Query 044123
Match_columns 148
No_of_seqs 128 out of 1190
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 11:41:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044123.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044123hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02790 Kelch-like protein; P 100.0 1.6E-28 3.4E-33 195.1 8.7 127 2-143 37-168 (480)
2 PHA02713 hypothetical protein; 99.9 1.5E-26 3.2E-31 186.6 10.6 126 3-144 43-170 (557)
3 KOG4441 Proteins containing BT 99.9 2.6E-26 5.7E-31 185.1 8.6 128 3-144 53-181 (571)
4 PHA03098 kelch-like protein; P 99.9 3.4E-26 7.4E-31 183.8 9.2 124 3-144 28-152 (534)
5 KOG4350 Uncharacterized conser 99.9 3.8E-22 8.2E-27 151.3 5.8 131 2-144 60-192 (620)
6 KOG2075 Topoisomerase TOP1-int 99.7 6.2E-17 1.3E-21 124.9 8.7 127 3-142 136-263 (521)
7 KOG4591 Uncharacterized conser 99.7 3.8E-17 8.2E-22 113.9 6.1 125 3-142 86-210 (280)
8 KOG4682 Uncharacterized conser 99.7 2.7E-16 5.8E-21 119.3 8.7 125 7-143 89-216 (488)
9 KOG0783 Uncharacterized conser 99.6 1.7E-15 3.6E-20 123.4 7.5 127 2-140 727-858 (1267)
10 PF00651 BTB: BTB/POZ domain; 99.6 2.8E-16 6.1E-21 101.6 2.1 80 3-88 28-110 (111)
11 smart00225 BTB Broad-Complex, 99.5 6.8E-15 1.5E-19 90.7 4.5 74 3-82 16-90 (90)
12 KOG0511 Ankyrin repeat protein 98.9 1.5E-08 3.2E-13 77.3 8.6 127 7-145 311-446 (516)
13 KOG1987 Speckle-type POZ prote 98.4 3.8E-07 8.1E-12 68.7 4.8 124 3-140 117-246 (297)
14 KOG2838 Uncharacterized conser 98.1 1.3E-06 2.9E-11 64.3 2.1 89 3-93 268-392 (401)
15 PF07707 BACK: BTB And C-termi 98.0 7.3E-06 1.6E-10 51.9 4.0 43 102-144 1-43 (103)
16 KOG2716 Polymerase delta-inter 97.9 6.4E-05 1.4E-09 54.5 6.8 79 7-88 25-104 (230)
17 smart00875 BACK BTB And C-term 97.6 8.1E-05 1.8E-09 46.6 3.2 43 102-144 1-43 (101)
18 KOG3473 RNA polymerase II tran 97.5 0.00028 6.1E-09 44.1 5.1 66 6-73 36-111 (112)
19 smart00512 Skp1 Found in Skp1 96.7 0.0045 9.7E-08 39.5 4.8 65 6-74 21-104 (104)
20 PF11822 DUF3342: Domain of un 96.6 0.0027 5.8E-08 48.2 3.7 77 9-90 27-105 (317)
21 KOG0783 Uncharacterized conser 96.6 0.0038 8.1E-08 52.8 4.6 49 3-53 575-634 (1267)
22 KOG1724 SCF ubiquitin ligase, 96.3 0.027 5.8E-07 38.9 7.2 82 7-93 25-131 (162)
23 KOG1665 AFH1-interacting prote 95.7 0.024 5.2E-07 41.1 4.7 70 11-83 35-105 (302)
24 KOG2838 Uncharacterized conser 95.7 0.034 7.3E-07 41.6 5.5 71 3-75 147-219 (401)
25 KOG1778 CREB binding protein/P 95.6 0.014 2.9E-07 44.6 3.2 127 4-143 44-172 (319)
26 PF02214 BTB_2: BTB/POZ domain 95.3 0.0058 1.2E-07 38.1 0.4 69 7-81 20-94 (94)
27 PF01466 Skp1: Skp1 family, di 94.9 0.064 1.4E-06 32.3 4.2 36 58-93 12-47 (78)
28 COG5201 SKP1 SCF ubiquitin lig 93.8 0.41 8.9E-06 31.8 6.4 83 6-93 21-126 (158)
29 KOG2714 SETA binding protein S 93.8 0.16 3.5E-06 40.2 5.2 67 8-79 34-102 (465)
30 PF03931 Skp1_POZ: Skp1 family 93.5 0.18 3.8E-06 28.9 3.9 38 6-49 20-58 (62)
31 KOG2075 Topoisomerase TOP1-int 82.8 1.1 2.4E-05 36.1 2.5 39 102-143 190-228 (521)
32 PF11822 DUF3342: Domain of un 81.9 0.63 1.4E-05 35.6 0.8 41 88-136 71-111 (317)
33 KOG2715 Uncharacterized conser 81.0 2.6 5.6E-05 29.4 3.5 57 29-89 66-122 (210)
34 PF00651 BTB: BTB/POZ domain; 79.7 3.6 7.7E-05 25.6 3.7 27 102-128 84-110 (111)
35 PF07707 BACK: BTB And C-termi 76.4 2.3 5.1E-05 26.2 2.1 68 63-130 2-75 (103)
36 KOG4682 Uncharacterized conser 69.0 4.2 9.1E-05 32.3 2.3 32 58-89 171-202 (488)
37 smart00875 BACK BTB And C-term 68.0 4.6 0.0001 24.5 2.0 67 63-129 2-74 (101)
38 KOG2723 Uncharacterized conser 64.8 21 0.00045 26.1 5.1 49 33-83 56-104 (221)
39 PHA02790 Kelch-like protein; P 63.3 11 0.00025 30.4 3.9 34 58-91 121-154 (480)
40 PHA03098 kelch-like protein; P 62.7 6.8 0.00015 31.9 2.6 33 58-90 106-138 (534)
41 KOG0511 Ankyrin repeat protein 56.0 32 0.00069 27.4 4.9 49 99-147 388-436 (516)
42 KOG3840 Uncharaterized conserv 48.2 14 0.0003 28.5 1.9 47 27-76 139-186 (438)
43 PF07035 Mic1: Colon cancer-as 48.0 92 0.002 21.7 8.0 97 41-139 45-160 (167)
44 PHA02713 hypothetical protein; 45.1 19 0.0004 29.9 2.4 33 89-129 91-123 (557)
45 KOG1077 Vesicle coat complex A 44.0 28 0.00061 30.0 3.2 39 33-73 398-436 (938)
46 PF06887 DUF1265: Protein of u 40.6 61 0.0013 17.5 3.2 31 102-132 13-44 (48)
47 KOG4350 Uncharacterized conser 27.0 42 0.00091 27.1 1.6 73 9-88 93-176 (620)
48 PF05225 HTH_psq: helix-turn-h 23.9 86 0.0019 16.5 2.0 29 38-76 2-30 (45)
49 PF06404 PSK: Phytosulfokine p 23.7 26 0.00057 21.3 0.0 9 43-51 69-77 (81)
50 KOG4441 Proteins containing BT 23.2 81 0.0018 26.4 2.7 32 89-128 102-133 (571)
51 TIGR01964 chpXY CO2 hydration 23.0 3.7E+02 0.008 21.0 5.9 69 69-146 103-172 (367)
52 PF10216 ChpXY: CO2 hydration 22.2 3.8E+02 0.0083 20.8 5.8 68 69-145 97-165 (353)
53 PF07632 DUF1593: Protein of u 20.8 47 0.001 24.9 0.8 26 28-53 2-28 (260)
54 PF10537 WAC_Acf1_DNA_bd: ATP- 20.3 1.8E+02 0.0038 18.5 3.3 28 102-129 69-96 (102)
No 1
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=1.6e-28 Score=195.13 Aligned_cols=127 Identities=20% Similarity=0.295 Sum_probs=118.6
Q ss_pred CceeecCCHHHHHhh-cCCCCCCCCCCCeee--cccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHH
Q 044123 2 GRIHAARSSILKDCL-DGKLLPISSTGGMTT--MEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLR 78 (148)
Q Consensus 2 ~~vLaa~S~~F~~~f-~~~~e~~~~~~~i~l--~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~ 78 (148)
.+||||.|+||++|| ++++|+++ +|.+ .+++ +++++.+|+|+|||++.+ +.+++.+++.+|+.++++.++
T Consensus 37 R~VLAa~S~YFraMF~~~~~Es~~---~v~~~~~~v~--~~~l~~lldy~YTg~l~i--t~~nV~~ll~aA~~Lqi~~v~ 109 (480)
T PHA02790 37 STILKKLSPYFRTHLRQKYTKNKD---PVTRVCLDLD--IHSLTSIVIYSYTGKVYI--DSHNVVNLLRASILTSVEFII 109 (480)
T ss_pred hhhhhhcCHHHHHHhcCCcccccc---ceEEEecCcC--HHHHHHHHHhheeeeEEE--ecccHHHHHHHHHHhChHHHH
Confidence 379999999999999 99999954 3554 3899 999999999999999999 999999999999999999999
Q ss_pred HHHHhhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcc--hhHHHHHh
Q 044123 79 EVCLHHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFS--DKYEESAS 143 (148)
Q Consensus 79 ~~c~~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~--~~f~~l~~ 143 (148)
+.|++||.++++++| |++++.+|+.|++.+|.+.+.+||.+||.++.++ ++|.+|+.
T Consensus 110 ~~C~~fL~~~l~~~N--------Cl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~ 168 (480)
T PHA02790 110 YTCINFILRDFRKEY--------CVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSM 168 (480)
T ss_pred HHHHHHHHhhCCcch--------HHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCH
Confidence 999999999999999 9999999999999999999999999999999986 89988653
No 2
>PHA02713 hypothetical protein; Provisional
Probab=99.94 E-value=1.5e-26 Score=186.57 Aligned_cols=126 Identities=14% Similarity=0.203 Sum_probs=118.3
Q ss_pred ceeecCCHHHHHhh-cCCCCCC-CCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHH
Q 044123 3 RIHAARSSILKDCL-DGKLLPI-SSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREV 80 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~~~e~~-~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~ 80 (148)
+||||+|+||++|| ++|+|.. + .+|++.+++ +.+++.+|+|+|||+ + +.+++.+++.+|++|+++.|++.
T Consensus 43 ~vLaa~S~YF~amF~~~~~e~~~~--~~v~l~~v~--~~~~~~ll~y~Yt~~--i--~~~nv~~ll~aA~~lqi~~l~~~ 114 (557)
T PHA02713 43 TILAAGSKYFRTLFTTPMIIRDLV--TRVNLQMFD--KDAVKNIVQYLYNRH--I--SSMNVIDVLKCADYLLIDDLVTD 114 (557)
T ss_pred HHHhhcCHHHHHHhcCCchhhccC--ceEEeccCC--HHHHHHHHHHhcCCC--C--CHHHHHHHHHHHHHHCHHHHHHH
Confidence 68999999999999 9999864 5 789999999 999999999999997 4 66899999999999999999999
Q ss_pred HHhhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhh
Q 044123 81 CLHHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASE 144 (148)
Q Consensus 81 c~~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 144 (148)
|++||.+.++++| |+.++.++..++...|.+.|.+||.+||.++.++++|++|+.+
T Consensus 115 C~~~l~~~l~~~N--------Cl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~~ 170 (557)
T PHA02713 115 CESYIKDYTNHDT--------CIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVFE 170 (557)
T ss_pred HHHHHHhhCCccc--------hHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCHH
Confidence 9999999999999 9999998988888889999999999999999999999998754
No 3
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=2.6e-26 Score=185.14 Aligned_cols=128 Identities=21% Similarity=0.287 Sum_probs=124.7
Q ss_pred ceeecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHH
Q 044123 3 RIHAARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVC 81 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c 81 (148)
+||||.|+||++|| ++++|+.+ .+|++.+++ +.+++.+++|+|||.+.+ +.+++.+|+.+|+.++++.+++.|
T Consensus 53 ~VLAa~S~YFraMFt~~l~e~~~--~~i~l~~v~--~~~l~~ll~y~Yt~~i~i--~~~nVq~ll~aA~~lQi~~v~~~C 126 (571)
T KOG4441|consen 53 VVLAACSPYFRAMFTSGLKESKQ--KEINLEGVD--PETLELLLDYAYTGKLEI--SEDNVQELLEAASLLQIPEVVDAC 126 (571)
T ss_pred HHHHhccHHHHHHhcCCcccccc--eEEEEecCC--HHHHHHHHHHhhcceEEe--chHhHHHHHHHHHHhhhHHHHHHH
Confidence 68999999999999 99999999 999999999 999999999999999999 999999999999999999999999
Q ss_pred HhhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhh
Q 044123 82 LHHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASE 144 (148)
Q Consensus 82 ~~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 144 (148)
.+||.++++++| |+.+..+|+.|++.+|.+.+..||.+||.++..+++|++|+.+
T Consensus 127 ~~fL~~~l~~~N--------clgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~ 181 (571)
T KOG4441|consen 127 CEFLESQLDPSN--------CLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLE 181 (571)
T ss_pred HHHHHhcCCHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHH
Confidence 999999999999 9999999999999999999999999999999999999998754
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.93 E-value=3.4e-26 Score=183.77 Aligned_cols=124 Identities=17% Similarity=0.330 Sum_probs=118.2
Q ss_pred ceeecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHH
Q 044123 3 RIHAARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVC 81 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c 81 (148)
+||+++|+||++|| ++|+ + .+|.+.+ + +++|+.+|+|+|||++.+ +.+++.+++.+|++|+++.|++.|
T Consensus 28 ~vLaa~S~yF~~mf~~~~~---~--~~i~l~~-~--~~~~~~~l~y~Ytg~~~i--~~~~~~~ll~~A~~l~~~~l~~~C 97 (534)
T PHA03098 28 IILSSSSEYFKKMFKNNFK---E--NEINLNI-D--YDSFNEVIKYIYTGKINI--TSNNVKDILSIANYLIIDFLINLC 97 (534)
T ss_pred HHHHhhhHHHHHHHhCCCC---C--ceEEecC-C--HHHHHHHHHHhcCCceEE--cHHHHHHHHHHHHHhCcHHHHHHH
Confidence 68999999999999 8888 4 6799998 9 999999999999999988 889999999999999999999999
Q ss_pred HhhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhh
Q 044123 82 LHHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASE 144 (148)
Q Consensus 82 ~~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 144 (148)
+++|.+.++.+| |+.++.+|..|++..|.+.|.+||..||.++.++++|.+|+.+
T Consensus 98 ~~~l~~~l~~~n--------c~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~ 152 (534)
T PHA03098 98 INYIIKIIDDNN--------CIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKN 152 (534)
T ss_pred HHHHHHhCCHhH--------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHH
Confidence 999999999999 9999999999999999999999999999999999999998754
No 5
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.86 E-value=3.8e-22 Score=151.28 Aligned_cols=131 Identities=20% Similarity=0.319 Sum_probs=123.3
Q ss_pred CceeecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCch-hhHHHHHHHHHhccccchHHHHH
Q 044123 2 GRIHAARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPRE-KLQKHVVGLFAAGDNYEIEYLRE 79 (148)
Q Consensus 2 ~~vLaa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~-~~~~~~~~ll~~A~~~~i~~L~~ 79 (148)
.+||||||.|||+|+ |+|.|+.+ ..|++.+-. .++|+.+|+|||||++... ...+...+.+.+|++|++..|..
T Consensus 60 RvILAaRs~yFRAlLYgGm~Es~q--~~ipLq~t~--~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~ 135 (620)
T KOG4350|consen 60 RVILAARSSYFRALLYGGMQESHQ--QLIPLQETN--SEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLET 135 (620)
T ss_pred hhhHHHHHHHHHHHHhhhhhhhhh--ccccccccc--HHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHH
Confidence 479999999999999 99999998 999999999 9999999999999999762 24567899999999999999999
Q ss_pred HHHhhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhh
Q 044123 80 VCLHHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASE 144 (148)
Q Consensus 80 ~c~~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 144 (148)
+..+|+.+.+..+| ++.++..|..|++.+|.+.|+.|..+|..++...+.|..|+++
T Consensus 136 aiSeYl~~iL~~~N--------vCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~LSk~ 192 (620)
T KOG4350|consen 136 AISEYLKEILKNEN--------VCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRLSKD 192 (620)
T ss_pred HHHHHHHHHHcccc--------eeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhhhHH
Confidence 99999999999999 9999999999999999999999999999999999999999875
No 6
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.70 E-value=6.2e-17 Score=124.91 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=117.2
Q ss_pred ceeecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHH
Q 044123 3 RIHAARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVC 81 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c 81 (148)
.|||..|++|.+|| |++.+... .+|+++|++ +.+|..+|+|+|++.+.. ..++++.++.+|+||.++.|...|
T Consensus 136 ~vla~gS~VFdaMf~g~~a~~~s--~ei~lpdve--paaFl~~L~flYsdev~~--~~dtvi~tl~~AkKY~VpaLer~C 209 (521)
T KOG2075|consen 136 LVLADGSDVFDAMFYGGLAEDAS--LEIRLPDVE--PAAFLAFLRFLYSDEVKL--AADTVITTLYAAKKYLVPALERQC 209 (521)
T ss_pred hhhhcchHHHHHHhccCcccccC--ceeecCCcC--hhHhHHHHHHHhcchhhh--hHHHHHHHHHHHHHhhhHHHHHHH
Confidence 47999999999999 99999855 789999999 999999999999998888 889999999999999999999999
Q ss_pred HhhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHH
Q 044123 82 LHHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESA 142 (148)
Q Consensus 82 ~~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~ 142 (148)
.++|...+-+.|+ ++.+.+.|..++-++|...|+.-|..++++....+.|.++.
T Consensus 210 Vkflr~~l~~~na-------f~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~did 263 (521)
T KOG2075|consen 210 VKFLRKNLMADNA-------FLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDID 263 (521)
T ss_pred HHHHHHhcCChHH-------HHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeehh
Confidence 9999999999884 55666669999999999999999999999999988887765
No 7
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.69 E-value=3.8e-17 Score=113.92 Aligned_cols=125 Identities=18% Similarity=0.276 Sum_probs=109.4
Q ss_pred ceeecCCHHHHHhhcCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHHH
Q 044123 3 RIHAARSSILKDCLDGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL 82 (148)
Q Consensus 3 ~vLaa~S~~F~~~f~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c~ 82 (148)
-||||||++++-.- .-.|. + ....+.|++ +++|..+++||||++++...++..+.++.++|++|+++-|++.|+
T Consensus 86 fVLAARsD~WkfaN-~~dek-s--e~~~~dDad--~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~ 159 (280)
T KOG4591|consen 86 FVLAARSDFWKFAN-GGDEK-S--EELDLDDAD--FEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCE 159 (280)
T ss_pred hhhhhhcchhhhcc-CCCcc-h--hhhcccccC--HHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999997432 21121 2 556788999 999999999999999998778889999999999999999999999
Q ss_pred hhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHH
Q 044123 83 HHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESA 142 (148)
Q Consensus 83 ~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~ 142 (148)
+.+...++..| |+.++++|+..+...|...|...|..+|.++ ...+|.+++
T Consensus 160 k~l~a~l~V~N--------CIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~FaqMs 210 (280)
T KOG4591|consen 160 KGLGALLHVDN--------CIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFAQMS 210 (280)
T ss_pred HHHhhHhhHhh--------HHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHHhcc
Confidence 99999999999 9999999999999999999999999999988 567777665
No 8
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.67 E-value=2.7e-16 Score=119.26 Aligned_cols=125 Identities=14% Similarity=0.186 Sum_probs=113.0
Q ss_pred cCCHHHHHhh-cCCCCCCCCCCCeeec--ccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHHHh
Q 044123 7 ARSSILKDCL-DGKLLPISSTGGMTTM--EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 83 (148)
Q Consensus 7 a~S~~F~~~f-~~~~e~~~~~~~i~l~--~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~ 83 (148)
.+|+||++|| |.|+|++...-.++|+ +|+ ..++..++.=+|.+++.+ ..+.+..++.+|..+.+++|.+.|.+
T Consensus 89 ~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id--~~al~~a~gsLY~dEveI--~l~dv~gvlAaA~~lqldgl~qrC~e 164 (488)
T KOG4682|consen 89 FQSEYFKSMFSGTWKESSMNIIQLEIPDPNID--VVALQVAFGSLYRDEVEI--KLSDVVGVLAAACLLQLDGLIQRCGE 164 (488)
T ss_pred eccHHHHHHhccccChhhCceEEEEcCCCccc--HHHHHHHHhhhhhhheec--cHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4799999999 9999998833334444 489 999999999999999999 99999999999999999999999999
Q ss_pred hhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHh
Q 044123 84 HMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESAS 143 (148)
Q Consensus 84 ~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 143 (148)
.|++.+++.| ++.++..+.+|+.+.+++.|.+++..|+..+....-+.+++.
T Consensus 165 vMie~lspkt--------a~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~ 216 (488)
T KOG4682|consen 165 VMIETLSPKT--------ACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISI 216 (488)
T ss_pred HHHHhcChhh--------hhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCH
Confidence 9999999999 999999999999999999999999999999988776665544
No 9
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.61 E-value=1.7e-15 Score=123.40 Aligned_cols=127 Identities=16% Similarity=0.213 Sum_probs=109.9
Q ss_pred CceeecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhC-CCCCchh---hHHHHHHHHHhccccchHH
Q 044123 2 GRIHAARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYT-GSLPREK---LQKHVVGLFAAGDNYEIEY 76 (148)
Q Consensus 2 ~~vLaa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYt-g~~~~~~---~~~~~~~ll~~A~~~~i~~ 76 (148)
+|+|+||++||..|| .-|.|+.+ -.+....+. .+.++.+|+|+|+ ++....+ ..+.+.+++.+||.|.+.+
T Consensus 727 kc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~--~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~ 802 (1267)
T KOG0783|consen 727 KCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLT--VEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILE 802 (1267)
T ss_pred eeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcch--HHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHH
Confidence 589999999999999 99999987 556666678 8999999999994 4443322 2367889999999999999
Q ss_pred HHHHHHhhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHH
Q 044123 77 LREVCLHHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEE 140 (148)
Q Consensus 77 L~~~c~~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~ 140 (148)
|+.+|+..|.+.++..| |-.++++|..|+++.|...|++||..|+..+.......+
T Consensus 803 Lk~Ice~~ll~kl~lk~--------~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi~~ 858 (1267)
T KOG0783|consen 803 LKSICEQSLLRKLNLKT--------LPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSISE 858 (1267)
T ss_pred HHHHHHHHHHhHhcccc--------hHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccHhh
Confidence 99999999999999999 999999999999999999999999999998887554433
No 10
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.60 E-value=2.8e-16 Score=101.55 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=71.7
Q ss_pred ceeecCCHHHHHhh-cC-CCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhh-HHHHHHHHHhccccchHHHHH
Q 044123 3 RIHAARSSILKDCL-DG-KLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKL-QKHVVGLFAAGDNYEIEYLRE 79 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~-~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~-~~~~~~ll~~A~~~~i~~L~~ 79 (148)
.||+++|+||++|| ++ +++... .+|.+++++ +++|+.+++|+|+|.+.. + .+++.+++.+|++|+++.|+.
T Consensus 28 ~iL~~~S~~F~~~~~~~~~~~~~~--~~i~~~~~~--~~~~~~~l~~~Y~~~~~~--~~~~~~~~ll~lA~~~~~~~L~~ 101 (111)
T PF00651_consen 28 NILAARSPYFRNLFEGSKFKESTV--PEISLPDVS--PEAFEAFLEYMYTGEIEI--NSDENVEELLELADKLQIPELKK 101 (111)
T ss_dssp HHHHHHBHHHHHHHTTTTSTTSSE--EEEEETTSC--HHHHHHHHHHHHHSEEEE--E-TTTHHHHHHHHHHTTBHHHHH
T ss_pred hhhhccchhhhhcccccccccccc--ccccccccc--ccccccccccccCCcccC--CHHHHHHHHHHHHHHhCcHHHHH
Confidence 57999999999999 66 565554 568899999 999999999999999988 6 889999999999999999999
Q ss_pred HHHhhhchh
Q 044123 80 VCLHHMPAS 88 (148)
Q Consensus 80 ~c~~~l~~~ 88 (148)
.|.++|.++
T Consensus 102 ~~~~~l~~~ 110 (111)
T PF00651_consen 102 ACEKFLQES 110 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999998764
No 11
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.54 E-value=6.8e-15 Score=90.73 Aligned_cols=74 Identities=28% Similarity=0.345 Sum_probs=67.3
Q ss_pred ceeecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHH
Q 044123 3 RIHAARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVC 81 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c 81 (148)
.+|+++|+||++|| +++.++.. ..+.+++.+ +.+|+.+++|+|+|++.. +..++..++.+|++|+++.|++.|
T Consensus 16 ~iL~~~s~~f~~~~~~~~~~~~~--~~i~l~~~~--~~~f~~~l~~ly~~~~~~--~~~~~~~l~~~a~~~~~~~l~~~c 89 (90)
T smart00225 16 AVLAACSPYFKALFSGDFKESKK--SEIYLDDVS--PEDFRALLEFLYTGKLDL--PEENVEELLELADYLQIPGLVELC 89 (90)
T ss_pred HHHhhcCHHHHHHHcCCCccCCC--CEEEecCCC--HHHHHHHHHeecCceeec--CHHHHHHHHHHHHHHCcHHHHhhh
Confidence 47899999999999 88877755 789999999 999999999999999988 767999999999999999999988
Q ss_pred H
Q 044123 82 L 82 (148)
Q Consensus 82 ~ 82 (148)
+
T Consensus 90 ~ 90 (90)
T smart00225 90 E 90 (90)
T ss_pred C
Confidence 4
No 12
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.87 E-value=1.5e-08 Score=77.29 Aligned_cols=127 Identities=12% Similarity=0.106 Sum_probs=101.9
Q ss_pred cCCHHHHHhh-cCCCCCC-CC-CCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchH--H-HHHH
Q 044123 7 ARSSILKDCL-DGKLLPI-SS-TGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIE--Y-LREV 80 (148)
Q Consensus 7 a~S~~F~~~f-~~~~e~~-~~-~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~--~-L~~~ 80 (148)
.|.+||+.|| |++.|+. ++ .....++... ..+++..++|+|+++.++ ..+-+.+++..|+++.+. + |+.+
T Consensus 311 ~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~--~~vveI~lr~lY~d~tdi--~~~~A~dvll~ad~lal~~dr~Lkt~ 386 (516)
T KOG0511|consen 311 LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLA--DVVVEIDLRNLYCDQTDI--IFDVASDVLLFADKLALADDRLLKTA 386 (516)
T ss_pred HHHHHHHHHhccchhhhcCCccccccccchHH--HHHHHHHHHHhhcccccc--hHHHHhhHHHHhhHhhhhhhhhhhhh
Confidence 4789999999 9999965 21 1234556677 889999999999999988 778889999999998766 2 5555
Q ss_pred HHhhhchh---cccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhhC
Q 044123 81 CLHHMPAS---FQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASEF 145 (148)
Q Consensus 81 c~~~l~~~---l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~ 145 (148)
+...|.+. ++.-| +.++++.+.......|..++..|+..|+..+...|++.+..+..
T Consensus 387 as~~itq~~e~id~y~--------V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s 446 (516)
T KOG0511|consen 387 ASAEITQWLELIDMYG--------VLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTS 446 (516)
T ss_pred hhHHHHHHHHHHHhhh--------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhc
Confidence 55555443 33445 89999999999999999999999999999999999998876543
No 13
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.41 E-value=3.8e-07 Score=68.65 Aligned_cols=124 Identities=23% Similarity=0.185 Sum_probs=101.2
Q ss_pred ceeecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHH---HHHHhccccchHHHH
Q 044123 3 RIHAARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVV---GLFAAGDNYEIEYLR 78 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~---~ll~~A~~~~i~~L~ 78 (148)
++++|+|++|+.|+ .+..+... ..+.+.+.+ +..++++..|.|+..-.. ..+... .++..|.+++.+.++
T Consensus 117 ~~~~a~~~V~~~~~~~d~~~~~~--~~~~~~d~~--~~~~~~~~~F~~~~s~~~--~~~~~~~~~~~~a~~f~~~~~~lk 190 (297)
T KOG1987|consen 117 LVLVARSEVFEAMGKSDVFKESS--KLITLLEEK--PEVLEALNGFQVLPSQVS--SVERIFEKHPDLAAAFKYKNRHLK 190 (297)
T ss_pred eEEEeeecceeeecccccchhcc--ccccccccc--hhhHhhhceEEEeccchH--HHHHhhcCChhhhhccccccHHHH
Confidence 57889999999999 55554444 556777888 999999999999865544 444554 788899999999999
Q ss_pred HHHHhhhchhcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHH--chHHhhcchhHHH
Q 044123 79 EVCLHHMPASFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVK--KVEELVFSDKYEE 140 (148)
Q Consensus 79 ~~c~~~l~~~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~--~~~~~~~~~~f~~ 140 (148)
..|...+.+.+...+ +...+..+..++...+...+..++.. ++..+....++..
T Consensus 191 ~~~~~~l~~~~~~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~~ 246 (297)
T KOG1987|consen 191 LACMPVLLSLIETLN--------VSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEVK 246 (297)
T ss_pred HHHHHHHHHHHHhhh--------hcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHHH
Confidence 999999999999888 88888999999999999999998887 7777776555533
No 14
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.12 E-value=1.3e-06 Score=64.28 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=63.8
Q ss_pred ceeecCCHHHHHhh-cCCCCCCCC-------CCCeeecc-cCCcHHHHH-HHHHHHhCCCCCch----------------
Q 044123 3 RIHAARSSILKDCL-DGKLLPISS-------TGGMTTME-VAEEGEVLK-ALVDFLYTGSLPRE---------------- 56 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~~~e~~~~-------~~~i~l~~-~~~~~~~~~-~~l~yiYtg~~~~~---------------- 56 (148)
+|.+|||++||.++ +..+|+... +.+|.+.+ +- |.+|. .+++++||++++..
T Consensus 268 ai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I~--PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeak 345 (401)
T KOG2838|consen 268 AIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELIF--PKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAK 345 (401)
T ss_pred HHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhhc--chhhhhhhhhhheecccchhhcccCCcccccHHHHH
Confidence 57799999999999 766665432 23466655 55 55554 56799999877431
Q ss_pred ----------hhHHHHHHHHHhccccchHHHHHHHHhhhchhccccc
Q 044123 57 ----------KLQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSN 93 (148)
Q Consensus 57 ----------~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~l~~~n 93 (148)
.....+++|+++|..|.++.|.+.|+..+......++
T Consensus 346 AitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadl 392 (401)
T KOG2838|consen 346 AITNAGKPNDLQAAEALELIEIALFFEFEMLAQACEDVIRKACAADL 392 (401)
T ss_pred HHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 0113567788889999999999999888888777666
No 15
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.03 E-value=7.3e-06 Score=51.87 Aligned_cols=43 Identities=33% Similarity=0.548 Sum_probs=39.0
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhh
Q 044123 102 AIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASE 144 (148)
Q Consensus 102 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 144 (148)
|++++.+|..|+...|.+.|.+||..||.++..+++|.+|+.+
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~ 43 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFD 43 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HH
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHH
Confidence 7899999999999999999999999999999999999998754
No 16
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.87 E-value=6.4e-05 Score=54.49 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=62.7
Q ss_pred cCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHHHhhh
Q 044123 7 ARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHM 85 (148)
Q Consensus 7 a~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l 85 (148)
-...+|++|+ .++.-....++.|-| |=+ |.-|..+|+|+-.|.++.+.+.+.+.+|+.=|..|.++.|.+.|...+
T Consensus 25 k~dg~fk~m~e~~i~~~~d~s~~IFI-DRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i 101 (230)
T KOG2716|consen 25 KFDGFFKTMLETDIPVEKDESGCIFI-DRS--PKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAI 101 (230)
T ss_pred hhhhHHHHHhhcCCccccCCcCcEEe-cCC--hhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3567899999 776422221144554 456 999999999999988887668899999999999999999999999976
Q ss_pred chh
Q 044123 86 PAS 88 (148)
Q Consensus 86 ~~~ 88 (148)
...
T Consensus 102 ~~~ 104 (230)
T KOG2716|consen 102 ARL 104 (230)
T ss_pred hhc
Confidence 654
No 17
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.56 E-value=8.1e-05 Score=46.56 Aligned_cols=43 Identities=33% Similarity=0.467 Sum_probs=39.3
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhh
Q 044123 102 AIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASE 144 (148)
Q Consensus 102 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~ 144 (148)
|++++.+|..|++..|.+.|.+||..||..+.++++|.+|+.+
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~ 43 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLE 43 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHH
Confidence 5678889999999999999999999999999999999988753
No 18
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.53 E-value=0.00028 Score=44.07 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=50.8
Q ss_pred ecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHH-----hCCC---CC-chhhHHHHHHHHHhccccc
Q 044123 6 AARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFL-----YTGS---LP-REKLQKHVVGLFAAGDNYE 73 (148)
Q Consensus 6 aa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yi-----Ytg~---~~-~~~~~~~~~~ll~~A~~~~ 73 (148)
|.-|.-.|+|| |+..++.....+|.+.++. ..+++.+.+|+ |++. +| .+..++.+++||.+|+++.
T Consensus 36 AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 36 AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE 111 (112)
T ss_pred hhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence 44588899999 7765554333789999999 99999999998 6654 21 1226789999999999875
No 19
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.68 E-value=0.0045 Score=39.47 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=43.4
Q ss_pred ecCCHHHHHhh-cCCCC-CCCCCCCeeecccCCcHHHHHHHHHHHhCCCCC-c----------h------hhHHHHHHHH
Q 044123 6 AARSSILKDCL-DGKLL-PISSTGGMTTMEVAEEGEVLKALVDFLYTGSLP-R----------E------KLQKHVVGLF 66 (148)
Q Consensus 6 aa~S~~F~~~f-~~~~e-~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~-~----------~------~~~~~~~~ll 66 (148)
+..|..++.|+ +.-.+ ... ..|++++++ ..+++.+++|++.-+-. . . .+.+.+.+|+
T Consensus 21 a~~S~~i~~~l~~~~~~~~~~--~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl 96 (104)
T smart00512 21 ARQSKTIKAMIEDLGVDDENN--NPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELI 96 (104)
T ss_pred HHHHHHHHHHHHccCcccCCC--CCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHH
Confidence 35688999999 32221 222 579999999 99999999999652111 0 0 1234677788
Q ss_pred Hhccccch
Q 044123 67 AAGDNYEI 74 (148)
Q Consensus 67 ~~A~~~~i 74 (148)
.||++++|
T Consensus 97 ~AAnyL~I 104 (104)
T smart00512 97 LAANYLDI 104 (104)
T ss_pred HHHHhhCC
Confidence 88877754
No 20
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.60 E-value=0.0027 Score=48.18 Aligned_cols=77 Identities=12% Similarity=0.114 Sum_probs=60.3
Q ss_pred CHHHHHhh-cCCCCCCCCCCCeeec-ccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHHHhhhc
Q 044123 9 SSILKDCL-DGKLLPISSTGGMTTM-EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMP 86 (148)
Q Consensus 9 S~~F~~~f-~~~~e~~~~~~~i~l~-~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~ 86 (148)
=.||+..+ ....+++.. ..|+|. +-| -.+|+=+++|+....-.+ +.+|++.|+.-|+.++|+.|.+.|..|+.
T Consensus 27 M~YF~~~l~~~~~~~~~~-~~idisVhCD--v~iF~WLm~yv~~~~p~l--~~~NvvsIliSS~FL~M~~Lve~cl~y~~ 101 (317)
T PF11822_consen 27 MRYFAEYLSRYINDSQRW-EEIDISVHCD--VHIFEWLMRYVKGEPPSL--TPSNVVSILISSEFLQMESLVEECLQYCH 101 (317)
T ss_pred hHHHHHHHhhcccccCcC-CCcceEEecC--hhHHHHHHHHhhcCCCcC--CcCcEEEeEehhhhhccHHHHHHHHHHHH
Confidence 36899988 544444321 456665 356 889999999999865555 88999999999999999999999999987
Q ss_pred hhcc
Q 044123 87 ASFQ 90 (148)
Q Consensus 87 ~~l~ 90 (148)
++++
T Consensus 102 ~~~~ 105 (317)
T PF11822_consen 102 DHMS 105 (317)
T ss_pred HhHH
Confidence 6644
No 21
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=96.56 E-value=0.0038 Score=52.81 Aligned_cols=49 Identities=27% Similarity=0.393 Sum_probs=36.6
Q ss_pred ceeecCCHHHHHhh-cCCCC--C--------CCCCCCeeecccCCcHHHHHHHHHHHhCCCC
Q 044123 3 RIHAARSSILKDCL-DGKLL--P--------ISSTGGMTTMEVAEEGEVLKALVDFLYTGSL 53 (148)
Q Consensus 3 ~vLaa~S~~F~~~f-~~~~e--~--------~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~ 53 (148)
-||++||++|+.+| ..-+. + .++...|.++++. |..|+.+|+||||+..
T Consensus 575 fIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt~ 634 (1267)
T KOG0783|consen 575 FILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDTL 634 (1267)
T ss_pred EEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhcccc
Confidence 48999999999999 33222 1 1222446688999 9999999999999843
No 22
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.027 Score=38.93 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=59.7
Q ss_pred cCCHHHHHhh--cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCC---------------c--h------hhHHH
Q 044123 7 ARSSILKDCL--DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLP---------------R--E------KLQKH 61 (148)
Q Consensus 7 a~S~~F~~~f--~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~---------------~--~------~~~~~ 61 (148)
-.|...++++ .+.. ... ..|+++++. ...+..+|.|++.-+-+ + + .+..+
T Consensus 25 ~~s~~i~~~~~~~~~~-~~~--~~IPl~nV~--~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~t 99 (162)
T KOG1724|consen 25 RQSQTISAHMIEDGCA-DEN--DPIPLPNVT--SKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGT 99 (162)
T ss_pred HHhHHHHHHHHHcCCC-ccC--CccccCccC--HHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHH
Confidence 3466677777 2221 111 369999999 99999999999872211 0 0 11257
Q ss_pred HHHHHHhccccchHHHHHHHHhhhchhccccc
Q 044123 62 VVGLFAAGDNYEIEYLREVCLHHMPASFQSSN 93 (148)
Q Consensus 62 ~~~ll~~A~~~~i~~L~~~c~~~l~~~l~~~n 93 (148)
+.+|..+|++++|+.|.+.|++.+...+...+
T Consensus 100 Lfdli~AAnyLdi~gLl~~~ck~va~mikgkt 131 (162)
T KOG1724|consen 100 LFDLILAANYLDIKGLLDLTCKTVANMIKGKT 131 (162)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHccCC
Confidence 89999999999999999999998887776655
No 23
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=95.70 E-value=0.024 Score=41.12 Aligned_cols=70 Identities=11% Similarity=0.270 Sum_probs=53.0
Q ss_pred HHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHHHh
Q 044123 11 ILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 83 (148)
Q Consensus 11 ~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~ 83 (148)
-..+|| +.-+-.++....-.+.|=+ |.-|+-+|.|+-.|+++.. +.-++.++++.|++|+|-.|++..+.
T Consensus 35 MLa~MF~~~g~~~~~d~kGa~lIDRs--p~yFepIlNyLr~Gq~~~~-s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 35 MLAAMFSGRGAMCQEDKKGAVLIDRS--PKYFEPILNYLRDGQIPSL-SDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHHHHccCCCccccccCceEEEccC--chhhHHHHHHHhcCceeec-CCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 456788 3322222222344555678 9999999999999999763 55688999999999999999998877
No 24
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=95.67 E-value=0.034 Score=41.55 Aligned_cols=71 Identities=17% Similarity=0.131 Sum_probs=48.3
Q ss_pred ceeecCCHHHHHhhcCCCCCC-CCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhH-HHHHHHHHhccccchH
Q 044123 3 RIHAARSSILKDCLDGKLLPI-SSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQ-KHVVGLFAAGDNYEIE 75 (148)
Q Consensus 3 ~vLaa~S~~F~~~f~~~~e~~-~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~-~~~~~ll~~A~~~~i~ 75 (148)
++|++|+|+|+.+.+.-.|.. ...-.|..-+++ ..+|.++|+|+|||+.-.+... +++.-|.++...|+..
T Consensus 147 A~laaRCpffK~l~nsd~e~~ae~i~dik~ag~d--m~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~ 219 (401)
T KOG2838|consen 147 AFLAARCPFFKILANSDEEPEAEDICDIKFAGFD--MDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCF 219 (401)
T ss_pred HHHHhhCcchhhhccCCCCcchhhhhhhhhhccC--hHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCc
Confidence 689999999999882222221 101235556789 9999999999999988653222 4566666777777654
No 25
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=95.56 E-value=0.014 Score=44.64 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=100.1
Q ss_pred eeecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHHH
Q 044123 4 IHAARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCL 82 (148)
Q Consensus 4 vLaa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c~ 82 (148)
+|+..|+.|..+. .+=..+.. +.+.+..+. ...+..+.++.|.+ +...........++.+..-|.++..+..|.
T Consensus 44 ~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~~~d~~ 118 (319)
T KOG1778|consen 44 VLGPASPVFKKVLKQPCRKSLV--KGNKILGVP--CKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQPKADCD 118 (319)
T ss_pred cccccchHHHHHHhhhcchhhh--hcceeeccc--ccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCccccCC
Confidence 6778889888887 55111222 567777888 89999999999987 544445567788888889999999999998
Q ss_pred hhhch-hcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHh
Q 044123 83 HHMPA-SFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESAS 143 (148)
Q Consensus 83 ~~l~~-~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 143 (148)
..+.. .++..| +...+..+..+....|.......+...+.....+..+....-
T Consensus 119 ~~~~~~~~~~r~--------~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c 172 (319)
T KOG1778|consen 119 PILECGLFDKRN--------VFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTC 172 (319)
T ss_pred ccccchhhhhHH--------HHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeec
Confidence 87766 456667 999999999999999999999999999999888766554443
No 26
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.29 E-value=0.0058 Score=38.07 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=44.8
Q ss_pred cCCHHHHHhh-cC---CCCCCCCCCCeeecccCCcHHHHHHHHHHHhC-CCCCchhhHHHHHHHHHhccccchHHH-HHH
Q 044123 7 ARSSILKDCL-DG---KLLPISSTGGMTTMEVAEEGEVLKALVDFLYT-GSLPREKLQKHVVGLFAAGDNYEIEYL-REV 80 (148)
Q Consensus 7 a~S~~F~~~f-~~---~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYt-g~~~~~~~~~~~~~ll~~A~~~~i~~L-~~~ 80 (148)
....+|.+|+ ++ .....+ ..+-+ |=+ |..|+.+|+|+.+ +.++.. +......+++-|.+|+++.+ .+.
T Consensus 20 ~~~s~l~~~~~~~~~~~~~~~~--~~~fi-DRd--p~~F~~IL~ylr~~~~l~~~-~~~~~~~l~~Ea~fy~l~~l~i~~ 93 (94)
T PF02214_consen 20 YPDSLLARLFSGERSDDYDDDD--GEYFI-DRD--PELFEYILNYLRTGGKLPIP-DEICLEELLEEAEFYGLDELFIED 93 (94)
T ss_dssp STTSTTTSHHHTGHGGGEETTT--TEEEE-SS---HHHHHHHHHHHHHTSSB----TTS-HHHHHHHHHHHT-HHHHBHH
T ss_pred CCCChhhhHHhhccccccCCcc--ceEEe-ccC--hhhhhHHHHHHhhcCccCCC-CchhHHHHHHHHHHcCCCccccCC
Confidence 3455777888 43 222222 44544 568 9999999999999 566552 24567889999999999998 666
Q ss_pred H
Q 044123 81 C 81 (148)
Q Consensus 81 c 81 (148)
|
T Consensus 94 c 94 (94)
T PF02214_consen 94 C 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 27
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=94.87 E-value=0.064 Score=32.35 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHhhhchhccccc
Q 044123 58 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQSSN 93 (148)
Q Consensus 58 ~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~l~~~n 93 (148)
+...+.+|+.+|++++|+.|.+.|...+...+...+
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks 47 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKS 47 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCC
Confidence 557899999999999999999999999998887666
No 28
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.41 Score=31.75 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=57.4
Q ss_pred ecCCHHHHHhhcCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCC--CCCch---------------------hhHHHH
Q 044123 6 AARSSILKDCLDGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTG--SLPRE---------------------KLQKHV 62 (148)
Q Consensus 6 aa~S~~F~~~f~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg--~~~~~---------------------~~~~~~ 62 (148)
|-+|-..+.|+..+.+.+ -.|..+++. ..++..+++|+-.. ....+ .+.+++
T Consensus 21 AerSiLikN~l~d~~~~n---~p~p~pnVr--Ssvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL 95 (158)
T COG5201 21 AERSILIKNMLCDSTACN---YPIPAPNVR--SSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEML 95 (158)
T ss_pred HHHHHHHHHHhccccccC---CCCcccchh--HHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHH
Confidence 345555555553333332 347788899 99999999999542 11110 012567
Q ss_pred HHHHHhccccchHHHHHHHHhhhchhccccc
Q 044123 63 VGLFAAGDNYEIEYLREVCLHHMPASFQSSN 93 (148)
Q Consensus 63 ~~ll~~A~~~~i~~L~~~c~~~l~~~l~~~n 93 (148)
.++.-+|+++.++.|.+.|+..+.+.+....
T Consensus 96 ~eI~laaNYL~ikpLLd~gCKivaemirgkS 126 (158)
T COG5201 96 LEICLAANYLEIKPLLDLGCKIVAEMIRGKS 126 (158)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHccCC
Confidence 8899999999999999999998888777665
No 29
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=93.78 E-value=0.16 Score=40.15 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=50.8
Q ss_pred CCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHH-hccccchHHHHH
Q 044123 8 RSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFA-AGDNYEIEYLRE 79 (148)
Q Consensus 8 ~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~-~A~~~~i~~L~~ 79 (148)
+=.+|.+++ +.|...+.. ......|=+ |+.|.-+|+|+-||+++. ..-....++. -|.+|++..|..
T Consensus 34 ~DSffsaL~s~~~~s~~~~-~~~iFIDRD--PdlFaviLn~LRTg~L~~--~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 34 RDSFFSALLSGRINSLKDE-SGAIFIDRD--PDLFAVILNLLRTGDLDA--SGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred cchHHHHHhcCccccccCC-CCceEecCC--chHHHHHHHHHhcCCCCC--ccCchhhhhhhhhhhcCcHHHHH
Confidence 346899999 888655431 223444678 999999999999999998 6555555555 899999999876
No 30
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=93.47 E-value=0.18 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.9
Q ss_pred ecCCHHHHHhh-cCCCCCCCCCCCeeecccCCcHHHHHHHHHHHh
Q 044123 6 AARSSILKDCL-DGKLLPISSTGGMTTMEVAEEGEVLKALVDFLY 49 (148)
Q Consensus 6 aa~S~~F~~~f-~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiY 49 (148)
+-.|..++.|+ +...+. ..|++++++ ...++.+++|++
T Consensus 20 a~~S~~i~~ml~~~~~~~----~~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 20 AKQSKTIKNMLEDLGDED----EPIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp HTTSHHHHHHHHCTCCCG----TEEEETTS---HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccc----cccccCccC--HHHHHHHHHHHH
Confidence 45799999999 432221 249999999 999999999986
No 31
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=82.83 E-value=1.1 Score=36.08 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=32.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHh
Q 044123 102 AIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESAS 143 (148)
Q Consensus 102 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~ 143 (148)
++.++..|++|..+.|.+.|++||..+.- ...+|.+|++
T Consensus 190 vi~tl~~AkKY~VpaLer~CVkflr~~l~---~~naf~~L~q 228 (521)
T KOG2075|consen 190 VITTLYAAKKYLVPALERQCVKFLRKNLM---ADNAFLELFQ 228 (521)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcC---ChHHHHHHHH
Confidence 99999999999999999999999997643 3455666655
No 32
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=81.85 E-value=0.63 Score=35.59 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=37.3
Q ss_pred hcccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcch
Q 044123 88 SFQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSD 136 (148)
Q Consensus 88 ~l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~ 136 (148)
.++++| ++.++.=+.....+.|.+.|+.|+..|+.+|+.++
T Consensus 71 ~l~~~N--------vvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 71 SLTPSN--------VVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred cCCcCc--------EEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 577778 99999999999999999999999999999999865
No 33
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=80.99 E-value=2.6 Score=29.43 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=47.1
Q ss_pred eeecccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHHHhhhchhc
Q 044123 29 MTTMEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLHHMPASF 89 (148)
Q Consensus 29 i~l~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~l 89 (148)
-.+.|=| |.-|.-+|+|+-+|++.. +.-.-..+++-|+.|.++.|.++..+.|..+.
T Consensus 66 AYlIDRD--P~~FgpvLNylRhgklvl--~~l~eeGvL~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 66 AYLIDRD--PFYFGPVLNYLRHGKLVL--NKLSEEGVLEEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred ceEeccC--cchHHHHHHHHhcchhhh--hhhhhhccchhhhccCChHHHHHHHHHHHHHh
Confidence 4566778 999999999999999988 54444568999999999999998888777654
No 34
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=79.70 E-value=3.6 Score=25.60 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHc
Q 044123 102 AIDFLRIGYNYQLDELRDAALNFIVKK 128 (148)
Q Consensus 102 ~~~~~~~a~~~~~~~L~~~~~~~i~~~ 128 (148)
+.+++.+|..++.+.|.+.|..++.++
T Consensus 84 ~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 84 VEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
No 35
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=76.45 E-value=2.3 Score=26.17 Aligned_cols=68 Identities=19% Similarity=0.380 Sum_probs=43.0
Q ss_pred HHHHHhccccchHHHHHHHHhhhchhcccc----cccccchhhHHHHHHHhhc--CChHHHHHHHHHHHHHchH
Q 044123 63 VGLFAAGDNYEIEYLREVCLHHMPASFQSS----NARDFQSSNAIDFLRIGYN--YQLDELRDAALNFIVKKVE 130 (148)
Q Consensus 63 ~~ll~~A~~~~i~~L~~~c~~~l~~~l~~~----n~~~~~~~~~~~~~~~a~~--~~~~~L~~~~~~~i~~~~~ 130 (148)
.+++..|+.|+...|.+.|.+++..++..- .-..+.......++.--.- .+-..+.+.+.+++..+..
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~ 75 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPE 75 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHH
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHH
Confidence 468899999999999999999999875421 1111222234444442221 1234688999999987765
No 36
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=69.00 E-value=4.2 Score=32.34 Aligned_cols=32 Identities=22% Similarity=0.486 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHhhhchhc
Q 044123 58 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASF 89 (148)
Q Consensus 58 ~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~l 89 (148)
+++++...+++|.+|+++.++..|.+.+..++
T Consensus 171 spkta~~yYea~ckYgle~vk~kc~ewl~~nl 202 (488)
T KOG4682|consen 171 SPKTACGYYEAACKYGLESVKKKCLEWLLNNL 202 (488)
T ss_pred ChhhhhHhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 56899999999999999999999999877653
No 37
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=68.00 E-value=4.6 Score=24.50 Aligned_cols=67 Identities=16% Similarity=0.229 Sum_probs=38.9
Q ss_pred HHHHHhccccchHHHHHHHHhhhchhccccc-c---cccchhhHHHHHHHhhc--CChHHHHHHHHHHHHHch
Q 044123 63 VGLFAAGDNYEIEYLREVCLHHMPASFQSSN-A---RDFQSSNAIDFLRIGYN--YQLDELRDAALNFIVKKV 129 (148)
Q Consensus 63 ~~ll~~A~~~~i~~L~~~c~~~l~~~l~~~n-~---~~~~~~~~~~~~~~a~~--~~~~~L~~~~~~~i~~~~ 129 (148)
.+++.+|+.|+.+.|.+.|.+++.+++..-. . ..+.......++.--.- .+-..+.+.+.+++..+.
T Consensus 2 ~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 2 LGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred HhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCH
Confidence 3577889999999999999999887643211 0 11111122222221111 123457788888888665
No 38
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=64.82 E-value=21 Score=26.05 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=38.3
Q ss_pred ccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHHHHHHHHh
Q 044123 33 EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEYLREVCLH 83 (148)
Q Consensus 33 ~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~ 83 (148)
|=+ ...|+-+++|+-|....++..-.++..|+..|++|+++.+.....+
T Consensus 56 DRD--G~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~ 104 (221)
T KOG2723|consen 56 DRD--GFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLN 104 (221)
T ss_pred cCC--cchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhc
Confidence 455 6799999999999655553344778889999999999987765554
No 39
>PHA02790 Kelch-like protein; Provisional
Probab=63.29 E-value=11 Score=30.44 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHhhhchhccc
Q 044123 58 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQS 91 (148)
Q Consensus 58 ~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~l~~ 91 (148)
+.+|..+++.+|+.|.++.|.+.+.+++.+++..
T Consensus 121 ~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~ 154 (480)
T PHA02790 121 RKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLE 154 (480)
T ss_pred CcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHH
Confidence 5589999999999999999999999998887553
No 40
>PHA03098 kelch-like protein; Provisional
Probab=62.71 E-value=6.8 Score=31.91 Aligned_cols=33 Identities=6% Similarity=0.121 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhccccchHHHHHHHHhhhchhcc
Q 044123 58 LQKHVVGLFAAGDNYEIEYLREVCLHHMPASFQ 90 (148)
Q Consensus 58 ~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~l~ 90 (148)
+.++..+++.+|+.|..+.|++.|.+++.+++.
T Consensus 106 ~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~ 138 (534)
T PHA03098 106 DDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIE 138 (534)
T ss_pred CHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999987754
No 41
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=55.97 E-value=32 Score=27.43 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=42.4
Q ss_pred hhhHHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhhCCC
Q 044123 99 SSNAIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASEFPH 147 (148)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~p~ 147 (148)
+..+.+...+...||.-++.+.|++....++++...+-++..|..-.|+
T Consensus 388 s~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~d 436 (516)
T KOG0511|consen 388 SAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPD 436 (516)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 3447788889999999999999999999999999999999888776664
No 42
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=48.22 E-value=14 Score=28.47 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=35.1
Q ss_pred CCeee-cccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHH
Q 044123 27 GGMTT-MEVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEY 76 (148)
Q Consensus 27 ~~i~l-~~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~ 76 (148)
++.++ ++++ ..+|+++|+|--+|.+.-+ +.-.+.+|-++.|++.|+.
T Consensus 139 gEyeVAdGi~--s~vFRAILdYYksG~iRCP-~~vSvpELrEACDYLlipF 186 (438)
T KOG3840|consen 139 DEFEVADGMT--SSCFRAILDYYQSGTMRCP-SSVSVSELREACDYLLVPF 186 (438)
T ss_pred Cceehhcchh--HHHHHHHHHHHhcCceeCC-CCCchHHHHhhcceEEeec
Confidence 44555 4599 9999999999999977542 4456777888888887664
No 43
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=48.01 E-value=92 Score=21.66 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHHhcc------ccchHHHHHHH--Hhhhch-hccccc----------ccccchhh
Q 044123 41 LKALVDFLYTGSLPREKLQKHVVGLFAAGD------NYEIEYLREVC--LHHMPA-SFQSSN----------ARDFQSSN 101 (148)
Q Consensus 41 ~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~------~~~i~~L~~~c--~~~l~~-~l~~~n----------~~~~~~~~ 101 (148)
+..+-.++..+.++. +...+..++.... +++++-|++.- .+.+.+ -+..+. .+....-.
T Consensus 45 ~~~L~qllq~~Vi~D--Sk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~ 122 (167)
T PF07035_consen 45 FSQLHQLLQYHVIPD--SKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVP 122 (167)
T ss_pred HHHHHHHHhhcccCC--cHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCC
Confidence 333444455455655 6677777777744 44555555422 122222 111222 00111122
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHchHHhhcchhHH
Q 044123 102 AIDFLRIGYNYQLDELRDAALNFIVKKVEELVFSDKYE 139 (148)
Q Consensus 102 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~ 139 (148)
+-.+++.|...+.+.+.-.+.+|...+=..+..+|+|.
T Consensus 123 ~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~~~~~~~f~ 160 (167)
T PF07035_consen 123 ARKFLEAAANSNDDQLFYAVFRFFEERNLRLRGSPSFT 160 (167)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhHhhcCCCCCC
Confidence 55666666667777777777777777666666677664
No 44
>PHA02713 hypothetical protein; Provisional
Probab=45.12 E-value=19 Score=29.90 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.5
Q ss_pred cccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHch
Q 044123 89 FQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKKV 129 (148)
Q Consensus 89 l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 129 (148)
++.+| +.+++..|.....+.+++.|.+|+.+++
T Consensus 91 i~~~n--------v~~ll~aA~~lqi~~l~~~C~~~l~~~l 123 (557)
T PHA02713 91 ISSMN--------VIDVLKCADYLLIDDLVTDCESYIKDYT 123 (557)
T ss_pred CCHHH--------HHHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence 66677 9999999999999999999999999643
No 45
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.02 E-value=28 Score=30.03 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=25.4
Q ss_pred ccCCcHHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccc
Q 044123 33 EVAEEGEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYE 73 (148)
Q Consensus 33 ~~~~~~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~ 73 (148)
|+++-...+..+|+|+-|.+..+ ..+.+..+-.+|.+|-
T Consensus 398 D~~Nak~IV~elLqYL~tAd~si--reeivlKvAILaEKyA 436 (938)
T KOG1077|consen 398 DVSNAKQIVAELLQYLETADYSI--REEIVLKVAILAEKYA 436 (938)
T ss_pred chhhHHHHHHHHHHHHhhcchHH--HHHHHHHHHHHHHHhc
Confidence 44444566777777777765555 6666666666676664
No 46
>PF06887 DUF1265: Protein of unknown function (DUF1265); InterPro: IPR009676 This family represents a conserved region approximately 50 residues long within a number of proteins of unknown function that seem to be restricted to Caenorhabditis elegans.
Probab=40.61 E-value=61 Score=17.50 Aligned_cols=31 Identities=6% Similarity=0.325 Sum_probs=20.4
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHH-chHHh
Q 044123 102 AIDFLRIGYNYQLDELRDAALNFIVK-KVEEL 132 (148)
Q Consensus 102 ~~~~~~~a~~~~~~~L~~~~~~~i~~-~~~~~ 132 (148)
+..++..|+......+.+.|..-|.. ||.++
T Consensus 13 V~nmLivA~d~~f~~v~~~C~Atii~yHf~DF 44 (48)
T PF06887_consen 13 VCNMLIVAHDARFGNVQNCCIATIISYHFHDF 44 (48)
T ss_pred HHhHheeeccccchHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777766653 55544
No 47
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=27.01 E-value=42 Score=27.07 Aligned_cols=73 Identities=19% Similarity=0.305 Sum_probs=46.4
Q ss_pred CHHHHHhhcCCCCCCCCCCCeeecccCCcHHHHHHHHHHHhC-CCCCchh----------hHHHHHHHHHhccccchHHH
Q 044123 9 SSILKDCLDGKLLPISSTGGMTTMEVAEEGEVLKALVDFLYT-GSLPREK----------LQKHVVGLFAAGDNYEIEYL 77 (148)
Q Consensus 9 S~~F~~~f~~~~e~~~~~~~i~l~~~~~~~~~~~~~l~yiYt-g~~~~~~----------~~~~~~~ll~~A~~~~i~~L 77 (148)
|+-|+.+++.+- + +.+.+.+++ .++.-.+|.-... |-+.... ..+++..++.+|..|++++|
T Consensus 93 ~eAF~~lLrYiY---t--g~~~l~~~~--ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~L 165 (620)
T KOG4350|consen 93 SEAFRALLRYIY---T--GKIDLAGVE--EDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDL 165 (620)
T ss_pred HHHHHHHHHHHh---h--cceecccch--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHH
Confidence 667777762221 2 456777777 6665555543322 2222211 12556668889999999999
Q ss_pred HHHHHhhhchh
Q 044123 78 REVCLHHMPAS 88 (148)
Q Consensus 78 ~~~c~~~l~~~ 88 (148)
.+.|..|+.++
T Consensus 166 t~~C~mfmDrn 176 (620)
T KOG4350|consen 166 TDYCMMFMDRN 176 (620)
T ss_pred HHHHHHHHhcC
Confidence 99999998765
No 48
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=23.86 E-value=86 Score=16.47 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhCCCCCchhhHHHHHHHHHhccccchHH
Q 044123 38 GEVLKALVDFLYTGSLPREKLQKHVVGLFAAGDNYEIEY 76 (148)
Q Consensus 38 ~~~~~~~l~yiYtg~~~~~~~~~~~~~ll~~A~~~~i~~ 76 (148)
.+.+...|..+-.|+.. +-.+|.+|+|+.
T Consensus 2 ee~l~~Ai~~v~~g~~S----------~r~AA~~ygVp~ 30 (45)
T PF05225_consen 2 EEDLQKAIEAVKNGKMS----------IRKAAKKYGVPR 30 (45)
T ss_dssp HHHHHHHHHHHHTTSS-----------HHHHHHHHT--H
T ss_pred HHHHHHHHHHHHhCCCC----------HHHHHHHHCcCH
Confidence 45566666766666532 457899999886
No 49
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=23.72 E-value=26 Score=21.25 Aligned_cols=9 Identities=44% Similarity=0.896 Sum_probs=6.5
Q ss_pred HHHHHHhCC
Q 044123 43 ALVDFLYTG 51 (148)
Q Consensus 43 ~~l~yiYtg 51 (148)
+=++||||=
T Consensus 69 AHlDYIYTQ 77 (81)
T PF06404_consen 69 AHLDYIYTQ 77 (81)
T ss_pred HHhhheecc
Confidence 445999983
No 50
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=23.24 E-value=81 Score=26.39 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=28.8
Q ss_pred cccccccccchhhHHHHHHHhhcCChHHHHHHHHHHHHHc
Q 044123 89 FQSSNARDFQSSNAIDFLRIGYNYQLDELRDAALNFIVKK 128 (148)
Q Consensus 89 l~~~n~~~~~~~~~~~~~~~a~~~~~~~L~~~~~~~i~~~ 128 (148)
|+.+| +.+++..|...+...+.+.|.+|+..+
T Consensus 102 i~~~n--------Vq~ll~aA~~lQi~~v~~~C~~fL~~~ 133 (571)
T KOG4441|consen 102 ISEDN--------VQELLEAASLLQIPEVVDACCEFLESQ 133 (571)
T ss_pred echHh--------HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55667 999999999999999999999999963
No 51
>TIGR01964 chpXY CO2 hydration protein. This small family of proteins includes paralogs ChpX and ChpY in Synechococcus sp. PCC7942 and other cyanobacteria, associated with distinct NAD(P)H dehydrogenase complexes. These proteins collectively enable light-dependent CO2 hydration and CO2 uptake; loss of both blocks growth at low CO2 concentrations.
Probab=23.01 E-value=3.7e+02 Score=21.04 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=47.1
Q ss_pred ccccchHHHHHHHHhhhchhcccccccccchhhHHHHH-HHhhcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhhCC
Q 044123 69 GDNYEIEYLREVCLHHMPASFQSSNARDFQSSNAIDFL-RIGYNYQLDELRDAALNFIVKKVEELVFSDKYEESASEFP 146 (148)
Q Consensus 69 A~~~~i~~L~~~c~~~l~~~l~~~n~~~~~~~~~~~~~-~~a~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~p 146 (148)
-.+++-+..++.|...|......+. .+..+ .+--.+-.+.++..+.-...-.|++++ +|-|.+|+..+.
T Consensus 103 D~YLDs~ef~~~a~~aI~ak~k~np--------l~~~l~klfP~fl~Eq~R~~ayys~LGqFWrVM-s~iF~~lsd~Yd 172 (367)
T TIGR01964 103 DEYLDSAEFKANADKAIRAKFKGNP--------LMQLLNKLFPEFLLEQVRMLAYYSALGQFWEVM-APVFLELSDRYD 172 (367)
T ss_pred ccccCCHHHHHHHHHHHHHHHcCCc--------HHHHHHHhChHhHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHh
Confidence 3567778888899888888877766 44333 333444445566666666667888886 788888887653
No 52
>PF10216 ChpXY: CO2 hydration protein (ChpXY); InterPro: IPR010220 This small family of proteins includes paralogs ChpX and ChpY in Synechococcus sp. (strain PCC 7942) (Anacystis nidulans R2) and other cyanobacteria, associated with distinct NAD(P)H dehydrogenase complexes. These proteins collectively enable light-dependent CO2 hydration and CO2 uptake; loss of both blocks growth at low CO2 concentrations.
Probab=22.19 E-value=3.8e+02 Score=20.84 Aligned_cols=68 Identities=13% Similarity=0.129 Sum_probs=46.4
Q ss_pred ccccchHHHHHHHHhhhchhcccccccccchhhHHHHHHHh-hcCChHHHHHHHHHHHHHchHHhhcchhHHHHHhhC
Q 044123 69 GDNYEIEYLREVCLHHMPASFQSSNARDFQSSNAIDFLRIG-YNYQLDELRDAALNFIVKKVEELVFSDKYEESASEF 145 (148)
Q Consensus 69 A~~~~i~~L~~~c~~~l~~~l~~~n~~~~~~~~~~~~~~~a-~~~~~~~L~~~~~~~i~~~~~~~~~~~~f~~l~~~~ 145 (148)
-.+++-+..++.|...|...+..+. .+..+.-. -.+-.+.++..|.-...-.|++++ +|-|.+|+..+
T Consensus 97 D~YLDs~ef~~~a~~aI~ak~k~np--------~~~~l~klFP~fl~Eq~R~~ayys~LGqFWrVM-sdiF~~Lsd~Y 165 (353)
T PF10216_consen 97 DAYLDSPEFKENAERAIQAKFKGNP--------LMLGLNKLFPDFLPEQVRQMAYYSGLGQFWRVM-SDIFLELSDRY 165 (353)
T ss_pred ccccCCHHHHHHHHHHHHHHHcCCc--------HHHHHHHhChHhHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHh
Confidence 4567788889999888888877766 44443322 334445566666666667888886 78888888765
No 53
>PF07632 DUF1593: Protein of unknown function (DUF1593); InterPro: IPR011483 This is a family of proteins found in Rhodopirellula baltica that are predicted to be secreted. Also, a member has been identified in Caulobacter crescentus (Caulobacter vibrioides) (Q9AAT9 from SWISSPROT). These proteins may be related to IPR001910 from INTERPRO.; PDB: 2YHG_A.
Probab=20.76 E-value=47 Score=24.90 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=18.0
Q ss_pred CeeecccCCcHHHHHHHHHHH-hCCCC
Q 044123 28 GMTTMEVAEEGEVLKALVDFL-YTGSL 53 (148)
Q Consensus 28 ~i~l~~~~~~~~~~~~~l~yi-Ytg~~ 53 (148)
+|.+.|+.++++..++|++|+ |+.++
T Consensus 2 viV~TDi~~EpDD~~SlvR~LlYsNe~ 28 (260)
T PF07632_consen 2 VIVLTDIGNEPDDAQSLVRLLLYSNEF 28 (260)
T ss_dssp EEEEE-TTS-THHHHHHHHHHHTGGGS
T ss_pred EEEeCCCCCCCchHHHHHHHHHhcccc
Confidence 466778844499999999998 55544
No 54
>PF10537 WAC_Acf1_DNA_bd: ATP-utilising chromatin assembly and remodelling N-terminal; InterPro: IPR013136 ACF (for ATP-utilising chromatin assembly and remodeling factor) is a chromatin-remodeling complex that catalyzes the ATP-dependent assembly of periodic nucleosome arrays. This reaction utilises the energy of ATP hydrolysis by ISWI, the smaller of the two subunits of ACF. Acf1, the large subunit of ACF, is essential for the full activity of the complex. The WAC (WSTF/Acf1/cbp146) domain is an ~110-residue module present at the N-termini of Acf1-related proteins in a variety of organisms. It is found in association with other domains such as the bromodomain, the PHD-type zinc finger, DDT or WAKS. The DNA-binding region of Acf1 includes the WAC domain, which is necessary for the efficient binding of ACF complex to DNA. It seems probable that the WAC domain will be involved in DNA binding in other related factors [, ]. Some proteins known to contain a WAC domain are the Drosophila melanogaster (Fruit fly) ATP-dependent chromatin assembly factor large subunit Acf1, human WSTF (Williams syndrome transcription factor), mouse cbp146, yeast imitation switch two complex protein 1 (ITC1 or YGL133w), and yeast protein YPL216w.
Probab=20.26 E-value=1.8e+02 Score=18.47 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=22.6
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHch
Q 044123 102 AIDFLRIGYNYQLDELRDAALNFIVKKV 129 (148)
Q Consensus 102 ~~~~~~~a~~~~~~~L~~~~~~~i~~~~ 129 (148)
++.++.+...-++++|.+.+..+++.+|
T Consensus 69 iL~~v~~s~~~rld~Lv~~v~~~~k~~f 96 (102)
T PF10537_consen 69 ILRLVQFSTRSRLDDLVDDVYDFFKDRF 96 (102)
T ss_pred HHHHHHccccccHHHHHHHHHHHHHHcC
Confidence 6677777767678999999999988776
Done!