Query 044120
Match_columns 232
No_of_seqs 314 out of 2039
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:39:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044120.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044120hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10671 copA copper exporting 99.4 1.3E-11 2.9E-16 120.4 15.7 150 11-166 3-164 (834)
2 KOG0207 Cation transport ATPas 99.4 1.8E-11 4E-16 116.0 15.4 143 10-170 68-218 (951)
3 KOG1603 Copper chaperone [Inor 99.4 6.5E-12 1.4E-16 86.3 9.1 68 101-168 5-72 (73)
4 PF00403 HMA: Heavy-metal-asso 99.3 5.3E-12 1.1E-16 83.8 7.7 57 105-162 2-62 (62)
5 KOG0207 Cation transport ATPas 99.3 6.9E-11 1.5E-15 112.2 12.6 134 18-170 2-141 (951)
6 PF00403 HMA: Heavy-metal-asso 99.2 2.1E-10 4.6E-15 76.0 8.3 57 14-72 1-61 (62)
7 COG2608 CopZ Copper chaperone 99.1 8.3E-10 1.8E-14 75.4 8.5 64 102-166 3-70 (71)
8 COG2608 CopZ Copper chaperone 99.0 5.2E-09 1.1E-13 71.4 8.8 64 11-76 2-69 (71)
9 KOG1603 Copper chaperone [Inor 98.9 1.4E-08 3.1E-13 69.6 8.2 66 10-76 4-69 (73)
10 KOG4656 Copper chaperone for s 98.8 3.8E-08 8.2E-13 78.9 8.1 69 102-171 8-76 (247)
11 KOG4656 Copper chaperone for s 98.5 9.2E-07 2E-11 71.0 8.2 68 10-79 6-73 (247)
12 PLN02957 copper, zinc superoxi 98.3 5.9E-06 1.3E-10 69.4 10.0 71 101-172 6-76 (238)
13 PRK10671 copA copper exporting 97.9 3.2E-05 6.9E-10 76.0 7.7 64 101-167 3-67 (834)
14 COG2217 ZntA Cation transport 97.7 8E-05 1.7E-09 71.5 7.4 62 102-165 3-69 (713)
15 PLN02957 copper, zinc superoxi 97.6 0.00043 9.3E-09 58.2 9.6 66 12-79 7-72 (238)
16 COG2217 ZntA Cation transport 97.4 0.00039 8.5E-09 66.8 7.6 61 12-75 3-68 (713)
17 TIGR00003 copper ion binding p 97.4 0.0021 4.5E-08 40.3 8.1 60 103-163 4-67 (68)
18 TIGR00003 copper ion binding p 97.0 0.011 2.4E-07 36.8 8.7 59 12-72 3-65 (68)
19 PRK11033 zntA zinc/cadmium/mer 95.7 0.034 7.3E-07 54.3 7.5 64 101-165 53-118 (741)
20 PRK11033 zntA zinc/cadmium/mer 94.9 0.096 2.1E-06 51.1 7.6 63 10-74 52-116 (741)
21 TIGR02052 MerP mercuric transp 90.5 3.8 8.3E-05 27.5 8.8 61 104-165 26-90 (92)
22 cd00371 HMA Heavy-metal-associ 82.2 6.4 0.00014 21.7 6.5 49 108-156 6-56 (63)
23 PRK13748 putative mercuric red 81.6 7.7 0.00017 36.4 8.2 60 108-168 8-69 (561)
24 TIGR02052 MerP mercuric transp 79.0 16 0.00035 24.2 9.1 42 12-54 24-66 (92)
25 COG1888 Uncharacterized protei 74.4 15 0.00033 26.0 5.8 47 116-163 22-76 (97)
26 PF02680 DUF211: Uncharacteriz 71.6 18 0.00038 25.9 5.8 64 101-168 5-77 (95)
27 PRK13748 putative mercuric red 64.3 42 0.00091 31.5 8.6 62 14-77 3-67 (561)
28 COG0841 AcrB Cation/multidrug 62.1 1.5E+02 0.0033 30.4 12.4 121 24-156 62-207 (1009)
29 COG2177 FtsX Cell division pro 61.6 98 0.0021 26.9 9.7 84 18-134 68-152 (297)
30 PF01883 DUF59: Domain of unkn 59.6 19 0.00042 23.7 4.0 32 102-133 35-72 (72)
31 PRK11023 outer membrane lipopr 55.0 1.1E+02 0.0024 24.6 11.3 110 21-151 47-167 (191)
32 PRK14054 methionine sulfoxide 51.3 40 0.00086 26.9 5.1 45 112-156 10-76 (172)
33 PRK06418 transcription elongat 48.2 1E+02 0.0022 24.5 6.9 72 103-174 8-104 (166)
34 cd00371 HMA Heavy-metal-associ 47.7 44 0.00095 17.8 7.8 37 17-54 4-41 (63)
35 PRK10553 assembly protein for 45.9 1E+02 0.0022 21.6 5.9 42 115-156 19-61 (87)
36 PF13732 DUF4162: Domain of un 42.0 1E+02 0.0023 20.6 5.7 45 122-168 26-71 (84)
37 PF00873 ACR_tran: AcrB/AcrD/A 39.7 1.1E+02 0.0023 31.4 7.4 125 25-157 62-209 (1021)
38 cd04888 ACT_PheB-BS C-terminal 36.6 1.2E+02 0.0025 19.6 7.5 32 102-133 42-74 (76)
39 PF01206 TusA: Sulfurtransfera 36.0 1.2E+02 0.0026 19.6 4.9 49 105-163 3-54 (70)
40 PF03927 NapD: NapD protein; 33.0 1.6E+02 0.0035 20.0 6.5 41 115-156 17-58 (79)
41 PRK00058 methionine sulfoxide 32.5 1.1E+02 0.0023 25.4 5.0 45 112-156 52-118 (213)
42 PRK13014 methionine sulfoxide 31.9 89 0.0019 25.2 4.4 28 112-139 15-42 (186)
43 PRK10503 multidrug efflux syst 31.1 6.1E+02 0.013 26.2 11.6 132 18-156 62-218 (1040)
44 PF13291 ACT_4: ACT domain; PD 30.6 1.4E+02 0.0031 19.7 4.7 32 101-132 48-79 (80)
45 PRK05528 methionine sulfoxide 30.0 49 0.0011 25.9 2.5 45 112-156 8-69 (156)
46 TIGR00489 aEF-1_beta translati 29.6 2E+02 0.0044 20.2 6.4 22 113-134 62-83 (88)
47 PRK00435 ef1B elongation facto 29.0 2.1E+02 0.0045 20.1 5.9 23 112-134 61-83 (88)
48 COG2092 EFB1 Translation elong 29.0 2.1E+02 0.0045 20.2 6.6 67 56-134 16-83 (88)
49 PF04972 BON: BON domain; Int 27.7 43 0.00093 21.2 1.6 32 117-148 3-36 (64)
50 COG3643 Glutamate formiminotra 26.7 78 0.0017 26.8 3.2 53 115-167 20-74 (302)
51 PF14492 EFG_II: Elongation Fa 26.6 2E+02 0.0043 19.1 5.2 51 113-164 16-72 (75)
52 PF14437 MafB19-deam: MafB19-l 26.4 1.5E+02 0.0033 22.9 4.6 39 102-141 101-141 (146)
53 PRK09577 multidrug efflux prot 26.4 7.3E+02 0.016 25.6 12.5 43 115-157 158-208 (1032)
54 COG2177 FtsX Cell division pro 26.0 1.9E+02 0.0041 25.2 5.7 48 102-162 62-109 (297)
55 PF09580 Spore_YhcN_YlaJ: Spor 25.8 2.1E+02 0.0046 22.2 5.7 33 111-143 73-105 (177)
56 TIGR02945 SUF_assoc FeS assemb 25.8 1.2E+02 0.0025 21.3 3.8 40 116-160 58-97 (99)
57 TIGR03406 FeS_long_SufT probab 24.6 1.3E+02 0.0027 24.1 4.0 33 103-135 115-153 (174)
58 PF01625 PMSR: Peptide methion 23.7 90 0.002 24.4 3.0 27 112-138 7-33 (155)
59 PRK09579 multidrug efflux prot 22.7 8.5E+02 0.018 25.1 12.0 126 25-157 64-209 (1017)
60 PRK11198 LysM domain/BON super 22.4 1.9E+02 0.0042 22.1 4.6 49 112-160 25-74 (147)
61 TIGR00401 msrA methionine-S-su 22.4 81 0.0018 24.5 2.5 27 112-138 7-33 (149)
62 PRK11152 ilvM acetolactate syn 22.2 2.6E+02 0.0057 18.9 6.4 59 59-133 17-75 (76)
63 KOG3411 40S ribosomal protein 21.8 91 0.002 23.7 2.5 49 108-156 90-139 (143)
64 cd03421 SirA_like_N SirA_like_ 21.8 2.3E+02 0.005 18.1 5.7 49 108-167 6-56 (67)
65 COG4004 Uncharacterized protei 20.0 1.7E+02 0.0037 20.8 3.4 22 123-144 37-58 (96)
No 1
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.37 E-value=1.3e-11 Score=120.44 Aligned_cols=150 Identities=18% Similarity=0.282 Sum_probs=113.7
Q ss_pred eEEEEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeecCCHHHHHHHHHHhcCCceeecCCCcccc-cccc
Q 044120 11 ITGVYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVIDVIKIHKLIQKTSQKKVELISPPLIKI-KEIG 88 (232)
Q Consensus 11 ~~~~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~~d~~~i~~~i~~~~g~~~~~i~~~~~~~-~~~~ 88 (232)
++..+.| ||+|.+|+.+|+++|.+++ ||.++.+++. +..+.+..+...+...+++ +||.+.+.++ ...+ ....
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~-gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~-~Gy~~~~~~~-~~~~~~~~~ 77 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRP-DVEQADVSIT--EAHVTGTASAEALIETIKQ-AGYDASVSHP-KAKPLTESS 77 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCC-CcceEEEeee--EEEEEecCCHHHHHHHHHh-cCCccccccc-ccccccccc
Confidence 4678999 9999999999999999999 9999999994 4555555688899999998 9998887643 1110 0000
Q ss_pred hh-h---hhcc-----cccceEEEEEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEeeCCHHHHHHHHHHh
Q 044120 89 AI-K---EIKE-----KEVILRTTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRKK 158 (232)
Q Consensus 89 ~~-~---~~~~-----~~~~~~~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~k~ 158 (232)
.. + .... ......++.+.+ ||+|..|+..+++.+..++||.++.+++.++++.+.+..++..+...++ .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~ 156 (834)
T PRK10671 78 IPSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-K 156 (834)
T ss_pred cCchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-h
Confidence 00 0 0000 000112456767 9999999999999999999999999999999988876678888888888 7
Q ss_pred cCCcEEEe
Q 044120 159 VHKHAEIV 166 (232)
Q Consensus 159 ~g~~a~i~ 166 (232)
+||.+.++
T Consensus 157 ~Gy~a~~~ 164 (834)
T PRK10671 157 AGYGAEAI 164 (834)
T ss_pred cCCCcccc
Confidence 99887654
No 2
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.36 E-value=1.8e-11 Score=116.02 Aligned_cols=143 Identities=20% Similarity=0.258 Sum_probs=122.6
Q ss_pred eeEEEEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeec---CCHHHHHHHHHHhcCCceeecCCCccccc
Q 044120 10 VITGVYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGV---IDVIKIHKLIQKTSQKKVELISPPLIKIK 85 (232)
Q Consensus 10 ~~~~~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~---~d~~~i~~~i~~~~g~~~~~i~~~~~~~~ 85 (232)
..+..+++ ||+|.+|.+.|++.|+++. |+.++.+.+..++..+.++ ..++.+.+.+++ .|+.+++++. .-..
T Consensus 68 ~~~~~l~v~GmtC~scv~~i~~~l~~~~-gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~-~gf~a~~i~~-~~~~- 143 (951)
T KOG0207|consen 68 ASKCYLSVNGMTCASCVATIERNLRKIE-GVESAVVALSASKAEVIYDPAVTSPDSIAESIED-LGFSAELIES-VNGN- 143 (951)
T ss_pred cceeEEEecCceeHHHHHHHHHHhhccC-CcceEEEEeeccceeEEECCcccCchhHHHHHHh-cCccceehhc-ccCC-
Confidence 34667889 9999999999999999999 9999999999999999763 578889999997 9998887765 2111
Q ss_pred ccchhhhhcccccceEEEEEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEee---CCHHHHHHHHHHhcCC
Q 044120 86 EIGAIKEIKEKEVILRTTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGT---IESDRLLSYLRKKVHK 161 (232)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~---~d~~~l~~~l~k~~g~ 161 (232)
...+++|.+ ||.|++|..+|++.|.+++||.++.+++.++++.|..+ ..|.++++.|. ..|+
T Consensus 144 -------------~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie-~~~~ 209 (951)
T KOG0207|consen 144 -------------SNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE-ETGF 209 (951)
T ss_pred -------------CCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-hhcc
Confidence 004577887 99999999999999999999999999999999999864 78999999999 7999
Q ss_pred cEEEecCCC
Q 044120 162 HAEIVTSKQ 170 (232)
Q Consensus 162 ~a~i~~~~~ 170 (232)
.+.+.....
T Consensus 210 ~~~~~~~~~ 218 (951)
T KOG0207|consen 210 EASVRPYGD 218 (951)
T ss_pred cceeeeccc
Confidence 888877544
No 3
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.36 E-value=6.5e-12 Score=86.31 Aligned_cols=68 Identities=40% Similarity=0.633 Sum_probs=61.3
Q ss_pred EEEEEEeeccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEeeCCHHHHHHHHHHhcCCcEEEecC
Q 044120 101 RTTTLKVHIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRKKVHKHAEIVTS 168 (232)
Q Consensus 101 ~~~~l~v~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~k~~g~~a~i~~~ 168 (232)
+..+++++|||.+|+.+|.+.|+.+.||.++.+|..++++||.|.+||..|++.|++..++.+.+|..
T Consensus 5 ~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~~ 72 (73)
T KOG1603|consen 5 KTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWKV 72 (73)
T ss_pred cEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEecC
Confidence 56788899999999999999999999999999999999999999999999999999544377777643
No 4
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.34 E-value=5.3e-12 Score=83.81 Aligned_cols=57 Identities=28% Similarity=0.462 Sum_probs=52.4
Q ss_pred EEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEee---CCHHHHHHHHHHhcCCc
Q 044120 105 LKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGT---IESDRLLSYLRKKVHKH 162 (232)
Q Consensus 105 l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~---~d~~~l~~~l~k~~g~~ 162 (232)
|.+ ||+|++|+.+|+++|++++||.++.+|+.+++++|.++ ++++.|.++|+ ++||.
T Consensus 2 ~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 2 FKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred EEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 566 99999999999999999999999999999999999986 45699999999 79984
No 5
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.25 E-value=6.9e-11 Score=112.18 Aligned_cols=134 Identities=21% Similarity=0.338 Sum_probs=117.7
Q ss_pred eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeec--CCHHHHHHHHHHhcCCceeecCCCcccccccchhhhhcc
Q 044120 18 NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGV--IDVIKIHKLIQKTSQKKVELISPPLIKIKEIGAIKEIKE 95 (232)
Q Consensus 18 gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~--~d~~~i~~~i~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 95 (232)
||+|..|.+.++.+++..+ |+..+.+.+.++...|.+. .+++.+.+.++. .|+++.+++.....
T Consensus 2 gmtc~ac~~si~~~~~~~~-g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~~~------------ 67 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKP-GVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSEIT------------ 67 (951)
T ss_pred CccHHHHhhhHHHHHhcCC-CceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCccc------------
Confidence 7999999999999999999 9999999999999999873 688999999999 99998888662211
Q ss_pred cccceEEEEEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEee---CCHHHHHHHHHHhcCCcEEEecCCC
Q 044120 96 KEVILRTTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGT---IESDRLLSYLRKKVHKHAEIVTSKQ 170 (232)
Q Consensus 96 ~~~~~~~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~---~d~~~l~~~l~k~~g~~a~i~~~~~ 170 (232)
..+..|.+ ||+|.+|.+.+++.|++..||.++.+.+...+.+|..+ ..++.+.+.++ ++|+.++++....
T Consensus 68 ----~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i~~~~ 141 (951)
T KOG0207|consen 68 ----ASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELIESVN 141 (951)
T ss_pred ----cceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceehhccc
Confidence 12467777 99999999999999999999999999999999999853 78899999999 8999999887654
No 6
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.17 E-value=2.1e-10 Score=76.02 Aligned_cols=57 Identities=33% Similarity=0.574 Sum_probs=52.4
Q ss_pred EEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeec---CCHHHHHHHHHHhcCC
Q 044120 14 VYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGV---IDVIKIHKLIQKTSQK 72 (232)
Q Consensus 14 ~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~---~d~~~i~~~i~~~~g~ 72 (232)
+|.+ ||+|++|+++|+++|.+++ ||.++.+|+.+++++|.+. .++.+|.+.|++ +||
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~-GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~-~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLP-GVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK-AGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-TEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH-TTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCC-CCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH-hCc
Confidence 4789 9999999999999999999 9999999999999999875 346999999999 887
No 7
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.09 E-value=8.3e-10 Score=75.37 Aligned_cols=64 Identities=27% Similarity=0.460 Sum_probs=56.1
Q ss_pred EEEEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEE--e-eCCHHHHHHHHHHhcCCcEEEe
Q 044120 102 TTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQ--G-TIESDRLLSYLRKKVHKHAEIV 166 (232)
Q Consensus 102 ~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~--g-~~d~~~l~~~l~k~~g~~a~i~ 166 (232)
...|.+ ||+|.+|+..|+++|.+++||.++.+|+..+.++|. + .++.+.|++.|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 456777 999999999999999999999999999999776665 4 479999999999 899987654
No 8
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.97 E-value=5.2e-09 Score=71.40 Aligned_cols=64 Identities=31% Similarity=0.535 Sum_probs=56.0
Q ss_pred eEEEEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEee---cCCHHHHHHHHHHhcCCceee
Q 044120 11 ITGVYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKG---VIDVIKIHKLIQKTSQKKVEL 76 (232)
Q Consensus 11 ~~~~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~---~~d~~~i~~~i~~~~g~~~~~ 76 (232)
....|.+ ||+|.+|+..|+++|.+++ ||..+.+++..+.+.|.. ..+..+|.+.|.. +||.+..
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~-gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~-aGy~~~~ 69 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVD-GVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED-AGYKVEE 69 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCC-CeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH-cCCCeee
Confidence 3578999 9999999999999999999 999999999997777764 3588999999999 9996543
No 9
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.87 E-value=1.4e-08 Score=69.61 Aligned_cols=66 Identities=44% Similarity=0.759 Sum_probs=58.1
Q ss_pred eeEEEEEEeccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeecCCHHHHHHHHHHhcCCceee
Q 044120 10 VITGVYNVNLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVIDVIKIHKLIQKTSQKKVEL 76 (232)
Q Consensus 10 ~~~~~~~vgm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~~d~~~i~~~i~~~~g~~~~~ 76 (232)
.+..++.++|||.+|+.+|++.|..+. ||.++.+|...++++|.|..++..++..+++..+..+.+
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~-GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~ 69 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLK-GVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAEL 69 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccC-CeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEE
Confidence 456778889999999999999999999 999999999999999999999999999999933354433
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.76 E-value=3.8e-08 Score=78.86 Aligned_cols=69 Identities=20% Similarity=0.366 Sum_probs=64.9
Q ss_pred EEEEEeeccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEeeCCHHHHHHHHHHhcCCcEEEecCCCc
Q 044120 102 TTTLKVHIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRKKVHKHAEIVTSKQE 171 (232)
Q Consensus 102 ~~~l~v~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~k~~g~~a~i~~~~~~ 171 (232)
++.|.|.|+|++|++.|+..|..++||.++++|+.++.|.|.+...+..|.+.|+ .+|++|.+...+.+
T Consensus 8 ~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G~p 76 (247)
T KOG4656|consen 8 EAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAGKP 76 (247)
T ss_pred eEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCCch
Confidence 5678999999999999999999999999999999999999999999999999999 89999999877654
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.45 E-value=9.2e-07 Score=71.03 Aligned_cols=68 Identities=19% Similarity=0.420 Sum_probs=62.9
Q ss_pred eeEEEEEEeccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeecCCHHHHHHHHHHhcCCceeecCC
Q 044120 10 VITGVYNVNLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVIDVIKIHKLIQKTSQKKVELISP 79 (232)
Q Consensus 10 ~~~~~~~vgm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~~d~~~i~~~i~~~~g~~~~~i~~ 79 (232)
..++.|.|.|+|.+|++.|+..|..++ ||.++++|+..+.+.|.+...+..|...|+. +|+++.+...
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~-Gi~~vevdle~q~v~v~ts~p~s~i~~~le~-tGr~Avl~G~ 73 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVP-GINSVEVDLEQQIVSVETSVPPSEIQNTLEN-TGRDAVLRGA 73 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCC-CcceEEEEhhhcEEEEEccCChHHHHHHHHh-hChheEEecC
Confidence 456788899999999999999999999 9999999999999999988899999999999 9998887765
No 12
>PLN02957 copper, zinc superoxide dismutase
Probab=98.30 E-value=5.9e-06 Score=69.44 Aligned_cols=71 Identities=21% Similarity=0.375 Sum_probs=63.6
Q ss_pred EEEEEEeeccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEeeCCHHHHHHHHHHhcCCcEEEecCCCcc
Q 044120 101 RTTTLKVHIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRKKVHKHAEIVTSKQEK 172 (232)
Q Consensus 101 ~~~~l~v~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~k~~g~~a~i~~~~~~~ 172 (232)
+++.+.++|+|..|+.+|++.|.+++||.++.+++..++++|.+..+...++..|+ .+||.++++..+.+.
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~~~ 76 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGDPE 76 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCCcc
Confidence 45667779999999999999999999999999999999999998788899999999 899999988886653
No 13
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.89 E-value=3.2e-05 Score=76.04 Aligned_cols=64 Identities=16% Similarity=0.384 Sum_probs=56.6
Q ss_pred EEEEEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEeeCCHHHHHHHHHHhcCCcEEEec
Q 044120 101 RTTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRKKVHKHAEIVT 167 (232)
Q Consensus 101 ~~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~k~~g~~a~i~~ 167 (232)
+++.+.+ ||+|.+|+.+|+++|.+++||.++.+|+. +.+|.+..+++.+...++ .+||.+++..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence 3567888 99999999999999999999999999994 556667789999999999 8999998865
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.74 E-value=8e-05 Score=71.48 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=55.0
Q ss_pred EEEEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEee---CC-HHHHHHHHHHhcCCcEEE
Q 044120 102 TTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGT---IE-SDRLLSYLRKKVHKHAEI 165 (232)
Q Consensus 102 ~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~---~d-~~~l~~~l~k~~g~~a~i 165 (232)
+..|.+ ||+|++|+++|+ +|.+++||.++.+|+.+++++|..+ .+ ++.+...++ ..||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 356777 999999999999 9999999999999999999999854 45 688999999 89998876
No 15
>PLN02957 copper, zinc superoxide dismutase
Probab=97.64 E-value=0.00043 Score=58.19 Aligned_cols=66 Identities=21% Similarity=0.509 Sum_probs=57.8
Q ss_pred EEEEEEeccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeecCCHHHHHHHHHHhcCCceeecCC
Q 044120 12 TGVYNVNLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVIDVIKIHKLIQKTSQKKVELISP 79 (232)
Q Consensus 12 ~~~~~vgm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~~d~~~i~~~i~~~~g~~~~~i~~ 79 (232)
++.+.++|+|.+|+.+|++.|..++ ||..+.+++..+++.|.+..+...+...+++ .||.++++..
T Consensus 7 ~~~~~VgMsC~~Ca~~Iek~L~~~~-GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~-~Gy~a~~~~~ 72 (238)
T PLN02957 7 LTEFMVDMKCEGCVAAVKNKLETLE-GVKAVEVDLSNQVVRVLGSSPVKAMTAALEQ-TGRKARLIGQ 72 (238)
T ss_pred EEEEEECccCHHHHHHHHHHHhcCC-CeEEEEEEcCCCEEEEEecCCHHHHHHHHHH-cCCcEEEecC
Confidence 4566679999999999999999999 9999999999999999876678888888888 9998877654
No 16
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.00039 Score=66.81 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=53.2
Q ss_pred EEEEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeec---CC-HHHHHHHHHHhcCCcee
Q 044120 12 TGVYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGV---ID-VIKIHKLIQKTSQKKVE 75 (232)
Q Consensus 12 ~~~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~---~d-~~~i~~~i~~~~g~~~~ 75 (232)
+..|.+ ||+|++|+.+|+ +|++++ ||..+.+|+.++++.+.++ .+ .+.+...++. .||.+.
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~-gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~-~gy~~~ 68 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLP-GVEEARVNLATERATVVYDPEEVDLPADIVAAVEK-AGYSAR 68 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCC-CeeEEEeecccceEEEEecccccccHHHHHHHHHh-cCcccc
Confidence 467899 999999999999 999999 9999999999999999753 34 6778888888 888654
No 17
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.36 E-value=0.0021 Score=40.31 Aligned_cols=60 Identities=15% Similarity=0.229 Sum_probs=49.4
Q ss_pred EEEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEe---eCCHHHHHHHHHHhcCCcE
Q 044120 103 TTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQG---TIESDRLLSYLRKKVHKHA 163 (232)
Q Consensus 103 ~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g---~~d~~~l~~~l~k~~g~~a 163 (232)
..+.+ +|+|..|...+++.+...+++....+++....+.+.. ..+...+...+. ..|+.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence 45677 9999999999999999999999999999999988874 246777777776 677643
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.98 E-value=0.011 Score=36.79 Aligned_cols=59 Identities=31% Similarity=0.411 Sum_probs=46.6
Q ss_pred EEEEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeec---CCHHHHHHHHHHhcCC
Q 044120 12 TGVYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGV---IDVIKIHKLIQKTSQK 72 (232)
Q Consensus 12 ~~~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~---~d~~~i~~~i~~~~g~ 72 (232)
+..+.+ +++|..|+..++..+.... ++....+++....+.+.+. .+...+...+.. .|+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 65 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELE-GVSKVQVKLEKASVKVEFDAPQATEICIAEAILD-AGY 65 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCC-CEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHH-cCC
Confidence 456889 9999999999999999999 9999999999999888652 345555555544 454
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.71 E-value=0.034 Score=54.29 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=51.0
Q ss_pred EEEEEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEeeC-CHHHHHHHHHHhcCCcEEE
Q 044120 101 RTTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTI-ESDRLLSYLRKKVHKHAEI 165 (232)
Q Consensus 101 ~~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~~-d~~~l~~~l~k~~g~~a~i 165 (232)
++..+.+ ||+|.+|+.++++.+.+++||.++.+++.+.++.+.... ....+...++ .+||.+..
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a~~ 118 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSLRD 118 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hccccccc
Confidence 3456667 999999999999999999999999999999988876431 1256667777 78887653
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=94.87 E-value=0.096 Score=51.15 Aligned_cols=63 Identities=22% Similarity=0.418 Sum_probs=49.7
Q ss_pred eeEEEEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeecC-CHHHHHHHHHHhcCCce
Q 044120 10 VITGVYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVI-DVIKIHKLIQKTSQKKV 74 (232)
Q Consensus 10 ~~~~~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~~-d~~~i~~~i~~~~g~~~ 74 (232)
..+..+.+ ||+|.+|+..++..+..++ ||.++.+++.+.++.+.... ....+...++. .|+.+
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~-GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~-~Gy~a 116 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLA-GVNQVQVLFATEKLVVDADNDIRAQVESAVQK-AGFSL 116 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCC-CeeeEEEEcCCCeEEEEecccchHHHHHHHHh-ccccc
Confidence 44667889 9999999999999999999 99999999999998876421 12445556666 77754
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=90.50 E-value=3.8 Score=27.47 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=45.2
Q ss_pred EEEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEe---eCCHHHHHHHHHHhcCCcEEE
Q 044120 104 TLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQG---TIESDRLLSYLRKKVHKHAEI 165 (232)
Q Consensus 104 ~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g---~~d~~~l~~~l~k~~g~~a~i 165 (232)
.+.+ ++.|..|...+...+...+|+....+++......+.. ..+...+...+. ..|+.+++
T Consensus 26 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~ 90 (92)
T TIGR02052 26 TLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSSL 90 (92)
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeEe
Confidence 4545 8999999999999999999998888888877765542 245555655665 57776544
No 22
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=82.22 E-value=6.4 Score=21.66 Aligned_cols=49 Identities=29% Similarity=0.471 Sum_probs=35.8
Q ss_pred eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEee--CCHHHHHHHHH
Q 044120 108 HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGT--IESDRLLSYLR 156 (232)
Q Consensus 108 ~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~--~d~~~l~~~l~ 156 (232)
++.|..|...+...+....|+....+++....+.+... .+...+...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (63)
T cd00371 6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIE 56 (63)
T ss_pred CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHH
Confidence 78899999999999999999887777777766555532 25555544444
No 23
>PRK13748 putative mercuric reductase; Provisional
Probab=81.61 E-value=7.7 Score=36.45 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=47.6
Q ss_pred eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEe--eCCHHHHHHHHHHhcCCcEEEecC
Q 044120 108 HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQG--TIESDRLLSYLRKKVHKHAEIVTS 168 (232)
Q Consensus 108 ~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g--~~d~~~l~~~l~k~~g~~a~i~~~ 168 (232)
+|+|.+|..+++..+..++|+....+++....+.+.. ..+...+...+. ..|+.+.+...
T Consensus 8 g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~~ 69 (561)
T PRK13748 8 GMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLADA 69 (561)
T ss_pred CeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccCc
Confidence 8999999999999999999999899999888877663 245666666666 67877665555
No 24
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=78.96 E-value=16 Score=24.23 Aligned_cols=42 Identities=24% Similarity=0.493 Sum_probs=34.7
Q ss_pred EEEEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEe
Q 044120 12 TGVYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVK 54 (232)
Q Consensus 12 ~~~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~ 54 (232)
+..+.+ ++.|.+|...++..+.... ++.....++......+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVD-GVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCC-CEEEEEEEecCCEEEEE
Confidence 345668 9999999999999999999 98888888877776654
No 25
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.39 E-value=15 Score=25.98 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=33.2
Q ss_pred HHHHHHHhccCCeeEEEEe-----cC--CCEEEEEee-CCHHHHHHHHHHhcCCcE
Q 044120 116 HDLRKKLLKHKGIYSVNAD-----TK--AQTVTVQGT-IESDRLLSYLRKKVHKHA 163 (232)
Q Consensus 116 ~ki~~~l~~~~GV~sv~vd-----~~--~~~v~V~g~-~d~~~l~~~l~k~~g~~a 163 (232)
-.+-+.|++++||..+.+. .. +=++||.|+ +|-+.|.+.|. .+|..+
T Consensus 22 ve~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~I 76 (97)
T COG1888 22 VELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAI 76 (97)
T ss_pred HHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCee
Confidence 3556778888887766433 33 346677784 99999999999 787443
No 26
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=71.57 E-value=18 Score=25.87 Aligned_cols=64 Identities=23% Similarity=0.347 Sum_probs=40.6
Q ss_pred EEEEEEe-eccCcchHHHHHHHHhccCCeeEEEEe-----cCCC--EEEEEee-CCHHHHHHHHHHhcCCcEEEecC
Q 044120 101 RTTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNAD-----TKAQ--TVTVQGT-IESDRLLSYLRKKVHKHAEIVTS 168 (232)
Q Consensus 101 ~~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd-----~~~~--~v~V~g~-~d~~~l~~~l~k~~g~~a~i~~~ 168 (232)
+.++|-+ --|-.+ .-.+-+.|++++||..+.+. ..+. +++|.|. +|-+.|.+.|. .+| +.+-|.
T Consensus 5 rRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~G--g~IHSI 77 (95)
T PF02680_consen 5 RRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELG--GVIHSI 77 (95)
T ss_dssp EEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT---EEEEE
T ss_pred eEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcC--CeEEee
Confidence 4455544 224444 34677899999999877554 3333 4566785 99999999999 787 444443
No 27
>PRK13748 putative mercuric reductase; Provisional
Probab=64.28 E-value=42 Score=31.49 Aligned_cols=62 Identities=18% Similarity=0.348 Sum_probs=44.9
Q ss_pred EEEE-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeec--CCHHHHHHHHHHhcCCceeec
Q 044120 14 VYNV-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGV--IDVIKIHKLIQKTSQKKVELI 77 (232)
Q Consensus 14 ~~~v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~--~d~~~i~~~i~~~~g~~~~~i 77 (232)
.+.+ +++|.+|..+++..+...+ ++....+++......+... .+...+...+.. .++.....
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~-gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~-~g~~~~~~ 67 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVP-GVQSADVSYPKGSAQLAIEVGTSPDALTAAVAG-LGYRATLA 67 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCC-CeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHH-cCCeeecc
Confidence 3567 9999999999999999999 9888888988888766531 244445445554 66654433
No 28
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=62.09 E-value=1.5e+02 Score=30.44 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhccCCeeEEEEEcCCCEEEEe--e--cCCHH----HHHHHHHHhcCC-ceeecCCCcccccccchhhhhc
Q 044120 24 CARKIEKRLLKIEAGIQSVDADFEKAEIKVK--G--VIDVI----KIHKLIQKTSQK-KVELISPPLIKIKEIGAIKEIK 94 (232)
Q Consensus 24 Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~--~--~~d~~----~i~~~i~~~~g~-~~~~i~~~~~~~~~~~~~~~~~ 94 (232)
-...||++|..++ |+.++...-..+..+|+ . ..|++ ++.+++.+..+. ... ..++... .. +
T Consensus 62 Vt~piE~~l~~i~-gi~~i~S~S~~G~s~itv~F~~~~d~d~A~~~V~~kv~~~~~~LP~~-~~~p~v~--~~------~ 131 (1009)
T COG0841 62 VTQPIEQQLNGLD-GLDYMSSTSSSGSSSITVTFELGTDPDTAAVQVQNKIQQAESRLPSG-VQQPGVT--VE------K 131 (1009)
T ss_pred HhHHHHHHHhcCC-CccEEEEEEcCCcEEEEEEEeCCCChHHHHHHHHHHHHHHHhcCCCc-cCCCceE--ec------c
Confidence 4567999999999 99887766555655553 2 24555 344444442111 000 0000000 00 0
Q ss_pred ccccceEEEEEEe-e--cc----CcchHHHHHHHHhccCCeeEEEEecCC-CEEEEE--------eeCCHHHHHHHHH
Q 044120 95 EKEVILRTTTLKV-H--IH----CAQCEHDLRKKLLKHKGIYSVNADTKA-QTVTVQ--------GTIESDRLLSYLR 156 (232)
Q Consensus 95 ~~~~~~~~~~l~v-~--m~----C~~C~~ki~~~l~~~~GV~sv~vd~~~-~~v~V~--------g~~d~~~l~~~l~ 156 (232)
. ...-.+.+.+ + +. -.-=...+...|++++||.++.+-... ..+.|. ..+++.++...|+
T Consensus 132 ~--~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~ 207 (1009)
T COG0841 132 S--SSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIR 207 (1009)
T ss_pred C--CCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHH
Confidence 0 0011122222 1 21 112356689999999999999998763 556665 2367788888888
No 29
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=61.60 E-value=98 Score=26.93 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=56.9
Q ss_pred eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEeecCCHHHHHHHHHHhcCCceeecCC-Ccccccccchhhhhccc
Q 044120 18 NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVKGVIDVIKIHKLIQKTSQKKVELISP-PLIKIKEIGAIKEIKEK 96 (232)
Q Consensus 18 gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~~~d~~~i~~~i~~~~g~~~~~i~~-~~~~~~~~~~~~~~~~~ 96 (232)
+.+ ..|+..++..+..++ ||.++++ .+.++-.+.+++..|+. ....- +.|-+
T Consensus 68 ~~~-~~~~~~v~~~i~~~~-gV~~v~~------------~sre~~l~~L~~~lg~~-~~~~l~~nPLP------------ 120 (297)
T COG2177 68 DAD-QDDAALVREKIEGIP-GVKSVRF------------ISREEALKELQPWLGFG-ALLMLDENPLP------------ 120 (297)
T ss_pred CCC-hHHHHHHHHHHhcCC-CcceEEE------------eCHHHHHHHHHHHcCch-hhhcCCCCCCC------------
Confidence 555 889999999999999 9988775 26677777787778864 21111 01111
Q ss_pred ccceEEEEEEeeccCcchHHHHHHHHhccCCeeEEEEe
Q 044120 97 EVILRTTTLKVHIHCAQCEHDLRKKLLKHKGIYSVNAD 134 (232)
Q Consensus 97 ~~~~~~~~l~v~m~C~~C~~ki~~~l~~~~GV~sv~vd 134 (232)
..++++. +-+.-...+.++|+.++||.++..+
T Consensus 121 ----~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~ 152 (297)
T COG2177 121 ----DVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDD 152 (297)
T ss_pred ----ceEEEEe--CCCccHHHHHHHHHcCccceehhcc
Confidence 1233333 3366678899999999999987644
No 30
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=59.63 E-value=19 Score=23.73 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEeeccCcch------HHHHHHHHhccCCeeEEEE
Q 044120 102 TTTLKVHIHCAQC------EHDLRKKLLKHKGIYSVNA 133 (232)
Q Consensus 102 ~~~l~v~m~C~~C------~~ki~~~l~~~~GV~sv~v 133 (232)
++.+.+.+...+| ...|+.+|..++||.++.|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3455555555555 4788999999999998875
No 31
>PRK11023 outer membrane lipoprotein; Provisional
Probab=54.95 E-value=1.1e+02 Score=24.58 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=65.5
Q ss_pred ChhHHHHHHHHHhhccCCee---EEEEEcCCCEEEEeecCCHHHHHHHHHHhcCCceeecCCCcccccccchhhhhcccc
Q 044120 21 CPQCARKIEKRLLKIEAGIQ---SVDADFEKAEIKVKGVIDVIKIHKLIQKTSQKKVELISPPLIKIKEIGAIKEIKEKE 97 (232)
Q Consensus 21 C~~Ca~~Ie~~L~~~~~gV~---~v~v~~~~~~v~V~~~~d~~~i~~~i~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 97 (232)
...=..+|+.+|..-+ .+. ++.+....+.+++.|..+.........+.+.. + + .+...
T Consensus 47 D~~i~~~V~~aL~~~~-~l~~~~~I~V~v~~G~V~L~G~V~~~~~k~~A~~ia~~-v----~-GV~~V------------ 107 (191)
T PRK11023 47 DGTLELRVNNALSKDE-QIKKEARINVTAYQGKVLLTGQSPNAELSERAKQIAMG-V----E-GVNEV------------ 107 (191)
T ss_pred hHHHHHHHHHHHhhCc-ccCcCceEEEEEECCEEEEEEEeCCHHHHHHHHHHHhc-C----C-Cceee------------
Confidence 3344566777776655 553 57777789999998866555444444442211 0 0 11000
Q ss_pred cceEEEEE------EeeccCcchHHHHHHHHhccCCee--EEEEecCCCEEEEEeeCCHHHH
Q 044120 98 VILRTTTL------KVHIHCAQCEHDLRKKLLKHKGIY--SVNADTKAQTVTVQGTIESDRL 151 (232)
Q Consensus 98 ~~~~~~~l------~v~m~C~~C~~ki~~~l~~~~GV~--sv~vd~~~~~v~V~g~~d~~~l 151 (232)
...+.+ .-.++...-..+|..+|...+++. ++.|...++.|++.|.++..+.
T Consensus 108 --~N~l~V~~~~~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~~e~ 167 (191)
T PRK11023 108 --YNEIRQGQPIGLGTASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQREA 167 (191)
T ss_pred --cceeeeccccccccccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCHHHH
Confidence 001111 113445567889999999888876 4555566899999998876544
No 32
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=51.30 E-value=40 Score=26.89 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=33.2
Q ss_pred cchHHHHHHHHhccCCeeEEEEecCCCE-------------------EEEEee---CCHHHHHHHHH
Q 044120 112 AQCEHDLRKKLLKHKGIYSVNADTKAQT-------------------VTVQGT---IESDRLLSYLR 156 (232)
Q Consensus 112 ~~C~~ki~~~l~~~~GV~sv~vd~~~~~-------------------v~V~g~---~d~~~l~~~l~ 156 (232)
.+|=+-++..+.+++||.++.+-++++. |.|..+ ++-++|++..-
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~~~~PtY~~Vcsg~tgh~E~V~V~yDp~~isy~~Ll~~f~ 76 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGHVENPTYEQVCSGTTGHAEAVEITYDPAVISYRELLELFF 76 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCCcCCHHHHHHHHH
Confidence 4567778888999999999999887664 455543 56677777554
No 33
>PRK06418 transcription elongation factor NusA-like protein; Validated
Probab=48.19 E-value=1e+02 Score=24.49 Aligned_cols=72 Identities=22% Similarity=0.308 Sum_probs=45.0
Q ss_pred EEEEeeccCcchHHHH------------HHHHhcc------CCeeEEEEecCCCEEEE-EeeCCH------HHHHHHHHH
Q 044120 103 TTLKVHIHCAQCEHDL------------RKKLLKH------KGIYSVNADTKAQTVTV-QGTIES------DRLLSYLRK 157 (232)
Q Consensus 103 ~~l~v~m~C~~C~~ki------------~~~l~~~------~GV~sv~vd~~~~~v~V-~g~~d~------~~l~~~l~k 157 (232)
+-++-|+-|.+|.+++ +++|.++ .++.-...-..++++.+ ...-|. -..+++|++
T Consensus 8 ~c~kt~ilC~~c~~~~~~G~v~~~dv~i~~~l~~l~~~~~l~~~~~~k~~~~ddrvIfvV~~gdg~aIGk~G~~ik~l~~ 87 (166)
T PRK06418 8 VCVKTGLLCPRCQSLLDSGEVTELDVEVSKVLLKLEEDKELKDVEYKKAYEVDDLVILLVTSGPRIPIGKGGKIAKALSR 87 (166)
T ss_pred EEeccCccChhHHhHhhcCceEEeehHHHHHHHHhhccccccCceEEEEEEeCCEEEEEEeCCCcccccccchHHHHHHH
Confidence 4456699999998875 5667666 33332222222456553 322222 357889998
Q ss_pred hcCCcEEEecCCCcchh
Q 044120 158 KVHKHAEIVTSKQEKKE 174 (232)
Q Consensus 158 ~~g~~a~i~~~~~~~~~ 174 (232)
.+|++++++...+..++
T Consensus 88 ~lgk~VevVE~s~d~~~ 104 (166)
T PRK06418 88 KLGKKVRVVEKTNDIKK 104 (166)
T ss_pred HhCCcEEEEEcCCCHHH
Confidence 99999999987665433
No 34
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=47.66 E-value=44 Score=17.82 Aligned_cols=37 Identities=41% Similarity=0.760 Sum_probs=29.4
Q ss_pred E-eccChhHHHHHHHHHhhccCCeeEEEEEcCCCEEEEe
Q 044120 17 V-NLHCPQCARKIEKRLLKIEAGIQSVDADFEKAEIKVK 54 (232)
Q Consensus 17 v-gm~C~~Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~ 54 (232)
+ ++.|..|...+...+.... ++.....++......+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLP-GVESVEVDLETGKATVE 41 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCC-CEeEEEEEccCCEEEEE
Confidence 5 8899999999998888888 87777777766665554
No 35
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=45.92 E-value=1e+02 Score=21.64 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHHHHHHHhccCCeeEEEEecCCCEEEEEe-eCCHHHHHHHHH
Q 044120 115 EHDLRKKLLKHKGIYSVNADTKAQTVTVQG-TIESDRLLSYLR 156 (232)
Q Consensus 115 ~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g-~~d~~~l~~~l~ 156 (232)
...+.+.|..++|+.=...|...+++.|+= .-+...+++.|.
T Consensus 19 ~~~V~~~l~~ipg~Evh~~d~~~GKiVVtiE~~~~~~~~~~i~ 61 (87)
T PRK10553 19 ISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLLQTIE 61 (87)
T ss_pred HHHHHHHHHcCCCcEEEeecCCCCeEEEEEEeCChHHHHHHHH
Confidence 568899999999998777777778887762 234444444333
No 36
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=42.00 E-value=1e+02 Score=20.55 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=30.5
Q ss_pred HhccCCeeEEEEecCC-CEEEEEeeCCHHHHHHHHHHhcCCcEEEecC
Q 044120 122 LLKHKGIYSVNADTKA-QTVTVQGTIESDRLLSYLRKKVHKHAEIVTS 168 (232)
Q Consensus 122 l~~~~GV~sv~vd~~~-~~v~V~g~~d~~~l~~~l~k~~g~~a~i~~~ 168 (232)
|..++||.++..+... -.+.|....+...|+..|. ..|. +.-...
T Consensus 26 l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~-~~g~-I~~f~~ 71 (84)
T PF13732_consen 26 LEELPGVESVEQDGDGKLRIKLEDEETANELLQELI-EKGI-IRSFEE 71 (84)
T ss_pred HhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHH-hCCC-eeEEEE
Confidence 8888999998764332 2444555677889999998 6676 543333
No 37
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=39.67 E-value=1.1e+02 Score=31.38 Aligned_cols=125 Identities=12% Similarity=0.145 Sum_probs=67.8
Q ss_pred HHHHHHHHhhccCCeeEEEEEcCCCEEEEee----cCCHHHHHHHHHHhcCCceeecCCCcccccccchhhhhcccc-cc
Q 044120 25 ARKIEKRLLKIEAGIQSVDADFEKAEIKVKG----VIDVIKIHKLIQKTSQKKVELISPPLIKIKEIGAIKEIKEKE-VI 99 (232)
Q Consensus 25 a~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~~----~~d~~~i~~~i~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~-~~ 99 (232)
...+|++|..++ |+.++...-..+...+.- ..|.+.....++++... +.+..|. .-+........ ..
T Consensus 62 t~plE~~l~~v~-gv~~i~S~s~~g~s~i~v~f~~~~d~~~a~~~v~~~i~~----~~~~LP~---~~~~p~i~~~~~~~ 133 (1021)
T PF00873_consen 62 TKPLEEALSSVE-GVKEIRSTSREGSSSITVEFDDGTDIDEALQEVREKIDQ----IRSDLPP---GVEEPQIFKFDPSD 133 (1021)
T ss_dssp HHHHHHTHCSST-TEEEEEEEETTSEEEEEEEESTTS-HHHHHHHHHHHHHH----HGGGS-H---HHHHHEEEEEEEEC
T ss_pred HHHHHHHHcCCC-CeEEEEEEecCCcEEEEEEeccccCHHHHHHHHHHHHHh----hhhhCcc---cccCCceeeccCCC
Confidence 457899999999 999999988888888753 24555555555553211 2110110 00000000000 00
Q ss_pred eEEEEEEe-ec----c----CcchHHHHHHHHhccCCeeEEEEecCC-CEEEEE--------eeCCHHHHHHHHHH
Q 044120 100 LRTTTLKV-HI----H----CAQCEHDLRKKLLKHKGIYSVNADTKA-QTVTVQ--------GTIESDRLLSYLRK 157 (232)
Q Consensus 100 ~~~~~l~v-~m----~----C~~C~~ki~~~l~~~~GV~sv~vd~~~-~~v~V~--------g~~d~~~l~~~l~k 157 (232)
...+.+.+ +- + ..-....++..|.+++||..+.+.... ..+.|. ..+++.+|.+.|+.
T Consensus 134 ~~i~~~~l~~~~~~~~~~~l~~~~~~~l~~~L~~i~gV~~v~~~G~~~~ei~i~~d~~kl~~~gls~~~v~~~l~~ 209 (1021)
T PF00873_consen 134 SPIMILALTSDDGTLDLKELRDYAEEQLKPRLERIPGVARVDISGGREREIQIELDPEKLAAYGLSLSDVAQALQA 209 (1021)
T ss_dssp CEEEEEEEEESSSSS-HHHHHHHHHHCTHHHHHTSTTEEEEEESSS--EEEEEEE-HHHHHHTT--HHHHHHHHHH
T ss_pred ceeEEEEeccCCCCCCHHHHHHHHHHHHHHhccceeEEEEEEeccchhhhhhheechhhhhhhCCCHHHHHHHHHH
Confidence 01122322 11 1 122345789999999999999987654 445554 13677788888883
No 38
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.64 E-value=1.2e+02 Score=19.59 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=24.7
Q ss_pred EEEEEeeccCcc-hHHHHHHHHhccCCeeEEEE
Q 044120 102 TTTLKVHIHCAQ-CEHDLRKKLLKHKGIYSVNA 133 (232)
Q Consensus 102 ~~~l~v~m~C~~-C~~ki~~~l~~~~GV~sv~v 133 (232)
.+.|.+...-.. --..+.+.|++++||.++.+
T Consensus 42 ~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~ 74 (76)
T cd04888 42 NVTISIDTSTMNGDIDELLEELREIDGVEKVEL 74 (76)
T ss_pred EEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 455555555555 77899999999999999875
No 39
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=36.05 E-value=1.2e+02 Score=19.63 Aligned_cols=49 Identities=10% Similarity=0.052 Sum_probs=33.3
Q ss_pred EEe-eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEe--eCCHHHHHHHHHHhcCCcE
Q 044120 105 LKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQG--TIESDRLLSYLRKKVHKHA 163 (232)
Q Consensus 105 l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g--~~d~~~l~~~l~k~~g~~a 163 (232)
|-+ |+.|....-++.++|.+++.-+ .+.|.. .....+|...++ ..|+..
T Consensus 3 lD~rg~~CP~Pll~~~~~l~~l~~G~---------~l~v~~d~~~~~~di~~~~~-~~g~~~ 54 (70)
T PF01206_consen 3 LDLRGLSCPMPLLKAKKALKELPPGE---------VLEVLVDDPAAVEDIPRWCE-ENGYEV 54 (70)
T ss_dssp EECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHH-HHTEEE
T ss_pred EeCCCCCCCHHHHHHHHHHHhcCCCC---------EEEEEECCccHHHHHHHHHH-HCCCEE
Confidence 444 8999999999999999985332 333332 244577888888 788753
No 40
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=32.97 E-value=1.6e+02 Score=20.03 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHHhccCCeeEEEEecCCCEEEEEe-eCCHHHHHHHHH
Q 044120 115 EHDLRKKLLKHKGIYSVNADTKAQTVTVQG-TIESDRLLSYLR 156 (232)
Q Consensus 115 ~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g-~~d~~~l~~~l~ 156 (232)
...+.++|..++|+.=...+-. +++.|+- .-+...+.+.+.
T Consensus 17 ~~~v~~~l~~~~gvEVh~~~~~-GKiVVtiE~~~~~~~~~~~~ 58 (79)
T PF03927_consen 17 LEEVAEALAAIPGVEVHAVDED-GKIVVTIEAESSEEEVDLID 58 (79)
T ss_dssp HHHHHHHHCCSTTEEEEEEETT-TEEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcEEEeeCCC-CeEEEEEEeCChHHHHHHHH
Confidence 5688899999999976566655 7777663 455566666555
No 41
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=32.55 E-value=1.1e+02 Score=25.35 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=32.0
Q ss_pred cchHHHHHHHHhccCCeeEEEEecCCCE-------------------EEEEee---CCHHHHHHHHH
Q 044120 112 AQCEHDLRKKLLKHKGIYSVNADTKAQT-------------------VTVQGT---IESDRLLSYLR 156 (232)
Q Consensus 112 ~~C~~ki~~~l~~~~GV~sv~vd~~~~~-------------------v~V~g~---~d~~~l~~~l~ 156 (232)
.+|-+-++..+.+++||.++.+-+.++. |.|+.+ ++-++|++..-
T Consensus 52 gGCFWg~E~~F~~l~GV~~t~vGYagG~~~~PtY~~VcsG~tgH~EaV~V~YDp~~ISy~~LL~~Ff 118 (213)
T PRK00058 52 MGCFWGAERLFWQLPGVYSTAVGYAGGYTPNPTYREVCSGRTGHAEVVRVVYDPAVISYEQLLQVFW 118 (213)
T ss_pred ccCcchhHHHHhcCCCEEEEEeeecCCCCCCCChhhcccCCCCCeEEEEEEECCccCCHHHHHHHHH
Confidence 4566677888899999999999887542 344443 56677777655
No 42
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=31.86 E-value=89 Score=25.25 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=21.6
Q ss_pred cchHHHHHHHHhccCCeeEEEEecCCCE
Q 044120 112 AQCEHDLRKKLLKHKGIYSVNADTKAQT 139 (232)
Q Consensus 112 ~~C~~ki~~~l~~~~GV~sv~vd~~~~~ 139 (232)
.+|=+-++..+.+++||.++.+-+.++.
T Consensus 15 gGCFWg~E~~f~~l~GV~~t~vGYagG~ 42 (186)
T PRK13014 15 GGCFWGVEGVFQHVPGVVSVVSGYSGGH 42 (186)
T ss_pred cCCceeeHHHHccCCCEEEEEeeecCCC
Confidence 3455567778889999999999887664
No 43
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=31.09 E-value=6.1e+02 Score=26.18 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=67.9
Q ss_pred eccChh----HHHHHHHHHhhccCCeeEEEEEcCCCEEEEe--e--cCCHHHHHHHHHHhcCCceeecCCCcccccccch
Q 044120 18 NLHCPQ----CARKIEKRLLKIEAGIQSVDADFEKAEIKVK--G--VIDVIKIHKLIQKTSQKKVELISPPLIKIKEIGA 89 (232)
Q Consensus 18 gm~C~~----Ca~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~--~--~~d~~~i~~~i~~~~g~~~~~i~~~~~~~~~~~~ 89 (232)
|.+=.. =...||++|+.++ ||.+++..-..+...+. . ..|.+.....++.+... +.+..|.....
T Consensus 62 Gas~~~vE~~Vt~piE~~l~~v~-gv~~i~S~S~~G~s~i~v~f~~g~d~~~a~~ev~~~i~~----~~~~LP~~~~~-- 134 (1040)
T PRK10503 62 GASPDVMTSAVTAPLERQFGQMS-GLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINA----ATNLLPSDLPN-- 134 (1040)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCC-CccEEEEEecCCeEEEEEEEECCCChHHHHHHHHHHHHH----HHHhCCCccCC--
Confidence 554443 3457899999999 99999887666666654 2 23544444444443211 10000100000
Q ss_pred hhhhcc-cccceEEEEEEe-e--ccC----cchHHHHHHHHhccCCeeEEEEecCC-CEEEEE--------eeCCHHHHH
Q 044120 90 IKEIKE-KEVILRTTTLKV-H--IHC----AQCEHDLRKKLLKHKGIYSVNADTKA-QTVTVQ--------GTIESDRLL 152 (232)
Q Consensus 90 ~~~~~~-~~~~~~~~~l~v-~--m~C----~~C~~ki~~~l~~~~GV~sv~vd~~~-~~v~V~--------g~~d~~~l~ 152 (232)
...... .......+.+.+ + ++= ..-...++..|.+++||.++.+.... ..+.|. ..+++.++.
T Consensus 135 ~p~~~~~~~~~~pv~~~~l~~~~~~~~~L~~~~~~~l~~~L~~i~gV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~~v~ 214 (1040)
T PRK10503 135 PPVYSKVNPADPPIMTLAVTSTAMPMTQVEDMVETRVAQKISQVSGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVR 214 (1040)
T ss_pred CCEEEEeCCCCCceEEEEEEcCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecCCCceEEEEEECHHHHHHcCCCHHHHH
Confidence 000000 000001122222 1 110 11225788999999999999887653 455565 236677788
Q ss_pred HHHH
Q 044120 153 SYLR 156 (232)
Q Consensus 153 ~~l~ 156 (232)
..|+
T Consensus 215 ~ai~ 218 (1040)
T PRK10503 215 TAIT 218 (1040)
T ss_pred HHHH
Confidence 8887
No 44
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=30.62 E-value=1.4e+02 Score=19.69 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=26.0
Q ss_pred EEEEEEeeccCcchHHHHHHHHhccCCeeEEE
Q 044120 101 RTTTLKVHIHCAQCEHDLRKKLLKHKGIYSVN 132 (232)
Q Consensus 101 ~~~~l~v~m~C~~C~~ki~~~l~~~~GV~sv~ 132 (232)
..+.|.+......--..+...|++++||.+|.
T Consensus 48 ~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 48 ARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 45566677777788889999999999998874
No 45
>PRK05528 methionine sulfoxide reductase A; Provisional
Probab=29.96 E-value=49 Score=25.93 Aligned_cols=45 Identities=16% Similarity=0.233 Sum_probs=32.1
Q ss_pred cchHHHHHHHHhccCCeeEEEEecCCCE--------------EEEEee---CCHHHHHHHHH
Q 044120 112 AQCEHDLRKKLLKHKGIYSVNADTKAQT--------------VTVQGT---IESDRLLSYLR 156 (232)
Q Consensus 112 ~~C~~ki~~~l~~~~GV~sv~vd~~~~~--------------v~V~g~---~d~~~l~~~l~ 156 (232)
.+|=+-++..+.+++||.++.+-+.++. |.|+.+ ++-+.|++..-
T Consensus 8 gGCFWg~E~~f~~l~GV~~t~vGYagG~~~~p~~~~tgH~E~V~V~yDp~~isy~~LL~~f~ 69 (156)
T PRK05528 8 GGCLWGVQAFFKTLPGVIHTEAGRANGRTSTLDGPYDGYAECVKTHFDPRMVSITDLMGYLF 69 (156)
T ss_pred cCCchhhHHHHhcCCCEEEEEEEcCCCCCCCCCCCCCCcEEEEEEEECCCcCCHHHHHHHHH
Confidence 4677778889999999999998876643 334432 56677777655
No 46
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=29.56 E-value=2e+02 Score=20.16 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.4
Q ss_pred chHHHHHHHHhccCCeeEEEEe
Q 044120 113 QCEHDLRKKLLKHKGIYSVNAD 134 (232)
Q Consensus 113 ~C~~ki~~~l~~~~GV~sv~vd 134 (232)
.-...++.+|++++||+|+.+-
T Consensus 62 g~td~lee~i~~ve~V~svev~ 83 (88)
T TIGR00489 62 GGTEAAEESLSGIEGVESVEVT 83 (88)
T ss_pred cChHHHHHHHhcCCCccEEEEE
Confidence 5568999999999999999874
No 47
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=29.05 E-value=2.1e+02 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.2
Q ss_pred cchHHHHHHHHhccCCeeEEEEe
Q 044120 112 AQCEHDLRKKLLKHKGIYSVNAD 134 (232)
Q Consensus 112 ~~C~~ki~~~l~~~~GV~sv~vd 134 (232)
..-...++.++++++||+|+.+-
T Consensus 61 ~~~td~lee~i~~~e~Vqsvei~ 83 (88)
T PRK00435 61 EGGTEPVEEAFANVEGVESVEVE 83 (88)
T ss_pred CcCcHHHHHHHhccCCCcEEEEE
Confidence 46778999999999999999874
No 48
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=29.03 E-value=2.1e+02 Score=20.17 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=38.2
Q ss_pred cCCHHHHHHHHHHhcCCceeecCCCcccccccchhhhhcccccceEEEEEEeec-cCcchHHHHHHHHhccCCeeEEEEe
Q 044120 56 VIDVIKIHKLIQKTSQKKVELISPPLIKIKEIGAIKEIKEKEVILRTTTLKVHI-HCAQCEHDLRKKLLKHKGIYSVNAD 134 (232)
Q Consensus 56 ~~d~~~i~~~i~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~m-~C~~C~~ki~~~l~~~~GV~sv~vd 134 (232)
..|.+.+.+.|+.+.-..+.++.. ...+.. =....+.+.+-| +-.+-...++.+|..+.||+++.+-
T Consensus 16 evdl~~L~~~ik~~l~~g~~~~~~-~~epIa-----------FGLkal~l~vvv~D~Eg~td~~ee~l~~vegV~sveve 83 (88)
T COG2092 16 EVDLEELEEKIKEKLPEGYELIKI-EEEPIA-----------FGLKALKLYVVVEDKEGGTDALEEALEEVEGVESVEVE 83 (88)
T ss_pred CCCHHHHHHHHHHhccccceeccc-eeEeee-----------eeeeeEEEEEEEcccccCcHHHHHHHhhccCcceEEEE
Confidence 467888888888854222222211 000000 011233333333 3455678999999999999999764
No 49
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=27.73 E-value=43 Score=21.25 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=13.8
Q ss_pred HHHHHHhccCCee--EEEEecCCCEEEEEeeCCH
Q 044120 117 DLRKKLLKHKGIY--SVNADTKAQTVTVQGTIES 148 (232)
Q Consensus 117 ki~~~l~~~~GV~--sv~vd~~~~~v~V~g~~d~ 148 (232)
+|+.+|...+++. ++.+...++.+++.|.++.
T Consensus 3 ~v~~~L~~~~~~~~~~i~v~v~~g~v~L~G~v~s 36 (64)
T PF04972_consen 3 KVRAALRADPWLPDSNISVSVENGVVTLSGEVPS 36 (64)
T ss_dssp ----------CTT-TTEEEEEECTEEEEEEEESS
T ss_pred ccccccccccccCCCeEEEEEECCEEEEEeeCcH
Confidence 4555565533221 4566667888888886543
No 50
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=26.70 E-value=78 Score=26.82 Aligned_cols=53 Identities=8% Similarity=0.072 Sum_probs=32.6
Q ss_pred HHHHHHHHhccCCeeEE--EEecCCCEEEEEeeCCHHHHHHHHHHhcCCcEEEec
Q 044120 115 EHDLRKKLLKHKGIYSV--NADTKAQTVTVQGTIESDRLLSYLRKKVHKHAEIVT 167 (232)
Q Consensus 115 ~~ki~~~l~~~~GV~sv--~vd~~~~~v~V~g~~d~~~l~~~l~k~~g~~a~i~~ 167 (232)
..+|..++...++|.-+ +.|...++-.++...|+..+++++-..+++.++++.
T Consensus 20 ie~i~a~~~~~~~v~ildve~danhNRsViT~vgdp~~~~~A~f~~ik~AaelID 74 (302)
T COG3643 20 IEKIVAAAKSIPTVKILDVEMDANHNRSVITLVGDPSKVVNAAFALIKKAAELID 74 (302)
T ss_pred HHHHHHHHhcCCceEEEEeccCCCCCceEEEEecChHHHHHHHHHHHHHHHHhhc
Confidence 45677777888888644 444455665666667888877765534444444433
No 51
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=26.62 E-value=2e+02 Score=19.14 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=35.1
Q ss_pred chHHHHHHHHhcc----CCeeEEEEecCCCEEEEEe--eCCHHHHHHHHHHhcCCcEE
Q 044120 113 QCEHDLRKKLLKH----KGIYSVNADTKAQTVTVQG--TIESDRLLSYLRKKVHKHAE 164 (232)
Q Consensus 113 ~C~~ki~~~l~~~----~GV~sv~vd~~~~~v~V~g--~~d~~~l~~~l~k~~g~~a~ 164 (232)
+-..++..+|.++ |+. .+..|-.++.+.|.| .+..+-++..|+++.|-.++
T Consensus 16 ~d~~kl~~aL~~l~~eDP~l-~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v~ 72 (75)
T PF14492_consen 16 EDEPKLSEALQKLSEEDPSL-RVERDEETGELILSGMGELHLEVLLERLKRRFGVEVE 72 (75)
T ss_dssp HHHHHHHHHHHHHHHH-TTS-EEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBEE
T ss_pred hHHHHHHHHHHHHHhcCCeE-EEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCeeE
Confidence 3344555555555 444 578888889888875 57778889999976665544
No 52
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=26.39 E-value=1.5e+02 Score=22.93 Aligned_cols=39 Identities=23% Similarity=0.317 Sum_probs=29.6
Q ss_pred EEEEEe-eccCcchHHHHHHHHhccCCeeEEEEecC-CCEEE
Q 044120 102 TTTLKV-HIHCAQCEHDLRKKLLKHKGIYSVNADTK-AQTVT 141 (232)
Q Consensus 102 ~~~l~v-~m~C~~C~~ki~~~l~~~~GV~sv~vd~~-~~~v~ 141 (232)
.+.+.| ---|..|.+-|.....++ |+.+++|... ++++.
T Consensus 101 ~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 101 SMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVY 141 (146)
T ss_pred eEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEE
Confidence 456666 678999998887777776 9999988876 56443
No 53
>PRK09577 multidrug efflux protein; Reviewed
Probab=26.38 E-value=7.3e+02 Score=25.58 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHHHHHHhccCCeeEEEEecCCCEEEEE--------eeCCHHHHHHHHHH
Q 044120 115 EHDLRKKLLKHKGIYSVNADTKAQTVTVQ--------GTIESDRLLSYLRK 157 (232)
Q Consensus 115 ~~ki~~~l~~~~GV~sv~vd~~~~~v~V~--------g~~d~~~l~~~l~k 157 (232)
...++..|.+++||.++.++.....+.|. ..+++.+|.+.|+.
T Consensus 158 ~~~l~~~L~~v~GV~~V~~~G~e~~v~V~vD~~kl~~~Gls~~~V~~~l~~ 208 (1032)
T PRK09577 158 SANVLQALRRVEGVGKVQFWGAEYAMRIWPDPVKLAALGLTASDIASAVRA 208 (1032)
T ss_pred HHHHHHHHhcCCCcEEEEecCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 46799999999999999998755555553 23677888889983
No 54
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=25.97 E-value=1.9e+02 Score=25.18 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=39.3
Q ss_pred EEEEEeeccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEeeCCHHHHHHHHHHhcCCc
Q 044120 102 TTTLKVHIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRKKVHKH 162 (232)
Q Consensus 102 ~~~l~v~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~k~~g~~ 162 (232)
.+++..+.+ ..|...+.+.+.+++||.+++. ++.++-.+.|++.+|+.
T Consensus 62 ~vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~------------~sre~~l~~L~~~lg~~ 109 (297)
T COG2177 62 TVYLQIDAD-QDDAALVREKIEGIPGVKSVRF------------ISREEALKELQPWLGFG 109 (297)
T ss_pred EEEEecCCC-hHHHHHHHHHHhcCCCcceEEE------------eCHHHHHHHHHHHcCch
Confidence 456666666 8999999999999999998875 66788888888788854
No 55
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=25.83 E-value=2.1e+02 Score=22.25 Aligned_cols=33 Identities=12% Similarity=0.131 Sum_probs=26.9
Q ss_pred CcchHHHHHHHHhccCCeeEEEEecCCCEEEEE
Q 044120 111 CAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQ 143 (232)
Q Consensus 111 C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~ 143 (232)
-..=+..|.+.+.+++||.++.+=.....+.|.
T Consensus 73 ~~~~a~~i~~~v~~~~~V~~A~vvv~~~~a~Va 105 (177)
T PF09580_consen 73 RQQLADRIANRVKKVPGVEDATVVVTDDNAYVA 105 (177)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEECCEEEEE
Confidence 344578999999999999999887777777665
No 56
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=25.79 E-value=1.2e+02 Score=21.30 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=25.8
Q ss_pred HHHHHHHhccCCeeEEEEecCCCEEEEEeeCCHHHHHHHHHHhcC
Q 044120 116 HDLRKKLLKHKGIYSVNADTKAQTVTVQGTIESDRLLSYLRKKVH 160 (232)
Q Consensus 116 ~ki~~~l~~~~GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~k~~g 160 (232)
..++.+|..++|+.++.+++. ..-.-.++.+.+.-|.++|
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~-----~~~~~~~~~~~~~~~~~~~ 97 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV-----WDPPWTPERMSEEARLELG 97 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE-----eeCCCChHHCCHHHHHHcC
Confidence 457888999999999988753 2222445555555554554
No 57
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=24.62 E-value=1.3e+02 Score=24.07 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=23.1
Q ss_pred EEEEeeccCcchH------HHHHHHHhccCCeeEEEEec
Q 044120 103 TTLKVHIHCAQCE------HDLRKKLLKHKGIYSVNADT 135 (232)
Q Consensus 103 ~~l~v~m~C~~C~------~ki~~~l~~~~GV~sv~vd~ 135 (232)
+.+.+.+...+|. ..++.+|..++||.++.|++
T Consensus 115 V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 115 VDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 4455555555553 45889999999999888764
No 58
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []. It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represent MsrA, the crystal structure of which has been determined in a number of organisms. In Mycobacterium tuberculosis, the MsrA structure has been determined to 1.5 Angstrom resolution []. In contrast to the three catalytic cysteine residues found in previously characterised MsrA structures, M. tuberculosis MsrA represents a class containing only two functional cysteine residues. The overall structure shows no resemblance to the structures of MsrB (IPR002579 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. In a number of pathogenic bacteria including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor, 0019538 protein metabolic process, 0055114 oxidation-reduction process; PDB: 2GT3_A 1FF3_B 2IEM_A 3E0M_D 2J89_A 3PIN_B 3PIM_B 3PIL_B 2L90_A 3BQF_A ....
Probab=23.70 E-value=90 Score=24.35 Aligned_cols=27 Identities=11% Similarity=0.208 Sum_probs=22.8
Q ss_pred cchHHHHHHHHhccCCeeEEEEecCCC
Q 044120 112 AQCEHDLRKKLLKHKGIYSVNADTKAQ 138 (232)
Q Consensus 112 ~~C~~ki~~~l~~~~GV~sv~vd~~~~ 138 (232)
.+|=+.++..+.+++||.++.+-+.++
T Consensus 7 ~GCFW~~e~~f~~~~GV~~t~vGYagG 33 (155)
T PF01625_consen 7 GGCFWGVEAAFRRLPGVISTRVGYAGG 33 (155)
T ss_dssp ESSHHHHHHHHHTSTTEEEEEEEEESS
T ss_pred cCCCeEhHHHHhhCCCEEEEEecccCC
Confidence 467788899999999999999987654
No 59
>PRK09579 multidrug efflux protein; Reviewed
Probab=22.72 E-value=8.5e+02 Score=25.07 Aligned_cols=126 Identities=10% Similarity=0.073 Sum_probs=65.5
Q ss_pred HHHHHHHHhhccCCeeEEEEEcCCCEEEEe--e--cCCHHHHHHHHHHhcCCceeecCCCcccccccchhhhhcccccce
Q 044120 25 ARKIEKRLLKIEAGIQSVDADFEKAEIKVK--G--VIDVIKIHKLIQKTSQKKVELISPPLIKIKEIGAIKEIKEKEVIL 100 (232)
Q Consensus 25 a~~Ie~~L~~~~~gV~~v~v~~~~~~v~V~--~--~~d~~~i~~~i~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 100 (232)
...+|++|+.++ |+.+++..-..+...|. . ..|.+.....++++... +.---|.....+.-. .......
T Consensus 64 t~plE~~L~~v~-gi~~i~S~S~~G~s~I~v~f~~g~d~~~a~~~v~~~v~~-v~~~LP~~~~~P~i~-----~~~~~~~ 136 (1017)
T PRK09579 64 TQPLQQSLASAE-GIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANE-VKNQLPQDAEDPVLS-----KEAADAS 136 (1017)
T ss_pred HHHHHHHhcCCC-CceEEEEEecCCeEEEEEEEECCCCHHHHHHHHHHHHHH-HHHhCCCCCCCCeEE-----eCCCCCc
Confidence 456899999999 99999877777776663 2 23555444444442211 000001000000000 0000000
Q ss_pred EEEEEEe-e--ccC----cchHHHHHHHHhccCCeeEEEEecCCC-EEEEE--------eeCCHHHHHHHHHH
Q 044120 101 RTTTLKV-H--IHC----AQCEHDLRKKLLKHKGIYSVNADTKAQ-TVTVQ--------GTIESDRLLSYLRK 157 (232)
Q Consensus 101 ~~~~l~v-~--m~C----~~C~~ki~~~l~~~~GV~sv~vd~~~~-~v~V~--------g~~d~~~l~~~l~k 157 (232)
..+.+.+ + ++- .-=...++..|.+++||.++.+..... .+.|. ..+++.+|.+.|+.
T Consensus 137 ~v~~~~~~~~~~~~~~L~~~~~~~i~~~L~~i~GV~~V~~~G~~~~ei~V~vd~~kl~~~gls~~dV~~al~~ 209 (1017)
T PRK09579 137 ALMYISFYSEEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSAGDVTQAVRR 209 (1017)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHhhcCCCceEEEecCCCceEEEEEeCHHHHHHcCCCHHHHHHHHHH
Confidence 1122222 1 110 112356889999999999998765543 44554 13667888888983
No 60
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=22.42 E-value=1.9e+02 Score=22.10 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=32.5
Q ss_pred cchHHHHHHHHhccC-CeeEEEEecCCCEEEEEeeCCHHHHHHHHHHhcC
Q 044120 112 AQCEHDLRKKLLKHK-GIYSVNADTKAQTVTVQGTIESDRLLSYLRKKVH 160 (232)
Q Consensus 112 ~~C~~ki~~~l~~~~-GV~sv~vd~~~~~v~V~g~~d~~~l~~~l~k~~g 160 (232)
..-+..|.++|.+.. +...+.|...++.|++.|.+.......++...+|
T Consensus 25 ~~~~~~i~~~i~~~~~~~~~i~V~v~~G~v~l~G~v~s~~~~~~~~~aa~ 74 (147)
T PRK11198 25 EDAADALKEHISKQGLGDADVNVQVEDGKATVSGDAASQEAKEKILLAVG 74 (147)
T ss_pred HHHHHHHHHHHHhcCCCcCCceEEEeCCEEEEEEEeCCHHHHHHHHHHhc
Confidence 334567777776642 3444566667999999998777666666663444
No 61
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=22.36 E-value=81 Score=24.47 Aligned_cols=27 Identities=19% Similarity=0.291 Sum_probs=21.8
Q ss_pred cchHHHHHHHHhccCCeeEEEEecCCC
Q 044120 112 AQCEHDLRKKLLKHKGIYSVNADTKAQ 138 (232)
Q Consensus 112 ~~C~~ki~~~l~~~~GV~sv~vd~~~~ 138 (232)
.+|=+-++..+.+++||.++.+-+.++
T Consensus 7 gGCFWg~E~~f~~~~GV~~t~~GYagG 33 (149)
T TIGR00401 7 GGCFWGVEKYFWLIPGVYSTAVGYTGG 33 (149)
T ss_pred cCCchhhHHHHhcCCCEEEEEEeeCCC
Confidence 456777888889999999998877654
No 62
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=22.20 E-value=2.6e+02 Score=18.93 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCceeecCCCcccccccchhhhhcccccceEEEEEEeeccCcchHHHHHHHHhccCCeeEEEE
Q 044120 59 VIKIHKLIQKTSQKKVELISPPLIKIKEIGAIKEIKEKEVILRTTTLKVHIHCAQCEHDLRKKLLKHKGIYSVNA 133 (232)
Q Consensus 59 ~~~i~~~i~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~m~C~~C~~ki~~~l~~~~GV~sv~v 133 (232)
.+.+...+++ -||.++.++- .+. + .+....+.+.++ .+.....+.+.|.++.+|..+.+
T Consensus 17 L~Ri~~lf~r-RGfnI~sl~v-~~t--~----------~~~~sriti~v~--~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 17 LERVLRVVRH-RGFQVCSMNM-TQN--T----------DAQNINIELTVA--SERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred HHHHHHHHhc-CCeeeeeEEe-eec--C----------CCCEEEEEEEEC--CCchHHHHHHHHhcCcCeEEEEE
Confidence 4555566666 7887766654 211 0 112344556664 68899999999999999998876
No 63
>KOG3411 consensus 40S ribosomal protein S19 [Translation, ribosomal structure and biogenesis]
Probab=21.85 E-value=91 Score=23.72 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=34.3
Q ss_pred eccCcchHHHHHHHHhccCCeeEEEEecCCC-EEEEEeeCCHHHHHHHHH
Q 044120 108 HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQ-TVTVQGTIESDRLLSYLR 156 (232)
Q Consensus 108 ~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~-~v~V~g~~d~~~l~~~l~ 156 (232)
..+|.+..+-.+++|..+..+.-++-+...+ +++=.|.-|.+.|...|+
T Consensus 90 sh~~~as~~i~rkvlQ~Le~~~~ve~hp~gGR~lt~~GqrdldrIa~~i~ 139 (143)
T KOG3411|consen 90 SHFCDASGGIARKVLQALEKMGIVEKHPKGGRRLTEQGQRDLDRIAGQIR 139 (143)
T ss_pred hhhhccccHHHHHHHHHHHhCCceeeCCCCcceeCcccchhHHHHHHHHH
Confidence 4467665555666666666666666666654 566779999999999887
No 64
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=21.76 E-value=2.3e+02 Score=18.11 Aligned_cols=49 Identities=10% Similarity=0.116 Sum_probs=32.8
Q ss_pred eccCcchHHHHHHHHhccCCeeEEEEecCCCEEEEEe--eCCHHHHHHHHHHhcCCcEEEec
Q 044120 108 HIHCAQCEHDLRKKLLKHKGIYSVNADTKAQTVTVQG--TIESDRLLSYLRKKVHKHAEIVT 167 (232)
Q Consensus 108 ~m~C~~C~~ki~~~l~~~~GV~sv~vd~~~~~v~V~g--~~d~~~l~~~l~k~~g~~a~i~~ 167 (232)
|+.|..-.-++.++| ++..-. .+.|.. ......|...++ +.|+...+..
T Consensus 6 G~~CP~P~l~~k~al-~~~~g~---------~l~v~~d~~~s~~~i~~~~~-~~G~~~~~~~ 56 (67)
T cd03421 6 GLACPQPVIKTKKAL-ELEAGG---------EIEVLVDNEVAKENVSRFAE-SRGYEVSVEE 56 (67)
T ss_pred CCCCCHHHHHHHHHH-hcCCCC---------EEEEEEcChhHHHHHHHHHH-HcCCEEEEEe
Confidence 889999989999998 653222 233332 244468888888 7898775443
No 65
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.02 E-value=1.7e+02 Score=20.78 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.4
Q ss_pred hccCCeeEEEEecCCCEEEEEe
Q 044120 123 LKHKGIYSVNADTKAQTVTVQG 144 (232)
Q Consensus 123 ~~~~GV~sv~vd~~~~~v~V~g 144 (232)
...+|++.+++...++++.|.+
T Consensus 37 as~pgis~ieik~E~kkL~v~t 58 (96)
T COG4004 37 ASSPGISRIEIKPENKKLLVNT 58 (96)
T ss_pred EecCCceEEEEecccceEEEec
Confidence 4568999999999999999986
Done!