Query 044122
Match_columns 492
No_of_seqs 299 out of 2491
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 20:22:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044122.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044122hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 6.4E-33 2.2E-37 275.6 22.6 386 38-453 26-433 (451)
2 3o7q_A L-fucose-proton symport 100.0 2.9E-30 9.8E-35 255.5 32.1 352 39-423 25-409 (438)
3 4gc0_A D-xylose-proton symport 100.0 3.2E-28 1.1E-32 244.5 26.3 392 51-461 22-471 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.2E-27 7.6E-32 238.4 25.8 353 57-420 29-447 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.5E-28 5.1E-33 238.1 11.8 343 51-423 10-354 (375)
6 2cfq_A Lactose permease; trans 99.9 3.7E-28 1.3E-32 238.5 5.6 371 59-456 25-403 (417)
7 2xut_A Proton/peptide symporte 99.9 8.4E-23 2.9E-27 206.7 15.9 155 59-221 30-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 1.1E-11 3.6E-16 122.4 14.0 165 55-224 266-433 (451)
9 3o7q_A L-fucose-proton symport 99.1 7E-10 2.4E-14 108.9 15.0 152 59-222 276-430 (438)
10 4aps_A DI-OR tripeptide H+ sym 99.1 4.9E-10 1.7E-14 111.9 13.2 123 291-423 49-174 (491)
11 2cfq_A Lactose permease; trans 99.0 1.2E-09 4.2E-14 106.5 12.6 158 63-229 242-405 (417)
12 2xut_A Proton/peptide symporte 99.0 2.7E-09 9.2E-14 107.4 14.0 155 257-423 12-176 (524)
13 2gfp_A EMRD, multidrug resista 99.0 1.3E-09 4.4E-14 104.7 9.9 124 290-423 29-152 (375)
14 4gc0_A D-xylose-proton symport 98.9 3.9E-09 1.3E-13 105.3 9.2 163 294-456 53-223 (491)
15 2dw3_A Intrinsic membrane prot 29.9 56 0.0019 22.0 3.3 31 202-232 31-62 (77)
16 2b6o_A Aquaporin-0, lens fiber 29.6 38 0.0013 29.7 3.4 19 433-451 202-220 (263)
17 2jln_A MHP1; hydantoin, transp 26.5 2E+02 0.0069 27.7 8.4 24 399-422 359-382 (501)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.4e-33 Score=275.63 Aligned_cols=386 Identities=12% Similarity=0.042 Sum_probs=272.4
Q ss_pred CcchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHH
Q 044122 38 HSSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVI 116 (492)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~ 116 (492)
+++.+..+...+ +..++........+|.+.+| + .+..++|++.+++.++..+ +|++|+++||+ +||++++.
T Consensus 26 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-----g~r~~l~~ 97 (451)
T 1pw4_A 26 RWQIFLGIFFGY-AAYYLVRKNFALAMPYLVEQ-G-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-----NPRVFLPA 97 (451)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTSHHHHHHHTTSS-T-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-h-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-----CchHHHHH
Confidence 344455555555 55566555666677777665 7 9999999999999999887 99999999996 78999999
Q ss_pred HHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHH
Q 044122 117 AGVLGLVSALIVAL----LGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYS 192 (492)
Q Consensus 117 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~ 192 (492)
+.++..++.+++++ +++... +++.+++.+++.+...+...+++.|..+ +++|++.+++.+.+..+|.++++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~~g~~ 173 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAV--MFVLLFLCGWFQGMGWPPCGRTMVHWWS--QKERGGIVSVWNCAHNVGGGIPPL 173 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSH--HHHHHHHHHHHHHHTHHHHHHHHHTTCT--TTHHHHHHHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHH--HHHHHHHHHHHhhhccchHHHHHHHHCC--chhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 887664 5567899999999999999999999984 367999999999999999999999
Q ss_pred hHhHhhhcCC-hHHHHHHHhHhHHHH-HHhhheeeeccCCCccch--h-hhh-------HHHHHHHHHH--HHHhccccc
Q 044122 193 SSGFFVHHLG-HQGALGILAIPPTLL-IVLGFVIYETRATSHHFE--K-KKA-------IESVIFTMKG--MCKSIKLPQ 258 (492)
Q Consensus 193 l~~~l~~~~g-w~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~~~~--~-~~~-------~~~~~~~~~~--~~~~l~~~~ 258 (492)
+++++.+..| ||+.|++.+++.++. ++.++++||++++....+ + ++. .++.+...++ .++.+++|.
T Consensus 174 ~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (451)
T 1pw4_A 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL 253 (451)
T ss_dssp HHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHH
Confidence 9999889998 999999998887776 455567787655422110 0 000 0000001111 356778888
Q ss_pred chhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccC--CCchhhHHHHHHH
Q 044122 259 VWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDY--PYRNLLFFAQLLY 336 (492)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~--~~~~~~~~~~~~~ 336 (492)
++...+..++............+.|..+. +|+++.+.+.+.+...++.+++.++.+++.||+ ++|+.+..+..+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 254 LWYIAIANVFVYLLRYGILDWSPTYLKEV---KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTB---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 88776665555443332222233333332 789999999999999999999999999999999 8888777665544
Q ss_pred HHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HHHHHHHHH
Q 044122 337 GISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDIL-GSLISKWGG 415 (492)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l-g~~i~~~l~ 415 (492)
...++.. + . .......+.......+.+...+........+..+.+|++.+|+++|+.+...++ |..++|.+.
T Consensus 331 ~~~~~~~--~-~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~ 403 (451)
T 1pw4_A 331 VTIATIV--Y-W----MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 403 (451)
T ss_dssp HHHHHHH--T-T----SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--H-H----HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4221111 1 0 000012222222333344444444555567889999999999999999999999 999999999
Q ss_pred HHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHhhc
Q 044122 416 GIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIFLV 453 (492)
Q Consensus 416 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (492)
|.+.++.|+. . .+.+.+++.+++.+.....
T Consensus 404 g~l~~~~g~~-----~---~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 404 GYTVDFFGWD-----G---GFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHSSCSH-----H---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcH-----H---HHHHHHHHHHHHHHHHHHH
Confidence 9999976632 2 3444444444444444433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.98 E-value=2.9e-30 Score=255.51 Aligned_cols=352 Identities=11% Similarity=0.085 Sum_probs=254.9
Q ss_pred cchhhhhHHHhhhcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHH
Q 044122 39 SSFIFGIVLVYGLCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIA 117 (492)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~ 117 (492)
+..+..+...+ +..++......+.+|.+. +++|++..++|++.+++.++..+ +|++|+++||+ +||+.++.+
T Consensus 25 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-----g~r~~l~~~ 97 (438)
T 3o7q_A 25 IIPFALLCSLF-FLWAVANNLNDILLPQFQ-QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-----SYKAGIITG 97 (438)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-----CHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHhHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-----cchHHHHHH
Confidence 33344444444 666666667677777755 45999999999999999999887 99999999996 789999999
Q ss_pred HHHHHHHHHHH---HhcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhH
Q 044122 118 GVLGLVSALIV---ALLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSS 194 (492)
Q Consensus 118 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~ 194 (492)
.++..++.+++ .+++++. .+++.+++.|++.+...+...+++.|..++ ++|++..++.+.+.++|.++++.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMNYT--LFLVGLFIIAAGLGCLETAANPFVTVLGPE--SSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSCS--TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccccHH--HHHHHHHHHHhhHHHhhhhHHHHHHHHcCc--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888 7777654 466788999999999999999999999844 6799999999999999999999999
Q ss_pred hHhh-hcCC-------------------------hHHHHHHHhHhHHHHHHhhhe--eeeccCCCccchhhhhHHHHHHH
Q 044122 195 GFFV-HHLG-------------------------HQGALGILAIPPTLLIVLGFV--IYETRATSHHFEKKKAIESVIFT 246 (492)
Q Consensus 195 ~~l~-~~~g-------------------------w~~~f~i~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~ 246 (492)
+.+. +..+ ||+.|++.+++.++..+..++ .||++++++++++++ +.
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~------~~ 247 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQG------SF 247 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTT------SH
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccc------ch
Confidence 9988 5555 999998887776665433333 344433321111111 11
Q ss_pred HHHHHHhcccccchhhHHHHhhhhhhcccccccceee-eccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 044122 247 MKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYW-ATDPKAGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPY 325 (492)
Q Consensus 247 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~ 325 (492)
.+..++.+++|.++...+..++..............| ..+. +|+++.+.+.+.+...++.+++.++.+++.||+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI---PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2455677889998877766555544333222223333 4443 68999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 044122 326 RNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDI 405 (492)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 405 (492)
|+.+..+.++..+..+. ..+. +.....+ ...+.++..+...+....+..+..|++ ++++.++.. ...
T Consensus 325 ~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 391 (438)
T 3o7q_A 325 HKVLAAYALIAMALCLI-SAFA---------GGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI 391 (438)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHC---------CHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT
T ss_pred hHHHHHHHHHHHHHHHH-HHHc---------CCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH
Confidence 99888776655443221 1111 1111111 123334444555556666778888866 888888776 677
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 044122 406 LGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 406 lg~~i~~~l~g~l~~~~g 423 (492)
+|..++|.+.|++.++.|
T Consensus 392 ~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 392 IGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999887
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.96 E-value=3.2e-28 Score=244.51 Aligned_cols=392 Identities=13% Similarity=0.110 Sum_probs=248.8
Q ss_pred hcccccchhhhhHhhHHhhhhc--------CcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQ--------KVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLG 121 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~ 121 (492)
+..|++.+.++..++.+-++ + +.+.++.|++.+++.++..+ .+++|+++||+ |||+.++++.++.
T Consensus 22 ~~~Gyd~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~-----GRk~~l~~~~~l~ 95 (491)
T 4gc0_A 22 LLFGYDTAVISGTVESLNTV-FVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRF-----GRRDSLKIAAVLF 95 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHH-HTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHH
Confidence 66677777777666654333 3 23456788999999999888 89999999996 8999999999999
Q ss_pred HHHHHHHHhcC----------------CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHH
Q 044122 122 LVSALIVALLG----------------KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGA 185 (492)
Q Consensus 122 ~~~~~~~~~~~----------------~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~ 185 (492)
.++.+++++++ ..+...+++.|+++|+|.+...+....++.|..+ +++|++..++.+.+..+
T Consensus 96 ~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p--~~~rg~~~~~~~~~~~~ 173 (491)
T 4gc0_A 96 FISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAP--AHIRGKLVSFNQFAIIF 173 (491)
T ss_dssp HHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC--GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--HHhhhhhHHhhhhhhhh
Confidence 99999988533 1134457888999999999999999999999984 46799999999999999
Q ss_pred HHHHHHHhHhHhhhc--------CChHHHHHHHhHhHHHHHHhhheeeeccCCCccch---h-hhh----------H---
Q 044122 186 GSLIGYSSSGFFVHH--------LGHQGALGILAIPPTLLIVLGFVIYETRATSHHFE---K-KKA----------I--- 240 (492)
Q Consensus 186 G~~lg~~l~~~l~~~--------~gw~~~f~i~~~~~~~~~~~~~~~~e~~~~~~~~~---~-~~~----------~--- 240 (492)
|.++++.++..+... .+||..+.+..++.++..+..+++||+|+....+. + ++. .
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 174 GQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 999998888766542 34787777777777777777788999875321110 0 000 0
Q ss_pred HHHHHHHHH------HHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 044122 241 ESVIFTMKG------MCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVL 314 (492)
Q Consensus 241 ~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 314 (492)
.+.++.... .....+.+.........++.+. .......+|.....+..+.+.........+..+..+++.+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQF---VGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTV 330 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHH---hhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHH
Confidence 000000000 0111122222222222222111 1111122222222222466666666667778888999999
Q ss_pred HHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHH-HHHHHhcCCCChh
Q 044122 315 IYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPM-IVLSTRLCPRGIE 393 (492)
Q Consensus 315 ~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 393 (492)
+.+++.||+|+|+.+..+.....+..+....... . .......+....+..........|. ..+.+|..|.+.|
T Consensus 331 ~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R 404 (491)
T 4gc0_A 331 LAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-----T-QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 404 (491)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH-----T-TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTH
T ss_pred HHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh-----c-ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHH
Confidence 9999999999999988776665543322111111 0 1111122222222222333333343 4677999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHH-hhcCCCCcccc
Q 044122 394 GTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLI-FLVPKGNHSNE 461 (492)
Q Consensus 394 g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 461 (492)
+++.|+.+...+++..+++.+.+.+.+...... .+. ....+.+.+++++++.++. +++||+|+++.
T Consensus 405 ~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~-~~~-~~~~~~i~~~~~~~~~i~~~~~~PETkg~tL 471 (491)
T 4gc0_A 405 GKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA-HFH-NGFSYWIYGCMGVLAALFMWKFVPETKGKTL 471 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH-HHT-TCHHHHHHHHHHHHHHHHHHHHCCCCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh-hhHHHHHHHHHHHHHHHHHHheecCCCCCCH
Confidence 999999999999999999998887765432110 000 1123344445555555544 58999998865
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.96 E-value=2.2e-27 Score=238.39 Aligned_cols=353 Identities=13% Similarity=0.066 Sum_probs=224.0
Q ss_pred chhhhhHhhHHhhhh-----cCcChHHHHHHHHHhhhhhhh-hhHHhhhccc-cccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 57 GSFFKVVTDYYWKDV-----QKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDA-FPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 57 ~~~~~~~~~~~~~~~-----~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr-~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
.......++.|++++ +|.+..+.+++.+++.++..+ ++++|+++|| + +||+.++.+.++..++.++++
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-----g~r~~~~~~~~~~~~~~~~~~ 103 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-----GARPAVFWGGVLIMLGHIVLA 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cchHHHHHHHHHHHHHHHHHH
Confidence 334445667777776 999999999999999999887 9999999999 6 789999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++... +++.+++.+++.+...+...+++.|..+++++.|+...++++.+.++|..++|.+++++.++.|||+.|++
T Consensus 104 ~~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 104 LPFGASA--LFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp SCCSTTH--HHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HhhhHHH--HHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9887654 55678899999999999999999999866444578888889999999999999999999999999999999
Q ss_pred HhHhHHHHHHhhhee-eeccCC----CccchhhhhHHH-HHH--------------------------------------
Q 044122 210 LAIPPTLLIVLGFVI-YETRAT----SHHFEKKKAIES-VIF-------------------------------------- 245 (492)
Q Consensus 210 ~~~~~~~~~~~~~~~-~e~~~~----~~~~~~~~~~~~-~~~-------------------------------------- 245 (492)
.++..++..+..++. ++..++ +.+..++++.++ .+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (491)
T 4aps_A 182 AAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIP 261 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHH
Confidence 877666554333322 221111 111000110000 000
Q ss_pred ------HHHHHH--Hhccccc--chhhHHHHhhhhhhcccccccceeeeccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 044122 246 ------TMKGMC--KSIKLPQ--VWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPAFSQEFVGVIYALGAVASIIGVLI 315 (492)
Q Consensus 246 ------~~~~~~--~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~ 315 (492)
..++.. ...+++. .+...+..++..............+..+. .+.+....+.+.....++.+++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (491)
T 4aps_A 262 VFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAER---VDSSWFPVSWFQSLNPLFIMLYTPF 338 (491)
T ss_dssp HHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHS---CCCSSSCSGGGTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH---hccCccCHHHHhccchHHHHHHHHH
Confidence 000000 0011111 11112122222221222222222333332 3444345566667778888888999
Q ss_pred HHHHHccCCCchhhH-----HHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCC
Q 044122 316 YHKTLKDYPYRNLLF-----FAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPR 390 (492)
Q Consensus 316 ~~~l~~r~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (492)
.+++.||+++|+... .+..+..+..+.. ...............+.......+.++..+....+...+..+..|+
T Consensus 339 ~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~ 417 (491)
T 4aps_A 339 FAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLM-AIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK 417 (491)
T ss_dssp HHHHHHHTTTC---CHHHHHHHHHHHHHHHTTT-HHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT
T ss_pred HHHHHHHHhccCCCchHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 999999999886544 3333333322211 1111000000001112222333444455555566677888999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044122 391 GIEGTFFALLMCIDILGSLISKWGGGIVLH 420 (492)
Q Consensus 391 ~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~ 420 (492)
+.+|+++|+.+...++|..+++.+.+.+.+
T Consensus 418 ~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~ 447 (491)
T 4aps_A 418 AFNSQMMSMWFLSSSVGSALNAQLVTLYNA 447 (491)
T ss_dssp TCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999887754
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.95 E-value=1.5e-28 Score=238.06 Aligned_cols=343 Identities=13% Similarity=0.079 Sum_probs=244.0
Q ss_pred hcccccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHH
Q 044122 51 LCQGFSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVA 129 (492)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~ 129 (492)
+..++......+.+|.+.++ +|.+..+++++.+++.++..+ +|++|+++||+ +||+.++.+.++..++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~ 83 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-----GRRPVILVGMSIFMLATLVAV 83 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-----CCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHH
Confidence 44555556666677776554 999999999999999999877 99999999996 678888899999999988888
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHH
Q 044122 130 LLGKLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGI 209 (492)
Q Consensus 130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i 209 (492)
++++. ..++..+++.+++.+...+...+++.|..++ ++|++.+++.+.+..+|..+++.+++++.++.|||+.|++
T Consensus 84 ~~~~~--~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 84 TTSSL--TVLIAASAMQGMGTGVGGVMARTLPRDLYER--TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HhccH--HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 87754 3466778999999999999999999998843 6799999999999999999999999999998999999999
Q ss_pred HhHhHHHHHH-hhheeeeccCCCccchhhhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCC
Q 044122 210 LAIPPTLLIV-LGFVIYETRATSHHFEKKKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPK 288 (492)
Q Consensus 210 ~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (492)
.+++.++..+ ..+++||++++++++++. .++.++.+|+|.++...+..++............+.+..+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 229 (375)
T 2gfp_A 160 LLVLCAGVTFSMARWMPETRPVDAPRTRL---------LTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV- 229 (375)
T ss_dssp HHHHHHHHHCCCCCSSCCCSTTTCCCCCT---------TTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-
T ss_pred HHHHHHHHHHHHHHHCcccCCCCcccccH---------HHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888777644 556778765543321111 02234455677777666555544433222222222232222
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHH
Q 044122 289 AGPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCV 368 (492)
Q Consensus 289 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (492)
+|+++.+.+.+.....++.+++.++.+++.||.++ ....+........+.......... .+.+..+....+
T Consensus 230 --~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l 300 (375)
T 2gfp_A 230 --LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST--LMWQSVICCLLAGLLMWIPDWFGV-----MNVWTLLVPAAL 300 (375)
T ss_dssp --HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH--HHHHHHHHHHHTSSSSSHHHHHHH-----HHHHHHHHHHHH
T ss_pred --hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcc-----ccHHHHHHHHHH
Confidence 67888999999999999999999999999998775 222222221221111111111000 011122222334
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 369 SHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
.++..+........+..+..| +++|++.|+.+...++|..+++.+.|.+.+..+
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~ 354 (375)
T 2gfp_A 301 FFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ 354 (375)
T ss_dssp HHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 444555556666777888888 899999999999999999999999999987654
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=3.7e-28 Score=238.53 Aligned_cols=371 Identities=12% Similarity=0.059 Sum_probs=212.0
Q ss_pred hhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHH---HHHHhcCCc
Q 044122 59 FFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSA---LIVALLGKL 134 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~---~~~~~~~~~ 134 (492)
...+.+|.++++++|.|+.++|++.+++.++..+ +|++|+++||+ +||+.++.+.++..++. ....+.+..
T Consensus 25 ~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-----Grr~~l~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2cfq_A 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-----GLRKYLLWIITGMLVMFAPFFIFIFGPLL 99 (417)
T ss_dssp HHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-----TTCCHHHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678888887999999999999999998877 99999999996 56777776665554321 111111100
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhH
Q 044122 135 PIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPP 214 (492)
Q Consensus 135 ~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~ 214 (492)
. ...+..+.+.+++.+...........++.++.+++++...+..+.+.++|..++|.+++++.+ .+||..|++.++..
T Consensus 100 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~ 177 (417)
T 2cfq_A 100 Q-YNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp H-TTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTT
T ss_pred H-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHH
Confidence 0 000111222222222222222222222222222235666666666778899999999998877 58999998877765
Q ss_pred HHHHHhhheeeeccCC-Cccchh-hhhHHHHHHHHHHHHHhcccccchhhHHHHhhhhhhcccccccceeeeccCCCCCC
Q 044122 215 TLLIVLGFVIYETRAT-SHHFEK-KKAIESVIFTMKGMCKSIKLPQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPA 292 (492)
Q Consensus 215 ~~~~~~~~~~~e~~~~-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 292 (492)
++..+..++.+|++++ .++.++ +++.+ +...++.++.+++|.++...+..+.............+.|..+..+..+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (417)
T 2cfq_A 178 LILAVLLFFAKTDAPSSATVANAVGANHS--AFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGE 255 (417)
T ss_dssp TTHHHHSCSSCCCCSCSSCSSSSSSSCCC--CCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHcCcccccccccccccccccc--cccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5444444444433211 100000 00000 0011345567788887766544333222111111112222222211112
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHH
Q 044122 293 FSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIV 372 (492)
Q Consensus 293 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (492)
.+....+...++..++.+++.++.+++.||+++|+.+..+..+..+..+ .+.. .++....+....+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~---~~~~-------~~~~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRII---GSSF-------ATSALEVVILKTLHMFE 325 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHTT-------CCSHHHHHHHTTHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH---HHHH-------hccHHHHHHHHHHHHHH
Confidence 3345667777788888899999999999999999987766554443211 1100 11212222222233333
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHHHHHHHh
Q 044122 373 SRLRWIPMIVLSTRLCPRGIEGTFFAL-LMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFATLGLIF 451 (492)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~g~~~g~-~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (492)
......+...+..|..|++.+|+++++ +++..++|..++|.++|++.+..|+ ...+.+.+++.+++.+..+
T Consensus 326 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~--------~~~f~~~~~~~l~~~~~~~ 397 (417)
T 2cfq_A 326 VPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF--------QGAYLVLGLVALGFTLISV 397 (417)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH--------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHH
Confidence 334444556788999999999999998 4888889999999999999987552 2244555555555555544
Q ss_pred -hcCCC
Q 044122 452 -LVPKG 456 (492)
Q Consensus 452 -~~~~~ 456 (492)
..||+
T Consensus 398 ~~~~~~ 403 (417)
T 2cfq_A 398 FTLSGP 403 (417)
T ss_dssp TSSCCS
T ss_pred hhhcCC
Confidence 34443
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=8.4e-23 Score=206.75 Aligned_cols=155 Identities=12% Similarity=0.106 Sum_probs=127.3
Q ss_pred hhhhHhhHHhhhhcC------cChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhc
Q 044122 59 FFKVVTDYYWKDVQK------VQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALL 131 (492)
Q Consensus 59 ~~~~~~~~~~~~~~g------~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~ 131 (492)
.....++.++++++| .+..+++++.+++.++..+ .+++|+++||+ .+||+.+..+.++..++.++++++
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~----~g~r~~~~~~~~~~~~~~~~~~~~ 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRF----FGKYNTILWLSLIYCVGHAFLAIF 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTS----SCSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHh
Confidence 344567778887799 9999999999999998877 99999999994 167888888999999998888888
Q ss_pred C-CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchH---HHHHHHHHHHHHHHHHhHhHhhhcCChHHHH
Q 044122 132 G-KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQ---SLCAFCSGAGSLIGYSSSGFFVHHLGHQGAL 207 (492)
Q Consensus 132 ~-~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~---~~~~~~~~~G~~lg~~l~~~l~~~~gw~~~f 207 (492)
+ +.. .+++.+++.+++.+...+...+++.|..++ ++|++.. ++.+.+.++|.+++|.+++++.+..|||+.|
T Consensus 106 ~~~~~--~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f 181 (524)
T 2xut_A 106 EHSVQ--GFYTGLFLIALGSGGIKPLVSSFMGDQFDQ--SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAF 181 (524)
T ss_dssp SSCHH--HHHHHHHHHHHHHHTTHHHHHHHHHHTCST--TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHH
T ss_pred cccHH--HHHHHHHHHHHhccccchhHHHHHHHHcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 7 544 355678889999998888899999999854 4565444 4488999999999999999999999999999
Q ss_pred HHHhHhHHHHHHhh
Q 044122 208 GILAIPPTLLIVLG 221 (492)
Q Consensus 208 ~i~~~~~~~~~~~~ 221 (492)
++.+++.++..+..
T Consensus 182 ~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 182 GIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888766654433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.33 E-value=1.1e-11 Score=122.45 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=123.6
Q ss_pred ccchhhhhHhhHHhhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHH-HHHHHHHhcC
Q 044122 55 FSGSFFKVVTDYYWKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGL-VSALIVALLG 132 (492)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~-~~~~~~~~~~ 132 (492)
.........+|.++++.+|.+..+.+++.+...++..+ .++.|+++||+. + +||+.+..+..+.. ++.+++.+.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVF--R-GNRGATGVFFMTLVTIATIVYWMNP 342 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--T-TCHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-CCchhHHHHHHHHHHHHHHHHHHhc
Confidence 33344556778888887999999999999998888777 899999999950 0 46666666665555 6666666655
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHH-HHHHHHHhHhHhhhcCChHHHHHHHh
Q 044122 133 KLPIALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGA-GSLIGYSSSGFFVHHLGHQGALGILA 211 (492)
Q Consensus 133 ~~~~~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~-G~~lg~~l~~~l~~~~gw~~~f~i~~ 211 (492)
+..........++.+++.+...+...+++.|..++ ++|++..++.+....+ |..+++.+.|++.++.||+..|++.+
T Consensus 343 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~ 420 (451)
T 1pw4_A 343 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMI 420 (451)
T ss_dssp TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 43333444555666777666666677788888743 5689999999999999 99999999999999999999999988
Q ss_pred HhHHHHHHhhhee
Q 044122 212 IPPTLLIVLGFVI 224 (492)
Q Consensus 212 ~~~~~~~~~~~~~ 224 (492)
++.++..+..+++
T Consensus 421 ~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 421 GGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777764444433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.12 E-value=7e-10 Score=108.92 Aligned_cols=152 Identities=14% Similarity=0.044 Sum_probs=112.8
Q ss_pred hhhhHhhHH-hhhhcCcChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchH
Q 044122 59 FFKVVTDYY-WKDVQKVQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPI 136 (492)
Q Consensus 59 ~~~~~~~~~-~~~~~g~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~ 136 (492)
.....+|.| +++.+|.+..+.+++.+...+...+ .++.|+++||+ +||+.+..+.++..++.+++.+.++...
T Consensus 276 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-----APHKVLAAYALIAMALCLISAFAGGHVG 350 (438)
T ss_dssp HHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 344567778 8887799999999999998887777 89999999996 6788888888888888777777765332
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHHHHHHHHHHHHHHHHhHhHhhhcCC-hHHHHHHHhHhHH
Q 044122 137 ALALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSLCAFCSGAGSLIGYSSSGFFVHHLG-HQGALGILAIPPT 215 (492)
Q Consensus 137 ~~~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~~~~~~~~G~~lg~~l~~~l~~~~g-w~~~f~i~~~~~~ 215 (492)
+...++.+++.+...+...++..|..+++ ++...++.. ...+|..++|.+.|++.+..| ++..|++.++..+
T Consensus 351 ---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 351 ---LIALTLCSAFMSIQYPTIFSLGIKNLGQD---TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp ---HHHHHHHHHHHTTHHHHHHHHHHSSCGGG---HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHhhcccc---ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22335566676666667777766766432 566666655 566999999999999999988 9988887665554
Q ss_pred HHHHhhh
Q 044122 216 LLIVLGF 222 (492)
Q Consensus 216 ~~~~~~~ 222 (492)
+..+..+
T Consensus 424 ~~~~~~~ 430 (438)
T 3o7q_A 424 VIFIFAR 430 (438)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 4433333
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.10 E-value=4.9e-10 Score=111.90 Aligned_cols=123 Identities=13% Similarity=0.022 Sum_probs=97.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 291 PAFSQEFVGVIYALGAVASIIGVLIYHKTLKD-YPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 291 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
+|++..+.+++.+...++..++.++.|++.|| +|+|+.+..+.++..+..+. ... .++....+....+.
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~l~ 118 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV---LAL-------PFGASALFGSIILI 118 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH---HHS-------CCSTTHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH---HHH-------hhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999 89999998887666543322 111 12223333344455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGI--EGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
++..+....+...++.|.+|+++ |+.++++++...++|..++|.+++.+.++.|
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 174 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG 174 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 66666667777888999999988 7888898999999999999999999998765
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.04 E-value=1.2e-09 Score=106.54 Aligned_cols=158 Identities=9% Similarity=-0.016 Sum_probs=108.2
Q ss_pred HhhHHhhhhcC---cChHHHHHHHHHhhhhhhh-hhHHhhhccccccCCCCchhHHHHHHHHHHHHHHHHHhcCCchHHH
Q 044122 63 VTDYYWKDVQK---VQPSTVQIYIGLYYLPWVM-KPIWGIFTDAFPIKGYHRRPYFVIAGVLGLVSALIVALLGKLPIAL 138 (492)
Q Consensus 63 ~~~~~~~~~~g---~s~~~~g~~~s~~~l~~~~-~~~~G~lsDr~~~~g~~Rk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 138 (492)
.+|.++++.++ .+..+.++..++..+...+ .++.|+++||+ +||+.+..+.++.+++.+..++.++.. .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-----g~~~~l~~~~~~~~~~~~~~~~~~~~~--~ 314 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-----GGKNALLLAGTIMSVRIIGSSFATSAL--E 314 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHHHHHHHHHHHHTTCCSHH--H
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cHHHHHHHHHHHHHHHHHHHHHhccHH--H
Confidence 35666665444 2345567766666666555 88999999997 677788778777777766666665432 2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhccccccCcccchHHH-HHHHHHHHHHHHHHhHhHhhhcCChHHHHHHHhHhHHHH
Q 044122 139 ALTCLIGITGGMAIADVVIDACIARNSIETRALAPDMQSL-CAFCSGAGSLIGYSSSGFFVHHLGHQGALGILAIPPTLL 217 (492)
Q Consensus 139 ~~~~~~l~~~g~~~~~~~~~a~~~~~~~~~~~~r~~~~~~-~~~~~~~G~~lg~~l~~~l~~~~gw~~~f~i~~~~~~~~ 217 (492)
++....+.+++.+...+...+++.|..++ +.|++.+++ ++....+|..++|.++|++.++.|++..|.+.+++.++.
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~ 392 (417)
T 2cfq_A 315 VVILKTLHMFEVPFLLVGCFKYITSQFEV--RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF 392 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 33333444555544444556677777743 568888887 467788999999999999999889999998888777766
Q ss_pred HH-hhheeeeccC
Q 044122 218 IV-LGFVIYETRA 229 (492)
Q Consensus 218 ~~-~~~~~~e~~~ 229 (492)
.+ .++..||+++
T Consensus 393 ~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 393 TLISVFTLSGPGP 405 (417)
T ss_dssp HHHHTTSSCCSCT
T ss_pred HHHHHhhhcCCCc
Confidence 43 4455665443
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.01 E-value=2.7e-09 Score=107.43 Aligned_cols=155 Identities=6% Similarity=-0.116 Sum_probs=105.4
Q ss_pred ccchhhHHHHhhhhhhcccccccceeeeccCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCchhh
Q 044122 257 PQVWKPSLYMFLSFAVSISTHEGQFYWATDPKAGPA------FSQEFVGVIYALGAVASIIGVLIYHKTLKDY-PYRNLL 329 (492)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~ 329 (492)
|.++...+..++..............|..+. +| +++.+.+++.+...++..++.++.|++.||+ |+|+.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 12 RQIPYIIASEACERFSFYGMRNILTPFLMTA---LLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHS---CSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4555555444444443322222233333332 56 8999999999999999999999999999999 999998
Q ss_pred HHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH---HHHHHHH
Q 044122 330 FFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFAL---LMCIDIL 406 (492)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~l 406 (492)
..+.++..+..+.. .+. ..+....+....+.++..+...++..+++.+.+|+++|++..+. .+...++
T Consensus 89 ~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 159 (524)
T 2xut_A 89 LWLSLIYCVGHAFL-AIF--------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINF 159 (524)
T ss_dssp HHHHHHHHHHHHHH-HHT--------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHh--------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 88766655433221 110 01222333334455666666677778889999999998765555 8899999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 044122 407 GSLISKWGGGIVLHLLH 423 (492)
Q Consensus 407 g~~i~~~l~g~l~~~~g 423 (492)
|..++|.+++.+.+..|
T Consensus 160 g~~~g~~~~~~l~~~~g 176 (524)
T 2xut_A 160 GSFFASLSMPLLLKNFG 176 (524)
T ss_dssp HHHHHHHTSTHHHHTSC
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999988654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.98 E-value=1.3e-09 Score=104.73 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=97.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhhhcCCCCcchhhhhhHHH
Q 044122 290 GPAFSQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNLALGIPDSFFVITEQCVS 369 (492)
Q Consensus 290 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (492)
++|.++.+.+++.+...++..++.++.|++.||+|+|+.+..+.....+..+... +.. +....+....+.
T Consensus 29 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~---------~~~~l~~~~~l~ 98 (375)
T 2gfp_A 29 DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TTS---------SLTVLIAASAMQ 98 (375)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HHH---------HHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-Hhc---------cHHHHHHHHHHH
Confidence 3799999999999999999999999999999999999999988776665433221 111 112233333455
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044122 370 HIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLH 423 (492)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g 423 (492)
+...+........++.|..|+++|++.+++.+....+|..++|.+++++.++.+
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 152 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 555566666777888999999999999999999999999999999999877654
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.87 E-value=3.9e-09 Score=105.27 Aligned_cols=163 Identities=16% Similarity=0.128 Sum_probs=107.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchhhHHHHHHHHHhhhhHHHHHHhhhh-----hc---CCCCcchhhhh
Q 044122 294 SQEFVGVIYALGAVASIIGVLIYHKTLKDYPYRNLLFFAQLLYGISGMLDLIFILRWNL-----AL---GIPDSFFVITE 365 (492)
Q Consensus 294 ~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~ 365 (492)
+..+.|++.+...+|.++|+++.|++.||+|||+.+.++.++..+..+........... .. ..++....+..
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 45567888888999999999999999999999999998877776654332110000000 00 00112223333
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhHHHHHHHHHHHHH
Q 044122 366 QCVSHIVSRLRWIPMIVLSTRLCPRGIEGTFFALLMCIDILGSLISKWGGGIVLHLLHVTRTDYRNLWLVILIRNVLRFA 445 (492)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~i~~~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 445 (492)
-.+.++..+........+++|..|+++|+...++.+....+|..++..++..+....+............+.+..+..++
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL 212 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh
Confidence 44556666666777778899999999999999999999999988888888777665443322223333344444445555
Q ss_pred HHHHHhhcCCC
Q 044122 446 TLGLIFLVPKG 456 (492)
Q Consensus 446 ~~~~~~~~~~~ 456 (492)
.++..+..||.
T Consensus 213 ~~~~~~~~peS 223 (491)
T 4gc0_A 213 FLMLLYTVPES 223 (491)
T ss_dssp HHHHGGGSCCC
T ss_pred hhhhhhcCCCC
Confidence 55555678875
No 15
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=29.85 E-value=56 Score=22.00 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=16.2
Q ss_pred ChHHHHHHHhHhHHHH-HHhhheeeeccCCCc
Q 044122 202 GHQGALGILAIPPTLL-IVLGFVIYETRATSH 232 (492)
Q Consensus 202 gw~~~f~i~~~~~~~~-~~~~~~~~e~~~~~~ 232 (492)
||-.++.+...+.++. -.+-..+||+.++.+
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 4444444443333333 345567898766544
No 16
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=29.61 E-value=38 Score=29.67 Aligned_cols=19 Identities=11% Similarity=-0.169 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 044122 433 WLVILIRNVLRFATLGLIF 451 (492)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~ 451 (492)
|...+...+-++++..++.
T Consensus 202 Wvy~vgP~~Ga~la~~~y~ 220 (263)
T 2b6o_A 202 WVYWVGPVIGAGLGSLLYD 220 (263)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHH
Confidence 4333333333444444443
No 17
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=26.48 E-value=2e+02 Score=27.74 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 044122 399 LLMCIDILGSLISKWGGGIVLHLL 422 (492)
Q Consensus 399 ~~~~~~~lg~~i~~~l~g~l~~~~ 422 (492)
+.++...+|..++|..+-.+.|++
T Consensus 359 f~~FL~~lg~~l~P~~gI~l~Dy~ 382 (501)
T 2jln_A 359 LNTFLNLLASALGPLAGIMISDYF 382 (501)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666776666666665
Done!