eEEEEcCCCccccHHHHHHHHHHHhc--CCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH-Hhhc
Confidence 69999999888888887777776543 3578888887532211111110000000 000011122233 2222 1112
Q ss_pred ccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEEecCCCCCCCC
Q 044119 571 CVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGILVDSGLPRSLS 649 (816)
Q Consensus 571 ~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIlVdrg~~~~~~ 649 (816)
++. ++...... .+.+++|++.|+++++||||+|+|++... .+. +++.-+++++++||+|-+ |..+..
T Consensus 82 ~~~--~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~---~~~~~gs~~~~l~~~~~~pvlv-v~~~~~---- 149 (305)
T PRK11175 82 GIP--IEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKL---ESVIFTPTDWHLLRKCPCPVLM-VKDQDW---- 149 (305)
T ss_pred CCc--eEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHH---HhhccChhHHHHHhcCCCCEEE-eccccc----
Confidence 455 65554433 67899999999999999999999987542 234 889999999999999854 443211
Q ss_pred CCCcceEEEEeccCCcch-------HHHHHHHHHHhcCC-CeEEEEEEEEeCCCC---------Cchhhhhhh---HHHH
Q 044119 650 STHFSYDVAVFFLGGADD-------REVMALVSRMAGHP-SLTVTVFKIDFKGNQ---------AENECERQL---DEYV 709 (816)
Q Consensus 650 ~~~~~~~i~v~f~GG~dd-------reAL~~a~rma~~~-~v~ltvvr~~~~~~~---------~~~~~~~~~---d~~~ 709 (816)
....+|++++-|.+++ +.|+.+|.+||+.. +.+++++|+.+.... ..++.++.. -.+.
T Consensus 150 --~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (305)
T PRK11175 150 --PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLA 227 (305)
T ss_pred --CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHH
Confidence 1135899999987643 67999999999886 999999998753211 001111111 1234
Q ss_pred HHHHHHhcCCCCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCC
Q 044119 710 MNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYG 789 (816)
Q Consensus 710 l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~ 789 (816)
++++.+..... .........+..+.+....+ +.+.||+|+|.++. +. + ..--+|...+.++. .
T Consensus 228 l~~~~~~~~~~--~~~~~v~~G~~~~~I~~~a~-~~~~DLIVmG~~~~--~~----~----~~~llGS~a~~v~~----~ 290 (305)
T PRK11175 228 MKALRQKFGID--EEQTHVEEGLPEEVIPDLAE-HLDAELVILGTVGR--TG----L----SAAFLGNTAEHVID----H 290 (305)
T ss_pred HHHHHHHhCCC--hhheeeccCCHHHHHHHHHH-HhCCCEEEECCCcc--CC----C----cceeecchHHHHHh----c
Confidence 55555543221 11111112233333222222 25799999999754 21 1 23447999999996 4
Q ss_pred CcccEEEEee
Q 044119 790 GTMSVLVVHC 799 (816)
Q Consensus 790 ~~~SVLvvqq 799 (816)
++++||||+.
T Consensus 291 ~~~pVLvv~~ 300 (305)
T PRK11175 291 LNCDLLAIKP 300 (305)
T ss_pred CCCCEEEEcC
Confidence 6889999964
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.15 E-value=1.2e-08 Score=112.93 Aligned_cols=294 Identities=15% Similarity=0.158 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHHHhhhccChhHHh---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHH
Q 044119 134 LVNTMSIMGGIYFIFIVTLKMDKARIL---KTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVT 207 (816)
Q Consensus 134 ~l~~la~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ 207 (816)
..+.+.+.-+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.. ..+ . .--+|+-
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~----~~~--~----~~GWgIP 137 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA----DTP--S----QHGFGIP 137 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec----CCC--c----cCccccc
Confidence 344455555677889999999876553 233333 56678888999876443322 110 0 0011111
Q ss_pred hccCcHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 208 LAKPFFPVIAHAMNELN-LLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWI 286 (816)
Q Consensus 208 ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l 286 (816)
..|+.+....++.=+| ..++.+....++-|++||+.++++++++. +++....+..++.+++.++ ++
T Consensus 138 -mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY--t~~i~~~~L~~a~~~~~~l----------~~ 204 (438)
T PRK14856 138 -MATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY--TTNLKFAWLLGALGVVLVL----------AV 204 (438)
T ss_pred -cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec--CCCCcHHHHHHHHHHHHHH----------HH
Confidence 2344444444444443 24667778899999999999987774432 3333344444443322211 22
Q ss_pred HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCc---------------------------
Q 044119 287 IRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPL--------------------------- 339 (816)
Q Consensus 287 ~~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~--------------------------- 339 (816)
.+|.. ++....++++.. +..+....-|+|+.++..++|+++|..++.
T Consensus 205 ln~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (438)
T PRK14856 205 LNRLN----VRSLIPYLLLGV--LLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQ 278 (438)
T ss_pred HHHcC----CccccHHHHHHH--HHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccch
Confidence 23322 233334444443 334445689999999999999999974322
Q ss_pred -----------------hhHHHHHhHHHHHHHHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 340 -----------------GSAVVKKSEIIMENIFMPFF-YIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLI 401 (816)
Q Consensus 340 -----------------~~~l~~kle~~~~~~~~Plf-F~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 401 (816)
-+++++.+++.+..+.+|+| |.-.|..++.... .. .-.....+++..++||.+|.+..++
T Consensus 279 ~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~-~~-~~pv~lGI~~GLvvGK~lGI~~~s~ 356 (438)
T PRK14856 279 QEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN-LE-VDKVLLGVILGLCLGKPLGIFLITF 356 (438)
T ss_pred hhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh-hc-cCcHHHHHHHHHHhcchHHHHHHHH
Confidence 13466677788888999999 8899999875432 11 1123455666777899999888877
Q ss_pred Hh----------CCChHHHHHHHHHHhHHHHHHHHHHHHhhhc--cccCcchhhHHHHHHHHHHHhHhHH
Q 044119 402 FY----------KISIRNAILFGLILNIKGVIELLLLTEWRTH--KYVDDQTVTTIMLSHTAVTAIVIPL 459 (816)
Q Consensus 402 ~~----------~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~--~~i~~~~f~~lvl~vll~t~i~~pl 459 (816)
.. +++|++-+-.|++-+.-=++++-+.+.+++. ...-++.-..+++..++ +.+.+-+
T Consensus 357 lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~l-sai~G~~ 425 (438)
T PRK14856 357 ISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLI-SGIIGAL 425 (438)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 64 5688888888887666667889899988843 22222333333444444 3444443
No 22
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.13 E-value=4.6e-10 Score=106.06 Aligned_cols=130 Identities=15% Similarity=0.274 Sum_probs=97.8
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCccc
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCVS 573 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~v~ 573 (816)
|||+|+.+.++...+++.+..+++. .+.+++++|+++.+....+ +.... .....++.++.+.......++.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~g~~ 71 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQLEV---NVQRARKLLRQAERIAASLGVP 71 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chhHH---HHHHHHHHHHHHHHHhhhcCCc
Confidence 6999999999999999999999875 3579999999997654332 11100 1123445555444411123567
Q ss_pred cceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEE
Q 044119 574 LTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGIL 639 (816)
Q Consensus 574 ~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIl 639 (816)
+++....+ .+..++||+.|+++++|+|+||+|++.... +. +|++.++|++++||+|.|.
T Consensus 72 --~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~---~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 72 --VHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLR---DRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred --eEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcc---ceecCchHHHHHhcCCCCEEEe
Confidence 77888777 679999999999999999999999887542 34 9999999999999998763
No 23
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.12 E-value=1.3e-08 Score=111.00 Aligned_cols=269 Identities=12% Similarity=0.097 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHHHHhhhccChhHHh---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhc
Q 044119 136 NTMSIMGGIYFIFIVTLKMDKARIL---KTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLA 209 (816)
Q Consensus 136 ~~la~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls 209 (816)
+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.. +... ..--+|+- .
T Consensus 61 ~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~-------~~~GWgIP-m 130 (389)
T PRK09560 61 HWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPE-------TLRGWAIP-A 130 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCc-------ccCccccc-c
Confidence 3344444567888999999877653 233333 56678889999876444332 1110 00001111 1
Q ss_pred cCcHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 210 KPFFPVIAHAMNELN-LLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIR 288 (816)
Q Consensus 210 ~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~ 288 (816)
.|+.+....++.=+| ..+..+....++-|++||+.++++++++. +++.+..+...+..++.++ ++.+
T Consensus 131 ATDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY--t~~i~~~~L~~a~~~~~~l----------~~ln 198 (389)
T PRK09560 131 ATDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY--TSDLSLPALALAAIAIAVL----------FLLN 198 (389)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec--CCCCCHHHHHHHHHHHHHH----------HHHH
Confidence 344444444544332 35666788999999999999987774432 3333333433333222211 2223
Q ss_pred HcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCc------hhHHHHHhHHHHHHHHHHHH-HH
Q 044119 289 TTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPL------GSAVVKKSEIIMENIFMPFF-YI 361 (816)
Q Consensus 289 r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~------~~~l~~kle~~~~~~~~Plf-F~ 361 (816)
|.. ++....++.+.. +..+....-|+|+.++..++|+++|..++. -+++++++++.+..+.+|+| |.
T Consensus 199 ~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAla 272 (389)
T PRK09560 199 RLG----VTKLTPYLIVGA--ILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAFA 272 (389)
T ss_pred HcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHhh
Confidence 322 233444444443 333444588999999999999999975322 24688899999888889999 88
Q ss_pred HhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHHHHHHHHh
Q 044119 362 HIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIELLLLTEW 431 (816)
Q Consensus 362 ~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~l~~~~~~ 431 (816)
-.|..++-..+.. ..-.....+++..++||.+|.+..++.. +++|++=...|++-+.-=++++-+.+.+
T Consensus 273 NAGV~l~~~~~~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LA 351 (389)
T PRK09560 273 NAGVSLAGISLSS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSLA 351 (389)
T ss_pred cCCeeecCCcHHh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888884322311 1112345566677789999988887764 5688888888887666667889899988
Q ss_pred hh
Q 044119 432 RT 433 (816)
Q Consensus 432 ~~ 433 (816)
+.
T Consensus 352 F~ 353 (389)
T PRK09560 352 FG 353 (389)
T ss_pred cC
Confidence 83
No 24
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.10 E-value=1.7e-08 Score=110.03 Aligned_cols=270 Identities=11% Similarity=0.139 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHHHHHhhhccChhHHh---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHh
Q 044119 135 VNTMSIMGGIYFIFIVTLKMDKARIL---KTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTL 208 (816)
Q Consensus 135 l~~la~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~l 208 (816)
.+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.. +... ..--+|+ =
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~-------~~~GWaI-P 129 (388)
T PRK09561 60 LLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPV-------TREGWAI-P 129 (388)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCc-------ccCcccc-c
Confidence 33444444567888999999877663 333443 56678888999876443322 1100 0000111 1
Q ss_pred ccCcHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 209 AKPFFPVIAHAMNELN-LLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWII 287 (816)
Q Consensus 209 s~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~ 287 (816)
..|+.+....++.=+| ..+..+....++-|++||+.++++++++. +++.++.+..++.+++.++ ++.
T Consensus 130 ~ATDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY--t~~i~~~~L~~a~~~~~~l----------~~l 197 (388)
T PRK09561 130 AATDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY--TSDLSMVSLGVAAVAIAVL----------AVL 197 (388)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec--CCCccHHHHHHHHHHHHHH----------HHH
Confidence 1244444444443332 35666788999999999999987774432 2333333333333222111 222
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCc----hhHHHHHhHHHHHHHHHHHH-HHH
Q 044119 288 RTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPL----GSAVVKKSEIIMENIFMPFF-YIH 362 (816)
Q Consensus 288 ~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~----~~~l~~kle~~~~~~~~Plf-F~~ 362 (816)
+|.. ++....+.++.. +..+.....|+|+.++..++|+++|...+. -+++++++++.+..+.+|+| |.-
T Consensus 198 n~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaN 271 (388)
T PRK09561 198 NLCG----VRRTSVYILVGV--VLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFAN 271 (388)
T ss_pred HHcC----CccchHHHHHHH--HHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhc
Confidence 3321 233344444443 334445689999999999999999975322 25688899999999999999 888
Q ss_pred hhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHHHHHHHHhh
Q 044119 363 IGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIELLLLTEWR 432 (816)
Q Consensus 363 ~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~l~~~~~~~ 432 (816)
.|..++-..+ +...-.....+++..++||.+|.+..++.. +++|++-...|++-+.-=++++-+.+.++
T Consensus 272 AGV~l~~~~~-~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF 350 (388)
T PRK09561 272 AGVSLQGVTL-DGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAF 350 (388)
T ss_pred CCeeeccCcH-HhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888732222 111112344566667789999988887764 56888888888876666678888888888
Q ss_pred h
Q 044119 433 T 433 (816)
Q Consensus 433 ~ 433 (816)
+
T Consensus 351 ~ 351 (388)
T PRK09561 351 G 351 (388)
T ss_pred C
Confidence 5
No 25
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.08 E-value=7.2e-11 Score=132.20 Aligned_cols=367 Identities=11% Similarity=0.115 Sum_probs=226.1
Q ss_pred HHHHHHHHHhccC--CChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhh
Q 044119 86 ISQLLHLALKRLK--QPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTV 163 (816)
Q Consensus 86 ~~~l~~~ll~rl~--~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~ 163 (816)
++.+..-+..+++ +|.-...|+.|+++|-.+.+.-.. .. +..+ .+ .+--.=+--++|-+|+-|.-+.+..|.
T Consensus 53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~-~~-~~L~-s~---vFFlyLLPPIvlDAGYfMp~r~Ff~Nl 126 (670)
T KOG1966|consen 53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATI-AP-FFLE-SD---VFFLYLLPPIVLDAGYFMPNRAFFENL 126 (670)
T ss_pred HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcc-cc-cccc-cc---chhhhhcCHHHhcccccCccHHHHhcc
Confidence 3344333344444 788888899999998655433110 00 0000 00 000011122668899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhCC-CC-CchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 044119 164 RNGWSVSVTCLVVPFTISSFLTSLLHSYIP-GV-NKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILS 241 (816)
Q Consensus 164 ~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~-~~-~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~ 241 (816)
..++..++.|.+.-.+...+..|.+..... +. ......+++|...|..+|..+..+..|.. .|.-+=-++.+++++|
T Consensus 127 gtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESLlN 205 (670)
T KOG1966|consen 127 GTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESLLN 205 (670)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhhhc
Confidence 999999999988866544444343322211 11 12356788999999999999999999998 4666667889999999
Q ss_pred HHHHHHHHHHHHhh---ccc----h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHH
Q 044119 242 ELLSWMNLILAMIF---KAN----N---HLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGIT 311 (816)
Q Consensus 242 Di~~~vll~~~~~~---~~~----~---~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~~~~ 311 (816)
|.+.++++-++..+ ++. . .....+....+.+++++.+...+....-|.+.+ ++=...++++++.+.+
T Consensus 206 DaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~---vrviePvfif~~pYla 282 (670)
T KOG1966|consen 206 DAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH---VRVLEPVFIFLLPYLA 282 (670)
T ss_pred CceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc---eeeecchhhhhHHHHH
Confidence 99999999222211 211 0 111111111112222333333333333444332 3334567889999999
Q ss_pred HHHHHHhChhHHHHHHHHhhhccCCC--CchhHH---HHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHH
Q 044119 312 GALSDATGLNFMSGAVLTGLVVPAGP--PLGSAV---VKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIIL 386 (816)
Q Consensus 312 ~~lae~lG~~~ilGaflaGL~i~~~~--~~~~~l---~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~ 386 (816)
+..+|.++++++++-.++|+++...- ....+. ++.+-.+.+..-.++.|++.|.++--. ...| .|.++.+-++
T Consensus 283 YL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-~h~w-d~~Fi~~T~~ 360 (670)
T KOG1966|consen 283 YLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-NHHW-DFAFICLTLV 360 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC-ccee-ehhhhhhHHH
Confidence 99999999999999999999998751 122222 222222335666788888889876432 1122 3444555555
Q ss_pred HHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHhHHHHHHHHHHHHhhhcccc-----CcchhhHHHHHHHHHHHh
Q 044119 387 AAYFARVAAIFLSLIFY------KISIRNAILFGLILNIKGVIELLLLTEWRTHKYV-----DDQTVTTIMLSHTAVTAI 455 (816)
Q Consensus 387 ~~~~~K~~~~~l~~~~~------~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i-----~~~~f~~lvl~vll~t~i 455 (816)
...+.|.+++...+++. +++..|-+.++.+ +-||.++..+...--...+- -..+..++.+++.+..+.
T Consensus 361 fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVflQGiT 439 (670)
T KOG1966|consen 361 FCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFLQGIT 439 (670)
T ss_pred HHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeeecccc
Confidence 56677988888877765 4567788887776 77888776554322212222 233455666777888888
Q ss_pred HhHHHHhhcC
Q 044119 456 VIPLISMYYD 465 (816)
Q Consensus 456 ~~pli~~ly~ 465 (816)
.-|+++|+-=
T Consensus 440 Ikplvk~L~V 449 (670)
T KOG1966|consen 440 IKPLVKFLKV 449 (670)
T ss_pred hHHHHHHHcc
Confidence 8999999863
No 26
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.05 E-value=7.4e-08 Score=104.75 Aligned_cols=270 Identities=14% Similarity=0.122 Sum_probs=164.7
Q ss_pred HHHHHHHHHHHHHHHhhhccChhHHh---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHh
Q 044119 135 VNTMSIMGGIYFIFIVTLKMDKARIL---KTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTL 208 (816)
Q Consensus 135 l~~la~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~l 208 (816)
.+.+.+.=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+... .....+ +|+-
T Consensus 57 ~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~~-~~~~~G---------W~IP- 125 (383)
T PRK14854 57 MHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINHD-IKVING---------WAIP- 125 (383)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhccC-CcccCc---------cccc-
Confidence 33344444567888999999876553 333443 566888899998775554331 000001 1111
Q ss_pred ccCcHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 209 AKPFFPVIAHAMNELN-LLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWII 287 (816)
Q Consensus 209 s~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~ 287 (816)
..|+.+....++.=+| ..+..+.-..++-|++||+.++++++++. +++.++.+......++.+ .++ +.
T Consensus 126 ~ATDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY--t~~i~~~~L~~A~~~~~~--l~~-------~n 194 (383)
T PRK14854 126 SATDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY--TKSLSLLSLSLGTLFILA--MII-------CN 194 (383)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec--CCCccHHHHHHHHHHHHH--HHH-------HH
Confidence 1234443444443332 35667778888999999999987774432 233233333332221111 111 12
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCc----hhHHHHHhHHHHHHHHHHHH-HHH
Q 044119 288 RTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPL----GSAVVKKSEIIMENIFMPFF-YIH 362 (816)
Q Consensus 288 ~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~----~~~l~~kle~~~~~~~~Plf-F~~ 362 (816)
|+.. ++....++++.. +..+....-|+|+.++..+.|+++|...+. .+++++++++.+..+.+|+| |.-
T Consensus 195 r~~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aN 268 (383)
T PRK14854 195 RIFK----INRSSVYVVLGF--FAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFAN 268 (383)
T ss_pred HhcC----CceehHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhc
Confidence 2111 222333444433 334445689999999999999999974221 24688888999999999999 888
Q ss_pred hhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHHHHHHHHhh
Q 044119 363 IGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIELLLLTEWR 432 (816)
Q Consensus 363 ~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~l~~~~~~~ 432 (816)
.|..++-..+ +...-.....+++..++||.+|.+..++.. +++|++-...|++-+.-=++++-+.+.++
T Consensus 269 AGV~l~~~~~-~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF 347 (383)
T PRK14854 269 AGISFSGISF-SILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAF 347 (383)
T ss_pred CCeeeccCcH-HhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888842222 111112344566677789999988887754 56889988888876667778999999998
Q ss_pred h
Q 044119 433 T 433 (816)
Q Consensus 433 ~ 433 (816)
+
T Consensus 348 ~ 348 (383)
T PRK14854 348 N 348 (383)
T ss_pred C
Confidence 5
No 27
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.02 E-value=5.5e-08 Score=107.38 Aligned_cols=266 Identities=13% Similarity=0.097 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHHHhhhccChhHHh---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHh
Q 044119 135 VNTMSIMGGIYFIFIVTLKMDKARIL---KTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTL 208 (816)
Q Consensus 135 l~~la~iGl~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~l 208 (816)
.+.+.+-=+.+|.|.+|+|+..+.+. ++.|++ ..-++.|+++|.++-..+.+ + . .. .--+|+-
T Consensus 64 ~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n~--~--~--~~----~~GWgIP- 132 (423)
T PRK14855 64 EHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNA--G--G--PG----ASGWGVP- 132 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheeec--C--C--Cc----cCccccc-
Confidence 33444445567888999999877653 333443 45678888999876443321 1 0 00 0111111
Q ss_pred ccCcHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 209 AKPFFPVIAHAMNELN-LLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWII 287 (816)
Q Consensus 209 s~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~ 287 (816)
..|+.+....+|.=+| ..+..+....++-|++||+.++++++++. +++.+..+..++.+++.+ .++.
T Consensus 133 mATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY--t~~i~~~~L~~a~~~~~~----------l~~l 200 (423)
T PRK14855 133 MATDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY--TSGLNLLALLLAALTWAL----------ALLA 200 (423)
T ss_pred cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec--CCCCCHHHHHHHHHHHHH----------HHHH
Confidence 2345454555544443 24556778899999999999987764432 233333343333322211 1222
Q ss_pred HHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCC-Cc---------------------------
Q 044119 288 RTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGP-PL--------------------------- 339 (816)
Q Consensus 288 ~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~-~~--------------------------- 339 (816)
+|.. ++....++.+.. +..+....-|+|+.++..++|+++|..+ +.
T Consensus 201 n~~~----v~~~~~Y~~~G~--~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (423)
T PRK14855 201 GRLG----VTSLKIYAVLGA--LLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLE 274 (423)
T ss_pred HHcC----CccccHHHHHHH--HHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhh
Confidence 3321 233344444443 3344456899999999999999999741 11
Q ss_pred ---------hhHHHHHhHHHHHHHHHHHH-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh------
Q 044119 340 ---------GSAVVKKSEIIMENIFMPFF-YIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFY------ 403 (816)
Q Consensus 340 ---------~~~l~~kle~~~~~~~~Plf-F~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------ 403 (816)
.+++++.+++.+..+.+|+| |.-.|..++-..+ .+ ....+++..++||.+|.+..++..
T Consensus 275 ~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~-~p----v~lGI~~GLvvGK~lGI~~~s~lavkl~~a 349 (423)
T PRK14855 275 DLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL-GT----VSLGVFLGLLLGKPLGVVGGAWLAVRLGLA 349 (423)
T ss_pred hhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC-Cc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCC
Confidence 13577778888888999999 8888888843222 22 344555666789999988887764
Q ss_pred ----CCChHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 044119 404 ----KISIRNAILFGLILNIKGVIELLLLTEWRTH 434 (816)
Q Consensus 404 ----~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~ 434 (816)
+++|++-...|++-+.-=++++-+.+.+++.
T Consensus 350 ~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 350 SLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5688998888887666677899899999853
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.83 E-value=1.7e-08 Score=109.96 Aligned_cols=273 Identities=16% Similarity=0.173 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccChhHHh---hhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHH
Q 044119 134 LVNTMSIMGGIYFIFIVTLKMDKARIL---KTVRN---GWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVT 207 (816)
Q Consensus 134 ~l~~la~iGl~~llF~~Gle~d~~~l~---~~~~~---~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ 207 (816)
..+.+.+.=+.+|.|.+|+|+..+.+. ++.|+ ...-++.|+++|.++-..+.+ .++ ...--+|+
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~~n~------~~~---~~~~GW~I- 124 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLAFNA------GGP---EAAHGWAI- 124 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGG--------SST---THHHHTSS-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHheeec------CCC---CcCceEEe-
Confidence 334445555667888999999877553 23333 356678888888866332221 100 01111222
Q ss_pred hccCcHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 208 LAKPFFPVIAHAMNELN-LLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWI 286 (816)
Q Consensus 208 ls~Ts~~vv~~iL~el~-ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l 286 (816)
=..|+.+....++.=++ ..+..+....++-|++||+.++++++++.. ++.+..+.....+++. + .+.
T Consensus 125 P~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt--~~i~~~~L~~a~~~~~-~---------l~~ 192 (378)
T PF06965_consen 125 PMATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT--DGISLLWLLLAAAALL-L---------LFV 192 (378)
T ss_dssp SS---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-------HHHHHHHHHHHH-H---------HHH
T ss_pred cccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC--CCCCHHHHHHHHHHHH-H---------HHH
Confidence 23456666666665443 245667789999999999999888755432 2222333333222211 1 122
Q ss_pred HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCch--------hHHHHHhHHHHHHHHHHH
Q 044119 287 IRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLG--------SAVVKKSEIIMENIFMPF 358 (816)
Q Consensus 287 ~~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~--------~~l~~kle~~~~~~~~Pl 358 (816)
.+|.. ++....+..+.. +..+.....|+|+.++..+.|+++|..++.+ +++++++++.+..+.+|+
T Consensus 193 l~r~~----v~~~~~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPl 266 (378)
T PF06965_consen 193 LNRLG----VRSLWPYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPL 266 (378)
T ss_dssp HHHTT-------THHHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHCC----CceehHHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHh
Confidence 33322 222333333332 3344456899999999999999999875442 378888999989999999
Q ss_pred H-HHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHHHHH
Q 044119 359 F-YIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIELLL 427 (816)
Q Consensus 359 f-F~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~l~~ 427 (816)
| |.-.|..++-..+ ....-.....+++..++||.+|.+..++.. +++|++=...|++-+.-=++++-+
T Consensus 267 FAlaNAGV~l~~~~~-~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFI 345 (378)
T PF06965_consen 267 FALANAGVSLSGSSL-GDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFI 345 (378)
T ss_dssp HHHHHS----SSS----THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHH
T ss_pred HhheeCceEEecCch-HhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9 8899998886554 211222334555666789999988876653 456777677777655566788899
Q ss_pred HHHhhhcc
Q 044119 428 LTEWRTHK 435 (816)
Q Consensus 428 ~~~~~~~~ 435 (816)
.+.+++..
T Consensus 346 a~LAF~~~ 353 (378)
T PF06965_consen 346 AGLAFDDP 353 (378)
T ss_dssp HHHHSTT-
T ss_pred HHHHcCCh
Confidence 99998763
No 29
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.80 E-value=1.2e-06 Score=92.03 Aligned_cols=262 Identities=13% Similarity=0.115 Sum_probs=159.6
Q ss_pred HHHHHHhhhccChhHHh---hhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHH
Q 044119 144 IYFIFIVTLKMDKARIL---KTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIA 217 (816)
Q Consensus 144 ~~llF~~Gle~d~~~l~---~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~ 217 (816)
.+|.+.+|+|+..+.+. ++++++ ..-++.|++.|.++-..+ .... + ...-==++-+.|+.+...
T Consensus 72 AvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~~~----n~~~--p----~~~~GWaIP~ATDiAFAl 141 (390)
T COG3004 72 AVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLAL----NAGD--P----ATLEGWAIPMATDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHhhee----ecCC--h----hhhcCcCcccHHHHHHHH
Confidence 35667789999887764 344443 345667778887553222 1111 0 000000122345555555
Q ss_pred HHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 044119 218 HAMNEL-NLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAV 296 (816)
Q Consensus 218 ~iL~el-~ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~ 296 (816)
.++.=+ +..++.+.-..++-+++||+-++++.++... ++.+..+...+.++.. +. ..++++ .+
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt--~~Ls~~al~~a~~~i~-vL-----~~lN~~--------~v 205 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT--TDLSMAALGIAALAIA-VL-----AVLNRL--------GV 205 (390)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc--CCccHHHHHHHHHHHH-HH-----HHHHHh--------Cc
Confidence 555555 3467788889999999999999887755432 2322222222211111 11 111221 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCC----chhHHHHHhHHHHHHHHHHHH-HHHhhccccccc
Q 044119 297 KEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPP----LGSAVVKKSEIIMENIFMPFF-YIHIGQLFNVYS 371 (816)
Q Consensus 297 ~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~----~~~~l~~kle~~~~~~~~Plf-F~~~G~~idl~~ 371 (816)
+....+++...++..+. ..-|+|..++..+.|+.+|-..+ --+++++.+.+.+..+.+|+| |.-.|.+++--.
T Consensus 206 ~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~ 283 (390)
T COG3004 206 RRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVS 283 (390)
T ss_pred hhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccccc
Confidence 22334444554444433 47899999999999999996532 235778888888899999999 888888876222
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 044119 372 ITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIELLLLTEWRTH 434 (816)
Q Consensus 372 l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~ 434 (816)
+ +...-.....+++..+++|.++.+..++.. +.+|++-...+++-+..=++++-+...+++.
T Consensus 284 ~-~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 284 L-SGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred c-cccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 2 111222345566677889999988887764 5678888888877565667888888888765
No 30
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.40 E-value=6.9e-06 Score=77.33 Aligned_cols=128 Identities=16% Similarity=0.093 Sum_probs=80.8
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCc---hhhhhhhHHHHHHHHHHhcC-CCCceEEEEEEeC
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAE---NECERQLDEYVMNEFRERNA-GNACVVCREMMVN 731 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~-~~~~v~y~e~~v~ 731 (816)
+|++|.-|.++.+.++++|.+||+.++.+++++|+++...... .+...+..++.++.+.+... .+..+.+....-.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 80 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTIIRIDH 80 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEEEEecC
Confidence 5899999999999999999999999999999999987532211 11112222344444444321 1223333222212
Q ss_pred ChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 732 DSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 732 ~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
+..+.+....+ +.++||+|+|.++.. . | ...-+|...+.+.. .++++||||+
T Consensus 81 ~~~~~I~~~a~-~~~~dlIV~G~~~~~--~-------~-~~~~lGs~~~~v~~----~~~~pvlvv~ 132 (132)
T cd01988 81 DIASGILRTAK-ERQADLIIMGWHGST--S-------L-RDRLFGGVIDQVLE----SAPCDVAVVK 132 (132)
T ss_pred CHHHHHHHHHH-hcCCCEEEEecCCCC--C-------c-cceecCchHHHHHh----cCCCCEEEeC
Confidence 33232222222 246999999999752 1 1 34568999999996 4688999985
No 31
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.33 E-value=4.8e-06 Score=80.29 Aligned_cols=140 Identities=11% Similarity=0.142 Sum_probs=89.3
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhh--cccccchhHHHHHHhcccccCc
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRR--RLKENSTDRIMRAVTNQTKSSC 571 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~--~~~~~~~~~i~~af~~~~~~~~ 571 (816)
+||+|+...++....++.+..++... ..+++++|+++.+..........+.... .......+..++.+........
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~--~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 78 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK--GQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSRKG 78 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC--CCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 48999999999898888888876643 4689999998754321100000000000 0011123334443322111124
Q ss_pred cccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hH-HHHHHHhhcCC--CcEEEEecCC
Q 044119 572 VSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LH-QLNLNIQAYAQ--CTIGILVDSG 643 (816)
Q Consensus 572 v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~-~~n~~vl~~Ap--CsVgIlVdrg 643 (816)
+. ++...... .+.++.|++.|++.++|+|+||=|++.... .. ++ ++-++|+++|| |+| +.|.+|
T Consensus 79 ~~--~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~---~~~~gssva~~Vi~~a~~~c~V-lvv~~~ 146 (146)
T cd01989 79 VQ--CEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFS---MKFKKSDVASSVLKEAPDFCTV-YVVSKG 146 (146)
T ss_pred Ce--EEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCcee---ecccCCchhHHHHhcCCCCceE-EEEeCc
Confidence 55 55555544 578999999999999999999999887542 33 55 69999999999 998 556665
No 32
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.26 E-value=9e-06 Score=76.30 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=83.6
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchh--hhhhhHHHHHHHHH-------HhcCCCCceEE
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENE--CERQLDEYVMNEFR-------ERNAGNACVVC 725 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~--~~~~~d~~~l~~~~-------~~~~~~~~v~y 725 (816)
.||++++-|.++.++|+.+|.+++++++.+++++++.+........ .....+....+... ..........+
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVIE 82 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccceeE
Confidence 5899999999999999999999999999999999999753221110 00000000000000 00011233445
Q ss_pred EEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 726 REMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 726 ~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
......+..+.+....+ ..++|++|+|+++. +. | +.--+|.+.+.++. .++++||||.
T Consensus 83 ~~~~~~~~~~~i~~~~~-~~~~dliv~G~~~~--~~-------~-~~~~~gs~~~~l~~----~~~~pVlvv~ 140 (140)
T PF00582_consen 83 VVIESGDVADAIIEFAE-EHNADLIVMGSRGR--SG-------L-ERLLFGSVAEKLLR----HAPCPVLVVP 140 (140)
T ss_dssp EEEEESSHHHHHHHHHH-HTTCSEEEEESSST--TS-------T-TTSSSHHHHHHHHH----HTSSEEEEEE
T ss_pred EEEEeeccchhhhhccc-cccceeEEEeccCC--CC-------c-cCCCcCCHHHHHHH----cCCCCEEEeC
Confidence 55556666665555554 47899999999983 21 1 22348999999996 3678999985
No 33
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.24 E-value=6.9e-06 Score=76.84 Aligned_cols=120 Identities=14% Similarity=0.115 Sum_probs=85.3
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCccc
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCVS 573 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~v~ 573 (816)
|||+|+...+....+++.+..++... +..++++|+++-... + . ....++.++.+..... ...
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~--~----~--------~~~~~~~l~~~~~~~~--~~~ 62 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL--KAPWYVVYVETPRLN--R----L--------SEAERRRLAEALRLAE--ELG 62 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh--CCCEEEEEEecCccc--c----C--------CHHHHHHHHHHHHHHH--HcC
Confidence 69999999999999999999887653 468999999762211 0 1 0112333443333111 122
Q ss_pred cceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcC-CCcEEE
Q 044119 574 LTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYA-QCTIGI 638 (816)
Q Consensus 574 ~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~A-pCsVgI 638 (816)
++..+..+ .+..+.|++.++|.++|+|++|+|++.... +. ++++.++|+++| ||+|-|
T Consensus 63 --~~~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~---~~~~Gs~~~~v~~~a~~~~v~v 122 (124)
T cd01987 63 --AEVVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWR---ELFRGSLVDRLLRRAGNIDVHI 122 (124)
T ss_pred --CEEEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHH---HHhcccHHHHHHHhCCCCeEEE
Confidence 33334445 678999999999999999999999887542 34 899999999999 999644
No 34
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.20 E-value=3.8e-06 Score=78.83 Aligned_cols=135 Identities=15% Similarity=0.155 Sum_probs=86.6
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCcc
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCV 572 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~v 572 (816)
-|||+|+.+.++....++.+..++.. ....++++|+++.............................+ .. ......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ 78 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEA-EE-AEAEGG 78 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeeccccccccccccccccccccchhhhhhhHHH-HH-Hhhhcc
Confidence 38999999999999999888887765 347899999998665432211000000000000000000000 11 000123
Q ss_pred ccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 573 SLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 573 ~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
. .......+ .+..+.|++.+++.++|+||+|.|++.... +. ++++.+++++++||+|-|
T Consensus 79 ~--~~~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~---~~~~gs~~~~l~~~~~~pVlv 138 (140)
T PF00582_consen 79 I--VIEVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGLE---RLLFGSVAEKLLRHAPCPVLV 138 (140)
T ss_dssp S--EEEEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTT---TSSSHHHHHHHHHHTSSEEEE
T ss_pred c--eeEEEEEe--eccchhhhhccccccceeEEEeccCCCCcc---CCCcCCHHHHHHHcCCCCEEE
Confidence 3 44445555 789999999999999999999999965432 34 999999999999999855
No 35
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.05 E-value=5.9e-05 Score=72.65 Aligned_cols=128 Identities=10% Similarity=0.112 Sum_probs=80.8
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCc---------h---hhhhhhHHHHHHHHHHhcCCCCce
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAE---------N---ECERQLDEYVMNEFRERNAGNACV 723 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~---------~---~~~~~~d~~~l~~~~~~~~~~~~v 723 (816)
+|++++-|.+..+.|+.+|.++++.++.+++++|++++..... + +..++.-++.++++.+... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 4899999999999999999999999999999999986421100 0 0111222345565554431 1234
Q ss_pred EEEEEEeC--ChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccc-hhhhhhhcCCCCCCc--ccEEEEe
Q 044119 724 VCREMMVN--DSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELG-IIGDMLASADFYGGT--MSVLVVH 798 (816)
Q Consensus 724 ~y~e~~v~--~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG-~igd~Las~d~~~~~--~SVLvvq 798 (816)
.+...++. +..+.+....+ ..+.||+|+|+++. + |+ ..--+| .+.+.+... ++ ++|||||
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~-~~~~dlIV~Gs~g~--~----~l----~~~~~gssva~~Vi~~----a~~~c~Vlvv~ 144 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVA-DHGITKLVMGASSD--N----HF----SMKFKKSDVASSVLKE----APDFCTVYVVS 144 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHH-HcCCCEEEEeccCC--C----ce----eecccCCchhHHHHhc----CCCCceEEEEe
Confidence 44444443 33443222222 24579999999864 2 12 223356 699999853 45 8999998
Q ss_pred e
Q 044119 799 C 799 (816)
Q Consensus 799 q 799 (816)
.
T Consensus 145 ~ 145 (146)
T cd01989 145 K 145 (146)
T ss_pred C
Confidence 5
No 36
>PRK15456 universal stress protein UspG; Provisional
Probab=98.04 E-value=3.9e-05 Score=73.77 Aligned_cols=133 Identities=10% Similarity=0.053 Sum_probs=81.9
Q ss_pred EEEEeecCC--CcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhh-cccccchhHHHHHHhcccccC
Q 044119 494 RILCGIHHE--DSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRR-RLKENSTDRIMRAVTNQTKSS 570 (816)
Q Consensus 494 riLv~v~~~--~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~-~~~~~~~~~i~~af~~~~~~~ 570 (816)
|||+|+... ++....++.+..++.. . .+++++|+++-..............+. .......++.++.+..+....
T Consensus 4 ~ILv~vD~S~~~~s~~al~~A~~la~~-~--~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK15456 4 TIIMPVDVFEMELSDKAVRHAEFLAQD-D--GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTID 80 (142)
T ss_pred cEEEeccCCchhHHHHHHHHHHHHHhc-C--CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCCC
Confidence 799999875 4677778877777643 2 379999998754211000000000000 000111222233222211113
Q ss_pred ccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 571 CVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 571 ~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
.+. +++.+... +..++|++.|++.++||||||-|++. .. +. +|++-++|++++||+|-|
T Consensus 81 ~~~--v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~---~~llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 81 PSR--IKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-IS---THLLGSNASSVIRHANLPVLV 140 (142)
T ss_pred Ccc--eEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-cc---ceecCccHHHHHHcCCCCEEE
Confidence 456 66555544 77899999999999999999999864 32 34 899999999999999744
No 37
>PRK15005 universal stress protein F; Provisional
Probab=98.02 E-value=9.8e-05 Score=70.87 Aligned_cols=127 Identities=14% Similarity=0.061 Sum_probs=78.7
Q ss_pred eEEEEeccCCcc--hHHHHHHHHHHhcCCCeEEEEEEEEeCCCC---------Cc-h--hhhhhhHHHHHHHHHHhcCCC
Q 044119 655 YDVAVFFLGGAD--DREVMALVSRMAGHPSLTVTVFKIDFKGNQ---------AE-N--ECERQLDEYVMNEFRERNAGN 720 (816)
Q Consensus 655 ~~i~v~f~GG~d--dreAL~~a~rma~~~~v~ltvvr~~~~~~~---------~~-~--~~~~~~d~~~l~~~~~~~~~~ 720 (816)
.+|++|+=|.++ .+.|+++|.++|+..+.+++++|++++... .+ . +..++.-++.++++.+....
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 81 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL- 81 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC-
Confidence 579999999987 479999999999999999999999864111 00 0 11112222455666555422
Q ss_pred CceEEEEEE-eCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 721 ACVVCREMM-VNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 721 ~~v~y~e~~-v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
..+.+...+ ..+..+.+....+ +.++||+|+|++++ . + ..--+|...+.+.. .++++||||+
T Consensus 82 ~~~~~~~~v~~G~p~~~I~~~a~-~~~~DLIV~Gs~~~--~-----~----~~~llGS~a~~vl~----~a~cpVlvVr 144 (144)
T PRK15005 82 PTDRVHVHVEEGSPKDRILELAK-KIPADMIIIASHRP--D-----I----TTYLLGSNAAAVVR----HAECSVLVVR 144 (144)
T ss_pred CCCceEEEEeCCCHHHHHHHHHH-HcCCCEEEEeCCCC--C-----c----hheeecchHHHHHH----hCCCCEEEeC
Confidence 222232222 2233333222222 35799999997632 1 2 23347999999996 4788999985
No 38
>PRK15005 universal stress protein F; Provisional
Probab=97.93 E-value=8.3e-05 Score=71.40 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=78.3
Q ss_pred EEEEeecCCCc--HHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCcccccc--chhhhhcccccchhHHHH-HHhcccc
Q 044119 494 RILCGIHHEDS--IHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAP--YDAQRRRLKENSTDRIMR-AVTNQTK 568 (816)
Q Consensus 494 riLv~v~~~~~--v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~--~~~~~~~~~~~~~~~i~~-af~~~~~ 568 (816)
|||+|+...++ ....++.+..++.. ...+++++|+++........... .+...........++.++ ..+. ..
T Consensus 4 ~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 80 (144)
T PRK15005 4 TILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKK-FK 80 (144)
T ss_pred cEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHH-hC
Confidence 69999988776 35666666666543 24689999999753221111000 000000000011112222 2222 11
Q ss_pred cCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 569 SSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 569 ~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
...+. ++..+.- -+-.+.|++.|++.++|||+||=|+. .. .+. +|++..+|++++||+|-|
T Consensus 81 ~~~~~--~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~---~~~llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 81 LPTDR--VHVHVEE---GSPKDRILELAKKIPADMIIIASHRP-DI---TTYLLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred CCCCc--eEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCC-Cc---hheeecchHHHHHHhCCCCEEE
Confidence 12344 5544443 46789999999999999999997743 22 234 899999999999999844
No 39
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.90 E-value=8.4e-05 Score=68.84 Aligned_cols=128 Identities=15% Similarity=0.166 Sum_probs=87.3
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCccc
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCVS 573 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~v~ 573 (816)
+||+|+.+.++...+++.+..++... ...++++|+.+-.+.... ..... .....++.++.+.......+++
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~---~~~~~----~~~~~~~~l~~~~~~~~~~~~~ 71 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSSAA---ELAEL----LEEEARALLEALREALAEAGVK 71 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcch---hHHHH----HHHHHHHHHHHHHHHHhcCCCc
Confidence 58999999999999999999988763 478999999765443221 00000 1112233344333311113566
Q ss_pred cceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 574 LTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 574 ~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
++.....+ . -.++|++.+++.++|++++|++++.... .. +++..+++++++||+|-+
T Consensus 72 --~~~~~~~~--~-~~~~i~~~~~~~~~dlvvig~~~~~~~~---~~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 72 --VETVVLEG--D-PAEAILEAAEELGADLIVMGSRGRSGLR---RLLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred --eEEEEecC--C-CHHHHHHHHHHcCCCEEEEcCCCCCccc---eeeeccHHHHHHhCCCCCEEe
Confidence 66555544 2 3899999999999999999999876431 23 889999999999999843
No 40
>PRK09982 universal stress protein UspD; Provisional
Probab=97.87 E-value=0.00011 Score=70.90 Aligned_cols=124 Identities=13% Similarity=0.149 Sum_probs=78.0
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCC---C----c-hh---hhhhhHHHHHHHHHHhcCCCCce
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQ---A----E-NE---CERQLDEYVMNEFRERNAGNACV 723 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~---~----~-~~---~~~~~d~~~l~~~~~~~~~~~~v 723 (816)
.+|+++.-|.++.+.|++.|.+||+.+++++++++++++... . . ++ ..++.-++.++++++... ...+
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 82 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPKT 82 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCcc
Confidence 589999999999999999999999999999999999864211 0 0 01 111112244556555432 1223
Q ss_pred EEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 724 VCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 724 ~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
.+ .....+..+.+....+ ..+.||+|+|+++ + |++.| +| +.+-+.. .++++||||.
T Consensus 83 ~~-~v~~G~p~~~I~~~A~-~~~aDLIVmG~~~---~----~~~~~-----~~-va~~V~~----~s~~pVLvv~ 138 (142)
T PRK09982 83 KL-RIERGEMPETLLEIMQ-KEQCDLLVCGHHH---S----FINRL-----MP-AYRGMIN----KMSADLLIVP 138 (142)
T ss_pred eE-EEEecCHHHHHHHHHH-HcCCCEEEEeCCh---h----HHHHH-----HH-HHHHHHh----cCCCCEEEec
Confidence 32 2223444555444444 3679999999642 2 22222 25 6777775 4788999996
No 41
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.87 E-value=0.00014 Score=68.02 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=77.7
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCChHH
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTE 735 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~ 735 (816)
||++++-|.+..++|+++|.++|++.+..++++++.++......+. .++.++++++.... ..+.+....-.|..+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~----~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~ 75 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEA----ERRRLAEALRLAEE-LGAEVVTLPGDDVAE 75 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHH----HHHHHHHHHHHHHH-cCCEEEEEeCCcHHH
Confidence 5899999999999999999999999999999999987532211111 12334444433211 123333222233334
Q ss_pred HHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEE
Q 044119 736 LMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVV 797 (816)
Q Consensus 736 ~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvv 797 (816)
.+....+ +.+.|++|+|.++. +.+ +.--+|...+.+... ..++.|||+
T Consensus 76 ~I~~~~~-~~~~dllviG~~~~--~~~--------~~~~~Gs~~~~v~~~---a~~~~v~v~ 123 (124)
T cd01987 76 AIVEFAR-EHNVTQIVVGKSRR--SRW--------RELFRGSLVDRLLRR---AGNIDVHIV 123 (124)
T ss_pred HHHHHHH-HcCCCEEEeCCCCC--chH--------HHHhcccHHHHHHHh---CCCCeEEEe
Confidence 3333222 35689999999974 322 334689999999863 237789986
No 42
>PRK09982 universal stress protein UspD; Provisional
Probab=97.79 E-value=0.00018 Score=69.34 Aligned_cols=129 Identities=11% Similarity=0.066 Sum_probs=77.8
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCcc--ccccchhhhhcccccchhHHHHHHhcccccCc
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAES--LSAPYDAQRRRLKENSTDRIMRAVTNQTKSSC 571 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~--~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 571 (816)
+||+|+...++....++-+..++.. .+.+++++|+++......+ .....+.... ......+..++....+. +.
T Consensus 5 ~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--~~ 79 (142)
T PRK09982 5 HIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPGIYFPATEDILQ-LLKNKSDNKLYKLTKNI--QW 79 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchhhhccchHHHHH-HHHHHHHHHHHHHHHhc--CC
Confidence 6999999988888888877777653 3578999999864321100 0000000000 00111222233222211 12
Q ss_pred cccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 572 VSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 572 v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
.. ++..+.. -+.++.||+.|++.++|||+||=| +... .. + ++-++|+++|+|+|-|
T Consensus 80 ~~--~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~-~~~~----~~~~-~va~~V~~~s~~pVLv 136 (142)
T PRK09982 80 PK--TKLRIER---GEMPETLLEIMQKEQCDLLVCGHH-HSFI----NRLM-PAYRGMINKMSADLLI 136 (142)
T ss_pred Cc--ceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCC-hhHH----HHHH-HHHHHHHhcCCCCEEE
Confidence 23 4444444 478999999999999999999954 3221 23 6 4999999999999744
No 43
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.79 E-value=0.00043 Score=63.99 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=78.5
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCc---hhhhhhhHHHHHHHHHHhc-CCCCceEEEEEEeC
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAE---NECERQLDEYVMNEFRERN-AGNACVVCREMMVN 731 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~---~~~~~~~d~~~l~~~~~~~-~~~~~v~y~e~~v~ 731 (816)
+|++++-+++..+.++.+|.+||+..+.+++++++.++..... ++.+....++.++++.... ..+.++.+.-. ..
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 79 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVL-EG 79 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEe-cC
Confidence 5889999999999999999999999999999999986532211 1112222345677776653 11223333221 22
Q ss_pred Ch-HHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEE
Q 044119 732 DS-TELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVV 797 (816)
Q Consensus 732 ~~-~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvv 797 (816)
+. .+.....++ .++|++|+|.++.. .| ..--.|.+.+.|... ++++||+|
T Consensus 80 ~~~~~i~~~~~~--~~~dlvvig~~~~~---------~~-~~~~~~~~~~~ll~~----~~~pvliv 130 (130)
T cd00293 80 DPAEAILEAAEE--LGADLIVMGSRGRS---------GL-RRLLLGSVAERVLRH----APCPVLVV 130 (130)
T ss_pred CCHHHHHHHHHH--cCCCEEEEcCCCCC---------cc-ceeeeccHHHHHHhC----CCCCEEeC
Confidence 22 222222222 56899999988641 12 223568889999853 56788874
No 44
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.78 E-value=0.047 Score=61.31 Aligned_cols=292 Identities=16% Similarity=0.166 Sum_probs=151.6
Q ss_pred CCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHH
Q 044119 98 KQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVP 177 (816)
Q Consensus 98 ~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p 177 (816)
.+|.++--++.|+++.. +|.++. +...+..+.+.+..+-+-+|+.=++.|++.++|.+++.+.. +..-.+.
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~~------p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~g 94 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLIDS------PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAVG 94 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcCC------CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHHH
Confidence 47888888888999886 455511 12355667777766666666666789999999998887644 3333455
Q ss_pred HHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCc------HHHHHHHHHhccccCChhHHHHHHHHHHHHH-HHHHHHH
Q 044119 178 FTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPF------FPVIAHAMNELNLLTSELGQLAISCSILSEL-LSWMNLI 250 (816)
Q Consensus 178 ~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts------~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di-~~~vll~ 250 (816)
.++|+.+++.+......++.+ -++.+++.|- +..+... ++. + .-..++++.-|- ..-+.+.
T Consensus 95 ~viG~~va~~l~~~~l~~~~w----k~ag~l~gsyiGGs~N~~Av~~a---l~~---~--~~~~~a~~aaDnv~~~~~~~ 162 (378)
T PF05684_consen 95 TVIGAVVAFLLFGGFLGPEGW----KIAGMLAGSYIGGSVNFVAVAEA---LGV---S--DSLFAAALAADNVVMALWFA 162 (378)
T ss_pred HHHHHHHHHHHHhhcccchHH----HHHHHHHhcccCchhHHHHHHHH---HCC---C--HHHHHHHHHHHHHHHHHHHH
Confidence 556777777665443111112 2222222221 2222222 231 1 223444444443 3322221
Q ss_pred HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHH--cCCCCCchhHHHHHHHHHHHHHHHH
Q 044119 251 LAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWI--------------IRT--TPEGKAVKEIYMVAMLLLPGITGAL 314 (816)
Q Consensus 251 ~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l--------------~~r--~~~~~~~~e~~~~~vl~~~~~~~~l 314 (816)
+...... ..+..-+|. .+. ..++++.. ..+...+...+....+
T Consensus 163 ~l~~l~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~ 221 (378)
T PF05684_consen 163 FLLALPP--------------------FARKFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVAL 221 (378)
T ss_pred HHHHHhh--------------------hhHHhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHH
Confidence 1100000 000000000 000 00011111 2233444444433333
Q ss_pred H----HHh-----Ch----hHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHH
Q 044119 315 S----DAT-----GL----NFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAIL 381 (816)
Q Consensus 315 a----e~l-----G~----~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~ 381 (816)
+ +.+ +. -.++-....|++..-. |..+.+ .--+.+ ..+++=+||..+|+..|+..+.+ .. ..
T Consensus 222 s~~la~~l~~~~~~~~~~~~~il~~tt~~l~~~~~-~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~--ap-~~ 295 (378)
T PF05684_consen 222 SHALAAWLPPLFAGISSSTWLILTVTTLGLATSFP-PFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLD--AP-SL 295 (378)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-chhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHH--hH-HH
Confidence 3 333 11 1334445556655433 444443 334445 67788889999999999988822 22 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccC
Q 044119 382 QIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVD 438 (816)
Q Consensus 382 ~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~ 438 (816)
+++.++.+....+..++.++++|++..+-..-+-. |.-|-.+......+++..+..
T Consensus 296 ~l~~~i~l~iH~~l~l~~~kl~k~~l~~~~vAS~A-nIGGpaTA~a~A~a~~~~Lv~ 351 (378)
T PF05684_consen 296 FLFGFIILAIHLLLMLILGKLFKIDLFELLVASNA-NIGGPATAPAVAAAKGPSLVP 351 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhhc-ccCCcchHHHHHHhcCCccHH
Confidence 34445556778888899999999999776665554 777776666555555543333
No 45
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.73 E-value=0.0047 Score=66.26 Aligned_cols=253 Identities=14% Similarity=0.084 Sum_probs=142.4
Q ss_pred HHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHh
Q 044119 143 GIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNE 222 (816)
Q Consensus 143 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~e 222 (816)
+..++|-.|-.+|++...+..||...+-+.-++++++++.+++.+++... -.....+.+-++++.+--..=..+..|
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g---~~Gls~laiiaa~~~~Ng~ly~al~~~ 127 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG---IFGLSGLAIVAAMSNSNGGLYAALMGE 127 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc---ccchHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34678889999999999888888888888888899988888888776321 112556667777777777777777888
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHH
Q 044119 223 LNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMV 302 (816)
Q Consensus 223 l~ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~ 302 (816)
+| -++|.|-..+ ..++|.=-+ ..+ .+.. .++.+ .| . .
T Consensus 128 yG-~~~d~gA~~~--~sl~~GPf~-----------------tm~---aLga----------~gLA~-ip----~--~--- 164 (312)
T PRK12460 128 FG-DERDVGAISI--LSLNDGPFF-----------------TML---ALGA----------AGLAN-IP----I--M--- 164 (312)
T ss_pred cC-CHhhhhHHhh--hhhccCcHH-----------------HHH---HHHH----------HHHhc-CC----h--H---
Confidence 87 3445443211 112221111 111 1100 01111 11 0 0
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHH
Q 044119 303 AMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQ 382 (816)
Q Consensus 303 ~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~ 382 (816)
.+. +.+=+++.|+++.|..+ .+.+.+++= ..+.+|++-+..|.++|++.+ -...+. .+
T Consensus 165 -~lv---------------~lilpILiGmilGNld~---~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I-~~~G~~-GI 222 (312)
T PRK12460 165 -ALV---------------AALLPLVLGMILGNLDP---DMRKFLTKG-GPLLIPFFAFALGAGINLSML-LQAGLA-GI 222 (312)
T ss_pred -HHH---------------HHHHHHHHHHHHhccch---hhHHHHhcc-ceEeHHHHHHHhcCCeeHHHH-HHhChH-HH
Confidence 000 12224667777777532 233333332 345899999999999999888 222232 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH--HHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHH
Q 044119 383 IIILAAYFARVAAIFLSLIFYKISIRNAILFG--LILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLI 460 (816)
Q Consensus 383 ~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lg--l~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli 460 (816)
++.++.++.-+..+++..|++|.+.+-++.+| ..-+.-|-..++...-.+ +-. .+.-++.|.+.++.|.+..|++
T Consensus 223 lL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~--~~~-~~~Ataqvaa~vivTail~P~~ 299 (312)
T PRK12460 223 LLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSL--APV-AAAATAQVAASVIVTAILTPLL 299 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhH--HHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 22233334445555566688898888888777 543333333332222111 111 1233444555555577777776
Q ss_pred -HhhcCC
Q 044119 461 -SMYYDP 466 (816)
Q Consensus 461 -~~ly~p 466 (816)
.|++|+
T Consensus 300 t~~~~k~ 306 (312)
T PRK12460 300 TSWVAKK 306 (312)
T ss_pred HHHHHHH
Confidence 555553
No 46
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.72 E-value=0.00022 Score=68.53 Aligned_cols=132 Identities=7% Similarity=0.030 Sum_probs=76.2
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCccc
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCVS 573 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~v~ 573 (816)
|||+|+...++....++.+..++... ..+++++|+.+-.....+......... ......++..+.++.......+.
T Consensus 5 ~ILvavD~S~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~ 80 (144)
T PRK15118 5 HILIAVDLSPESKVLVEKAVSMARPY--NAKVSLIHVDVNYSDLYTGLIDVNLGD--MQKRISEETHHALTELSTNAGYP 80 (144)
T ss_pred EEEEEccCChhHHHHHHHHHHHHHhh--CCEEEEEEEccChhhhhhhhhhcchHH--HHHHHHHHHHHHHHHHHHhCCCC
Confidence 69999998888888877777776432 358999998421101000000000000 00001111111222200112344
Q ss_pred cceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhhhHHHHHHHhhcCCCcEEE
Q 044119 574 LTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 574 ~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~~~~~n~~vl~~ApCsVgI 638 (816)
+....... .+-++.|++.|++.++||||+|=|++. . ..++++-.+|+++|||+|-|
T Consensus 81 --~~~~~~~~--G~p~~~I~~~a~~~~~DLIV~Gs~~~~-~----~~lgSva~~v~~~a~~pVLv 136 (144)
T PRK15118 81 --ITETLSGS--GDLGQVLVDAIKKYDMDLVVCGHHQDF-W----SKLMSSARQLINTVHVDMLI 136 (144)
T ss_pred --ceEEEEEe--cCHHHHHHHHHHHhCCCEEEEeCcccH-H----HHHHHHHHHHHhhCCCCEEE
Confidence 43222222 567899999999999999999998532 1 23789999999999999744
No 47
>PRK15456 universal stress protein UspG; Provisional
Probab=97.70 E-value=0.00061 Score=65.41 Aligned_cols=125 Identities=12% Similarity=0.022 Sum_probs=77.9
Q ss_pred eEEEEeccCCc--chHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC------c--h---hhhhhhHHHHHHHHHHhcCCCC
Q 044119 655 YDVAVFFLGGA--DDREVMALVSRMAGHPSLTVTVFKIDFKGNQA------E--N---ECERQLDEYVMNEFRERNAGNA 721 (816)
Q Consensus 655 ~~i~v~f~GG~--ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~------~--~---~~~~~~d~~~l~~~~~~~~~~~ 721 (816)
.+|++|+=|.+ ..+.|+++|.++|+.. .+++++|++++.... . + +..++.-++.++++.+.... .
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 80 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI-D 80 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-C
Confidence 58999999984 7999999999999875 589999998642110 0 1 11122223456666554322 2
Q ss_pred ceEEEEEEeCCh--HHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 722 CVVCREMMVNDS--TELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 722 ~v~y~e~~v~~~--~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
.+.+. ..+..| .+.+....+ +.+.||+|+|.++. + + +..-+|...+.+.. .++++||||+
T Consensus 81 ~~~v~-~~v~~G~~~~~I~~~a~-~~~~DLIVmG~~g~--~-~--------~~~llGS~a~~v~~----~a~~pVLvV~ 142 (142)
T PRK15456 81 PSRIK-QHVRFGSVRDEVNELAE-ELGADVVVIGSRNP--S-I--------STHLLGSNASSVIR----HANLPVLVVR 142 (142)
T ss_pred CcceE-EEEcCCChHHHHHHHHh-hcCCCEEEEcCCCC--C-c--------cceecCccHHHHHH----cCCCCEEEeC
Confidence 23322 223333 333222222 35799999999753 3 2 22347999999996 4789999985
No 48
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.70 E-value=0.00044 Score=66.50 Aligned_cols=125 Identities=12% Similarity=0.126 Sum_probs=77.4
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC------c--hhhhh---hhHHHHHHHHHHhcCCCCc
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQA------E--NECER---QLDEYVMNEFRERNAGNAC 722 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~------~--~~~~~---~~d~~~l~~~~~~~~~~~~ 722 (816)
..+|+++.=|.++.+.|+.+|..+|+..+.+++++++..+.... . ++.++ +.-.+.++++.... .
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----G 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 35899999999999999999999999999999999984321000 0 00011 11112334443321 1
Q ss_pred eEEEEEEe--CChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEeee
Q 044119 723 VVCREMMV--NDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCT 800 (816)
Q Consensus 723 v~y~e~~v--~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq~ 800 (816)
+...+..+ .+..+.+....+ +.++||+|+|++++ ++ . .+|...+.+.. .++++||||+..
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~-~~~~DLIV~Gs~~~-------~~----~--~lgSva~~v~~----~a~~pVLvv~~~ 140 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIK-KYDMDLVVCGHHQD-------FW----S--KLMSSARQLIN----TVHVDMLIVPLR 140 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHH-HhCCCEEEEeCccc-------HH----H--HHHHHHHHHHh----hCCCCEEEecCC
Confidence 22222333 344443333332 35799999999842 11 1 27888888886 478899999863
No 49
>PRK10116 universal stress protein UspC; Provisional
Probab=97.68 E-value=0.00049 Score=65.88 Aligned_cols=125 Identities=10% Similarity=0.138 Sum_probs=75.7
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCC---C-c---hhhh---hhhHHHHHHHHHHhcCCCCce
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQ---A-E---NECE---RQLDEYVMNEFRERNAGNACV 723 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~---~-~---~~~~---~~~d~~~l~~~~~~~~~~~~v 723 (816)
..+|++++-|.++.+.|+++|.++|+..+.++++++++++... . . ++.+ ++.-++.++++..+.. +
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDAD----Y 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----C
Confidence 3589999999999999999999999999999999998753211 0 0 0011 1111234455444321 2
Q ss_pred EEEEEEeCChHHHHHHHHhh-hcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 724 VCREMMVNDSTELMSSIRLI-ENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 724 ~y~e~~v~~~~~~~~~i~~~-~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
......+..|.....+++.. ..++||+|+|.++. + +++. ++..++.+.. .++++||||.
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~--~----~~~~------~~s~a~~v~~----~~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNH--S----FFSR------ASCSAKRVIA----SSEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcc--h----HHHH------HHHHHHHHHh----cCCCCEEEEe
Confidence 12222333343222333332 24799999998864 2 1222 2345777775 4789999996
No 50
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.60 E-value=0.01 Score=63.40 Aligned_cols=88 Identities=10% Similarity=0.080 Sum_probs=65.4
Q ss_pred HHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCCchHHHHHHHHHhccCcHHHHHHHH
Q 044119 143 GIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIP--GVNKGPFLYFFSVTLAKPFFPVIAHAM 220 (816)
Q Consensus 143 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~--~~~~~~~~l~lg~~ls~Ts~~vv~~iL 220 (816)
+.+++|-.|-++|++...+..||...+-+.-+++.++++.+++.+++...- +.......+.+-++++.+....=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 446788899999999999999999988899999999999988888764310 001225666777777777777777777
Q ss_pred HhccccCChhH
Q 044119 221 NELNLLTSELG 231 (816)
Q Consensus 221 ~el~ll~s~~g 231 (816)
.|++ -+++.|
T Consensus 131 ~~yG-d~~D~g 140 (314)
T PF03812_consen 131 GQYG-DEEDVG 140 (314)
T ss_pred HHhC-CHHHhH
Confidence 8877 244443
No 51
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.57 E-value=0.12 Score=56.95 Aligned_cols=88 Identities=15% Similarity=0.151 Sum_probs=58.2
Q ss_pred HhccCCChhHHHHHHHHhhccccccccccccccCCcchH-HHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHH
Q 044119 94 LKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEM-LLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVT 172 (816)
Q Consensus 94 l~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~-~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 172 (816)
+++.+++..+--|+.|+++|+......+.. .- ++. -.-+.+-.+|.++ .|.+++++++.+.+.+.+.+...
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~~~--~~--~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~ 97 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRDEE--KK--RGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTL 97 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccchhh--cc--chHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHH
Confidence 345689999999999999998542111110 10 111 1334666777664 49999999999999998877777
Q ss_pred HHHHHHHHHHHHH-HHHh
Q 044119 173 CLVVPFTISSFLT-SLLH 189 (816)
Q Consensus 173 ~~l~p~~lg~~~~-~~l~ 189 (816)
.+...+.++..++ ..++
T Consensus 98 ~v~~~~~~~~~~g~k~l~ 115 (335)
T TIGR00698 98 ILTSTFFLTVFLGSSRLK 115 (335)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 7776666665555 3443
No 52
>PRK10116 universal stress protein UspC; Provisional
Probab=97.45 E-value=0.0012 Score=63.08 Aligned_cols=134 Identities=9% Similarity=0.041 Sum_probs=79.9
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCcc
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCV 572 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~v 572 (816)
-|||+++...++....+..+..++... ...++++|.++....... ......+. ......++..+.++......++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 78 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPV--NGKISLITLASDPEMYNQ--FAAPMLED-LRSVMQEETQSFLDKLIQDADY 78 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccchh--hhHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence 379999998888888888887776542 357888999865321100 00100000 0001111111222220011234
Q ss_pred ccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhhhHHHHHHHhhcCCCcEEEE
Q 044119 573 SLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGIL 639 (816)
Q Consensus 573 ~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~~~~~n~~vl~~ApCsVgIl 639 (816)
. ...... ...+-.+.|++.|++.++||||+|=|++... ..+.++-.+|++++||+|-|+
T Consensus 79 ~--~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~----~~~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 79 P--IEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFF----SRASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred C--eEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHH----HHHHHHHHHHHhcCCCCEEEE
Confidence 3 322222 3478899999999999999999998876432 123467789999999998554
No 53
>PRK11175 universal stress protein UspE; Provisional
Probab=97.44 E-value=0.00061 Score=74.22 Aligned_cols=139 Identities=12% Similarity=0.068 Sum_probs=80.7
Q ss_pred cEEEEeecCCCcH-------HHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccc----cccchhhhhcccccchhHHHH
Q 044119 493 LRILCGIHHEDSI-------HNIINLLKALNPTEMSPICAYVVHLVELVGRAESL----SAPYDAQRRRLKENSTDRIMR 561 (816)
Q Consensus 493 ~riLv~v~~~~~v-------~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~----~~~~~~~~~~~~~~~~~~i~~ 561 (816)
-+||+++...+.. ...++.+..++.... ...++++|+.+........ ....+..+ ......+..++
T Consensus 153 ~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~-~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 229 (305)
T PRK11175 153 GKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLN-HAEVHLVNAYPVTPINIAIELPEFDPSVYND--AIRGQHLLAMK 229 (305)
T ss_pred CeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCc-CCceEEEEEecCcchhccccccccchhhHHH--HHHHHHHHHHH
Confidence 5899999864432 356677766654320 3578999998654321100 00000000 00001111122
Q ss_pred HHhcccccCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEEe
Q 044119 562 AVTNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGILV 640 (816)
Q Consensus 562 af~~~~~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIlV 640 (816)
.+.. . .++. ........ .+..+.|++.|+++++|+|+||.|++.... +. +|++.++|++++||+|-+.-
T Consensus 230 ~~~~-~--~~~~--~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~---~~llGS~a~~v~~~~~~pVLvv~ 299 (305)
T PRK11175 230 ALRQ-K--FGID--EEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLS---AAFLGNTAEHVIDHLNCDLLAIK 299 (305)
T ss_pred HHHH-H--hCCC--hhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCc---ceeecchHHHHHhcCCCCEEEEc
Confidence 1111 1 1233 32223333 567899999999999999999999887542 44 89999999999999985543
Q ss_pred cCCC
Q 044119 641 DSGL 644 (816)
Q Consensus 641 drg~ 644 (816)
.+|+
T Consensus 300 ~~~~ 303 (305)
T PRK11175 300 PDGY 303 (305)
T ss_pred CCCC
Confidence 4444
No 54
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.28 E-value=0.063 Score=59.08 Aligned_cols=157 Identities=13% Similarity=0.189 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHcC-CCCCchh----------------------H---HHHHHHHHHHHHHHHHHHhC-----hh
Q 044119 273 FFMFFIVRPAVKWIIRTTP-EGKAVKE----------------------I---YMVAMLLLPGITGALSDATG-----LN 321 (816)
Q Consensus 273 ~~~~~v~r~~~~~l~~r~~-~~~~~~e----------------------~---~~~~vl~~~~~~~~lae~lG-----~~ 321 (816)
+.++.++.|+.+|+++|+. +.++.++ . .+.++.+.+.+.+++.+.++ ++
T Consensus 170 v~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~l~~~~~~lP 249 (404)
T COG0786 170 VAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQLLKSLGLALP 249 (404)
T ss_pred HHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3566678899999998751 1001111 0 12333344445566666665 56
Q ss_pred HHHHHHHHhhhccCCCCc--hhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 044119 322 FMSGAVLTGLVVPAGPPL--GSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLS 399 (816)
Q Consensus 322 ~ilGaflaGL~i~~~~~~--~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 399 (816)
...++++.|+++.|--+. ...+.++.-+...++-+-+|....=|++.+..+ ..-.....+++.+-..+.-+.+.++.
T Consensus 250 ~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL-~~l~lpl~viL~vQ~i~m~lfa~fvt 328 (404)
T COG0786 250 LFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWEL-ADLALPLLVILAVQTIVMALFAIFVT 328 (404)
T ss_pred HHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999985221 112333433444778888888888888888887 22233444455555555677777788
Q ss_pred HHHhCCChHHHHHHHHHHh-HHHHHHHHHHHH
Q 044119 400 LIFYKISIRNAILFGLILN-IKGVIELLLLTE 430 (816)
Q Consensus 400 ~~~~~~~~~e~l~lgl~m~-~kG~v~l~~~~~ 430 (816)
.+..|-++..+..-+.-++ .-|...-+++++
T Consensus 329 fr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 329 FRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 8888888877665333222 133444455543
No 55
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.09 E-value=0.11 Score=56.48 Aligned_cols=138 Identities=12% Similarity=0.169 Sum_probs=82.5
Q ss_pred ccCCChhHHHHHHHHhhccccccccccccccCCcchHHH-HHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHH
Q 044119 96 RLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLL-VNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCL 174 (816)
Q Consensus 96 rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~-l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~ 174 (816)
...++..+--|+.|+++|+..++.-+.+. ++... -+.+-.+|.++ .|.++++.++.+.+.+.+.+....+
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~-----~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v 93 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFK-----PGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVV 93 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHH-----hHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHH
Confidence 46788888899999999973344322221 11222 34677777764 4999999999999999888888888
Q ss_pred HHHHHHHHHHH-HHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH
Q 044119 175 VVPFTISSFLT-SLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNL 249 (816)
Q Consensus 175 l~p~~lg~~~~-~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll 249 (816)
.+.+.++..++ ..++.+. ..+.++++-.++-...-++.+-.-.|--+.+ -..+++.-.+=+.++.+++
T Consensus 94 ~~~~~~~~~lg~r~~~l~~------~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~-~a~ava~V~lfg~vam~~~ 162 (305)
T PF03601_consen 94 ILTFLLTYWLGRRLFGLDR------KLAILIAAGTSICGASAIAATAPVIKAKEED-VAYAVATVFLFGTVAMFLY 162 (305)
T ss_pred HHHHHHHHHHHHHHhCCCH------HHHHHHHhhcccchHHHHHHHcccccCCCCc-eeeeehHHHHHHHHHHHHH
Confidence 88877777666 5554332 4555666555443322222222222222222 2344444445555555555
No 56
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.06 E-value=0.45 Score=53.43 Aligned_cols=91 Identities=14% Similarity=0.281 Sum_probs=53.6
Q ss_pred ChhHHHHHHHHhhhccCCC------CchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 044119 319 GLNFMSGAVLTGLVVPAGP------PLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFAR 392 (816)
Q Consensus 319 G~~~ilGaflaGL~i~~~~------~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K 392 (816)
.++..++|++.|+++.+.- ...++..+++ .++.+-+|.+..=+.+++..+.+ ......+++++..++.=
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~-~a~Plliil~~q~i~~~ 320 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLAD-YALPLLIILAVQTILMV 320 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3567899999999998742 1223333333 55566666666677788888722 12223333344444445
Q ss_pred HHHHHHHHHHhCCChHHHHHHHH
Q 044119 393 VAAIFLSLIFYKISIRNAILFGL 415 (816)
Q Consensus 393 ~~~~~l~~~~~~~~~~e~l~lgl 415 (816)
+...++..+.+|-++ |+..++.
T Consensus 321 ~f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 321 LFAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHHHHHhhhhhCCCh-hHHHHhh
Confidence 556667777888776 5544433
No 57
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.00 E-value=0.55 Score=51.51 Aligned_cols=300 Identities=16% Similarity=0.185 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCh--hHH-HHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhh
Q 044119 76 FLLQISLFSLISQLLHLALKRLKQPK--VVC-NVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTL 152 (816)
Q Consensus 76 ~llqi~lil~~~~l~~~ll~rl~~P~--iv~-~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gl 152 (816)
...|.++.+.++...++++..+++|. ..| -+++|++.+-... .++ .| ..+...|.+.+=-.+|.
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~-~l~-----~P-------~~l~~~~q~ilG~~ig~ 73 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGL-TLP-----LP-------RGLFKAGQVILGIMIGA 73 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc-ccc-----CC-------hHHHHHHHHHHHHHHhh
Confidence 46788889999999999999998764 445 5566666652111 111 11 34555666666667799
Q ss_pred ccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHH
Q 044119 153 KMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQ 232 (816)
Q Consensus 153 e~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~ 232 (816)
.+..+.+.. .++.+.+.+...+++...+...+|++..+.. .+ ...+ ++|. ++-.......+-+|.| .+.+..
T Consensus 74 ~~t~s~l~~-l~~~w~~~~~v~~~tl~~s~l~g~ll~r~~~-~~-~~Ta-~~gs--~PGgas~m~~iA~d~g-Ad~~~V- 145 (352)
T COG3180 74 SLTPSVLDT-LKSNWPIVLVVLLLTLLSSILLGWLLKRFSI-LP-GNTA-FLGS--SPGGASAMVSIAQDYG-ADLRLV- 145 (352)
T ss_pred hcCHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHHHHHhcC-CC-cchh-hHhc--CCchHHHHHHHHHHhC-CChhHH-
Confidence 988876643 3444445555555666666666666644331 11 0111 1111 1111111122224444 122111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCchhHHHHHHHH
Q 044119 233 LAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPEG------KAVKEIYMVAMLL 306 (816)
Q Consensus 233 l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~------~~~~e~~~~~vl~ 306 (816)
++.+.+-........-++.+.... .++..++ .+.....+.+.+.
T Consensus 146 ----------------------------Al~Q~lRvl~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l~~ 195 (352)
T COG3180 146 ----------------------------ALMQYLRVLFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLLIL 195 (352)
T ss_pred ----------------------------HHHHHHHHHHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHHHH
Confidence 111111111111122222221110 0111111 0111122445555
Q ss_pred HHHHHHHHHHHhChh--HHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccch-hhHHHHHH
Q 044119 307 LPGITGALSDATGLN--FMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNW-KAFAILQI 383 (816)
Q Consensus 307 ~~~~~~~lae~lG~~--~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~-~~~~~~~~ 383 (816)
..++.+.+...+++. .++|+++.|..+.-......++-+-+ ..+-.-+.-..+|.++|-..+... ......++
T Consensus 196 ~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl----~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v 271 (352)
T COG3180 196 AALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL----LAVAQALIGALIGSRFDRSILREAKRLLPAILV 271 (352)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH----HHHHHHHHHHHHcccccHHHHHHhHhhcchHHH
Confidence 666666777777765 58888888888876642222222222 222333455678999987665221 22233444
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 044119 384 IILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRT 433 (816)
Q Consensus 384 ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~ 433 (816)
.++..++.-...+++.+++.+.++.+++. ..+|-|.-+++....+.+
T Consensus 272 ~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 272 SIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALG 318 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcC
Confidence 55555666777788888889999987654 357888888877766654
No 58
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.80 E-value=0.051 Score=65.31 Aligned_cols=132 Identities=13% Similarity=0.057 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCC-CCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHH
Q 044119 301 MVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAG-PPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFA 379 (816)
Q Consensus 301 ~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~-~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~ 379 (816)
+.+.++.+.+...++..+|+++++|=.++|+++... -..-. -.+.++.+ ..+-+.++...+|+++|+..++ ....
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~--~~~~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHF-AEFGVVLMLFVIGLELDPQRLW--KLRR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHH-HHHHHHHHHHHHHhCcCHHHHH--HHHH
Confidence 445566677888889999999999999999999643 11111 12345555 6777778888899999998872 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccC
Q 044119 380 ILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVD 438 (816)
Q Consensus 380 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~ 438 (816)
.++.+....++.-++..+..++++|.+|..++.+|..++.-.+ .+ ...+..+.+.++
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-ai-v~~~L~e~~~l~ 142 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AI-AMQAMNERNLMV 142 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HH-HHHHHHHhcccc
Confidence 1222222222223333445567789999999999888754433 22 244444555443
No 59
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.75 E-value=0.017 Score=64.17 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=76.9
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEEEeCCCCCch-hhhhhhHHHHHHHHHHhcC-----CCCceEE
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHP--SLTVTVFKIDFKGNQAEN-ECERQLDEYVMNEFRERNA-----GNACVVC 725 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~~~~~~~~-~~~~~~d~~~l~~~~~~~~-----~~~~v~y 725 (816)
.+||++|+-|-+..+.|+++|..+|+.. +.+++++++++....... +...+.-++.+++.++... ....+.+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~v 84 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVTI 84 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCce
Confidence 4689999999999999999999999884 699999999874211111 1111112234444443221 1134555
Q ss_pred EEEEeC---------ChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCC
Q 044119 726 REMMVN---------DSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADF 787 (816)
Q Consensus 726 ~e~~v~---------~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~ 787 (816)
+..++. +..+++....+ +.++||||+|..-...+ -.|-|-++.--|++.+.
T Consensus 85 e~~vv~~~~~~~~~G~pae~Iv~~Ae-e~~aDLIVm~~~~~~~~----------~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 85 ETALLGTDEYLFGPGDYAEVLIAYAE-EHGIDRVVLDPEYNPGG----------TAPMLQPLERELARAGI 144 (357)
T ss_pred EEEEEeccccccCCCCHHHHHHHHHH-HcCCCEEEECCCCCCCC----------CCcccchHHHHHHhcCC
Confidence 555443 44555444444 36799999999864333 23556677777776654
No 60
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.70 E-value=0.063 Score=57.19 Aligned_cols=88 Identities=14% Similarity=0.143 Sum_probs=61.7
Q ss_pred HHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCCchHHHHHHHHHhccCcHHHHHHHH
Q 044119 143 GIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIP--GVNKGPFLYFFSVTLAKPFFPVIAHAM 220 (816)
Q Consensus 143 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~--~~~~~~~~l~lg~~ls~Ts~~vv~~iL 220 (816)
+..++|-.|-.+|++...+..||...+-+.-+++.++++.+++.+++...- +.-.....+.+-++++.|--..=+.+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 345788899999999988888888888788888899888888888764320 001124556666667777666666777
Q ss_pred HhccccCChhH
Q 044119 221 NELNLLTSELG 231 (816)
Q Consensus 221 ~el~ll~s~~g 231 (816)
.|++ -++|.|
T Consensus 131 ~qyG-d~~D~g 140 (314)
T TIGR00793 131 QQYG-TKEEAG 140 (314)
T ss_pred HHcC-CHhhhh
Confidence 7777 344444
No 61
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.65 E-value=1.1 Score=48.88 Aligned_cols=144 Identities=13% Similarity=0.109 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccChhHHhhhhhh---HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhc
Q 044119 133 LLVNTMSIMGGIYFIFIVTLKMDKARILKTVRN---GWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLA 209 (816)
Q Consensus 133 ~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~---~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls 209 (816)
.+++..-.+++.++||..|+.+..+++++..++ .......++++-=.+++++++.+. . ..-+..|..+.
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l------~~~l~~Gl~ll 105 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--L------PPELAVGLLLL 105 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--C------CHHHHHhHHhe
Confidence 344445588899999999999999988765444 333333444333334444444442 1 23344444433
Q ss_pred cCcHH----HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH-HHHHhh-cc----c-hHHHHHHHHHHHHHHHHHHH
Q 044119 210 KPFFP----VIAHAMNELNLLTSELGQLAISCSILSELLSWMNL-ILAMIF-KA----N-NHLLKTEITFCALAFFMFFI 278 (816)
Q Consensus 210 ~Ts~~----vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll-~~~~~~-~~----~-~~~l~~~l~~v~~~~~~~~v 278 (816)
.+.+. .+...+..-+ --+.++.+.++.+++.++. .+.... ++ + ...++.++..++.=++.+.+
T Consensus 106 ~~~Pggv~S~~~t~lAkGn------ValsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~ 179 (319)
T COG0385 106 GCCPGGVASNAMTYLAKGN------VALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQL 179 (319)
T ss_pred eeCCCchhHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 32222 3333333322 2566777778888888777 222112 22 1 34455665555555566677
Q ss_pred HHHHHHHHHHHc
Q 044119 279 VRPAVKWIIRTT 290 (816)
Q Consensus 279 ~r~~~~~l~~r~ 290 (816)
.|+....+.++.
T Consensus 180 ~r~~~~~~~~~~ 191 (319)
T COG0385 180 LRPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHHH
Confidence 777776665553
No 62
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.61 E-value=0.16 Score=56.99 Aligned_cols=318 Identities=15% Similarity=0.133 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHh---hccccccccccccccCCcchHHHHHHHHHHHHHHHHHH----
Q 044119 77 LLQISLFSLISQLLHLALKRLKQPKVVCNVLAGII---LGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFI---- 149 (816)
Q Consensus 77 llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIi---lGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~---- 149 (816)
+--++++.+++.+++++=+| +|-+=.|+=+|.+ ++|+.+-... ++|++..+..+.+-+-.=.+.+|.
T Consensus 31 ~g~~a~~~v~G~~l~~IG~r--iPi~k~yiGGg~il~~f~ps~Lv~~~----~ip~~~~~~v~~fm~~~~Fl~ffIa~LI 104 (414)
T PF03390_consen 31 IGGFAVMMVLGFLLGEIGDR--IPILKDYIGGGAILCIFVPSALVYFG----LIPESVVEAVTNFMKGSNFLYFFIAALI 104 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ChhhhccCChHHHHHHHHHHHHHHcC----CCCHHHHHHHHHHhccCChHHHHHHHHH
Confidence 44445555666666666664 4444444444433 3455442211 455444444444432221222333
Q ss_pred hh--hccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHh-----ccCcHHHHHHHHHh
Q 044119 150 VT--LKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTL-----AKPFFPVIAHAMNE 222 (816)
Q Consensus 150 ~G--le~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~l-----s~Ts~~vv~~iL~e 222 (816)
.| +.||.+.+.|...|-+...+.+.+..++++.+++..++..+. ...+.+.+-. ..-+.|...-.=+-
T Consensus 105 ~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~-----~~i~~i~lPIMgGG~GaGavPLS~~Ya~~ 179 (414)
T PF03390_consen 105 VGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK-----DAIFYIVLPIMGGGMGAGAVPLSQIYAEA 179 (414)
T ss_pred HhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHhhhcCCCccccHhHHHHHHHHH
Confidence 34 489999999999999888889999999998888888876542 1222222111 11111211111111
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----C-----
Q 044119 223 LNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTTPE----G----- 293 (816)
Q Consensus 223 l~ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~----~----- 293 (816)
++...++.-..++.+.++.++++++.- -++..+-++.|+ |
T Consensus 180 ~g~~~~~~~s~~ipa~~lgNi~AIi~a-------------------------------glL~~lg~~~P~ltGnG~L~~~ 228 (414)
T PF03390_consen 180 LGQDAEEYFSQLIPALTLGNIFAIIFA-------------------------------GLLNKLGKKKPKLTGNGQLLKG 228 (414)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHhccCCCCCCCceEEeC
Confidence 222222333334444444444444433 111222222110 0
Q ss_pred ------------CCchhHHHH----HHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCC---CCchhHHHHHhHHHHHHH
Q 044119 294 ------------KAVKEIYMV----AMLLLPGITGALSDATGLNFMSGAVLTGLVVPAG---PPLGSAVVKKSEIIMENI 354 (816)
Q Consensus 294 ------------~~~~e~~~~----~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~---~~~~~~l~~kle~~~~~~ 354 (816)
++.+-..+. +....-.+...+...+++|+..-..++=.++.-. |+.-++=.++...|...-
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~ 308 (414)
T PF03390_consen 229 GDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKN 308 (414)
T ss_pred CccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHH
Confidence 000000111 1111111222223344555443333332222211 111223334555555666
Q ss_pred HHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH-HHHHHHHhHHHH-HHHHHHHHh
Q 044119 355 FMPFFYIHIGQL-FNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNA-ILFGLILNIKGV-IELLLLTEW 431 (816)
Q Consensus 355 ~~PlfF~~~G~~-idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~-l~lgl~m~~kG~-v~l~~~~~~ 431 (816)
+.+...+-+|+. +|++.+...-++. -+++++...++-.+++++..++.|+-+-|+ +.-|+.|+.+|. -+++++.-+
T Consensus 309 lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa 387 (414)
T PF03390_consen 309 LTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAA 387 (414)
T ss_pred HHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehh
Confidence 666677777888 8987772222333 344455566778888999999999866665 567777766544 556666655
Q ss_pred hhcccc
Q 044119 432 RTHKYV 437 (816)
Q Consensus 432 ~~~~~i 437 (816)
...+++
T Consensus 388 ~RM~Lm 393 (414)
T PF03390_consen 388 NRMELM 393 (414)
T ss_pred hhcccc
Confidence 555544
No 63
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.60 E-value=0.69 Score=50.64 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH-HHHHHHhHHHH-HHHHH
Q 044119 351 MENIFMPFFYIHIGQL-FNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAI-LFGLILNIKGV-IELLL 427 (816)
Q Consensus 351 ~~~~~~PlfF~~~G~~-idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l-~lgl~m~~kG~-v~l~~ 427 (816)
...+.-|+.+. +|.. +|+..+-+.-+|.. +++.+...++-..+.++.+|+.|+-+-|+- .-|+.|+.+|. -++++
T Consensus 325 sk~~t~~Lm~g-iGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaV 402 (438)
T COG3493 325 SKNLTWPLMAG-IGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAV 402 (438)
T ss_pred HHhhHHHHHHh-hhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHH
Confidence 34555566554 4555 78766622223332 233334456778888999999998666655 45699887765 45555
Q ss_pred HHHhhhcccc
Q 044119 428 LTEWRTHKYV 437 (816)
Q Consensus 428 ~~~~~~~~~i 437 (816)
++-+-..+++
T Consensus 403 LsAa~RM~Lm 412 (438)
T COG3493 403 LSAADRMELM 412 (438)
T ss_pred hhhcchhccc
Confidence 5555444444
No 64
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.6 Score=50.69 Aligned_cols=175 Identities=16% Similarity=0.146 Sum_probs=86.7
Q ss_pred hHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHH--
Q 044119 102 VVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFT-- 179 (816)
Q Consensus 102 iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~-- 179 (816)
+.-.+++|+.+|-..-+......+ -+...++.--.+|+.+.|+=.=+++|.+++++..++.-. -+.+..+-++
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~~l~~----~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~-L~lsL~~Nwii~ 94 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQLLGK----LEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKP-LILSLFVNWIIG 94 (342)
T ss_pred HHHHHHHHHHHHhcccchhhhccc----ceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchH-HHHHHHHHHHHH
Confidence 555577888888443321111000 012334445567787777777789999999876655322 2223333333
Q ss_pred --HHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH-HHHHhh-
Q 044119 180 --ISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNL-ILAMIF- 255 (816)
Q Consensus 180 --lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll-~~~~~~- 255 (816)
+.+.+++++....+ +.....+++|++=|+ |-..+-. ++.+.+. ..++..-.+||++.++++ ...-.+
T Consensus 95 P~lm~~la~~fl~~~p--ey~~GlILlglApC~-aMVivw~-----~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l 165 (342)
T COG0798 95 PLLMFALAWFFLPDEP--EYRAGLILLGLAPCI-AMVIVWS-----GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFL 165 (342)
T ss_pred HHHHHHHHHHHhCCCH--HHHHHHHHHHhhhhH-HHHHHHH-----hhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444432221 111222233332222 2222222 2223332 456666778999999888 332222
Q ss_pred cc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 044119 256 KA--NNHLLKTEITFCALAFFMFFIVRPAVKWIIRTT 290 (816)
Q Consensus 256 ~~--~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~ 290 (816)
+. ..-.++.++..++..+.+-++.+.+.+++..|.
T Consensus 166 ~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 166 GVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred hhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 133445555555555556666666666666664
No 65
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.47 E-value=0.12 Score=61.89 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCC-CchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHH
Q 044119 301 MVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGP-PLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFA 379 (816)
Q Consensus 301 ~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~-~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~ 379 (816)
..+.++.+.++..++..+|+++++|=.++|+++.... ..-. -.+.++.+ ..+-+.++...+|+++|+..++....
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~-- 85 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-DVDEILHF-SELGVVFLMFIIGLELNPSKLWQLRR-- 85 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-cHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHH--
Confidence 3445555666778888999999999999999996531 1111 12345555 56677777788899999988732211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhH
Q 044119 380 ILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNI 419 (816)
Q Consensus 380 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~ 419 (816)
....+....++.-++.......++|++|..++.+|..+..
T Consensus 86 ~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 86 SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1111111111111212223345568999999988876543
No 66
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.46 E-value=0.96 Score=49.64 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhhccChhHHhhhhhhH---HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHh----
Q 044119 136 NTMSIMGGIYFIFIVTLKMDKARILKTVRNG---WSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTL---- 208 (816)
Q Consensus 136 ~~la~iGl~~llF~~Gle~d~~~l~~~~~~~---~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~l---- 208 (816)
+.....++..++|..|+.++.+++++..++. ...-...+++.=++++++...+.... ...+..|...
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~------~~~l~~Gl~~~~~l 103 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL------PPELALGLLILACL 103 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC------CHHHHHHHHHHhhC
Confidence 4667778888889999999999998755443 22222223222233444444443211 1223333332
Q ss_pred ccC-cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH
Q 044119 209 AKP-FFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNL 249 (816)
Q Consensus 209 s~T-s~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll 249 (816)
-.| +..++..-.. +.+ -..++..+.++.++++++.
T Consensus 104 PtTv~S~v~~T~~A-----gGN-~a~Al~~~~~snllgv~lt 139 (313)
T PF13593_consen 104 PTTVSSSVVLTRLA-----GGN-VALALFNAVLSNLLGVFLT 139 (313)
T ss_pred CchhhHHHHHHHHc-----CCC-HHHHHHHHHHHhhhhHhHH
Confidence 222 3333332221 111 2567777888888888877
No 67
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.45 E-value=0.13 Score=55.22 Aligned_cols=128 Identities=14% Similarity=0.181 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhChhHHHHHHHHhhhccCCCCch-hHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHH
Q 044119 307 LPGITGALSDATGLNFMSGAVLTGLVVPAGPPLG-SAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIII 385 (816)
Q Consensus 307 ~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~-~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii 385 (816)
.....+.+++.++++.++|-.++|+++.... ++ -.-.+.++.+ ..+-+.++....|+++|++.+. +.+.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~--~~~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLW--KLRKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHH--HHHHHHHHHH
Confidence 3455678889999999999999999997531 11 0111335555 5667778888899999998882 2332233333
Q ss_pred HHHHHHH-HHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcc
Q 044119 386 LAAYFAR-VAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQ 440 (816)
Q Consensus 386 ~~~~~~K-~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~ 440 (816)
...++.- ++.++...++++.++.+++.+|..+++-. .-++..+..|.+..+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~ 132 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTP 132 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccCh
Confidence 3333333 44445566778999999999999877553 23344445555555444
No 68
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.40 E-value=0.13 Score=61.06 Aligned_cols=134 Identities=18% Similarity=0.205 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCC-CchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHH
Q 044119 302 VAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGP-PLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAI 380 (816)
Q Consensus 302 ~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~-~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~ 380 (816)
..++..+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|+..+... ...
T Consensus 12 ~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~--~~~ 87 (558)
T PRK10669 12 VGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAV--KSI 87 (558)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHH--hhH
Confidence 344566677788888999999999999999996542 11111 1334555 566667777788999999887221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcch
Q 044119 381 LQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQT 441 (816)
Q Consensus 381 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~ 441 (816)
.....+..++.=++.+++....++.++.+++.+|..++.-.. .+++.+..+.|.++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 88 AIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 111122222223344445566778999999999988766333 34455666777666544
No 69
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.16 E-value=1.2 Score=49.24 Aligned_cols=36 Identities=6% Similarity=-0.049 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHH
Q 044119 385 ILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIK 420 (816)
Q Consensus 385 i~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~k 420 (816)
+++-.+.-+..+++.++.+|++.+|+..+.+--+.|
T Consensus 252 v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~q 287 (328)
T TIGR00832 252 LLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASN 287 (328)
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhh
Confidence 334445566777778889999999988877665444
No 70
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.10 E-value=0.22 Score=56.51 Aligned_cols=147 Identities=17% Similarity=0.179 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccC-CCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhH
Q 044119 300 YMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPA-GPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAF 378 (816)
Q Consensus 300 ~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~-~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~ 378 (816)
.+..++..+...+++.+.+|+++++|-.++|+++.+ +...-.+-.+.++.+ ..+=.-++...+|+.+|+..++.....
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~l-aelGvi~LlF~~GLE~~~~~l~~~~~~ 88 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELL-AELGVVFLLFLIGLEFDLERLKKVGRS 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHH-HHHhHHHHHHHHHHCcCHHHHHHhchh
Confidence 345566666777799999999999999999999997 211122222333333 444445566778999999888322111
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHH
Q 044119 379 AILQIIILAAYFARVAAI--FLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTA 451 (816)
Q Consensus 379 ~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll 451 (816)
. ......+.+..=++.+ +... +++.++.+++.+|..+..-.. -+.+.+..|.|....+.-..++...++
T Consensus 89 ~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~ 159 (397)
T COG0475 89 V-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVF 159 (397)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1 2222222222232222 2223 589999999999988765432 133444556666665554444444433
No 71
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.07 E-value=0.11 Score=49.42 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=82.0
Q ss_pred ceEEEEecc-CCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCc-------h-------hhhhhhHHHHHHHHHHhcC
Q 044119 654 SYDVAVFFL-GGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAE-------N-------ECERQLDEYVMNEFRERNA 718 (816)
Q Consensus 654 ~~~i~v~f~-GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~-------~-------~~~~~~d~~~l~~~~~~~~ 718 (816)
..+|++++- |.+..+.|++.+..++...+..++++.+........ . .......++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 458899998 999999999999999999988888887765321100 0 1112233445555554332
Q ss_pred CCC-ceEEEEEEeCCh-HHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEE
Q 044119 719 GNA-CVVCREMMVNDS-TELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLV 796 (816)
Q Consensus 719 ~~~-~v~y~e~~v~~~-~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLv 796 (816)
... ...-.+....++ .+.+..... .+++||+++|.++. + .|.+ --+|...+.+.. .++++|||
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~i~~~a~-~~~adliV~G~~g~--~-------~l~~-~llGsvs~~v~~----~~~~pVlv 149 (154)
T COG0589 85 AAGVPVVETEVVEGSPSAEEILELAE-EEDADLIVVGSRGR--S-------GLSR-LLLGSVAEKVLR----HAPCPVLV 149 (154)
T ss_pred HcCCCeeEEEEecCCCcHHHHHHHHH-HhCCCEEEECCCCC--c-------cccc-eeeehhHHHHHh----cCCCCEEE
Confidence 111 111122233344 344443444 35799999999742 2 2222 568999999996 47889999
Q ss_pred Eeee
Q 044119 797 VHCT 800 (816)
Q Consensus 797 vqq~ 800 (816)
++..
T Consensus 150 v~~~ 153 (154)
T COG0589 150 VRSE 153 (154)
T ss_pred EccC
Confidence 9753
No 72
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=95.94 E-value=0.11 Score=49.64 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=79.2
Q ss_pred cEEEEeec-CCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhh----cccccchhHHHHHHhccc
Q 044119 493 LRILCGIH-HEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRR----RLKENSTDRIMRAVTNQT 567 (816)
Q Consensus 493 ~riLv~v~-~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~----~~~~~~~~~i~~af~~~~ 567 (816)
.+|++.+. ..+........+...+.... ..++.+++++-.+.............. .......++..+..+...
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLG--APLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcC--CeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 46778877 66666666666666555433 455577777655432222111100000 001122344444444311
Q ss_pred ccCccccce-eeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 568 KSSCVSLTS-QPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 568 ~~~~v~~~v-~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
....+. . +....-. ..-.+.|+..|.+.++|+|++|-+++++.+ .- ++++-++|++++||+|-+
T Consensus 84 ~~~~~~--~~~~~~~~g--~~~~~~i~~~a~~~~adliV~G~~g~~~l~---~~llGsvs~~v~~~~~~pVlv 149 (154)
T COG0589 84 EAAGVP--VVETEVVEG--SPSAEEILELAEEEDADLIVVGSRGRSGLS---RLLLGSVAEKVLRHAPCPVLV 149 (154)
T ss_pred HHcCCC--eeEEEEecC--CCcHHHHHHHHHHhCCCEEEECCCCCcccc---ceeeehhHHHHHhcCCCCEEE
Confidence 111222 2 2222222 333699999999999999999998777643 24 999999999999999744
No 73
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.81 E-value=0.3 Score=53.29 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHH----HhChhHHHHHHHHhhhccC-CCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhh
Q 044119 303 AMLLLPGITGALSD----ATGLNFMSGAVLTGLVVPA-GPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKA 377 (816)
Q Consensus 303 ~vl~~~~~~~~lae----~lG~~~ilGaflaGL~i~~-~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~ 377 (816)
+.+++.....++++ ..++++.+=|.+.|+++.| .....+.+.+-++.- ...++.+=-++.|.++++.++ ....
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i-~~~G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDI-LALG 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHH-HHhC
Confidence 33444444444544 4677888889999999998 544445555545533 567888889999999999888 2223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhc
Q 044119 378 FAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTH 434 (816)
Q Consensus 378 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~ 434 (816)
+...+..++...+.=.++.++..+.+|++.+.+..+|...+.-|.-+++...-..+.
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 322333333333344444455559999999999999999888888777666544444
No 74
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.37 E-value=1.5 Score=48.32 Aligned_cols=118 Identities=10% Similarity=0.075 Sum_probs=74.8
Q ss_pred ChhHHHHHHHHhhhccCCCCchhHHHHHhHHH---HHHHHHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHH
Q 044119 319 GLNFMSGAVLTGLVVPAGPPLGSAVVKKSEII---MENIFMPFFYIHIGQL-FNVYSITNWKAFAILQIIILAAYFARVA 394 (816)
Q Consensus 319 G~~~ilGaflaGL~i~~~~~~~~~l~~kle~~---~~~~~~PlfF~~~G~~-idl~~l~~~~~~~~~~~ii~~~~~~K~~ 394 (816)
++|+..-+.++|.++....=..+.+.++-..+ ...-+.+..++-+|+. +|+..+.+.-++ ..+++++...++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~-~~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW-QFVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch-hHhhhHHHHHHHHHH
Confidence 67888888899998887654556666665544 2333344444445665 777666222223 345555666778889
Q ss_pred HHHHHHHHhCCChHHH-HHHHHHHhHHHH-HHHHHHHHhhhcccc
Q 044119 395 AIFLSLIFYKISIRNA-ILFGLILNIKGV-IELLLLTEWRTHKYV 437 (816)
Q Consensus 395 ~~~l~~~~~~~~~~e~-l~lgl~m~~kG~-v~l~~~~~~~~~~~i 437 (816)
++++.+++.|+-+-|+ +.-|+.|+.+|. -+++++.-+...+++
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lm 326 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLI 326 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccc
Confidence 9999999999766555 556778766554 455665555555544
No 75
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.33 E-value=0.31 Score=58.00 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchh--HHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHH
Q 044119 303 AMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGS--AVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAI 380 (816)
Q Consensus 303 ~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~--~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~ 380 (816)
+++++..+++.++..+|++.+++-.++|+++.....-.- .-.+-.+.+ ..+.++++....|+++|+..+ . ..+..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l-~-~~~~~ 89 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSF-R-PALGP 89 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHH-H-HHHHH
Confidence 444555566777888999999999999999976521101 111233444 778889999999999999888 2 23333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhCCChHHHHHHHHHHhHHHH
Q 044119 381 LQIIILAAYF-ARVAAIFLSLIFYKISIRNAILFGLILNIKGV 422 (816)
Q Consensus 381 ~~~ii~~~~~-~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~ 422 (816)
...+..+.++ .=.+.+++..++++++|.+++.+|..+++-..
T Consensus 90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 3333333332 23333455566789999999999988776544
No 76
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.27 E-value=5.9 Score=43.58 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHHhChh--HHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccc-hhh
Q 044119 301 MVAMLLLPGITGALSDATGLN--FMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITN-WKA 377 (816)
Q Consensus 301 ~~~vl~~~~~~~~lae~lG~~--~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~-~~~ 377 (816)
+.+.+....+.+++.+.+++. .++|+++.+.++.-.....-.+-+.+ ..+..-+.=..+|.+++...+.. ...
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l----~~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL----VNAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 455556677788888888875 58888888777765422111121222 22333345567899998777622 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Q 044119 378 FAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHK 435 (816)
Q Consensus 378 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~ 435 (816)
+...++..++.+..-.+.+++.++++++++.+.+. .+.|-|.-|+.+.....+.+
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCC
Confidence 44455556666677888888999999999887654 35899999988776665543
No 77
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.22 E-value=0.18 Score=51.10 Aligned_cols=125 Identities=14% Similarity=0.241 Sum_probs=82.9
Q ss_pred HHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccCh-----hHHhhhhhhHHHHHHHHHHHH
Q 044119 103 VCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDK-----ARILKTVRNGWSVSVTCLVVP 177 (816)
Q Consensus 103 v~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~-----~~l~~~~~~~~~ia~~~~l~p 177 (816)
++.+++|+++|-..... ....+...+..+.+++|.+|+++-- +.+++.+++++.+.+..++.+
T Consensus 2 l~~li~Gi~lG~~~~~~------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGS 69 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGS 69 (191)
T ss_pred eeeHHHHHHHHHHhccc------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34567888888432211 1222667888899999999998854 456777789999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH
Q 044119 178 FTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNL 249 (816)
Q Consensus 178 ~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll 249 (816)
++.+.+++.+++..+ ..++.++.-+.= +.....++.|++ +.+.|.++.-+=++-+++++++.
T Consensus 70 llgg~l~~~ll~~~~------~~~lav~sG~Gw--YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~ 131 (191)
T PF03956_consen 70 LLGGLLASLLLGLSL------KESLAVASGFGW--YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILI 131 (191)
T ss_pred HHHHHHHHHHhcCCH------HHHHHHHccCcH--HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888774333 444444443322 333334445543 45778877777777777776666
No 78
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.16 E-value=0.6 Score=51.33 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=50.3
Q ss_pred HHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCC--CCCchHHHHHHHHHhccCcHHHHHHHHHh
Q 044119 145 YFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIP--GVNKGPFLYFFSVTLAKPFFPVIAHAMNE 222 (816)
Q Consensus 145 ~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~--~~~~~~~~l~lg~~ls~Ts~~vv~~iL~e 222 (816)
.++|-.|-.+|++...+..||...+.+.-+.+..+++.+.+.+++..+- +.......+....++..+...+-...+.+
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~ 134 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQ 134 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6788999999999988888888888777788888877777766553210 00001233344445555555544444444
Q ss_pred cc
Q 044119 223 LN 224 (816)
Q Consensus 223 l~ 224 (816)
++
T Consensus 135 ~g 136 (326)
T PRK05274 135 YG 136 (326)
T ss_pred hC
Confidence 44
No 79
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.01 E-value=0.78 Score=45.57 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHH--hccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChh---
Q 044119 83 FSLISQLLHLAL--KRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKA--- 157 (816)
Q Consensus 83 il~~~~l~~~ll--~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~--- 157 (816)
.+.+..+++.+- +++++-...+-+++|+++|-. +.. ..++ -.....+.+.++|+.+|++.+|++--++
T Consensus 5 ~i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~--~~~---~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~ 77 (169)
T PF06826_consen 5 GIALGYLLGRIKIPGGFSLGAAGGVLFVGLILGAL--GRT---GPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFS 77 (169)
T ss_pred HHHHHHHhcceeeccceeccccHHHHHHHHHHHHh--hhc---cCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333 556677777889999999842 111 0011 1246677899999999999999988776
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHHHHHHHHh
Q 044119 158 RILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPVIAHAMNE 222 (816)
Q Consensus 158 ~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 222 (816)
.+++.+.+...+++.-.++|.+++..+++++.+. ......|. +=+.|++|.+....+.
T Consensus 78 ~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l-------~~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 78 SLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKL-------NPGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CHHHHHHHHHccccCcHHHHHHHHh
Confidence 4456666777777777788888888877744332 22333443 4456777777665554
No 80
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.00 E-value=0.33 Score=52.76 Aligned_cols=116 Identities=13% Similarity=0.085 Sum_probs=84.2
Q ss_pred HHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 044119 313 ALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFAR 392 (816)
Q Consensus 313 ~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K 392 (816)
...+..|.++..=|.+.|+++.+.++.+.....-++.- ...++.+=.++.|+++++.++ ..-.+. .+.+.+..+..-
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i-~~~G~~-~v~~~~~~l~~t 106 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDI-ADVGGS-GVLIIAITLSST 106 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHH-HHcCcc-HHHHHHHHHHHH
Confidence 33456667788889999999997755555554455543 777888888999999999888 222222 344445555667
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHh
Q 044119 393 VAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEW 431 (816)
Q Consensus 393 ~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~ 431 (816)
++.+++..+++|++++.++.+|..-+.-|.-+++..+-.
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pv 145 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPV 145 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCc
Confidence 777888888999999999999999888887776655433
No 81
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.86 E-value=2 Score=43.34 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhccChhHHhhhhhhHHH
Q 044119 141 MGGIYFIFIVTLKMDKARILKTVRNGWS 168 (816)
Q Consensus 141 iGl~~llF~~Gle~d~~~l~~~~~~~~~ 168 (816)
+.+.+.||..|++++++++++..|+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~ 29 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL 29 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence 4577899999999999999987766543
No 82
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.81 E-value=7.7 Score=42.45 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=71.1
Q ss_pred HhccCCChhHHHHHHHHhhccccccccc-cccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHH
Q 044119 94 LKRLKQPKVVCNVLAGIILGPSVLGHFE-RWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVT 172 (816)
Q Consensus 94 l~rl~~P~iv~~IlaGIilGP~~lg~~~-~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~ 172 (816)
....++|..+--|+.||++|.. ...+ .... .-.-.-..+-.+|.++ .|.+++++++...+.+.+.+-..
T Consensus 32 ~~~~~l~al~lAIllGi~l~~l--~~~~~~~~~----GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~ 101 (334)
T COG2855 32 SIHLGLSALTLAILLGILLGIL--PQIPAQTSA----GITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAI 101 (334)
T ss_pred hhhcCchHHHHHHHHHHHHhcc--ccchhhhcc----chhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHH
Confidence 3446799999999999999932 2222 2211 0012234455666664 48999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCc
Q 044119 173 CLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPF 212 (816)
Q Consensus 173 ~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts 212 (816)
.+..++++++.++.+++.+. ..++++|+-.|+..
T Consensus 102 ~l~~t~~~~~~lg~~lgld~------~~a~Lia~GssICG 135 (334)
T COG2855 102 TLSSTFLFAYFLGKLLGLDK------KLALLIAAGSSICG 135 (334)
T ss_pred HHHHHHHHHHHHHHHhCCCH------HHHHHHHccchhhH
Confidence 88888888888887665443 56777776655543
No 83
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.52 E-value=0.99 Score=56.17 Aligned_cols=42 Identities=7% Similarity=0.067 Sum_probs=31.2
Q ss_pred CCcceEEEEeccCCcchHHHHHHHHHHh--cCCCeEEEEEEEEe
Q 044119 651 THFSYDVAVFFLGGADDREVMALVSRMA--GHPSLTVTVFKIDF 692 (816)
Q Consensus 651 ~~~~~~i~v~f~GG~ddreAL~~a~rma--~~~~v~ltvvr~~~ 692 (816)
.++..||++.+-+-.|-+..+.++.-.. +++...+.++|++.
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLve 498 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVE 498 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEe
Confidence 3446799999997777777788876653 34568999999875
No 84
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.50 E-value=1.3 Score=48.97 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHH-----hChhHHHHHHHHhhhccCCC--CchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchh
Q 044119 304 MLLLPGITGALSDA-----TGLNFMSGAVLTGLVVPAGP--PLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWK 376 (816)
Q Consensus 304 vl~~~~~~~~lae~-----lG~~~ilGaflaGL~i~~~~--~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~ 376 (816)
.+.+.+.+.++++. .++++.+=|.+.|+++.|.. +.......-++ +....++-+=-++.|+++++.++ -..
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i-~~~ 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYI-ADV 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHH-HHh
Confidence 33444444455443 47888888999999998842 22222222222 44566777778889999999887 222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 044119 377 AFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRT 433 (816)
Q Consensus 377 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~ 433 (816)
.+......++.....=+++.++..+.+|++.+.+..+|..-+.-|.-+++...-..+
T Consensus 88 G~~~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~ 144 (335)
T TIGR00698 88 GPNEIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK 144 (335)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccC
Confidence 332222222223333344455555889999999999999988888877766554433
No 85
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.38 E-value=12 Score=42.61 Aligned_cols=91 Identities=12% Similarity=0.208 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHhhhccCCCCch--hHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHH-HHHHH
Q 044119 319 GLNFMSGAVLTGLVVPAGPPLG--SAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYF-ARVAA 395 (816)
Q Consensus 319 G~~~ilGaflaGL~i~~~~~~~--~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~-~K~~~ 395 (816)
.++...+|++.|+++.+.-+.. ..+.++.-+...++.+-+|.+..=|.+++..+ .+.+...+++.+..++ .=+..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l--~~~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWEL--ADLAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998852211 11222233333677777788888888998888 2344334444433333 34455
Q ss_pred HHHHHHHhCCChHHHHH
Q 044119 396 IFLSLIFYKISIRNAIL 412 (816)
Q Consensus 396 ~~l~~~~~~~~~~e~l~ 412 (816)
.++..+..|-+ -|+-.
T Consensus 322 ~fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHHhHHhccch-HHHHH
Confidence 56666767766 66655
No 86
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=94.17 E-value=0.25 Score=55.08 Aligned_cols=128 Identities=11% Similarity=0.021 Sum_probs=77.5
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhc--cc---
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTN--QT--- 567 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~--~~--- 567 (816)
-|||+|+...++....++-+..++...+...+++++|+++...- ....+. .....+++++..+. +.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~----~~~~~~-----~~~~~eelle~~~~~~~~~l~ 76 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAV----DPEGQD-----ELAAAEELLERVEVWATEDLG 76 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccc----ccchhH-----HHHHHHHHHHHHHHHHHHhhh
Confidence 47999999999999888877777754212479999999884221 111110 01122334443332 11
Q ss_pred -ccCccccceeeeEEec-----CCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCc
Q 044119 568 -KSSCVSLTSQPFKIIA-----PYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCT 635 (816)
Q Consensus 568 -~~~~v~~~v~~~~~vs-----p~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCs 635 (816)
...++. ++..+... -.-+.++.|++.|+|.++|+|+|+=..+... ..+ ++.+-.. |.++-|+
T Consensus 77 ~~~~gV~--ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~---~~~~~~~~~~~-~~~~~~~ 145 (357)
T PRK12652 77 DDASSVT--IETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGG---TAPMLQPLERE-LARAGIT 145 (357)
T ss_pred cccCCCc--eEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCC---CCcccchHHHH-HHhcCCc
Confidence 113577 77666552 1148899999999999999999996555431 122 4444333 4555555
No 87
>PRK03818 putative transporter; Validated
Probab=94.02 E-value=1.3 Score=52.42 Aligned_cols=133 Identities=11% Similarity=0.177 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhh
Q 044119 73 FPVFLLQISLFSLISQLLHLAL-KRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVT 151 (816)
Q Consensus 73 l~~~llqi~lil~~~~l~~~ll-~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~G 151 (816)
....++-+++.+.+..+++.+- +.+++- +.|-+++|+++|-.. +.+..-. ......++.++|+.+|+|.+|
T Consensus 4 ~~~~~~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~----~~~~~~~---~~~~~~~~~~~gl~lFv~~vG 75 (552)
T PRK03818 4 IALTVSILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFV----SQFGLTL---DSDMLHFIQEFGLILFVYTIG 75 (552)
T ss_pred hhHHHHHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccc----cccCccc---ChHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555421 223344 478889999988521 1111001 145677899999999999999
Q ss_pred hccChhHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHHHHHHHH
Q 044119 152 LKMDKARI---LKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPVIAHAMN 221 (816)
Q Consensus 152 le~d~~~l---~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 221 (816)
++.-++.+ ++.+.+...+++.-.+++.++++++.++++.. .....|+ +=+.|++|.+.....
T Consensus 76 l~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 76 IQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIP--------LPVMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred hcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHhhccccccHHHHHHHH
Confidence 99988755 55555666667666677777766665444322 2233343 445677777766554
No 88
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.90 E-value=1.1 Score=54.51 Aligned_cols=71 Identities=8% Similarity=0.170 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCChHHHHHHHHHHhHHHHH
Q 044119 351 MENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLI-F-YKISIRNAILFGLILNIKGVI 423 (816)
Q Consensus 351 ~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~-~-~~~~~~e~l~lgl~m~~kG~v 423 (816)
...+.+++-.+..|++++...+ ...|..+..+++.+...-++.+.+.++ + .+++|..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~L--rr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYM--LKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 3677888888889999999988 334544433343343444444444444 3 499999999999999887654
No 89
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.45 E-value=0.78 Score=54.15 Aligned_cols=118 Identities=16% Similarity=0.254 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCch-hHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHH
Q 044119 303 AMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLG-SAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAIL 381 (816)
Q Consensus 303 ~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~-~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~ 381 (816)
..++.+.+...+++.+++++.++-+++|+++...+... -.+.. + +...+++|......|+++|...+ ...+..+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~-~~~~~~Lp~lLF~~g~~~~~~~l--~~~~~~i 79 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--E-IVLFLFLPPLLFEAAMNTDLREL--RENFRPI 79 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--H-HHHHHHHHHHHHHHHhcCCHHHH--HHHHHHH
Confidence 34444555566777788888888888888876431111 01111 1 22457889999999999999988 2333333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHH
Q 044119 382 QIII-LAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIEL 425 (816)
Q Consensus 382 ~~ii-~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l 425 (816)
..+. ...++.-.+.++...+..++||..++.+|.++++...+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 3332 2333333343444444679999999999999988876554
No 90
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=93.12 E-value=0.99 Score=53.63 Aligned_cols=116 Identities=13% Similarity=0.143 Sum_probs=75.4
Q ss_pred ccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhH---HhhhhhhHHHHHHH
Q 044119 96 RLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKAR---ILKTVRNGWSVSVT 172 (816)
Q Consensus 96 rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~---l~~~~~~~~~ia~~ 172 (816)
++.+-...|-+++|+++|- ++.......-.| .....++.++|+.+|++.+|+.--++. +++.+.+...++..
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~~~p---~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~ 486 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFGNIP---SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIV 486 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcceecC---HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH
Confidence 3445556788899999985 222111000012 456778999999999999999887754 45666666777777
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHHHHHHHHhc
Q 044119 173 CLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPVIAHAMNEL 223 (816)
Q Consensus 173 ~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el 223 (816)
-.++|.+++..+++++.+. ......|+ +=+.|++|.+.......
T Consensus 487 ~~~~~~~~~~~~~~~~~~~-------~~~~~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 487 VTILPLIITMLIGKYVLKY-------DPALLLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHHHHHHHHHHHhCC-------CHHHHHHHhhccCCCcHHHHHHHHhc
Confidence 7778888887777544332 22344554 45678888877765543
No 91
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=92.94 E-value=16 Score=39.56 Aligned_cols=50 Identities=12% Similarity=0.243 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhhccChhHHhhhhhh--HHHHHHH-HH-HHHHHHHHHHHHHH
Q 044119 138 MSIMGGIYFIFIVTLKMDKARILKTVRN--GWSVSVT-CL-VVPFTISSFLTSLL 188 (816)
Q Consensus 138 la~iGl~~llF~~Gle~d~~~l~~~~~~--~~~ia~~-~~-l~p~~lg~~~~~~l 188 (816)
+.-..+.+.||..|+.++.+++++..++ ....++. .+ +.|.+. +.++..+
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~ 62 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVF 62 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 3334488899999999999999887663 3333333 23 455543 5555444
No 92
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.82 E-value=0.73 Score=54.71 Aligned_cols=95 Identities=11% Similarity=0.146 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHH-hccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhH
Q 044119 80 ISLFSLISQLLHLAL-KRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKAR 158 (816)
Q Consensus 80 i~lil~~~~l~~~ll-~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~ 158 (816)
+++++.+..+++.+- +.+++-.+.+-+++|+++|-.... ++ +.+.++|+++|+|.+|++.-+..
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~-i~--------------~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ-ID--------------PGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC-CC--------------hHHHHHHHHHHHHHhhhccCHHH
Confidence 333444444444332 346677788999999999964322 11 12677999999999999999987
Q ss_pred HhhhhhhHH---HHHHHHHHHHHHHHHHHHHHHh
Q 044119 159 ILKTVRNGW---SVSVTCLVVPFTISSFLTSLLH 189 (816)
Q Consensus 159 l~~~~~~~~---~ia~~~~l~p~~lg~~~~~~l~ 189 (816)
++..+|+.+ .+++.-+++.+++..+++++++
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g 113 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVSGLITVYALAKIFG 113 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 755444444 4444444444444445454443
No 93
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.30 E-value=3.8 Score=40.15 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhChh--HHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchh-hHHHH
Q 044119 305 LLLPGITGALSDATGLN--FMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWK-AFAIL 381 (816)
Q Consensus 305 l~~~~~~~~lae~lG~~--~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~-~~~~~ 381 (816)
+......+++.+.+|+. .++|+.+++.++.-.....-.+-+.+ ..+-.-+.-..+|.+++...+.... .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~----~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWL----LALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHH----HHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 44455566677788876 68888888887774422211222222 2333444567789999987773322 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhh
Q 044119 382 QIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWR 432 (816)
Q Consensus 382 ~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~ 432 (816)
+...+..++.-++.+++..+..++++.+++ +| ..|-|.-++......+
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 555666667788888899999999998886 33 4788888877665443
No 94
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=91.98 E-value=3 Score=46.83 Aligned_cols=105 Identities=13% Similarity=0.159 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHh--ccCCChhHHHHHHHHhhcccc--ccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccC
Q 044119 80 ISLFSLISQLLHLALK--RLKQPKVVCNVLAGIILGPSV--LGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMD 155 (816)
Q Consensus 80 i~lil~~~~l~~~ll~--rl~~P~iv~~IlaGIilGP~~--lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d 155 (816)
+.+.+.++..+...++ .+.+|..++-+++|+++.... ++... -..+..+.++++.+-+++..+=..++
T Consensus 226 i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~--------id~~~i~~I~~~sL~~fl~~almsl~ 297 (368)
T PF03616_consen 226 ILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYK--------IDRKTIDRISGISLDLFLAMALMSLK 297 (368)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCccc--------CCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444445555555555 467999999999999997532 11111 12677899999999999988878999
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHhhhC
Q 044119 156 KARILKTVRNGWSVSVTCLVVPFTISSFLT-SLLHSYI 192 (816)
Q Consensus 156 ~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~-~~l~~~~ 192 (816)
+..+.+..-..+.+-+.+.++..+....+. ..+++.+
T Consensus 298 l~~l~~~a~Plliil~~q~i~~~~f~~fv~fr~~gkdy 335 (368)
T PF03616_consen 298 LWVLADYALPLLIILAVQTILMVLFAYFVTFRVMGKDY 335 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh
Confidence 999999888877766677666655544333 3444433
No 95
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=91.70 E-value=2.4 Score=41.48 Aligned_cols=114 Identities=15% Similarity=0.080 Sum_probs=66.4
Q ss_pred CCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhh----hHHHHHHHH
Q 044119 98 KQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVR----NGWSVSVTC 173 (816)
Q Consensus 98 ~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~----~~~~ia~~~ 173 (816)
++-...+-+++|+++|-. +.......-. .......+.++|+.+|++.+|++--.+.+....+ ....++..-
T Consensus 20 ~LG~~~G~L~vgL~~G~~--~~~~p~~~~~---p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHF--GATGPLTWYI---PFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred EecccHHHHHHHHHHHhc--cccCCcceec---ChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 344477889999999853 3211111001 1356778999999999999999998775543322 233344444
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHHHHHHHHhc
Q 044119 174 LVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPVIAHAMNEL 223 (816)
Q Consensus 174 ~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~el 223 (816)
.++|.+++..+..++.+. ......|+ +=+.|++|.+....+..
T Consensus 95 ~~~~~~~~~~~~~~~~~~-------~~~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 95 TVVPTLLVAVALIKLLRI-------NYALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHHHHHHhCC-------CHHHHHHHHhccccChHHHHHHHHHh
Confidence 445555555554433322 22344444 45668888877766544
No 96
>PRK10490 sensor protein KdpD; Provisional
Probab=91.32 E-value=0.9 Score=57.19 Aligned_cols=122 Identities=11% Similarity=0.065 Sum_probs=81.4
Q ss_pred CCCcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhc-ccc
Q 044119 490 DSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTN-QTK 568 (816)
Q Consensus 490 ~~e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~-~~~ 568 (816)
...-|||||+....+...+++-+.-++... ....+++|+..-..+. ... ...+++.+.++. +..
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~--~a~~~~l~V~~~~~~~----~~~---------~~~~~l~~~~~lA~~l 312 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARL--GSVWHAVYVETPRLHR----LPE---------KKRRAILSALRLAQEL 312 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhc--CCCEEEEEEecCCcCc----CCH---------HHHHHHHHHHHHHHHc
Confidence 356789999999999999999888887653 4679999975321110 011 123444454444 332
Q ss_pred cCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCC-CcEEEE
Q 044119 569 SSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQ-CTIGIL 639 (816)
Q Consensus 569 ~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~Ap-CsVgIl 639 (816)
.+.+. +... +++++.|.+.|++++++.||||=+++... - .+++.+++++.+| -+|=|.
T Consensus 313 Ga~~~------~~~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~-----~~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 313 GAETA------TLSD--PAEEKAVLRYAREHNLGKIIIGRRASRRW-----WRRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred CCEEE------EEeC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC-----ccCCCHHHHHHHhCCCCCEEEE
Confidence 22222 3333 89999999999999999999997654321 1 2479999999999 455443
No 97
>PRK04972 putative transporter; Provisional
Probab=91.23 E-value=1.6 Score=51.86 Aligned_cols=120 Identities=14% Similarity=0.135 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHH-HhccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChh
Q 044119 79 QISLFSLISQLLHLA-LKRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKA 157 (816)
Q Consensus 79 qi~lil~~~~l~~~l-l~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~ 157 (816)
-+++.+.+..+++.+ ++.+++-...|-+++|+++|-.... .+ ..+.++|+.+|+|.+|++.-+.
T Consensus 16 ~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~-~~--------------~~~~~~gl~lF~~~vG~~~Gp~ 80 (558)
T PRK04972 16 LLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS-IN--------------TDALNLGFMLFIFCVGVEAGPN 80 (558)
T ss_pred HHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC-CC--------------hHHHHHHHHHHHHHHhhhhhHH
Confidence 334444444444433 2446677778999999999964322 11 1235899999999999999876
Q ss_pred HH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHHHHHHHH
Q 044119 158 RI---LKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPVIAHAMN 221 (816)
Q Consensus 158 ~l---~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~ 221 (816)
.+ ++.+.+...+++.-.+++++++..++++++... ....|+ +=+.|++|.+.....
T Consensus 81 F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 81 FFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI--------GLTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHHhhccccCcHHHHHHHH
Confidence 55 555556666677667777777776666543322 233332 345566676666544
No 98
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.06 E-value=4.6 Score=39.52 Aligned_cols=96 Identities=20% Similarity=0.294 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHhccCCC--hhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHH
Q 044119 82 LFSLISQLLHLALKRLKQP--KVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARI 159 (816)
Q Consensus 82 lil~~~~l~~~ll~rl~~P--~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l 159 (816)
+.+.++.+.+.+++++|+| ..+|-++++.++.- .+..+ ...-..+.+++.+++=-.+|.+++.+.+
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~--~~~~~----------~~~P~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSL--AGGLE----------ITLPPWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHh--cCCcc----------CCCCHHHHHHHHHHHHHHHHccCCHHHH
Confidence 3556777888999999998 66677777666652 22111 0111245566777777788999999988
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044119 160 LKTVRNGWSVSVTCLVVPFTISSFLTSLLHS 190 (816)
Q Consensus 160 ~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~ 190 (816)
++..+. +..++...++..+++.+.++++..
T Consensus 70 ~~~~~~-~~~~l~~~~~~l~~~~~~~~~l~~ 99 (156)
T TIGR03082 70 AELKRL-WPAALLSTVLLLALSALLAWLLAR 99 (156)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 765543 333445555555566666666544
No 99
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=89.87 E-value=22 Score=36.88 Aligned_cols=112 Identities=11% Similarity=0.051 Sum_probs=76.0
Q ss_pred chhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHh
Q 044119 339 LGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILN 418 (816)
Q Consensus 339 ~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~ 418 (816)
-++.+..-+++=+-.+-.|+| =++..+ ...|.....-++++.+.-++.+++.++++|.+.. +.. .+.
T Consensus 60 g~~~i~~lLgPAtVAlAvPLY-------kq~~~i--k~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~--Sl~ 126 (230)
T COG1346 60 GGQWINFLLGPATVALAVPLY-------KQRHLI--KRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LIL--SLL 126 (230)
T ss_pred ccHHHHHHHHHHHHHHhhHHH-------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHH--Hhc
Confidence 345555666665566777776 123334 3466666666777777788888999999887654 333 357
Q ss_pred HHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhh
Q 044119 419 IKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMY 463 (816)
Q Consensus 419 ~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~l 463 (816)
||....-+...+..+.|-+.+-+-..++++-++...+.+++.+.+
T Consensus 127 PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 127 PKSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888888888888877666666677777444445555554
No 100
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.85 E-value=2.8 Score=45.46 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=56.0
Q ss_pred hHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHH
Q 044119 102 VVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTIS 181 (816)
Q Consensus 102 iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg 181 (816)
.+--++.|+++|+.. ++++ +.++.-..+++.++.|..|..+|++.+.+.+.+.+.+++..+.+++.++
T Consensus 169 lilpILiGmilGNld----~~~~--------~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~ 236 (312)
T PRK12460 169 ALLPLVLGMILGNLD----PDMR--------KFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFN 236 (312)
T ss_pred HHHHHHHHHHHhccc----hhhH--------HHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 455577888888621 1121 2222223347888899999999999999999999999999998888888
Q ss_pred HHHHHHHh
Q 044119 182 SFLTSLLH 189 (816)
Q Consensus 182 ~~~~~~l~ 189 (816)
+.+..+++
T Consensus 237 ~~i~rllg 244 (312)
T PRK12460 237 IFADRLVG 244 (312)
T ss_pred HHHHHHhC
Confidence 88877663
No 101
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=87.74 E-value=39 Score=35.36 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=70.2
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHH
Q 044119 341 SAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIK 420 (816)
Q Consensus 341 ~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~k 420 (816)
+.+..-+.+-+-.+-+|+| =+...+ .+.|..+.+-++++.+.-++++++.++++|.+.. + -..|.+|
T Consensus 65 ~~l~~lLgPAtVALAvPLY-------~q~~~l--k~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~--~--~~Sl~pK 131 (232)
T PRK04288 65 DIISFFLEPATIAFAIPLY-------KKRDVL--KKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA--V--MASMLPQ 131 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHhhH
Confidence 4444555555566666766 123334 2355555566666667778888888898887653 3 3346899
Q ss_pred HHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhh
Q 044119 421 GVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMY 463 (816)
Q Consensus 421 G~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~l 463 (816)
....-+...+..+.|-+..-+-..++++-++-..+.+++++++
T Consensus 132 SVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 132 AATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998888888888887665555556666666444444555553
No 102
>PRK10490 sensor protein KdpD; Provisional
Probab=86.93 E-value=7.4 Score=49.15 Aligned_cols=123 Identities=11% Similarity=0.169 Sum_probs=79.5
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC-chhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCC
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQA-ENECERQLDEYVMNEFRERNAGNACVVCREMMVND 732 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~-~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~ 732 (816)
..||+|..-|+|+.+..++.|.|||+.-+..++++++..+.... ..+..+.+.+ .+ ++.++.. .. +.+..-.|
T Consensus 250 ~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~-~~-~lA~~lG--a~--~~~~~~~d 323 (895)
T PRK10490 250 RDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILS-AL-RLAQELG--AE--TATLSDPA 323 (895)
T ss_pred CCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHH-HH-HHHHHcC--CE--EEEEeCCC
Confidence 46899999999999999999999999999999999987543221 1122223322 22 2444432 22 22333345
Q ss_pred hHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 733 STELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 733 ~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
..+++....+ ..+-+-+|+|+++. + -| . -.|.+.|.|... ..+--|.||-
T Consensus 324 va~~i~~~A~-~~~vt~IViG~s~~--~-------~~--~-~~~s~~~~l~r~---~~~idi~iv~ 373 (895)
T PRK10490 324 EEKAVLRYAR-EHNLGKIIIGRRAS--R-------RW--W-RRESFADRLARL---GPDLDLVIVA 373 (895)
T ss_pred HHHHHHHHHH-HhCCCEEEECCCCC--C-------CC--c-cCCCHHHHHHHh---CCCCCEEEEe
Confidence 5555444444 25688999999975 2 25 1 136788888854 3456788883
No 103
>PRK04972 putative transporter; Provisional
Probab=86.90 E-value=7.9 Score=46.05 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhc-----cCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhcc
Q 044119 80 ISLFSLISQLLHLALKR-----LKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKM 154 (816)
Q Consensus 80 i~lil~~~~l~~~ll~r-----l~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~ 154 (816)
+++-+++..+++.+-=+ +++-.--|.+++|+++|- ++.......-.| .....++.++|+.+|+..+|+.-
T Consensus 386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~--~~~~~~~~~~~p---~~a~~~l~~~GL~lFla~vGl~a 460 (558)
T PRK04972 386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGF--LRANHPTFGYIP---QGALNMVKEFGLMVFMAGVGLSA 460 (558)
T ss_pred HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHh--ccccCCCceeeC---HHHHHHHHHHhHHHHHHHHHHhh
Confidence 33444444455544333 334445678999999984 222211111112 56778899999999999999977
Q ss_pred Chh---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHHHHHHHHh
Q 044119 155 DKA---RILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPVIAHAMNE 222 (816)
Q Consensus 155 d~~---~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~iL~e 222 (816)
-.+ .+++.+.+.+.++..-.++|.+++..+++++.+. .....+|+ +=+.|++|.+......
T Consensus 461 G~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~-------~~~~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 461 GSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRM-------NRALLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHhCCCCCcHHHHHHHhh
Confidence 664 4455677777788888888888888888666543 22344554 4566888877665544
No 104
>COG2985 Predicted permease [General function prediction only]
Probab=86.79 E-value=6.3 Score=44.93 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhccChh---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHH
Q 044119 140 IMGGIYFIFIVTLKMDKA---RILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPV 215 (816)
Q Consensus 140 ~iGl~~llF~~Gle~d~~---~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~v 215 (816)
++|+++|.+.+|+|--+. .++|.+++-..+++.- ++.+..+++.+..... . ...+..|. +=+.||+|.
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~-~---~~~~~~Gm~sGAlTsTP~ 133 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG-I---DLGLIAGMFSGALTSTPG 133 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC-C---CHHHhhhhhcccccCCch
Confidence 899999999999999876 4567777766555543 4444555555554432 1 12222222 234455555
Q ss_pred H---HHHHHhccccCChhHH--HHHHHHHHHHHHHHHHH
Q 044119 216 I---AHAMNELNLLTSELGQ--LAISCSILSELLSWMNL 249 (816)
Q Consensus 216 v---~~iL~el~ll~s~~g~--l~ls~a~i~Di~~~vll 249 (816)
. ..+|+|++....-.-+ +.-+.+-.--++++++.
T Consensus 134 L~aa~~~L~~lg~~~~~~~~~~~gYamaYp~Gil~ii~~ 172 (544)
T COG2985 134 LGAAQDILRELGAPSQALDQMGMGYALAYPIGILGIILG 172 (544)
T ss_pred hHHHHHHHHhhccchhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 4 4567777753221222 22333444455555544
No 105
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=86.69 E-value=5.2 Score=40.57 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHH
Q 044119 381 LQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLT 429 (816)
Q Consensus 381 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~ 429 (816)
.+.+-+..+++-++++++.+++.+++++|++.+|..++.-..-...+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 5566667778999999999999999999999999887776666655554
No 106
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=86.58 E-value=8 Score=39.04 Aligned_cols=106 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhcc---CCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHH-------HHHHHh
Q 044119 81 SLFSLISQLLHLALKRL---KQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGI-------YFIFIV 150 (816)
Q Consensus 81 ~lil~~~~l~~~ll~rl---~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~-------~llF~~ 150 (816)
.++=+.-++.+++.||+ |++.----|+.|+++.-.. |....= .+....+..++.+|++ |-.-..
T Consensus 19 a~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG-----~kGlaDi~lfsGiglmGGaMlRDfAIvaT 92 (254)
T TIGR00808 19 AVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGG-----EKGLADIAIFGGFGLMGGAMLRDLAIVAT 92 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCC-----ccccchhhhhcchhhhhhHHHHHHHHHHH
Confidence 33333334445555554 6666666788888875321 111100 0112223333333332 112234
Q ss_pred hhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 044119 151 TLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYI 192 (816)
Q Consensus 151 Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~ 192 (816)
..|.|.+++||.+..-..--+.+.++||++|..+++.+++..
T Consensus 93 Af~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 93 AFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred hhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 679999999999998888888999999999999999997654
No 107
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=86.11 E-value=70 Score=36.70 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH
Q 044119 212 FFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNL 249 (816)
Q Consensus 212 s~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll 249 (816)
-+|++....+.+|+.+.+.--.+++++.+.|..+..+-
T Consensus 116 lTPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~Lp 153 (423)
T PF02040_consen 116 LTPIVLALARRLGLNPKPPLPFLFACAFIANTASLLLP 153 (423)
T ss_pred hHHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhcccc
Confidence 36888888899997665555788999999999998766
No 108
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=85.93 E-value=55 Score=35.35 Aligned_cols=275 Identities=13% Similarity=0.081 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCc
Q 044119 133 LLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPF 212 (816)
Q Consensus 133 ~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts 212 (816)
+..+++-+--+-...|+.=++.|.+.+.|.++|-+.+-+. ..+..++|+.+++.+.++... + .+-..-+++-|-|.
T Consensus 56 ~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli-~sv~~vlGfIl~yp~~ksf~g-d--~Wka~gmi~gSytG 131 (384)
T COG5505 56 PVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLI-SSVGTVLGFILAYPLLKSFIG-D--LWKAGGMISGSYTG 131 (384)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHHHHhhhcc-h--HHhhhhheeeeeeC
Confidence 3444444433333445555789999999999998765444 344556777777776554431 1 11111111222222
Q ss_pred HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHH-H---hh----cc---c-hHHHHHHHHHHHHHHHHHHHHH
Q 044119 213 FPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILA-M---IF----KA---N-NHLLKTEITFCALAFFMFFIVR 280 (816)
Q Consensus 213 ~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll~~~-~---~~----~~---~-~~~l~~~l~~v~~~~~~~~v~r 280 (816)
=.+-...+ .+.+..+ .-..+++..-|.++.-+.+.. + .+ +. . ..-+....... ..
T Consensus 132 GSaNmAAm--qaaLeVP--~~~fsatlaaDtv~ySll~~lli~iVpy~~kw~~~tkpdesKL~A~~~e~---------a~ 198 (384)
T COG5505 132 GSANMAAM--QAALEVP--GEYFSATLAADTVMYSLLFFLLISIVPYKWKWRHYTKPDESKLKADGNEG---------AS 198 (384)
T ss_pred CcchHHHH--HhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHhhhhhhh---------hh
Confidence 11111111 1223333 445677777777665444111 0 00 00 0 00000000000 00
Q ss_pred HHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHH---------------HHHHHHhhhccCCCCchhHHHH
Q 044119 281 PAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFM---------------SGAVLTGLVVPAGPPLGSAVVK 345 (816)
Q Consensus 281 ~~~~~l~~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~i---------------lGaflaGL~i~~~~~~~~~l~~ 345 (816)
.. -..+ +|+.+-....+.+...+....++..+|-+-. +=.-+.|+++.-. |+.+ ..
T Consensus 199 ~e--~ywK----rkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl~~~~gt~t~v~vsi~gLi~aLt-Pf~~--lp 269 (384)
T COG5505 199 AE--SYWK----RKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGLLTGLGTQTLVLVSITGLIIALT-PFER--LP 269 (384)
T ss_pred hh--hhhh----cCCccHHHHHHHhhHHHHHHHHHHHHHhhccccccccccccceeeehHHHHHHHHHHhC-cccc--CC
Confidence 00 0001 1123333444555544444444444433221 1122345544444 3221 01
Q ss_pred HhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHH
Q 044119 346 KSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIEL 425 (816)
Q Consensus 346 kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l 425 (816)
-.+++ ..+++=.|+..++...|+..+...+. .++..+...+...+..+..++.++.+..+-..-.+. |..|-.+.
T Consensus 270 gs~el-gtv~lY~~v~vias~Ad~~~i~taP~---~i~~gf~il~~h~~v~f~~~KlF~~dL~~i~~AslA-niGG~~sA 344 (384)
T COG5505 270 GSQEL-GTVLLYLFVVVIASPADLRLIVTAPL---IILFGFIILISHLAVSFAAGKLFRVDLEEILLASLA-NIGGPTSA 344 (384)
T ss_pred chhhh-hHHHHHHHHHHhccchhHHHHHhhhH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-ccCCccch
Confidence 12333 45677778999999999988722222 223333344557777778888888877665554443 77888888
Q ss_pred HHHHHhhhccccC
Q 044119 426 LLLTEWRTHKYVD 438 (816)
Q Consensus 426 ~~~~~~~~~~~i~ 438 (816)
-....+++...+.
T Consensus 345 p~~A~A~nr~lv~ 357 (384)
T COG5505 345 PAMAIAKNRELVA 357 (384)
T ss_pred hHHHhhcCchhcc
Confidence 7777777654443
No 109
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=85.92 E-value=18 Score=39.81 Aligned_cols=135 Identities=18% Similarity=0.141 Sum_probs=78.1
Q ss_pred hccCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHH
Q 044119 95 KRLKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCL 174 (816)
Q Consensus 95 ~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~ 174 (816)
|-++-|.+++. ++|+++...... +|.--.+.++.+++...-+-||..|+.++.+.+++.++..+.....-.
T Consensus 178 ~~~~nP~iia~-i~Gl~~~~~~i~--------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 178 KLIKFPPLWAP-LLSVILSLVGFK--------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHHhCCChHHH-HHHHHHHHHhhc--------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence 33578888875 455776643222 122347889999999999999999999999888777676665555555
Q ss_pred -HHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH
Q 044119 175 -VVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNL 249 (816)
Q Consensus 175 -l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll 249 (816)
+.|.+. ++++..++.. ....-..+..+...+++...++.+.--.+. +.+.+...++-+++++.+
T Consensus 249 il~P~i~-~~~~~~~~l~-------~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tl 313 (321)
T TIGR00946 249 LVQPAVM-AGISKLIGLR-------GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISL 313 (321)
T ss_pred HHHHHHH-HHHHHHhCCC-------hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHH
Confidence 445444 4444443221 223334445555555555555544321222 444444444444444443
No 110
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=85.63 E-value=5.8 Score=45.58 Aligned_cols=122 Identities=17% Similarity=0.243 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccC-C-CCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHH
Q 044119 302 VAMLLLPGITGALSDATGLNFMSGAVLTGLVVPA-G-PPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFA 379 (816)
Q Consensus 302 ~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~-~-~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~ 379 (816)
.+++.+...++.+++.+..+.+.-..+.|+.... . ........-.-|.+ ..+++|+.....|+++|...+ .+.|.
T Consensus 12 ~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~-~~l~l~ilLf~~g~~l~~~~l--~~~~~ 88 (429)
T COG0025 12 LLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELF-LVLFLAILLFAGGLELDLREL--RRVWR 88 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHH-HHHHHHHHHHHhHhcCCHHHH--HHhHH
Confidence 3444445555555555555544444444444431 1 11111111112222 367778888888999999988 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHhHHHHHHHH
Q 044119 380 ILQIIILAAYFARVAAIFLSLIFY--KISIRNAILFGLILNIKGVIELL 426 (816)
Q Consensus 380 ~~~~ii~~~~~~K~~~~~l~~~~~--~~~~~e~l~lgl~m~~kG~v~l~ 426 (816)
....+.....+...++..+..++. ++|+..++.+|.++++..-+.+.
T Consensus 89 ~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~ 137 (429)
T COG0025 89 SILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS 137 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence 444444444444555555555554 88999999999988876655543
No 111
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=85.18 E-value=1.8 Score=49.50 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=77.8
Q ss_pred hHHHHHHHHhcCCCEEEEc---CCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEEecCCCCC-C---CC--CCCcceEEE
Q 044119 589 HESICKLAEDKFAPLILIP---FHKGLEFQEIETC-LHQLNLNIQAYAQCTIGILVDSGLPR-S---LS--STHFSYDVA 658 (816)
Q Consensus 589 ~~~I~~~A~e~~~~liilp---~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIlVdrg~~~-~---~~--~~~~~~~i~ 658 (816)
.++||.+|+|+++|+|++| ||.+..+..+-.. ++.+-+.-+..-||..-+|-|.+..- . .. -.+...+|.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIs 120 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNIS 120 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCccee
Confidence 6899999999999999999 8887643222233 67777788889999999998886431 1 10 112235889
Q ss_pred EeccC--CcchHH-------HHH------HHHHHhcCCC-eEEEEEEEEeC-CCCCc--hhhhhhhHHHHHHHHHH
Q 044119 659 VFFLG--GADDRE-------VMA------LVSRMAGHPS-LTVTVFKIDFK-GNQAE--NECERQLDEYVMNEFRE 715 (816)
Q Consensus 659 v~f~G--G~ddre-------AL~------~a~rma~~~~-v~ltvvr~~~~-~~~~~--~~~~~~~d~~~l~~~~~ 715 (816)
+|.++ |.||.. ||- ++.-.-+.+. -++.|.=++.. +++.- -......|+++..-|+.
T Consensus 121 IPVFsIHGNHDDpSG~~~lsalDIL~~~GLVNyFGk~~~id~I~vsPiLlqKG~tklALYGLg~irDeRL~R~Fk~ 196 (646)
T KOG2310|consen 121 IPVFSIHGNHDDPSGDGRLSALDILSAAGLVNYFGKVSEIDKIDVSPILLQKGSTKLALYGLGSIRDERLYRMFKN 196 (646)
T ss_pred eeeEEeecCCCCCccccccchHHHHHhcchhhhhccccCcceEEEEeeeeccCceeEEEeeccccchHHHHHHHHh
Confidence 99887 777664 333 3333344443 34455444432 11100 01223567777777765
No 112
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=84.53 E-value=15 Score=41.06 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhh
Q 044119 75 VFLLQISLFSLISQLLHLALKR--LKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTL 152 (816)
Q Consensus 75 ~~llqi~lil~~~~l~~~ll~r--l~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gl 152 (816)
.-+.-+++-+.++..+..+++. +.+|..++.+.+|+++.... +.... +.-..+..+.++++++-+++=.+=+
T Consensus 222 ~~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~----~~~~~--~~v~~~~v~~ig~vsL~lflamALm 295 (404)
T COG0786 222 ETLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL----DLLKK--YRVFRRAVDVIGNVSLSLFLAMALM 295 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH----HHhcc--ccccHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444445555555555553 56999999999999997532 11111 0012578899999999998877766
Q ss_pred ccChhHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHhhhC
Q 044119 153 KMDKARILKTVRNGWSVSVTCLVVPFTISSFL-TSLLHSYI 192 (816)
Q Consensus 153 e~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~-~~~l~~~~ 192 (816)
.+.+-++-+.+-..+.+-..+.++..+..+.+ ...++..+
T Consensus 296 SlkLweL~~l~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~Y 336 (404)
T COG0786 296 SLKLWELADLALPLLVILAVQTIVMALFAIFVTFRLMGKNY 336 (404)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 78777777766666666555555554443333 33344433
No 113
>PRK10711 hypothetical protein; Provisional
Probab=83.77 E-value=50 Score=34.51 Aligned_cols=110 Identities=6% Similarity=0.018 Sum_probs=67.0
Q ss_pred hHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHH
Q 044119 341 SAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIK 420 (816)
Q Consensus 341 ~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~k 420 (816)
+.+..-+.+-+-.+-+|+| =+...+ .+.|....+-+.++.+.-++++++.++.+|.+.. +. ..|.+|
T Consensus 60 ~~l~~lLgPAtVALAvPLY-------~q~~~l--k~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~~--~Sl~pk 126 (231)
T PRK10711 60 EVLNDLLQPAVVALAFPLY-------EQLHQI--RARWKSIISICFIGSVVAMVTGTAVALWMGATPE--IA--ASILPK 126 (231)
T ss_pred HHHHhhhhHHHHHHHHHHH-------HhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHHhhh
Confidence 3444445555556666665 122333 2345555555666667778888888898887544 33 345799
Q ss_pred HHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhh
Q 044119 421 GVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMY 463 (816)
Q Consensus 421 G~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~l 463 (816)
....-+...+..+.|-+..-+-..++++-++-..+.+++++++
T Consensus 127 SVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 127 SVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9988888888888876654444555555666344444555554
No 114
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=83.40 E-value=0.42 Score=53.71 Aligned_cols=112 Identities=21% Similarity=0.339 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCch--hHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHH
Q 044119 306 LLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLG--SAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQI 383 (816)
Q Consensus 306 ~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~--~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ 383 (816)
+.+++...+.+.++++.++|-.++|+++.... +. +.-.+..+.+ ..+.+++.....|.++|...+. ..+.....
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~--~~~~~~~~ 81 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELR--RNWRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccc--cccccccc
Confidence 33444455788999999999999999998872 22 1112444555 6778888888999999999982 23333333
Q ss_pred HHHHHHHHHHHH-HHHHHH---HhCCChHHHHHHHHHHhHHH
Q 044119 384 IILAAYFARVAA-IFLSLI---FYKISIRNAILFGLILNIKG 421 (816)
Q Consensus 384 ii~~~~~~K~~~-~~l~~~---~~~~~~~e~l~lgl~m~~kG 421 (816)
..+..++.-++. ++.... ..+.++.+++.+|..+++-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp --------------------------------TTHHHHTT--
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 333334444444 444443 47889999999999887554
No 115
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=83.22 E-value=39 Score=38.45 Aligned_cols=163 Identities=9% Similarity=0.039 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHhc--cCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccC
Q 044119 78 LQISLFSLISQLLHLALKR--LKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMD 155 (816)
Q Consensus 78 lqi~lil~~~~l~~~ll~r--l~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d 155 (816)
..+.+.+.++..+...++. +.+|..+.-+++|+++.+.. ... .. .. -..+..+.++++++-+++..+=..++
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~~~---~~-~~-~~~~~i~~I~~~sLdlfl~~AlmsL~ 295 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-SFK---KF-PW-VAERAVSVIGNVSLSLFLAIALMSLQ 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-HHh---Cc-cc-cchHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4455566666677776664 78999999999999998632 111 10 00 12458999999999999988878999
Q ss_pred hhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HhhhCCCCCc-hHHHHHHHHHhccCcHHHH--HHHHHhccccCChhH
Q 044119 156 KARILKTVRNGWSVSVTCLVVPFTISSFLTSL-LHSYIPGVNK-GPFLYFFSVTLAKPFFPVI--AHAMNELNLLTSELG 231 (816)
Q Consensus 156 ~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~-l~~~~~~~~~-~~~~l~lg~~ls~Ts~~vv--~~iL~el~ll~s~~g 231 (816)
+..+....-..+.+.+.+.++..+....+.+- +++.+. . ...+-..|..+..|..++. -.+-+++|-.+...=
T Consensus 296 L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd---aaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ 372 (398)
T TIGR00210 296 LWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD---AAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFI 372 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH---HHHHhcccccccccchHHHHHHHHHHHhccCCCCccee
Confidence 99999999999999999988888665544443 333221 1 0112345555655554443 223344454333333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044119 232 QLAISCSILSELLSWMNL 249 (816)
Q Consensus 232 ~l~ls~a~i~Di~~~vll 249 (816)
-+=+-.+.+-|++...++
T Consensus 373 ivPlvgaf~id~~n~~~i 390 (398)
T TIGR00210 373 VVPLVGAFFIDIINALVI 390 (398)
T ss_pred hhhhHHHHHHHHhhHHHH
Confidence 333456677777666555
No 116
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=82.53 E-value=10 Score=42.67 Aligned_cols=135 Identities=11% Similarity=0.117 Sum_probs=71.9
Q ss_pred HHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcc-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 323 MSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQL-FNVYSITNWKAFAILQIIILAAYFARVAAIFLSLI 401 (816)
Q Consensus 323 ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~-idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 401 (816)
++...++|....+.+-+..+-.+.+..++..+++|.+....=.+ .+...+ ..++.+.+..++..+.=++.+++..+
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDL---LSLWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666655556777788899999999999985554444 333333 23333433333444444566666677
Q ss_pred HhCCChHHHHH--HHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhcC
Q 044119 402 FYKISIRNAIL--FGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYD 465 (816)
Q Consensus 402 ~~~~~~~e~l~--lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly~ 465 (816)
+++.+.+++-. ++...+.-|.+.+-+....+.. +.....++..++..++.-++...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 77776665432 3333344555555555433332 33333333333434444444444443
No 117
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=82.08 E-value=57 Score=33.89 Aligned_cols=129 Identities=18% Similarity=0.141 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHhccC----CChhHHHHHHHHhhccccccc-cccccccCCcchHHHHHHHHHHHHHHHHHHhhh
Q 044119 78 LQISLFSLISQLLHLALKRLK----QPKVVCNVLAGIILGPSVLGH-FERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTL 152 (816)
Q Consensus 78 lqi~lil~~~~l~~~ll~rl~----~P~iv~~IlaGIilGP~~lg~-~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gl 152 (816)
+-+.+-++.-.+.-++.||.| .|-+++.++...++-. +|. .+++. ++.++++.+- |-.-..|-.-+
T Consensus 9 f~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i~Y~~Y~-----~g~~~i~~lL--gPAtVAlAvPL 79 (230)
T COG1346 9 FGLLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGISYEDYM-----KGGQWINFLL--GPATVALAVPL 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCCCHHHHh-----cccHHHHHHH--HHHHHHHhhHH
Confidence 334444444445566677776 4555555544444321 121 11111 2345555552 22334444555
Q ss_pred ccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHH-hccCcHHHHHHHHHhcc
Q 044119 153 KMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVT-LAKPFFPVIAHAMNELN 224 (816)
Q Consensus 153 e~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~-ls~Ts~~vv~~iL~el~ 224 (816)
-=+++.+||+|+..+.-.+.|.++.++.+..++.+++... .+..... =|+| .|+.+.+-+++|
T Consensus 80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~--------~~~~Sl~PkSvT-TpiAm~vs~~iG 143 (230)
T COG1346 80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSP--------ELILSLLPKSVT-TPIAMEVSESIG 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--------HHHHHhcccccc-cHHHHHHHHhcC
Confidence 5678899999999988888888888888888887776432 1222222 2333 356666666655
No 118
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=81.95 E-value=6.1 Score=47.86 Aligned_cols=121 Identities=13% Similarity=0.072 Sum_probs=82.3
Q ss_pred CCCcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhc-ccc
Q 044119 490 DSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTN-QTK 568 (816)
Q Consensus 490 ~~e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~-~~~ 568 (816)
...-|||||+.....-..+++-+.-++..-. ...+++|+..-..+.. . ....+++-..++- +..
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~--a~~~av~v~~~~~~~~-----~--------~~~~~~l~~~~~Lae~l 310 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLH--AKWTAVYVETPELHRL-----S--------EKEARRLHENLRLAEEL 310 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhC--CCeEEEEEeccccccc-----c--------HHHHHHHHHHHHHHHHh
Confidence 4567999999998888888888877765533 5677888753211111 1 1123444455555 333
Q ss_pred cCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCC-CcE
Q 044119 569 SSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQ-CTI 636 (816)
Q Consensus 569 ~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~Ap-CsV 636 (816)
. -+..+..+ .++.++|.+.|++.++.-|++|=+.+.+.. .. .+++.+++++++| -+|
T Consensus 311 G------ae~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~---~~~~~~l~~~L~~~~~~idv 369 (890)
T COG2205 311 G------AEIVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWR---RLFKGSLADRLAREAPGIDV 369 (890)
T ss_pred C------CeEEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHH---HHhcccHHHHHHhcCCCceE
Confidence 2 33346667 899999999999999999999976654321 12 4789999999988 344
No 119
>PRK03818 putative transporter; Validated
Probab=81.16 E-value=14 Score=43.80 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=70.0
Q ss_pred hHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHh---h-hhhhHHHHHHHHHHHH
Q 044119 102 VVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARIL---K-TVRNGWSVSVTCLVVP 177 (816)
Q Consensus 102 iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~---~-~~~~~~~ia~~~~l~p 177 (816)
.-|-+++|+++|- ++.......-.| ......+.++|+.+|+..+|+.--.+.+. + .+.+...+|..-.++|
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~ 477 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYWFMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVP 477 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCceeecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 4578999999984 232211111122 45677889999999999999988776543 3 4566677777777888
Q ss_pred HHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHHHHHH
Q 044119 178 FTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPVIAHA 219 (816)
Q Consensus 178 ~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~i 219 (816)
.+++..+++++.+. .....+|+ +=+.|++|.+...
T Consensus 478 ~~~~~~~~~~~~~~-------~~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 478 LLIVGILARMLAKM-------NYLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHcC-------CHHHHHHHHhccCCCcHHHHHH
Confidence 88888887655433 22344554 4566888877654
No 120
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=80.90 E-value=76 Score=33.11 Aligned_cols=109 Identities=10% Similarity=0.058 Sum_probs=64.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHH
Q 044119 342 AVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKG 421 (816)
Q Consensus 342 ~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG 421 (816)
-+..-+++-+-.+-+|+| =+...+ .+.|..+.+.+.++.+.-+.++++.++.+|.+ +.+.. .+.+|.
T Consensus 60 ~l~~lLgPAtVALAvPLY-------~~~~~l--k~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~--~~i~~--Sl~pkS 126 (226)
T TIGR00659 60 VINDLLGPAVVALAIPLY-------KQLPQI--KKYWKEIILNVAVGSVIAIISGTLLALLLGLG--PEIIA--SLLPKS 126 (226)
T ss_pred HHHHhhHHHHHHHHHHHH-------HhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC--HHHHH--HhhhHH
Confidence 334444444455566665 122333 23444444555555666777888888888886 33333 457999
Q ss_pred HHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhh
Q 044119 422 VIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMY 463 (816)
Q Consensus 422 ~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~l 463 (816)
...-+...+..+.|-...-.-..++++-++-..+.+++++++
T Consensus 127 vTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 127 VTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 988888888888776554444555556666444444555554
No 121
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=80.68 E-value=8.7 Score=41.22 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCC-c--hhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhh
Q 044119 301 MVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPP-L--GSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKA 377 (816)
Q Consensus 301 ~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~-~--~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~ 377 (816)
...-+.++|+.+.++..+.+++.+|-.++|.+.....| + .+.+...+..++ ..+....+|+++.+.++-..+.
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 44556778899999999999999999999999875422 3 345555555552 3344557899998877633334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhh-hccccCcc
Q 044119 378 FAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWR-THKYVDDQ 440 (816)
Q Consensus 378 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~-~~~~i~~~ 440 (816)
|..-..+ .-+..-..-.+..++..|.++...+.+|+.++.-.++-+ ..++ +++.++.+
T Consensus 87 iAipgAl--~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvl---lraLqEr~lidt~ 145 (408)
T COG4651 87 IAIPGAL--AQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVL---LRALEERQLIDTQ 145 (408)
T ss_pred HhcchHH--HHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHH---HHHHHHhcccccc
Confidence 3221111 111111222334456678888899999998877665443 2333 44555543
No 122
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=80.57 E-value=9.5 Score=40.57 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=51.1
Q ss_pred eccCCcchHHHHHHHHHHhcCC-CeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEE---eCChHH
Q 044119 660 FFLGGADDREVMALVSRMAGHP-SLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMM---VNDSTE 735 (816)
Q Consensus 660 ~f~GG~ddreAL~~a~rma~~~-~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~---v~~~~~ 735 (816)
++.=.|.|+-|++.|.||.++. +.++|++.+-++. .-+++.+++.... +.++....+-. -.|...
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~---------a~~~~~lr~aLAm--GaD~avli~d~~~~g~D~~~ 99 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKA---------LTNAKGRKDVLSR--GPDELIVVIDDQFEQALPQQ 99 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcc---------hhhHHHHHHHHHc--CCCEEEEEecCcccCcCHHH
Confidence 3334589999999999999875 4899999875431 1112334443332 34444433311 124444
Q ss_pred HHHHHHhhh--cCccEEEEcccC
Q 044119 736 LMSSIRLIE--NIYDLVIVGKQR 756 (816)
Q Consensus 736 ~~~~i~~~~--~~~DLviVGr~~ 756 (816)
|..+|.+.- .+||||+-|+..
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s 122 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGS 122 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcc
Confidence 444444431 359999999986
No 123
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=79.88 E-value=16 Score=39.78 Aligned_cols=108 Identities=19% Similarity=0.318 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHH
Q 044119 351 MENIFMPFFYIHIGQLFNVYSI-TNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLT 429 (816)
Q Consensus 351 ~~~~~~PlfF~~~G~~idl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~ 429 (816)
.++++=|+.|.-+|..+|++.+ .++.. .++-..+-++ +..+++.+...|++.+|+-.+|.+=+.-|-.++.+.+
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP~~----~llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANPKT----LLLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCHHH----HHHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 3688889999999999999887 33322 2222223333 3345666777799999999999987777777776655
Q ss_pred HhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhcC
Q 044119 430 EWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYD 465 (816)
Q Consensus 430 ~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly~ 465 (816)
.. .-+++.+-.-.+-..|.++ -.+.||++|.+-.
T Consensus 142 ~L-Ap~LlgpIaVaAYsYMaLv-PiiqPpimklLtt 175 (360)
T PF03977_consen 142 KL-APHLLGPIAVAAYSYMALV-PIIQPPIMKLLTT 175 (360)
T ss_pred hh-hHHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcC
Confidence 32 1222222222222334555 6778999998874
No 124
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=79.54 E-value=25 Score=38.88 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHH
Q 044119 350 IMENIFMPFFYIHIGQLFNVYSI-TNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLL 428 (816)
Q Consensus 350 ~~~~~~~PlfF~~~G~~idl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~ 428 (816)
+.++++=|+.|.-+|..+|++.+ .++..... .-..+-++-+ .+++.+...|++.+|+-.+|.+=+.-|-.++.+.
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll---~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASIT---VALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHH---HHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 44788889999999999999887 33332211 1123333333 3445566779999999999998777777777665
Q ss_pred HHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhcC
Q 044119 429 TEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYD 465 (816)
Q Consensus 429 ~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly~ 465 (816)
+.. .-+++.+-.-.+---|.++ -.+.||++|.+--
T Consensus 178 ~kL-Ap~Llg~IaVAAYsYMaLV-PiiqPpimklLtt 212 (399)
T TIGR03136 178 LIL-AKDLFVPISIIAYLYLSLT-YAGYPYLIKLLVP 212 (399)
T ss_pred Hhh-hhHhHHHHHHHHHHHHHHH-hcccchHHHhhcC
Confidence 532 2223333222223334555 6778999998873
No 125
>PRK12342 hypothetical protein; Provisional
Probab=79.00 E-value=6.8 Score=41.59 Aligned_cols=98 Identities=12% Similarity=0.069 Sum_probs=55.0
Q ss_pred EeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHH-HHHHHHHhcCCCCceEEEE-EEe--CChH
Q 044119 659 VFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEY-VMNEFRERNAGNACVVCRE-MMV--NDST 734 (816)
Q Consensus 659 v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~-~l~~~~~~~~~~~~v~y~e-~~v--~~~~ 734 (816)
+++.=.|.|+-|++-|.||.+ .+.++|++.+-++ ..++. .+++.... +.++..-.+ ... .|.-
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~----------~a~~~~l~r~alam--GaD~avli~d~~~~g~D~~ 95 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGS----------LLQNSKVRKDVLSR--GPHSLYLVQDAQLEHALPL 95 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCC----------hHhHHHHHHHHHHc--CCCEEEEEecCccCCCCHH
Confidence 344446899999999999994 5789999987543 11122 33433332 334443332 111 2332
Q ss_pred HHHHHHHhhh--cCccEEEEcccCCCC-----CcccccCCCc
Q 044119 735 ELMSSIRLIE--NIYDLVIVGKQRGIG-----SPFEQEMKPW 769 (816)
Q Consensus 735 ~~~~~i~~~~--~~~DLviVGr~~~~~-----s~~~~gl~~W 769 (816)
.|..+|...- .+||||+-|+..... .+++.++.+|
T Consensus 96 ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 96 DTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 2334433331 259999999986432 2444444444
No 126
>TIGR00930 2a30 K-Cl cotransporter.
Probab=77.83 E-value=2.1e+02 Score=36.52 Aligned_cols=134 Identities=8% Similarity=0.021 Sum_probs=82.2
Q ss_pred CCCCCCcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcc
Q 044119 487 TSMDSELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQ 566 (816)
Q Consensus 487 ~~~~~e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~ 566 (816)
+.++=..++|+.+.+|++-+.|++++..+.+.+. -..+.|+++-+.+.. ..+.+ ...+++.+-++.
T Consensus 570 h~knwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~g---l~i~~~v~~~~~~~~----~~~~~------~~~~~~~~~~~~- 635 (953)
T TIGR00930 570 HVKNWRPQCLVLTGPPVCRPALLDFASQFTKGKG---LMICGSVIQGPRLEC----VKEAQ------AAEAKIQTWLEK- 635 (953)
T ss_pred CccccCCeEEEEeCCCcCcHHHHHHHHHhccCCc---EEEEEEEecCchhhh----HHHHH------HHHHHHHHHHHH-
Confidence 3345567899999999999999999999985432 455668877432211 01100 011222222332
Q ss_pred cccCccccceeeeEEecCCCChhHHHHHHHHhc-----CCCEEEEcCCCCCCcch--hhhhhHHHHHHHhhcCCCcEEEE
Q 044119 567 TKSSCVSLTSQPFKIIAPYHTMHESICKLAEDK-----FAPLILIPFHKGLEFQE--IETCLHQLNLNIQAYAQCTIGIL 639 (816)
Q Consensus 567 ~~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~-----~~~liilp~h~~~~~~~--~~~~~~~~n~~vl~~ApCsVgIl 639 (816)
-. ++.|..+--.+++.+++.++.+-- +.+.++++|..+|+.++ ....|-++.++.++ +... +.
T Consensus 636 -----~~--~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~~~i~~a~~-~~~~--v~ 705 (953)
T TIGR00930 636 -----NK--VKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYIGIIHDAFD-AHLA--VV 705 (953)
T ss_pred -----hC--CCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHHHHHHHHHH-cCCc--EE
Confidence 11 444554444489999999999875 46999999999987431 22236666666553 3344 45
Q ss_pred ecCCC
Q 044119 640 VDSGL 644 (816)
Q Consensus 640 Vdrg~ 644 (816)
+-|+.
T Consensus 706 i~r~~ 710 (953)
T TIGR00930 706 VVRNS 710 (953)
T ss_pred EEccc
Confidence 55754
No 127
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=77.69 E-value=46 Score=36.63 Aligned_cols=101 Identities=13% Similarity=0.132 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCh--hHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhcc
Q 044119 77 LLQISLFSLISQLLHLALKRLKQPK--VVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKM 154 (816)
Q Consensus 77 llqi~lil~~~~l~~~ll~rl~~P~--iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~ 154 (816)
..++.+++.++.+.+++++++|+|. ++|-++++.++.-...... -+ +.. +..++.+++=-.+|.++
T Consensus 154 ~~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~-----~~----P~~---l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 154 WLWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSF-----SL----PPW---LVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCC-----CC----CHH---HHHHHHHHHHHHHHccc
Confidence 4456667777888999999999874 5666666666553211111 11 233 44445555556779999
Q ss_pred ChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044119 155 DKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHS 190 (816)
Q Consensus 155 d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~ 190 (816)
+...+++.. +.+..++...+.-++++.+.++.+..
T Consensus 222 ~~~~l~~~~-~~~~~~l~~~~~~l~~~~~~a~~l~~ 256 (318)
T PF05145_consen 222 TRETLRELR-RLLPPALLSTLLLLALCALFAWLLSR 256 (318)
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887654 44444555555555555555555543
No 128
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=77.54 E-value=23 Score=40.15 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=68.1
Q ss_pred HHHHHHhChhHHHHHHHHhhhccCCCCchhHH-HHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHH
Q 044119 312 GALSDATGLNFMSGAVLTGLVVPAGPPLGSAV-VKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYF 390 (816)
Q Consensus 312 ~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l-~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~ 390 (816)
+-++..+|+...+=-...|++....+-.+-+. ...+..++..+.+.+...-.|++++++.+ ....+....+..+..++
T Consensus 23 s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~-r~a~~palsLATlGVl~ 101 (574)
T COG3263 23 SLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSF-RVAAGPALSLATLGVLI 101 (574)
T ss_pred HHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHH-HHHhhhhHHHHHHHHHH
Confidence 33444555555555555566665542111111 12344455666666667778999998887 43445445555555566
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHhHHH
Q 044119 391 ARVAAIFLSLIFYKISIRNAILFGLILNIKG 421 (816)
Q Consensus 391 ~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG 421 (816)
.-.+....+.+.++.+|-|++.+|.+.+..-
T Consensus 102 Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 102 TSGLTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 6777777788889999999999998865543
No 129
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=76.53 E-value=99 Score=32.03 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=64.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHH
Q 044119 342 AVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKG 421 (816)
Q Consensus 342 ~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG 421 (816)
-+..-+++-+-.+-+|+|= +...+ .+.|...+..++++.+.-++++++.++.+|.+.. +.. .+.+|.
T Consensus 50 ~l~~lLgPatVALAvPLY~-------~~~~l--~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~~~--Sl~pkS 116 (215)
T PF04172_consen 50 ILSFLLGPATVALAVPLYR-------QRRLL--KKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--IIL--SLAPKS 116 (215)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HHH--HHHHHH
Confidence 3344444444455555551 12233 2355555555666666777788888888888553 333 357899
Q ss_pred HHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHh
Q 044119 422 VIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISM 462 (816)
Q Consensus 422 ~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ 462 (816)
...-+...+..+.|-...-.-..++++-++-..+.++++++
T Consensus 117 VTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~ 157 (215)
T PF04172_consen 117 VTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKL 157 (215)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhH
Confidence 98888888887777665444445555555544444455555
No 130
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=73.82 E-value=22 Score=35.51 Aligned_cols=57 Identities=14% Similarity=0.236 Sum_probs=40.0
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
+|++.|.||.|.--++.++.+.+++.+..+.++++...-. .+.+.+.+.++++.+.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~-----~~~~~~~~~~~~~~~~~ 57 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLR-----PESDEEAEFVQQFCKKL 57 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCC-----hhHHHHHHHHHHHHHHc
Confidence 5899999999999999999998877777888888643211 01122345566666654
No 131
>COG2431 Predicted membrane protein [Function unknown]
Probab=72.25 E-value=58 Score=34.72 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=49.2
Q ss_pred hhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccC---hhHHh-hhhhhHHHHHHHHHHH
Q 044119 101 KVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMD---KARIL-KTVRNGWSVSVTCLVV 176 (816)
Q Consensus 101 ~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d---~~~l~-~~~~~~~~ia~~~~l~ 176 (816)
++.+..+.|+++|-..-.+. ...+...+..+.+++|.+|.++. ...-+ ...|+.+..++...+-
T Consensus 108 k~~~~vl~g~~~G~l~~~~~------------~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ils 175 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFL------------NFPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLS 175 (297)
T ss_pred HHHHHHHHHHHHHHHhcccc------------cCchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHH
Confidence 56677888888874322111 12455778889999999999887 22111 1236677777776666
Q ss_pred HHHHHHHHHHHHh
Q 044119 177 PFTISSFLTSLLH 189 (816)
Q Consensus 177 p~~lg~~~~~~l~ 189 (816)
..+-|...++++.
T Consensus 176 sliGG~iaa~~l~ 188 (297)
T COG2431 176 SLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665554
No 132
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=72.20 E-value=15 Score=36.79 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=41.9
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
+|+|-+.||+|.--.|.+...+.++.+.+++++++-..-. .+...+.+.++++.+++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~-----~~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR-----EESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS-----CCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----cccchhHHHHHHHHHhc
Confidence 5899999999999999999999999889999999764311 12334456788887775
No 133
>COG0679 Predicted permeases [General function prediction only]
Probab=70.66 E-value=1.7e+02 Score=32.04 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=81.6
Q ss_pred hhHHHHHHHHhhhccCC-CCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 044119 320 LNFMSGAVLTGLVVPAG-PPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFL 398 (816)
Q Consensus 320 ~~~ilGaflaGL~i~~~-~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l 398 (816)
.+|.+=|+++|+++... -++...+.+-++.+ .+.-.|+-++..|+.++.... ..............-.+...+..++
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~-~~~~~~~~~~~~~~kll~~Pl~~~~ 244 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKL-KGSKPPIILIALSLKLLLAPLVALL 244 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhh-ccccchhHHHHHHHHHHHHHHHHHH
Confidence 45666666777776642 23344566666666 788999999999999998555 3223333333333346677788888
Q ss_pred HHHHhCCChHHHHHHHHH--HhHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhh
Q 044119 399 SLIFYKISIRNAILFGLI--LNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMY 463 (816)
Q Consensus 399 ~~~~~~~~~~e~l~lgl~--m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~l 463 (816)
..+.++++..+.. ...+ ..|.+....+++. +.+.-.+..-+.+.++.++ +.++-|.+-+.
T Consensus 245 ~~~~~~l~~~~~~-v~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist~l-s~~t~p~~~~~ 306 (311)
T COG0679 245 VAKLLGLSGLALQ-VLVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLSTLL-SLLTLPLLILL 306 (311)
T ss_pred HHHHcCCChHHHH-HHHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8888888776552 2222 2455555544443 3443334444555555555 56566555443
No 134
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=69.40 E-value=7.8 Score=42.63 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhHHHHH
Q 044119 350 IMENIFMPFFYIHIGQLFNVYSI-TNWKAFAILQIIILAAYFARVAAIFLSLIF-----YKISIRNAILFGLILNIKGVI 423 (816)
Q Consensus 350 ~~~~~~~PlfF~~~G~~idl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~~e~l~lgl~m~~kG~v 423 (816)
+.++++=|+.|.-+|..+|++.+ .++.... +-..+-++-+.....+..+ .|++.+|+-.+|.+=+.-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~l----lGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLL----LGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHH----HHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 34688889999999999999887 3443322 2222333333322222222 379999999999887777777
Q ss_pred HHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhcC
Q 044119 424 ELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYD 465 (816)
Q Consensus 424 ~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly~ 465 (816)
++.+.+.. .-+++.+-.-..--.|.++ -.+.||++|.+--
T Consensus 207 sIfvsskL-AP~Llg~IaVAAYSYMaLV-PiIQPpimklLTT 246 (433)
T PRK15475 207 AIYLSGKL-APELLGAIAVAAYSYMALV-PLIQPPIMKALTT 246 (433)
T ss_pred HHHhHhhh-hhHhHHHHHHHHHHHHHHH-hcccchHHHhccC
Confidence 77665432 1222222222222334555 6778999998774
No 135
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=69.10 E-value=7.9 Score=42.58 Aligned_cols=109 Identities=14% Similarity=0.197 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhHHHHHH
Q 044119 351 MENIFMPFFYIHIGQLFNVYSI-TNWKAFAILQIIILAAYFARVAAIFLSLIF-----YKISIRNAILFGLILNIKGVIE 424 (816)
Q Consensus 351 ~~~~~~PlfF~~~G~~idl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~~e~l~lgl~m~~kG~v~ 424 (816)
.++++=|+.|.-+|..+|++.+ .++..+. +-..+-++-+.....+..+ .|++.+|+-.+|.+=+.-|-.+
T Consensus 132 ~~gi~P~LIF~GIGAMtDFgpLlanP~~~l----lGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15477 132 GSGVAPLVIFMGVGAMTDFGPLLANPRTLL----LGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred hcchHHHHHHHhccHHhcchHHhhCHHHHH----HHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 4678889999999999999887 3443322 2222333333322222222 3899999999998877777777
Q ss_pred HHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhcC
Q 044119 425 LLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYD 465 (816)
Q Consensus 425 l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly~ 465 (816)
+.+.+.. .-+++.+-.-..--.|.++ -.+.||++|.+--
T Consensus 208 IfvsskL-AP~Llg~IaVAAYSYMaLV-PiIQPpimklLTT 246 (433)
T PRK15477 208 IYLSGKL-APELLGAIAVAAYSYMALV-PLIQPPIMKALTT 246 (433)
T ss_pred HHhHhhh-hhHhHHHHHHHHHHHHHHH-hcccchHHHhccC
Confidence 7665432 1222222222222334555 6778999998774
No 136
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=69.10 E-value=7.9 Score=42.58 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCChHHHHHHHHHHhHHHHH
Q 044119 350 IMENIFMPFFYIHIGQLFNVYSI-TNWKAFAILQIIILAAYFARVAAIFLSLIF-----YKISIRNAILFGLILNIKGVI 423 (816)
Q Consensus 350 ~~~~~~~PlfF~~~G~~idl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-----~~~~~~e~l~lgl~m~~kG~v 423 (816)
+.++++=|+.|.-+|..+|++.+ .++.... +-..+-++-+.....+..+ .|++.+|+-.+|.+=+.-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~l----lGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLL----LGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHH----HHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 34688889999999999999887 3443322 2222333333322222222 389999999999887777777
Q ss_pred HHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhcC
Q 044119 424 ELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYYD 465 (816)
Q Consensus 424 ~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly~ 465 (816)
++.+.+.. .-+++.+-.-..--.|.++ -.+.||++|.+--
T Consensus 207 sIfvsskL-AP~Llg~IaVAAYSYMaLV-PiIQPpimklLTT 246 (433)
T PRK15476 207 AIYLSGKL-APELLGAIAVAAYSYMALV-PLIQPPIMKALTT 246 (433)
T ss_pred HHHhHhhh-hhHhHHHHHHHHHHHHHHH-hcccchHHHhccC
Confidence 77665432 1222222222222334555 6778999998774
No 137
>COG2985 Predicted permease [General function prediction only]
Probab=68.98 E-value=23 Score=40.51 Aligned_cols=108 Identities=14% Similarity=0.109 Sum_probs=67.6
Q ss_pred CChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChh---HHhhhhhhHHHHHHHHHH
Q 044119 99 QPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKA---RILKTVRNGWSVSVTCLV 175 (816)
Q Consensus 99 ~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~---~l~~~~~~~~~ia~~~~l 175 (816)
+-..-|.+++|++||- +|.+..+....| ......+.++|+++||=-+|++---+ .+-..+-.....|..-.+
T Consensus 395 LG~aGGpLivaLiLG~--ig~iGpl~w~mP---~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~ 469 (544)
T COG2985 395 LGNAGGPLIVALILGF--IGAIGPLTWFMP---PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTL 469 (544)
T ss_pred ecccccHHHHHHHHHH--hcccCceEEEcC---hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHH
Confidence 3345677888888873 444443322223 46788899999987776666654333 233444455555666667
Q ss_pred HHHHHHHHHHHHHhhhCCCCCchHHHHHHHH-HhccCcHHHHHH
Q 044119 176 VPFTISSFLTSLLHSYIPGVNKGPFLYFFSV-TLAKPFFPVIAH 218 (816)
Q Consensus 176 ~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~Ts~~vv~~ 218 (816)
+|.+.+++++.++.+. .+....|+ +=+.|++|.+.-
T Consensus 470 vp~i~~~llg~~v~km-------n~~~l~G~laGs~T~ppaLa~ 506 (544)
T COG2985 470 VPVIIVFLLGRYVLKM-------NWLLLCGALAGSMTDPPALAF 506 (544)
T ss_pred HHHHHHHHHHHHHHhc-------cHHHHhhHHhcCCCChHHHHH
Confidence 8888888888877654 33445554 456688776544
No 138
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=68.17 E-value=69 Score=35.59 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHH-HHHHhhhc-cChhHHhhhh-hhHHHHHHHHH
Q 044119 98 KQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIY-FIFIVTLK-MDKARILKTV-RNGWSVSVTCL 174 (816)
Q Consensus 98 ~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~-llF~~Gle-~d~~~l~~~~-~~~~~ia~~~~ 174 (816)
++|..+-+++.|+++-- +|.+|+-. .+.......+-...+.. +++-.|+. +|++++.+.. .+.+.+.+.++
T Consensus 203 ~Ih~~v~mII~~vi~k~--~gllp~~i----~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~V 276 (347)
T TIGR00783 203 GIPAYAFMILIAAALKA--FGLVPKEI----EEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVV 276 (347)
T ss_pred cCCHHHHHHHHHHHHHH--hCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHH
Confidence 68999999999999863 55555310 01122223222222333 44446875 8999998877 55555555555
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 044119 175 VVPFTISSFLTSLLHSYI 192 (816)
Q Consensus 175 l~p~~lg~~~~~~l~~~~ 192 (816)
+.-.+.+++++.+++.+.
T Consensus 277 lg~ii~s~lvGKllG~YP 294 (347)
T TIGR00783 277 VAMILGGAFLGKLMGMYP 294 (347)
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 555566667777776543
No 139
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=65.90 E-value=22 Score=38.77 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=29.4
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEe
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDF 692 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 692 (816)
++++.|.||.|+--.|.++.+.-......+.++++-.
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDT 65 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDT 65 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeC
Confidence 6899999999999999999887554355677887643
No 140
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=64.77 E-value=49 Score=37.56 Aligned_cols=107 Identities=18% Similarity=0.213 Sum_probs=69.9
Q ss_pred hHHHHHHHhhcCC--CcEEEEecCCCCCCCCCCCcceEEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEEEeCCCC-
Q 044119 621 LHQLNLNIQAYAQ--CTIGILVDSGLPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMA-GHPSLTVTVFKIDFKGNQ- 696 (816)
Q Consensus 621 ~~~~n~~vl~~Ap--CsVgIlVdrg~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~~- 696 (816)
..+++++|+-.+| |.= |+-++ .-..+|||.|.||-|----..++.+.. .|+.+.|-=+.|-.++..
T Consensus 225 ~ds~k~rvl~i~~rl~~~-i~~~c---------~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~ 294 (520)
T KOG0573|consen 225 RDSLKDRVLVIPPRLCAN-ILLRC---------IHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSK 294 (520)
T ss_pred HHHHhhhhhccChhHhhh-ccccc---------cccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCccc
Confidence 5577888887776 332 22111 112489999999999999888998877 667777776766533222
Q ss_pred CchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCChHHHHHH
Q 044119 697 AENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSS 739 (816)
Q Consensus 697 ~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~ 739 (816)
+.+-.+|+..-.-++|++..+ .+....+.|+-|. .+|....
T Consensus 295 ~~~~PDRktgr~g~~eL~s~~-P~R~~nlV~vnV~-~~El~~~ 335 (520)
T KOG0573|consen 295 EQNVPDRKTGRRGLEELQSLY-PKRSWNLVEVNVT-YEELQKA 335 (520)
T ss_pred ccCCccHHHHHHHHHHHHHhC-CcceEEEEeccCC-HHHHHHH
Confidence 222367788788899998864 3456777787663 3444333
No 141
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=64.33 E-value=1.9e+02 Score=30.31 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044119 132 MLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHS 190 (816)
Q Consensus 132 ~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~ 190 (816)
.+++..+ +|-.-..|-.-+--+.+.+||+++..+.--+.|.++.++.+..++.+++.
T Consensus 64 ~~~l~~l--LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl 120 (232)
T PRK04288 64 GDIISFF--LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQL 120 (232)
T ss_pred hHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 4444444 22222333334445678889998888877777777777777777776653
No 142
>PF01889 DUF63: Membrane protein of unknown function DUF63; InterPro: IPR002749 These proteins of unknown function are found in archaebacteria and are probably transmembrane proteins.
Probab=64.19 E-value=2.1e+02 Score=30.78 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=26.5
Q ss_pred HHHHhccCcHHHHHHHHHh--ccccCChhHHHHHHHHHHHHHHHHHHH
Q 044119 204 FSVTLAKPFFPVIAHAMNE--LNLLTSELGQLAISCSILSELLSWMNL 249 (816)
Q Consensus 204 lg~~ls~Ts~~vv~~iL~e--l~ll~s~~g~l~ls~a~i~Di~~~vll 249 (816)
....++.....++.-+.+. .+....+.|.+++.+-++|-....+.+
T Consensus 148 ~v~~~a~~~t~~~~~~~~~~~~~~~~~~~~~~vv~aH~lDa~sT~vGi 195 (273)
T PF01889_consen 148 IVLGLATIATALVWLLLRRFKVNILTDPLGLLVVFAHLLDASSTFVGI 195 (273)
T ss_pred HHHHHHHHHHHHHHHHHhccchhhhccchhHHHHHHHHHhHHHHhhhe
Confidence 3333333333344444433 355567788888888888777665555
No 143
>PRK09903 putative transporter YfdV; Provisional
Probab=63.95 E-value=1.1e+02 Score=33.34 Aligned_cols=109 Identities=12% Similarity=0.031 Sum_probs=62.4
Q ss_pred cCCChhHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHH-HH
Q 044119 97 LKQPKVVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTC-LV 175 (816)
Q Consensus 97 l~~P~iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~-~l 175 (816)
++-|.+++.+ +|+++.- +|. + +|.--.+.++.+++...-+-||..|..+....++.. ++.+...+.- ++
T Consensus 171 ~~nP~iia~~-~gl~~~l--~~i-~-----lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~ 240 (314)
T PRK09903 171 AKEPVVWAPV-LATILVL--VGV-K-----IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLIL 240 (314)
T ss_pred HhchHHHHHH-HHHHHHH--cCC-C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHH
Confidence 5568887765 4555542 332 1 233347889999999999999999998877665443 3333333333 34
Q ss_pred HHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHHHHHHHhc
Q 044119 176 VPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVIAHAMNEL 223 (816)
Q Consensus 176 ~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv~~iL~el 223 (816)
.|++. .++.+.++ .+ ....-....++....++.+.++.+.
T Consensus 241 ~P~i~-~~~~~~~~--l~-----~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 241 MPLAL-LLVGMACH--LN-----SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHH-HHHHHHcC--CC-----cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 56644 33333222 11 2333455556666666666666553
No 144
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=63.93 E-value=21 Score=34.92 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=47.9
Q ss_pred cchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEE-eC--ChHHHHHHHH
Q 044119 665 ADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMM-VN--DSTELMSSIR 741 (816)
Q Consensus 665 ~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~-v~--~~~~~~~~i~ 741 (816)
+.|+|+|+.|+++++..+.+++++-+-+. .. .++.+++...++ +.++|...+-- .. +.+....++.
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~---------~~-~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~~a~~l~ 83 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPA---------EE-AAEALRKALAKY-GADKVYHIDDPALAEYDPEAYADALA 83 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETC---------CC-HHHHHHHHHHST-TESEEEEEE-GGGTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecc---------hh-hHHHHhhhhhhc-CCcEEEEecCccccccCHHHHHHHHH
Confidence 78999999999999998889998865320 11 122333333322 23455443322 11 2344555565
Q ss_pred hhh--cCccEEEEcccC
Q 044119 742 LIE--NIYDLVIVGKQR 756 (816)
Q Consensus 742 ~~~--~~~DLviVGr~~ 756 (816)
++. .++|++++|.+.
T Consensus 84 ~~~~~~~~~lVl~~~t~ 100 (164)
T PF01012_consen 84 ELIKEEGPDLVLFGSTS 100 (164)
T ss_dssp HHHHHHT-SEEEEESSH
T ss_pred HHHHhcCCCEEEEcCcC
Confidence 554 459999999875
No 145
>COG3329 Predicted permease [General function prediction only]
Probab=63.39 E-value=1.5e+02 Score=32.07 Aligned_cols=120 Identities=8% Similarity=0.016 Sum_probs=71.1
Q ss_pred hhHHHHHHHHhhhccCCC---CchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 044119 320 LNFMSGAVLTGLVVPAGP---PLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAI 396 (816)
Q Consensus 320 ~~~ilGaflaGL~i~~~~---~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~ 396 (816)
+++.+.-|+.|++++-.. .+-..+.+.+ +-.++--.-..-|+.+.-+.+ + ..+..++.-+.+.++.-++..
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~~i~~~l----slyLL~aIG~kGGveir~snl-~-a~v~~~~~~~aL~~li~~ia~ 89 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPEAIYQAL----SLYLLLAIGFKGGVEIRNSNL-T-AMVLPVALGVALGFLIVFIAY 89 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCchHHHHHH----HHHHHHHHhcccceeeecCCc-c-hhHHHHHHHHHHHHHHHHHHH
Confidence 467777788888777541 1112222211 111222222233444444444 2 233445555666667778888
Q ss_pred HHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHH
Q 044119 397 FLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTI 445 (816)
Q Consensus 397 ~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~l 445 (816)
++..++.+++..|+...+-.-+.-..+..+.+..-++..-+..+.|...
T Consensus 90 f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 90 FLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 8888888999999999887767777777777766666655666655443
No 146
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=62.57 E-value=1.3e+02 Score=29.08 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhhccccccccccccccCCcch-HHHHHHHHHHHHHHHHHHh
Q 044119 75 VFLLQISLFSLISQLLHLALKRLKQPK---VVCNVLAGIILGPSVLGHFERWNAIFHPEE-MLLVNTMSIMGGIYFIFIV 150 (816)
Q Consensus 75 ~~llqi~lil~~~~l~~~ll~rl~~P~---iv~~IlaGIilGP~~lg~~~~~~~lfp~~~-~~~l~~la~iGl~~llF~~ 150 (816)
.++.|+++++.+..+...+.+-+++|- ++|+++-=+.+ .++..+. ..- ...--.+.++++.|+=--+
T Consensus 8 ~~l~ql~ill~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L---~~~~vk~------~~v~~~a~~LL~~m~LfFVPagV 78 (141)
T PRK04125 8 SFLHQAFIFAAIMLISNIIASFLPIPMPASVIGLVLLFVLL---CTKVVKL------EQVESLGTALTNNIGFLFVPSGI 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcCH------HHHHHHHHHHHHHHHHHHhhhHh
Confidence 578899999999988888888888663 44443321111 1232221 000 1111233445544444446
Q ss_pred hhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044119 151 TLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSL 187 (816)
Q Consensus 151 Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~ 187 (816)
|+=..++.++.++...+..-+.+.++.++.+..+..+
T Consensus 79 Gim~~~~ll~~~~~~Il~~ivvSTllvl~vtg~v~~~ 115 (141)
T PRK04125 79 SVINSLGVMSQYPVQIIGVIIVATILLLACTGLFSQF 115 (141)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888888777766666666666555444443
No 147
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=62.44 E-value=31 Score=33.77 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=53.7
Q ss_pred HHHHHHHhhhccCCC---CchhHHHHHhHHHHHHHHHHHHHHHhhccccccccc--chhh-HHHHHHHHHHHHHHHHHHH
Q 044119 323 MSGAVLTGLVVPAGP---PLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSIT--NWKA-FAILQIIILAAYFARVAAI 396 (816)
Q Consensus 323 ilGaflaGL~i~~~~---~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~--~~~~-~~~~~~ii~~~~~~K~~~~ 396 (816)
.-|++++|+++.+.. |....+......+..++-+-+|...+|++.-...+. .... +....+..++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 457788888777653 333334444556668889999999999988754441 1112 2223333344444556667
Q ss_pred HHHHHHhCCChHH
Q 044119 397 FLSLIFYKISIRN 409 (816)
Q Consensus 397 ~l~~~~~~~~~~e 409 (816)
++..+++|+++..
T Consensus 104 ~~~~~~~~~~~~~ 116 (154)
T TIGR01625 104 VALIKLLRINYAL 116 (154)
T ss_pred HHHHHHhCCCHHH
Confidence 7777888998753
No 148
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=61.72 E-value=94 Score=38.22 Aligned_cols=123 Identities=15% Similarity=0.243 Sum_probs=75.6
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCch-hhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCC
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAEN-ECERQLDEYVMNEFRERNAGNACVVCREMMVND 732 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~ 732 (816)
..||+|-..|+|....-++.|.|||+.-+...|++++..++..... +..+.+++ .+ ++.+.... .+ +++.
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~~-~~-~Lae~lGa--e~----~~l~- 318 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLHE-NL-RLAEELGA--EI----VTLY- 318 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHHH-HH-HHHHHhCC--eE----EEEe-
Confidence 4689999999999999999999999999999999998765332221 12223322 11 23333221 11 1222
Q ss_pred hHHHHHHHHhhh--cCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 733 STELMSSIRLIE--NIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 733 ~~~~~~~i~~~~--~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
+.++...|.+.+ ....-+|+|+++.. -|-+.-. |.+.|.|+.. ..+-.|-+|-
T Consensus 319 ~~dv~~~i~~ya~~~~~TkiViG~~~~~---------rw~~~~~-~~l~~~L~~~---~~~idv~ii~ 373 (890)
T COG2205 319 GGDVAKAIARYAREHNATKIVIGRSRRS---------RWRRLFK-GSLADRLARE---APGIDVHIVA 373 (890)
T ss_pred CCcHHHHHHHHHHHcCCeeEEeCCCcch---------HHHHHhc-ccHHHHHHhc---CCCceEEEee
Confidence 233444444443 44678999999862 3533222 8889999864 2344555553
No 149
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=60.78 E-value=27 Score=37.93 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=36.7
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
+.++.|.||.|+--.|.++.+.-..-+..+.++++-..-. - .+ -.++.+++.+++
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~--F----~E-t~efrd~~a~~~ 75 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWK--F----RE-MIAFRDHMVAKY 75 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCC--C----HH-HHHHHHHHHHHh
Confidence 3567899999999999999888654356678888643211 0 11 225666666665
No 150
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=59.63 E-value=2.3e+02 Score=30.63 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 044119 352 ENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFAR 392 (816)
Q Consensus 352 ~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K 392 (816)
+.+-+|+.|..+.-+-.+..- +..+|.++.++.+.+...|
T Consensus 229 ~ylTlPvLf~MiSnHyp~~y~-~~~nWlil~li~~~g~~IR 268 (300)
T PF06181_consen 229 NYLTLPVLFLMISNHYPMTYG-HPYNWLILALIMLAGALIR 268 (300)
T ss_pred ceeHHHHHHHHHhccCccccc-cchhHHHHHHHHHHHHHHH
Confidence 456789999987665554433 5557765555555554444
No 151
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=59.54 E-value=1.7e+02 Score=30.40 Aligned_cols=40 Identities=15% Similarity=0.006 Sum_probs=28.9
Q ss_pred hhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044119 151 TLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHS 190 (816)
Q Consensus 151 Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~ 190 (816)
-+-=+.+.+||+++..+.--..+.++.++.+..++++++.
T Consensus 65 PLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl 104 (215)
T PF04172_consen 65 PLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGL 104 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3334577888888888877777777777777777776653
No 152
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=59.53 E-value=48 Score=32.81 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=40.3
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcC
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNA 718 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 718 (816)
+|++.+.||.|.--++.++.+...+.+..+.++++..... .....+.+.++++..++.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~-----~~~~~~~~~~~~~~~~~~ 58 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLR-----PESDEEAAFVADLCAKLG 58 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC-----chHHHHHHHHHHHHHHcC
Confidence 5889999999999999999888766567788888643211 011233456667766653
No 153
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=59.13 E-value=91 Score=37.23 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hCCChHHHHHHHHHHhHHHH
Q 044119 352 ENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIF---------YKISIRNAILFGLILNIKGV 422 (816)
Q Consensus 352 ~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~---------~~~~~~e~l~lgl~m~~kG~ 422 (816)
..+++|....-.|..++...+. .++..++.+.+++++.-.+.+....++ .+++|.+++.+|.++++..-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~--~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFF--ENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 5678888888899999998882 233333333322222222222111111 25699999999999988877
Q ss_pred HHHH
Q 044119 423 IELL 426 (816)
Q Consensus 423 v~l~ 426 (816)
+...
T Consensus 147 VAVl 150 (559)
T TIGR00840 147 VAVL 150 (559)
T ss_pred HHHH
Confidence 6655
No 154
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=57.77 E-value=39 Score=36.84 Aligned_cols=175 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhChhH-HHHHHHHhhhccCCCCchh------HHHH--HhHHHHHHHHHHHHHHHhhcccccccc-
Q 044119 303 AMLLLPGITGALSDATGLNF-MSGAVLTGLVVPAGPPLGS------AVVK--KSEIIMENIFMPFFYIHIGQLFNVYSI- 372 (816)
Q Consensus 303 ~vl~~~~~~~~lae~lG~~~-ilGaflaGL~i~~~~~~~~------~l~~--kle~~~~~~~~PlfF~~~G~~idl~~l- 372 (816)
+.+...+..-|++-.-+.++ .+=+.-+|.++.|-|.-+- .+.+ .-..+.++++=|+.|.-+|..+|++.+
T Consensus 4 vMi~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpll 83 (354)
T TIGR01109 4 IMLLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLL 83 (354)
T ss_pred ehHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHH
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHH
Q 044119 373 TNWKAFAILQIIILAAYFARVAAIFLSLIFYKI------SIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIM 446 (816)
Q Consensus 373 ~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lv 446 (816)
.++.........=+..++.-+.+.++ |+ +.+|+-.+|.+=+.-|-.++.+.+ -+.-+++.+-.-.+--
T Consensus 84 anP~~~llGaaAQ~GiF~t~~~A~~l-----Gf~~~~~~~~~eAAsIgIIGgADGPt~If~s~-~lap~Llg~IaVAAYs 157 (354)
T TIGR01109 84 ANPRTLLLGAAAQFGIFATVFGALTL-----NFFGIISFSLPQAAAIGIIGGADGPTAIYLSG-KLAPELLAAIAVAAYS 157 (354)
T ss_pred hChHHHHHHHHHHhhHHHHHHHHHHh-----CCCcccccChhhceeeeeeccCCCchhhhhHh-hhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHhHHHHhhcCCCccchhhhhhhhhcccccCCCCC
Q 044119 447 LSHTAVTAIVIPLISMYYDPNSTRLQSSCKLEKRTRTVGTTSM 489 (816)
Q Consensus 447 l~vll~t~i~~pli~~ly~p~~~~~~~~~~~~~~~rti~~~~~ 489 (816)
-|.++ -.+.||++|.+-.++.|+..-+ + .|.+.+.++
T Consensus 158 YMaLv-PiiqPpimklLttkkeR~I~M~----~-~r~Vsk~eK 194 (354)
T TIGR01109 158 YMALV-PIIQPPIMKALTSEKERKIRMK----Q-LRTVSKREK 194 (354)
T ss_pred HHHHH-hcccchHHHhhcChHHhccccC----C-CCCcCccch
No 155
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=57.76 E-value=3.2 Score=43.89 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHH
Q 044119 352 ENIFMPFFYIHIGQLFNVYSI-TNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTE 430 (816)
Q Consensus 352 ~~~~~PlfF~~~G~~idl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~ 430 (816)
++++=++.|.-+|..+|++.+ .++.+.... ..+-++- ..+++.+...|+..+|+-.+|.+=+.-|-.++.+.+
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanPktllLG----aAAQ~GI-F~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~- 156 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANPKTLLLG----AAAQFGI-FATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN- 156 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCcHHHHhh----hHHHhch-HHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc-
Confidence 677878889999999999887 444443322 1222222 334555667789999999998876666666655443
Q ss_pred hhhccccCcchhhH-----HHHHHHHHHHhHhHHHHhhcCCCc
Q 044119 431 WRTHKYVDDQTVTT-----IMLSHTAVTAIVIPLISMYYDPNS 468 (816)
Q Consensus 431 ~~~~~~i~~~~f~~-----lvl~vll~t~i~~pli~~ly~p~~ 468 (816)
.+.++.... --.|+++ -++-+|++|.+-.+++
T Consensus 157 -----~LAP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~E 193 (375)
T COG1883 157 -----KLAPELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEE 193 (375)
T ss_pred -----ccCHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHH
Confidence 233333222 2234555 6778999998876554
No 156
>COG0679 Predicted permeases [General function prediction only]
Probab=56.35 E-value=1.9e+02 Score=31.67 Aligned_cols=100 Identities=9% Similarity=0.163 Sum_probs=62.9
Q ss_pred HHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 322 FMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLI 401 (816)
Q Consensus 322 ~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 401 (816)
+++.-...|....+......+-.+-++.++..+.+|..+...=.+.+.+.. ..+.......+..++.=+...++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL---ADLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666776667777777899999999999998877666665543 23333444444455556666666677
Q ss_pred HhCCChHHHHH--HHHHHhHHHHHH
Q 044119 402 FYKISIRNAIL--FGLILNIKGVIE 424 (816)
Q Consensus 402 ~~~~~~~e~l~--lgl~m~~kG~v~ 424 (816)
+.+.+.+++.. ++...+.-|-+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg 112 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLG 112 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhh
Confidence 77777776633 333334444444
No 157
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=55.93 E-value=1.1e+02 Score=33.57 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 322 FMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSI-TNWKAFAILQIIILAAYFARVAAIFLSL 400 (816)
Q Consensus 322 ~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~ 400 (816)
.++.+.++|...|.-+..+..+. .|.. ..+.+.+.|...|++++...+ .....|...+......++.=.+.++...
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888887644333332 1233 344477778889999998887 2234554444444444444444455555
Q ss_pred HHhCCChHHHHHHHHH
Q 044119 401 IFYKISIRNAILFGLI 416 (816)
Q Consensus 401 ~~~~~~~~e~l~lgl~ 416 (816)
+..+-...+.+..|+.
T Consensus 83 ~l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 83 RLFPAFLPPELALGLL 98 (313)
T ss_pred HHhhccCCHHHHHHHH
Confidence 5443222344555554
No 158
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=54.61 E-value=68 Score=35.20 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=28.0
Q ss_pred HHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHhhhC
Q 044119 143 GIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFT---ISSFLTSLLHSYI 192 (816)
Q Consensus 143 l~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~---lg~~~~~~l~~~~ 192 (816)
+.+||...|++- .++++..++..+.+...+++.|.+ +|..++++++.+.
T Consensus 213 L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~ 264 (327)
T PF05982_consen 213 LCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINALIGIGLGWLLGLSP 264 (327)
T ss_pred HHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 556676777754 334444445555555666667765 5556666555443
No 159
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=54.28 E-value=49 Score=35.29 Aligned_cols=106 Identities=17% Similarity=0.112 Sum_probs=61.6
Q ss_pred CcchHHHHHHHHHHhc-CCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEE---EEeCChHHHHHH
Q 044119 664 GADDREVMALVSRMAG-HPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCRE---MMVNDSTELMSS 739 (816)
Q Consensus 664 G~ddreAL~~a~rma~-~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e---~~v~~~~~~~~~ 739 (816)
-|.|+-|++.|.||.+ ..+.++|++.+=++ +. ++.+.+... .+.++..-.+ ---.|...+..+
T Consensus 36 n~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~----------~a-~~~lr~aLA--mGaDraili~d~~~~~~d~~~ta~~ 102 (260)
T COG2086 36 NPFDLNAVEEALRLKEKGYGGEVTVLTMGPP----------QA-EEALREALA--MGADRAILITDRAFAGADPLATAKA 102 (260)
T ss_pred ChhhHHHHHHHHHhhccCCCceEEEEEecch----------hh-HHHHHHHHh--cCCCeEEEEecccccCccHHHHHHH
Confidence 4899999999999999 68999999987543 11 123333222 2344544333 112234455555
Q ss_pred HHhhh--cCccEEEEcccCCCC--CcccccCCCccCCCccchhhhhh
Q 044119 740 IRLIE--NIYDLVIVGKQRGIG--SPFEQEMKPWLEYAELGIIGDML 782 (816)
Q Consensus 740 i~~~~--~~~DLviVGr~~~~~--s~~~~gl~~W~e~~eLG~igd~L 782 (816)
|.+.. .++||++.|+..... ..+-..+.+|--.|..+.+-++-
T Consensus 103 Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 103 LAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred HHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 55542 458899999986422 12223334444555555555544
No 160
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=54.07 E-value=15 Score=31.47 Aligned_cols=47 Identities=13% Similarity=-0.005 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hH-HHHHHHhhcCCCcE
Q 044119 587 TMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LH-QLNLNIQAYAQCTI 636 (816)
Q Consensus 587 ~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~-~~n~~vl~~ApCsV 636 (816)
.+++.+.+.|++.+++.|+.|.|..... +.. .+ +....+.+.++|.|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~---~~~~~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVA---GRRLGASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhh---hhccCchhhhhhcccccCCce
Confidence 8899999999999999999999876532 233 34 56678888888885
No 161
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=53.19 E-value=31 Score=37.79 Aligned_cols=56 Identities=29% Similarity=0.375 Sum_probs=41.6
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCe-EEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSL-TVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v-~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
.+|||-|.||.|.-..|.++...++..+- .+.|+++.. |.+...--++++|.+..+
T Consensus 28 ~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~-------E~QYs~TidyV~em~~~~ 84 (407)
T COG3969 28 PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDW-------EAQYSCTIDYVQEMRESY 84 (407)
T ss_pred CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcc-------hhhhhhHHHHHHHHHhcc
Confidence 48999999999999999999888876555 688887543 233444446777777753
No 162
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=52.49 E-value=3.1e+02 Score=30.55 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHhChh--HHHH-HHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccc-h
Q 044119 300 YMVAMLLLPGITGALSDATGLN--FMSG-AVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITN-W 375 (816)
Q Consensus 300 ~~~~vl~~~~~~~~lae~lG~~--~ilG-aflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~-~ 375 (816)
+....+.+.+..+++.+.+|+. .++| ..++|++..-. ...-.+-..+. .+-.-+.-..+|.++..+.+.. .
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~-~~~l~~P~~l~----~~~q~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLR-GLTLPLPRGLF----KAGQVILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-cccccCChHHH----HHHHHHHHHHHhhhcCHHHHHHHH
Confidence 3455566666778888888875 4777 55666655432 11111112222 2223334456788887766632 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhcc
Q 044119 376 KAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHK 435 (816)
Q Consensus 376 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~ 435 (816)
..|....++.+..+..-++..++..|+.+.|..+++. ...|.|..++.... .|.|
T Consensus 85 ~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~~---gs~PGgas~m~~iA--~d~g 139 (352)
T COG3180 85 SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAFL---GSSPGGASAMVSIA--QDYG 139 (352)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhH---hcCCchHHHHHHHH--HHhC
Confidence 3566667777777778888888888888777666543 34677777766554 4444
No 163
>cd01118 ArsB_permease Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.
Probab=51.54 E-value=4.1e+02 Score=30.11 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=16.4
Q ss_pred HHHHHHhccCCChhHHHHHHHHhh
Q 044119 89 LLHLALKRLKQPKVVCNVLAGIIL 112 (816)
Q Consensus 89 l~~~ll~rl~~P~iv~~IlaGIil 112 (816)
+..++.++.++|.-+.-+++++++
T Consensus 10 i~l~~~~~~~i~~~~~al~~~~ll 33 (416)
T cd01118 10 LVLVIWRPFGLPEAVWAVLGAVIA 33 (416)
T ss_pred HHHHHHccCCCChHHHHHHHHHHH
Confidence 444666767788887777776665
No 164
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=49.88 E-value=1.8e+02 Score=27.98 Aligned_cols=44 Identities=16% Similarity=0.270 Sum_probs=19.1
Q ss_pred HHHHHHHHhhc--ccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 044119 355 FMPFFYIHIGQ--LFNVYSITNWKAFAILQIIILAAYFARVAAIFLS 399 (816)
Q Consensus 355 ~~PlfF~~~G~--~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 399 (816)
-+|+||+=.|. -...+.+ ....|.+++.+++..+++=.+.++..
T Consensus 68 ~m~LfFVPagVGim~~~~ll-~~~~~~Il~~ivvSTllvl~vtg~v~ 113 (141)
T PRK04125 68 NIGFLFVPSGISVINSLGVM-SQYPVQIIGVIIVATILLLACTGLFS 113 (141)
T ss_pred HHHHHHhhhHhHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777774444 3344555 33334333333333333333333333
No 165
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=48.83 E-value=4.3e+02 Score=29.61 Aligned_cols=256 Identities=11% Similarity=0.028 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhccccccccc-cc------cc-cCCcc------hHHHHHHHHHH
Q 044119 76 FLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLGHFE-RW------NA-IFHPE------EMLLVNTMSIM 141 (816)
Q Consensus 76 ~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg~~~-~~------~~-lfp~~------~~~~l~~la~i 141 (816)
-.-++..+++...+++.-.+|--=|.+.-.|=.|+++.+.-+...+ .. .. ...++ ....++.+-++
T Consensus 21 ~~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~ 100 (399)
T TIGR03136 21 AITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNF 100 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHH
Confidence 3445666666666677777777788888888888888754221000 00 00 00000 01344434444
Q ss_pred HHH------HHHHHhhhccChhHHhhhhhhHHHHHH-HH--HHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCc
Q 044119 142 GGI------YFIFIVTLKMDKARILKTVRNGWSVSV-TC--LVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPF 212 (816)
Q Consensus 142 Gl~------~llF~~Gle~d~~~l~~~~~~~~~ia~-~~--~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts 212 (816)
|+. ++.+-+|--+|+.-+..+.|..+..|. .. +.+++ ..+..++... .++..+|++=..=.
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~----~~A~~lGF~~------~eAAsIgIIGgADG 170 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATL----VIGYYCGLTP------GEAAAVGTIGGADG 170 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHH----HHHHHcCCCH------HHhhHHhhcccCCc
Confidence 432 233446888999999988888776332 22 22333 2233333222 44555554443322
Q ss_pred HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Q 044119 213 FPVIAHAMNELNLLTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWIIRTT-- 290 (816)
Q Consensus 213 ~~vv~~iL~el~ll~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~~r~-- 290 (816)
+..+.- ..++.+.-+|.++++ .-.+..++..+-+|+++++..+.
T Consensus 171 PTaIf~---s~kLAp~Llg~IaVA-------------------------------AYsYMaLVPiiqPpimklLttkkER 216 (399)
T TIGR03136 171 PMVLFA---SLILAKDLFVPISII-------------------------------AYLYLSLTYAGYPYLIKLLVPKKYR 216 (399)
T ss_pred cHHHHH---HHhhhhHhHHHHHHH-------------------------------HHHHHHHHhcccchHHHhhcCHHHH
Confidence 211111 112112222221111 11123334444566666653221
Q ss_pred ----C-CCCCchh-HHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhh
Q 044119 291 ----P-EGKAVKE-IYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIG 364 (816)
Q Consensus 291 ----~-~~~~~~e-~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G 364 (816)
. +.++++. --+.|-+....+++.+. =.-.+.+|.+.+|-.+.+.+ . +++.+..+.-...+.--+.-..+|
T Consensus 217 ~I~M~~~~r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifLGl~vG 292 (399)
T TIGR03136 217 GLEVEMEFPDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFLGLVLG 292 (399)
T ss_pred cccCccCCCCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 2223322 23445555444444442 23358999999999999873 3 555555554434444444556778
Q ss_pred cccccccccchhhHH
Q 044119 365 QLFNVYSITNWKAFA 379 (816)
Q Consensus 365 ~~idl~~l~~~~~~~ 379 (816)
...+-+.+-++++..
T Consensus 293 ~t~~A~~FL~~~tl~ 307 (399)
T TIGR03136 293 VLCEASTLLDPRVSI 307 (399)
T ss_pred hhccHHhhCChHHHH
Confidence 887766654555543
No 166
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=47.87 E-value=2.4e+02 Score=31.10 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhcccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH---hHHHHHHHHHH
Q 044119 353 NIFMPFFYIHIGQLFNVYSI-TNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLIL---NIKGVIELLLL 428 (816)
Q Consensus 353 ~~~~PlfF~~~G~~idl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m---~~kG~v~l~~~ 428 (816)
..++.+.|...|+++...++ .....|...++.++.-++.=.+.++..++.++ ..+.+..|+++ +|-|..+.+..
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l~~~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--LPPELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHhHHheeeCCCchhHHHHH
Confidence 55667777788999988776 23456666777777777777888888888877 44556667665 56677775555
Q ss_pred HHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhc
Q 044119 429 TEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYY 464 (816)
Q Consensus 429 ~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly 464 (816)
..+. |-..- .-....++.++ +..++|++-+++
T Consensus 119 ~lAk--GnVal-sV~~tsvStll-~~f~tPllv~l~ 150 (319)
T COG0385 119 YLAK--GNVAL-SVCSTSVSTLL-GPFLTPLLVGLL 150 (319)
T ss_pred HHhc--CcHHH-HHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4442 32211 11223344445 555667765544
No 167
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=46.67 E-value=1.8e+02 Score=31.81 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=18.8
Q ss_pred HHHHHHHhccCCChhHHHHHHHHhhc
Q 044119 88 QLLHLALKRLKQPKVVCNVLAGIILG 113 (816)
Q Consensus 88 ~l~~~ll~rl~~P~iv~~IlaGIilG 113 (816)
..-..+...+|+|+++.-+++|..++
T Consensus 32 ~~~~~ii~~~RlPR~l~a~l~G~~La 57 (311)
T PF01032_consen 32 SIAQFIIWDLRLPRILAAILVGAALA 57 (311)
T ss_dssp HHHHHHHCCTCHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHhHHHHH
Confidence 34445666778888888888888776
No 168
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=46.65 E-value=45 Score=36.51 Aligned_cols=36 Identities=11% Similarity=0.209 Sum_probs=28.9
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEE
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKID 691 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 691 (816)
++++.|.||+|+--.|.++.+........+.++++-
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VD 74 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVD 74 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeC
Confidence 578899999999999999998865445567788753
No 169
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=46.36 E-value=4.5e+02 Score=29.12 Aligned_cols=249 Identities=15% Similarity=0.132 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhcccccc-ccccccccCCcchHHHHHHHHHHHH------HHHHHHhh
Q 044119 79 QISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGPSVLG-HFERWNAIFHPEEMLLVNTMSIMGG------IYFIFIVT 151 (816)
Q Consensus 79 qi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP~~lg-~~~~~~~lfp~~~~~~l~~la~iGl------~~llF~~G 151 (816)
++..+.+-..+.+.-.+|---|.+.-.|=.|+++.+.-+. ..+.. .- ......+..+-+.|+ .++.+-+|
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~--~~-~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQP--VG-GGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccc--cc-cCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 4555666666777777887788888889999998753221 11100 00 001223333333332 23444568
Q ss_pred hccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhcc---CcHHHHHHHHHhccccCC
Q 044119 152 LKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAK---PFFPVIAHAMNELNLLTS 228 (816)
Q Consensus 152 le~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~---Ts~~vv~~iL~el~ll~s 228 (816)
--+|++-+..+.|..+ +|...=+-.| ..+..+..++... .++..+|++=.. |+.-+..+ +.+.
T Consensus 81 AmtDFgpllanP~~~l-lGaaAQ~Gif-~t~~~A~~lGf~~------~eAAsIgIIGgADGPtsIf~s~~------LAp~ 146 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLL-LGAAAQFGIF-ATFLGAILLGFTP------KEAASIGIIGGADGPTSIFVSSK------LAPH 146 (360)
T ss_pred HHHhhHHHHhCHHHHH-HHHHHHHhHH-HHHHHHHHhCCCH------HHhhHhhhcccCCCcHHHHHHHh------hhHH
Confidence 8999999998888744 3333222212 2223333343222 445555544433 33222222 1121
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--cCCCCCchhH-HH
Q 044119 229 ELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKWII----RT--TPEGKAVKEI-YM 301 (816)
Q Consensus 229 ~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~l~----~r--~~~~~~~~e~-~~ 301 (816)
-+|.++++ .-.+..++..+-+|+++-+. |+ .++.++++.. -+
T Consensus 147 LlgpIaVa-------------------------------AYsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~eki 195 (360)
T PF03977_consen 147 LLGPIAVA-------------------------------AYSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKI 195 (360)
T ss_pred HHHHHHHH-------------------------------HHHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHH
Confidence 12211110 01122333344455555442 22 1222333332 34
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhH
Q 044119 302 VAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAF 378 (816)
Q Consensus 302 ~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~ 378 (816)
.|-+....+++.+ .=.-.+.+|.+++|-.+.+.+ ..+++.+..+.-...+.--+.-..+|...+-+.+-++++.
T Consensus 196 iFpivv~~~~~ll--~P~a~pLig~Lm~Gnl~rEsg-v~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl 269 (360)
T PF03977_consen 196 IFPIVVTILVGLL--LPSAAPLIGMLMFGNLLRESG-VVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTL 269 (360)
T ss_pred HHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHH
Confidence 4555544444444 223458999999999999873 3334444433332333333445567777776655455444
No 170
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=45.55 E-value=24 Score=30.23 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=26.5
Q ss_pred EEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 044119 657 VAVFFLGGADDREVMALVSRMAGHPSLTVTVFKI 690 (816)
Q Consensus 657 i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~ 690 (816)
|++++.||+|+..++.++.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999986 33556666654
No 171
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=45.41 E-value=6.5e+02 Score=30.73 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=58.5
Q ss_pred CcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCc
Q 044119 492 ELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSC 571 (816)
Q Consensus 492 e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 571 (816)
.-+||.-|.||+..-+++++...+.+. .+|.+--|.+.+..+..+-..+. ..+.--.|.. .
T Consensus 560 RPQILLlV~nPrss~~Lirf~N~LKKg-----gLYilGHV~~gd~~~~~~d~l~~---------q~~~W~s~vd-----~ 620 (945)
T KOG1288|consen 560 RPQILLLVSNPRSSCNLIRFCNDLKKG-----GLYILGHVIVGDDFSASMDELQQ---------QQRAWLSFVD-----D 620 (945)
T ss_pred cceEEEEecCCcccchHHHHHHhhccc-----ceEEEEEEEeccccccccchhhH---------HHHHHHHHHH-----H
Confidence 346999999999999999999988543 68888888887754422111111 1111111111 1
Q ss_pred cccceeeeEEecCCCChhHHHHHHHHh-----cCCCEEEEcCCCC
Q 044119 572 VSLTSQPFKIIAPYHTMHESICKLAED-----KFAPLILIPFHKG 611 (816)
Q Consensus 572 v~~~v~~~~~vsp~~~m~~~I~~~A~e-----~~~~liilp~h~~ 611 (816)
.. ++.|+-+.--.++-++|-++.+- -+.+.+++||+..
T Consensus 621 ~~--iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~ 663 (945)
T KOG1288|consen 621 AG--IKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDL 663 (945)
T ss_pred hh--hhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecC
Confidence 11 33333333335666777666654 3467888888753
No 172
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=45.31 E-value=3.8e+02 Score=28.00 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=29.5
Q ss_pred HHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044119 148 FIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHS 190 (816)
Q Consensus 148 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~ 190 (816)
|-.=+--+.+.+||+++..+.-...|.++.+..+..+++.++.
T Consensus 72 LAvPLY~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~ 114 (226)
T TIGR00659 72 LAIPLYKQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGL 114 (226)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3334445678888888888777677777777777777766653
No 173
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=44.99 E-value=5e+02 Score=29.26 Aligned_cols=110 Identities=12% Similarity=-0.013 Sum_probs=57.2
Q ss_pred HHHHhccCCChhH-HHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhc-cChhHHhhhhhhHHH
Q 044119 91 HLALKRLKQPKVV-CNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLK-MDKARILKTVRNGWS 168 (816)
Q Consensus 91 ~~ll~rl~~P~iv-~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle-~d~~~l~~~~~~~~~ 168 (816)
+.+-+.+++|.-+ .+|+.-.++-- .+..|+-.+ .......+++++=-.-.+|+-+|+- +|++++-+...-...
T Consensus 281 ~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~i~---~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~v 355 (438)
T COG3493 281 GILGKFIGLPGPVAFMIILVAILKA--ANLVPKEIE---EGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNV 355 (438)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHHHH---HHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHH
Confidence 4444556689777 44444444331 233332000 0113445555555555578888986 899998876555544
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhhCCCCCchHHHHHHHHHhcc
Q 044119 169 VSVTCLVVPF-TISSFLTSLLHSYIPGVNKGPFLYFFSVTLAK 210 (816)
Q Consensus 169 ia~~~~l~p~-~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~ 210 (816)
+-..++.+.. ..+++.+++++.+. ...++.-|++++.
T Consensus 356 ii~~~vVl~~i~~~~f~grl~~~YP-----VEaAI~aglC~a~ 393 (438)
T COG3493 356 IIALSVVLGAILGGAFVGRLMGFYP-----VEAAITAGLCMAN 393 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-----hHHHHHHhHHhcC
Confidence 4444444444 44556666665433 1334444466554
No 174
>COG2035 Predicted membrane protein [Function unknown]
Probab=44.69 E-value=4.3e+02 Score=28.40 Aligned_cols=50 Identities=24% Similarity=0.343 Sum_probs=34.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhc--ccccccc
Q 044119 69 GANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILG--PSVLGHF 120 (816)
Q Consensus 69 l~~~l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilG--P~~lg~~ 120 (816)
+.+-.|+..=-+..++.++++..++++. -|..+--..+|.++| |+.++.+
T Consensus 55 ~~fLi~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~i 106 (276)
T COG2035 55 VLFLIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKEI 106 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566777888888888886 677777778999987 4444443
No 175
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=44.38 E-value=2.4e+02 Score=28.07 Aligned_cols=87 Identities=11% Similarity=0.170 Sum_probs=50.2
Q ss_pred hHHHHHHHHhhhccCCC---CchhHHHHHhHHHHHHHHHHHHHHHhhccccccccc--chhhHHHHHHHHHHHHHHHHHH
Q 044119 321 NFMSGAVLTGLVVPAGP---PLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSIT--NWKAFAILQIIILAAYFARVAA 395 (816)
Q Consensus 321 ~~ilGaflaGL~i~~~~---~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~--~~~~~~~~~~ii~~~~~~K~~~ 395 (816)
...-|+.+.|+++.+.. |.. +......+..++.+-+|...+|++.-...+. ....+...+.-+++ ++.-.+.
T Consensus 24 G~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i-~~~~~~~ 100 (169)
T PF06826_consen 24 GAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVII-TLVPLLI 100 (169)
T ss_pred cccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHH
Confidence 34446777777776652 111 3444555567888999999999988754441 22234333333333 3344445
Q ss_pred HHHHHH-HhCCChHHH
Q 044119 396 IFLSLI-FYKISIRNA 410 (816)
Q Consensus 396 ~~l~~~-~~~~~~~e~ 410 (816)
++..++ ++|+++-..
T Consensus 101 ~~~~~~~~~~l~~~~~ 116 (169)
T PF06826_consen 101 ALVIGRYLFKLNPGIA 116 (169)
T ss_pred HHHHHHHHcCCCHHHH
Confidence 555555 888886543
No 176
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=43.42 E-value=5.3e+02 Score=29.07 Aligned_cols=25 Identities=12% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHhccCCChhHHHHHHHHhhcccc
Q 044119 92 LALKRLKQPKVVCNVLAGIILGPSV 116 (816)
Q Consensus 92 ~ll~rl~~P~iv~~IlaGIilGP~~ 116 (816)
.+...+|+|+++.-+++|..++-++
T Consensus 89 ~iv~~iRlPRil~a~lvGa~LalsG 113 (366)
T PRK09535 89 TIVLQIRLPRILLAATVGFALAAAG 113 (366)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455679999999999999998443
No 177
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=43.06 E-value=4.8e+02 Score=28.46 Aligned_cols=134 Identities=11% Similarity=0.097 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhhccCCC-CchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 044119 321 NFMSGAVLTGLVVPAGP-PLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLS 399 (816)
Q Consensus 321 ~~ilGaflaGL~i~~~~-~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 399 (816)
++.+=|.++|+++.-.+ +.-..+.+-++.+ .....|+-...+|+.++...+ . ..+.......++-++.-.+.++..
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~-~-~~~~~~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKI-K-LGVRDAILALIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhh-c-cChHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665431 2345566667766 788999999999999987665 2 233334444455555556666666
Q ss_pred HHHhCCChHHH--HHHHHHHhHHHHHHHHHHHHhhhccccCcchhh-HHHHHHHHHHHhHhHHHHhh
Q 044119 400 LIFYKISIRNA--ILFGLILNIKGVIELLLLTEWRTHKYVDDQTVT-TIMLSHTAVTAIVIPLISMY 463 (816)
Q Consensus 400 ~~~~~~~~~e~--l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~-~lvl~vll~t~i~~pli~~l 463 (816)
...++.+.... ..+-.. .|-+....+ ++.+.|. +++.-+ .+.++.++ +.++-|++-++
T Consensus 259 ~~~~~l~~~~~~~~vl~aa-~P~a~~~~i---~A~~y~~-~~~~aa~~v~~sT~l-s~~tlp~~~~l 319 (321)
T TIGR00946 259 SKLIGLRGLELSVAILQAA-LPGGAVAAV---LATEYEV-DVELASTAVTLSTVL-SLISLPLFIIL 319 (321)
T ss_pred HHHhCCChHHHHHHHHHHc-CChhhHHHH---HHHHhCC-CHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 77777765432 222222 234443333 3334443 344444 44444444 77777776554
No 178
>PRK01658 holin-like protein; Validated
Probab=42.00 E-value=3e+02 Score=25.82 Aligned_cols=105 Identities=15% Similarity=0.121 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhhccccccccccccccCCcch-HHHHHHHHHHHHHHHHHHh
Q 044119 75 VFLLQISLFSLISQLLHLALKRLKQPK---VVCNVLAGIILGPSVLGHFERWNAIFHPEE-MLLVNTMSIMGGIYFIFIV 150 (816)
Q Consensus 75 ~~llqi~lil~~~~l~~~ll~rl~~P~---iv~~IlaGIilGP~~lg~~~~~~~lfp~~~-~~~l~~la~iGl~~llF~~ 150 (816)
.++.|+.+++.+..+...+.+-+++|- ++|+++-=+.+ .++..+. ..- ...--.++++++.|+=--+
T Consensus 5 ~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L---~~~~ik~------~~v~~~a~~Ll~~m~llFVPa~V 75 (122)
T PRK01658 5 KLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLL---SFKILKL------KWIELGAETLLAELPLFFIPSAV 75 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---HhCCcCH------HHHHHHHHHHHHHHHHHHHHhhh
Confidence 578899988888888888888777653 34443321111 1222221 000 1112233455554444456
Q ss_pred hhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 151 TLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLL 188 (816)
Q Consensus 151 Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l 188 (816)
|+=-..+.+++++.+.....+.+.++.++.+..+..++
T Consensus 76 Gi~~~~~ll~~~~~~il~~ivvsT~l~l~vtg~~~~~l 113 (122)
T PRK01658 76 GVMNYGDFLSSKGISLFLVVVISTFVVMIVTGYLTQLL 113 (122)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888877776766666666555444443
No 179
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=41.31 E-value=6.3e+02 Score=30.92 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=20.8
Q ss_pred HHhccCCChhHHHHHHHHhhcccc
Q 044119 93 ALKRLKQPKVVCNVLAGIILGPSV 116 (816)
Q Consensus 93 ll~rl~~P~iv~~IlaGIilGP~~ 116 (816)
+...+|+|+++.-+++|..++-++
T Consensus 392 i~~~~RlPR~l~a~l~G~~La~sG 415 (668)
T PRK10577 392 ALLPLRLPRLLAALLAGAMLAVAG 415 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999998544
No 180
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=40.45 E-value=3.6e+02 Score=30.45 Aligned_cols=96 Identities=11% Similarity=0.122 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHH-HHHHh--HHHH
Q 044119 347 SEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKIS-IRNAILF-GLILN--IKGV 422 (816)
Q Consensus 347 le~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~~e~l~l-gl~m~--~kG~ 422 (816)
+.+.++..++|+-..+.=++.|+..+.. .. ...+..++++.++-.+++.+....++.. -.|.+.+ |.+.+ .-|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~-~g-~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILR-LG-GRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHH-hh-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 4455577788888777778899988722 22 2355556666677777777777766644 2344432 33322 2455
Q ss_pred HHHHHHHHhhhccccCcchhhHHHH
Q 044119 423 IELLLLTEWRTHKYVDDQTVTTIML 447 (816)
Q Consensus 423 v~l~~~~~~~~~~~i~~~~f~~lvl 447 (816)
+-.+....+++ .+++.|+..+.
T Consensus 130 ~N~~Av~~al~---~~~~~~~a~~a 151 (378)
T PF05684_consen 130 VNFVAVAEALG---VSDSLFAAALA 151 (378)
T ss_pred hHHHHHHHHHC---CCHHHHHHHHH
Confidence 66555554443 24566655544
No 181
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=40.34 E-value=13 Score=25.52 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=15.6
Q ss_pred eeehhhhhhhHHHHHHhcc
Q 044119 5 VINRKKIEQKQDILKRKGK 23 (816)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (816)
+-||.||++|.|++...-|
T Consensus 5 ~sNr~Ki~e~t~iLN~eWk 23 (30)
T PF11616_consen 5 SSNRQKIQERTDILNEEWK 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 4599999999999976544
No 182
>PRK01821 hypothetical protein; Provisional
Probab=39.95 E-value=3.4e+02 Score=25.89 Aligned_cols=104 Identities=8% Similarity=-0.054 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhhccccccccccccccCCcch-HHHHHHHHHHHHHHHHHHh
Q 044119 75 VFLLQISLFSLISQLLHLALKRLKQPK---VVCNVLAGIILGPSVLGHFERWNAIFHPEE-MLLVNTMSIMGGIYFIFIV 150 (816)
Q Consensus 75 ~~llqi~lil~~~~l~~~ll~rl~~P~---iv~~IlaGIilGP~~lg~~~~~~~lfp~~~-~~~l~~la~iGl~~llF~~ 150 (816)
.++.|+++++.+..+...+.+-+++|- ++|+++-=+.+ .++..+. ..- ...--.+.++++.|+=--+
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L---~~~~vk~------~~v~~~a~~LL~~m~LfFVPa~V 80 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLL---ALQILPA------KWVKPGCSLLIRYMALLFVPIGV 80 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH---HhCCcCH------HHHHHHHHHHHHHHHHHHhhhHH
Confidence 567888888888888888888887653 34443221111 1233221 000 1111223444444444446
Q ss_pred hhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 044119 151 TLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSL 187 (816)
Q Consensus 151 Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~ 187 (816)
|+=...+.++.++.+....-+.+.++.++.+..+..+
T Consensus 81 Gim~~~~ll~~~~~~il~~ivvST~lvl~vtg~~~~~ 117 (133)
T PRK01821 81 GVMQYYDLLRAQFGPIVVSCIVSTLVVLLVVGWSSHY 117 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766777788887777666666666655554444333
No 183
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=39.11 E-value=42 Score=38.30 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=24.0
Q ss_pred hHHHHHHHHhhh--cCccEEEEcccCCCCCcccccCCC-ccCCC
Q 044119 733 STELMSSIRLIE--NIYDLVIVGKQRGIGSPFEQEMKP-WLEYA 773 (816)
Q Consensus 733 ~~~~~~~i~~~~--~~~DLviVGr~~~~~s~~~~gl~~-W~e~~ 773 (816)
+.|++++|+..+ +++|++||||+.| | ++| |+=..
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVaRGGG--S-----iEDLW~FNd 214 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVARGGG--S-----IEDLWAFND 214 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCcc--h-----HHHHhccCh
Confidence 367777777764 4499999999987 5 455 75333
No 184
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=38.78 E-value=6.5e+02 Score=28.80 Aligned_cols=70 Identities=21% Similarity=0.158 Sum_probs=43.9
Q ss_pred hHHHHHhHHHH-----HHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 044119 341 SAVVKKSEIIM-----ENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAIL 412 (816)
Q Consensus 341 ~~l~~kle~~~-----~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~ 412 (816)
+...+.++.|. ..|++...-+-+=+.+|-..+ .+.....+..++...++-++.+.+....+|++++|+++
T Consensus 80 ~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklL--ika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~ 154 (414)
T PF03390_consen 80 ESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLL--IKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIF 154 (414)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 34444444443 345555555555556666555 23333345555666777778888888999999999976
No 185
>COG3748 Predicted membrane protein [Function unknown]
Probab=37.37 E-value=2.6e+02 Score=30.54 Aligned_cols=40 Identities=10% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHH
Q 044119 352 ENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFAR 392 (816)
Q Consensus 352 ~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K 392 (816)
+.+-+|+.|+++.-+..+..= +..+|.+..++.+.++..|
T Consensus 226 nylTLPVlF~MlSNHyp~~~g-t~fnWii~alv~l~gV~IR 265 (407)
T COG3748 226 NYLTLPVLFTMLSNHYPLAFG-TQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred ceehHHHHHHHHhccCccccc-CchhHHHHHHHHHHHHHHH
Confidence 567889999988777765443 5567876666665555544
No 186
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=37.28 E-value=3.2e+02 Score=34.01 Aligned_cols=65 Identities=12% Similarity=-0.084 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccC
Q 044119 140 IMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKP 211 (816)
Q Consensus 140 ~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~T 211 (816)
++-+-++....|++.|...+.+ +.............-++.+.+.+++..-++ ..++.+|.+++.-
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~------~~~l~l~~lm~~k 377 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPL------RDSLALGLLMSTK 377 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCch------hHHHHHHHHHHhh
Confidence 3444456667899999999988 333333334444444445555555443333 5666676666653
No 187
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=36.48 E-value=2.6e+02 Score=32.26 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=42.0
Q ss_pred eEEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcC
Q 044119 655 YDVAVFFLGGADDREVMALVSRMA-GHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNA 718 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 718 (816)
.+|++.+.||+|.---|.+..++. ..++..++++|+-..-. .+.+.++++.+++.+++.
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr-----~~s~~~~~~~~~~~~~l~ 75 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLS-----PNADSWVKHCEQVCQQWQ 75 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCC-----cchHHHHHHHHHHHHHcC
Confidence 589999999999987777777766 45688999999753211 122334567888877754
No 188
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=36.45 E-value=4.3e+02 Score=30.57 Aligned_cols=17 Identities=0% Similarity=-0.056 Sum_probs=10.1
Q ss_pred cCCChhHHHHHHHHhhc
Q 044119 97 LKQPKVVCNVLAGIILG 113 (816)
Q Consensus 97 l~~P~iv~~IlaGIilG 113 (816)
-|+|-++...+.|++-|
T Consensus 283 ~R~~wL~v~~~~~~~t~ 299 (449)
T TIGR00400 283 NRIIWLLVLLVSSTFTA 299 (449)
T ss_pred hccchHHHHHHHHHHHH
Confidence 35666666666666553
No 189
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=35.41 E-value=4.3e+02 Score=30.31 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=21.8
Q ss_pred HHHhHHHHHHHHHHHHHHHhhcccccc
Q 044119 344 VKKSEIIMENIFMPFFYIHIGQLFNVY 370 (816)
Q Consensus 344 ~~kle~~~~~~~~PlfF~~~G~~idl~ 370 (816)
..-++..+++.+|.+||..+|+.+.-.
T Consensus 59 ~~~l~~wiNDgLMaiFFf~vGLEiKrE 85 (423)
T PRK14853 59 SLSLGTWAADGLLAIFFFVVGLELKRE 85 (423)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHhHH
Confidence 344566778999999999999999643
No 190
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=34.97 E-value=5.9e+02 Score=27.18 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=31.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhcc
Q 044119 69 GANAFPVFLLQISLFSLISQLLHLALKRLKQPKVVCNVLAGIILGP 114 (816)
Q Consensus 69 l~~~l~~~llqi~lil~~~~l~~~ll~rl~~P~iv~~IlaGIilGP 114 (816)
+.+-+|+.+=...-++.++++..++++. .|..+-....|.++|.
T Consensus 54 ~~fL~~l~~G~~~gi~~~s~~i~~ll~~--yp~~t~~fF~GLIlgS 97 (257)
T PF04018_consen 54 LKFLLPLGIGILIGILLFSKVISYLLEN--YPIPTYSFFFGLILGS 97 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHH
Confidence 4455555555666677778888888874 6777777888888873
No 191
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=34.74 E-value=1.5e+02 Score=32.44 Aligned_cols=74 Identities=18% Similarity=0.202 Sum_probs=49.8
Q ss_pred HHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 044119 103 VCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISS 182 (816)
Q Consensus 103 v~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~ 182 (816)
+-.++.|+++|+. .+++++ .+..-..+-.-|+-|-.|-.+|+..+.+.+-.-+.+++..+++.....+
T Consensus 175 llP~iiG~iLGNL----D~~~r~--------fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~ 242 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRK--------FLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLY 242 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHH--------HHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 3346789998852 334333 2222233334577888999999999999998888888877777666555
Q ss_pred HHHHHH
Q 044119 183 FLTSLL 188 (816)
Q Consensus 183 ~~~~~l 188 (816)
....++
T Consensus 243 ~~dr~i 248 (314)
T PF03812_consen 243 LADRLI 248 (314)
T ss_pred HHHHHH
Confidence 555544
No 192
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=34.35 E-value=6.9e+02 Score=27.77 Aligned_cols=87 Identities=14% Similarity=0.090 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhhccCCCCch-----hHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 044119 321 NFMSGAVLTGLVVPAGPPLG-----SAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILAAYFARVAA 395 (816)
Q Consensus 321 ~~ilGaflaGL~i~~~~~~~-----~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~ 395 (816)
++.+=+.++|+++.-.++.. ..+.+-++.+ .....|+-.+.+|..+..........+......+++.++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 44445555566655443322 4556666666 78889999999999887554311223333333455666666666
Q ss_pred HHHHHHHhCCChH
Q 044119 396 IFLSLIFYKISIR 408 (816)
Q Consensus 396 ~~l~~~~~~~~~~ 408 (816)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777777776544
No 193
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=32.73 E-value=2.1e+02 Score=27.88 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=47.1
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCChHH
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTE 735 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~ 735 (816)
++++.|.||.|.--++.++.+. +..+..+++... ... ..|.+.++++.++.. ...+.+ .++. .
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~~~-~~~------~~~~~~~~~~~~~~g---~~~~~~--~~~~-~ 63 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFDYG-QRH------AKEEEAAKLIAEKLG---PSTYVP--ARNL-I 63 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEECC-CCC------hhHHHHHHHHHHHHC---CCEEEe--CcCH-H
Confidence 4789999999999999888763 224555655432 110 112345555655543 222222 1121 1
Q ss_pred HHHHHHhh--hcCccEEEEcccCC
Q 044119 736 LMSSIRLI--ENIYDLVIVGKQRG 757 (816)
Q Consensus 736 ~~~~i~~~--~~~~DLviVGr~~~ 757 (816)
....+.+. ..++|-++.|-..+
T Consensus 64 ~~~~l~~~a~~~g~~~i~~G~~~~ 87 (169)
T cd01995 64 FLSIAAAYAEALGAEAIIIGVNAE 87 (169)
T ss_pred HHHHHHHHHHHCCCCEEEEeeccC
Confidence 22333333 35689999998764
No 194
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=32.41 E-value=3.6e+02 Score=28.81 Aligned_cols=57 Identities=16% Similarity=0.305 Sum_probs=42.4
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcC
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNA 718 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 718 (816)
++|+|-+.||+|.=-+|.+...+.++ +.+.++++-..-.. +.+.+.+..+++.....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----~~~~~~~~~~~~~~~~~ 78 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----YSDQEAELVEKLCEKLG 78 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----ccchHHHHHHHHHHHhC
Confidence 68999999999999999999999988 99999987543111 12344456666766543
No 195
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=31.20 E-value=62 Score=33.69 Aligned_cols=125 Identities=7% Similarity=0.026 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCh------hHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhc
Q 044119 80 ISLFSLISQLLHLALKRLKQPK------VVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLK 153 (816)
Q Consensus 80 i~lil~~~~l~~~ll~rl~~P~------iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle 153 (816)
+.++...+...+++++--+.|. .++++++|+++-...+-. ..+ .+ ..+-..+..+.+....-..|++
T Consensus 102 ~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~-~~~--~~----~iv~s~l~t~a~~I~~ik~gLg 174 (252)
T KOG3826|consen 102 LIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVN-GAV--CA----PIVVSPLRTVALTIIKIKAGLG 174 (252)
T ss_pred eehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhh-hce--ee----eeeehhhhhccchHHHHHhhhc
Confidence 3455666667777777666555 999999997764321100 000 11 1344556777888888999999
Q ss_pred cChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHHHhccCcHHHH
Q 044119 154 MDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSVTLAKPFFPVI 216 (816)
Q Consensus 154 ~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~~vv 216 (816)
++.+.+++........++....+.....+..++++.... +.+++..|.........+.
T Consensus 175 t~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~-----ii~~~l~g~v~~~i~~~~~ 232 (252)
T KOG3826|consen 175 TLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLLAGP-----IIWAFLLGIVIGSILWRFP 232 (252)
T ss_pred ccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHhccc-----hHHHhccccceeeeecCCc
Confidence 999999988888887766666666555666666654332 3677777776665554443
No 196
>PRK10711 hypothetical protein; Provisional
Probab=31.08 E-value=6.4e+02 Score=26.44 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=29.4
Q ss_pred HHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044119 148 FIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLLHS 190 (816)
Q Consensus 148 F~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l~~ 190 (816)
|-.=+-=+.+.+||+++..+.--..|.++..+.+..++.+++.
T Consensus 73 LAvPLY~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~ 115 (231)
T PRK10711 73 LAFPLYEQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGA 115 (231)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3334445678888888888776677777777777777766653
No 197
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.69 E-value=2.4e+02 Score=23.74 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHHH
Q 044119 263 KTEITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYMV 302 (816)
Q Consensus 263 ~~~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~ 302 (816)
+.+++.++.++.++|+.|..+...++.+| |..|-.+.
T Consensus 9 ~ivl~ll~G~~~G~fiark~~~k~lk~NP---pine~~iR 45 (71)
T COG3763 9 LIVLALLAGLIGGFFIARKQMKKQLKDNP---PINEEMIR 45 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CCCHHHHH
Confidence 34445555566778888888888888777 45555444
No 198
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=30.51 E-value=2.8e+02 Score=30.21 Aligned_cols=74 Identities=16% Similarity=0.150 Sum_probs=49.9
Q ss_pred HHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHH
Q 044119 103 VCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISS 182 (816)
Q Consensus 103 v~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~ 182 (816)
+-.++.|+++|+. .++++++ +..-..+-.-|+-|-.|-.+|++.+.+.+-.-+.+|+...+++....+
T Consensus 175 ilPlliG~ilGNL----D~~~r~f--------l~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~ 242 (314)
T TIGR00793 175 VLPFLVGFALGNL----DPELRDF--------FSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLI 242 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHH--------hccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHH
Confidence 3446789998852 3333332 222222334578899999999999999888888888877777766666
Q ss_pred HHHHHH
Q 044119 183 FLTSLL 188 (816)
Q Consensus 183 ~~~~~l 188 (816)
....++
T Consensus 243 ~~dr~~ 248 (314)
T TIGR00793 243 LADKFI 248 (314)
T ss_pred HHHHHh
Confidence 655555
No 199
>PRK01821 hypothetical protein; Provisional
Probab=30.46 E-value=4.9e+02 Score=24.85 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=9.1
Q ss_pred HHHHHHHhhccc--ccccc
Q 044119 356 MPFFYIHIGQLF--NVYSI 372 (816)
Q Consensus 356 ~PlfF~~~G~~i--dl~~l 372 (816)
+|+||+=.|..+ ..+.+
T Consensus 71 m~LfFVPa~VGim~~~~ll 89 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLL 89 (133)
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 577777544443 34444
No 200
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=29.48 E-value=1.1e+02 Score=33.62 Aligned_cols=25 Identities=20% Similarity=0.509 Sum_probs=18.6
Q ss_pred hHHHHHHHHhhh-----cCccEEEEcccCC
Q 044119 733 STELMSSIRLIE-----NIYDLVIVGKQRG 757 (816)
Q Consensus 733 ~~~~~~~i~~~~-----~~~DLviVGr~~~ 757 (816)
..+++.+|+.+. .+||++|++|+.|
T Consensus 57 ~~~I~~al~~~~~~~~~~~~Dviii~RGGG 86 (319)
T PF02601_consen 57 AASIVSALRKANEMGQADDFDVIIIIRGGG 86 (319)
T ss_pred HHHHHHHHHHHHhccccccccEEEEecCCC
Confidence 355666666664 2599999999988
No 201
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=29.34 E-value=2.6e+02 Score=27.59 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=54.9
Q ss_pred eccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCChHHHHHH
Q 044119 660 FFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDSTELMSS 739 (816)
Q Consensus 660 ~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~ 739 (816)
+..||. ..-.+.+++.|+++-..++-++. + +. ..+.-+++.++++++. ..+|.|...-+.|.+++.+.
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~---r-~~----~~~~~~~~~i~~l~~~---g~~v~~~~~Dv~d~~~v~~~ 71 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLG---R-SG----APSAEAEAAIRELESA---GARVEYVQCDVTDPEAVAAA 71 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEE---S-SG----GGSTTHHHHHHHHHHT---T-EEEEEE--TTSHHHHHHH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEec---c-CC----CccHHHHHHHHHHHhC---CCceeeeccCccCHHHHHHH
Confidence 345654 56889999999999888877764 2 10 1122233577778764 45899999889999999999
Q ss_pred HHhhhcCc---cEEEEcccCC
Q 044119 740 IRLIENIY---DLVIVGKQRG 757 (816)
Q Consensus 740 i~~~~~~~---DLviVGr~~~ 757 (816)
+.+...++ |-||-+.+..
T Consensus 72 ~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 72 LAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp HHTSHTTSS-EEEEEE-----
T ss_pred HHHHHhccCCcceeeeeeeee
Confidence 99886554 6677776653
No 202
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=28.93 E-value=3.5e+02 Score=26.72 Aligned_cols=80 Identities=19% Similarity=0.121 Sum_probs=43.1
Q ss_pred CcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEE---eCChHHHHHHH
Q 044119 664 GADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMM---VNDSTELMSSI 740 (816)
Q Consensus 664 G~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~---v~~~~~~~~~i 740 (816)
.+.|.|+++.|++|++ .+.+++++-+-.+ .++..+++... .+.++|...+-- -.+.+....++
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~-----------~~~~~~~~~~~--~Gad~v~~~~~~~~~~~~~~~~a~~l 83 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVIGPP-----------AAEVALREALA--MGADKVLLVEDPALAGYDPEATAKAL 83 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEECCh-----------HHHHHHHHHHH--hCCCEEEEEecCcccCCChHHHHHHH
Confidence 3788999999999987 4456666643211 11111222211 133455443311 11233334444
Q ss_pred Hhh--hcCccEEEEcccCC
Q 044119 741 RLI--ENIYDLVIVGKQRG 757 (816)
Q Consensus 741 ~~~--~~~~DLviVGr~~~ 757 (816)
.++ +.++|++++|.+..
T Consensus 84 ~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 84 AALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHhCCCEEEECCccc
Confidence 443 24699999999974
No 203
>PRK01658 holin-like protein; Validated
Probab=28.73 E-value=4.9e+02 Score=24.37 Aligned_cols=18 Identities=17% Similarity=0.167 Sum_probs=9.4
Q ss_pred HHHHHHHHhhccc--ccccc
Q 044119 355 FMPFFYIHIGQLF--NVYSI 372 (816)
Q Consensus 355 ~~PlfF~~~G~~i--dl~~l 372 (816)
-+|+||+=.|..+ ..+.+
T Consensus 65 ~m~llFVPa~VGi~~~~~ll 84 (122)
T PRK01658 65 ELPLFFIPSAVGVMNYGDFL 84 (122)
T ss_pred HHHHHHHHhhhHHHHhHHHH
Confidence 3577777444443 34444
No 204
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=28.71 E-value=74 Score=30.03 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=28.7
Q ss_pred eeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCC
Q 044119 576 SQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGL 612 (816)
Q Consensus 576 v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~ 612 (816)
+.-..++=|..+||..|.++|++-++|++|-|+..+.
T Consensus 71 a~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 71 ADLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred CcEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 5566788899999999999999999999999997654
No 205
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=28.46 E-value=1.3e+02 Score=29.54 Aligned_cols=37 Identities=14% Similarity=0.325 Sum_probs=30.7
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCC--CeEEEEEEEEe
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHP--SLTVTVFKIDF 692 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~ 692 (816)
+|++.|.||.|.--.+.++.+..++- +.++..+++-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999999998877543 77888888654
No 206
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=28.39 E-value=1.4e+02 Score=28.91 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=32.5
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
++++-|.||.|..-.|.++.+...+- .++.+... .|-..-.++++++.+++
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg-------~e~p~t~~~~~~~~~~~ 51 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTG-------YEFPETYEFVDELAKRY 51 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-S-------TB-HHHHHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecC-------ccCHHHHHHHHHHHhhh
Confidence 47899999999999999999988773 45554321 11112235677777765
No 207
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=28.16 E-value=1.2e+02 Score=29.08 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=25.7
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKI 690 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~ 690 (816)
+|++.|.||.|.--.|.++.+...+. -.+.++++
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~ 34 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFL 34 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEe
Confidence 48899999999999888888766542 34556654
No 208
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=27.10 E-value=9.8e+02 Score=27.31 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=83.6
Q ss_pred HHHHHHHHHHhChhHHHHHHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccchhhHHHHHHHHHH
Q 044119 308 PGITGALSDATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITNWKAFAILQIIILA 387 (816)
Q Consensus 308 ~~~~~~lae~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~~~~~~~~~~ii~~ 387 (816)
.+..+.++..+.=..++|++.+-+++... + +.-....|+|+...| +..-..+.+ . ..-++.+.+
T Consensus 199 Gl~~~ai~~ll~~~~~~as~~F~LAlnyK---------Q---MeLY~A~pfF~fLLg-~c~k~k~~~--~-f~ri~~ia~ 262 (510)
T KOG2575|consen 199 GLTLYAIAALLKNFYVLASVLFVLALNYK---------Q---MELYHALPFFAFLLG-SCLKPKLFN--S-FARIIKIAL 262 (510)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHH---------H---HHHHhchHHHHHHHH-HHhcccchH--H-HHHHHHHHH
Confidence 34455566666777889999998887753 1 123556788888888 555444411 2 223344445
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhcc-------ccCcchhhHHHHHHHHHHHhHhHHH
Q 044119 388 AYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHK-------YVDDQTVTTIMLSHTAVTAIVIPLI 460 (816)
Q Consensus 388 ~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~-------~i~~~~f~~lvl~vll~t~i~~pli 460 (816)
+.++-++..+++-.+.+-...+-+- =+.=-.||..|=-+++.+-... +...+....+.+...+ -...|..+
T Consensus 263 ~Vv~TF~iiw~P~~~~~~~~~qvl~-RlFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~iSl~~Tl-i~~LPs~v 340 (510)
T KOG2575|consen 263 AVVGTFVIIWLPFLLSGDTALQVLH-RLFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQVISLAATL-IGSLPSMV 340 (510)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHH-HhCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHhHHHH
Confidence 5667777788877776644444332 1111358999988888875433 2233333333333222 12245556
Q ss_pred HhhcCCCccchhhh
Q 044119 461 SMYYDPNSTRLQSS 474 (816)
Q Consensus 461 ~~ly~p~~~~~~~~ 474 (816)
..+.+|++ +-..+
T Consensus 341 ~l~L~P~~-~~f~~ 353 (510)
T KOG2575|consen 341 VLFLRPTN-KGFLY 353 (510)
T ss_pred HHhhcccc-cchhh
Confidence 66666776 54333
No 209
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=26.85 E-value=3.4e+02 Score=25.80 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=19.8
Q ss_pred eEEEEeccCCcchHHHHHHHHHHh
Q 044119 655 YDVAVFFLGGADDREVMALVSRMA 678 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma 678 (816)
+.+++.+.||.|.--++.++.+.-
T Consensus 2 yd~~v~lSGG~DSs~ll~l~~~~~ 25 (154)
T cd01996 2 YDCIIGVSGGKDSSYALYLLKEKY 25 (154)
T ss_pred CCEEEECCCchhHHHHHHHHHHHh
Confidence 568999999999998888886643
No 210
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=26.40 E-value=4.9e+02 Score=29.36 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 141 MGGIYFIFIVTLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLL 188 (816)
Q Consensus 141 iGl~~llF~~Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l 188 (816)
.|+.+.++..|.+.|++.+++..++.+.+++.-+. -+.+.-..++.+
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~-q~~i~pl~~f~~ 163 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVP-QYLIMPLLGFLL 163 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHH-HHHHHHHHHHhh
Confidence 56777889999999999999999888766543322 454444444443
No 211
>PRK00536 speE spermidine synthase; Provisional
Probab=25.03 E-value=2e+02 Score=30.71 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=36.4
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCCh
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDS 733 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~ 733 (816)
..||++ +||-|-- .++...+||. +++++-+- +.--++-.+++-++.... .+.|+.-..
T Consensus 73 pk~VLI--iGGGDGg----~~REvLkh~~-~v~mVeID--------~~Vv~~~k~~lP~~~~~~-~DpRv~l~~------ 130 (262)
T PRK00536 73 LKEVLI--VDGFDLE----LAHQLFKYDT-HVDFVQAD--------EKILDSFISFFPHFHEVK-NNKNFTHAK------ 130 (262)
T ss_pred CCeEEE--EcCCchH----HHHHHHCcCC-eeEEEECC--------HHHHHHHHHHCHHHHHhh-cCCCEEEee------
Confidence 357777 5666532 2333445665 77777321 011122223334444332 345665432
Q ss_pred HHHHHHHHhhhcCccEEEEccc
Q 044119 734 TELMSSIRLIENIYDLVIVGKQ 755 (816)
Q Consensus 734 ~~~~~~i~~~~~~~DLviVGr~ 755 (816)
. ..+...+.||+||+=..
T Consensus 131 -~---~~~~~~~~fDVIIvDs~ 148 (262)
T PRK00536 131 -Q---LLDLDIKKYDLIICLQE 148 (262)
T ss_pred -h---hhhccCCcCCEEEEcCC
Confidence 1 11222357999998743
No 212
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=24.99 E-value=6.4e+02 Score=24.85 Aligned_cols=15 Identities=47% Similarity=0.875 Sum_probs=12.5
Q ss_pred hhHHHHHHHHhhccc
Q 044119 101 KVVCNVLAGIILGPS 115 (816)
Q Consensus 101 ~iv~~IlaGIilGP~ 115 (816)
.-+..+++|+++||.
T Consensus 34 ~~i~~vlaavllGP~ 48 (160)
T TIGR02359 34 QHFVNVIAGVLLGPW 48 (160)
T ss_pred hHHHHHHHHHHHchH
Confidence 457778999999995
No 213
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=24.96 E-value=9.8e+02 Score=26.56 Aligned_cols=56 Identities=16% Similarity=0.077 Sum_probs=32.3
Q ss_pred HHhccCCChhHHHHHHHHhhccccccccccccc-cCCcchHHHHHHHHHHHHHHHHHH
Q 044119 93 ALKRLKQPKVVCNVLAGIILGPSVLGHFERWNA-IFHPEEMLLVNTMSIMGGIYFIFI 149 (816)
Q Consensus 93 ll~rl~~P~iv~~IlaGIilGP~~lg~~~~~~~-lfp~~~~~~l~~la~iGl~~llF~ 149 (816)
+...+|+|+++.-+++|..+|-++.=.-.-+++ +-. .+.--.+.-+.+|.++.++.
T Consensus 55 ii~~~RLPR~l~ailvG~~LavaG~llQ~l~rNpLA~-P~ilGissGA~l~~v~~~~~ 111 (335)
T PRK10441 55 IVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLAD-PGLLGVNAGASFAIVLGAAL 111 (335)
T ss_pred hHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-cchhhHHhHHHHHHHHHHHH
Confidence 567889999999999999998443211001111 111 12333445566676665544
No 214
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=24.95 E-value=9.6e+02 Score=26.44 Aligned_cols=68 Identities=12% Similarity=0.066 Sum_probs=37.0
Q ss_pred Hhhcccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHH---hHHHHHHHHHHHHh
Q 044119 362 HIGQLFNVYSITN-WKAFAILQIIILAAYFARVAAIFLSLIFY-KISIRNAILFGLIL---NIKGVIELLLLTEW 431 (816)
Q Consensus 362 ~~G~~idl~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~~-~~~~~e~l~lgl~m---~~kG~v~l~~~~~~ 431 (816)
..|+++++.++.+ ...+....+..+.-++...+.++..++.+ +.+.. +.+|+.+ +|-|..+.+...++
T Consensus 55 ~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 55 PPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred HhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 3346666666511 22344455555556666777777777653 65543 6666654 45555555444433
No 215
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=24.52 E-value=1.3e+03 Score=27.85 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 261 LLKTEITFCALAFFMFFIVRPAVKWIIRT 289 (816)
Q Consensus 261 ~l~~~l~~v~~~~~~~~v~r~~~~~l~~r 289 (816)
++...++.+.-.+...++.|+++.|+.++
T Consensus 568 AvTL~iGIl~S~ftAi~vtr~l~~~~~~~ 596 (604)
T PRK12933 568 ALTLGLGLLTSMFTGIFASRALINLVYGR 596 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344444444445667778877777655
No 216
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=24.15 E-value=2.4e+02 Score=30.00 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=24.2
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEE
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKID 691 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 691 (816)
.+++.|.||.|+-..|.++.+...+ +.|+.+-
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~D 72 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLD 72 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCC----CcEEEEe
Confidence 3788899999998888888777766 6666543
No 217
>PLN02366 spermidine synthase
Probab=23.96 E-value=2.1e+02 Score=31.43 Aligned_cols=30 Identities=27% Similarity=0.495 Sum_probs=18.0
Q ss_pred CCceEEEEEEeCChHHHHHHHHhh-hcCccEEEEccc
Q 044119 720 NACVVCREMMVNDSTELMSSIRLI-ENIYDLVIVGKQ 755 (816)
Q Consensus 720 ~~~v~y~e~~v~~~~~~~~~i~~~-~~~~DLviVGr~ 755 (816)
+.|+. .+..|+.+. +++. .+.||+|++-..
T Consensus 144 dpRv~---vi~~Da~~~---l~~~~~~~yDvIi~D~~ 174 (308)
T PLN02366 144 DPRVN---LHIGDGVEF---LKNAPEGTYDAIIVDSS 174 (308)
T ss_pred CCceE---EEEChHHHH---HhhccCCCCCEEEEcCC
Confidence 34553 455666554 3443 356999999543
No 218
>COG2431 Predicted membrane protein [Function unknown]
Probab=23.57 E-value=9.5e+02 Score=25.93 Aligned_cols=47 Identities=6% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHH
Q 044119 383 IIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLT 429 (816)
Q Consensus 383 ~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~ 429 (816)
..-+..+++-.++..+.+...++|+.++++++..++.-......+..
T Consensus 167 ~l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 167 ILAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 34445567788888999999999999999998887777666665554
No 219
>PRK04148 hypothetical protein; Provisional
Probab=23.32 E-value=1.1e+02 Score=29.17 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=32.7
Q ss_pred eeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCC
Q 044119 576 SQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLE 613 (816)
Q Consensus 576 v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~ 613 (816)
..-..++=|..+|+..|.++|++-++|++|-|...+..
T Consensus 78 a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 78 AKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 34556777999999999999999999999999987653
No 220
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=23.25 E-value=6.5e+02 Score=23.88 Aligned_cols=107 Identities=14% Similarity=0.021 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCh---hHHHHHHHHhhccccccccccccccCCcchHHHHHHHHHHHHHHHHHHh
Q 044119 74 PVFLLQISLFSLISQLLHLALKRLKQPK---VVCNVLAGIILGPSVLGHFERWNAIFHPEEMLLVNTMSIMGGIYFIFIV 150 (816)
Q Consensus 74 ~~~llqi~lil~~~~l~~~ll~rl~~P~---iv~~IlaGIilGP~~lg~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~ 150 (816)
..++.|+++++.+..+..++.+-+++|- ++|+++-=.++. ++.++.- .+ ....-..++++++.|+==..
T Consensus 5 ~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~---~~iv~l~-wv----~~~a~~Ll~~m~llFVPa~V 76 (128)
T COG1380 5 MQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLA---LKIVKLE-WV----ERGATFLLRNMALLFVPAGV 76 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHH---hCCccHH-HH----HHHHHHHHHHHHHHHhcchH
Confidence 4688999999999988888888787763 444433212221 2333210 00 01122233444444333335
Q ss_pred hhccChhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 151 TLKMDKARILKTVRNGWSVSVTCLVVPFTISSFLTSLL 188 (816)
Q Consensus 151 Gle~d~~~l~~~~~~~~~ia~~~~l~p~~lg~~~~~~l 188 (816)
|+=-..+.+...+.+.+...+.+.++.+.....+...+
T Consensus 77 gVm~y~~~l~~~~~~Il~~~iiST~lv~~vtg~~~~~l 114 (128)
T COG1380 77 GVMNYFDLLAADGLPILVVIIISTLLVLLVTGWVVQLL 114 (128)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66446677777777777766666666655544444433
No 221
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.96 E-value=1.9e+02 Score=26.15 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHhhhCC-CCCchHHHHHHHHHhc
Q 044119 173 CLVVPFTISSFLTSLLHSYIP-GVNKGPFLYFFSVTLA 209 (816)
Q Consensus 173 ~~l~p~~lg~~~~~~l~~~~~-~~~~~~~~l~lg~~ls 209 (816)
++++|.++|.+++.++...++ ++......+++|++.+
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G 88 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIG 88 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHH
Confidence 357888899999998876665 2222233444555443
No 222
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=22.85 E-value=1.4e+02 Score=33.65 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=21.8
Q ss_pred HHhHHHHHHHHHHHHHHHhhccccccc
Q 044119 345 KKSEIIMENIFMPFFYIHIGQLFNVYS 371 (816)
Q Consensus 345 ~kle~~~~~~~~PlfF~~~G~~idl~~ 371 (816)
..++..+++.+|.+||..+|+.+.-+.
T Consensus 54 ~~l~~WiNDgLMaiFFf~vGLEiKrE~ 80 (383)
T PRK14854 54 KNLMHWINDGLMAIYFLYIGLEIKREI 80 (383)
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345667789999999999999998533
No 223
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes. Substrates shown to be transported by these proteins include citrate and phosphate []. This entry also contains the melanocyte-specific transporter protein P, mutation of which leads to albinism []. Another protein in this entry, SAC1, has been shown to regulate the sulphur deprivation response in Chlamydomonas by inducing cysteine biosynthesis, though its precise role in this induction is not known [].; GO: 0015137 citrate transmembrane transporter activity, 0015746 citrate transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=22.77 E-value=1e+03 Score=26.01 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=12.9
Q ss_pred HHHHHHHHHhccccCChh
Q 044119 213 FPVIAHAMNELNLLTSEL 230 (816)
Q Consensus 213 ~~vv~~iL~el~ll~s~~ 230 (816)
.|++.++.++.|+.+++.
T Consensus 117 ~Pi~~~~~~~~~i~~~~~ 134 (351)
T PF03600_consen 117 IPIVLSLARKLGIPPSPL 134 (351)
T ss_pred HHHHHHHHHHcCCChHHH
Confidence 378888888888655543
No 224
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=22.13 E-value=6.2e+02 Score=26.26 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=25.9
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEE
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKI 690 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~ 690 (816)
.++++.|.||+|+--.|-++.+.. +|+ +.|+.+
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~-~~~--i~vv~v 58 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS-EPM--IPVIFI 58 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh-CCC--CCEEEE
Confidence 369999999999999999999976 344 445543
No 225
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=21.75 E-value=3.1e+02 Score=22.74 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHH
Q 044119 265 EITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIY 300 (816)
Q Consensus 265 ~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~ 300 (816)
++++++.+++++|+.|..+...++.+| |.+|-.
T Consensus 4 ilali~G~~~Gff~ar~~~~k~l~~NP---pine~m 36 (64)
T PF03672_consen 4 ILALIVGAVIGFFIARKYMEKQLKENP---PINEKM 36 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHH
Confidence 444455556677788877777777665 345544
No 226
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=21.73 E-value=5.3e+02 Score=27.77 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=48.1
Q ss_pred HHHHHHHhhcccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH---hHHHHHHHHHHHHh
Q 044119 356 MPFFYIHIGQLFNVYSITN-WKAFAILQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLIL---NIKGVIELLLLTEW 431 (816)
Q Consensus 356 ~PlfF~~~G~~idl~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m---~~kG~v~l~~~~~~ 431 (816)
+.+.+...|++++..++.+ ...+.......+.-++.-.+.++..+..++.+. ....|+.+ .|-|....+.....
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~--~~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPP--ELAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHHheeeCCCchHHHHHHHHh
Confidence 3444556778877766621 111122333333445556666666667766553 33333332 44444444333322
Q ss_pred hhccccCcc-hhhHHHHHHHHHHHhHhHHHHhhc
Q 044119 432 RTHKYVDDQ-TVTTIMLSHTAVTAIVIPLISMYY 464 (816)
Q Consensus 432 ~~~~~i~~~-~f~~lvl~vll~t~i~~pli~~ly 464 (816)
|. |.+ .-...+++.++ +.++.|+.-.++
T Consensus 92 ---~g-n~~la~~~~~~stll-s~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 ---KG-DMALSISMTTCSTLL-ALGMMPLLLYIY 120 (286)
T ss_pred ---CC-CHhhhhHHHHHHHHH-HHHHHHHHHHHH
Confidence 11 222 22233334444 566666665555
No 227
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=21.48 E-value=7e+02 Score=23.64 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=20.4
Q ss_pred HHHHHHHHhhcccc--cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 355 FMPFFYIHIGQLFN--VYSITNWKAFAILQIIILAAYFARVAAIFLSLIF 402 (816)
Q Consensus 355 ~~PlfF~~~G~~id--l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~ 402 (816)
.+++||+=.|..+- .+.+ ....|.....+++-.++.=...++++-+.
T Consensus 66 ~m~llFVPa~VgVm~y~~~l-~~~~~~Il~~~iiST~lv~~vtg~~~~~l 114 (128)
T COG1380 66 NMALLFVPAGVGVMNYFDLL-AADGLPILVVIIISTLLVLLVTGWVVQLL 114 (128)
T ss_pred HHHHHHhcchHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777775555442 2333 32333333333333333334444444333
No 228
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=21.47 E-value=2.1e+02 Score=27.26 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=42.6
Q ss_pred CChhHHHHHHHHhcCCCEEEEcCCCCCCcc--hhhhhhHHHHHHHhhcC-CCcEEEEecCCC
Q 044119 586 HTMHESICKLAEDKFAPLILIPFHKGLEFQ--EIETCLHQLNLNIQAYA-QCTIGILVDSGL 644 (816)
Q Consensus 586 ~~m~~~I~~~A~e~~~~liilp~h~~~~~~--~~~~~~~~~n~~vl~~A-pCsVgIlVdrg~ 644 (816)
....+.+.+++++++++.+|+|+-.+.... +.....+.+.+++-++. ++.| .++|...
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 578999999999999999999985544221 12222777787877776 7888 6787644
No 229
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=21.46 E-value=2.4e+02 Score=29.91 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=28.6
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcC--CCeEEEEEEEE
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGH--PSLTVTVFKID 691 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~--~~v~ltvvr~~ 691 (816)
.+|+|.+.||.|.--.|.++.++.++ .+.++..+++-
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 58999999999988777777777654 35677777754
No 230
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=21.03 E-value=8.6e+02 Score=24.48 Aligned_cols=125 Identities=12% Similarity=0.186 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHHHHHHHHHHHH---HhChhHHHHHHHHhhhccCCCCchhHHHHHhHH-
Q 044119 274 FMFFIVRPAVKWIIRTTPEGKAVKEIYMVAMLLLPGITGALSD---ATGLNFMSGAVLTGLVVPAGPPLGSAVVKKSEI- 349 (816)
Q Consensus 274 ~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~~~~~~lae---~lG~~~ilGaflaGL~i~~~~~~~~~l~~kle~- 349 (816)
+..++..+..-.+..|.++. ....++.++..++. +++. ..-...+++++++=++...+ ..++.....+..
T Consensus 41 i~al~~g~vyml~~~KV~K~----G~~~i~~~i~gl~~-~~~G~~~~~~~~~ii~gliaeli~~~g-~Yks~~~~~ia~~ 114 (189)
T TIGR02185 41 ITAFLVGIIFFLMVAKVPKR----GVIFIFGILLGLLF-FLMGMYWPMIISSIIGGLLADIIASTG-GYKNKRKVTIAYV 114 (189)
T ss_pred HHHHHHhHHHhhhhhhcCCc----cHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHH
Confidence 34445566666667776642 12222222111111 1111 12334556667777766544 444332222221
Q ss_pred ----H-HHHHHHHHHHHHhhccc-------c---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 044119 350 ----I-MENIFMPFFYIHIGQLF-------N---VYSITNWKAFAILQIIILAAYFARVAAIFLSLIFYK 404 (816)
Q Consensus 350 ----~-~~~~~~PlfF~~~G~~i-------d---l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 404 (816)
+ ..+-++|+||..-...- + ...+.+....+...+.++...++=++|+++..+..|
T Consensus 115 ~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 115 LFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAIWAVIMIVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12335788774322211 1 111111112233445555666677888888877664
No 231
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=20.90 E-value=5.6e+02 Score=28.26 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhHHHHHHHHHHHHhhhccccCcchhhHHHHHH
Q 044119 381 LQIIILAAYFARVAAIFLSLIFYKISIRNAILFGLILNIKGVIELLLLTEWRTHKYVDDQTVTTIMLSH 449 (816)
Q Consensus 381 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~kG~v~l~~~~~~~~~~~i~~~~f~~lvl~v 449 (816)
+...+++.++.-+.+-.+..++.|++..|+..++---+.-+.++++.+...++..-+..+-|...++..
T Consensus 57 ~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~al 125 (327)
T PF05982_consen 57 LLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLAL 125 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHH
Confidence 444445555555555555566689999999999877677777777777777777777777766554433
No 232
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=20.58 E-value=4.9e+02 Score=30.60 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=56.8
Q ss_pred cchHHHHHHHHHHhcCCCeE--EEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeC--Ch----HHH
Q 044119 665 ADDREVMALVSRMAGHPSLT--VTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVN--DS----TEL 736 (816)
Q Consensus 665 ~ddreAL~~a~rma~~~~v~--ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~--~~----~~~ 736 (816)
+|.+...+....++.|||+- +.|+-+ . .|...-+++.++.+.+ .+..+|.+...--. +. +..
T Consensus 173 ~d~~~~~r~L~g~~~hPNvgg~vLvvgL--G-------CE~~~~~~l~~~i~~~-~~~~~v~~l~iQ~~g~g~~~ti~~g 242 (507)
T TIGR03248 173 PDAIVPIRTLRNIALNPNFGGEAMVVGL--G-------CEKLQPERLLPEDTSP-AGLGDAGVYRLQDERHGFAAMIEAI 242 (507)
T ss_pred cHHHHHHHHHHHhccCCccCCEEEEEEe--C-------cccCCHHHHHHhhccc-cCCCceEEEEEEccCCCHHHHHHHH
Confidence 33445566778889999996 455543 1 1222223444444322 12356777554322 22 222
Q ss_pred HHHHHhhhc--------CccE--EEEcccCCCCCcccccCCCccCCCccchhhhhhhcC
Q 044119 737 MSSIRLIEN--------IYDL--VIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASA 785 (816)
Q Consensus 737 ~~~i~~~~~--------~~DL--viVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~ 785 (816)
++.+++|.. ..++ .+||-.-| .|--++|+ +..|-+|...|.|.+.
T Consensus 243 ~~~~~~l~~~a~~~~R~~~pls~L~vGl~CG-GSD~~SGi---tANPavG~~sD~LV~~ 297 (507)
T TIGR03248 243 MEMAERRLAKLNRRRRETVPASELVVGMQCG-GSDAFSGV---TANPAVGFAADLLVRA 297 (507)
T ss_pred HHHHHHHHHHhhhCCcccCCHHHcEEEeecC-CCCCcccc---ccChHHHHHHHHHHHc
Confidence 333333311 1121 44555443 25446666 6799999999999963
No 233
>PRK14561 hypothetical protein; Provisional
Probab=20.55 E-value=2.1e+02 Score=28.98 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=18.8
Q ss_pred EEEEeccCCcchHHHHHHHHHH
Q 044119 656 DVAVFFLGGADDREVMALVSRM 677 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rm 677 (816)
+|++.|.||.|.--.+..+.+.
T Consensus 2 kV~ValSGG~DSslll~~l~~~ 23 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF 23 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc
Confidence 6999999999999988777654
No 234
>PRK01844 hypothetical protein; Provisional
Probab=20.53 E-value=4.9e+02 Score=22.10 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhHHH
Q 044119 265 EITFCALAFFMFFIVRPAVKWIIRTTPEGKAVKEIYM 301 (816)
Q Consensus 265 ~l~~v~~~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~ 301 (816)
++++++.+++++|+.|..+...++.+| |.+|-.+
T Consensus 11 I~~li~G~~~Gff~ark~~~k~lk~NP---pine~mi 44 (72)
T PRK01844 11 VVALVAGVALGFFIARKYMMNYLQKNP---PINEQML 44 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCHHHH
Confidence 334444556677888888877778776 3555443
Done!