Query 044119
Match_columns 816
No_of_seqs 309 out of 2061
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 6.5E-24 2.2E-28 232.6 11.0 303 133-464 58-384 (388)
2 3mt0_A Uncharacterized protein 99.5 2.5E-13 8.6E-18 145.2 21.1 256 493-801 8-278 (290)
3 3olq_A Universal stress protei 99.5 7E-13 2.4E-17 143.4 19.5 276 493-801 8-307 (319)
4 3loq_A Universal stress protei 99.5 1.9E-13 6.4E-18 146.4 14.1 264 493-801 23-292 (294)
5 3cis_A Uncharacterized protein 99.4 2E-12 7E-17 139.4 18.2 273 492-800 19-307 (309)
6 3ab8_A Putative uncharacterize 99.4 5E-12 1.7E-16 133.2 15.8 255 494-798 2-268 (268)
7 3s3t_A Nucleotide-binding prot 98.3 2.1E-06 7.3E-11 80.9 10.3 134 493-638 6-144 (146)
8 3s3t_A Nucleotide-binding prot 98.3 6.4E-06 2.2E-10 77.5 13.4 129 654-798 5-146 (146)
9 1mjh_A Protein (ATP-binding do 98.3 7.6E-06 2.6E-10 78.6 13.1 136 493-638 6-156 (162)
10 3hgm_A Universal stress protei 98.2 2.3E-06 7.8E-11 80.7 8.1 135 494-638 4-146 (147)
11 3fdx_A Putative filament prote 98.2 8.5E-06 2.9E-10 76.4 11.9 127 655-798 2-143 (143)
12 3idf_A USP-like protein; unive 98.2 1.6E-05 5.6E-10 74.0 13.1 125 655-798 2-138 (138)
13 2dum_A Hypothetical protein PH 98.2 1.2E-05 4.2E-10 77.9 12.7 135 493-639 6-154 (170)
14 3fg9_A Protein of universal st 98.2 3E-06 1E-10 81.1 7.7 136 492-638 15-154 (156)
15 2dum_A Hypothetical protein PH 98.1 2E-05 6.9E-10 76.4 13.5 133 654-801 5-158 (170)
16 3hgm_A Universal stress protei 98.1 7.2E-06 2.5E-10 77.2 9.8 127 655-797 3-147 (147)
17 2z08_A Universal stress protei 98.1 1.3E-05 4.4E-10 74.8 11.2 127 655-798 3-137 (137)
18 3tnj_A Universal stress protei 98.1 1.2E-05 4.1E-10 76.1 11.2 129 654-800 6-148 (150)
19 3dlo_A Universal stress protei 98.1 9.3E-06 3.2E-10 77.9 10.4 128 654-798 24-155 (155)
20 1mjh_A Protein (ATP-binding do 98.1 2.1E-05 7.1E-10 75.5 12.8 131 654-800 5-160 (162)
21 3fdx_A Putative filament prote 98.1 8.2E-06 2.8E-10 76.5 9.4 134 493-638 2-141 (143)
22 3dlo_A Universal stress protei 98.0 7.4E-06 2.5E-10 78.6 7.9 127 493-638 25-153 (155)
23 3fg9_A Protein of universal st 98.0 1.5E-05 5.2E-10 76.1 9.9 128 654-798 15-156 (156)
24 2z08_A Universal stress protei 98.0 1.3E-05 4.6E-10 74.6 9.3 130 494-638 4-135 (137)
25 2gm3_A Unknown protein; AT3G01 98.0 2.8E-05 9.6E-10 75.8 11.8 139 493-639 6-161 (175)
26 1jmv_A USPA, universal stress 98.0 2.4E-05 8.1E-10 73.2 9.7 126 655-800 3-139 (141)
27 1tq8_A Hypothetical protein RV 98.0 2.6E-05 8.8E-10 75.5 10.1 130 654-800 17-159 (163)
28 1jmv_A USPA, universal stress 98.0 5.4E-05 1.8E-09 70.7 11.8 130 494-639 4-136 (141)
29 3idf_A USP-like protein; unive 97.9 1.5E-05 5E-10 74.4 7.7 131 494-638 3-136 (138)
30 1tq8_A Hypothetical protein RV 97.9 6.5E-05 2.2E-09 72.6 11.4 136 492-639 17-156 (163)
31 3tnj_A Universal stress protei 97.8 3.1E-05 1.1E-09 73.2 7.8 134 493-639 7-145 (150)
32 1q77_A Hypothetical protein AQ 97.8 0.00018 6.2E-09 66.8 12.1 98 654-756 4-119 (138)
33 2gm3_A Unknown protein; AT3G01 97.7 0.0004 1.4E-08 67.5 13.7 131 654-800 5-164 (175)
34 3ab8_A Putative uncharacterize 97.5 0.0002 6.8E-09 74.6 8.9 129 656-801 2-151 (268)
35 3cis_A Uncharacterized protein 97.5 0.00016 5.6E-09 77.2 8.4 131 653-801 18-163 (309)
36 3zux_A Transporter, ASBTNM; tr 97.4 0.14 4.9E-06 55.1 29.9 71 390-464 239-310 (332)
37 1q77_A Hypothetical protein AQ 97.3 0.0003 1E-08 65.3 6.8 125 493-638 5-136 (138)
38 3mt0_A Uncharacterized protein 97.3 0.00057 1.9E-08 72.2 9.8 122 654-799 7-128 (290)
39 3olq_A Universal stress protei 97.2 0.0014 4.8E-08 70.0 11.6 133 654-801 7-152 (319)
40 3loq_A Universal stress protei 97.2 0.00091 3.1E-08 70.7 10.0 119 491-639 169-288 (294)
41 3g40_A Na-K-CL cotransporter; 96.3 0.053 1.8E-06 56.4 14.4 221 492-757 20-255 (294)
42 3zux_A Transporter, ASBTNM; tr 70.7 23 0.0008 37.6 11.3 124 326-464 27-155 (332)
43 1efp_B ETF, protein (electron 65.3 11 0.00038 38.5 7.0 92 664-769 36-141 (252)
44 1efv_B Electron transfer flavo 63.4 11 0.00038 38.6 6.6 92 664-769 39-144 (255)
45 1zun_A Sulfate adenylyltransfe 63.1 7.9 0.00027 41.2 5.6 56 656-718 48-103 (325)
46 1o97_C Electron transferring f 59.1 9.1 0.00031 39.4 5.1 93 664-769 36-140 (264)
47 2wsi_A FAD synthetase; transfe 53.9 18 0.00062 38.0 6.4 92 656-758 55-169 (306)
48 2l0e_A Sodium/hydrogen exchang 43.5 6.8 0.00023 26.8 0.7 27 199-225 4-30 (33)
49 3fwk_A FMN adenylyltransferase 41.3 86 0.0029 32.8 9.1 91 656-757 60-171 (308)
50 1ni5_A Putative cell cycle pro 36.7 69 0.0024 35.2 8.0 95 655-756 14-118 (433)
51 1wy5_A TILS, hypothetical UPF0 36.1 65 0.0022 33.7 7.4 59 655-718 25-84 (317)
52 3a2k_A TRNA(Ile)-lysidine synt 31.7 58 0.002 36.2 6.4 59 655-717 19-77 (464)
53 1iv0_A Hypothetical protein; r 30.9 60 0.002 27.9 4.9 65 576-642 25-93 (98)
54 2k3c_A TMIX peptide; membrane 30.9 0.88 3E-05 31.2 -5.4 28 309-336 4-31 (33)
55 2oq2_A Phosphoadenosine phosph 28.5 50 0.0017 33.6 4.8 55 656-718 43-97 (261)
56 3c6k_A Spermine synthase; sper 26.6 1.9E+02 0.0063 31.2 8.9 31 726-756 264-294 (381)
57 1sur_A PAPS reductase; assimil 26.2 67 0.0023 31.3 5.1 51 656-717 46-96 (215)
58 3k32_A Uncharacterized protein 21.7 4.7E+02 0.016 24.9 10.2 34 655-692 7-40 (203)
59 4b4t_W RPN10, 26S proteasome r 21.1 1E+02 0.0036 31.5 5.4 37 655-692 107-146 (268)
60 2k4m_A TR8_protein, UPF0146 pr 20.9 97 0.0033 28.9 4.6 37 576-612 90-126 (153)
61 1nu0_A Hypothetical protein YQ 20.1 1.5E+02 0.0051 27.0 5.7 67 576-643 27-97 (138)
62 1vhx_A Putative holliday junct 20.0 1.6E+02 0.0055 27.1 6.0 57 585-642 40-98 (150)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.90 E-value=6.5e-24 Score=232.56 Aligned_cols=303 Identities=9% Similarity=0.071 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccChhHH----hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHH
Q 044119 133 LLVNTMSIMGGIYFIFIVTLKMDKARI----LKTVR--NGWSVSVTCLVVPFTISSFLTSLLHSYIPGVNKGPFLYFFSV 206 (816)
Q Consensus 133 ~~l~~la~iGl~~llF~~Gle~d~~~l----~~~~~--~~~~ia~~~~l~p~~lg~~~~~~l~~~~~~~~~~~~~l~lg~ 206 (816)
+....+.+-.+.+|+|.+|+|+|.+.+ ++.+| .....++.|+++|++++.. +.... ..+.....
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~~~~------~~~~~gw~ 127 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FNYAD------PITREGWA 127 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GCCSS------TTHHHHTS
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----HhcCC------hhhhhhhH
Confidence 345667788899999999999999877 55555 3788899999999988422 21111 33556777
Q ss_pred HhccCcHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044119 207 TLAKPFFPVIAHAMNELNL-LTSELGQLAISCSILSELLSWMNLILAMIFKANNHLLKTEITFCALAFFMFFIVRPAVKW 285 (816)
Q Consensus 207 ~ls~Ts~~vv~~iL~el~l-l~s~~g~l~ls~a~i~Di~~~vll~~~~~~~~~~~~l~~~l~~v~~~~~~~~v~r~~~~~ 285 (816)
+.+.|+.+....++..++. .++..++.+++.|++||+.+|+++.+... ++....+... .+++++.. +
T Consensus 128 ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt--~~~~~~~l~~-~~~~~~~~---------~ 195 (388)
T 1zcd_A 128 IPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT--NDLSMASLGV-AAVAIAVL---------A 195 (388)
T ss_dssp SSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC--CCCCHHHHHH-HHHHHHHH---------H
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHH-HHHHHHHH---------H
Confidence 7888999999999999865 46667799999999999999999966533 2211212111 11111111 2
Q ss_pred HHHHcCCCCCchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhhhccCCC----CchhHHHHHhHHHHHHHHHHHH-H
Q 044119 286 IIRTTPEGKAVKEIYMVAMLLLPGITGALSDATGLNFMSGAVLTGLVVPAGP----PLGSAVVKKSEIIMENIFMPFF-Y 360 (816)
Q Consensus 286 l~~r~~~~~~~~e~~~~~vl~~~~~~~~lae~lG~~~ilGaflaGL~i~~~~----~~~~~l~~kle~~~~~~~~Plf-F 360 (816)
+.+|.. +++...+.++. +.+++.++..|+|+++|+|++|+++|..+ +..+++++++++++..+++|+| |
T Consensus 196 ~l~r~~----v~~~~~y~~lg--l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaF 269 (388)
T 1zcd_A 196 VLNLCG----ARRTGVYILVG--VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAF 269 (388)
T ss_dssp HHHHTT----CCCTHHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHhc----chhHHHHHHHH--HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223321 11222333332 24456779999999999999999999853 3467899999999999999999 9
Q ss_pred HHhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHHhHHHHHHHHHHHH
Q 044119 361 IHIGQLFNVYSITNWKAFAILQIIILAAYFARVAAIFLSLIFY----------KISIRNAILFGLILNIKGVIELLLLTE 430 (816)
Q Consensus 361 ~~~G~~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~l~lgl~m~~kG~v~l~~~~~ 430 (816)
+..|+++|...+..... .....+++..+++|++|++..++.. |++|+|...+|++++.+++++++++++
T Consensus 270 anaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~l 348 (388)
T 1zcd_A 270 ANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASL 348 (388)
T ss_dssp HHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHH
T ss_pred HhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999754311111 1123444556889999966666666 999999999999999999999999999
Q ss_pred hhhccc--cCcchhhHHHHHHHHHHHhHhHHHHhhc
Q 044119 431 WRTHKY--VDDQTVTTIMLSHTAVTAIVIPLISMYY 464 (816)
Q Consensus 431 ~~~~~~--i~~~~f~~lvl~vll~t~i~~pli~~ly 464 (816)
+++.+. +.++.+..+++++++++.+.+.++++.+
T Consensus 349 af~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 349 AFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred hccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 998875 3566788888888885555555555544
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.54 E-value=2.5e-13 Score=145.17 Aligned_cols=256 Identities=11% Similarity=0.071 Sum_probs=171.5
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCcc
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCV 572 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~v 572 (816)
-|||+|+...++....++.+..++... ...++++|+++ + .+. ....++..+.++. .++
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~-~---------~~~------~~~l~~~~~~~~~----~~~ 65 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVT--QSHLHLLVCEK-R---------RDH------SAALNDLAQELRE----EGY 65 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHH--CCEEEEEEECS-S---------SCC------HHHHHHHHHHHHH----TTC
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhc--CCeEEEEEeeC-c---------HHH------HHHHHHHHHHHhh----CCC
Confidence 489999999888888888888887653 35899999986 1 100 0111222222221 346
Q ss_pred ccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEEecCCCCCCCCCC
Q 044119 573 SLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGILVDSGLPRSLSST 651 (816)
Q Consensus 573 ~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIlVdrg~~~~~~~~ 651 (816)
. ++...... .+..+.|++.|+++++|+|++|+|++...+ +. ++++.+++++++||+|-+ |..+.. .
T Consensus 66 ~--~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~---~~~~gs~~~~vl~~~~~PVlv-v~~~~~-----~ 132 (290)
T 3mt0_A 66 S--VSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLK---KAILTPDDWKLLRFAPCPVLM-TKTARP-----W 132 (290)
T ss_dssp C--EEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTS---TTSCCHHHHHHHHHCSSCEEE-ECCCSC-----S
T ss_pred e--EEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchh---hcccCHHHHHHHhcCCCCEEE-ecCCCC-----C
Confidence 6 66666544 678999999999999999999999876432 33 899999999999999844 432221 1
Q ss_pred CcceEEEEeccCCcc-------hHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC-------chhhhhhhHHHHHHHHHHhc
Q 044119 652 HFSYDVAVFFLGGAD-------DREVMALVSRMAGHPSLTVTVFKIDFKGNQA-------ENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 652 ~~~~~i~v~f~GG~d-------dreAL~~a~rma~~~~v~ltvvr~~~~~~~~-------~~~~~~~~d~~~l~~~~~~~ 717 (816)
...+|++++-|.++ .+.|+++|.++++..+.+++++|+.++.... ..+..++..++.++++.+++
T Consensus 133 -~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 211 (290)
T 3mt0_A 133 -TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEY 211 (290)
T ss_dssp -TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHc
Confidence 35699999999998 7999999999999999999999998642211 01111223345666776665
Q ss_pred CCCCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEE
Q 044119 718 AGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVV 797 (816)
Q Consensus 718 ~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvv 797 (816)
... .+.+ +....+..+.+....+ ..++||+|+|+++. + |+ +.--+|...+.+.. .++++||||
T Consensus 212 g~~-~~~~-~v~~g~~~~~I~~~a~-~~~~dLiVmG~~g~--~----~~----~~~~~Gsv~~~vl~----~~~~pVLvv 274 (290)
T 3mt0_A 212 GFS-DEQL-HIEEGPADVLIPRTAQ-KLDAVVTVIGTVAR--T----GL----SGALIGNTAEVVLD----TLESDVLVL 274 (290)
T ss_dssp TCC-TTTE-EEEESCHHHHHHHHHH-HHTCSEEEEECCSS--C----CG----GGCCSCHHHHHHHT----TCSSEEEEE
T ss_pred CCC-cceE-EEeccCHHHHHHHHHH-hcCCCEEEECCCCC--c----CC----cceecchHHHHHHh----cCCCCEEEE
Confidence 321 1111 2223344444333333 25699999998863 2 12 22247999999986 468899999
Q ss_pred eeec
Q 044119 798 HCTE 801 (816)
Q Consensus 798 qq~~ 801 (816)
+.+.
T Consensus 275 ~~~~ 278 (290)
T 3mt0_A 275 KPDD 278 (290)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.49 E-value=7e-13 Score=143.38 Aligned_cols=276 Identities=10% Similarity=-0.001 Sum_probs=173.4
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhh--cccccchhHHHHHHhcccccC
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRR--RLKENSTDRIMRAVTNQTKSS 570 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~--~~~~~~~~~i~~af~~~~~~~ 570 (816)
-|||+|+...++....++.+..++... ...++++|+++-..-..+.....+..+. .......++.++.+..+....
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 85 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRN--GGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEA 85 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHH--CCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHc--CCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 489999999999888888887776543 3689999997632110000000110000 001112233333322211123
Q ss_pred ccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEEecCCCCCCCC
Q 044119 571 CVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGILVDSGLPRSLS 649 (816)
Q Consensus 571 ~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIlVdrg~~~~~~ 649 (816)
++. ++...... .+..++|++.|+++++||||+|+|++...+ +. ++++..+|++++||+|-+ |..+..
T Consensus 86 ~v~--~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~---~~~~Gs~~~~vl~~~~~PVlv-v~~~~~---- 153 (319)
T 3olq_A 86 GIQ--IDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLG---SLIFTPLDWQLLRKCPAPVWM-VKDKEW---- 153 (319)
T ss_dssp TCC--EEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CC---SCBCCHHHHHHHHHCSSCEEE-EESSCC----
T ss_pred CCe--EEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhh---cccccccHHHHHhcCCCCEEE-ecCccc----
Confidence 567 77666644 688999999999999999999999876432 33 899999999999999854 443221
Q ss_pred CCCcceEEEEeccCCcc-------hHHHHHHHHHHhcCC--CeEEEEEEEEeCCCCC--------c-h---hhhhhhHHH
Q 044119 650 STHFSYDVAVFFLGGAD-------DREVMALVSRMAGHP--SLTVTVFKIDFKGNQA--------E-N---ECERQLDEY 708 (816)
Q Consensus 650 ~~~~~~~i~v~f~GG~d-------dreAL~~a~rma~~~--~v~ltvvr~~~~~~~~--------~-~---~~~~~~d~~ 708 (816)
....+|++++-|.++ .+.|+++|.++++.. +.+++++|+....... + + +..++.-++
T Consensus 154 --~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (319)
T 3olq_A 154 --PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLI 231 (319)
T ss_dssp --CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHH
T ss_pred --ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHH
Confidence 124699999999995 499999999999876 9999999998653211 0 0 111222245
Q ss_pred HHHHHHHhcCCCCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCC
Q 044119 709 VMNEFRERNAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFY 788 (816)
Q Consensus 709 ~l~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~ 788 (816)
.++++.+++... .+.+ +....+..+.+....+ ..+.||+|+|+++. + |+ +.--+|.+.+.+..
T Consensus 232 ~l~~~~~~~~~~-~~~~-~v~~g~~~~~I~~~a~-~~~~dLiV~G~~g~--~----~~----~~~~~Gsv~~~vl~---- 294 (319)
T 3olq_A 232 AMKELRQKFSIP-EEKT-HVKEGLPEQVIPQVCE-ELNAGIVVLGILGR--T----GL----SAAFLGNTAEQLID---- 294 (319)
T ss_dssp HHHHHHHHTTCC-GGGE-EEEESCHHHHHHHHHH-HTTEEEEEEECCSC--C----ST----HHHHHHHHHHHHHT----
T ss_pred HHHHHHHHhCCC-cccE-EEecCCcHHHHHHHHH-HhCCCEEEEeccCc--c----CC----ccccccHHHHHHHh----
Confidence 667777665332 2221 2223344443332222 24789999999753 2 12 11237999999885
Q ss_pred CCcccEEEEeeec
Q 044119 789 GGTMSVLVVHCTE 801 (816)
Q Consensus 789 ~~~~SVLvvqq~~ 801 (816)
.++++||||+.+.
T Consensus 295 ~~~~pVLvv~~~~ 307 (319)
T 3olq_A 295 HIKCDLLAIKPDG 307 (319)
T ss_dssp TCCSEEEEECCTT
T ss_pred hCCCCEEEECCCC
Confidence 4688999998765
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.48 E-value=1.9e-13 Score=146.44 Aligned_cols=264 Identities=8% Similarity=0.058 Sum_probs=167.0
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccc--cccchhhhhcccccchhHHHHHHhcccccC
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESL--SAPYDAQRRRLKENSTDRIMRAVTNQTKSS 570 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~--~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 570 (816)
-|||+|+...++....++.+..++... ..+++++|+++.+...... ....+..+ ......+..++.+.......
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 98 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVG--VEEIGVLFVINLTKLSTVSGGIDIDHYID--EMSEKAEEVLPEVAQKIEAA 98 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTT--CCEEEEECCEECTTC-----CCCTTHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCcccccccccccHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 489999999998888888888776543 4789999999865422110 00001000 11123344444333311113
Q ss_pred ccccceee-eEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEEecCCCCCCC
Q 044119 571 CVSLTSQP-FKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGILVDSGLPRSL 648 (816)
Q Consensus 571 ~v~~~v~~-~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIlVdrg~~~~~ 648 (816)
++. ++. ...-. .+..+.| .|+++++|+|++|.|++... .+. ++++.++|++++||+|-+ |.++...
T Consensus 99 g~~--~~~~~v~~~--g~~~~~I--~a~~~~~DliV~G~~g~~~~---~~~~~Gs~~~~vl~~~~~PVlv-v~~~~~~-- 166 (294)
T 3loq_A 99 GIK--AEVIKPFPA--GDPVVEI--IKASENYSFIAMGSRGASKF---KKILLGSVSEGVLHDSKVPVYI-FKHDMVV-- 166 (294)
T ss_dssp TCE--EEECSSCCE--ECHHHHH--HHHHTTSSEEEEECCCCCHH---HHHHHCCHHHHHHHHCSSCEEE-ECCCTTT--
T ss_pred CCC--cceeEeecc--CChhHhe--eeccCCCCEEEEcCCCCccc---cceeeccHHHHHHhcCCCCEEE-ecCcccc--
Confidence 456 555 22212 5778888 99999999999999987642 234 789999999999999844 4443210
Q ss_pred CCCCcceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEE
Q 044119 649 SSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREM 728 (816)
Q Consensus 649 ~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~ 728 (816)
.....+|++++-|.+++++|+++|.++++..+.+++++++.++.. .++.+ +++.+.+... +-++.+ +.
T Consensus 167 --~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----~~~~l-~~~~~~l~~~---~~~~~~-~~ 234 (294)
T 3loq_A 167 --NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----KTADL-RVMEEVIGAE---GIEVHV-HI 234 (294)
T ss_dssp --TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----CHHHH-HHHHHHHHHT---TCCEEE-EE
T ss_pred --CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----HHHHH-HHHHHHHHHc---CCcEEE-EE
Confidence 123469999999999999999999999999999999999876422 11111 2233333322 122332 22
Q ss_pred EeCChHHHHHHHHhhh--cCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEeeec
Q 044119 729 MVNDSTELMSSIRLIE--NIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCTE 801 (816)
Q Consensus 729 ~v~~~~~~~~~i~~~~--~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq~~ 801 (816)
...+..+ .|.+.+ .++||+|+|+++. +. + +.--+|...+.+.. .++++||||++..
T Consensus 235 ~~g~~~~---~I~~~a~~~~~dLlV~G~~~~--~~----~----~~~~~Gs~~~~vl~----~~~~pvLvv~~~~ 292 (294)
T 3loq_A 235 ESGTPHK---AILAKREEINATTIFMGSRGA--GS----V----MTMILGSTSESVIR----RSPVPVFVCKRGD 292 (294)
T ss_dssp ECSCHHH---HHHHHHHHTTCSEEEEECCCC--SC----H----HHHHHHCHHHHHHH----HCSSCEEEECSCT
T ss_pred ecCCHHH---HHHHHHHhcCcCEEEEeCCCC--CC----c----cceeeCcHHHHHHh----cCCCCEEEECCCC
Confidence 2223333 333332 4799999999863 21 1 11236888888885 3678999998763
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.43 E-value=2e-12 Score=139.40 Aligned_cols=273 Identities=13% Similarity=0.117 Sum_probs=168.3
Q ss_pred CcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCc-c-ccccchhhhhcccccchhHHHHHHhc--cc
Q 044119 492 ELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAE-S-LSAPYDAQRRRLKENSTDRIMRAVTN--QT 567 (816)
Q Consensus 492 e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s-~-~~~~~~~~~~~~~~~~~~~i~~af~~--~~ 567 (816)
--|||+|+...++....++.+..++... ...++++|+++ +.... + ...+.+..+. .....++.++.+.. +.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 93 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVS-PEVATWLEVPLPPGVLRW--QQDHGRHLIDDALKVVEQ 93 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECC-CCCCCTTCCCCCHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEec-CcccccccCCCCchhhHH--HHHHHHHHHHHHHHHHHH
Confidence 4689999999988888888877776533 35799999987 32211 0 0001111000 11123334443222 11
Q ss_pred c---cCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEEecCC
Q 044119 568 K---SSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGILVDSG 643 (816)
Q Consensus 568 ~---~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIlVdrg 643 (816)
. ..++. ++..... .+..+.|++.|+ ++|+||||.|++.... +. ++++.++|++++||+|-+ |...
T Consensus 94 ~~~~~~~~~--~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~---~~~~Gs~~~~vl~~~~~PVlv-v~~~ 162 (309)
T 3cis_A 94 ASLRAGPPT--VHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWP---GRLLGSVSSGLLRHAHCPVVI-IHDE 162 (309)
T ss_dssp HCSSSCCSC--EEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCT---TCCSCHHHHHHHHHCSSCEEE-ECTT
T ss_pred hcccCCCce--EEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCcccc---ccccCcHHHHHHHhCCCCEEE-EcCC
Confidence 1 12466 6655442 578999999996 7999999999876432 33 899999999999999854 4332
Q ss_pred CCCCCCCCCcceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC-----chhhhhhhHHHHHHHHHHhcC
Q 044119 644 LPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQA-----ENECERQLDEYVMNEFRERNA 718 (816)
Q Consensus 644 ~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~-----~~~~~~~~d~~~l~~~~~~~~ 718 (816)
.... ......+|++++-|.++++.|+++|.++++..+.+++++++..+.... +.+..++..++.++++.....
T Consensus 163 ~~~~--~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 240 (309)
T 3cis_A 163 DSVM--PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQ 240 (309)
T ss_dssp CCCS--CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccC--CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 2100 012245899999999999999999999999999999999987642210 001111112233444333221
Q ss_pred ---CCCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEE
Q 044119 719 ---GNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVL 795 (816)
Q Consensus 719 ---~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVL 795 (816)
.+-++.+ . +..|. ....|.+.++++||+|+|+++. + ++ +.--+|...+.+... ++++||
T Consensus 241 ~~~~~~~~~~--~-~~~g~-~~~~I~~~a~~adliV~G~~~~--~----~~----~~~l~Gsv~~~vl~~----~~~pVl 302 (309)
T 3cis_A 241 ERYPNVAITR--V-VVRDQ-PARQLVQRSEEAQLVVVGSRGR--G----GY----AGMLVGSVGETVAQL----ARTPVI 302 (309)
T ss_dssp HHCTTSCEEE--E-EESSC-HHHHHHHHHTTCSEEEEESSCS--S----CC----TTCSSCHHHHHHHHH----CSSCEE
T ss_pred hhCCCCcEEE--E-EEcCC-HHHHHHHhhCCCCEEEECCCCC--C----Cc----cccccCcHHHHHHhc----CCCCEE
Confidence 1223433 2 22332 3334444455899999999853 2 12 223479999988853 578999
Q ss_pred EEeee
Q 044119 796 VVHCT 800 (816)
Q Consensus 796 vvqq~ 800 (816)
||+.+
T Consensus 303 vv~~~ 307 (309)
T 3cis_A 303 VARES 307 (309)
T ss_dssp EECC-
T ss_pred EeCCC
Confidence 99753
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.37 E-value=5e-12 Score=133.22 Aligned_cols=255 Identities=12% Similarity=0.042 Sum_probs=161.5
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCcc--cc---ccchh---hh--hcccccchhHHHHHH
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAES--LS---APYDA---QR--RRLKENSTDRIMRAV 563 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~--~~---~~~~~---~~--~~~~~~~~~~i~~af 563 (816)
|||+|+...++....++.+..++... ..+++++|+++......+ .- ...+. .+ ........++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999988888888887776543 357999999875321000 00 00000 00 000111233444444
Q ss_pred hcccccCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCC-Ccchhhhh-hHHHHHHHhhcCCCcEEEEec
Q 044119 564 TNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGL-EFQEIETC-LHQLNLNIQAYAQCTIGILVD 641 (816)
Q Consensus 564 ~~~~~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~-~~~~~~~~-~~~~n~~vl~~ApCsVgIlVd 641 (816)
.......++. ++..... .+..+.|++. ++++|+|+||.|++. ... +. ++++.++|++++||+|-+ |.
T Consensus 80 ~~~~~~~g~~--~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~---~~~~Gs~~~~v~~~a~~PVlv-v~ 148 (268)
T 3ab8_A 80 RQSALAAGVA--VEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDG---FGGLGSTADRVLRASPVPVLL-AP 148 (268)
T ss_dssp HHHHHHTTCC--EEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTT---CCSCCHHHHHHHHHCSSCEEE-EC
T ss_pred HHHHHhCCCC--eEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCcccc---ccccchhHHHHHHhCCCCEEE-EC
Confidence 3311123566 6665553 4789999998 889999999999865 432 33 899999999999999844 44
Q ss_pred CCCCCCCCCCCcceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCC
Q 044119 642 SGLPRSLSSTHFSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNA 721 (816)
Q Consensus 642 rg~~~~~~~~~~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~ 721 (816)
++.. ...+|++++-|.++++.|+++|.++++..+.+++++|+..+. ++.++.+ ++..+.+... +-
T Consensus 149 ~~~~-------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~----~~~~~~l-~~~~~~l~~~---~~ 213 (268)
T 3ab8_A 149 GEPV-------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP----ARAEAWA-LEAEAYLRDH---GV 213 (268)
T ss_dssp SSCC-------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH----HHHHHHH-HHHHHHHHHT---TC
T ss_pred CCCC-------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH----HHHHHHH-HHHHHHHHHc---CC
Confidence 3221 235899999999999999999999999889999999987531 1111111 2223333221 12
Q ss_pred ceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 722 CVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 722 ~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
++.+ . +.++. ..+.|.+.++++||+++|+ |+ +.--+|...+.+... ++++||||+
T Consensus 214 ~~~~--~-~~~g~-~~~~i~~~a~~~dliV~G~----------~~----~~~~~Gs~~~~vl~~----~~~pvlvv~ 268 (268)
T 3ab8_A 214 EASA--L-VLGGD-AADHLLRLQGPGDLLALGA----------PV----RRLVFGSTAERVIRN----AQGPVLTAR 268 (268)
T ss_dssp CEEE--E-EECSC-HHHHHHHHCCTTEEEEEEC----------CC----SCCSSCCHHHHHHHH----CSSCEEEEC
T ss_pred ceEE--E-EeCCC-hHHHHHHHHHhCCEEEECC----------cc----cccEeccHHHHHHhc----CCCCEEEeC
Confidence 3333 2 22342 3344555556669999998 22 223478888888863 678999984
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.31 E-value=2.1e-06 Score=80.87 Aligned_cols=134 Identities=8% Similarity=0.017 Sum_probs=90.5
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccc--cchhhhhcccccchhHHHHHHhcccccC
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSA--PYDAQRRRLKENSTDRIMRAVTNQTKSS 570 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~--~~~~~~~~~~~~~~~~i~~af~~~~~~~ 570 (816)
-|||+|+...++....++.+..++... ...++++|+++.+........ ..+.. .......++.++.+.......
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 81 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH--QANLTALYVVDDSAYHTPALDPVLSELL--DAEAAHAKDAMRQRQQFVATT 81 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEECCCCCCGGGHHHHHHHH--HHHHHHHHHHHHHHHHHHTTS
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccHHHH--HHHHHHHHHHHHHHHHHHHhc
Confidence 479999999888888888887776542 468999999987643321110 00000 011123344455444311123
Q ss_pred cc-ccceeeeEEecCCCChhHHHHH-HHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 571 CV-SLTSQPFKIIAPYHTMHESICK-LAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 571 ~v-~~~v~~~~~vsp~~~m~~~I~~-~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
++ . ++...... +..+.|++ .|++.++|+|+||.|++.... +. ++++.++|++++||+|-|
T Consensus 82 g~~~--~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~---~~~~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 82 SAPN--LKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPH---RVAVGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp SCCC--CEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTT---TCSSCHHHHHHHHHCSSEEEE
T ss_pred CCcc--eEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcc---eEEEcchHHHHhccCCCCEEE
Confidence 45 6 66665544 68999999 999999999999999876532 34 899999999999999844
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.31 E-value=6.4e-06 Score=77.55 Aligned_cols=129 Identities=10% Similarity=0.091 Sum_probs=83.9
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCc----------hhhhhhhHHHHHHHHHHhcCCC-C-
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAE----------NECERQLDEYVMNEFRERNAGN-A- 721 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~----------~~~~~~~d~~~l~~~~~~~~~~-~- 721 (816)
..+|++++-|.++.+.|+++|.++|++.+.+++++|+.++..... .+..++..++.++++.+..... -
T Consensus 5 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 84 (146)
T 3s3t_A 5 YTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSAP 84 (146)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 468999999999999999999999999999999999987532211 0112233345666666654221 1
Q ss_pred ceEEEEEEeCChHHHHHH-HHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 722 CVVCREMMVNDSTELMSS-IRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 722 ~v~y~e~~v~~~~~~~~~-i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
++.+. ....+..+.+.. ..+ +.++||+|+|+++. + ++ +.--+|...+.+... ++++||||+
T Consensus 85 ~~~~~-~~~g~~~~~I~~~~a~-~~~~dliV~G~~~~--~----~~----~~~~~Gs~~~~vl~~----~~~pVlvV~ 146 (146)
T 3s3t_A 85 NLKTE-ISYGIPKHTIEDYAKQ-HPEIDLIVLGATGT--N----SP----HRVAVGSTTSYVVDH----APCNVIVIR 146 (146)
T ss_dssp CCEEE-EEEECHHHHHHHHHHH-STTCCEEEEESCCS--S----CT----TTCSSCHHHHHHHHH----CSSEEEEEC
T ss_pred ceEEE-EecCChHHHHHHHHHh-hcCCCEEEECCCCC--C----Cc----ceEEEcchHHHHhcc----CCCCEEEeC
Confidence 33322 222333333222 222 26799999998853 2 11 223479999999863 678999985
No 9
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.26 E-value=7.6e-06 Score=78.63 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=88.0
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeec-----CCCccc--c--c-cch---hhhh-cccccchhH
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELV-----GRAESL--S--A-PYD---AQRR-RLKENSTDR 558 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~-----~r~s~~--~--~-~~~---~~~~-~~~~~~~~~ 558 (816)
-|||+|+...++....++.+..++... ..+++++|+++.. ...... . . +.+ ..+. .......++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLK--AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSS--CCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 489999999888888888888887653 4789999998853 100000 0 0 110 0000 001112334
Q ss_pred HHHHHhcccccCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEE
Q 044119 559 IMRAVTNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIG 637 (816)
Q Consensus 559 i~~af~~~~~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVg 637 (816)
.++.+.......++. ++..+.. .+..+.|++.|++.++|+|+||.|++.... +. ++++.++|++++||+|-
T Consensus 84 ~l~~~~~~~~~~g~~--~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~---~~~~GSv~~~vl~~~~~pVl 155 (162)
T 1mjh_A 84 KMENIKKELEDVGFK--VKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLK---EILLGSVTENVIKKSNKPVL 155 (162)
T ss_dssp HHHHHHHHHHHTTCE--EEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCT---TCSSCHHHHHHHHHCCSCEE
T ss_pred HHHHHHHHHHHcCCc--eEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCcc---ceEecchHHHHHHhCCCCEE
Confidence 444333311113466 6655443 478999999999999999999999876532 34 89999999999999985
Q ss_pred E
Q 044119 638 I 638 (816)
Q Consensus 638 I 638 (816)
|
T Consensus 156 v 156 (162)
T 1mjh_A 156 V 156 (162)
T ss_dssp E
T ss_pred E
Confidence 4
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.22 E-value=2.3e-06 Score=80.70 Aligned_cols=135 Identities=12% Similarity=0.110 Sum_probs=87.1
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccc--cccchhhhh--cccccchhHHHHHHhccccc
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESL--SAPYDAQRR--RLKENSTDRIMRAVTNQTKS 569 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~--~~~~~~~~~--~~~~~~~~~i~~af~~~~~~ 569 (816)
|||+|+...++....++.+..++... ..+++++|+++.+...... ..+.+..+. .......++.++.+......
T Consensus 4 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 4 RIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999888888888877776543 3689999998854310000 000110000 00112334445544431111
Q ss_pred Cccccce---eeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 570 SCVSLTS---QPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 570 ~~v~~~v---~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
.++. + +..... .+..+.|++.|++.++|+|+||.|++.... +. ++++.++|++++||+|-|
T Consensus 82 ~g~~--~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~---~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 82 LGVP--ADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDK---SLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp TTCC--GGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCS---CCCCCHHHHHHHHHCSSCEEE
T ss_pred cCCC--ccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCcccc---ceeeccHHHHHHhhCCCCEEE
Confidence 2455 5 544433 478999999999999999999999876532 34 899999999999999843
No 11
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.21 E-value=8.5e-06 Score=76.38 Aligned_cols=127 Identities=15% Similarity=0.070 Sum_probs=79.9
Q ss_pred eEEEEeccCCcc--hHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC------------chhhhhhhHHHHHHHHHHhcCCC
Q 044119 655 YDVAVFFLGGAD--DREVMALVSRMAGHPSLTVTVFKIDFKGNQA------------ENECERQLDEYVMNEFRERNAGN 720 (816)
Q Consensus 655 ~~i~v~f~GG~d--dreAL~~a~rma~~~~v~ltvvr~~~~~~~~------------~~~~~~~~d~~~l~~~~~~~~~~ 720 (816)
.+|++++-|.++ .+.|+++|.++|++.+.+++++|+.++.... ..+...+.-.+.++++.++....
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999 9999999999999999999999998752110 00111111223344444443222
Q ss_pred -CceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 721 -ACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 721 -~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
.++.+. ....+..+.+....+ +.++||+|+|+++ +. + +.--+|...+.+... ++++||||+
T Consensus 82 ~~~v~~~-~~~g~~~~~I~~~a~-~~~~dliV~G~~~---~~----~----~~~~~Gs~~~~v~~~----~~~pVlvv~ 143 (143)
T 3fdx_A 82 EDRMHFH-VAEGSPKDKILALAK-SLPADLVIIASHR---PD----I----TTYLLGSNAAAVVRH----AECSVLVVR 143 (143)
T ss_dssp GGGEEEE-EEESCHHHHHHHHHH-HTTCSEEEEESSC---TT----C----CSCSSCHHHHHHHHH----CSSEEEEEC
T ss_pred CCceEEE-EEecChHHHHHHHHH-HhCCCEEEEeCCC---CC----C----eeeeeccHHHHHHHh----CCCCEEEeC
Confidence 233332 223344443332222 2479999999984 21 1 233579999999863 678999984
No 12
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.18 E-value=1.6e-05 Score=74.02 Aligned_cols=125 Identities=12% Similarity=0.078 Sum_probs=80.7
Q ss_pred eEEEEeccCCcchHHHHHHHHHHh-cCCCeEEEEEEEEeCCCCCch---------hhhh-hhHHHHHHHHHHhcCC-CCc
Q 044119 655 YDVAVFFLGGADDREVMALVSRMA-GHPSLTVTVFKIDFKGNQAEN---------ECER-QLDEYVMNEFRERNAG-NAC 722 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~~~~~---------~~~~-~~d~~~l~~~~~~~~~-~~~ 722 (816)
.+|++++-|.++.+.|+++|.++| +..+.+++++|+.++...... +..+ +..++.++++.+.... +-+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 589999999999999999999999 999999999999875332110 0111 2334556666655422 223
Q ss_pred eEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 723 VVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 723 v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
+.+ +....+..+ .|.+.++++||+|+|+++. + .|.+. - |...+.+... ++++||||.
T Consensus 82 ~~~-~v~~g~~~~---~I~~~a~~~dliV~G~~~~--~-------~~~~~-~-Gs~~~~vl~~----~~~pVlvv~ 138 (138)
T 3idf_A 82 PFV-VIKEGEPVE---MVLEEAKDYNLLIIGSSEN--S-------FLNKI-F-ASHQDDFIQK----APIPVLIVK 138 (138)
T ss_dssp CEE-EEEESCHHH---HHHHHHTTCSEEEEECCTT--S-------TTSSC-C-CCTTCHHHHH----CSSCEEEEC
T ss_pred eEE-EEecCChHH---HHHHHHhcCCEEEEeCCCc--c-------hHHHH-h-CcHHHHHHhc----CCCCEEEeC
Confidence 332 222233333 3333344999999998853 2 11222 2 8888888863 678999984
No 13
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.18 E-value=1.2e-05 Score=77.92 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=87.6
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccc-ccc----------chhhhhcccccchhHHHH
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESL-SAP----------YDAQRRRLKENSTDRIMR 561 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~-~~~----------~~~~~~~~~~~~~~~i~~ 561 (816)
-|||+|+...++....++.+..++... ...++++|+++........ -.+ .+..+ ......++.++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 81 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKME--VGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKE--KLKEEASRKLQ 81 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSC--CSEEEEEEEEETTGGGCCC------------CCTTSHH--HHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccccccccccHHHHHH--HHHHHHHHHHH
Confidence 379999999988888899888887653 4789999998743211000 000 00000 01112334444
Q ss_pred HHhcccccCccccceee--eEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 562 AVTNQTKSSCVSLTSQP--FKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 562 af~~~~~~~~v~~~v~~--~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
.+.......++. ++. .... .+..+.|++.|++.++|+||||.|++... .+. ++++.++|++++||+|-|
T Consensus 82 ~~~~~~~~~g~~--~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~---~~~~~Gsv~~~vl~~~~~PVlv 153 (170)
T 2dum_A 82 EKAEEVKRAFRA--KNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSL---SHEFLGSTVMRVLRKTKKPVLI 153 (170)
T ss_dssp HHHHHHHHHTTC--SEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC-----TTCCCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHcCCc--eeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcc---ccceechHHHHHHHhCCCCEEE
Confidence 333311112455 655 4333 47899999999999999999999987643 234 899999999999999855
Q ss_pred E
Q 044119 639 L 639 (816)
Q Consensus 639 l 639 (816)
.
T Consensus 154 v 154 (170)
T 2dum_A 154 I 154 (170)
T ss_dssp E
T ss_pred E
Confidence 4
No 14
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.16 E-value=3e-06 Score=81.05 Aligned_cols=136 Identities=10% Similarity=0.049 Sum_probs=87.8
Q ss_pred CcEEEEeec--CCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhccccc
Q 044119 492 ELRILCGIH--HEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKS 569 (816)
Q Consensus 492 e~riLv~v~--~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 569 (816)
--|||+|+. ..++....++.+..++... ..+++++|+++............+..+ ......++.++.+......
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 90 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDY--DVPLGICSVLESEDINIFDSLTPSKIQ--AKRKHVEDVVAEYVQLAEQ 90 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTTCCCSSHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCccccccCCHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 348999999 8888888888877776542 367999999986542111000111100 1112334444444331111
Q ss_pred Ccc-ccceeeeEEecCCCChhHHHHHH-HHhcCCCEEEEcCCCCCCcchhhhhhHHHHHHHhhcCCCcEEE
Q 044119 570 SCV-SLTSQPFKIIAPYHTMHESICKL-AEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 570 ~~v-~~~v~~~~~vsp~~~m~~~I~~~-A~e~~~~liilp~h~~~~~~~~~~~~~~~n~~vl~~ApCsVgI 638 (816)
.++ . ++.....+ .+..+.|++. |++.++|+|+||.|++...+ .-++++.++|++++||+|-|
T Consensus 91 ~g~~~--~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~---~~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 91 RGVNQ--VEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS---KIAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HTCSS--EEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS---SSCSCHHHHHHHHCSSEEEE
T ss_pred cCCCc--eEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc---eeecchHHHHHHhCCCCEEE
Confidence 233 4 55555553 5889999999 99999999999999876532 13899999999999999844
No 15
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.15 E-value=2e-05 Score=76.36 Aligned_cols=133 Identities=10% Similarity=-0.021 Sum_probs=84.0
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCC----------------Cc---hhhhhhhHHHHHHHHH
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQ----------------AE---NECERQLDEYVMNEFR 714 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~----------------~~---~~~~~~~d~~~l~~~~ 714 (816)
..+|++++-|.++.+.|+++|.++|+..+.+++++|++.+... +. .+..++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999864211 00 0111222345566665
Q ss_pred HhcC-CCCceEE-EEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcc
Q 044119 715 ERNA-GNACVVC-REMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTM 792 (816)
Q Consensus 715 ~~~~-~~~~v~y-~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~ 792 (816)
+... .+-++.. ......+..+.+....+ +.++||+|+|+++. +. + +.--+|.+.+.+... +++
T Consensus 85 ~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~-~~~~DlIV~G~~g~--~~----~----~~~~~Gsv~~~vl~~----~~~ 149 (170)
T 2dum_A 85 EEVKRAFRAKNVRTIIRFGIPWDEIVKVAE-EENVSLIILPSRGK--LS----L----SHEFLGSTVMRVLRK----TKK 149 (170)
T ss_dssp HHHHHHTTCSEEEEEEEEECHHHHHHHHHH-HTTCSEEEEESCCC--CC----------TTCCCHHHHHHHHH----CSS
T ss_pred HHHHHcCCceeeeeEEecCChHHHHHHHHH-HcCCCEEEECCCCC--Cc----c----ccceechHHHHHHHh----CCC
Confidence 5431 1223433 12223333333222222 24799999998863 21 1 233489999999863 678
Q ss_pred cEEEEeeec
Q 044119 793 SVLVVHCTE 801 (816)
Q Consensus 793 SVLvvqq~~ 801 (816)
+||||+...
T Consensus 150 PVlvv~~~~ 158 (170)
T 2dum_A 150 PVLIIKEVD 158 (170)
T ss_dssp CEEEECCCC
T ss_pred CEEEEccCC
Confidence 999998653
No 16
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.14 E-value=7.2e-06 Score=77.20 Aligned_cols=127 Identities=12% Similarity=0.100 Sum_probs=81.1
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCC----------CCc----hhhhhhhHHHHHHHHHHhcC-C
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGN----------QAE----NECERQLDEYVMNEFRERNA-G 719 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~----------~~~----~~~~~~~d~~~l~~~~~~~~-~ 719 (816)
.+|++++-|.++.+.|+++|.++|++.+.+++++|+.++.. ... .+..++..++.++++.+... .
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL 82 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999986421 000 11122333455666555431 1
Q ss_pred CCce---EEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEE
Q 044119 720 NACV---VCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLV 796 (816)
Q Consensus 720 ~~~v---~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLv 796 (816)
+-++ .+ +....+..+.+....+ +.++||+|+|+++. +. + +.--+|...+.+... ++++|||
T Consensus 83 g~~~~~~~~-~~~~g~~~~~I~~~a~-~~~~dliV~G~~~~--~~----~----~~~~~Gs~~~~vl~~----~~~pVlv 146 (147)
T 3hgm_A 83 GVPADKVRA-FVKGGRPSRTIVRFAR-KRECDLVVIGAQGT--NG----D----KSLLLGSVAQRVAGS----AHCPVLV 146 (147)
T ss_dssp TCCGGGEEE-EEEESCHHHHHHHHHH-HTTCSEEEECSSCT--TC----C----SCCCCCHHHHHHHHH----CSSCEEE
T ss_pred CCCccceEE-EEecCCHHHHHHHHHH-HhCCCEEEEeCCCC--cc----c----cceeeccHHHHHHhh----CCCCEEE
Confidence 1122 32 2233444443322222 24899999998863 21 1 223479999999863 6789998
Q ss_pred E
Q 044119 797 V 797 (816)
Q Consensus 797 v 797 (816)
|
T Consensus 147 V 147 (147)
T 3hgm_A 147 V 147 (147)
T ss_dssp C
T ss_pred C
Confidence 6
No 17
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.13 E-value=1.3e-05 Score=74.79 Aligned_cols=127 Identities=13% Similarity=0.086 Sum_probs=80.8
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCC--C---ch---hhhhhhHHHHHHHHHHhcCCCCceEEE
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQ--A---EN---ECERQLDEYVMNEFRERNAGNACVVCR 726 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~--~---~~---~~~~~~d~~~l~~~~~~~~~~~~v~y~ 726 (816)
.+|++++-|.++++.|+++|.++|+..+.+++++++.++... . .+ +..++.-++.++++.++... .++.+.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~~~ 81 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGV-PKEDAL 81 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCC-CGGGEE
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCC-CccEEE
Confidence 589999999999999999999999999999999998864210 0 00 11122334566666654211 033332
Q ss_pred EEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 727 EMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 727 e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
....+..+.+....+ +.++||+|+|+++. + ++ +.--+|...+.+... ++++||||+
T Consensus 82 -~~~g~~~~~I~~~a~-~~~~dliV~G~~~~--~----~~----~~~~~Gs~~~~vl~~----~~~pVlvv~ 137 (137)
T 2z08_A 82 -LLEGVPAEAILQAAR-AEKADLIVMGTRGL--G----AL----GSLFLGSQSQRVVAE----APCPVLLVR 137 (137)
T ss_dssp -EEESSHHHHHHHHHH-HTTCSEEEEESSCT--T----CC----SCSSSCHHHHHHHHH----CSSCEEEEC
T ss_pred -EEecCHHHHHHHHHH-HcCCCEEEECCCCC--c----hh----hhhhhccHHHHHHhc----CCCCEEEeC
Confidence 223344443322222 24799999998863 2 11 223479999999863 678999984
No 18
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.13 E-value=1.2e-05 Score=76.10 Aligned_cols=129 Identities=12% Similarity=0.105 Sum_probs=81.7
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCC--------------CchhhhhhhHHHHHHHHHHhcCC
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQ--------------AENECERQLDEYVMNEFRERNAG 719 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~--------------~~~~~~~~~d~~~l~~~~~~~~~ 719 (816)
..+|++++-|.++.+.|+++|.++|++.+.+++++|+.++... +..+..++.-++.++++.++...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4589999999999999999999999999999999999864211 01122223334567777666432
Q ss_pred CCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEee
Q 044119 720 NACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHC 799 (816)
Q Consensus 720 ~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq 799 (816)
.. +.. +....+..+.+....+ ..++||+|+|+++. +. | + --+|...+.+... ++++||||+.
T Consensus 86 ~~-~~~-~~~~g~~~~~I~~~a~-~~~~dliV~G~~~~--~~-------~-~-~~~Gs~~~~vl~~----~~~pVlvv~~ 147 (150)
T 3tnj_A 86 DP-AHR-WLVWGEPREEIIRIAE-QENVDLIVVGSHGR--HG-------L-A-LLLGSTANSVLHY----AKCDVLAVRL 147 (150)
T ss_dssp CG-GGE-EEEESCHHHHHHHHHH-HTTCSEEEEEEC-------------------CCCHHHHHHHH----CSSEEEEEEC
T ss_pred Cc-ceE-EEecCCHHHHHHHHHH-HcCCCEEEEecCCC--CC-------c-C-eEecchHHHHHHh----CCCCEEEEeC
Confidence 21 221 2233444443332222 24899999998863 21 1 2 4579999999863 6789999986
Q ss_pred e
Q 044119 800 T 800 (816)
Q Consensus 800 ~ 800 (816)
.
T Consensus 148 ~ 148 (150)
T 3tnj_A 148 R 148 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 19
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.13 E-value=9.3e-06 Score=77.94 Aligned_cols=128 Identities=11% Similarity=0.054 Sum_probs=83.0
Q ss_pred ceEEEEeccC-CcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcC-CCCceEEEEEEe-
Q 044119 654 SYDVAVFFLG-GADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNA-GNACVVCREMMV- 730 (816)
Q Consensus 654 ~~~i~v~f~G-G~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~v~y~e~~v- 730 (816)
..+|++++-| .++.+.|+++|.++|+..+.+++++++.++..... +..++..++.++++.+... ....+.. +..+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~-~~~v~ 101 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEE-HLLVR 101 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEE-EEEES
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceE-EEEec
Confidence 4589999999 99999999999999999999999999987532222 2222233455555555431 1223433 2223
Q ss_pred -CChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 731 -NDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 731 -~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
.+..+.+....+ +.++||+|+|+++. +. + +.--+|.+.+.+... ++++||||+
T Consensus 102 ~G~~~~~I~~~a~-~~~~DLIV~G~~g~--~~----~----~~~~lGSv~~~vl~~----a~~PVLvVr 155 (155)
T 3dlo_A 102 GKEPPDDIVDFAD-EVDAIAIVIGIRKR--SP----T----GKLIFGSVARDVILK----ANKPVICIK 155 (155)
T ss_dssp SSCHHHHHHHHHH-HTTCSEEEEECCEE--CT----T----SCEECCHHHHHHHHH----CSSCEEEEC
T ss_pred CCCHHHHHHHHHH-HcCCCEEEECCCCC--CC----C----CCEEeccHHHHHHHh----CCCCEEEeC
Confidence 333433222222 24799999998853 21 1 223479999999863 678999985
No 20
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.12 E-value=2.1e-05 Score=75.54 Aligned_cols=131 Identities=13% Similarity=0.076 Sum_probs=83.0
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCC-----C--CC--------ch------hh---hhhhHHHH
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKG-----N--QA--------EN------EC---ERQLDEYV 709 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~-----~--~~--------~~------~~---~~~~d~~~ 709 (816)
..+|++++-|.++.+.|+++|.++|+..+.+++++|+.++. . .. .. +. .++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998643 1 00 10 00 11222345
Q ss_pred HHHHHHhcC-CCCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCC
Q 044119 710 MNEFRERNA-GNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFY 788 (816)
Q Consensus 710 l~~~~~~~~-~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~ 788 (816)
++++.+... .+-++.+. ....+..+.+....+ +.++||+|+|+++. + ++ +.--+|.+.+.+...
T Consensus 85 l~~~~~~~~~~g~~~~~~-v~~G~~~~~I~~~a~-~~~~dlIV~G~~g~--~----~~----~~~~~GSv~~~vl~~--- 149 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDI-IVVGIPHEEIVKIAE-DEGVDIIIMGSHGK--T----NL----KEILLGSVTENVIKK--- 149 (162)
T ss_dssp HHHHHHHHHHTTCEEEEE-EEEECHHHHHHHHHH-HTTCSEEEEESCCS--S----CC----TTCSSCHHHHHHHHH---
T ss_pred HHHHHHHHHHcCCceEEE-EcCCCHHHHHHHHHH-HcCCCEEEEcCCCC--C----Cc----cceEecchHHHHHHh---
Confidence 666655431 12233322 223333443322222 24799999998853 2 12 223489999999863
Q ss_pred CCcccEEEEeee
Q 044119 789 GGTMSVLVVHCT 800 (816)
Q Consensus 789 ~~~~SVLvvqq~ 800 (816)
++++||||+..
T Consensus 150 -~~~pVlvv~~~ 160 (162)
T 1mjh_A 150 -SNKPVLVVKRK 160 (162)
T ss_dssp -CCSCEEEECCC
T ss_pred -CCCCEEEEeCC
Confidence 67899999753
No 21
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.11 E-value=8.2e-06 Score=76.50 Aligned_cols=134 Identities=16% Similarity=0.134 Sum_probs=80.6
Q ss_pred cEEEEeecCCCc--HHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhc--ccc
Q 044119 493 LRILCGIHHEDS--IHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTN--QTK 568 (816)
Q Consensus 493 ~riLv~v~~~~~--v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~--~~~ 568 (816)
-|||+|+...++ ....++.+..++... ..+++++|+++................+ ......++..+.++. +..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 78 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID--DAEVHFLTVIPSLPYYASLGMAYTAELP-GMDELREGSETQLKEIAKKF 78 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH--TCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc--CCeEEEEEEecCCcccccccccccchhh-hHHHHHHHHHHHHHHHHHHc
Confidence 379999998887 666666666665432 3689999999864322111000000000 001122333333333 111
Q ss_pred -cCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 569 -SSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 569 -~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
...+. ++...... +..+.|++.|++.++|+|+||.|+ ... .+. ++++.++|++++||+|-|
T Consensus 79 ~~~~~~--v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~---~~~~~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 79 SIPEDR--MHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDI---TTYLLGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp CCCGGG--EEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTC---CSCSSCHHHHHHHHHCSSEEEE
T ss_pred CCCCCc--eEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCC---eeeeeccHHHHHHHhCCCCEEE
Confidence 12344 55555544 789999999999999999999995 332 234 899999999999999844
No 22
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.05 E-value=7.4e-06 Score=78.63 Aligned_cols=127 Identities=12% Similarity=0.120 Sum_probs=86.6
Q ss_pred cEEEEeecC-CCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCc
Q 044119 493 LRILCGIHH-EDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSC 571 (816)
Q Consensus 493 ~riLv~v~~-~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 571 (816)
-|||+|+.. .++....++.+..++... ...++++|+++..... ..+. ....++.++.+........
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~-----~~~~------~~~~~~~l~~~~~~~~~~g 91 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRT-----KDED------IIEAKETLSWAVSIIRKEG 91 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTS-----CHHH------HHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCcc-----cHHH------HHHHHHHHHHHHHHHHhcC
Confidence 489999999 888888888887776543 3579999998854321 1111 1123334443333111124
Q ss_pred cccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 572 VSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 572 v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
+. ++..+.+. ..+..+.|++.|++.++|+|+||.|++.... +. ++++.++|++++||+|-|
T Consensus 92 ~~--~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~---~~~lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 92 AE--GEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTG---KLIFGSVARDVILKANKPVIC 153 (155)
T ss_dssp CC--EEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTS---CEECCHHHHHHHHHCSSCEEE
T ss_pred CC--ceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCC---CEEeccHHHHHHHhCCCCEEE
Confidence 55 55544442 2588999999999999999999999875432 33 899999999999999844
No 23
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.04 E-value=1.5e-05 Score=76.06 Aligned_cols=128 Identities=16% Similarity=0.159 Sum_probs=82.1
Q ss_pred ceEEEEecc--CCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC-----c---hhhhhhhHHHHHHHHHHhcCC-C-C
Q 044119 654 SYDVAVFFL--GGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQA-----E---NECERQLDEYVMNEFRERNAG-N-A 721 (816)
Q Consensus 654 ~~~i~v~f~--GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~-----~---~~~~~~~d~~~l~~~~~~~~~-~-~ 721 (816)
..+|++++- |.++.+.|+++|.++|+..+.+++++|++++.... . .+..++..++.++++.+.... + .
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 94 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGVN 94 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 468999999 99999999999999999999999999998753210 0 011223334556666554311 1 1
Q ss_pred ceEEEEEEe-CChHHHHHHH-HhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044119 722 CVVCREMMV-NDSTELMSSI-RLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVH 798 (816)
Q Consensus 722 ~v~y~e~~v-~~~~~~~~~i-~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvq 798 (816)
++.+. ... .+..+.+... .+ +.++||+|+|+++. + .| +. -+|...+.+... ++++||||+
T Consensus 95 ~~~~~-v~~~g~~~~~I~~~~a~-~~~~DlIV~G~~g~--~-------~~-~~-~~Gs~~~~vl~~----a~~PVlvV~ 156 (156)
T 3fg9_A 95 QVEPL-VYEGGDVDDVILEQVIP-EFKPDLLVTGADTE--F-------PH-SK-IAGAIGPRLARK----APISVIVVR 156 (156)
T ss_dssp SEEEE-EEECSCHHHHHHHTHHH-HHCCSEEEEETTCC--C-------TT-SS-SCSCHHHHHHHH----CSSEEEEEC
T ss_pred ceEEE-EEeCCCHHHHHHHHHHH-hcCCCEEEECCCCC--C-------cc-ce-eecchHHHHHHh----CCCCEEEeC
Confidence 23322 222 3444433222 22 36799999998863 2 12 22 489999999863 678999985
No 24
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.04 E-value=1.3e-05 Score=74.64 Aligned_cols=130 Identities=17% Similarity=0.117 Sum_probs=82.4
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCcc-
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSCV- 572 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~v- 572 (816)
|||+|+...++....++.+..++... ..+++++|+++-......-..+.+..+ ......++.++.+..+ .++
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---~g~~ 76 (137)
T 2z08_A 4 TILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPDYLGEPFFEEALR--RRLERAEGVLEEARAL---TGVP 76 (137)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECC--------------C--HHHHHHHHHHHHHHHH---HCCC
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCCCccccccchHHHHH--HHHHHHHHHHHHHHHH---cCCC
Confidence 79999999888888888877776532 368999999872210000000111000 0011223333322221 235
Q ss_pred ccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEE
Q 044119 573 SLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 573 ~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgI 638 (816)
. ++.... . .+..+.|++.|++.++|+|+||.|++.... +. ++++.++|++++||+|-|
T Consensus 77 ~--~~~~~~-~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~~---~~~~Gs~~~~vl~~~~~pVlv 135 (137)
T 2z08_A 77 K--EDALLL-E--GVPAEAILQAARAEKADLIVMGTRGLGALG---SLFLGSQSQRVVAEAPCPVLL 135 (137)
T ss_dssp G--GGEEEE-E--SSHHHHHHHHHHHTTCSEEEEESSCTTCCS---CSSSCHHHHHHHHHCSSCEEE
T ss_pred c--cEEEEE-e--cCHHHHHHHHHHHcCCCEEEECCCCCchhh---hhhhccHHHHHHhcCCCCEEE
Confidence 5 555443 2 578999999999999999999999876432 33 899999999999999854
No 25
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.03 E-value=2.8e-05 Score=75.78 Aligned_cols=139 Identities=11% Similarity=0.121 Sum_probs=81.8
Q ss_pred cEEEEeecCCC---------cHHHHHHHHHhhCCCC-CCCceEEEEEEeeecCCCc----cccc-cchhhhh-cccccch
Q 044119 493 LRILCGIHHED---------SIHNIINLLKALNPTE-MSPICAYVVHLVELVGRAE----SLSA-PYDAQRR-RLKENST 556 (816)
Q Consensus 493 ~riLv~v~~~~---------~v~~li~L~~~~~~~~-~sp~~v~~LhLvel~~r~s----~~~~-~~~~~~~-~~~~~~~ 556 (816)
-|||+|+...+ .....++.+..+.... ....+++++|+++...... +... ..+..+- .......
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKG 85 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHHH
Confidence 58999999888 7777888877754322 1357899999986432110 0000 1111000 0001122
Q ss_pred hHHHHHHhcccccCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCc
Q 044119 557 DRIMRAVTNQTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCT 635 (816)
Q Consensus 557 ~~i~~af~~~~~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCs 635 (816)
++.++.+.......++. ++..+.. .+..+.|++.|++.++|+||||.|++.... +. ++++.++|++++||+
T Consensus 86 ~~~l~~~~~~~~~~g~~--~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~---~~~~Gsva~~vl~~a~~p 157 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVG--CEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQ---KVFVGTVSAFCVKHAECP 157 (175)
T ss_dssp HHHHHHHHHHHHHHTCE--EEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC-----------CHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHCCCc--eEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhh---hhhcCchHHHHHhCCCCC
Confidence 34444333311112456 6554443 478999999999999999999999876432 34 899999999999999
Q ss_pred EEEE
Q 044119 636 IGIL 639 (816)
Q Consensus 636 VgIl 639 (816)
|-|.
T Consensus 158 Vlvv 161 (175)
T 2gm3_A 158 VMTI 161 (175)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8554
No 26
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.97 E-value=2.4e-05 Score=73.16 Aligned_cols=126 Identities=10% Similarity=0.071 Sum_probs=80.8
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeC-CC-CCc------hhh---hhhhHHHHHHHHHHhcCCCCce
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFK-GN-QAE------NEC---ERQLDEYVMNEFRERNAGNACV 723 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~-~~-~~~------~~~---~~~~d~~~l~~~~~~~~~~~~v 723 (816)
.+|++++-|.++++.|+++|.++|+..+.+++++|+.++ .. ... ++. .++.-++.++++.++... .+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 80 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDY--PI 80 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSS--CC
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCC--Cc
Confidence 589999999999999999999999999999999999843 11 000 000 112224566677665422 22
Q ss_pred EEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEeee
Q 044119 724 VCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCT 800 (816)
Q Consensus 724 ~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq~ 800 (816)
........+..+.+....+ ..++||+|+|++ . +.+ ..+|...+.+.. .++++||||+..
T Consensus 81 ~~~~~~~g~~~~~I~~~a~-~~~~dliV~G~~-~--~~~----------~~lgs~~~~vl~----~~~~pVlvv~~~ 139 (141)
T 1jmv_A 81 SEKLSGSGDLGQVLSDAIE-QYDVDLLVTGHH-Q--DFW----------SKLMSSTRQVMN----TIKIDMLVVPLR 139 (141)
T ss_dssp CCEEEEEECHHHHHHHHHH-HTTCCEEEEEEC-C--CCH----------HHHHHHHHHHHT----TCCSEEEEEECC
T ss_pred eEEEEecCCHHHHHHHHHH-hcCCCEEEEeCC-C--chh----------hhhcchHHHHHh----cCCCCEEEeeCC
Confidence 1112223344444333322 256999999988 3 211 226888888885 467899999754
No 27
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.97 E-value=2.6e-05 Score=75.48 Aligned_cols=130 Identities=19% Similarity=0.207 Sum_probs=80.3
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEE--EEEeCCCC--C----c---hhhhhhhHHHHHHHHHHhcCC-CC
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVF--KIDFKGNQ--A----E---NECERQLDEYVMNEFRERNAG-NA 721 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvv--r~~~~~~~--~----~---~~~~~~~d~~~l~~~~~~~~~-~~ 721 (816)
..+|++++-|.+..+.|+++|.++|+ .+.+++++ +++++... . . .+..++..++.++++.+.... +-
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~gv 95 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA 95 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 46999999999999999999999999 99999999 87653211 0 0 011122334566666654321 12
Q ss_pred c-eEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEeee
Q 044119 722 C-VVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCT 800 (816)
Q Consensus 722 ~-v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq~ 800 (816)
+ +.+. ....+..+.+....+ +.++||+|+|+++. +. + +.--+|.+.+.+... ++++||||+..
T Consensus 96 ~~v~~~-v~~G~~~~~I~~~a~-~~~~DLIV~G~~g~--~~----~----~~~~lGSva~~vl~~----a~~PVlvV~~~ 159 (163)
T 1tq8_A 96 KNVEER-PIVGAPVDALVNLAD-EEKADLLVVGNVGL--ST----I----AGRLLGSVPANVSRR----AKVDVLIVHTT 159 (163)
T ss_dssp CEEEEE-EECSSHHHHHHHHHH-HTTCSEEEEECCCC--CS----H----HHHHTBBHHHHHHHH----TTCEEEEECCC
T ss_pred CeEEEE-EecCCHHHHHHHHHH-hcCCCEEEECCCCC--Cc----c----cceeeccHHHHHHHh----CCCCEEEEeCC
Confidence 2 3332 223333333222222 26799999999864 21 1 223479999999863 57899999754
No 28
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.95 E-value=5.4e-05 Score=70.70 Aligned_cols=130 Identities=7% Similarity=0.039 Sum_probs=81.3
Q ss_pred EEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeee-cCCCccccccchhhhh-cccccchhHHHHHHhcccccCc
Q 044119 494 RILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVEL-VGRAESLSAPYDAQRR-RLKENSTDRIMRAVTNQTKSSC 571 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel-~~r~s~~~~~~~~~~~-~~~~~~~~~i~~af~~~~~~~~ 571 (816)
|||+|+...++....++.+..++... ..+++++|+++- +...... ......+. .......++.++.+.. . .+
T Consensus 4 ~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~ 77 (141)
T 1jmv_A 4 HILVAVDLSEESPILLKKAVGIAKRH--DAKLSIIHVDVNFSDLYTGL-IDVNMSSMQDRISTETQKALLDLAE-S--VD 77 (141)
T ss_dssp EEEEEECCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEECCGGGCCCC-EEHHHHHHTTCCCCHHHHHHHHHHH-H--SS
T ss_pred eEEEEecCchhhHHHHHHHHHHHHhc--CCEEEEEEEecCchhhhccc-cccchHHHHHHHHHHHHHHHHHHHH-H--cC
Confidence 79999999888888888777776532 368999999842 3211111 00000000 0111222333333222 1 13
Q ss_pred cccce-eeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhhhHHHHHHHhhcCCCcEEEE
Q 044119 572 VSLTS-QPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGIL 639 (816)
Q Consensus 572 v~~~v-~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~~~~~n~~vl~~ApCsVgIl 639 (816)
+. + +.... . .+..+.|++.|++.++|+|+||.| +... ..++++.++|++++||+|-|.
T Consensus 78 ~~--~~~~~~~-~--g~~~~~I~~~a~~~~~dliV~G~~-~~~~----~~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 78 YP--ISEKLSG-S--GDLGQVLSDAIEQYDVDLLVTGHH-QDFW----SKLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp SC--CCCEEEE-E--ECHHHHHHHHHHHTTCCEEEEEEC-CCCH----HHHHHHHHHHHTTCCSEEEEE
T ss_pred CC--ceEEEEe-c--CCHHHHHHHHHHhcCCCEEEEeCC-Cchh----hhhcchHHHHHhcCCCCEEEe
Confidence 44 4 22222 2 578999999999999999999999 6532 127899999999999998554
No 29
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.95 E-value=1.5e-05 Score=74.35 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=87.1
Q ss_pred EEEEeecCCCcHHHHHHHHHhhC-CCCCCCceEEEEEEeeecCCCcccc-ccchhhhhcccc-cchhHHHHHHhcccccC
Q 044119 494 RILCGIHHEDSIHNIINLLKALN-PTEMSPICAYVVHLVELVGRAESLS-APYDAQRRRLKE-NSTDRIMRAVTNQTKSS 570 (816)
Q Consensus 494 riLv~v~~~~~v~~li~L~~~~~-~~~~sp~~v~~LhLvel~~r~s~~~-~~~~~~~~~~~~-~~~~~i~~af~~~~~~~ 570 (816)
|||+|+...++....++.+..++ ... ...++++|+++......... .+.+.. .... ...++.++.+.......
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 78 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDA--DCTLTLIHVKPEFMLYGEAVLAAYDEI--EMKEEEKAKLLTQKFSTFFTEK 78 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCT--TEEEEEEEEECCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCC--CCEEEEEEEecCCCcccccccCcHHHH--HHHHHHHHHHHHHHHHHHHHHC
Confidence 79999999998888888888887 543 47899999988654321100 000000 0111 23344455444411223
Q ss_pred ccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhhhHHHHHHHhhcCCCcEEE
Q 044119 571 CVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 571 ~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~~~~~n~~vl~~ApCsVgI 638 (816)
++. ++...... +..+.|++.|+ ++|+|+||.|++.... +.++++.++|++++||+|-+
T Consensus 79 g~~--~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~---~~~Gs~~~~vl~~~~~pVlv 136 (138)
T 3idf_A 79 GIN--PFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLN---KIFASHQDDFIQKAPIPVLI 136 (138)
T ss_dssp TCC--CEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTS---SCCCCTTCHHHHHCSSCEEE
T ss_pred CCC--eEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHH---HHhCcHHHHHHhcCCCCEEE
Confidence 566 66555544 68999999999 9999999999876532 11488889999999999844
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.89 E-value=6.5e-05 Score=72.60 Aligned_cols=136 Identities=10% Similarity=0.058 Sum_probs=83.1
Q ss_pred CcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEE--EEeeecCCCccccc-cchhhhhcccccchhHHHHHHhcccc
Q 044119 492 ELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVV--HLVELVGRAESLSA-PYDAQRRRLKENSTDRIMRAVTNQTK 568 (816)
Q Consensus 492 e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~L--hLvel~~r~s~~~~-~~~~~~~~~~~~~~~~i~~af~~~~~ 568 (816)
--|||+|+...++....++.+..++. . ...++++ |+++......+... ..+.. .......++.++.+.....
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~--~a~l~ll~a~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-A--DAKLIIASAYLPQHEDARAADILKDESYK--VTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-T--TSEEEEEEECCC----------------------CCTHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeeeccCcccccccccccHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 45899999998888888888887776 4 3688899 88764431011000 00000 0112234455554433111
Q ss_pred cCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEE
Q 044119 569 SSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGIL 639 (816)
Q Consensus 569 ~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIl 639 (816)
...+. .++..+. ..+..+.|++.|++.++|+|+||.|++... .+. ++++.++|++++||+|-|.
T Consensus 92 ~~gv~-~v~~~v~---~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~---~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 92 NAGAK-NVEERPI---VGAPVDALVNLADEEKADLLVVGNVGLSTI---AGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp TTTCC-EEEEEEE---CSSHHHHHHHHHHHTTCSEEEEECCCCCSH---HHHHTBBHHHHHHHHTTCEEEEE
T ss_pred HcCCC-eEEEEEe---cCCHHHHHHHHHHhcCCCEEEECCCCCCcc---cceeeccHHHHHHHhCCCCEEEE
Confidence 11221 0333333 257899999999999999999999987653 234 8999999999999998543
No 31
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.83 E-value=3.1e-05 Score=73.15 Aligned_cols=134 Identities=13% Similarity=0.205 Sum_probs=78.0
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCcccc---ccchhhhh-cccccchhHHHHHHhcccc
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLS---APYDAQRR-RLKENSTDRIMRAVTNQTK 568 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~---~~~~~~~~-~~~~~~~~~i~~af~~~~~ 568 (816)
-|||+|+...++....++.+..++... ...++++|+++......+.. .+....+. .......++.++.+..+.
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 83 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQI--GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL- 83 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH-
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 479999999998888888888777543 46899999987532210000 00000000 000112222333222211
Q ss_pred cCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEE
Q 044119 569 SSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGIL 639 (816)
Q Consensus 569 ~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIl 639 (816)
++. ........ .+..+.|++.|++.++|+|+||.|++... . . ++++.++|++++||+|-|.
T Consensus 84 --~~~--~~~~~~~~--g~~~~~I~~~a~~~~~dliV~G~~~~~~~---~-~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 84 --GID--PAHRWLVW--GEPREEIIRIAEQENVDLIVVGSHGRHGL---A-LLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp --TCC--GGGEEEEE--SCHHHHHHHHHHHTTCSEEEEEEC------------CCCHHHHHHHHCSSEEEEE
T ss_pred --CCC--cceEEEec--CCHHHHHHHHHHHcCCCEEEEecCCCCCc---C-eEecchHHHHHHhCCCCEEEE
Confidence 222 11122233 57899999999999999999999987642 3 4 8899999999999998543
No 32
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.78 E-value=0.00018 Score=66.83 Aligned_cols=98 Identities=9% Similarity=0.029 Sum_probs=61.5
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEE-eC-C---------CC-Cch--hhhhhhHHHHHHHHHHh--c
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKID-FK-G---------NQ-AEN--ECERQLDEYVMNEFRER--N 717 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~-~~-~---------~~-~~~--~~~~~~d~~~l~~~~~~--~ 717 (816)
..+|++++-|.++.+.|+++|.++|+..+.+++++++. +. . .. +++ +..++..++.++++ +. .
T Consensus 4 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 82 (138)
T 1q77_A 4 MKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKLT 82 (138)
T ss_dssp CEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred ccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHhh
Confidence 46899999999999999999999999999999999988 52 0 00 011 11122233556666 44 1
Q ss_pred CCCCceEEEEEEeCChHHHHHHHHhhh--cCccEEEEcccC
Q 044119 718 AGNACVVCREMMVNDSTELMSSIRLIE--NIYDLVIVGKQR 756 (816)
Q Consensus 718 ~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~DLviVGr~~ 756 (816)
...+++.+. ....+..+ .|.+.+ .++||+|+|+++
T Consensus 83 ~~~~~~~~~-~~~g~~~~---~I~~~a~~~~~dliV~G~~g 119 (138)
T 1q77_A 83 GSTEIPGVE-YRIGPLSE---EVKKFVEGKGYELVVWACYP 119 (138)
T ss_dssp SCCCCCCEE-EECSCHHH---HHHHHHTTSCCSEEEECSCC
T ss_pred ccCCcceEE-EEcCCHHH---HHHHHHHhcCCCEEEEeCCC
Confidence 111144432 22333333 333333 379999999874
No 33
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.70 E-value=0.0004 Score=67.46 Aligned_cols=131 Identities=9% Similarity=0.153 Sum_probs=75.7
Q ss_pred ceEEEEeccCCc---------chHHHHHHHHHHh-cC--CCeEEEEEEEEeCCCC---------C-chhh------hhhh
Q 044119 654 SYDVAVFFLGGA---------DDREVMALVSRMA-GH--PSLTVTVFKIDFKGNQ---------A-ENEC------ERQL 705 (816)
Q Consensus 654 ~~~i~v~f~GG~---------ddreAL~~a~rma-~~--~~v~ltvvr~~~~~~~---------~-~~~~------~~~~ 705 (816)
..+|++++-|.+ ..+.|+++|.+++ +. .+.+++++|+..+... . .++. .++.
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 468999999999 8999999999986 54 6999999998753210 0 0000 1112
Q ss_pred HHHHHHHHHHhcCCCCceEEEEE-EeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhc
Q 044119 706 DEYVMNEFRERNAGNACVVCREM-MVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLAS 784 (816)
Q Consensus 706 d~~~l~~~~~~~~~~~~v~y~e~-~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las 784 (816)
.++.++++.+.... ..+.+... ...+..+.+....+ ..++||+|+|+++. + ++ +.--+|.+.+.+..
T Consensus 85 ~~~~l~~~~~~~~~-~g~~~~~~v~~G~~~~~I~~~a~-~~~~DLIVmG~~g~--~----~~----~~~~~Gsva~~vl~ 152 (175)
T 2gm3_A 85 GLHLLEFFVNKCHE-IGVGCEAWIKTGDPKDVICQEVK-RVRPDFLVVGSRGL--G----RF----QKVFVGTVSAFCVK 152 (175)
T ss_dssp HHHHHHHHHHHHHH-HTCEEEEEEEESCHHHHHHHHHH-HHCCSEEEEEECCC--C----------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCceEEEEecCCHHHHHHHHHH-HhCCCEEEEeCCCC--C----hh----hhhhcCchHHHHHh
Confidence 23566666554311 11333222 22333333222222 24799999998853 2 12 22347999999986
Q ss_pred CCCCCCcccEEEEeee
Q 044119 785 ADFYGGTMSVLVVHCT 800 (816)
Q Consensus 785 ~d~~~~~~SVLvvqq~ 800 (816)
. ++++||||+..
T Consensus 153 ~----a~~pVlvv~~~ 164 (175)
T 2gm3_A 153 H----AECPVMTIKRN 164 (175)
T ss_dssp H----CSSCEEEEECC
T ss_pred C----CCCCEEEEcCC
Confidence 3 67899999854
No 34
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.51 E-value=0.0002 Score=74.65 Aligned_cols=129 Identities=18% Similarity=0.152 Sum_probs=82.4
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC------------c--------hhhhhhhHHHHHHHHHH
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQA------------E--------NECERQLDEYVMNEFRE 715 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~------------~--------~~~~~~~d~~~l~~~~~ 715 (816)
+|++++-|.++++.|+++|.++|++.+.+++++|++++.... + .+..++.-++.++++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVRQ 81 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999988631100 0 00111222345666655
Q ss_pred hcC-CCCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccE
Q 044119 716 RNA-GNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSV 794 (816)
Q Consensus 716 ~~~-~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SV 794 (816)
... .+-++.+. ....+..+ .|.+.+.++||+|+|+++.. . ++ +..-+|...+.+... ++++|
T Consensus 82 ~~~~~g~~~~~~-~~~g~~~~---~I~~~~~~~dliV~G~~g~~-~----~~----~~~~~Gs~~~~v~~~----a~~PV 144 (268)
T 3ab8_A 82 SALAAGVAVEAV-LEEGVPHE---AILRRARAADLLVLGRSGEA-H----GD----GFGGLGSTADRVLRA----SPVPV 144 (268)
T ss_dssp HHHHTTCCEEEE-EEEECHHH---HHHHHHTTCSEEEEESSCTT-S----CT----TCCSCCHHHHHHHHH----CSSCE
T ss_pred HHHhCCCCeEEE-EecCCHHH---HHHhhccCCCEEEEeccCCC-c----cc----cccccchhHHHHHHh----CCCCE
Confidence 431 12233332 22233333 23333788999999988531 0 11 223479999999963 67899
Q ss_pred EEEeeec
Q 044119 795 LVVHCTE 801 (816)
Q Consensus 795 Lvvqq~~ 801 (816)
|||+...
T Consensus 145 lvv~~~~ 151 (268)
T 3ab8_A 145 LLAPGEP 151 (268)
T ss_dssp EEECSSC
T ss_pred EEECCCC
Confidence 9998653
No 35
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.50 E-value=0.00016 Score=77.16 Aligned_cols=131 Identities=12% Similarity=0.096 Sum_probs=84.8
Q ss_pred cceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCC------chh---hhhhhHHHHHHHHHHhcC-----
Q 044119 653 FSYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQA------ENE---CERQLDEYVMNEFRERNA----- 718 (816)
Q Consensus 653 ~~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~------~~~---~~~~~d~~~l~~~~~~~~----- 718 (816)
...+|++++-|.++++.|+++|.++|++.+.++++++++++.... ..+ ..++..++.++++++...
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLR 97 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 357999999999999999999999999999999999998632110 111 112222344555544321
Q ss_pred -CCCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEE
Q 044119 719 -GNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVV 797 (816)
Q Consensus 719 -~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvv 797 (816)
.+-++.+ ++. .|. ..+.|.+.++++||+|+|+++. + ++ +..-+|...+.+... +++.||||
T Consensus 98 ~~~~~~~~--~~~-~g~-~~~~I~~~a~~~DliV~G~~g~--~----~~----~~~~~Gs~~~~vl~~----~~~PVlvv 159 (309)
T 3cis_A 98 AGPPTVHS--EIV-PAA-AVPTLVDMSKDAVLMVVGCLGS--G----RW----PGRLLGSVSSGLLRH----AHCPVVII 159 (309)
T ss_dssp SCCSCEEE--EEE-SSC-HHHHHHHHGGGEEEEEEESSCT--T----CC----TTCCSCHHHHHHHHH----CSSCEEEE
T ss_pred CCCceEEE--EEe-cCC-HHHHHHHHhcCCCEEEECCCCC--c----cc----cccccCcHHHHHHHh----CCCCEEEE
Confidence 1223333 222 332 3334444456899999999853 2 11 223479999999863 68899999
Q ss_pred eeec
Q 044119 798 HCTE 801 (816)
Q Consensus 798 qq~~ 801 (816)
....
T Consensus 160 ~~~~ 163 (309)
T 3cis_A 160 HDED 163 (309)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 8654
No 36
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.39 E-value=0.14 Score=55.10 Aligned_cols=71 Identities=7% Similarity=-0.021 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHhH-HHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHhHhHHHHhhc
Q 044119 390 FARVAAIFLSLIFYKISIRNAILFGLILNI-KGVIELLLLTEWRTHKYVDDQTVTTIMLSHTAVTAIVIPLISMYY 464 (816)
Q Consensus 390 ~~K~~~~~l~~~~~~~~~~e~l~lgl~m~~-kG~v~l~~~~~~~~~~~i~~~~f~~lvl~vll~t~i~~pli~~ly 464 (816)
+.-+..++..++.+|.+.+|+..+++..+. +....+.++...+.. ++..--...+..+.+..+ +.++...|
T Consensus 239 ~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~-~~~la~~~ 310 (332)
T 3zux_A 239 GIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNIS-GSLLATYW 310 (332)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445556677788899999999998884443 445666666554421 222323334455554333 33443333
No 37
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.33 E-value=0.0003 Score=65.29 Aligned_cols=125 Identities=12% Similarity=0.032 Sum_probs=77.4
Q ss_pred cEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEe-ee-cCCC--cccccc--chhhhhcccccchhHHHHHHhc-
Q 044119 493 LRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLV-EL-VGRA--ESLSAP--YDAQRRRLKENSTDRIMRAVTN- 565 (816)
Q Consensus 493 ~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLv-el-~~r~--s~~~~~--~~~~~~~~~~~~~~~i~~af~~- 565 (816)
-|||+|+...++....++.+..++... ...++++|++ +. +... ...-.+ .+..+. .....++.++.++.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 80 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKL--GAELDILAVLEDVYNLERANVTFGLPFPPEIKEE--SKKRIERRLREVWEK 80 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHH--HHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHc--CCeEEEEEEecccccccccccccCCCCChHHHHH--HHHHHHHHHHHHHHH
Confidence 479999998888888888887776543 4689999998 63 1100 000001 111000 01122333443321
Q ss_pred ccccCccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhhhHHHHHHHhhcCCCcEEE
Q 044119 566 QTKSSCVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGI 638 (816)
Q Consensus 566 ~~~~~~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~~~~~n~~vl~~ApCsVgI 638 (816)
+....+ . ++..... .+..+.|++.|++.++|+|+||.|++ ++.++|++++||+|-|
T Consensus 81 ~~~~~~-~--~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~g~-----------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 81 LTGSTE-I--PGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS-----------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHSCCC-C--CCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG-----------GGTHHHHHHSSSEEEE
T ss_pred hhccCC-c--ceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCCCC-----------chHHHHHHhCCCceEe
Confidence 011123 5 5554432 57899999999999999999998864 3456899999999744
No 38
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.33 E-value=0.00057 Score=72.21 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=79.4
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEeCCh
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMVNDS 733 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v~~~ 733 (816)
..+|++++-|.+.++.|+.+|.++|++.+.+++++++..+ ++.++.++ ++.+++... +-++.+.-..-.+.
T Consensus 7 ~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~-----~~~~~~l~-~~~~~~~~~---~~~~~~~~~~~g~~ 77 (290)
T 3mt0_A 7 IRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR-----RDHSAALN-DLAQELREE---GYSVSTNQAWKDSL 77 (290)
T ss_dssp CCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS-----SCCHHHHH-HHHHHHHHT---TCCEEEEEECSSSH
T ss_pred hceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc-----HHHHHHHH-HHHHHHhhC---CCeEEEEEEeCCCH
Confidence 4689999999999999999999999999999999998763 11222222 233344321 12333322111233
Q ss_pred HHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEee
Q 044119 734 TELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHC 799 (816)
Q Consensus 734 ~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq 799 (816)
.+.+....+ +.++||+|+|+++. +. + +.--+|...+.+.. .+++.||||+.
T Consensus 78 ~~~i~~~a~-~~~~dliV~G~~~~--~~----~----~~~~~gs~~~~vl~----~~~~PVlvv~~ 128 (290)
T 3mt0_A 78 HQTIIAEQQ-AEGCGLIIKQHFPD--NP----L----KKAILTPDDWKLLR----FAPCPVLMTKT 128 (290)
T ss_dssp HHHHHHHHH-HHTCSEEEEECCCS--CT----T----STTSCCHHHHHHHH----HCSSCEEEECC
T ss_pred HHHHHHHHH-hcCCCEEEEecccC--Cc----h----hhcccCHHHHHHHh----cCCCCEEEecC
Confidence 443332222 46799999999864 21 1 23347888888886 36789999984
No 39
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.23 E-value=0.0014 Score=69.96 Aligned_cols=133 Identities=10% Similarity=0.026 Sum_probs=83.2
Q ss_pred ceEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCC-----C-ch---hhhh---hhHHHHHHHHHHhcC-CC
Q 044119 654 SYDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQ-----A-EN---ECER---QLDEYVMNEFRERNA-GN 720 (816)
Q Consensus 654 ~~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~-----~-~~---~~~~---~~d~~~l~~~~~~~~-~~ 720 (816)
..+|++++-|.++.+.|+.+|.++|++.+.+|+++|++.+... . .+ +..+ +.-++.++++.+... .+
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 86 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYLEAG 86 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4689999999999999999999999999999999998753110 0 01 0000 111245555555431 12
Q ss_pred CceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCCCCCcccccCCCccCCCccchhhhhhhcCCCCCCcccEEEEeee
Q 044119 721 ACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRGIGSPFEQEMKPWLEYAELGIIGDMLASADFYGGTMSVLVVHCT 800 (816)
Q Consensus 721 ~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d~~~~~~SVLvvqq~ 800 (816)
-++.+.-....+..+.+....+ +.++||+|+|+++. +. + +..-+|...+.+.. .+++.||||...
T Consensus 87 v~~~~~~~~~g~~~~~i~~~a~-~~~~DLiV~G~~g~--~~----~----~~~~~Gs~~~~vl~----~~~~PVlvv~~~ 151 (319)
T 3olq_A 87 IQIDIKVIWHNRPYEAIIEEVI-TDKHDLLIKMAHQH--DK----L----GSLIFTPLDWQLLR----KCPAPVWMVKDK 151 (319)
T ss_dssp CCEEEEEEECSCHHHHHHHHHH-HHTCSEEEEEEBCC--------C----CSCBCCHHHHHHHH----HCSSCEEEEESS
T ss_pred CeEEEEEEecCChHHHHHHHHH-hcCCCEEEEecCcC--ch----h----hcccccccHHHHHh----cCCCCEEEecCc
Confidence 2333322223444443332222 35799999999864 21 1 33347888888885 367899999875
Q ss_pred c
Q 044119 801 E 801 (816)
Q Consensus 801 ~ 801 (816)
.
T Consensus 152 ~ 152 (319)
T 3olq_A 152 E 152 (319)
T ss_dssp C
T ss_pred c
Confidence 4
No 40
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.22 E-value=0.00091 Score=70.68 Aligned_cols=119 Identities=12% Similarity=0.007 Sum_probs=82.9
Q ss_pred CCcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccC
Q 044119 491 SELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSS 570 (816)
Q Consensus 491 ~e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 570 (816)
..-||++|+...+.....++.+..++... ...++++|+.+-.. .+. ..+++.+.++. .
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~--------~~~--------~l~~~~~~l~~----~ 226 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKT--GGELHIIHVSEDGD--------KTA--------DLRVMEEVIGA----E 226 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEECSSSC--------CHH--------HHHHHHHHHHH----T
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhc--CCEEEEEEEccCch--------HHH--------HHHHHHHHHHH----c
Confidence 34689999998877777777777765432 35799999976432 100 11222222222 2
Q ss_pred ccccceeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhhhh-hHHHHHHHhhcCCCcEEEE
Q 044119 571 CVSLTSQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGLEFQEIETC-LHQLNLNIQAYAQCTIGIL 639 (816)
Q Consensus 571 ~v~~~v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~~~-~~~~n~~vl~~ApCsVgIl 639 (816)
.+. ++.... . .+..+.|++.|++.++|+|+||.+++... .+. ++++.+++++++||+|-++
T Consensus 227 ~~~--~~~~~~-~--g~~~~~I~~~a~~~~~dLlV~G~~~~~~~---~~~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 227 GIE--VHVHIE-S--GTPHKAILAKREEINATTIFMGSRGAGSV---MTMILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp TCC--EEEEEE-C--SCHHHHHHHHHHHTTCSEEEEECCCCSCH---HHHHHHCHHHHHHHHCSSCEEEE
T ss_pred CCc--EEEEEe-c--CCHHHHHHHHHHhcCcCEEEEeCCCCCCc---cceeeCcHHHHHHhcCCCCEEEE
Confidence 455 554333 2 58999999999999999999999987754 244 8999999999999998543
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.31 E-value=0.053 Score=56.42 Aligned_cols=221 Identities=8% Similarity=0.058 Sum_probs=136.4
Q ss_pred CcEEEEeecCCCcHHHHHHHHHhhCCCCCCCceEEEEEEeeecCCCccccccchhhhhcccccchhHHHHHHhcccccCc
Q 044119 492 ELRILCGIHHEDSIHNIINLLKALNPTEMSPICAYVVHLVELVGRAESLSAPYDAQRRRLKENSTDRIMRAVTNQTKSSC 571 (816)
Q Consensus 492 e~riLv~v~~~~~v~~li~L~~~~~~~~~sp~~v~~LhLvel~~r~s~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~ 571 (816)
.-.+||+..+|..-.+++.++..+...+. .+.+.++. +......+ ..+.+.+-+.|+.+ +
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~--p~~~~~~l-----------~~ql~~l~~~l~~r----~ 79 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLA--GNTDKENL-----------LSQLPSISEGFQEE----G 79 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC-----CTTCH-----------HHHHHHHHHHHHHT----T
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEc--cCCCccHH-----------HHHHHHHHHHHHhC----C
Confidence 56799999999999999999999987654 56666663 22111100 00123333444442 2
Q ss_pred cccceeeeEEecCCCChhHHHHHHHHhcC-----CCEEEEcCCCCCCcchhhhhhHHHHHHHhhcCCCcEEEEecCCCCC
Q 044119 572 VSLTSQPFKIIAPYHTMHESICKLAEDKF-----APLILIPFHKGLEFQEIETCLHQLNLNIQAYAQCTIGILVDSGLPR 646 (816)
Q Consensus 572 v~~~v~~~~~vsp~~~m~~~I~~~A~e~~-----~~liilp~h~~~~~~~~~~~~~~~n~~vl~~ApCsVgIlVdrg~~~ 646 (816)
|..++++-.-.+.++++-...+..+ .+.|+|+|..+.. ....++++++...+. -=.| ++-|....
T Consensus 80 ----v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e---~~~~y~~~i~~~~~~-~~nV--lil~~~~~ 149 (294)
T 3g40_A 80 ----VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRD---RDEEIREIIRKASMY-RMGV--LLFSKHPQ 149 (294)
T ss_dssp ----CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGG---GHHHHHHHHHHHHHT-TCEE--EEEECCTT
T ss_pred ----ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh---hhHHHHHHHHHHHHh-CceE--EEEecCCc
Confidence 6677777777899999999988875 4889999986653 233489999887665 3344 44443221
Q ss_pred CCCCCCcceEEEEecc--------CC--cchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHh
Q 044119 647 SLSSTHFSYDVAVFFL--------GG--ADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRER 716 (816)
Q Consensus 647 ~~~~~~~~~~i~v~f~--------GG--~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~ 716 (816)
. ......+|=+=.- || .+-..++-+|-.|.++.++++.+..+++. |.+++.-+++++++.+.
T Consensus 150 ~--~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a~~~l~~Lv~~ 221 (294)
T 3g40_A 150 A--GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAAENFLQSLAEL 221 (294)
T ss_dssp T--TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHHHHHHHHHHHH
T ss_pred c--CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHHHHHHHHHHHH
Confidence 1 0111234444322 22 35567999999999999999999998863 33444446778888776
Q ss_pred cCCCCceEEEEEEeCChHHHHHHHHhhhcCccEEEEcccCC
Q 044119 717 NAGNACVVCREMMVNDSTELMSSIRLIENIYDLVIVGKQRG 757 (816)
Q Consensus 717 ~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~~ 757 (816)
.-.+... + + |. .+..+++++. .+-||+++|-..+
T Consensus 222 ~Ri~a~~-~--v-v~--~~F~~il~~s-~~ADL~flGl~~~ 255 (294)
T 3g40_A 222 ARIPNVK-M--Q-VL--RENPIKSSKL-PFASLHIFSLDPN 255 (294)
T ss_dssp HTCCSCE-E--E-EE--SSCTTTSSSC-CCCSEEEEECCSS
T ss_pred hcCCceE-E--E-ec--CchHHHHhhC-cCCCEEEEcCCCC
Confidence 5333222 2 2 22 3344567774 7789999998764
No 42
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=70.67 E-value=23 Score=37.59 Aligned_cols=124 Identities=11% Similarity=0.114 Sum_probs=65.6
Q ss_pred HHHHhhhccCCCCchhHHHHHhHHHHHHHHHHHHHHHhhcccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 044119 326 AVLTGLVVPAGPPLGSAVVKKSEIIMENIFMPFFYIHIGQLFNVYSITN-WKAFAILQIIILAAYFARVAAIFLSLIFYK 404 (816)
Q Consensus 326 aflaGL~i~~~~~~~~~l~~kle~~~~~~~~PlfF~~~G~~idl~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 404 (816)
+.++|...|..... ++.. ....+.+.+...|++++...+.. ...+.......+.-++...+.++..++.++
T Consensus 27 ~~~lg~~~P~~~~~-------~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~ 98 (332)
T 3zux_A 27 FAAAAFFAPDTFKW-------AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN 98 (332)
T ss_dssp HHHHHHHCGGGTGG-------GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcchhhhh-------hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35677777764221 1222 23466777888899999888721 123443444455566677777888888777
Q ss_pred CChHHHHHHHHHH---hHHHHHHHHHHHHhhhccccCcc-hhhHHHHHHHHHHHhHhHHHHhhc
Q 044119 405 ISIRNAILFGLIL---NIKGVIELLLLTEWRTHKYVDDQ-TVTTIMLSHTAVTAIVIPLISMYY 464 (816)
Q Consensus 405 ~~~~e~l~lgl~m---~~kG~v~l~~~~~~~~~~~i~~~-~f~~lvl~vll~t~i~~pli~~ly 464 (816)
.+... ..|+.+ .|-|..+.+....+ .| |.+ ......++.++ +.++.|+.-+++
T Consensus 99 l~~~~--~~Glil~~~~P~~~~s~v~t~~a--~G--d~~la~~~~~~stll-~~~~~Pl~~~l~ 155 (332)
T 3zux_A 99 LPAEI--AVGVILVGCCPGGTASNVMTYLA--RG--NVALSVAVTSVSTLT-SPLLTPAIFLML 155 (332)
T ss_dssp CCHHH--HHHHHHHHHSCCCTHHHHHHHHT--TC--CHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CChHH--HHHHHHHhcCCchhHHHHHHHHh--CC--CHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 66533 333332 33444444333222 11 222 22223334444 555566665555
No 43
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=65.29 E-value=11 Score=38.49 Aligned_cols=92 Identities=13% Similarity=0.102 Sum_probs=54.3
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEE-EE----eCChHHH
Q 044119 664 GADDREVMALVSRMAGHPSL--TVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCRE-MM----VNDSTEL 736 (816)
Q Consensus 664 G~ddreAL~~a~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e-~~----v~~~~~~ 736 (816)
.|.|.+|++.|.|+.+. +. +++++.+-++ .. ++.+++.... +.+++...+ -. -.|...+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~----------~a-~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 101 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK----------QA-AETLRTALAM--GADRAILVVAADDVQQDIEPLAV 101 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG----------GG-HHHHHHHHHH--TCSEEEEEECCSSTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh----------hH-HHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 38999999999999977 55 8888865431 11 1233333222 445665544 11 1234455
Q ss_pred HHHHHhhh--cCccEEEEcccCCC-----CCcccccCCCc
Q 044119 737 MSSIRLIE--NIYDLVIVGKQRGI-----GSPFEQEMKPW 769 (816)
Q Consensus 737 ~~~i~~~~--~~~DLviVGr~~~~-----~s~~~~gl~~W 769 (816)
..+|.+.. .+||+|+.|++... -.|....+.+|
T Consensus 102 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 102 AKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 55555542 46999999998732 12445555555
No 44
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=63.41 E-value=11 Score=38.59 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=53.8
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEE-EE----eCChHHH
Q 044119 664 GADDREVMALVSRMAGHPSL--TVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCRE-MM----VNDSTEL 736 (816)
Q Consensus 664 G~ddreAL~~a~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e-~~----v~~~~~~ 736 (816)
.|.|.+|++.|.|+.+. +. +++++.+-++ . .++.+++.... +.+++...+ -. -.|...+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~----------~-a~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 104 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPA----------Q-CQETIRTALAM--GADRGIHVEVPPAEAERLGPLQV 104 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEEST----------T-HHHHHHHHHHH--TCSEEEEEECCHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh----------h-HHHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 48999999999999876 55 8888865431 0 12234433222 445665444 11 1234444
Q ss_pred HHHHHhhh--cCccEEEEcccCCC-----CCcccccCCCc
Q 044119 737 MSSIRLIE--NIYDLVIVGKQRGI-----GSPFEQEMKPW 769 (816)
Q Consensus 737 ~~~i~~~~--~~~DLviVGr~~~~-----~s~~~~gl~~W 769 (816)
..+|.+.. .+||+|+.|++... -.|....+.+|
T Consensus 105 A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 105 ARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 44555542 46999999998732 12445555555
No 45
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=63.06 E-value=7.9 Score=41.20 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=39.4
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcC
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNA 718 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 718 (816)
++++.|.||.|+--.|.++.+.....+..+.++++-.. - +...+.++++++.+++.
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg-~------~~~et~~~v~~~~~~~g 103 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR-W------KFQEMYRFRDQMVEEMG 103 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS-C------CCHHHHHHHHHHHHTTT
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC-C------CCHHHHHHHHHHHHHcC
Confidence 68999999999999999998887644555667775432 1 11223567888877763
No 46
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=59.09 E-value=9.1 Score=39.44 Aligned_cols=93 Identities=12% Similarity=0.044 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHhcCCCe--EEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEe---CChHHHHH
Q 044119 664 GADDREVMALVSRMAGHPSL--TVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMV---NDSTELMS 738 (816)
Q Consensus 664 G~ddreAL~~a~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v---~~~~~~~~ 738 (816)
.|.|.+|++.|.||++..+. +++++.+-++ . .++.+++... .+.+++...+-.- .|...+..
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G~~----------~-~~~~lr~ala--~GaD~vi~v~d~~~~~~~~~~~a~ 102 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD----------R-VDESLRKCLA--KGADRAVRVWDDAAEGSDAIVVGR 102 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG----------G-GHHHHHHHHH--TTCSEEEEECCGGGTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeCch----------h-HHHHHHHHHh--cCCCEEEEEcCcccccCCHHHHHH
Confidence 48999999999999865444 7888864321 1 1233444432 2445665443111 23344445
Q ss_pred HHHhhh--cCccEEEEcccCCC-----CCcccccCCCc
Q 044119 739 SIRLIE--NIYDLVIVGKQRGI-----GSPFEQEMKPW 769 (816)
Q Consensus 739 ~i~~~~--~~~DLviVGr~~~~-----~s~~~~gl~~W 769 (816)
+|.+.. .+||+|+.|++... -.|....+.+|
T Consensus 103 ~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 103 ILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 555542 36999999999732 12444455455
No 47
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=53.89 E-value=18 Score=38.00 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=55.3
Q ss_pred EEEEeccCCcchHHHHHHHHHHh-c-----------------CCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 656 DVAVFFLGGADDREVMALVSRMA-G-----------------HPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
++++-|.||.|+--.|.++.+.. + .++..+.++.+... .+.....++++++.+++
T Consensus 55 ~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg-------~~fpet~~fv~~~~~~y 127 (306)
T 2wsi_A 55 EISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQE-------ETFPTLENFVLETSERY 127 (306)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCT-------TCCHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCC-------CCCHHHHHHHHHHHHHc
Confidence 79999999999999999887752 1 13456777765432 22333457788888775
Q ss_pred CCCCceEEEEEEe-----CChHHHHHHHHhhhcCccEEEEcccCCC
Q 044119 718 AGNACVVCREMMV-----NDSTELMSSIRLIENIYDLVIVGKQRGI 758 (816)
Q Consensus 718 ~~~~~v~y~e~~v-----~~~~~~~~~i~~~~~~~DLviVGr~~~~ 758 (816)
. +....... ..-.+......+.....+.+++|.|++.
T Consensus 128 g----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 128 C----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp T----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred C----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 2 22111111 1122333333333345789999999864
No 48
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=43.47 E-value=6.8 Score=26.81 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=23.7
Q ss_pred HHHHHHHHHhccCcHHHHHHHHHhccc
Q 044119 199 PFLYFFSVTLAKPFFPVIAHAMNELNL 225 (816)
Q Consensus 199 ~~~l~lg~~ls~Ts~~vv~~iL~el~l 225 (816)
..++++|+++|.|++..+..++++++.
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 446789999999999999999999885
No 49
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=41.35 E-value=86 Score=32.83 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=50.8
Q ss_pred EEEEeccCCcchHHHHHHHHHHh-c-----------------CCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 656 DVAVFFLGGADDREVMALVSRMA-G-----------------HPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
++++.|.||.|+--.|-++.+-- + .|...+.|+.+-.. .+-.--.++++++.+++
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG-------~~FpET~ef~d~~~~~y 132 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHD-------DTFKTLENFIEETSLRY 132 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCT-------TCCHHHHHHHHHHHHHT
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCC-------CCCHHHHHHHHHHHHHh
Confidence 69999999999999999987741 1 13346677764321 11111135777777775
Q ss_pred CCCCceEEEEEEeC---ChHHHHHHHHhhhcCccEEEEcccCC
Q 044119 718 AGNACVVCREMMVN---DSTELMSSIRLIENIYDLVIVGKQRG 757 (816)
Q Consensus 718 ~~~~~v~y~e~~v~---~~~~~~~~i~~~~~~~DLviVGr~~~ 757 (816)
.. ++. ..... .-.+....+++....+|.++.|.|++
T Consensus 133 gL--~L~--v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 133 SL--SLY--ESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp TE--EEE--ECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CC--cEE--EeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 22 111 10000 01233344555445799999999987
No 50
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=36.75 E-value=69 Score=35.22 Aligned_cols=95 Identities=8% Similarity=0.073 Sum_probs=60.1
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcC-CCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcCCCCceEEEEEEe---
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGH-PSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNAGNACVVCREMMV--- 730 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~-~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~y~e~~v--- 730 (816)
.+|+|.|.||+|.--.|.++.++.++ ++.++.++|+-..-. . +.+.|.++.+++.+++..+ .......+
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-~----~s~~~~~~v~~~~~~lgi~--~~v~~~~~~~~ 86 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-A----NADAWVTHCENVCQQWQVP--LVVERVQLAQE 86 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-S----SHHHHHHHHHHHHHHTTCC--EEEECCCCCCS
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-c----ccHHHHHHHHHHHHHcCCc--EEEEEecCCCC
Confidence 47999999999999999999998877 889999999753211 1 1233456788888775332 11111111
Q ss_pred -CChHHHHH-----HHHhhhcCccEEEEcccC
Q 044119 731 -NDSTELMS-----SIRLIENIYDLVIVGKQR 756 (816)
Q Consensus 731 -~~~~~~~~-----~i~~~~~~~DLviVGr~~ 756 (816)
.+.++... .+.+.+.++|.++.|-+.
T Consensus 87 ~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~ 118 (433)
T 1ni5_A 87 GLGIEAQARQARYQAFARTLLPGEVLVTAQHL 118 (433)
T ss_dssp SSTTTTHHHHHHHHHHHHTCCTTEEEECCCCH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhCCeEEeeccc
Confidence 11222222 233445568999998753
No 51
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=36.09 E-value=65 Score=33.71 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=43.4
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeE-EEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcC
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLT-VTVFKIDFKGNQAENECERQLDEYVMNEFRERNA 718 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~-ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 718 (816)
.+|++.+.||+|.--.|.++.++.+..+.+ +.++++-.. .. .+...|.++.+++.+++.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g-~r----~~s~~~~~~v~~~a~~lg 84 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM-LR----ESAERDEEFCKEFAKERN 84 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC-SS----THHHHHHHHHHHHHHHHT
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC-CC----cccHHHHHHHHHHHHHcC
Confidence 489999999999999999998887776777 888887532 11 122345567777877753
No 52
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=31.65 E-value=58 Score=36.17 Aligned_cols=59 Identities=17% Similarity=0.158 Sum_probs=45.2
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
.+|+|.|.||+|.--.|.++.++.++.+.++.++|+-.. .. . .+...|.++++++.+++
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhg-lr-g--~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHM-FR-G--RESEEEMEFVKRFCVER 77 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECT-TC-T--HHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECC-CC-c--cccHHHHHHHHHHHHHc
Confidence 579999999999999999999988878889999997542 11 0 12344567888888875
No 53
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=30.94 E-value=60 Score=27.87 Aligned_cols=65 Identities=8% Similarity=0.027 Sum_probs=43.1
Q ss_pred eeeeEEec--CCCChhHHHHHHHHhcCCCEEEEcCCCCCCcc--hhhhhhHHHHHHHhhcCCCcEEEEecC
Q 044119 576 SQPFKIIA--PYHTMHESICKLAEDKFAPLILIPFHKGLEFQ--EIETCLHQLNLNIQAYAQCTIGILVDS 642 (816)
Q Consensus 576 v~~~~~vs--p~~~m~~~I~~~A~e~~~~liilp~h~~~~~~--~~~~~~~~~n~~vl~~ApCsVgIlVdr 642 (816)
.+|...+. +.....+.|.++++|++++.+++|.-++.... +.....+.+.+++-++ +..| .++|.
T Consensus 25 A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DE 93 (98)
T 1iv0_A 25 ASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEV-ELWDE 93 (98)
T ss_dssp CCCEEEEECCCHHHHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEE-EEECC
T ss_pred eeeeEEEEccCcHHHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCE-EEECC
Confidence 45555552 22345678999999999999999976554321 1112267777777666 8888 67775
No 54
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=30.92 E-value=0.88 Score=31.23 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=24.0
Q ss_pred HHHHHHHHHhChhHHHHHHHHhhhccCC
Q 044119 309 GITGALSDATGLNFMSGAVLTGLVVPAG 336 (816)
Q Consensus 309 ~~~~~lae~lG~~~ilGaflaGL~i~~~ 336 (816)
++++.++|.+++|++++.+++|+.+.+.
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 3456788999999999999999998864
No 55
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=28.50 E-value=50 Score=33.56 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=39.0
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhcC
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERNA 718 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~~ 718 (816)
++++-|.||+|+---|.++.++... +..+.++++... . +-..+.++++++.+++.
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg-~------~~~et~~~v~~~~~~~g 97 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTL-H------HFPQTLTLKNEIEKKYY 97 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCS-C------BCHHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCC-C------CCHHHHHHHHHHHHHhC
Confidence 6999999999999999999988764 455667765332 1 11223567888887763
No 56
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=26.58 E-value=1.9e+02 Score=31.25 Aligned_cols=31 Identities=13% Similarity=0.213 Sum_probs=22.8
Q ss_pred EEEEeCChHHHHHHHHhhhcCccEEEEcccC
Q 044119 726 REMMVNDSTELMSSIRLIENIYDLVIVGKQR 756 (816)
Q Consensus 726 ~e~~v~~~~~~~~~i~~~~~~~DLviVGr~~ 756 (816)
.+.++.|+.+.++...+-.+.||+||+=-..
T Consensus 264 v~vii~Da~~fl~~~~~~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 264 YQVLIEDCIPVLKRYAKEGREFDYVINDLTA 294 (381)
T ss_dssp EEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred eeeehHHHHHHHHhhhhccCceeEEEECCCC
Confidence 4677899988776555545679999997654
No 57
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=26.18 E-value=67 Score=31.32 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=36.1
Q ss_pred EEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEeCCCCCchhhhhhhHHHHHHHHHHhc
Q 044119 656 DVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDFKGNQAENECERQLDEYVMNEFRERN 717 (816)
Q Consensus 656 ~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 717 (816)
+|+|-|.||+|.--.|.++.+.. + .+.++++... . +...+.++++++.+++
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g-~------~~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTG-Y------LFPETYRFIDELTDKL 96 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECS-C------BCHHHHHHHHHHHHHT
T ss_pred CEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCC-C------CCHHHHHHHHHHHHHh
Confidence 79999999999999999988875 3 3556765432 1 1122356788888775
No 58
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=21.70 E-value=4.7e+02 Score=24.92 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=26.9
Q ss_pred eEEEEeccCCcchHHHHHHHHHHhcCCCeEEEEEEEEe
Q 044119 655 YDVAVFFLGGADDREVMALVSRMAGHPSLTVTVFKIDF 692 (816)
Q Consensus 655 ~~i~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 692 (816)
.++++.+.||.|.--++.++.+ .+.++..+++-.
T Consensus 7 ~kv~v~~SGG~DS~~ll~ll~~----~g~~v~~~~v~~ 40 (203)
T 3k32_A 7 MDVHVLFSGGKDSSLSAVILKK----LGYNPHLITINF 40 (203)
T ss_dssp EEEEEECCCSHHHHHHHHHHHH----TTEEEEEEEEEC
T ss_pred CeEEEEEECcHHHHHHHHHHHH----cCCCeEEEEEeC
Confidence 5899999999999988877765 356777787654
No 59
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.12 E-value=1e+02 Score=31.50 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=27.8
Q ss_pred eEEEEeccCCc---chHHHHHHHHHHhcCCCeEEEEEEEEe
Q 044119 655 YDVAVFFLGGA---DDREVMALVSRMAGHPSLTVTVFKIDF 692 (816)
Q Consensus 655 ~~i~v~f~GG~---ddreAL~~a~rma~~~~v~ltvvr~~~ 692 (816)
.+..++|.||+ |+.+...+|+++.++ +|.++++.|-.
T Consensus 107 ~~rIIlf~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgFG~ 146 (268)
T 4b4t_W 107 HQRIVAFVCSPISDSRDELIRLAKTLKKN-NVAVDIINFGE 146 (268)
T ss_dssp EEEEEEEECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEESS
T ss_pred ceEEEEEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeCC
Confidence 34556677776 667788888888776 89999998853
No 60
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=20.91 E-value=97 Score=28.87 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=32.2
Q ss_pred eeeeEEecCCCChhHHHHHHHHhcCCCEEEEcCCCCC
Q 044119 576 SQPFKIIAPYHTMHESICKLAEDKFAPLILIPFHKGL 612 (816)
Q Consensus 576 v~~~~~vsp~~~m~~~I~~~A~e~~~~liilp~h~~~ 612 (816)
..-...+-|..+|+..|.++|++-++|+||-|+..+.
T Consensus 90 ~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~ 126 (153)
T 2k4m_A 90 AALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGED 126 (153)
T ss_dssp EEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBC
T ss_pred cCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 4455677799999999999999999999999997655
No 61
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=20.15 E-value=1.5e+02 Score=27.05 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=43.1
Q ss_pred eeeeEEec--CCCChhHHHHHHHHhcCCCEEEEcCCCCCCcc--hhhhhhHHHHHHHhhcCCCcEEEEecCC
Q 044119 576 SQPFKIIA--PYHTMHESICKLAEDKFAPLILIPFHKGLEFQ--EIETCLHQLNLNIQAYAQCTIGILVDSG 643 (816)
Q Consensus 576 v~~~~~vs--p~~~m~~~I~~~A~e~~~~liilp~h~~~~~~--~~~~~~~~~n~~vl~~ApCsVgIlVdrg 643 (816)
.+|...+. ......+.|.++++|.+++.||+|.-++.... +.....+.+.+++-++-+..| .++|.-
T Consensus 27 A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DER 97 (138)
T 1nu0_A 27 ARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEV-KLHDER 97 (138)
T ss_dssp EEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEEE
T ss_pred EeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCC
Confidence 45555552 22344789999999999999999875543211 122226677777666557788 667653
No 62
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=20.04 E-value=1.6e+02 Score=27.14 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=40.0
Q ss_pred CCChhHHHHHHHHhcCCCEEEEcCCCCCCcchhh--hhhHHHHHHHhhcCCCcEEEEecC
Q 044119 585 YHTMHESICKLAEDKFAPLILIPFHKGLEFQEIE--TCLHQLNLNIQAYAQCTIGILVDS 642 (816)
Q Consensus 585 ~~~m~~~I~~~A~e~~~~liilp~h~~~~~~~~~--~~~~~~n~~vl~~ApCsVgIlVdr 642 (816)
.....+.|.+++++.+++.|++|.-.+....++. ...+.+...+.++.++.| .+||.
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV-~~vDE 98 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPV-VLWDE 98 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCE-EEECC
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCE-EEecC
Confidence 4668999999999999999998864333211111 125777777777778888 56665
Done!