BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044123
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 10/89 (11%)
Query: 37 EGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNARD 96
E EV K ++ F+YTG P L K L AA D Y +E L+ +C + + +
Sbjct: 222 EPEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMC--------EDALCSN 271
Query: 97 FQSSNAIDFLRIGYNYQLDELRDAALNFI 125
NA + L + + D+L+ A++FI
Sbjct: 272 LSVENAAEILILADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 37 EGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSNA 94
E EV K ++ F+YTG P L K L AA D Y +E L+ +C + ++ NA
Sbjct: 73 EPEVFKEMMCFIYTGKAPN--LDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 128
>pdb|3UBW|A Chain A, Complex Of 14-3-3 Isoform Epsilon, A Mlf1 Phosphopeptide
And A Small Fragment Hit From A Fbdd Screen
Length = 261
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 14 DCLDGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGD 70
D LD L+P ++TG +G+ + L +F TG+ +E + +V AA D
Sbjct: 129 DVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFA-TGNDRKEAAENSLVAYKAASD 184
>pdb|2BR9|A Chain A, 14-3-3 Protein Epsilon (Human) Complexed To Peptide
Length = 234
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 14 DCLDGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGD 70
D LD L+P ++TG +G+ + L +F TG+ +E + +V AA D
Sbjct: 103 DVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFA-TGNDRKEAAENSLVAYKAASD 158
>pdb|3UAL|A Chain A, Crystal Structure Of 14-3-3 Epsilon With Mlf1 Peptide
Length = 232
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 14 DCLDGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGD 70
D LD L+P ++TG +G+ + L +F TG+ +E + +V AA D
Sbjct: 102 DVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFA-TGNDRKEAAENSLVAYKAASD 157
>pdb|7ODC|A Chain A, Crystal Structure Ornithine Decarboxylase From Mouse,
Truncated 37 Residues From The C-Terminus, To 1.6
Angstrom Resolution
Length = 424
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 13 KDCLDGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPR 55
KD LD K+ +SS+ VA+ G++LK + +L +LPR
Sbjct: 21 KDILDQKINEVSSSDDKDAFYVADLGDILKKHLRWL--KALPR 61
>pdb|2PD3|A Chain A, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD3|B Chain B, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD3|C Chain C, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD3|D Chain D, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD4|A Chain A, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD4|B Chain B, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD4|C Chain C, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
pdb|2PD4|D Chain D, Crystal Structure Of The Helicobacter Pylori Enoyl-Acyl
Carrier Protein Reductase In Complex With
Hydroxydiphenyl Ether Compounds, Triclosan And Diclosan
Length = 275
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 13 KDCLDGKLLPISSTGGMTTMEVA-----EEGEVLKALVD----FLYTGSLPREKLQKH-- 61
K+ L+G LL S + T ME++ E LK L++ L L K H
Sbjct: 97 KEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYN 156
Query: 62 VVGLFAAGDNYEIEYLR-EVCLHHMPASFQSSNA-RDFQSSNAIDFLRI 108
V+GL A + YL ++ HH+ + S+ R SS DF I
Sbjct: 157 VMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMI 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,336,115
Number of Sequences: 62578
Number of extensions: 165641
Number of successful extensions: 400
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 13
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)