BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044120
(232 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 100 LRTTTLKVHIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRKKV 159
L+T +KV + C CE +R+ + KG+ SV + KA VTV G ++ +++++ + +
Sbjct: 25 LQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRT 84
Query: 160 HKHAEIVTSKQEKKEEIKKDNEKFEVKSTELSTKFVEFKED------VKSKESNVPYFIH 213
K E+ ++ V + + +V +D ++ + V Y
Sbjct: 85 GKKVELWPYVP---YDVVAHPYAAGVYDKKAPSGYVRRVDDPGVSQLARASSTEVRYTT- 140
Query: 214 YVYAPQLFSDENPNACSIL 232
FSDENP AC ++
Sbjct: 141 ------AFSDENPAACVVM 153
>sp|P49015|ATP7A_CRIGR Copper-transporting ATPase 1 (Fragment) OS=Cricetulus griseus
GN=ATP7A PE=2 SV=1
Length = 1476
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 30/120 (25%)
Query: 18 NLHCPQCARKIEKRLLKIEAGIQSVDADF--EKAEIKVKGVIDVIKIHKLIQKTSQKKVE 75
+ C C IE+ L + E GI SV KAE++ +
Sbjct: 486 GMTCASCVANIERNLRR-EEGIYSVLVALMAGKAEVRYNPAV------------------ 526
Query: 76 LISPPLIK--IKEIG----AIKEIKEKEVILRTTTLKVHIHCAQCEHDLRKKLLKHKGIY 129
I PP+I I+E+G ++ E + IL+ + CA C H + L KHKGI+
Sbjct: 527 -IQPPVIAEFIRELGFGATVMENADEGDGILKLVVRG--MTCASCVHKIESTLTKHKGIF 583
>sp|Q75DD6|CCS1_ASHGO Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=CCS1 PE=3 SV=1
Length = 238
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 15 YNVNLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVIDVIKIHKLIQKTSQKKV 74
Y V +HC C +I R L+ G+Q V D E+ + V+G+ I + + T + +
Sbjct: 12 YAVPMHCGDCTGEI-SRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGRDAI 70
>sp|Q9WU84|CCS_MOUSE Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs
PE=1 SV=1
Length = 274
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 1 MAAKNKDIGVITGV-YNVNLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVIDV 59
MA+K+ D G + + + V + C C + K L + AG+Q+VD E + V+ +
Sbjct: 1 MASKSGDGGTVCALEFAVQMSCQSCVDAVHKTLKGV-AGVQNVDVQLENQMVLVQTTLPS 59
Query: 60 IKIHKLIQKTSQKKV 74
++ L++ T ++ V
Sbjct: 60 QEVQALLESTGRQAV 74
>sp|P40202|CCS1_YEAST Superoxide dismutase 1 copper chaperone OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CCS1 PE=1 SV=1
Length = 249
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 104 TLKVHIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRK 157
T + +HC C +D++ L GI S+N D + Q ++V+ ++ +++ LR
Sbjct: 10 TYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRN 63
>sp|Q4A0G1|COPA_STAS1 Copper-exporting P-type ATPase A OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=copA PE=3 SV=1
Length = 794
Score = 35.8 bits (81), Expect = 0.26, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 81/200 (40%), Gaps = 42/200 (21%)
Query: 1 MAAKNKDIGVITGVYNVNLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVK-GVIDV 59
M + K ITG + C CA +IEK L K++ +V+ EKA I
Sbjct: 1 MTEQKKTTIGITG-----MTCAACANRIEKNLNKLDDVEANVNVTTEKATISYNPESTSA 55
Query: 60 IKIHKLIQKTSQKKVELISPPLIKIKEIGAIKEIKEKEVILRTTTLKVHIHCAQCEHDLR 119
+ K I+KT G + E E +VI T CA C + +
Sbjct: 56 DDLTKTIEKTG----------------YGVLNETAELDVIGMT--------CAACSNRIE 91
Query: 120 KKLLKHKGI--YSVNADTKAQTVTVQGTIESDRLLSYLRKKVHKHAEIVTSKQEKKEEIK 177
K L + G+ +VN T+ T++ + S + L KK+ K I Q KKE +
Sbjct: 92 KVLNRTDGVDQATVNLTTENATISYNPSATS---VDALIKKIQK---IGYDAQPKKEVAE 145
Query: 178 KDNEKFEVKSTELSTKFVEF 197
K ++ K EL +K V+
Sbjct: 146 KSSQ----KELELRSKLVKL 161
>sp|Q04656|ATP7A_HUMAN Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3
Length = 1500
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 38/123 (30%)
Query: 18 NLHCPQCARKIEKRLLKIEAGIQSVDADF--EKAEIKVKGVIDVIKIHKLIQKTSQKKVE 75
+ C C IE+ L + E GI S+ KAE++ +
Sbjct: 496 GMTCASCVANIERNLRR-EEGIYSILVALMAGKAEVRYNPAV------------------ 536
Query: 76 LISPPLIK--IKEIGAIKEIKEK--------EVILRTTTLKVHIHCAQCEHDLRKKLLKH 125
I PP+I I+E+G + E E+++R T CA C H + L KH
Sbjct: 537 -IQPPMIAEFIRELGFGATVIENADEGDGVLELVVRGMT------CASCVHKIESSLTKH 589
Query: 126 KGI 128
+GI
Sbjct: 590 RGI 592
>sp|A3DH43|SYC_CLOTH Cysteine--tRNA ligase OS=Clostridium thermocellum (strain ATCC
27405 / DSM 1237) GN=cysS PE=3 SV=1
Length = 468
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 26 RKIEKRLLKIEAG-IQSVDADFEKAEIKVKGVIDVIK-IHKLIQKTSQKKVELISPPLIK 83
R+++ RLL I+A I+++D D A+ + + D++K ++ I TS E+I L
Sbjct: 341 RELQNRLLGIKAKFIEAMDDDINTAD-AIAAIFDIVKEVNTNINATSNSSKEIIDFSLSL 399
Query: 84 IKEIGAIKEIKEK 96
IKE+G + I +K
Sbjct: 400 IKELGGVLGIAQK 412
>sp|Q6CIG2|CCS1_KLULA Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CCS1 PE=3 SV=1
Length = 245
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 104 TLKVHIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRK 157
T V +HC C +D++K L GI +V D K + V+G +++ L+
Sbjct: 12 TYAVEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALKN 65
>sp|Q9Z972|SYI_CHLPN Isoleucine--tRNA ligase OS=Chlamydia pneumoniae GN=ileS PE=3 SV=1
Length = 1043
Score = 32.0 bits (71), Expect = 3.6, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 146 IESDRLLSYLRKKVHKHAEIV----TSKQEKKEEIKKDNEKFEVKSTELSTKFVEFKEDV 201
+E D++L L K++H EIV + ++E K ++++ F V ++ ++ E +
Sbjct: 786 VEMDKILPDLEKRMHDIREIVGLGHSLRKEHKLKVRQPLANFYVVGSKDRLSLLKTFEGL 845
Query: 202 KSKESNVPYFIHYVYAPQ-LFSDENPN 227
++E NV I Y AP +++ PN
Sbjct: 846 IAEELNVKNVIFYEEAPSFIYTTVKPN 872
>sp|P10952|TETO_CAMJU Tetracycline resistance protein TetO OS=Campylobacter jejuni
GN=tetO PE=3 SV=2
Length = 639
Score = 30.4 bits (67), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 22/159 (13%)
Query: 14 VYNVNLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVIDVIKIHKLIQKTSQKK 73
+Y+ LH R EK +KI + + ++ G I VI + ++Q S
Sbjct: 270 IYSGTLHLRDVIRISEKEKIKITEMYVPTNGELYSSDTACSGDI-VILPNDVLQLNSILG 328
Query: 74 VELISP-------PLIKIKEIGAIKEIKEKEVILRTTTLKVHIHCAQCEHDLRKKLLKHK 126
E++ P PL I+ A+K+ +++E++L T + C+ LLK
Sbjct: 329 NEILLPQRKFIENPLPMIQTTIAVKKSEQREILLGALT-----EISDCD-----PLLK-- 376
Query: 127 GIYSVNADTKAQTVTVQGTIESDRLLSYLRKKVHKHAEI 165
Y V+ T ++ G ++ + + + L +K H AEI
Sbjct: 377 --YYVDTTTHEIILSFLGNVQMEVICAILEEKYHVEAEI 413
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,040,598
Number of Sequences: 539616
Number of extensions: 3194220
Number of successful extensions: 17435
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 17064
Number of HSP's gapped (non-prelim): 546
length of query: 232
length of database: 191,569,459
effective HSP length: 114
effective length of query: 118
effective length of database: 130,053,235
effective search space: 15346281730
effective search space used: 15346281730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)